Psyllid ID: psy13159

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660
MIDYITYCAFTASSGNTWKNIRFKNAPPPPQQDVQEYVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVDPCPGSCGENRELDAQRFLVSSVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICDVFLLSFTAPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEQQQLKRDRGGILVLLPITRRKIKYECRCRRRRGRKRSTSTNCLSLPYAHIF
ccccccccccccccccccccEEEEccccccccccccccccccccccccccEEEcccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEEEcccccEEccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEEccccEEEEcccccccccccccccccccccccccccccccccccEEccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccEEccccccccccccccccccccccccEEEccccccEEEccccccccccccccccccccccccccEEEccccccccccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccEEEccccccccccccccccEEEEcccccEEEccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccc
ccccccccccccccccccccEEEEccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccEEcccccccccccccccccEEEEccccEEEEcccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEcccccccccccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccEEEccccccEEEccccccccccccccccccccccccccccccccccEcccccccccccccccccccccccccccccccEEEcccccEEEEcccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccEEEcccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEEccccccccccccccccccccccccccEEEccccccccccccccccEEEcccccEEEEcccccccccccccccccccccccccccccEEEEcccccccccEEEEcccccccccccccccccccccccc
MIDYITYCAFtassgntwknirfknappppqqdvqeyvnpcvpspcgpysqcrdiggspscsclpnyigappncrpeclqnsecpndkacirekcadpcpgscgynaqckvinhtpictcpdgfigdaflschpkppepvqpiiqedtcncvpnaecrdgvcvclpdyygdgyvscrpecvvnsecprnkacikykcknpcvpgtcgegaicdvvnhavvctcppgttgsplvlcrpiqnepvytnpcqpspcgpnsqcrevnkqavcsclpnyfgsppncrpectvntdcplnkacvnqkcvdpcpgscgenreldAQRFLVSSvclpdyygdgyvscrpecvlnsdcpsnkacirnkcknpcvpgtcgegaiCDVFLlsftapppplesppeyvnpcipspcgpysqcrdiggspscsclpnyigsppncrpecvmnsecpsneacinekcgdpcpgscgynaqckvinhtpictcpdgfigdpftlcspkppeprpppqedvpepvnpcypspcgpysqcrdiggspscsclpnyigappncrpecvqnndcsndkacinekcqdpcpgscgynalckvinhtpictcpdgytgdafsgcypkppeqqqlkrdrggilvllpiTRRKIKYEcrcrrrrgrkrststnclslpyahif
MIDYITYCAFTASSGNTWKNIRFKNAPPPPQQDVQEYVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVDPCPGSCGENRELDAQRFLVSSVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICDVFLLSFTAPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKppeqqqlkrdrggilvllpitrrkikyecrcrrrrgrkrststnclslpyahif
MIDYITYCAFTASSGNTWKNIRFKNAPPPPQQDVQEYVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVDPCPGSCGENRELDAQRFLVSSVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICDVFLLSFTApppplesppeYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSpkppeprpppqedvpepvnpCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEQQQLKRDRGGILVLLPITrrkikyecrcrrrrgrkrSTSTNCLSLPYAHIF
*************************************VNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPC**********CREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVDPCPGSCGENRELDAQRFLVSSVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICDVFLLSFTA**********YVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLC**************************CGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYP***********RGGILVLLPITRRKIKYECR************************
MIDYITYCAFTASSGNTWKNIRFKNAPPPPQQDVQEYVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVDPCPGSCGENRELDAQRFLVSSVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICDVFLLSFTAPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEQQQLKRDRGGILVLLPITRRKIKYECRCRRRRGRKRSTSTNCLSLPYAHIF
MIDYITYCAFTASSGNTWKNIRFKNAPPPPQQDVQEYVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVDPCPGSCGENRELDAQRFLVSSVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICDVFLLSFTAPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPK************PEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEQQQLKRDRGGILVLLPITRRKIKYECRCR*********STNCLSLPYAHIF
MIDYITYCAFTASSGNTWKNIRFKNAPPPPQQDVQEYVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVDPCPGSCGENRELDAQRFLVSSVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICDVFLLSFTAPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEQQQLKRDRGGILVLLPITRRKIKYECRCRRRRGRKRSTSTNCLSLPYAHIF
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MIDYITYCAFTASSGNTWKNIRFKNAPPPPQQDVQEYVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADPCPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAECRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVDPCPGSCGENRELDAQRFLVSSVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICDVFLLSFTAPPPPLESPPEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEQQQLKRDRGGILVLLPITRRKIKYECRCRRRRGRKRSTSTNCLSLPYAHIF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query660 2.2.26 [Sep-21-2011]
Q70E20 1403 Sushi, nidogen and EGF-li yes N/A 0.7 0.329 0.232 5e-09
Q5ZQU0 1403 Sushi, nidogen and EGF-li yes N/A 0.7 0.329 0.234 7e-09
Q9UM47 2321 Neurogenic locus notch ho yes N/A 0.631 0.179 0.246 5e-08
P46530 2437 Neurogenic locus notch ho no N/A 0.706 0.191 0.233 7e-08
Q9R172 2319 Neurogenic locus notch ho no N/A 0.663 0.188 0.254 6e-07
Q61982 2318 Neurogenic locus notch ho no N/A 0.663 0.188 0.251 1e-06
Q99466 2003 Neurogenic locus notch ho no N/A 0.527 0.173 0.264 3e-06
Q01705 2531 Neurogenic locus notch ho no N/A 0.657 0.171 0.236 4e-06
P78504 1218 Protein jagged-1 OS=Homo no N/A 0.671 0.363 0.221 6e-06
Q8UWJ4717 Delta-like protein D OS=D no N/A 0.274 0.252 0.296 1e-05
>sp|Q70E20|SNED1_MOUSE Sushi, nidogen and EGF-like domain-containing protein 1 OS=Mus musculus GN=Sned1 PE=2 SV=2 Back     alignment and function desciption
 Score = 63.5 bits (153), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 142/610 (23%), Positives = 207/610 (33%), Gaps = 148/610 (24%)

Query: 38  VNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCAD 97
           V+ C   PC     C D+ G+ SC C+  + G      P+C   S               
Sbjct: 388 VDECSSDPCQNGGSCVDLVGNYSCICVEPFEG------PQCETGSYL----------VPS 431

Query: 98  PCPGS-CGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCNCVPNAE 156
           PC  + C     C   +   +C CP+GF+G   L C  +       I+ +  C+C     
Sbjct: 432 PCLSNPCQNGGTCVDADEGYVCECPEGFMG---LDCRER-------ILND--CDCRNGGR 479

Query: 157 CRDG---VCVCLPDYYG---DGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGT----- 205
           C      +C C P ++G   +  V+  P C +N++CP    C++Y     CV  T     
Sbjct: 480 CLGANTTLCQCPPGFFGLLCEFEVTATP-CNMNTQCPDGGYCMEYGGSYLCVCHTDHNIS 538

Query: 206 -----------CGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCG 254
                      C  G  CD    +  C CP G  G      RP        + C   PC 
Sbjct: 539 HSLPSPCDSDPCFNGGSCDAHEDSYTCECPRGFHGRHCEKARP--------HLCSSGPCR 590

Query: 255 PNSQCREVNKQAVCSCLPNYFGSP-PNCRPECTVNTDCPLNKACVNQKCVDPC---PGSC 310
               C+E+  +  C+C   + G      +P+   +  C     C +      C   PG  
Sbjct: 591 NGGTCKEMGDEYRCTCPYRFTGRHCEIGKPDSCASGPCHNGGTCFHYIGKYKCDCPPGFS 650

Query: 311 GENREL----------------DAQRFLVSSVCLPDYYG---DGYVSC-RPECVLNSDCP 350
           G + E+                +      S  C P Y G      V C  PE V ++   
Sbjct: 651 GRHCEIAPSPCFRSPCMNGGTCEDLGTDFSCYCQPGYTGHRCQAEVDCGHPEEVEHATMR 710

Query: 351 SNKACIRNKCKNPCVPGTCGEGAICDVFLLSFTAPPPPLESPPE--YVNPCIPSPCGPYS 408
            N   + +     C PG     ++  +  +    P      PP+   V+ C   PC    
Sbjct: 711 FNGTHVGSVALYTCEPGF----SLSALSHIRVCQPQGVWSQPPQCIEVDECRSQPCLHGG 766

Query: 409 QCRDIGGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAQCK 468
            C+D+     C C P Y G        C + ++    + C N                C+
Sbjct: 767 SCQDLIADYQCLCSPGYEGV------HCELETDECQAQPCRN-------------GGSCR 807

Query: 469 VINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGG 528
            +    IC CP+GF+G     C  +               V+ C  SPC    +C D GG
Sbjct: 808 DLPRAFICQCPEGFVG---IHCETE---------------VDACASSPCQHGGRCEDGGG 849

Query: 529 SPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGS-CGYNALCKVINHTP 587
           +  C C   + G   NC                  E   DPC  S CG    C   N + 
Sbjct: 850 AYLCVCPEGFFGY--NC------------------ETVSDPCFSSPCGSRGYCLASNGSH 889

Query: 588 ICTCPDGYTG 597
            CTC  GYTG
Sbjct: 890 SCTCKVGYTG 899

Mus musculus (taxid: 10090)
>sp|Q5ZQU0|SNED1_RAT Sushi, nidogen and EGF-like domain-containing protein 1 OS=Rattus norvegicus GN=Sned1 PE=2 SV=2 Back     alignment and function description
>sp|Q9UM47|NOTC3_HUMAN Neurogenic locus notch homolog protein 3 OS=Homo sapiens GN=NOTCH3 PE=1 SV=2 Back     alignment and function description
>sp|P46530|NOTC1_DANRE Neurogenic locus notch homolog protein 1 OS=Danio rerio GN=notch1a PE=2 SV=1 Back     alignment and function description
>sp|Q9R172|NOTC3_RAT Neurogenic locus notch homolog protein 3 OS=Rattus norvegicus GN=Notch3 PE=2 SV=2 Back     alignment and function description
>sp|Q61982|NOTC3_MOUSE Neurogenic locus notch homolog protein 3 OS=Mus musculus GN=Notch3 PE=1 SV=1 Back     alignment and function description
>sp|Q99466|NOTC4_HUMAN Neurogenic locus notch homolog protein 4 OS=Homo sapiens GN=NOTCH4 PE=1 SV=2 Back     alignment and function description
>sp|Q01705|NOTC1_MOUSE Neurogenic locus notch homolog protein 1 OS=Mus musculus GN=Notch1 PE=1 SV=3 Back     alignment and function description
>sp|P78504|JAG1_HUMAN Protein jagged-1 OS=Homo sapiens GN=JAG1 PE=1 SV=3 Back     alignment and function description
>sp|Q8UWJ4|DLLD_DANRE Delta-like protein D OS=Danio rerio GN=dld PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query660
270013391 21117 hypothetical protein TcasGA2_TC011986 [T 0.836 0.026 0.559 1e-172
170059510 6860 dumpy [Culex quinquefasciatus] gi|167878 0.85 0.081 0.580 1e-169
328714521 16577 PREDICTED: hypothetical protein LOC10016 0.869 0.034 0.519 1e-165
157133857 5429 hypothetical protein AaeL_AAEL012905 [Ae 0.874 0.106 0.521 1e-164
170059512 2048 conserved hypothetical protein [Culex qu 0.883 0.284 0.519 1e-163
442625928 19560 dumpy, isoform AA [Drosophila melanogast 0.837 0.028 0.507 1e-161
442625920 18014 dumpy, isoform W [Drosophila melanogaste 0.837 0.030 0.507 1e-161
442625918 20404 dumpy, isoform V [Drosophila melanogaste 0.837 0.027 0.507 1e-160
442625916 21657 dumpy, isoform U [Drosophila melanogaste 0.837 0.025 0.507 1e-160
442625914 22300 dumpy, isoform T [Drosophila melanogaste 0.837 0.024 0.507 1e-160
>gi|270013391|gb|EFA09839.1| hypothetical protein TcasGA2_TC011986 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  611 bits (1575), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 354/633 (55%), Positives = 422/633 (66%), Gaps = 81/633 (12%)

Query: 39    NPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPNDKACIREKCADP 98
             NPCVPSPCGP S+CRDIGGSPSCSCLPNYIG+PPNCRPEC  NSEC ++ ACIREKC DP
Sbjct: 15281 NPCVPSPCGPNSECRDIGGSPSCSCLPNYIGSPPNCRPECTINSECSSNLACIREKCRDP 15340

Query: 99    CPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPPEPVQPIIQEDTCN---CVPNA 155
             CPGSCG  AQC VINHTPICTCP+G+ GD F  C PKP E V+P ++ D CN   C PNA
Sbjct: 15341 CPGSCGSGAQCSVINHTPICTCPEGYTGDPFSYCQPKPQE-VEP-VKTDPCNPSPCGPNA 15398

Query: 156   ECRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCVPGTCGEGAICDVV 215
             +C +GVC CLP+Y GD Y  CRPECV+N++CPR+KACI  KC +PC PGTCG+ A C V+
Sbjct: 15399 QCNNGVCTCLPEYQGDPYRGCRPECVLNNDCPRDKACITNKCTDPC-PGTCGQNAECSVI 15457

Query: 216   NHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREVNKQAVCSCLPNYF 275
             NH  +C+C  G TG+  +LC PI   PV TNPCQPSPCGPNSQCR VN QAVCSC+P YF
Sbjct: 15458 NHIPICSCITGYTGNAFILCSPIP-APVVTNPCQPSPCGPNSQCRVVNNQAVCSCVPGYF 15516

Query: 276   GSPPNCRPECTVNTDCPLNKACVNQKCVDPCPGSCGENRELDAQRFLVSSVCLPDYYGDG 335
             GSPP CRPEC  +++C L+KACVNQKC++PCPG+CG N             C     GD 
Sbjct: 15517 GSPPTCRPECVTSSECSLDKACVNQKCINPCPGTCGINALCQVVNHNPICSCPQGQTGDP 15576

Query: 336   YV-----------------------------------------------SCRPECVLNSD 348
             +                                                +CRPECV NS+
Sbjct: 15577 FTRCTIIVPVQEEPTNPCQLSPCGPNSQCKEINNSPSCSCLPEFTGSPPNCRPECVSNSE 15636

Query: 349   CPSNKACIRNKCKNPCVPGTCGEGAICDVF----------------LLSFTAPPPPLESP 392
             C ++ ACI  KCK+PC  GTCG+ A C V                     T P PP   P
Sbjct: 15637 CANHLACINQKCKDPCS-GTCGQNAECRVISHTPNCVCLPGYIGDPFSQCTIPKPP---P 15692

Query: 393   PEYVNPCIPSPCGPYSQCRDIGGSPSCSCLPNYIGSP-PNCRPECVMNSECPSNEACINE 451
              E + PC PSPCG  + C++  G+ SC+CLP+YIG+P   CRPECV+N++CPSN+AC+  
Sbjct: 15693 SETILPCSPSPCGANAVCKERNGAGSCTCLPDYIGNPYEGCRPECVLNTDCPSNKACVRN 15752

Query: 452   KCGDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNP 511
             KC DPCPG+CG NAQC V+NH P CTC  G+ GDPF  CS  PPEP    QE   EP NP
Sbjct: 15753 KCTDPCPGTCGQNAQCTVVNHLPQCTCIPGYTGDPFRYCS-VPPEPS--KQE---EPTNP 15806

Query: 512   CYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCP 571
             C PSPCGP SQCR++     CSCLPNYIG+PPNCRPECV +++C  +KAC+N+KC DPCP
Sbjct: 15807 CQPSPCGPNSQCREVNNQAVCSCLPNYIGSPPNCRPECVVSSECPQNKACVNQKCADPCP 15866

Query: 572   GSCGYNALCKVINHTPICTCPDGYTGDAFSGCY 604
             G+CG NA C+VINH+PIC+C  GYTGD F+ CY
Sbjct: 15867 GTCGLNARCEVINHSPICSCQTGYTGDPFTRCY 15899

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|170059510|ref|XP_001865394.1| dumpy [Culex quinquefasciatus] gi|167878260|gb|EDS41643.1| dumpy [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|328714521|ref|XP_003245382.1| PREDICTED: hypothetical protein LOC100166039 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|157133857|ref|XP_001663043.1| hypothetical protein AaeL_AAEL012905 [Aedes aegypti] gi|108870667|gb|EAT34892.1| AAEL012905-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|170059512|ref|XP_001865395.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167878261|gb|EDS41644.1| conserved hypothetical protein [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|442625928|ref|NP_001260042.1| dumpy, isoform AA [Drosophila melanogaster] gi|440213327|gb|AGB92578.1| dumpy, isoform AA [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|442625920|ref|NP_001260038.1| dumpy, isoform W [Drosophila melanogaster] gi|440213323|gb|AGB92574.1| dumpy, isoform W [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|442625918|ref|NP_001260037.1| dumpy, isoform V [Drosophila melanogaster] gi|440213322|gb|AGB92573.1| dumpy, isoform V [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|442625916|ref|NP_001260036.1| dumpy, isoform U [Drosophila melanogaster] gi|440213321|gb|AGB92572.1| dumpy, isoform U [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|442625914|ref|NP_001260035.1| dumpy, isoform T [Drosophila melanogaster] gi|440213320|gb|AGB92571.1| dumpy, isoform T [Drosophila melanogaster] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query660
FB|FBgn005319622 dp "dumpy" [Drosophila melanog 0.846 25.40 0.419 6.6e-128
ZFIN|ZDB-GENE-041001-184 8328 si:dkey-30j22.1 "si:dkey-30j22 0.751 0.059 0.260 3.2e-27
UNIPROTKB|F1PLX4 1822 NOTCH4 "Uncharacterized protei 0.766 0.277 0.256 6.9e-26
UNIPROTKB|E1BPT8 2332 LOC789485 "Uncharacterized pro 0.804 0.227 0.266 9.5e-26
RGD|620761 2319 Notch3 "notch 3" [Rattus norve 0.733 0.208 0.268 7.1e-25
UNIPROTKB|Q9R172 2319 Notch3 "Neurogenic locus notch 0.733 0.208 0.268 7.1e-25
UNIPROTKB|E2QUR0 1218 JAG1 "Delta-like protein" [Can 0.769 0.417 0.255 1.4e-24
UNIPROTKB|B4DYR1 1059 JAG1 "Delta-like protein" [Hom 0.772 0.481 0.25 3.8e-24
UNIPROTKB|A5A8X3 1994 NOTCH4 "Uncharacterized protei 0.768 0.254 0.254 4.4e-24
UNIPROTKB|P78504 1218 JAG1 "Protein jagged-1" [Homo 0.772 0.418 0.25 4.8e-24
FB|FBgn0053196 dp "dumpy" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1282 (456.3 bits), Expect = 6.6e-128, P = 6.6e-128
 Identities = 260/620 (41%), Positives = 339/620 (54%)

Query:    27 PPPPQQDVQEYVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECLQNSECPN 86
             PPPP  +  E  +PC+PSPCG  SQCR++ G PSC+CLP+++GAPPNCRPEC  ++ECP+
Sbjct: 12998 PPPPVIERVER-DPCLPSPCGLNSQCRNVQGVPSCTCLPDFLGAPPNCRPECTISAECPS 13056

Query:    87 DKACIREKCADPCPGSCGYNAQCKVINHTPICTCPDGFIGDAFLSCHPKPP-EPVQPIIQ 145
             + ACIRE+C DPCPGSCGY A+C V+NHTPIC CP GF GD F SC P PP EP Q    
Sbjct: 13057 NLACIRERCIDPCPGSCGYAAECSVVNHTPICVCPAGFTGDPFSSCRPAPPPEPTQSEYV 13116

Query:   146 EDTCN---CVPNAECRDGVCVCLPDYYGDGYVSCRPECVVNSECPRNKACIKYKCKNPCV 202
              D CN   C PNA+C  G+C CL +++GD Y  CRPECV+NS+CPR+KAC   KC NPC 
Sbjct: 13117 -DPCNPSPCGPNAQCNAGICTCLAEFHGDPYSGCRPECVLNSDCPRDKACHSSKCVNPC- 13174

Query:   203 PGTCGEGAICDVVNHAVVCTCPPGTTGSPLVLCRPIQNEPVYTNPCQPSPCGPNSQCREV 262
             PGTCGE AICDV+NH  +C CP  T GS  + C P+Q     +NPC+PSPCGPNSQCREV
Sbjct: 13175 PGTCGENAICDVINHIPMCRCPERTAGSAFIRCSPVQI--TVSNPCRPSPCGPNSQCREV 13232

Query:   263 NKQAVCSCLPNYFGSPPNCRPECTVNTDCPLNKACVNQKCVDPCPGSCGENRELDAQRFL 322
             N+QAVCSCLP++ G+PP+CRPECT N++C   +AC+NQ+C DPCPG+CG           
Sbjct: 13233 NQQAVCSCLPSFIGAPPSCRPECTSNSECAPTQACLNQRCGDPCPGTCGVGANCAVVSHS 13292

Query:   323 VSSVCLPDYYGDGYVSCRPECVLNSDCPSNKACIRNKCK-NPCVP-GTC---GEGAIC-- 375
                 C   + G+ ++ C+P+     + P       + C+ +PC P   C   GE   C  
Sbjct: 13293 PFCTCPERFTGNPFIRCQPQI----EPPVRDVAPVDPCRPSPCGPYSQCRPVGEAPACSC 13348

Query:   376 -DVFL-----------LSFTAXXXXXXXXXXYVNPCIPSPCGPYSQCRDIGGSPSCSCLP 423
              + ++            S              V+PC P  CG  ++C  +  +  C C  
Sbjct: 13349 VETYIGRPPNCRPECVTSSDCSSQLACVNQKCVDPC-PGRCGLNAECFVVSHAVQCICQQ 13407

Query:   424 NYIGSP-PNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICTCPDGF 482
              + G P   C+PE    +E       I   C  P P  CG NA C+  N    C C   +
Sbjct: 13408 GFNGDPFVQCKPEIAYENE-------IRTPCS-PSP--CGPNAVCRDRNGVGSCQCLPQY 13457

Query:   483 IGDPFTLCSXXXXXXXXXXXXXXXXXXXXCYPSP--CGPYSQCRDIGGSPSCSCLPNYIG 540
              GDP+  C                       P P  CG  + C+ +   P+C+CL  Y+G
Sbjct: 13458 FGDPYEGCRPECMLDSDCPSNRACQQLRCQDPCPGTCGLNANCQVVNHLPTCTCLTGYVG 13517

Query:   541 AP-PNCR--PECVQNNDCSNDKACINEKCQDPCPGSCGYNALCKVINHTPICTCPDGYTG 597
              P   C   PE  QN         +N  CQ P P  CG N+ C+V N   +C+C   + G
Sbjct: 13518 DPYRQCNRLPEPPQNE-------YVNP-CQ-PTP--CGPNSQCRVSNEQAVCSCLPLFVG 13566

Query:   598 DAFSGCYPKPPEQQQLKRDR 617
                S C P+     +   DR
Sbjct: 13567 TPPS-CRPECTISSECSADR 13585
GO:0007475 "apposition of dorsal and ventral imaginal disc-derived wing surfaces" evidence=IMP
GO:0005578 "proteinaceous extracellular matrix" evidence=NAS
GO:0007424 "open tracheal system development" evidence=IMP
GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA
GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA
GO:0004519 "endonuclease activity" evidence=IEA
GO:0005509 "calcium ion binding" evidence=IEA
GO:0008362 "chitin-based embryonic cuticle biosynthetic process" evidence=IMP
GO:0040005 "chitin-based cuticle attachment to epithelium" evidence=IMP
GO:0031012 "extracellular matrix" evidence=ISM
GO:0005201 "extracellular matrix structural constituent" evidence=ISM
GO:0046331 "lateral inhibition" evidence=IMP
ZFIN|ZDB-GENE-041001-184 si:dkey-30j22.1 "si:dkey-30j22.1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1PLX4 NOTCH4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BPT8 LOC789485 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|620761 Notch3 "notch 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q9R172 Notch3 "Neurogenic locus notch homolog protein 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2QUR0 JAG1 "Delta-like protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|B4DYR1 JAG1 "Delta-like protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A5A8X3 NOTCH4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P78504 JAG1 "Protein jagged-1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 660
KOG1214|consensus 1289 99.79
KOG1217|consensus487 99.64
KOG1217|consensus487 99.59
KOG4289|consensus 2531 99.57
KOG4289|consensus 2531 99.53
KOG1214|consensus1289 99.52
KOG1219|consensus 4289 99.29
KOG1219|consensus 4289 99.21
KOG0994|consensus 1758 99.13
KOG1225|consensus525 99.05
KOG1225|consensus525 99.02
KOG4260|consensus350 98.87
KOG0994|consensus 1758 98.59
KOG4260|consensus350 98.5
KOG1226|consensus783 98.18
PF0764542 EGF_CA: Calcium-binding EGF domain; InterPro: IPR0 98.1
smart0017939 EGF_CA Calcium-binding EGF-like domain. 97.96
PF0764542 EGF_CA: Calcium-binding EGF domain; InterPro: IPR0 97.92
KOG1226|consensus783 97.87
PF0000832 EGF: EGF-like domain This is a sub-family of the P 97.87
PF0000832 EGF: EGF-like domain This is a sub-family of the P 97.66
PF1294736 EGF_3: EGF domain; InterPro: IPR024731 This entry 97.65
cd0005438 EGF_CA Calcium-binding EGF-like domain, present in 97.6
smart0017939 EGF_CA Calcium-binding EGF-like domain. 97.52
KOG1836|consensus 1705 97.45
PF1294736 EGF_3: EGF domain; InterPro: IPR024731 This entry 97.38
PF06247197 Plasmod_Pvs28: Plasmodium ookinete surface protein 97.31
PF06247197 Plasmod_Pvs28: Plasmodium ookinete surface protein 97.07
cd0005438 EGF_CA Calcium-binding EGF-like domain, present in 96.99
smart0018135 EGF Epidermal growth factor-like domain. 96.82
cd0005336 EGF Epidermal growth factor domain, found in epide 96.76
KOG1836|consensus 1705 96.69
cd0005336 EGF Epidermal growth factor domain, found in epide 96.22
PF1266224 cEGF: Complement Clr-like EGF-like 96.19
smart0018135 EGF Epidermal growth factor-like domain. 95.92
PF1266224 cEGF: Complement Clr-like EGF-like 95.67
PF0797432 EGF_2: EGF-like domain; InterPro: IPR013111 A sequ 95.35
PF0797432 EGF_2: EGF-like domain; InterPro: IPR013111 A sequ 95.31
PF1266113 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E 93.58
PF1467036 FXa_inhibition: Coagulation Factor Xa inhibitory s 92.68
KOG3512|consensus 592 91.21
PF1467036 FXa_inhibition: Coagulation Factor Xa inhibitory s 91.2
smart0005163 DSL delta serrate ligand. 90.57
PF1294637 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 90.41
PF1294637 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 90.07
smart0005163 DSL delta serrate ligand. 88.67
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 83.2
cd01475224 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, 82.21
KOG1218|consensus316 81.39
KOG1218|consensus316 80.52
>KOG1214|consensus Back     alignment and domain information 
Probab=99.79  E-value=4.3e-17  Score=175.59  Aligned_cols=209  Identities=27%  Similarity=0.496  Sum_probs=144.2

Q ss_pred             CCCCCCCC--CCCCCCCceeeCCCCceeecCCCcc--CCCCCCccCC--cCCCCCCCCcccccCCCCCCCCCCCCCCCeE
Q psy13159        394 EYVNPCIP--SPCGPYSQCRDIGGSPSCSCLPNYI--GSPPNCRPEC--VMNSECPSNEACINEKCGDPCPGSCGYNAQC  467 (660)
Q Consensus       394 ~~~d~C~~--~~C~~~~~C~~~~g~~~C~C~~G~~--g~~~~C~~~C--~~~~~C~~~~~C~~~~c~~~C~~~C~~~~~C  467 (660)
                      .++++|+.  ..|.+++.|++.+++|+|.|..||.  +++.+|...=  ..++.|...            .+.|+.++.+
T Consensus       732 ~d~~eca~~~~~CGp~s~Cin~pg~~rceC~~gy~F~dd~~tCV~i~~pap~n~Ce~g------------~h~C~i~g~a  799 (1289)
T KOG1214|consen  732 VDENECATGFHRCGPNSVCINLPGSYRCECRSGYEFADDRHTCVLITPPAPANPCEDG------------SHTCAIAGQA  799 (1289)
T ss_pred             CChhhhccCCCCCCCCceeecCCCceeEEEeecceeccCCcceEEecCCCCCCccccC------------ccccCcCCce
Confidence            46677774  4599999999999999999999875  3433443210  123445544            3567666654


Q ss_pred             --eec-CCceeeeCCCCCccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCceeecCCCceeeCCCCcccCCCC
Q psy13159        468 --KVI-NHTPICTCPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPN  544 (660)
Q Consensus       468 --~~~-~g~~~C~C~~Gy~G~~c~~C~~~~~~~~~~~~~~~~~~i~eC~~~~C~~~g~C~~~~g~y~C~C~~G~~g~~~~  544 (660)
                        +.. .++|.|.|.|||.|++.. |                .++|||.++-|.++++|.+++|+|.|+|.+||+|+|..
T Consensus       800 ~c~~hGgs~y~C~CLPGfsGDG~~-c----------------~dvDeC~psrChp~A~CyntpgsfsC~C~pGy~GDGf~  862 (1289)
T KOG1214|consen  800 RCVHHGGSTYSCACLPGFSGDGHQ-C----------------TDVDECSPSRCHPAATCYNTPGSFSCRCQPGYYGDGFQ  862 (1289)
T ss_pred             EEEecCCceEEEeecCCccCCccc-c----------------ccccccCccccCCCceEecCCCcceeecccCccCCCce
Confidence              433 347999999999999853 3                67899999999999999999999999999999999987


Q ss_pred             CccCCccCCCCCCCCccccccccCCCCCCCCCCCeEEe--cCCceEeeCCCCCccCCCcCCCCCCCCCCCCCCCCCCeEe
Q psy13159        545 CRPECVQNNDCSNDKACINEKCQDPCPGSCGYNALCKV--INHTPICTCPDGYTGDAFSGCYPKPPEQQQLKRDRGGILV  622 (660)
Q Consensus       545 C~~~C~~~~~C~~~~~C~~~~C~~~c~~~C~~~~~C~~--~~g~~~C~C~~Gy~G~~c~~C~~~~~~~~~~~C~~~g~C~  622 (660)
                      |.+.=.....|...         .+-+..|+.++.|.-  .+.+|.+.|.++-.|++-..|-++++ .--..|+.+|.+.
T Consensus       863 CVP~~~~~T~C~~e---------r~hpl~chg~t~~~~~~Dp~~~e~p~~~~ppG~~~~~c~~~~~-~~vp~Cd~hgh~a  932 (1289)
T KOG1214|consen  863 CVPDTSSLTPCEQE---------RFHPLQCHGSTGFCWCVDPDGHEVPGTQTPPGSTPPHCGPSPE-QYVPQCDDHGHFA  932 (1289)
T ss_pred             ecCCCccCCccccc---------cccceeeccccceeEeeCCCcccCCCCCCCCCCCCCCCCCccc-ccCCCcccccccc
Confidence            76321111223221         011345666654321  25579999999998888777766543 2223588888888


Q ss_pred             ecCCcCCCCceeeecCCCCCC
Q psy13159        623 LLPITRRKIKYECRCRRRRGR  643 (660)
Q Consensus       623 ~~~~~~~~~~~~C~C~~Gy~g  643 (660)
                      .++-  ...++.|+|.++-++
T Consensus       933 p~qc--hG~~~~CwCvd~dGr  951 (1289)
T KOG1214|consen  933 PLQC--HGKSDFCWCVDKDGR  951 (1289)
T ss_pred             cccc--CCCcceeEEecCCCc
Confidence            6644  344599999887643

>KOG1217|consensus Back     alignment and domain information
>KOG1217|consensus Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>KOG4289|consensus Back     alignment and domain information
>KOG1214|consensus Back     alignment and domain information
>KOG1219|consensus Back     alignment and domain information
>KOG1219|consensus Back     alignment and domain information
>KOG0994|consensus Back     alignment and domain information
>KOG1225|consensus Back     alignment and domain information
>KOG1225|consensus Back     alignment and domain information
>KOG4260|consensus Back     alignment and domain information
>KOG0994|consensus Back     alignment and domain information
>KOG4260|consensus Back     alignment and domain information
>KOG1226|consensus Back     alignment and domain information
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins Back     alignment and domain information
>smart00179 EGF_CA Calcium-binding EGF-like domain Back     alignment and domain information
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins Back     alignment and domain information
>KOG1226|consensus Back     alignment and domain information
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins Back     alignment and domain information
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins Back     alignment and domain information
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins Back     alignment and domain information
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins Back     alignment and domain information
>smart00179 EGF_CA Calcium-binding EGF-like domain Back     alignment and domain information
>KOG1836|consensus Back     alignment and domain information
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins Back     alignment and domain information
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium Back     alignment and domain information
>PF06247 Plasmod_Pvs28: Plasmodium ookinete surface protein Pvs28; InterPro: IPR010423 This family consists of several ookinete surface protein (Pvs28) from several species of Plasmodium Back     alignment and domain information
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins Back     alignment and domain information
>smart00181 EGF Epidermal growth factor-like domain Back     alignment and domain information
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium Back     alignment and domain information
>KOG1836|consensus Back     alignment and domain information
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium Back     alignment and domain information
>PF12662 cEGF: Complement Clr-like EGF-like Back     alignment and domain information
>smart00181 EGF Epidermal growth factor-like domain Back     alignment and domain information
>PF12662 cEGF: Complement Clr-like EGF-like Back     alignment and domain information
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins Back     alignment and domain information
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins Back     alignment and domain information
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A Back     alignment and domain information
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A Back     alignment and domain information
>KOG3512|consensus Back     alignment and domain information
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A Back     alignment and domain information
>smart00051 DSL delta serrate ligand Back     alignment and domain information
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein Back     alignment and domain information
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein Back     alignment and domain information
>smart00051 DSL delta serrate ligand Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity Back     alignment and domain information
>KOG1218|consensus Back     alignment and domain information
>KOG1218|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query660
1oig_A24 The Solution Structure Of The Dpy Module From The D 4e-04
>pdb|1OIG|A Chain A, The Solution Structure Of The Dpy Module From The Dumpy Protein Length = 24 Back     alignment and structure 
Iteration: 1

 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 18/24 (75%), Positives = 23/24 (95%)
Query: 433 RPECVMNSECPSNEACINEKCGDP 456
           RPECV+NS+CPSN+AC+N+KC DP
Sbjct: 1   RPECVLNSDCPSNQACVNQKCRDP 24

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query660
1nfu_B195 Coagulation factor XA, light chain; hydrolase; HET 7e-06
1uzk_A162 Fibrillin-1; glycoprotein, extra-cellular matrix, 4e-05
3k6s_B687 Integrin beta-2; cell receptor, adhesion molecule, 4e-04
2bou_A143 EGF-like module containing mucin-like hormone rece 5e-04
3t5o_A913 Complement component C6; macpf, MAC, membrane atta 6e-04
3h5c_B317 Vitamin K-dependent protein Z; protein Z-protein Z 8e-04
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Length = 195 Back     alignment and structure
 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 36/220 (16%), Positives = 62/220 (28%), Gaps = 43/220 (19%)

Query: 360 CKNPCVPGTCGEGAICDVFLLSFTAPPPPLESPPEY--VNPCIPSPCGPYSQCRDIGGSP 417
            +  C+  TC      +VF           E   +Y   + C  SPC    +C+D  G  
Sbjct: 8   LERECMEETCSYEEAREVF----EDSDKTNEFWNKYKDGDQCETSPCQNQGKCKDGLGEY 63

Query: 418 SCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICT 477
           +C+CL  + G   NC  E      C  +              +   +  C    ++ +C+
Sbjct: 64  TCTCLEGFEG--KNC--ELFTRKLCSLD--------------NGDCDQFCHEEQNSVVCS 105

Query: 478 CPDGFIGDPFTLCSPKPPEPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPN 537
           C  G+                        +   P  P PCG  +  R        +    
Sbjct: 106 CARGYTLA---DNG---------------KACIPTGPYPCGKQTLERRKRSVAQATSSSG 147

Query: 538 YIGAPPNCRP-ECVQNNDCSNDKACINEKCQDPCPGSCGY 576
                   +P +    +   N    ++     P  G    
Sbjct: 148 EAPDSITWKPYDAADLDPTENPFDLLDFNQTQPERGDNNL 187
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Length = 162 Back     alignment and structure
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Length = 687 Back     alignment and structure
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Length = 143 Back     alignment and structure
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B* Length = 913 Back     alignment and structure
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Length = 317 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query660
4fbr_A267 Lectin, myxobacterial hemagglutinin; beta-barrel, 99.81
2vj3_A135 Neurogenic locus notch homolog protein 1; transcri 99.8
2vj3_A135 Neurogenic locus notch homolog protein 1; transcri 99.8
4fbr_A267 Lectin, myxobacterial hemagglutinin; beta-barrel, 99.8
1z1y_A186 Ookinete surface protein PVS25; four EGF-like doma 99.8
1z1y_A186 Ookinete surface protein PVS25; four EGF-like doma 99.76
2ygq_A324 WIF-1, WNT inhibitory factor 1; signaling protein, 99.73
4d90_A143 EGF-like repeat and discoidin I-like domain-conta 99.71
2vj2_A169 Jagged-1; signalling, polymorphism, glycoprotein, 99.69
4d90_A143 EGF-like repeat and discoidin I-like domain-conta 99.68
2ygq_A324 WIF-1, WNT inhibitory factor 1; signaling protein, 99.67
1yo8_A634 Thrombospondin-2; EGF, Ca(2+)-binding domains, lec 99.66
1yo8_A 634 Thrombospondin-2; EGF, Ca(2+)-binding domains, lec 99.65
3fcs_B690 Integrin beta-3; beta propeller, rossmann fold, EG 99.65
2bou_A143 EGF-like module containing mucin-like hormone rece 99.63
1uzk_A162 Fibrillin-1; glycoprotein, extra-cellular matrix, 99.63
1uzk_A162 Fibrillin-1; glycoprotein, extra-cellular matrix, 99.63
2bou_A143 EGF-like module containing mucin-like hormone rece 99.59
2vj2_A169 Jagged-1; signalling, polymorphism, glycoprotein, 99.56
3fcs_B690 Integrin beta-3; beta propeller, rossmann fold, EG 99.54
1dx5_I118 Thrombomodulin; serine proteinase, EGF-like domain 99.45
2w86_A147 Fibrillin-1, fibrillin1; phosphoprotein, EGF-like 99.44
2w86_A147 Fibrillin-1, fibrillin1; phosphoprotein, EGF-like 99.41
1dx5_I118 Thrombomodulin; serine proteinase, EGF-like domain 99.4
1emn_A82 Fibrillin; extracellular matrix, calcium-binding, 99.36
3k6s_B687 Integrin beta-2; cell receptor, adhesion molecule, 99.36
2gy5_A423 Angiopoietin-1 receptor; ligand-binding domain, tr 99.28
1lmj_A86 Fibrillin 1; EGF, calcium, microfibril, neonatal, 99.24
1emn_A82 Fibrillin; extracellular matrix, calcium-binding, 99.22
3k6s_B687 Integrin beta-2; cell receptor, adhesion molecule, 99.22
1tpg_A91 T-plasminogen activator F1-G; plasminogen activati 99.22
1aut_L114 Activated protein C; serine proteinase, plasma cal 99.19
1x7a_L146 Coagulation factor IX, light chain; inhibition, bl 99.18
1lmj_A86 Fibrillin 1; EGF, calcium, microfibril, neonatal, 99.15
1z6c_A87 Vitamin K-dependent protein S; EGF module, blood c 99.15
1tpg_A91 T-plasminogen activator F1-G; plasminogen activati 99.15
1aut_L114 Activated protein C; serine proteinase, plasma cal 99.05
1nfu_B195 Coagulation factor XA, light chain; hydrolase; HET 99.05
2gy5_A423 Angiopoietin-1 receptor; ligand-binding domain, tr 99.04
2c4f_L142 Coagulation factor VII precursor; blood coagulatio 99.04
2vh0_B134 Activated factor XA light chain; serine protease, 99.04
4aqs_A525 Laminin subunit beta-1; cell adhesion; HET: NAG BM 98.98
1x7a_L146 Coagulation factor IX, light chain; inhibition, bl 98.97
1z6c_A87 Vitamin K-dependent protein S; EGF module, blood c 98.94
4aqs_A525 Laminin subunit beta-1; cell adhesion; HET: NAG BM 98.92
2w2n_E107 LDL receptor, low-density lipoprotein receptor; hy 98.89
1nfu_B195 Coagulation factor XA, light chain; hydrolase; HET 98.88
3h5c_B317 Vitamin K-dependent protein Z; protein Z-protein Z 98.87
2vh0_B134 Activated factor XA light chain; serine protease, 98.85
2c4f_L142 Coagulation factor VII precursor; blood coagulatio 98.82
2w2n_E107 LDL receptor, low-density lipoprotein receptor; hy 98.8
3u7u_G55 Neuregulin 1; signaling protein, transferase-trans 98.69
3h5c_B 317 Vitamin K-dependent protein Z; protein Z-protein Z 98.63
1n7d_A699 LDL receptor, low-density lipoprotein receptor; fa 98.59
2p28_B217 Integrin beta-2; hybrid domain, PSI domain, I-EGF 98.59
1edm_B39 Factor IX; epidermal growth factor, EGF, calcium- 98.56
2p28_B217 Integrin beta-2; hybrid domain, PSI domain, I-EGF 98.55
1klo_A162 Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: 98.53
1n7d_A 699 LDL receptor, low-density lipoprotein receptor; fa 98.51
3m0c_C 791 LDL receptor, low-density lipoprotein receptor; pr 98.48
1klo_A162 Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: 98.44
3p5b_L400 Low density lipoprotein receptor variant; B-propel 98.36
3m0c_C791 LDL receptor, low-density lipoprotein receptor; pr 98.36
3v65_B386 Low-density lipoprotein receptor-related protein; 98.35
3u7u_G55 Neuregulin 1; signaling protein, transferase-trans 98.27
1edm_B39 Factor IX; epidermal growth factor, EGF, calcium- 98.26
2k2s_B61 Micronemal protein 6; microneme protein complex, c 98.2
3p5b_L 400 Low density lipoprotein receptor variant; B-propel 98.18
1egf_A53 Epidermal growth factor; NMR {Mus musculus} SCOP: 98.16
3v65_B 386 Low-density lipoprotein receptor-related protein; 98.12
1a3p_A45 Epidermal growth factor; disulfide connectivities, 97.98
2k2s_B61 Micronemal protein 6; microneme protein complex, c 97.89
1k36_A46 Epiregulin; EGF-like fold, hormone/growth factor c 97.87
1hae_A63 Heregulin-alpha; growth factor; NMR {Homo sapiens} 97.85
1egf_A53 Epidermal growth factor; NMR {Mus musculus} SCOP: 97.78
2wg3_C463 Hedgehog-interacting protein; lipoprotein, develop 97.66
1a3p_A45 Epidermal growth factor; disulfide connectivities, 97.61
3zyj_B426 Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA 97.57
1k36_A46 Epiregulin; EGF-like fold, hormone/growth factor c 97.54
2wg3_C463 Hedgehog-interacting protein; lipoprotein, develop 97.47
2kl7_A71 Fibulin-4; secreted, calcium, disease mutation, di 97.45
3ca7_A52 Protein spitz; argos, EGF, developmental protein, 97.43
3ca7_A52 Protein spitz; argos, EGF, developmental protein, 97.42
1apq_A53 Complement protease C1R; EGF, calcium binding, ser 97.41
1ob1_C99 Major merozoite surface protein; immune system, im 97.35
3zyj_B426 Netrin-G1; cell adhesion, synapse; HET: NAG BMA MA 97.35
1hae_A63 Heregulin-alpha; growth factor; NMR {Homo sapiens} 97.33
1nql_B53 Epidermal growth factor; cell surface receptor, ty 97.14
1gl4_A285 Nidogen-1, entactin; immunoglobulin-like domain, e 97.1
1n1i_A105 Merozoite surface protein-1; MSP1, malaria, surfac 97.05
2jkh_L55 Factor X light chain; plasma, calcium, zymogen, se 96.98
1apq_A53 Complement protease C1R; EGF, calcium binding, ser 96.97
2kl7_A71 Fibulin-4; secreted, calcium, disease mutation, di 96.9
1kli_L69 Factor VIIA; extrinsic coagulation pathway, serine 96.84
1nql_B53 Epidermal growth factor; cell surface receptor, ty 96.84
1ob1_C99 Major merozoite surface protein; immune system, im 96.75
2jkh_L55 Factor X light chain; plasma, calcium, zymogen, se 96.54
1g1s_A162 P-selectin; selectin, lectin, EGF, sulphated, SLEX 96.5
2fd6_A122 Urokinase-type plasminogen activator; UPAR, ATF, A 96.46
1kli_L69 Factor VIIA; extrinsic coagulation pathway, serine 96.33
1gl4_A285 Nidogen-1, entactin; immunoglobulin-like domain, e 96.28
1n1i_A105 Merozoite surface protein-1; MSP1, malaria, surfac 96.21
1g1s_A162 P-selectin; selectin, lectin, EGF, sulphated, SLEX 95.95
3ltf_D58 Protein spitz; receptor-ligand complex ectodomain 95.9
1kig_L51 Factor XA; glycoprotein, serine protease, plasma, 95.83
1q4g_A553 Prostaglandin G/H synthase 1; cyclooxygenase, non- 95.73
3ltf_D58 Protein spitz; receptor-ligand complex ectodomain 95.55
3nt1_A587 Prostaglandin-endoperoxide synthase 2; prostagland 95.47
2fd6_A122 Urokinase-type plasminogen activator; UPAR, ATF, A 95.47
1kig_L51 Factor XA; glycoprotein, serine protease, plasma, 95.04
2bz6_L53 Blood coagulation factor VIIA; serine protease, en 94.82
1q4g_A 553 Prostaglandin G/H synthase 1; cyclooxygenase, non- 94.1
3cfw_A164 L-selectin; EGF, cell adhesion, EGF-like domain, g 93.88
1szb_A170 Mannose binding lectin-associated serine protease- 93.79
3nt1_A 587 Prostaglandin-endoperoxide synthase 2; prostagland 93.63
2bz6_L53 Blood coagulation factor VIIA; serine protease, en 93.42
1xdt_R79 Hbegf, heparin-binding epidermal growth factor; co 92.83
3cfw_A164 L-selectin; EGF, cell adhesion, EGF-like domain, g 92.73
1szb_A170 Mannose binding lectin-associated serine protease- 92.39
1g1t_A157 E-selectin; EGF, adhesion molecule, SLEX, immune s 92.28
1iox_A50 Betacellulin; EGF-like fold, hormone/growth factor 92.05
2wph_E59 Coagulation factor IXA light chain; serine proteas 91.93
1iox_A50 Betacellulin; EGF-like fold, hormone/growth factor 91.87
3e50_C50 Protransforming growth factor alpha; IDE, TGF-alph 91.83
2i9a_A145 Urokinase-type plasminogen activator; growth facto 91.68
2rnl_A50 Amphiregulin; AR, colorectum cell-derived growth f 91.56
1g1t_A157 E-selectin; EGF, adhesion molecule, SLEX, immune s 91.54
2rnl_A50 Amphiregulin; AR, colorectum cell-derived growth f 91.29
1oig_A26 Dumpy, CG33196-PB; structural protein; NMR {Drosop 91.01
3e50_C50 Protransforming growth factor alpha; IDE, TGF-alph 90.83
2wph_E59 Coagulation factor IXA light chain; serine proteas 89.96
2y38_A403 Laminin subunit alpha-5; structural protein, cell 89.64
3asi_A410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 89.57
1xdt_R79 Hbegf, heparin-binding epidermal growth factor; co 89.23
4aqt_A375 Laminin subunit gamma-1; cell adhesion; HET: NAG B 88.54
2ygo_A188 WIF-1, WNT inhibitory factor 1; signaling protein, 88.16
2e26_A725 Reelin, reeler protein; signaling protein; HET: NA 87.41
2y38_A403 Laminin subunit alpha-5; structural protein, cell 87.26
1nzi_A159 Complement C1S component; calcium, innate immunity 86.71
2i9a_A145 Urokinase-type plasminogen activator; growth facto 86.42
4aqt_A375 Laminin subunit gamma-1; cell adhesion; HET: NAG B 85.99
2ygo_A188 WIF-1, WNT inhibitory factor 1; signaling protein, 85.66
3f1s_B283 Vitamin K-dependent protein Z; PZ, ZPI, complex, s 84.82
3asi_A410 Neurexin-1-alpha; beta-sandwich, cell adhesion, sy 83.46
1b9w_A95 Protein (merozoite surface protein 1); MSP-1, cand 82.99
2p26_A280 Integrin beta-2; hybrid domain, PSI domain, I-EGF 81.69
3qcw_A1245 Neurexin-1-alpha; synaptic adhesion molecule, cell 81.19
1oig_A26 Dumpy, CG33196-PB; structural protein; NMR {Drosop 81.02
3v64_C349 Agrin; beta propeller, laminin-G, signaling, prote 80.73
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A* Back     alignment and structure
Probab=99.81  E-value=3.9e-24  Score=211.42  Aligned_cols=257  Identities=6%  Similarity=-0.078  Sum_probs=170.0

Q ss_pred             eeecCCCceeeecCCC---ccCCCCCCcCCC-ccCCCCCCCCCccCCcccCCCCCCCCCCccccccCceeeEecCCCccc
Q psy13159        258 QCREVNKQAVCSCLPN---YFGSPPNCRPEC-TVNTDCPLNKACVNQKCVDPCPGSCGENRELDAQRFLVSSVCLPDYYG  333 (660)
Q Consensus       258 ~C~~~~g~y~C~C~~G---y~g~~~~C~~~C-~~~~~C~~~~~C~~~~C~~~c~g~C~~~~~~~~~~~~~~C~C~~G~~g  333 (660)
                      ++.|..|+|++.+.+|   |+|.  +++..+ +....|...             |+|++      ...+|+|.|++||+|
T Consensus         5 ~~~n~~Gg~s~~~~pgg~~~~g~--~~~~n~~~~~~~c~ng-------------G~C~~------g~~~y~C~Cp~Gf~G   63 (267)
T 4fbr_A            5 LVQNQWGGSQATWNPGGLWLIGA--RDKQNVVALDIKSDDG-------------GKTLK------GTMTYNGEGPIGFRG   63 (267)
T ss_dssp             EEEEECSSTTSCCEEEEEEECCC--CSSCCEEEEEEECSST-------------TSEEE------EEEEETTSCCEEEEE
T ss_pred             eEeecCCcccCCcCCCCceeecc--ccccccccCCCCcCCC-------------CeecC------CCCCeEEeCCCCccc
Confidence            4667888999999888   4444  333111 111122223             33322      267899999999999


Q ss_pred             CCcccccCCccCCCCCCCCcccccCCCCCCCCCCccCCCCeeeecCCCeeecCCCCCCCCCCCCCCCCCCCCCCCceeeC
Q psy13159        334 DGYVSCRPECVLNSDCPSNKACIRNKCKNPCVPGTCGEGAICDVFLLSFTAPPPPLESPPEYVNPCIPSPCGPYSQCRDI  413 (660)
Q Consensus       334 ~~~~~c~~~C~~~~~C~~~~~C~~~~c~~~C~~~~C~~g~~C~~~~~~~~C~c~~g~~~~~~~d~C~~~~C~~~~~C~~~  413 (660)
                      ..++..+++|+..               ..|.+.+|+++++|..           |.. ++++++|++.||.++++|++.
T Consensus        64 ~~Ce~ni~ec~~~---------------~~c~s~pC~nggtc~~-----------G~~-c~~~~eC~s~pC~ngG~C~~~  116 (267)
T 4fbr_A           64 TLSSANNYTVENQ---------------WGGTSAPWQPGGVWVL-----------GAR-DKQNIVAVSIKSNDGGKTLTG  116 (267)
T ss_dssp             EECSTTEEEEEEE---------------SSSTTSCEEEEEEEEC-----------CCC-SSCCEEEEEEECSSTTSEEEE
T ss_pred             ccccccccccccc---------------cCcCCCcccCCCeeec-----------cCc-cccccccCCCCCCCCCEEecC
Confidence            9766666655432               1355677777777642           222 345679999999999999999


Q ss_pred             CCCceeecCCCccCCCCCCccCCcCCCCCCCCcccccCCCCCCCCCCCCCCCeEeecCCceeeeCCCCCccCCCCcCCCC
Q psy13159        414 GGSPSCSCLPNYIGSPPNCRPECVMNSECPSNEACINEKCGDPCPGSCGYNAQCKVINHTPICTCPDGFIGDPFTLCSPK  493 (660)
Q Consensus       414 ~g~~~C~C~~G~~g~~~~C~~~C~~~~~C~~~~~C~~~~c~~~C~~~C~~~~~C~~~~g~~~C~C~~Gy~G~~c~~C~~~  493 (660)
                      ..+|+|.|++||+|.  +|+.   ++++|+....|.        ..+|++.++|+              .|..+.     
T Consensus       117 ~~sy~C~C~~Gf~G~--~Ce~---~~d~C~n~~~c~--------s~pC~ngg~c~--------------~G~~c~-----  164 (267)
T 4fbr_A          117 TTTYNGEGPIGFKSE--VTDG---DTYSVENQWGGS--------AAPWHSGGVWV--------------LGTRGK-----  164 (267)
T ss_dssp             EEEETTSCCEEEEEE--ECCC---CEEEEEEECSST--------TSCCEEEEEEE--------------CCSSTT-----
T ss_pred             CccEEeeCCCCcccc--CCCC---CcccccccCCcC--------CccccCCccee--------------cccccc-----
Confidence            999999999999999  8874   345543331111        12444444432              354332     


Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCceeecCCCceeeCCCCcccCCCCCccCCccCCCCCCCCccccccccCCCCCC
Q psy13159        494 PPEPRPPPQEDVPEPVNPCYPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCRPECVQNNDCSNDKACINEKCQDPCPGS  573 (660)
Q Consensus       494 ~~~~~~~~~~~~~~~i~eC~~~~C~~~g~C~~~~g~y~C~C~~G~~g~~~~C~~~C~~~~~C~~~~~C~~~~C~~~c~~~  573 (660)
                                   .+|+ |.+.+|.++++|++..++|+|.|++||+|.  .|+   .++++|....              
T Consensus       165 -------------~~i~-c~~~~c~ngg~C~dg~~~y~C~Cp~Gf~G~--~c~---~~i~ec~~~~--------------  211 (267)
T 4fbr_A          165 -------------QNVI-NVDAKSNDGGKTLSGTMTYNGEGPIGFRGT--LTS---PDTYTVENQW--------------  211 (267)
T ss_dssp             -------------SCEE-EEEEECSSTTSEEEEEEEETTSCCEEEEEE--EEE---TTEEEEEEEC--------------
T ss_pred             -------------cccc-cCCCCCCCCCEeeCCCCCeEEeCCCCcccc--ccc---cccceeccCC--------------
Confidence                         3343 446789999999999999999999999998  665   2333333211              


Q ss_pred             CCCCCeEEecCCceEeeCCCCCccCCCcCCCCCCCCCCCCCCCCCCeEeecCCcCCCCceeeecCCCCCCc
Q psy13159        574 CGYNALCKVINHTPICTCPDGYTGDAFSGCYPKPPEQQQLKRDRGGILVLLPITRRKIKYECRCRRRRGRK  644 (660)
Q Consensus       574 C~~~~~C~~~~g~~~C~C~~Gy~G~~c~~C~~~~~~~~~~~C~~~g~C~~~~~~~~~~~~~C~C~~Gy~g~  644 (660)
                      ....+.|.+ .++|.+.|.+|+.+..++           .||.++|+|++.     +++|+|+|++||+|+
T Consensus       212 ~c~~~~c~~-gG~~~~~C~~g~n~~~c~-----------~~c~ngGtC~dg-----~~sy~CeCp~GF~G~  265 (267)
T 4fbr_A          212 GGSTAPWNP-GGFWMIGARNGQNVVALN-----------VASSDGGKTLAG-----TMIYNGEGPIGFRAR  265 (267)
T ss_dssp             SCTTSCCEE-EEEEECCCCTTCCEEEEE-----------EECSSTTSEEEE-----EEEETTSCCEEEEEE
T ss_pred             CccCCcccC-CCeEEEecCCCCccccCC-----------cCCCCCCEeeCC-----CcceeecCCCCcccc
Confidence            111233333 245667788888776654           258899999986     789999999999764
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Back     alignment and structure
>2vj3_A Neurogenic locus notch homolog protein 1; transcription, metal-binding, transmembrane, developmental protein, notch signaling pathway; 2.60A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A 2rr2_A* Back     alignment and structure
>4fbr_A Lectin, myxobacterial hemagglutinin; beta-barrel, HIV-inactivating, carbohydrate binding protein; 1.60A {Myxococcus xanthus} PDB: 4fbv_A* Back     alignment and structure
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Back     alignment and structure
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A 1z3g_A Back     alignment and structure
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Back     alignment and structure
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Back     alignment and structure
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Back     alignment and structure
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD finger, cell adhesion, innate immunity, extracellular MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens} Back     alignment and structure
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: PCF NAG FUC SCR; 3.95A {Homo sapiens} Back     alignment and structure
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Back     alignment and structure
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain, disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB: 2rhp_A* Back     alignment and structure
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Back     alignment and structure
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Back     alignment and structure
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Back     alignment and structure
>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A Back     alignment and structure
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2 precursor; CD97, CD55, 7TM, calcium-binding, cell adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB: 2bo2_A 2box_A Back     alignment and structure
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular, developmental protein, notch signaling pathway, EGF, DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB: 2kb9_A Back     alignment and structure
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell adhesion, DI mutation, glycoprotein, HOST-virus interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo sapiens} PDB: 4g1e_B* 3ije_B* 4g1m_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B* Back     alignment and structure
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Back     alignment and structure
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Back     alignment and structure
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease mutation, craniosynostosis, extracellular matrix, fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens} Back     alignment and structure
>1dx5_I Thrombomodulin; serine proteinase, EGF-like domains, anticoagulant complex, antifibrinolytic complex, hydrolase-hydrolase inhibitor COM; HET: AR7 NDG; 2.30A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.3.11.1 PDB: 3gis_X 1dqb_A* 1zaq_A 1adx_A 2adx_A Back     alignment and structure
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Back     alignment and structure
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Back     alignment and structure
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Back     alignment and structure
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Back     alignment and structure
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein, repeat, signal, multigene family, disease mutation, matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 1emo_A Back     alignment and structure
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion, pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo sapiens} PDB: 3k71_B* 3k72_B* Back     alignment and structure
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Back     alignment and structure
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Back     alignment and structure
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Back     alignment and structure
>1lmj_A Fibrillin 1; EGF, calcium, microfibril, neonatal, marfan syndrome, connective tissue, extracellular matrix, structural protein; NMR {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 Back     alignment and structure
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Back     alignment and structure
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A Back     alignment and structure
>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L* Back     alignment and structure
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Back     alignment and structure
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET: NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B* Back     alignment and structure
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Back     alignment and structure
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Back     alignment and structure
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Back     alignment and structure
>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L* Back     alignment and structure
>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens} Back     alignment and structure
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A {Mus musculus} Back     alignment and structure
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Back     alignment and structure
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L* Back     alignment and structure
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Back     alignment and structure
>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ... Back     alignment and structure
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ... Back     alignment and structure
>2w2n_E LDL receptor, low-density lipoprotein receptor; hydrolase-receptor complex, PCSK9, proprotein converta low-density lipoprotein receptor, EGF; 2.30A {Homo sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E 3gcx_E 1hz8_A 1i0u_A 1hj7_A Back     alignment and structure
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens} Back     alignment and structure
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor complex, blood coagulation, CL PAIR of basic residues, disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A {Homo sapiens} Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A Back     alignment and structure
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Back     alignment and structure
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A Back     alignment and structure
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Back     alignment and structure
>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>3u7u_G Neuregulin 1; signaling protein, transferase-transferase regulator complex glycosylation; HET: NAG; 3.03A {Homo sapiens} Back     alignment and structure
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A Back     alignment and structure
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A Back     alignment and structure
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L Back     alignment and structure
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A Back     alignment and structure
>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} Back     alignment and structure
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1 Back     alignment and structure
>2k2s_B Micronemal protein 6; microneme protein complex, cell adhesion, cytoplasmic vesicl lectin, virulence, EGF-like domain, membrane; NMR {Toxoplasma gondii} PDB: 2k2t_A Back     alignment and structure
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A Back     alignment and structure
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A Back     alignment and structure
>1egf_A Epidermal growth factor; NMR {Mus musculus} SCOP: g.3.11.1 PDB: 1epg_A 1eph_A 1epi_A 1epj_A 3egf_A 1gk5_A Back     alignment and structure
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A Back     alignment and structure
>1a3p_A Epidermal growth factor; disulfide connectivities, EGF-like domain, repeat; HET: ABA; NMR {Mus musculus} SCOP: g.3.11.1 Back     alignment and structure
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>1k36_A Epiregulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1k37_A Back     alignment and structure
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A Back     alignment and structure
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens} Back     alignment and structure
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D Back     alignment and structure
>3ca7_A Protein spitz; argos, EGF, developmental protein, differentiation, EGF-like domain, endoplasmic reticulum, glycoprotein, golgi apparatus; 1.50A {Drosophila melanogaster} PDB: 3c9a_C 3ltg_D Back     alignment and structure
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Back     alignment and structure
>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A Back     alignment and structure
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1haf_A 1hre_A 1hrf_A Back     alignment and structure
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C* Back     alignment and structure
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A Back     alignment and structure
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4 Back     alignment and structure
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Back     alignment and structure
>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1 Back     alignment and structure
>2kl7_A Fibulin-4; secreted, calcium, disease mutation, disulfide bond, EGF- like domain, glycoprotein, polymorphism, structural genomics, PSI-2; NMR {Homo sapiens} Back     alignment and structure
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Back     alignment and structure
>1nql_B Epidermal growth factor; cell surface receptor, tyrosine kinase, glycoprotein, endoso growth factor, auto-inhibition; HET: NAG BMA; 2.80A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ivo_C* 2kv4_A 1jl9_A 1p9j_A 3njp_C* Back     alignment and structure
>1ob1_C Major merozoite surface protein; immune system, immunoglobulin/complex, immunoglobulin, antib fragment, MSP1-19, EGF-like domain; 2.90A {Plasmodium falciparum} SCOP: g.3.11.4 g.3.11.4 PDB: 1cej_A 2flg_A Back     alignment and structure
>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ... Back     alignment and structure
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A Back     alignment and structure
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A Back     alignment and structure
>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L* Back     alignment and structure
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2 g.3.11.5 PDB: 1h4u_A Back     alignment and structure
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen, glycoprotein, EGF domain, cell adhesion; HET: HIS; 2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4 g.3.11.4 Back     alignment and structure
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A* 1fsb_A Back     alignment and structure
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster} Back     alignment and structure
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Back     alignment and structure
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... Back     alignment and structure
>3ltf_D Protein spitz; receptor-ligand complex ectodomain cysteine rich domain EGF ATP-binding, kinase, nucleotide-binding, receptor; HET: NAG MAN; 3.20A {Drosophila melanogaster} Back     alignment and structure
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ... Back     alignment and structure
>2fd6_A Urokinase-type plasminogen activator; UPAR, ATF, ATN-615 antibody, FAB, ternary complex, immune SY hydrolase; HET: PGE NAG FUC NDG PG4; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 3bt2_A* 3bt1_A* 3u73_A* 1urk_A* 3laq_A* 1kdu_A Back     alignment and structure
>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1 Back     alignment and structure
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Back     alignment and structure
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal anti-inflammatory drug, peroxi prostaglandin synthase, EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A {Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A* 2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A* 2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A* 1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ... Back     alignment and structure
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein, membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A {Homo sapiens} Back     alignment and structure
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Back     alignment and structure
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase, cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM; 1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A* 3ntb_A* 3q7d_A* 4fm5_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A* 6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A* 3hs6_A* 3hs7_A* ... Back     alignment and structure
>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L* Back     alignment and structure
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1 Back     alignment and structure
>1szb_A Mannose binding lectin-associated serine protease-2 related protein, MAP19 (19KDA)...; calcium, complement, innate immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Back     alignment and structure
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A Back     alignment and structure
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A Back     alignment and structure
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Back     alignment and structure
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR {Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A Back     alignment and structure
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A Back     alignment and structure
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A* Back     alignment and structure
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Back     alignment and structure
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A Back     alignment and structure
>2rnl_A Amphiregulin; AR, colorectum cell-derived growth factor, EGF-like domain, CRDGF, cytokine, glycoprotein, membrane, polymorphism, transmembrane; NMR {Homo sapiens} Back     alignment and structure
>3e50_C Protransforming growth factor alpha; IDE, TGF-alpha, cytoplasm, hydrolase, metal-binding, metalloprotease, polymorphism, protease, zinc; 2.30A {Homo sapiens} SCOP: g.3.11.1 PDB: 1yuf_A 1yug_A 2tgf_A 1mox_C 3tgf_A 4tgf_A Back     alignment and structure
>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B* Back     alignment and structure
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Back     alignment and structure
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex (toxin-growth factor), diphtheria toxin, receptor, H binding epidermal growth factor; 2.65A {Homo sapiens} SCOP: g.3.11.1 Back     alignment and structure
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Back     alignment and structure
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* Back     alignment and structure
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus musculus} PDB: 3a7q_A* Back     alignment and structure
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion, basement membrane; HET: NAG; 2.90A {Mus musculus} Back     alignment and structure
>1nzi_A Complement C1S component; calcium, innate immunity, modular structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens} SCOP: b.23.1.1 g.3.11.1 Back     alignment and structure
>2i9a_A Urokinase-type plasminogen activator; growth factor-like domain, kringle domain, hydrolase; 1.90A {Homo sapiens} SCOP: g.3.11.1 g.14.1.1 PDB: 2i9b_A* Back     alignment and structure
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus musculus} Back     alignment and structure
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A* Back     alignment and structure
>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens} Back     alignment and structure
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus} Back     alignment and structure
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria vaccine, surface antigen; 1.80A {Plasmodium cynomolgi} SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A Back     alignment and structure
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B* 1yuk_A* 2p28_A* Back     alignment and structure
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A* Back     alignment and structure
>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 660
d1oiga_26 g.3.18.1 (A:) Dumpy {Fruit fly (Drosophila melanog 0.004
>d1oiga_ g.3.18.1 (A:) Dumpy {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 26 Back     information, alignment and structure

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: DPY module
family: DPY module
domain: Dumpy
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 32.8 bits (74), Expect = 0.004
 Identities = 18/24 (75%), Positives = 23/24 (95%)

Query: 433 RPECVMNSECPSNEACINEKCGDP 456
           RPECV+NS+CPSN+AC+N+KC DP
Sbjct: 1   RPECVLNSDCPSNQACVNQKCRDP 24

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query660
d1edmb_39 Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 98.85
d2vj3a142 Neurogenic locus notch homolog protein 1, Notch1 { 98.83
d2c4fl137 Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} 98.82
d2vj3a239 Neurogenic locus notch homolog protein 1, Notch1 { 98.79
d2vj3a335 Neurogenic locus notch homolog protein 1, Notch1 { 98.65
d1xkba139 Factor X, N-terminal module {Human (Homo sapiens) 98.63
d1emoa143 Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} 98.61
d1edmb_39 Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606 98.58
d2vj3a142 Neurogenic locus notch homolog protein 1, Notch1 { 98.57
d2c4fl137 Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} 98.56
d2vj3a239 Neurogenic locus notch homolog protein 1, Notch1 { 98.54
d2vj3a335 Neurogenic locus notch homolog protein 1, Notch1 { 98.4
d1emoa143 Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} 98.38
d1xkba139 Factor X, N-terminal module {Human (Homo sapiens) 98.35
d1lmja144 Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} 98.33
d1g1ta239 E-selectin, EGF-domain {Human (Homo sapiens) [TaxI 98.31
d1g1sa240 E-selectin, EGF-domain {Human (Homo sapiens) [TaxI 98.27
d1autl148 Activated protein c (autoprothrombin IIa) {Human ( 98.22
d1uzka143 Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} 98.21
d1q4ga242 Prostaglandin H2 synthase-1, EGF-like module {Shee 98.2
d1tpga141 Plasminogen activator (tissue-type), t-PA {Human ( 98.13
d1lmja242 Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} 98.13
d1gl4a240 EGF-like domain of nidogen-1 {Mouse (Mus musculus) 98.12
d1lmja144 Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} 98.08
d1g1ta239 E-selectin, EGF-domain {Human (Homo sapiens) [TaxI 98.07
d1cvua241 Prostaglandin H2 synthase-1, EGF-like module {Mous 98.06
d1uzka243 Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} 98.04
d1g1sa240 E-selectin, EGF-domain {Human (Homo sapiens) [TaxI 98.02
d1dx5i340 Thrombomodulin, different EGF-like domains {Human 98.01
d1apqa_53 Complement protease C1R {Human (Homo sapiens) [Tax 97.97
d1gl4a240 EGF-like domain of nidogen-1 {Mouse (Mus musculus) 97.92
d1uzka143 Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} 97.92
d1q4ga242 Prostaglandin H2 synthase-1, EGF-like module {Shee 97.87
d1autl148 Activated protein c (autoprothrombin IIa) {Human ( 97.87
d1lmja242 Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} 97.82
d1i0ua241 Low density lipoprotein (LDL) receptor, different 97.79
d1tpga141 Plasminogen activator (tissue-type), t-PA {Human ( 97.78
d1haea_63 Heregulin-alpha, EGF-like domain {Human (Homo sapi 97.74
d1cvua241 Prostaglandin H2 synthase-1, EGF-like module {Mous 97.71
d1uzka243 Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} 97.66
d1apqa_53 Complement protease C1R {Human (Homo sapiens) [Tax 97.57
d1dx5i340 Thrombomodulin, different EGF-like domains {Human 97.48
d1i0ua241 Low density lipoprotein (LDL) receptor, different 97.44
d1szba245 Mannose-binding protein associated serine protease 97.4
d3egfa_53 Epidermal growth factor, EGF {Mouse (Mus musculus) 97.37
d1nqlb_48 Epidermal growth factor, EGF {Human (Homo sapiens) 97.33
d1nt0a345 Mannose-binding protein associated serine protease 97.28
d1szba245 Mannose-binding protein associated serine protease 97.27
d1nt0a345 Mannose-binding protein associated serine protease 97.24
d1haea_63 Heregulin-alpha, EGF-like domain {Human (Homo sapi 97.2
d1emoa239 Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} 97.13
d1nqlb_48 Epidermal growth factor, EGF {Human (Homo sapiens) 96.88
d3bpse140 Low density lipoprotein (LDL) receptor, different 96.87
d3egfa_53 Epidermal growth factor, EGF {Mouse (Mus musculus) 96.85
d1nzia242 Complement C1S component {Human (Homo sapiens) [Ta 96.85
d1emoa239 Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} 96.31
d1nzia242 Complement C1S component {Human (Homo sapiens) [Ta 96.26
d3bpse140 Low density lipoprotein (LDL) receptor, different 96.16
d1k36a_46 Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI 94.64
d2i9aa140 Plasminogen activator (urokinase-type) {Human (Hom 94.55
d1ioxa_50 Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606] 94.25
d1ioxa_50 Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606] 94.17
d1l3ya_41 Integrin beta EGF-like domains {Human (Homo sapien 93.91
d1k36a_46 Epiregulin, EGF-domain {Human (Homo sapiens) [TaxI 93.65
d1kigl_51 Factor X, N-terminal module {Cow (Bos taurus) [Tax 93.38
d1moxc_49 Transforming growth factor alpha {Human (Homo sapi 93.33
d1moxc_49 Transforming growth factor alpha {Human (Homo sapi 93.1
d1autl250 Activated protein c (autoprothrombin IIa) {Human ( 92.99
d1kigl_51 Factor X, N-terminal module {Cow (Bos taurus) [Tax 92.36
d2p3ua151 Factor X, N-terminal module {Human (Homo sapiens) 92.01
d1autl250 Activated protein c (autoprothrombin IIa) {Human ( 91.18
d1ijqa250 Low density lipoprotein (LDL) receptor, different 90.27
d1jv2b543 Integrin beta EGF-like domains {Human (Homo sapien 90.13
d2i9aa140 Plasminogen activator (urokinase-type) {Human (Hom 89.61
d1xdtr_41 Heparin-binding epidermal growth factor, HBEGF {Hu 89.25
d2p3ua151 Factor X, N-terminal module {Human (Homo sapiens) 89.14
d1jv2b431 Integrin beta EGF-like domains {Human (Homo sapien 86.77
d1ijqa250 Low density lipoprotein (LDL) receptor, different 83.64
d1xdtr_41 Heparin-binding epidermal growth factor, HBEGF {Hu 83.62
d1kloa155 Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 82.29
d1dx5i143 Thrombomodulin, different EGF-like domains {Human 80.66
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=6e-10  Score=74.49  Aligned_cols=38  Identities=29%  Similarity=0.561  Sum_probs=35.8

Q ss_pred             cccCCCCCCCCCCCCccccCCCCceeeCCCCCccCCCCCc
Q psy13159         36 EYVNPCVPSPCGPYSQCRDIGGSPSCSCLPNYIGAPPNCR   75 (660)
Q Consensus        36 ~~~d~C~~~~C~~~g~C~~~~g~y~C~C~~G~~g~~~~C~   75 (660)
                      +|+|+|+++||.++|+|++..++|+|+|++||+|+  +|+
T Consensus         1 id~d~C~~~PC~ngg~C~~~~~~y~C~C~~g~~G~--~Ce   38 (39)
T d1edmb_           1 VDGDQCESNPCLNGGSCKDDINSYECWCPFGFEGK--NCE   38 (39)
T ss_dssp             CCCCTTTTCCCCTTCEEEEETTEEEEECCTTCCST--TSC
T ss_pred             CccccCCCCCCCCCcEEEcCCCCEEEECCCCCCCC--CCC
Confidence            47899999999999999999999999999999999  775
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Back     information, alignment and structure
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like module {Sheep (Ovis aries) [TaxId: 9940]} Back     information, alignment and structure
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type), t-PA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like module {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1emoa2 g.3.11.1 (A:2167-2205) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jv2b5 g.3.11.6 (B:563-605) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor, HBEGF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1dx5i1 g.3.11.1 (I:345-387) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure