Psyllid ID: psy13230

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
Protein Sequence
MLQYTFLIISVSSLSFSRVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFYIFYIN
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHcccccHHHHHHHHccccHHHHHHHHHHHccEEccEEEEcc
Secondary Structure Prediction (SSPRO)
cEEEEEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHccEEEEEEEEEc
Coil and Loop (DISEMBL)
MLQYTFLIISVSslsfsrvpespyknemlGLNLLYLLSQNRVAEFHMELERIQYEDMIFLakdgvpsprynAFMETLIDTTRNEIASCIEKAYTVIsvgdtaqklhigsEKQMVEFGKKVKNIVYFYIFYIN
Flexible Loop (DISEMBL)
MLQYTFLIIsvsslsfsrvPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFYIFYIN
Low Complexity Region (SEG)
MLQYTfliisvsslsfsrvpespYKNEMlglnllyllSQNRVAEFHMELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFYIFYIN
Disordered region (IsUnstruct)
**QYTFLIISVSSLSFSRVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFYIFYI*
Disordered Region (DISOPRED)
*LQYTFLIISVSSLSFSRVPE*PYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFYIFYI*
Disordered Region (DISEMBL)
MLQYTFLIISVSSLSFSRVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFYIFYIN
Disordered Region (DISPRO)
MLQYTFLIISVSSLSFSRVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFYIFYIN
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLQYTFLIISVSSLSFSRVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFYIFYIN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	132	2.2.26 [Sep-21-2011]
Q9CX56	353	26S proteasome non-ATPase	yes	N/A	0.772	0.288	0.416	8e-15
Q3SYT7	287	26S proteasome non-ATPase	yes	N/A	0.772	0.355	0.416	8e-15
Q5RE15	289	26S proteasome non-ATPase	no	N/A	0.772	0.352	0.416	2e-14
P48556	350	26S proteasome non-ATPase	yes	N/A	0.772	0.291	0.416	2e-14
Q9FHY0	233	26S proteasome non-ATPase	yes	N/A	0.757	0.429	0.344	5e-13
Q23449	250	26S proteasome non-ATPase	yes	N/A	0.803	0.424	0.315	8e-13
Q9SGW3	267	26S proteasome non-ATPase	no	N/A	0.757	0.374	0.377	7e-10
P02889	263	Probable 26S proteasome n	yes	N/A	0.704	0.353	0.269	2e-09
P50524	270	26S proteasome regulatory	yes	N/A	0.734	0.359	0.349	5e-09

>sp|Q9CX56|PSMD8_MOUSE 26S proteasome non-ATPase regulatory subunit 8 OS=Mus musculus GN=Psmd8 PE=1 SV=2

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 23/125 (18%)

Query: 18  RVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM-------------------- 57
           ++PES Y +++LGLNLL+LLSQNRVAEFH ELER+  +D+                    
Sbjct: 184 QLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGS 243

Query: 58  ---IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMV 114
              +FLAK  +P+  Y  F++ L+DT R+EIA CIEKAY  I   +  + L   + K+M 
Sbjct: 244 YNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFAEATRILFFSTPKKMT 303

Query: 115 EFGKK 119
           ++ KK
Sbjct: 304 DYAKK 308

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. Necessary for activation of the CDC28 kinase.
Mus musculus (taxid: 10090)

>sp|Q3SYT7|PSMD8_BOVIN 26S proteasome non-ATPase regulatory subunit 8 OS=Bos taurus GN=PSMD8 PE=2 SV=3

 Score = 79.0 bits (193), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 23/125 (18%)

Query: 18  RVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM-------------------- 57
           ++PES Y +++LGLNLL+LLSQNRVAEFH ELER+  +D+                    
Sbjct: 118 QLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGS 177

Query: 58  ---IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMV 114
              +FLAK  +P+  Y  F++ L+DT R+EIA CIEKAY  I   +  + L   + K+M 
Sbjct: 178 YNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMT 237

Query: 115 EFGKK 119
           ++ KK
Sbjct: 238 DYAKK 242

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. Necessary for activation of the CDC28 kinase.

Bos taurus (taxid: 9913)

>sp|Q5RE15|PSMD8_PONAB 26S proteasome non-ATPase regulatory subunit 8 (Fragment) OS=Pongo abelii GN=PSMD8 PE=2 SV=2

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 23/125 (18%)

Query: 18  RVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM-------------------- 57
           ++PES Y +++LGLNLL+LLSQNRVAEFH ELER+  +D+                    
Sbjct: 120 QLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGS 179

Query: 58  ---IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMV 114
              +FLAK  +P+  Y  F++ L+DT R+EIA CIEKAY  I   +  + L   + K+M 
Sbjct: 180 YNKVFLAKGNIPAESYAFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMT 239

Query: 115 EFGKK 119
           ++ KK
Sbjct: 240 DYAKK 244

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. Necessary for activation of the CDC28 kinase.

Pongo abelii (taxid: 9601)

>sp|P48556|PSMD8_HUMAN 26S proteasome non-ATPase regulatory subunit 8 OS=Homo sapiens GN=PSMD8 PE=1 SV=2

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 74/125 (59%), Gaps = 23/125 (18%)

Query: 18  RVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM-------------------- 57
           ++PES Y +++LGLNLL+LLSQNRVAEFH ELER+  +D+                    
Sbjct: 181 QLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGS 240

Query: 58  ---IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMV 114
              +FLAK  +P+  Y  F++ L+DT R+EIA CIEKAY  I   +  + L   + K+M 
Sbjct: 241 YNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMT 300

Query: 115 EFGKK 119
           ++ KK
Sbjct: 301 DYAKK 305

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. Necessary for activation of the CDC28 kinase.

Homo sapiens (taxid: 9606)

>sp|Q9FHY0|RP12B_ARATH 26S proteasome non-ATPase regulatory subunit RPN12B OS=Arabidopsis thaliana GN=RPN12B PE=2 SV=2

 Score = 73.2 bits (178), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 42/122 (34%), Positives = 64/122 (52%), Gaps = 22/122 (18%)

Query: 17  SRVPESPYKNEMLGLNLLYLLSQNRVAEFHMEL--------------ERIQYE------- 55
           +R+P SP +N ++GLNLL LL QNR+AEFH EL                ++ E       
Sbjct: 63  NRIPPSPQENLIMGLNLLRLLVQNRIAEFHTELGLLSSATLENPCIKHAVELEQSFMEGA 122

Query: 56  -DMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMV 114
            + +  A+   P   Y  FM+ L  T R+EIA C EKAY  +S+ +  + L   S++Q++
Sbjct: 123 YNRVLSARQTAPDETYVYFMDLLAKTIRDEIAGCSEKAYDHLSISEGCKMLLFSSDQQLL 182

Query: 115 EF 116
            +
Sbjct: 183 TY 184

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q23449|PSMD8_CAEEL 26S proteasome non-ATPase regulatory subunit 8 OS=Caenorhabditis elegans GN=rpn-12 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/130 (31%), Positives = 71/130 (54%), Gaps = 24/130 (18%)

Query: 16  FSRVPE-SPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM----------------- 57
           ++  PE S  K+ M GL+L++LL+ NR+++FHM LE+I  ++                  
Sbjct: 79  YTMAPENSENKHLMTGLHLMFLLAANRLSDFHMLLEQIPQKEQTSNAYISTPVRIEQSLM 138

Query: 58  ------IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEK 111
                 + L +  +PSP Y  F+  ++DT R EIA+ IEK++ V++  D    L   +++
Sbjct: 139 EGAYNKVVLTEKNIPSPFYTIFIRIMLDTIRREIATSIEKSFKVLTAKDATVMLLFDNDE 198

Query: 112 QMVEFGKKVK 121
           QM +FG++ K
Sbjct: 199 QMKKFGQERK 208

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9SGW3|RP12A_ARATH 26S proteasome non-ATPase regulatory subunit RPN12A OS=Arabidopsis thaliana GN=RPN12A PE=1 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 65/122 (53%), Gaps = 22/122 (18%)

Query: 17  SRVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQ---YED----------------- 56
           +R+P+SP +N +LGLNLL LL QNR+AEFH ELE +     ED                 
Sbjct: 97  NRIPQSPQENLILGLNLLRLLVQNRIAEFHTELELLSSATLEDPCIKHAVELEQSFMEGA 156

Query: 57  --MIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMV 114
              +  A+   P   Y  FM+ L  T R+EIA C EKAY  +S+ D  Q L   S+++++
Sbjct: 157 YNRVLSARQTAPDATYVYFMDLLAKTIRDEIAGCSEKAYDYVSISDARQMLLFSSDQELL 216

Query: 115 EF 116
            +
Sbjct: 217 TY 218

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins. May help to control the degradation of one or more factors that repress cytokinin signaling.

Arabidopsis thaliana (taxid: 3702)

>sp|P02889|PSMD8_DICDI Probable 26S proteasome non-ATPase regulatory subunit 8 OS=Dictyostelium discoideum GN=psmD8-1 PE=3 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/115 (26%), Positives = 61/115 (53%), Gaps = 22/115 (19%)

Query: 27  EMLGLNLLYLLSQNRVAEFHMELERIQYEDM----------------------IFLAKDG 64
           +++GLNL+ LL++++ +EFH E+E I++ ++                      I  ++ G
Sbjct: 107 QIIGLNLMRLLAKHKTSEFHSEIELIEFNNLDNSFIKFPLLVEKSITEGSYNKIIQSRSG 166

Query: 65  VPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKK 119
           VPS  Y  F++ L D+ + +IA+C EK++  +S+ D  + L      Q  ++ K+
Sbjct: 167 VPSEYYQVFLDILADSIKEDIANCSEKSFKTLSLKDAEKVLLFNDNNQFQQYIKE 221

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|P50524|RPN12_SCHPO 26S proteasome regulatory subunit rpn12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpn12 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 65/126 (51%), Gaps = 29/126 (23%)

Query: 30  GLNLLYLLSQNRVAEFHMELERIQ----------YEDMIFL-------AKDGVPS----- 67
           GLNLLYLLS+NR+AEFH  LE +            E +I L       A D V S     
Sbjct: 96  GLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSC 155

Query: 68  --PRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHI----GSEKQMVEFGKKVK 121
             P ++ FM+ ++   RNEIA+C EK Y+ I + +    L++     +EK   E G  ++
Sbjct: 156 NFPEFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEERGWDIR 215

Query: 122 N-IVYF 126
           + ++YF
Sbjct: 216 DGVIYF 221

Acts as a regulatory subunit of the 26S proteasome which is involved in the ATP-dependent degradation of ubiquitinated proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
357627342	268	putative 26S proteasome non-ATPase regul	0.780	0.384	0.444	2e-16
389609467	268	26S proteasome non-ATPase regulatory sub	0.765	0.376	0.443	2e-15
449669140	237	PREDICTED: 26S proteasome non-ATPase reg	0.780	0.434	0.349	3e-15
324515992	261	26S proteasome non-ATPase regulatory sub	0.856	0.432	0.35	5e-15
91080521	265	PREDICTED: similar to 26S proteasome non	0.795	0.396	0.453	5e-15
50344918	267	26S proteasome non-ATPase regulatory sub	0.765	0.378	0.427	1e-14
345494174	270	PREDICTED: 26S proteasome non-ATPase reg	0.780	0.381	0.428	2e-14
422081994	267	PSMD8 [Danio rerio]	0.765	0.378	0.427	2e-14
74223129	253	unnamed protein product [Mus musculus]	0.803	0.418	0.410	5e-14
116063390	257	LOC414691 protein [Xenopus laevis]	0.765	0.392	0.427	5e-14

>gi|357627342|gb|EHJ77072.1| putative 26S proteasome non-ATPase regulatory subunit 8 [Danaus plexippus]

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 56/126 (44%), Positives = 80/126 (63%), Gaps = 23/126 (18%)

Query: 17  SRVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYE--------------------- 55
             +PES +  ++LGLNLL+LL+QNRVAEFH ELER+  +                     
Sbjct: 96  DHLPESAFTYQLLGLNLLFLLAQNRVAEFHTELERLPVDVIRADPYVKHPLALEQYLMEG 155

Query: 56  --DMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQM 113
             + IFLAKD VP+  Y  FM+TL+DT R EIA+CIEKAY  IS  + A++L++ +++ +
Sbjct: 156 SYNKIFLAKDNVPAESYTLFMDTLLDTVRGEIAACIEKAYLCISSTEAARRLNLPNQQAV 215

Query: 114 VEFGKK 119
           +E+GKK
Sbjct: 216 LEYGKK 221

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389609467|dbj|BAM18345.1| 26S proteasome non-ATPase regulatory subunit rpn12 [Papilio xuthus]

 Score = 87.0 bits (214), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 55/124 (44%), Positives = 78/124 (62%), Gaps = 23/124 (18%)

Query: 19  VPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYE----------------------- 55
           +PES +  ++LGLNLL+LL+QNRVAEFH ELER+  +                       
Sbjct: 98  LPESAFMYQLLGLNLLFLLAQNRVAEFHTELERLPVDVIRADPYVRHPLALEQYLMEGSY 157

Query: 56  DMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVE 115
           + IFLAK  VP+  Y  FM+TL++T R EIA+CIEKAY  I  G+ A++L++ S+  ++E
Sbjct: 158 NKIFLAKGNVPAESYTLFMDTLLETVRGEIAACIEKAYLSIPCGEAARRLNLPSQMAVLE 217

Query: 116 FGKK 119
           +GKK
Sbjct: 218 YGKK 221

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449669140|ref|XP_002169815.2| PREDICTED: 26S proteasome non-ATPase regulatory subunit 8-like [Hydra magnipapillata]

 Score = 86.7 bits (213), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 70/126 (55%), Gaps = 23/126 (18%)

Query: 19  VPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM--------------------- 57
           VP+SPY  ++LGLNL+  L+QNR+AEFH ELE +  +++                     
Sbjct: 97  VPQSPYMYQLLGLNLMRFLAQNRLAEFHTELELLPAKELYDNVYLKCPVQLEQYLMEGNY 156

Query: 58  --IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVE 115
             +FL+K  VP+  Y+ F+  L+DT R+E+A+CIEK+Y+ IS  +  + L    E  +  
Sbjct: 157 NKVFLSKGNVPAESYHFFINILLDTLRDEVAACIEKSYSHISTKEACRMLFFDKEVDLTN 216

Query: 116 FGKKVK 121
           +   V+
Sbjct: 217 YAATVR 222

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|324515992|gb|ADY46383.1| 26S proteasome non-ATPase regulatory subunit 8 [Ascaris suum]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 76/140 (54%), Gaps = 27/140 (19%)

Query: 15  SFSRVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYE------------------- 55
           S+S   ESP K  M+GL+L+YLL+ N +AEFHM LE+++                     
Sbjct: 88  SYSSGGESPNKYLMIGLDLMYLLATNHLAEFHMLLEQVEQSVQQSNPYISTPVKLEQSLI 147

Query: 56  ----DMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEK 111
               + + L +  +PSP Y  F+  L+DT R EIA+CIE+A+  +S+ D  Q L   +E 
Sbjct: 148 EGVYNKVVLTEGTIPSPYYAVFIRILMDTVRGEIATCIERAFKRVSLKDATQLLLFNNES 207

Query: 112 QMVEF----GKKVKNIVYFY 127
           ++V F    G K++N V+ +
Sbjct: 208 EVVPFTSKRGWKIENNVFLF 227

Source: Ascaris suum

Species: Ascaris suum

Genus: Ascaris

Family: Ascarididae

Order: Ascaridida

Class: Chromadorea

Phylum: Nematoda

Superkingdom: Eukaryota

>gi|91080521|ref|XP_971959.1| PREDICTED: similar to 26S proteasome non-ATPase regulatory subunit 8 [Tribolium castaneum] gi|270005781|gb|EFA02229.1| hypothetical protein TcasGA2_TC007891 [Tribolium castaneum]

 Score = 85.9 bits (211), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 58/128 (45%), Positives = 76/128 (59%), Gaps = 23/128 (17%)

Query: 17  SRVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYE--------------------- 55
            ++PES +K ++LGLNLL+LLSQNRVAEFH ELE +  E                     
Sbjct: 96  DQLPESSFKYQLLGLNLLFLLSQNRVAEFHTELELLPAEHIQNDVYIRHPLSIEQYLMEG 155

Query: 56  --DMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQM 113
             + IFLAK  VP+  YN FM+ L+DT R EIA C+EKAY  IS+ D A+ L++ +E+  
Sbjct: 156 SYNKIFLAKGNVPAKNYNFFMDILLDTIRGEIAVCVEKAYEKISLKDAARMLYLANEEAA 215

Query: 114 VEFGKKVK 121
             FGK  K
Sbjct: 216 KTFGKNKK 223

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|50344918|ref|NP_001002131.1| 26S proteasome non-ATPase regulatory subunit 8 [Danio rerio] gi|47937964|gb|AAH71432.1| Zgc:86762 [Danio rerio]

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 75/124 (60%), Gaps = 23/124 (18%)

Query: 19  VPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM--------------------- 57
           +PES Y++++LGLNLL+LLSQNRV+EFH ELER+  +D+                     
Sbjct: 99  LPESAYRHQLLGLNLLFLLSQNRVSEFHTELERLSAKDIQTNVYIRHPVSLEQYLMEGSY 158

Query: 58  --IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVE 115
             +FLAK  +P+  Y  F++TL+DT R+EIA CIEKAY  I   +  + L   S K+M +
Sbjct: 159 NKVFLAKGNIPAESYTFFIDTLLDTIRDEIAGCIEKAYEQIQFNEATRVLFFSSPKKMTD 218

Query: 116 FGKK 119
           + KK
Sbjct: 219 YAKK 222

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|345494174|ref|XP_001606389.2| PREDICTED: 26S proteasome non-ATPase regulatory subunit 8-like [Nasonia vitripennis]

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/126 (42%), Positives = 77/126 (61%), Gaps = 23/126 (18%)

Query: 17  SRVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM------------------- 57
           + +PES +K ++LGLNLL+LLSQNRVAEFH ELE +  + +                   
Sbjct: 100 TSLPESAFKYQLLGLNLLFLLSQNRVAEFHTELELLPSDQIQSNIYIRHPLSLEQCLMEG 159

Query: 58  ----IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQM 113
               IFLAK  VP+  YN F++ L++T RNEI +C+E AY  IS+ D  + L++ SEK++
Sbjct: 160 SYNKIFLAKGNVPAASYNFFIDILLNTVRNEIGACMESAYDKISLKDACRMLNLSSEKEV 219

Query: 114 VEFGKK 119
           + F KK
Sbjct: 220 LNFAKK 225

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|422081994|gb|AFX74876.1| PSMD8 [Danio rerio]

 Score = 83.6 bits (205), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 74/124 (59%), Gaps = 23/124 (18%)

Query: 19  VPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM--------------------- 57
           +PES Y++++LGLNLL+LLSQNRV+EFH ELER+  +D+                     
Sbjct: 99  LPESAYRHQLLGLNLLFLLSQNRVSEFHTELERLSAKDIQTNVYIRHPVSLEQYLMEGSY 158

Query: 58  --IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVE 115
             +FLAK  +P+  Y  F++TL+DT R+EIA CIEKAY  I      + L   S K+M +
Sbjct: 159 NKVFLAKGNIPAESYTFFIDTLLDTIRDEIAGCIEKAYEQIQFNGATRVLFFSSPKKMTD 218

Query: 116 FGKK 119
           + KK
Sbjct: 219 YAKK 222

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|74223129|dbj|BAE40703.1| unnamed protein product [Mus musculus]

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 76/129 (58%), Gaps = 23/129 (17%)

Query: 18  RVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM-------------------- 57
           ++PES Y +++LGLNLL+LLSQNRVAEFH ELER+  +D+                    
Sbjct: 120 QLPESAYMHQLLGLNLLFLLSQNRVAEFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGS 179

Query: 58  ---IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMV 114
              +FLAK  +P+  Y  F++ L+DT R+EIA CIEKAY  I   +  + L   + K+M 
Sbjct: 180 YNKVFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFAEATRILFFSTPKKMT 239

Query: 115 EFGKKVKNI 123
           ++ KKV  +
Sbjct: 240 DYAKKVAGV 248

Source: Mus musculus

Species: Mus musculus

Genus: Mus

Family: Muridae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|116063390|gb|AAI23113.1| LOC414691 protein [Xenopus laevis]

 Score = 82.4 bits (202), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 53/124 (42%), Positives = 74/124 (59%), Gaps = 23/124 (18%)

Query: 19  VPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM--------------------- 57
           +PES YK+++LGLNLL+LLSQNRVA+FH ELER+  +D+                     
Sbjct: 89  LPESAYKHQLLGLNLLFLLSQNRVADFHTELERLPAKDIQTNVYIKHPVSLEQYLMEGSY 148

Query: 58  --IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVE 115
             +FLAK  +P+  Y  F++ L+DT R+EIA CIEKAY  I   +  + L   + K+M E
Sbjct: 149 NKVFLAKGNIPAESYTFFIDILLDTIRDEIADCIEKAYGKIQFNEATRILFFNTPKKMTE 208

Query: 116 FGKK 119
           + KK
Sbjct: 209 YAKK 212

Source: Xenopus laevis

Species: Xenopus laevis

Genus: Xenopus

Family: Pipidae

Order: Anura

Class: Amphibia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	132
ZFIN|ZDB-GENE-040625-136	267	psmd8 "proteasome (prosome, ma	0.469	0.232	0.451	7.8e-17
UNIPROTKB|K7EJC1	172	PSMD8 "26S proteasome non-ATPa	0.5	0.383	0.409	2e-16
UNIPROTKB|K7EJR3	258	PSMD8 "26S proteasome non-ATPa	0.5	0.255	0.409	7.2e-16
RGD|1309842	285	Psmd8 "proteasome (prosome, ma	0.469	0.217	0.419	4.2e-15
UNIPROTKB|Q3SYT7	287	PSMD8 "26S proteasome non-ATPa	0.545	0.250	0.4	4.3e-15
UNIPROTKB|F1MYH8	287	PSMD8 "26S proteasome non-ATPa	0.469	0.216	0.419	7.4e-15
MGI|MGI:1888669	353	Psmd8 "proteasome (prosome, ma	0.469	0.175	0.419	1.2e-14
UNIPROTKB|F1LMQ3	353	Psmd8 "Protein Psmd8" [Rattus	0.469	0.175	0.419	1.2e-14
UNIPROTKB|Q5RE15	289	PSMD8 "26S proteasome non-ATPa	0.469	0.214	0.419	1.3e-14
UNIPROTKB|P48556	350	PSMD8 "26S proteasome non-ATPa	0.469	0.177	0.419	1.9e-14

ZFIN|ZDB-GENE-040625-136 psmd8 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 8" [Danio rerio (taxid:7955)]

 Score = 151 (58.2 bits), Expect = 7.8e-17, Sum P(2) = 7.8e-17
 Identities = 28/62 (45%), Positives = 40/62 (64%)

Query:    58 IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG 117
             +FLAK  +P+  Y  F++TL+DT R+EIA CIEKAY  I   +  + L   S K+M ++ 
Sbjct:   161 VFLAKGNIPAESYTFFIDTLLDTIRDEIAGCIEKAYEQIQFNEATRVLFFSSPKKMTDYA 220

Query:   118 KK 119
             KK
Sbjct:   221 KK 222

GO:0005838 "proteasome regulatory particle" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|K7EJC1 PSMD8 "26S proteasome non-ATPase regulatory subunit 8" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
 Identities = 27/66 (40%), Positives = 41/66 (62%)

Query:    58 IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG 117
             +FLAK  +P+  Y  F++ L+DT R+EIA CIEKAY  I   +  + L   + K+M ++ 
Sbjct:    77 VFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYA 136

Query:   118 KKVKNI 123
             KKV  +
Sbjct:   137 KKVAGV 142

GO:0005838 "proteasome regulatory particle" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|K7EJR3 PSMD8 "26S proteasome non-ATPase regulatory subunit 8" [Homo sapiens (taxid:9606)]

 Score = 143 (55.4 bits), Expect = 7.2e-16, Sum P(2) = 7.2e-16
 Identities = 27/66 (40%), Positives = 41/66 (62%)

Query:    58 IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG 117
             +FLAK  +P+  Y  F++ L+DT R+EIA CIEKAY  I   +  + L   + K+M ++ 
Sbjct:   188 VFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYA 247

Query:   118 KKVKNI 123
             KKV  +
Sbjct:   248 KKVAGV 253

GO:0005838 "proteasome regulatory particle" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

RGD|1309842 Psmd8 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 8" [Rattus norvegicus (taxid:10116)]

 Score = 139 (54.0 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query:    58 IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG 117
             +FLAK  +P+  Y  F++ L+DT R+EIA CIEKAY  I   +  + L   + K+M ++ 
Sbjct:   179 VFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFAEATRILFFSTPKKMTDYA 238

Query:   118 KK 119
             KK
Sbjct:   239 KK 240

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0022624 "proteasome accessory complex" evidence=ISO

GO:0005730 "nucleolus" evidence=ISO

UNIPROTKB|Q3SYT7 PSMD8 "26S proteasome non-ATPase regulatory subunit 8" [Bos taurus (taxid:9913)]

 Score = 139 (54.0 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
 Identities = 30/75 (40%), Positives = 44/75 (58%)

Query:    58 IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG 117
             +FLAK  +P+  Y  F++ L+DT R+EIA CIEKAY  I   +  + L   + K+M ++ 
Sbjct:   181 VFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYA 240

Query:   118 KK---VKNIVYFYIF 129
             KK   V  I  +Y F
Sbjct:   241 KKRGWVLGINNYYSF 255

GO:0022624 "proteasome accessory complex" evidence=ISS

GO:0006508 "proteolysis" evidence=IEA

GO:0005838 "proteasome regulatory particle" evidence=IEA

UNIPROTKB|F1MYH8 PSMD8 "26S proteasome non-ATPase regulatory subunit 8" [Bos taurus (taxid:9913)]

 Score = 137 (53.3 bits), Expect = 7.4e-15, Sum P(2) = 7.4e-15
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query:    58 IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG 117
             +FLAK  +P+  Y  F++ L+DT R+EIA CIEKAY  I   +  + L   + K+M ++ 
Sbjct:   181 VFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYA 240

Query:   118 KK 119
             KK
Sbjct:   241 KK 242

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005838 "proteasome regulatory particle" evidence=IEA

MGI|MGI:1888669 Psmd8 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 8" [Mus musculus (taxid:10090)]

 Score = 139 (54.0 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query:    58 IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG 117
             +FLAK  +P+  Y  F++ L+DT R+EIA CIEKAY  I   +  + L   + K+M ++ 
Sbjct:   247 VFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFAEATRILFFSTPKKMTDYA 306

Query:   118 KK 119
             KK
Sbjct:   307 KK 308

GO:0000502 "proteasome complex" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005838 "proteasome regulatory particle" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=IDA

UNIPROTKB|F1LMQ3 Psmd8 "Protein Psmd8" [Rattus norvegicus (taxid:10116)]

 Score = 139 (54.0 bits), Expect = 1.2e-14, Sum P(2) = 1.2e-14
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query:    58 IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG 117
             +FLAK  +P+  Y  F++ L+DT R+EIA CIEKAY  I   +  + L   + K+M ++ 
Sbjct:   247 VFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFAEATRILFFSTPKKMTDYA 306

Query:   118 KK 119
             KK
Sbjct:   307 KK 308

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005838 "proteasome regulatory particle" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

UNIPROTKB|Q5RE15 PSMD8 "26S proteasome non-ATPase regulatory subunit 8" [Pongo abelii (taxid:9601)]

 Score = 135 (52.6 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query:    58 IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG 117
             +FLAK  +P+  Y  F++ L+DT R+EIA CIEKAY  I   +  + L   + K+M ++ 
Sbjct:   183 VFLAKGNIPAESYAFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYA 242

Query:   118 KK 119
             KK
Sbjct:   243 KK 244

GO:0022624 "proteasome accessory complex" evidence=ISS

UNIPROTKB|P48556 PSMD8 "26S proteasome non-ATPase regulatory subunit 8" [Homo sapiens (taxid:9606)]

 Score = 137 (53.3 bits), Expect = 1.9e-14, Sum P(2) = 1.9e-14
 Identities = 26/62 (41%), Positives = 39/62 (62%)

Query:    58 IFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG 117
             +FLAK  +P+  Y  F++ L+DT R+EIA CIEKAY  I   +  + L   + K+M ++ 
Sbjct:   244 VFLAKGNIPAESYTFFIDILLDTIRDEIAGCIEKAYEKILFTEATRILFFNTPKKMTDYA 303

Query:   118 KK 119
             KK
Sbjct:   304 KK 305

GO:0005838 "proteasome regulatory particle" evidence=IEA

GO:0022624 "proteasome accessory complex" evidence=ISS

GO:0000502 "proteasome complex" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	132
pfam10075	144	pfam10075, PCI_Csn8, COP9 signalosome, subunit CSN	2e-19
pfam03399	155	pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p2	7e-12

>gnl|CDD|220553 pfam10075, PCI_Csn8, COP9 signalosome, subunit CSN8

 Score = 78.1 bits (193), Expect = 2e-19
 Identities = 38/123 (30%), Positives = 58/123 (47%), Gaps = 24/123 (19%)

Query: 23  PYKNEMLGLNLLYLLSQNRVAEFHMELERI------------------------QYEDMI 58
             K E+ GL LL LL+QN +A+F + L+RI                         Y    
Sbjct: 1   ELKTELYGLILLKLLTQNDIADFRLLLKRIPQAIKESNPEIQQLLTLGQLLWENDYAKFW 60

Query: 59  FLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGK 118
              +    S  Y  F+  L DT R+EIA+ + KAY+ IS+ D A+ L + S++++ +F K
Sbjct: 61  QTLRSNDWSEDYTPFIAGLEDTIRDEIAALVGKAYSSISIDDLAELLGLSSDEELEKFAK 120

Query: 119 KVK 121
           K  
Sbjct: 121 KRG 123

This PCI_Csn8 domain is conserved from plants to humans. It is a signature protein motif found in components of CSN (COP9 signalosome). It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development. Length = 144

>gnl|CDD|217534 pfam03399, SAC3_GANP, SAC3/GANP/Nin1/mts3/eIF-3 p25 family

 Score = 58.4 bits (142), Expect = 7e-12
 Identities = 29/112 (25%), Positives = 44/112 (39%), Gaps = 21/112 (18%)

Query: 16  FSRVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM--------IFLAK----- 62
              + +SP + E +   LLYLLS N +++FH ELE +  E          + L +     
Sbjct: 44  DDLLGKSPNEAEFIAYYLLYLLSNNPISDFHTELELLPDEIRNDPYIQFALELEQALMEG 103

Query: 63  ------DGVPSPRY--NAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLH 106
                   +    Y     +E  +D  R E    I KAY  I +   A+ L 
Sbjct: 104 NYHRFFRLLKKAPYLYACLLERFLDRIRKEALKAISKAYRSIPLSYLAELLG 155

This large family includes diverse proteins involved in large complexes. The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3, and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits. Length = 155

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	132
KOG3151|consensus	260		100.0
PF10075	143	PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro	99.9
PF03399	204	SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; I	99.25
KOG4414|consensus	197		98.05
PF01399	105	PCI: PCI domain; InterPro: IPR000717 A homology do	97.13
KOG1861|consensus	540		93.12
smart00753	88	PAM PCI/PINT associated module.	92.73
smart00088	88	PINT motif in proteasome subunits, Int-6, Nip-1 an	92.73
KOG3252|consensus	217		90.9
KOG2581|consensus	493		90.04
PF04800	101	ETC_C1_NDUFA4: ETC complex I subunit conserved reg	84.33
KOG3442|consensus	132		82.25

>KOG3151|consensus

Probab=100.00  E-value=2.2e-41  Score=273.42  Aligned_cols=118  Identities=41%  Similarity=0.658  Sum_probs=110.3

Q ss_pred             cccCCC-CCCCcCcchhhHHHHHHHhccCChhHHHHHHhhhchhhh-----------------------HHhccCCCCCc
Q psy13230         13 SLSFSR-VPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM-----------------------IFLAKDGVPSP   68 (132)
Q Consensus        13 ~~~~~~-lp~S~~~~~ilgL~LL~LLsqnriaeFHteLE~l~~~~~-----------------------V~~~~~~vP~~   68 (132)
                      ||.|.. +|+|++|++++|||||+|||||||||||||||+||.+.+                       |+++++++|+|
T Consensus        86 Y~d~~~~l~~S~~~~~l~GLnLL~LLsqNRiaeFHteLe~lp~~~l~~~~~I~~~v~LEq~~MEGaYnKv~~a~~s~p~~  165 (260)
T KOG3151|consen   86 YFDYNEKLSESEKKHKLLGLNLLYLLSQNRIAEFHTELELLPKKILQHNPYISHPVSLEQSLMEGAYNKVLSAKQSIPSE  165 (260)
T ss_pred             hcccccccCcchhhhHHHHHHHHHHHHhccHHHHHHHHHhccHHHhhccchhhhHHHHHHHHHhhHHHHHHHHHhcCCcH
Confidence            455544 999999999999999999999999999999999998766                       88999999999


Q ss_pred             cHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhhcCCeeeceeee
Q psy13230         69 RYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFYIFY  130 (132)
Q Consensus        69 ~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~ergW~vd~~~~~  130 (132)
                      +|.+||++|++|||+|||.|+||||+.||+++|++||+|++++++.+|+.+|+|.++..-.|
T Consensus       166 ~y~~FmdIl~~tiRdEIA~c~EKsYd~l~~s~a~~~L~f~~~~e~~~~~~~r~W~l~~~~~~  227 (260)
T KOG3151|consen  166 EYTYFMDILLDTIRDEIAGCIEKSYDKLSASDATQMLLFNNDKELKKFATERQWPLDEKGVF  227 (260)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHhcCChHHHHHHHHhcCCcccccccc
Confidence            99999999999999999999999999999999999999999999999999999999954433

>PF10075 PCI_Csn8: COP9 signalosome, subunit CSN8; InterPro: IPR019280 The photomorphogenic 9 (COP9) signalosome or CSN complex is composed of eight subunits: Cops1/GPS1, Cops2, Cops3, Cops4, Cops5, Cop6, Cops7 (Cops7A or Cops7B) and Cops8

Probab=99.90  E-value=6.1e-24  Score=157.44  Aligned_cols=107  Identities=31%  Similarity=0.361  Sum_probs=84.3

Q ss_pred             CcchhhHHHHHHHhccCChhHHHHHHhhhchhhh-----------------------HHh-ccCCCCCccHHHHHHHHHH
Q psy13230         24 YKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM-----------------------IFL-AKDGVPSPRYNAFMETLID   79 (132)
Q Consensus        24 ~~~~ilgL~LL~LLsqnriaeFHteLE~l~~~~~-----------------------V~~-~~~~vP~~~y~~Fm~~L~~   79 (132)
                      .+..+.|++|+.+|.+|++++||..++++|.+..                       +|. .+++.|++.|..||..+.+
T Consensus         2 ~~~~~~~~~Ll~~L~~~~~~df~~~~~rip~~~~~~~~~i~~i~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~   81 (143)
T PF10075_consen    2 LNPEIYALILLKYLMQNDLSDFRLLWKRIPEELKQSDPEIKAIWSLGQALWEGDYSKFWQALRSNPWSPDYKPFVPGFED   81 (143)
T ss_dssp             --HHHHHHHHHHHHHTTTSTHHHHHHHTS-HHHHTS-TTHHHHHHHHHHHHTT-HHHHHHHS-TT----HHHHTSTTHHH
T ss_pred             CchhHHHHHHHHHHHcCCchHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHhccchHHHHHHHHHHHH
Confidence            4567999999999999999999999999998754                       555 5777899999999999999


Q ss_pred             HHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhhcCCeeeceeeee
Q psy13230         80 TTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFYIFYI  131 (132)
Q Consensus        80 TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~ergW~vd~~~~~~  131 (132)
                      +||++|+.|+++||++|++++++++|+++ ++|+.++++++||++|++...+
T Consensus        82 ~iR~~i~~~i~~aY~sIs~~~la~~Lg~~-~~el~~~~~~~gW~~d~~~~~~  132 (143)
T PF10075_consen   82 TIRERIAHLISKAYSSISLSDLAEMLGLS-EEELEKFIKSRGWTVDGDGVLF  132 (143)
T ss_dssp             HHHHHHHHHHHHH-SEE-HHHHHHHTTS--HHHHHHHHHHHT-EE-----EE
T ss_pred             HHHHHHHHHHHHHHhHcCHHHHHHHhCCC-HHHHHHHHHHcCCEECCCccEE
Confidence            99999999999999999999999999999 9999999999999999887644

In the complex, Cops8, which is the smallest subunit, probably interacts directly with Cops3, Cops4 and Cops7 (Cops7A or Cops7B). This signalosome is homologous to the lid subcomplex of the 26S proteasome and regulates the ubiquitin-proteasome pathway. It functions as a structural scaffold for subunit-subunit interactions within the complex and is a key regulator of photomorphogenic development [].; PDB: 1RZ4_A.

>PF03399 SAC3_GANP: SAC3/GANP/Nin1/mts3/eIF-3 p25 family; InterPro: IPR005062 This large family includes diverse proteins involved in large complexes [, , ]

Probab=99.25  E-value=1.1e-11  Score=94.78  Aligned_cols=89  Identities=33%  Similarity=0.504  Sum_probs=68.7

Q ss_pred             CCCCcCcchhhHHHHHHHhccCChhHHHHHHhhhchhhh----------------------HHh-ccCCCCCccHHHHHH
Q psy13230         19 VPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM----------------------IFL-AKDGVPSPRYNAFME   75 (132)
Q Consensus        19 lp~S~~~~~ilgL~LL~LLsqnriaeFHteLE~l~~~~~----------------------V~~-~~~~vP~~~y~~Fm~   75 (132)
                      .++++++..++|++||++|++|+.++||+.++.+|.+..                      +|. .+++-+++.+..+|+
T Consensus        92 ~~~~~~~~ef~~y~lL~~l~~~~~~~~~~~l~~l~~~~~~~~~i~~al~l~~a~~~gny~~ff~l~~~~~~~~l~~~l~~  171 (204)
T PF03399_consen   92 LPPSPNEAEFIAYYLLYLLCQNNIPDFHMELELLPSEILSSPYIQFALELCRALMEGNYVRFFRLYRSKSAPYLFACLME  171 (204)
T ss_dssp             T---TTHHHHHHHHHHHTT-T---THHHHHHTTS-HHHHTSHHHHHHHHHHHHH--TTHHHHHHHHT-TTS-HHHHHHHG
T ss_pred             CCCCCCHHHHHHHHHHHHHHcccchHHHHHHHHCchhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhccCCChHHHHHHH
Confidence            578999999999999999999999999999999986544                      233 223455688999999


Q ss_pred             HHHHHHHHHHHHhHHHhcCc-ccHHHHHhhhCC
Q psy13230         76 TLIDTTRNEIASCIEKAYTV-ISVGDTAQKLHI  107 (132)
Q Consensus        76 ~L~~TIR~eIA~ciEkAY~s-Lsl~~a~~LL~~  107 (132)
                      ..+++||..++.|+++||.+ +|++.++++|+|
T Consensus       172 ~~~~~iR~~al~~i~~ay~~~i~l~~l~~~L~F  204 (204)
T PF03399_consen  172 RFFNRIRLRALQSISKAYRSSIPLSFLAELLGF  204 (204)
T ss_dssp             GGHHHHHHHHHHHHHHHS-T-EEHHHHHHHTT-
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHcCC
Confidence            99999999999999999999 999999999986

The alignment contains one highly conserved negatively charged residue and one highly conserved positively charged residue that are probably important for the function of these proteins. The family includes the yeast nuclear export factor Sac3 [], and mammalian GANP/MCM3-associated proteins, which facilitate the nuclear localisation of MCM3, a protein that associates with chromatin in the G1 phase of the cell-cycle. The 26S protease (or 26S proteasome) is responsible for degrading ubiquitin conjugates. It consists of 19S regulatory complexes associated with the ends of 20S proteasomes. The 19S regulatory complex is composed of about 20 different polypeptides and confers ATP-dependence and substrate specificity to the 26S enzyme. The conserved region occurs at the C-terminal of the Nin1-like regulatory subunit [, , ]. This family includes several eukaryotic translation initiation factor 3 subunit 11 (eIF-3 p25) proteins. Eukaryotic initiation factor 3 (eIF3) is a multisubunit complex that is required for binding of mRNA to 40 S ribosomal subunits, stabilisation of ternary complex binding to 40 S subunits, and dissociation of 40 and 60 S subunits [].; PDB: 3T5V_D.

>KOG4414|consensus

Probab=98.05  E-value=6.8e-06  Score=63.99  Aligned_cols=63  Identities=19%  Similarity=0.029  Sum_probs=59.4

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhhcCCeeecee
Q psy13230         65 VPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFYI  128 (132)
Q Consensus        65 vP~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~ergW~vd~~~  128 (132)
                      -=|++.+..|..+.+..|.+....+-+||++|..+|.+..|++. +++..+.+.|.||++|+.+
T Consensus       102 dWSeeak~imaAf~D~~~kR~FaLl~qAYssI~~~D~A~FlGl~-~ddAtk~ilEnGWqaDaas  164 (197)
T KOG4414|consen  102 DWSEEAKDIMAAFRDATRKRAFALLLQAYSSIIADDFAAFLGLP-EDDATKGILENGWQADAAS  164 (197)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-HHHHHHHHHHcccchhhHH
Confidence            34789999999999999999999999999999999999999999 9999999999999999764

>PF01399 PCI: PCI domain; InterPro: IPR000717 A homology domain of unclear function, occurs in the C-terminal region of several regulatory components of the 26S proteasome as well as in other proteins

Probab=97.13  E-value=0.0056  Score=41.33  Aligned_cols=79  Identities=23%  Similarity=0.370  Sum_probs=63.1

Q ss_pred             HHHHHhccCChhHHHHHHhhhchhhhHHhccCCCCCccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHH
Q psy13230         32 NLLYLLSQNRVAEFHMELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEK  111 (132)
Q Consensus        32 ~LL~LLsqnriaeFHteLE~l~~~~~V~~~~~~vP~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~  111 (132)
                      .|+..+.+|++.+|+..++.....  .+      ..+.....++.+...+|.....-+-+.|+++++++.+++++++ .+
T Consensus         5 ~l~~~~~~~~~~~~~~~l~~~~~~--~~------~~~~l~~~~~~l~~~i~~~~l~~l~~~y~~i~~~~ia~~l~~~-~~   75 (105)
T PF01399_consen    5 ELLRAFRSGDLQEFEEFLEKHSES--LF------KDPFLAEYVEQLKEKIRRRNLRQLSKPYSSISISEIAKALQLS-EE   75 (105)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHTCHH--HH------HCTTHHHHHHHHHHHHHHHHHHHHHHC-SEEEHHHHHHHHTCC-HH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHH--HH------cCccHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHhccc-hH
Confidence            578889999999999999988221  11      1234456888999999999999999999999999999999998 78


Q ss_pred             HHHHHHhh
Q psy13230        112 QMVEFGKK  119 (132)
Q Consensus       112 el~~Fa~e  119 (132)
                      +++....+
T Consensus        76 ~vE~~l~~   83 (105)
T PF01399_consen   76 EVESILID   83 (105)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            88888654

This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15) []. Apparently, all of the characterised proteins containing PCI domains are parts of larger multi-protein complexes. Proteins with PCI domains include budding yeast proteasome regulatory components Rpn3(Sun2), Rpn5, Rpn6, Rpn7and Rpn9 []; mammalian proteasome regulatory components p55, p58 and p44.5, and translation initiation factor 3 complex subunits p110 and INT6 [, ]; Arabidopsis COP9 and FUS6/COP11 []; mammalian G-protein pathway suppressor GPS1, and several uncharacterised ORFs from plant, nematodes and mammals. The complete homology domain comprises approx. 200 residues, the highest conservation is found in the C-terminal half. Several of the proteins mentioned above have no detectable homology to the N-terminal half of the domain.; GO: 0005515 protein binding; PDB: 3TXM_A 3TXN_A 1UFM_A 3CHM_A 3T5X_A 3T5V_B.

>KOG1861|consensus

Probab=93.12  E-value=0.6  Score=42.15  Aligned_cols=100  Identities=20%  Similarity=0.247  Sum_probs=77.7

Q ss_pred             cchhhHHHHHHHhc-cCChhHHHHHHhhhchhhh-------HHhccC---------------CCCCccHHHHHHHHHHHH
Q psy13230         25 KNEMLGLNLLYLLS-QNRVAEFHMELERIQYEDM-------IFLAKD---------------GVPSPRYNAFMETLIDTT   81 (132)
Q Consensus        25 ~~~ilgL~LL~LLs-qnriaeFHteLE~l~~~~~-------V~~~~~---------------~vP~~~y~~Fm~~L~~TI   81 (132)
                      ....++-.+||-+- .|++ |.-++|-.|..++.       .++-++               +.|.-. .+.||..++.-
T Consensus       386 ~~EF~AYriLY~i~tkN~~-di~sll~~lt~E~ked~~V~hAL~vR~A~~~GNY~kFFrLY~~AP~M~-~yLmdlF~erE  463 (540)
T KOG1861|consen  386 YLEFTAYRILYYIFTKNYP-DILSLLRDLTEEDKEDEAVAHALEVRSAVTLGNYHKFFRLYLTAPNMS-GYLMDLFLERE  463 (540)
T ss_pred             hhhHHHHHHHHHHHhcCch-HHHHHHHhccHhhccCHHHHHHHHHHHHHHhccHHHHHHHHhhcccch-hHHHHHHHHHH
Confidence            55667777776554 5555 99999988887655       122222               234222 56788899999


Q ss_pred             HHHHHHhHHHhcC-cccHHHHHhhhCCCCHHHHHHHHhhcCCeeec
Q psy13230         82 RNEIASCIEKAYT-VISVGDTAQKLHIGSEKQMVEFGKKVKNIVYF  126 (132)
Q Consensus        82 R~eIA~ciEkAY~-sLsl~~a~~LL~~~s~~el~~Fa~ergW~vd~  126 (132)
                      |...-.-|.|||. +|+++..++-|-|++-++++.|-++.+|+-+.
T Consensus       464 R~~Al~ii~KsyrP~i~~~fi~~~laf~~~e~c~~~l~~~~~~~~~  509 (540)
T KOG1861|consen  464 RKKALTIICKSYRPTITVDFIASELAFDSMEDCVNFLNEQNLTYDS  509 (540)
T ss_pred             HHHHHHHHHHHcCCCccHHHHhhhhhhchHHHHHHHHhccCccccc
Confidence            9999999999999 99999999999999999999999999998654

>smart00753 PAM PCI/PINT associated module

Probab=92.73  E-value=0.46  Score=31.63  Aligned_cols=45  Identities=22%  Similarity=0.251  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhh
Q psy13230         74 METLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKK  119 (132)
Q Consensus        74 m~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~e  119 (132)
                      .+.+...+|...-....+.|+++++++.++.+.++ .++++.++.+
T Consensus         3 ~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~-~~~vE~~i~~   47 (88)
T smart00753        3 VERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLS-VPEVEKLVSK   47 (88)
T ss_pred             HHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHH
Confidence            46688899999989999999999999999999998 5578777654

>smart00088 PINT motif in proteasome subunits, Int-6, Nip-1 and TRIP-15

Probab=92.73  E-value=0.46  Score=31.63  Aligned_cols=45  Identities=22%  Similarity=0.251  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhh
Q psy13230         74 METLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKK  119 (132)
Q Consensus        74 m~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~e  119 (132)
                      .+.+...+|...-....+.|+++++++.++.+.++ .++++.++.+
T Consensus         3 ~~~l~~~~~~~~l~~l~~~y~~i~~~~i~~~~~l~-~~~vE~~i~~   47 (88)
T smart00088        3 VERLQRKIRLTNLLQLSEPYSSISLSDLAKLLGLS-VPEVEKLVSK   47 (88)
T ss_pred             HHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHHH
Confidence            46688899999989999999999999999999998 5578777654

Also called the PCI (Proteasome, COP9, Initiation factor 3) domain. Unknown function.

>KOG3252|consensus

Probab=90.90  E-value=1  Score=36.41  Aligned_cols=52  Identities=19%  Similarity=-0.003  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhhcCCeeecee
Q psy13230         77 LIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFYI  128 (132)
Q Consensus        77 L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~ergW~vd~~~  128 (132)
                      .-+.||.-+..-+.-.|.+|+-+-.++|||-.+.+++...+++-||..+...
T Consensus       133 Fedsvr~yachvv~iTyQkI~k~lLaellG~~sDs~le~~~~~~GW~a~e~G  184 (217)
T KOG3252|consen  133 FEDSVRKYACHVVGITYQKIDKWLLAELLGGLSDSQLEVWMTKYGWIADESG  184 (217)
T ss_pred             HHHHHHHHHHHheechHhhchHHHHHHhhCcccHHHHHHHHHHccceecCCc
Confidence            4689999999999999999999999999999999999999999999998653

>KOG2581|consensus

Probab=90.04  E-value=0.84  Score=40.78  Aligned_cols=72  Identities=25%  Similarity=0.293  Sum_probs=50.1

Q ss_pred             cCChhHHHHHHhhhchhhhHHhccCCCCCccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHh
Q psy13230         39 QNRVAEFHMELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGK  118 (132)
Q Consensus        39 qnriaeFHteLE~l~~~~~V~~~~~~vP~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~  118 (132)
                      -|+++.|...||..-..   +++.+     .|.. +-.|...|=..-.+.|.-+|++||+.|.|+-|+++|+++++-.+.
T Consensus       330 ~gdlkkF~~~leq~k~~---f~~D~-----ty~L-ivRLR~NVIkTgIR~ISlsYSRISl~DIA~kL~l~Seed~EyiVa  400 (493)
T KOG2581|consen  330 LGDLKKFNETLEQFKDK---FQADG-----TYTL-IVRLRHNVIKTGIRKISLSYSRISLQDIAKKLGLNSEEDAEYIVA  400 (493)
T ss_pred             HhhHHHHHHHHHHHHHH---HhhCC-----cchH-HHHHHHHHHHHhhhheeeeeeeccHHHHHHHhcCCCchhHHHHHH
Confidence            58999999999987432   33332     2333 233444444444567899999999999999999999887766554


Q ss_pred             h
Q psy13230        119 K  119 (132)
Q Consensus       119 e  119 (132)
                      +
T Consensus       401 k  401 (493)
T KOG2581|consen  401 K  401 (493)
T ss_pred             H
Confidence            4

>PF04800 ETC_C1_NDUFA4: ETC complex I subunit conserved region; InterPro: IPR006885 This entry represents prokaryotic NADH-ubiquinone oxidoreductase subunits (1

Probab=84.33  E-value=0.68  Score=33.39  Aligned_cols=22  Identities=9%  Similarity=0.191  Sum_probs=18.6

Q ss_pred             hhhCCCCHHHHHHHHhhcCCee
Q psy13230        103 QKLHIGSEKQMVEFGKKVKNIV  124 (132)
Q Consensus       103 ~LL~~~s~~el~~Fa~ergW~v  124 (132)
                      .-|.|+|.+++++||+++||..
T Consensus        51 v~l~F~skE~Ai~yaer~G~~Y   72 (101)
T PF04800_consen   51 VRLKFDSKEDAIAYAERNGWDY   72 (101)
T ss_dssp             CEEEESSHHHHHHHHHHCT-EE
T ss_pred             eEeeeCCHHHHHHHHHHcCCeE
Confidence            4578899999999999999985

6.5.3 from EC, 1.6.99.3 from EC) from complex I of the electron transport chain initially identified in Neurospora crassa as a 21 kDa protein [].; GO: 0016651 oxidoreductase activity, acting on NADH or NADPH, 0022900 electron transport chain, 0005743 mitochondrial inner membrane; PDB: 2JYA_A 2LJU_A.

>KOG3442|consensus

Probab=82.25  E-value=4.9  Score=30.38  Aligned_cols=60  Identities=18%  Similarity=0.236  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHh-----------------cCcccHHHHHhhhCCC---CHHHHHHHHhh---cCCeeecee
Q psy13230         72 AFMETLIDTTRNEIASCIEKA-----------------YTVISVGDTAQKLHIG---SEKQMVEFGKK---VKNIVYFYI  128 (132)
Q Consensus        72 ~Fm~~L~~TIR~eIA~ciEkA-----------------Y~sLsl~~a~~LL~~~---s~~el~~Fa~e---rgW~vd~~~  128 (132)
                      .+-..+..+.|++||.....|                 |..|++.+|+.+|+.+   |.+++.+-=+.   -+=+-.++.
T Consensus        15 vvgrAf~~A~RQeia~s~~aa~~~~a~k~g~~~~~~~~~~~iTlqEa~qILnV~~~ln~eei~k~yehLFevNdkskGGS   94 (132)
T KOG3442|consen   15 VVGRAFVQAYRQEIAASQQAAARQAAGKSGTRSAEANSNGKITLQEAQQILNVKEPLNREEIEKRYEHLFEVNDKSKGGS   94 (132)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccccccccccccHHHHhhHhCCCCCCCHHHHHHHHHHHHhccCcccCcc
Confidence            344568899999998876532                 6789999999999998   55555543211   122223466


Q ss_pred             eee
Q psy13230        129 FYI  131 (132)
Q Consensus       129 ~~~  131 (132)
                      ||+
T Consensus        95 FYL   97 (132)
T KOG3442|consen   95 FYL   97 (132)
T ss_pred             eee
Confidence            775

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	132
4b0z_A	229	Crystal Structure Of S. Pombe Rpn12 Length = 229		1e-05

>pdb|4B0Z|A Chain A, Crystal Structure Of S. Pombe Rpn12 Length = 229

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/118 (30%), Positives = 57/118 (48%), Gaps = 29/118 (24%)
Query: 38  SQNRVAEFHMELERIQ----------YEDMIFL-------AKDGVPS-------PRYNAF 73
           S+NR+AEFH  LE +            E +I L       A D V S       P ++ F
Sbjct: 109 SENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSYF 168
Query: 74  METLIDTTRNEIASCIEKAYTVISVGDTAQKLHI----GSEKQMVEFGKKVKN-IVYF 126
           M+ ++   RNEIA+C EK Y+ I + +    L++     +EK   E G  +++ ++YF
Sbjct: 169 MKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEERGWDIRDGVIYF 226

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	132
4b4t_T	274	26S proteasome regulatory subunit RPN12; hydrolase	99.98
4b0z_A	229	RPN12, 26S proteasome regulatory subunit RPN12; pr	99.97
1rz4_A	226	Eukaryotic translation initiation factor 3 subuni;	99.84
3t5v_A	316	Nuclear mRNA export protein SAC3; PCI, mRNA nuclea	98.91
1ufm_A	84	COP9 complex subunit 4; helix-turn-helix, structur	91.78
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	89.8
4b4t_S	523	RPN3, 26S proteasome regulatory subunit RPN3; hydr	88.76
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	85.59
2lju_A	108	Putative oxidoreductase; structural genomics, seat	83.75
2jya_A	106	AGR_C_3324P, uncharacterized protein ATU1810; prot	81.92
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	80.4

>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=99.98  E-value=5.7e-33  Score=225.64  Aligned_cols=119  Identities=24%  Similarity=0.344  Sum_probs=106.8

Q ss_pred             cccC-CCCCCCcCcchhhHHHHHHHhccCChhHHHHHHhhhchhh---h----------------------HHh--ccCC
Q psy13230         13 SLSF-SRVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYED---M----------------------IFL--AKDG   64 (132)
Q Consensus        13 ~~~~-~~lp~S~~~~~ilgL~LL~LLsqnriaeFHteLE~l~~~~---~----------------------V~~--~~~~   64 (132)
                      |+.+ +.+|+|+++++++|+||||||+|||++|||++||.||...   .                      +|.  .+.+
T Consensus        89 Y~d~~~~l~~s~~~~e~~~~~LLylL~~n~~~efh~~Le~L~~~~~~~~~d~~Ik~al~le~al~eGnY~kff~l~~~~~  168 (274)
T 4b4t_T           89 YFSNNHKLSESDKKSKLISLYLLNLLSQNNTTKFHSELQYLDKHIKNLEDDSLLSYPIKLDRWLMEGSYQKAWDLLQSGS  168 (274)
T ss_dssp             TTTTSSCSSCSHHHHHHHHHHHHHHHHHHCSTHHHHHHHSSSCSSSTTTCCHHHHHHHHHHHHHHHTCSHHHHHHHHTCT
T ss_pred             HHhhhccCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHhcchhhHhHhcChHHHHHHHHHHHHHcCCHHHHHHHHhcCC
Confidence            3443 4589999999999999999999999999999999999531   1                      342  4667


Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhhcCCeeeceeeee
Q psy13230         65 VPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFYIFYI  131 (132)
Q Consensus        65 vP~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~ergW~vd~~~~~~  131 (132)
                      +|+++|++||+++++|||.+||+|+||||.+||+++++++|+|+|++|+.+|+++|||+++++..|.
T Consensus       169 ~p~~~~~~f~d~l~~~iR~~a~~~i~kaY~~i~l~~~~~~L~F~s~~e~~~F~~~~gW~~~~~~v~F  235 (274)
T 4b4t_T          169 QNISEFDSFTDILKSAIRDEIAKNTELSYDFLPLSNIKALLFFNNEKETEKFALERNWPIVNSKVYF  235 (274)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHTCCSHHHHHHHHHHTTCCCCSSCCCC
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHhCCCCHHHHHHHHHHcCCEEeCCEeEE
Confidence            8999999999999999999999999999999999999999999999999999999999999988774

>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}

Probab=99.97  E-value=4e-31  Score=209.09  Aligned_cols=115  Identities=30%  Similarity=0.473  Sum_probs=107.7

Q ss_pred             CCCCCCcCcchhhHHHHHHHhccCChhHHHHHHhhhchhhh------------------------HHhccCCCCCccHHH
Q psy13230         17 SRVPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM------------------------IFLAKDGVPSPRYNA   72 (132)
Q Consensus        17 ~~lp~S~~~~~ilgL~LL~LLsqnriaeFHteLE~l~~~~~------------------------V~~~~~~vP~~~y~~   72 (132)
                      +.+|+|+++..++|+|||++|++|+++|||++||.+|.+..                        +|...++.|++.|.+
T Consensus        88 ~~~~~s~~~~e~~~~~LL~lL~~~~~~ef~~~le~l~~~~~~~~~~~I~~al~l~~al~~GnY~kff~l~~~~p~~~~~~  167 (229)
T 4b0z_A           88 DSLVPSSRMGLVTGLNLLYLLSENRIAEFHTALESVPDKSLFERDPYVEWVISLEQNVMEGAFDKVASMIRSCNFPEFSY  167 (229)
T ss_dssp             SCCCCCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTTHHHHCHHHHHHHHHHHHHHTTCHHHHHHHHHTCCCGGGHH
T ss_pred             ccCCCCccHHHHHHHHHHHHHHcCCchHHHHHHHhcChHHHhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcCccchHHH
Confidence            35789999999999999999999999999999999997642                        566677899999999


Q ss_pred             HHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhhcCCeeeceeeee
Q psy13230         73 FMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFYIFYI  131 (132)
Q Consensus        73 Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~ergW~vd~~~~~~  131 (132)
                      ||+.+++++|.++++|++|||++||+++++++|+|+|++|+.+|+++|||+++++.+|.
T Consensus       168 ~~~~l~~~vR~~~l~~i~kaY~~i~l~~~~~~L~f~s~~e~~~f~~~~gw~i~dg~i~F  226 (229)
T 4b0z_A          168 FMKIVMSMVRNEIATCAEKVYSEIPLSNATSLLYLENTKETEKLAEERGWDIRDGVIYF  226 (229)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCSEEEHHHHHHHTTCSSHHHHHHHHHHHTCEEETTEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhCCCCHHHHHHHHHHcCCEEeCCEEec
Confidence            99999999999999999999999999999999999999999999999999999998885

>1rz4_A Eukaryotic translation initiation factor 3 subuni; heat analogous motif, winged-helix, biosynthetic protein; 2.10A {Homo sapiens} SCOP: a.4.5.53 a.118.1.18

Probab=99.84  E-value=4.5e-21  Score=152.38  Aligned_cols=107  Identities=16%  Similarity=0.027  Sum_probs=90.5

Q ss_pred             CCCCcCcchhhHHHHHHHhccCChhHHHHHHhhhchhhh----------------------HHhccCCCCCccHHHHHHH
Q psy13230         19 VPESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM----------------------IFLAKDGVPSPRYNAFMET   76 (132)
Q Consensus        19 lp~S~~~~~ilgL~LL~LLsqnriaeFHteLE~l~~~~~----------------------V~~~~~~vP~~~y~~Fm~~   76 (132)
                      +.|+..+.+++|++||.+|+++..+|||+.+++||....                      +|.+-+.-  +++...+.-
T Consensus        56 ~~p~~~~~~ii~~iLlk~L~~~p~~DF~~~l~LIp~~~~~~~~I~~i~~L~~~L~~~~y~~fW~~l~~~--~~l~~~i~g  133 (226)
T 1rz4_A           56 FNPAFFQTTVTAQILLKALTNLPHTDFTLCKCMIDQAHQEERPIRQILYLGDLLETCHFQAFWQALDEN--MDLLEGITG  133 (226)
T ss_dssp             HSGGGCCHHHHHHHHHHHHHTTTSTHHHHHHHTSCHHHHTSTTHHHHHHHHHHHHTTCHHHHHHHSCTT--CHHHHTSTT
T ss_pred             cCCcccchhHHHHHHHHHHHcCCHHHHHHHHHhCChhhhcCHHHHHHHHHHHHHHcCCHHHHHHHHhcC--hhHHHHHhH
Confidence            478999999999999999999999999999999997544                      55544332  233334444


Q ss_pred             HHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhhcCCeeece
Q psy13230         77 LIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFY  127 (132)
Q Consensus        77 L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~ergW~vd~~  127 (132)
                      +.++||++||.|+++||.+||+++++++||+.|++++.+|++++||++|++
T Consensus       134 f~dsIR~~I~~~i~~aY~sI~~~~la~lLg~~s~~el~~fi~~~GW~vd~~  184 (226)
T 1rz4_A          134 FEDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWSADES  184 (226)
T ss_dssp             HHHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHHTCEECC-
T ss_pred             HHHHHHHHHHHHHHHHHhhCCHHHHHHHHcCCCHHHHHHHHHHCCCEECCC
Confidence            999999999999999999999999999998778999999999999999644

>3t5v_A Nuclear mRNA export protein SAC3; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}

Probab=98.91  E-value=4.6e-09  Score=86.79  Aligned_cols=104  Identities=13%  Similarity=0.160  Sum_probs=85.4

Q ss_pred             CCCcCcchhhHHHHHHHhccCChhHHHHHHhhhchhhh----------HHhc--------c---------CC--------
Q psy13230         20 PESPYKNEMLGLNLLYLLSQNRVAEFHMELERIQYEDM----------IFLA--------K---------DG--------   64 (132)
Q Consensus        20 p~S~~~~~ilgL~LL~LLsqnriaeFHteLE~l~~~~~----------V~~~--------~---------~~--------   64 (132)
                      .+++++..+.|.+||+.|.+   ++++.+++.+|.+..          +..+        +         ++        
T Consensus       110 ~~~~ne~EF~aY~lL~~l~~---~~~~~~l~~Lp~~i~~~p~Vq~AL~l~~a~~~~~~~e~~~~~~~~~~gNY~rFFrL~  186 (316)
T 3t5v_A          110 GTCPNEAEFRAYALLSKIRD---PQYDENIQRLPKHIFQDKLVQMALCFRRVISNSAYTERGFVKTENCLNFYARFFQLM  186 (316)
T ss_dssp             CCCTTHHHHHHHHHHHSTTC---THHHHHHTTSCHHHHTSHHHHHHHHHHHHHCCTTCCCTTCCCCSSCCCCHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHhcc---chHHHHHHhCCHHHhcCHHHHHHHHHHHHHHhcccccccccccccccchHHHHHHHH
Confidence            35789999999999999976   478899999997654          1111        0         11        


Q ss_pred             -CCCccH--HHHHHHHHHHHHHHHHHhHHHhc----CcccHHHHHhhhCCCCHHHHHHHHhhcCCeeec
Q psy13230         65 -VPSPRY--NAFMETLIDTTRNEIASCIEKAY----TVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYF  126 (132)
Q Consensus        65 -vP~~~y--~~Fm~~L~~TIR~eIA~ciEkAY----~sLsl~~a~~LL~~~s~~el~~Fa~ergW~vd~  126 (132)
                       -|...|  ..+|+...+++|..+..|+.+||    ..+|++.++++|+|++++|+.+|++..||++++
T Consensus       187 ~~~~~pyL~aclle~~~~~vR~~AL~~i~kay~~k~~~~pl~~L~~~L~Fds~ee~~~F~~~~gl~~~~  255 (316)
T 3t5v_A          187 QSPSLPLLMGFFLQMHLTDIRFYALRALSHTLNKKHKPIPFIYLENMLLFNNRQEIIEFCNYYSIEIIN  255 (316)
T ss_dssp             TCTTSCHHHHHHHGGGHHHHHHHHHHHHHHHSCTTCCCEEHHHHHHHTTCSSHHHHHHHHHHTTCCEET
T ss_pred             hccCCChHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCHHHHHHHhCCCCHHHHHHHHHHCCCeEeC
Confidence             133334  67888888999999999999999    489999999999999999999999999999975

>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47

Probab=91.78  E-value=0.18  Score=33.77  Aligned_cols=42  Identities=14%  Similarity=0.120  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhh
Q psy13230         77 LIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKK  119 (132)
Q Consensus        77 L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~e  119 (132)
                      |.+.+.++--..+.+-|++|+++..+++++++ ++++++++.+
T Consensus        12 L~~~v~E~nl~~is~~Y~~Isl~~La~ll~ls-~~~vE~~ls~   53 (84)
T 1ufm_A           12 LDRAVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIASQ   53 (84)
T ss_dssp             CCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCeeeHHHHHHHHCcC-HHHHHHHHHH
Confidence            34455555555688899999999999999998 8888888654

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=89.80  E-value=1.9  Score=36.14  Aligned_cols=50  Identities=20%  Similarity=0.203  Sum_probs=42.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhh
Q psy13230         69 RYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKK  119 (132)
Q Consensus        69 ~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~e  119 (132)
                      ......+.|...||...-.-+-+.|+++++++.++.++++ +++++....+
T Consensus       290 ~l~~h~~~L~~~Ir~~~L~~i~~pYsrIsl~~iA~~l~ls-~~evE~~L~~  339 (394)
T 3txn_A          290 IVQAHLGTLYDTMLEQNLCRIIEPYSRVQVAHVAESIQLP-MPQVEKKLSQ  339 (394)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCSEEEHHHHHHHHTCC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHhhceeeHHHHHHHHCcC-HHHHHHHHHH
Confidence            3455677889999998888888999999999999999995 8888887644

>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=88.76  E-value=0.25  Score=43.33  Aligned_cols=73  Identities=18%  Similarity=0.238  Sum_probs=52.9

Q ss_pred             ccCChhHHHHHHhhhchhhhHHhccCCCCCccHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHH
Q psy13230         38 SQNRVAEFHMELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFG  117 (132)
Q Consensus        38 sqnriaeFHteLE~l~~~~~V~~~~~~vP~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa  117 (132)
                      ..|++.+|...||.-.   .+|...++.      ..++.|...+...-...+.++|++||+.+.++.|+++|+++++.++
T Consensus       353 r~GdL~~F~~~L~~h~---~~F~~Dgty------~LI~rLr~~vir~~irkis~~YsrIsL~dIa~kL~L~s~eeaE~iV  423 (523)
T 4b4t_S          353 KLGDLKKFTSTITKYK---QLLLKDDTY------QLCVRLRSNVIKTGIRIISLTYKKISLRDICLKLNLDSEQTVEYMV  423 (523)
T ss_dssp             HHTCHHHHHHHHHHTH---HHHHHTTCT------HHHHHHHHHHHHHHHHHSCCCSSEECHHHHHHHHHHHHSSCHHHHH
T ss_pred             HcCCHHHHHHHHHHhc---ceeccCChh------HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHhCCCCHHHHHHHH
Confidence            3566666666665432   156665543      4566777777777778889999999999999999998777777765


Q ss_pred             hh
Q psy13230        118 KK  119 (132)
Q Consensus       118 ~e  119 (132)
                      .+
T Consensus       424 Ak  425 (523)
T 4b4t_S          424 SR  425 (523)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=85.59  E-value=2  Score=35.78  Aligned_cols=47  Identities=17%  Similarity=0.151  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhh
Q psy13230         72 AFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKK  119 (132)
Q Consensus        72 ~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~e  119 (132)
                      .-...|...|++.--..+.+-|++|+++..+++|+++ +++++.++.+
T Consensus       336 ~~~~~L~~~v~ehnl~~i~k~Ys~I~l~~la~lL~l~-~~evE~~ls~  382 (445)
T 4b4t_P          336 HHWEDLQKRVIEHNLRVISEYYSRITLLRLNELLDLT-ESQTETYISD  382 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHEEEEEHHHHHHHHTSC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhceeeHHHHHHHhCcC-HHHHHHHHHH
Confidence            4467788999999888999999999999999999997 9999988754

>2lju_A Putative oxidoreductase; structural genomics, seattle structural GENO center for infectious disease, ssgcid; NMR {Ehrlichia chaffeensis}

Probab=83.75  E-value=0.49  Score=33.54  Aligned_cols=21  Identities=10%  Similarity=0.031  Sum_probs=19.2

Q ss_pred             hhCCCCHHHHHHHHhhcCCee
Q psy13230        104 KLHIGSEKQMVEFGKKVKNIV  124 (132)
Q Consensus       104 LL~~~s~~el~~Fa~ergW~v  124 (132)
                      -|.|+|.+++++||+++||..
T Consensus        63 ~L~F~skE~AiayAek~G~~y   83 (108)
T 2lju_A           63 CLSFTTRELAIAYAVAHKIDY   83 (108)
T ss_dssp             CEEESSHHHHHHHHHHTTCEE
T ss_pred             eEecCCHHHHHHHHHHcCCEE
Confidence            478999999999999999985

>2jya_A AGR_C_3324P, uncharacterized protein ATU1810; protein with unknown function ATU1810, ontario centre for ST proteomics, OCSP; NMR {Agrobacterium tumefaciens str}

Probab=81.92  E-value=0.58  Score=33.08  Aligned_cols=21  Identities=14%  Similarity=0.192  Sum_probs=19.1

Q ss_pred             hhCCCCHHHHHHHHhhcCCee
Q psy13230        104 KLHIGSEKQMVEFGKKVKNIV  124 (132)
Q Consensus       104 LL~~~s~~el~~Fa~ergW~v  124 (132)
                      -|.|+|.+++++||+++||..
T Consensus        55 ~L~F~skE~AiayAek~G~~y   75 (106)
T 2jya_A           55 KLTFETQEQAEAYAQRKGIEY   75 (106)
T ss_dssp             EEEESSHHHHHHHHHHHTCEE
T ss_pred             eEecCCHHHHHHHHHHcCCEE
Confidence            478999999999999999985

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.40  E-value=3.1  Score=34.29  Aligned_cols=49  Identities=10%  Similarity=0.131  Sum_probs=40.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHh
Q psy13230         69 RYNAFMETLIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGK  118 (132)
Q Consensus        69 ~y~~Fm~~L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~  118 (132)
                      ....-.+.|...||...-.-+-+.|++++++..++.|+++ ++++++...
T Consensus       321 ~l~~h~~~l~~~ir~~~l~q~~~~Ys~I~l~~mA~~l~~s-~~~~E~~L~  369 (429)
T 4b4t_R          321 YLNRHADFFVREMRRKVYAQLLESYKTLSLKSMASAFGVS-VAFLDNDLG  369 (429)
T ss_dssp             TSTTTHHHHHHHHHHHHHHHHHHTCSEEEHHHHHHHHTSC-HHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHhceeeHHHHHHHhCcC-HHHHHHHHH
Confidence            3344467789999999999999999999999999999997 777666543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	132
d1rz4a1	85	Eukaryotic translation initiation factor 3 subunit	98.1
d1ufma_	84	COP9 signalosome complex subunit 4, GSN4 {Mouse (M	93.26
d2osoa1	152	Hypothetical protein MJ1460 {Methanococcus jannasc	86.49
d1ng7a_	60	Soluble domain of poliovirus core protein 3a {Poli	81.54

>d1rz4a1 a.4.5.53 (A:132-216) Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
domain: Eukaryotic translation initiation factor 3 subunit 12, eIF3k, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=3.2e-06  Score=56.66  Aligned_cols=51  Identities=20%  Similarity=-0.024  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhhcCCeeecee
Q psy13230         78 IDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKKVKNIVYFYI  128 (132)
Q Consensus        78 ~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~ergW~vd~~~  128 (132)
                      .+.||.-|+.-+..+|.+|+.+..+.+|++.+++++.+++++-||+++++.
T Consensus         4 edsIR~~i~~vv~iTyq~I~~~~L~e~LG~~~d~~L~~~i~~~gW~~~~~g   54 (85)
T d1rz4a1           4 EDSVRKFICHVVGITYQHIDRWLLAEMLGDLSDSQLKVWMSKYGWSADESG   54 (85)
T ss_dssp             HHHHHHHHHHHHHHHCSEECHHHHHHHTTSCCHHHHHHHHHHHTCEECC--
T ss_pred             HHHHHHHHHhheeeeeeEEcHHHHHHHhCCCCHHHHHHHHHHcCCEEcCCC
Confidence            589999999999999999999999999999999999999999999997654

>d1ufma_ a.4.5.47 (A:) COP9 signalosome complex subunit 4, GSN4 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: PCI domain (PINT motif)
domain: COP9 signalosome complex subunit 4, GSN4
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.26  E-value=0.042  Score=35.32  Aligned_cols=42  Identities=14%  Similarity=0.120  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHhHHHhcCcccHHHHHhhhCCCCHHHHHHHHhh
Q psy13230         77 LIDTTRNEIASCIEKAYTVISVGDTAQKLHIGSEKQMVEFGKK  119 (132)
Q Consensus        77 L~~TIR~eIA~ciEkAY~sLsl~~a~~LL~~~s~~el~~Fa~e  119 (132)
                      |.+.|++.--..+.+.|++|++++.+++|+++ +++++..+.+
T Consensus        12 L~~~i~Ehni~~is~~Y~~Isl~~la~~l~l~-~~evE~~l~~   53 (84)
T d1ufma_          12 LDRAVIEHNLLSASKLYNNITFEELGALLEIP-AAKAEKIASQ   53 (84)
T ss_dssp             CCHHHHHHHHHHHHHSCSEEEHHHHHHHTTSC-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhceeeHHHHHHHHCCC-HHHHHHHHHH
Confidence            45566777777788999999999999999996 8888888655

>d2osoa1 d.278.1.3 (A:5-156) Hypothetical protein MJ1460 {Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a+b)
fold: Ligand-binding domain in the NO signalling and Golgi transport
superfamily: Ligand-binding domain in the NO signalling and Golgi transport
family: MJ1460-like
domain: Hypothetical protein MJ1460
species: Methanococcus jannaschii [TaxId: 2190]

Probab=86.49  E-value=0.37  Score=33.52  Aligned_cols=71  Identities=17%  Similarity=0.193  Sum_probs=48.9

Q ss_pred             HHHHHhhhchhhhHHhccCCCCCccHHHHHHHHHHHHHHHHHHhHHHhcCccc---HHHHHhhhCCCCHHHHHHHHhhcC
Q psy13230         45 FHMELERIQYEDMIFLAKDGVPSPRYNAFMETLIDTTRNEIASCIEKAYTVIS---VGDTAQKLHIGSEKQMVEFGKKVK  121 (132)
Q Consensus        45 FHteLE~l~~~~~V~~~~~~vP~~~y~~Fm~~L~~TIR~eIA~ciEkAY~sLs---l~~a~~LL~~~s~~el~~Fa~erg  121 (132)
                      |---||.+|++..+ ..+.++|...|..|...+++.+-+.       +...+=   =.+.++.+..++.+++.+|-+++|
T Consensus         4 ~~~~~~~~~~e~~~-~~~~~ip~~~f~l~~~~l~d~l~~~-------~~~~iLY~aGk~lGr~~~~k~~eel~~ff~~~g   75 (152)
T d2osoa1           4 FPDILEAIRNEEII-KESKKIPMPYFGLFALVIFDKVKEL-------GSETSLYEIGEEFGKMLSPKNIEELKKIFKLMN   75 (152)
T ss_dssp             HHHHHHHTTCHHHH-HHSCCCCHHHHHHHHHHHHHHHC---------CCCCCHHHHHHHHHHHHCCSSHHHHHHHHHHHT
T ss_pred             cccHHHHhchhhhh-HHHhcCCHHHHHHHHHHHHHHhccc-------chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            55668999998855 4556699999999888877777441       111110   123345555678999999999999


Q ss_pred             Ce
Q psy13230        122 NI  123 (132)
Q Consensus       122 W~  123 (132)
                      |-
T Consensus        76 ~G   77 (152)
T d2osoa1          76 FG   77 (152)
T ss_dssp             CC
T ss_pred             Cc
Confidence            94

>d1ng7a_ a.178.1.1 (A:) Soluble domain of poliovirus core protein 3a {Poliovirus type 1, strain Mahoney [TaxId: 12080]}

class: All alpha proteins
fold: Soluble domain of poliovirus core protein 3a
superfamily: Soluble domain of poliovirus core protein 3a
family: Soluble domain of poliovirus core protein 3a
domain: Soluble domain of poliovirus core protein 3a
species: Poliovirus type 1, strain Mahoney [TaxId: 12080]

Probab=81.54  E-value=0.24  Score=30.30  Aligned_cols=17  Identities=18%  Similarity=0.263  Sum_probs=15.1

Q ss_pred             CHHHHHHHHhhcCCeee
Q psy13230        109 SEKQMVEFGKKVKNIVY  125 (132)
Q Consensus       109 s~~el~~Fa~ergW~vd  125 (132)
                      +.+|+++|++++||-+.
T Consensus        30 DSeEVReYCk~kgWii~   46 (60)
T d1ng7a_          30 DSQEVRDYCEKKGWIVN   46 (60)
T ss_dssp             CCHHHHHHHHHHTCCCC
T ss_pred             CcHHHHHHHHHCCeeec
Confidence            46899999999999984