Psyllid ID: psy13236
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 280 | ||||||
| 66508517 | 288 | PREDICTED: f-actin-capping protein subun | 1.0 | 0.972 | 0.695 | 1e-115 | |
| 350418891 | 288 | PREDICTED: F-actin-capping protein subun | 1.0 | 0.972 | 0.691 | 1e-115 | |
| 340713972 | 288 | PREDICTED: f-actin-capping protein subun | 1.0 | 0.972 | 0.691 | 1e-115 | |
| 383849439 | 288 | PREDICTED: F-actin-capping protein subun | 1.0 | 0.972 | 0.691 | 1e-114 | |
| 322795636 | 289 | hypothetical protein SINV_02451 [Solenop | 1.0 | 0.968 | 0.691 | 1e-114 | |
| 307168127 | 289 | F-actin-capping protein subunit alpha [C | 0.996 | 0.965 | 0.690 | 1e-113 | |
| 194881768 | 286 | GG22079 [Drosophila erecta] gi|190658180 | 0.996 | 0.975 | 0.676 | 1e-113 | |
| 19922662 | 286 | capping protein alpha [Drosophila melano | 0.996 | 0.975 | 0.676 | 1e-113 | |
| 195486662 | 286 | GE12160 [Drosophila yakuba] gi|194177701 | 0.996 | 0.975 | 0.672 | 1e-113 | |
| 194754779 | 286 | GF11927 [Drosophila ananassae] gi|190620 | 0.996 | 0.975 | 0.679 | 1e-112 |
| >gi|66508517|ref|XP_624862.1| PREDICTED: f-actin-capping protein subunit alpha-like isoform 2 [Apis mellifera] gi|328781655|ref|XP_003250011.1| PREDICTED: f-actin-capping protein subunit alpha-like isoform 1 [Apis mellifera] gi|380025038|ref|XP_003696288.1| PREDICTED: F-actin-capping protein subunit alpha-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/282 (69%), Positives = 233/282 (82%), Gaps = 2/282 (0%)
Query: 1 MLTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVK 60
++ DQEKVR+VS FILHSPPGEFNEVFNDVR LLNND LLK+ S AF QYNK+QLTPVK
Sbjct: 7 VIPDQEKVRIVSDFILHSPPGEFNEVFNDVRVLLNNDNLLKEGASGAFAQYNKDQLTPVK 66
Query: 61 LNNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIEL 120
+ S+ P LI+EHNDLG RFYD RSKQSFK+DHLR EA D E +EPD+ E WRS ++
Sbjct: 67 IEGSEYPALITEHNDLGGQRFYDARSKQSFKYDHLRKEAQDYEPYEPDSVAEPWRSALQD 126
Query: 121 ELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINI--EGN 178
E+ TYT SHY++G SVF K QG + + ACIEDHQFQPKN+WNGRWRS WT++
Sbjct: 127 EITTYTQSHYRHGACSVFGKSQGGNITLTACIEDHQFQPKNFWNGRWRSVWTVSFSPSSG 186
Query: 179 NVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAIS 238
N E++G+LKVQVHYYEDGNVQLVSSK++KE++ ++SE+QTA+E+++L+EESE YQ AIS
Sbjct: 187 NAELRGSLKVQVHYYEDGNVQLVSSKEVKESLPISSEKQTAKELIRLVEESENDYQTAIS 246
Query: 239 ENYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKNQ 280
ENY TMSDTTFKALRRQLPV R KIDWNKIVSYSIGKELK+Q
Sbjct: 247 ENYQTMSDTTFKALRRQLPVMRTKIDWNKIVSYSIGKELKSQ 288
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350418891|ref|XP_003492002.1| PREDICTED: F-actin-capping protein subunit alpha-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
| >gi|340713972|ref|XP_003395507.1| PREDICTED: f-actin-capping protein subunit alpha-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
| >gi|383849439|ref|XP_003700352.1| PREDICTED: F-actin-capping protein subunit alpha-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
| >gi|322795636|gb|EFZ18315.1| hypothetical protein SINV_02451 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
| >gi|307168127|gb|EFN61406.1| F-actin-capping protein subunit alpha [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
| >gi|194881768|ref|XP_001974993.1| GG22079 [Drosophila erecta] gi|190658180|gb|EDV55393.1| GG22079 [Drosophila erecta] | Back alignment and taxonomy information |
|---|
| >gi|19922662|ref|NP_611539.1| capping protein alpha [Drosophila melanogaster] gi|195346281|ref|XP_002039694.1| GM15798 [Drosophila sechellia] gi|195585280|ref|XP_002082417.1| GD11558 [Drosophila simulans] gi|11131875|sp|Q9W2N0.1|CAPZA_DROME RecName: Full=F-actin-capping protein subunit alpha gi|7291228|gb|AAF46660.1| capping protein alpha [Drosophila melanogaster] gi|17861504|gb|AAL39229.1| GH10050p [Drosophila melanogaster] gi|194135043|gb|EDW56559.1| GM15798 [Drosophila sechellia] gi|194194426|gb|EDX08002.1| GD11558 [Drosophila simulans] gi|220945024|gb|ACL85055.1| cpa-PA [synthetic construct] gi|220954928|gb|ACL90007.1| cpa-PA [synthetic construct] | Back alignment and taxonomy information |
|---|
| >gi|195486662|ref|XP_002091600.1| GE12160 [Drosophila yakuba] gi|194177701|gb|EDW91312.1| GE12160 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
| >gi|194754779|ref|XP_001959672.1| GF11927 [Drosophila ananassae] gi|190620970|gb|EDV36494.1| GF11927 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 280 | ||||||
| FB|FBgn0034577 | 286 | cpa "capping protein alpha" [D | 0.996 | 0.975 | 0.647 | 1.5e-99 | |
| UNIPROTKB|P28497 | 286 | CAPZA2 "F-actin-capping protei | 0.992 | 0.972 | 0.579 | 6e-87 | |
| UNIPROTKB|Q5E997 | 286 | CAPZA2 "F-actin-capping protei | 0.992 | 0.972 | 0.579 | 6e-87 | |
| UNIPROTKB|F1NFP1 | 286 | CAPZA2 "F-actin-capping protei | 0.992 | 0.972 | 0.575 | 1.6e-86 | |
| UNIPROTKB|A0M8V0 | 286 | CAPZA2 "F-actin-capping protei | 0.992 | 0.972 | 0.575 | 1.6e-86 | |
| UNIPROTKB|Q29221 | 286 | CAPZA2 "F-actin-capping protei | 0.992 | 0.972 | 0.575 | 1.6e-86 | |
| MGI|MGI:106222 | 286 | Capza2 "capping protein (actin | 0.992 | 0.972 | 0.571 | 2e-86 | |
| RGD|1549770 | 286 | Capza2 "capping protein (actin | 0.992 | 0.972 | 0.571 | 2e-86 | |
| UNIPROTKB|P47755 | 286 | CAPZA2 "F-actin-capping protei | 0.992 | 0.972 | 0.575 | 5.4e-86 | |
| UNIPROTKB|A4FUA8 | 286 | CAPZA1 "F-actin-capping protei | 0.992 | 0.972 | 0.582 | 1.1e-85 |
| FB|FBgn0034577 cpa "capping protein alpha" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
Identities = 182/281 (64%), Positives = 221/281 (78%)
Query: 2 LTDQEKVRVVSGFILHSPPGEFNEVFNDVRGXXXXXXXXXXXXSKAFVQYNKEQLTPVKL 61
+TD EKVR+VS FILH+PPGEFNEVFNDVR S AF QYNK+QLTPV++
Sbjct: 6 ITDAEKVRIVSDFILHAPPGEFNEVFNDVRELLKNDTLLKDGASHAFAQYNKDQLTPVRI 65
Query: 62 NNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELE 121
+D +ISEHNDLGNGRFYDPR+KQ+FK+DHLR EASD + E D + E WR+ ++LE
Sbjct: 66 EGTDHNAIISEHNDLGNGRFYDPRTKQAFKYDHLRKEASDYQDVEADATAEPWRAALDLE 125
Query: 122 LDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNN-- 179
YTASHY++G SSVF K QG + + CIEDHQFQPKNYWNGRWRS W + + +
Sbjct: 126 TLAYTASHYRHGVSSVFGKAQGNQITLTICIEDHQFQPKNYWNGRWRSQWHVTFQAGSGT 185
Query: 180 VEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISE 239
E+KG LKVQVHYYEDGNVQLVSSK+ +E+VVV++E+Q A+E+++LIE++E YQ AISE
Sbjct: 186 AELKGVLKVQVHYYEDGNVQLVSSKECRESVVVSNEQQVAKEVIRLIEDAENEYQLAISE 245
Query: 240 NYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKNQ 280
NY TMSDTTFKA+RRQLP+TR KIDW+KIVSYSIGKELK Q
Sbjct: 246 NYQTMSDTTFKAMRRQLPITRTKIDWSKIVSYSIGKELKTQ 286
|
|
| UNIPROTKB|P28497 CAPZA2 "F-actin-capping protein subunit alpha-2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5E997 CAPZA2 "F-actin-capping protein subunit alpha-2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1NFP1 CAPZA2 "F-actin-capping protein subunit alpha-2" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A0M8V0 CAPZA2 "F-actin-capping protein subunit alpha-2" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q29221 CAPZA2 "F-actin-capping protein subunit alpha-2" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:106222 Capza2 "capping protein (actin filament) muscle Z-line, alpha 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| RGD|1549770 Capza2 "capping protein (actin filament) muscle Z-line, alpha 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|P47755 CAPZA2 "F-actin-capping protein subunit alpha-2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A4FUA8 CAPZA1 "F-actin-capping protein subunit alpha-1" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 280 | |||
| pfam01267 | 269 | pfam01267, F-actin_cap_A, F-actin capping protein | 1e-124 |
| >gnl|CDD|216401 pfam01267, F-actin_cap_A, F-actin capping protein alpha subunit | Back alignment and domain information |
|---|
Score = 353 bits (908), Expect = e-124
Identities = 138/272 (50%), Positives = 192/272 (70%), Gaps = 4/272 (1%)
Query: 6 EKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSD 65
EK+ ++S FI ++PPGE N+V D+R LL +D L+K +++A QYN+EQL PVKL S+
Sbjct: 1 EKIEIISSFIKNAPPGELNDVVADLRALLGDDPLIKSTIAEALEQYNEEQLVPVKLPGSE 60
Query: 66 LPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWE-PDNSTETWRSLIELELDT 124
V+ISE+N LG R++DP SK+SF DHL+ +ASD+ES+E E +R ++ L
Sbjct: 61 -KVIISEYNKLGGNRYFDPVSKKSFTVDHLKQKASDVESYELESEELELYRKSLDKALSA 119
Query: 125 YTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVEVKG 184
Y HY NG V+ K +G+ ++ I H++ PKN+WNGRWRS WT++ + +KG
Sbjct: 120 YVKDHYPNGACGVYPKSEGDK-ELAIIIVSHKYNPKNFWNGRWRSEWTLD-SSSTGSLKG 177
Query: 185 NLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENYMTM 244
+KV VHYYEDGNVQL SSKD +ETV V++++ TA IVK I E+E YQ A++EN+ T+
Sbjct: 178 KIKVDVHYYEDGNVQLKSSKDFEETVSVSNDDATASSIVKAIREAENEYQAALNENFNTL 237
Query: 245 SDTTFKALRRQLPVTRMKIDWNKIVSYSIGKE 276
+DTTFKALRRQLPVTR KI+W KI +Y +GK+
Sbjct: 238 NDTTFKALRRQLPVTRQKINWGKIGNYRLGKD 269
|
Length = 269 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 280 | |||
| PF01267 | 271 | F-actin_cap_A: F-actin capping protein alpha subun | 100.0 | |
| KOG0836|consensus | 282 | 100.0 | ||
| PF01115 | 242 | F_actin_cap_B: F-actin capping protein, beta subun | 98.31 | |
| KOG3174|consensus | 275 | 96.96 |
| >PF01267 F-actin_cap_A: F-actin capping protein alpha subunit; InterPro: IPR002189 This entry represents a component of the WASH complex | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-104 Score=730.40 Aligned_cols=270 Identities=53% Similarity=0.950 Sum_probs=242.2
Q ss_pred HHHHHHHHhhhcCCCCChHHHHHHHhhccCCCccchhHHHHHHHHHhhhcceeEEeCCCCCCeEEccccccCCCeeeeCC
Q psy13236 6 EKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGRFYDPR 85 (280)
Q Consensus 6 ek~~ii~~fi~~aPPGE~~~V~~Dl~~l~~~d~~~~~~~~~a~~~yn~~~~~~v~~~~~~~~viis~~n~l~~~~y~DP~ 85 (280)
||++||++||++||||||++|++|||.|++||.++++.+++||++||++||+||++||.+++||||+||+++++||+||+
T Consensus 1 ek~~ii~~fl~~aPPGE~~~V~~Dlr~l~~dd~~~~~~i~~a~~~yn~~q~~~v~~~~~~~~viis~~n~~~~~ry~Dp~ 80 (271)
T PF01267_consen 1 EKVEIISSFLLQAPPGEFNEVFNDLRTLLGDDSLLKEGIAEAFEQYNEEQFIPVKLPGSDHKVIISKYNKLGGNRYFDPR 80 (271)
T ss_dssp HHHHHHHHHHHT--TT-HHHHHHHHHHHHT-HHHHHHHSHHHHHHHHHHTTEEE--TTSSS-EEE-GGGBESTTEEEETT
T ss_pred CHHHHHHHHHHcCCCccHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHCcEEEEeCCCCcceEEecccccCCCeEEEec
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeccceeeeccccCCC-CCCchHHHHHHHHHHHHHhhhhcCCceEEEEeeccCCceeEEEEEEeeecCCCCccc
Q psy13236 86 SKQSFKFDHLRIEASDLESWEP-DNSTETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWN 164 (280)
Q Consensus 86 ~~~~F~~Dhl~~~~~d~e~~~~-~~~~e~~R~al~~~l~~Yv~~hyp~g~~~Vy~~~~~~~~~l~i~I~~~k~np~Nfwn 164 (280)
++++|+|||++++|+|++|++. ++.+|.+|.+|+++|++|+++|||+|+|+||+.+++++..|+|||+|++|||+||||
T Consensus 81 ~~~~F~~DHl~~~~~d~e~~~~~~~~~e~~R~~l~~~l~~Yv~~hy~~g~~~V~~~~~~~~~~l~i~I~~~k~n~~Nfwn 160 (271)
T PF01267_consen 81 SKKSFSVDHLKQKASDVEPYEPPDEELESYRDALDKALEKYVKEHYPSGACGVYPKSEEDKETLVICIVAHKYNPKNFWN 160 (271)
T ss_dssp TTEEEEEETTTTEEEEEEE-----TSSHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEETTEEEEEEEEEEEEEEGGGTEE
T ss_pred cCcEEEEeeeccEEccCccccccccchHHHHHHHHHHHHHHHHHhccCceeEEEeccCCCccEEEEEEEecccccccccC
Confidence 9999999999999999999983 457999999999999999999999999999999887766799999999999999999
Q ss_pred eeEEEEEEEEecCCceEEEEEEEEeEEEEeeceEEEEeeeeeeeceeecCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13236 165 GRWRSYWTINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENYMTM 244 (280)
Q Consensus 165 G~WrS~w~~~~~~~~~~l~G~I~v~vHYyEdGNVqL~~~k~~~~~~~~~~~~~~a~~iv~~I~~~E~~~q~~L~~~~~~l 244 (280)
|||||+|+|++.+ .++|+|+|+|+|||||||||||+++|++..++.++++.++|++||++|+++|++||++|+++|++|
T Consensus 161 G~WrS~w~~~~~~-~~~l~G~I~V~vHYyEdGNVqL~~~k~~~~~~~~~~~~~~a~~iv~~I~~~E~~~q~~L~e~~~~l 239 (271)
T PF01267_consen 161 GRWRSEWTVDFSS-SGTLSGKIKVQVHYYEDGNVQLNSSKEVSETVSVSNDEQFASDIVKAIKEAENKYQTSLNESYNNL 239 (271)
T ss_dssp EEEEEEEEEEEET-TEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEEE--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceeeEEEEEecCC-CceEEEEEEeeEEEEeecEEEEEEccccceeeccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999854 369999999999999999999999999999999888889999999999999999999999999999
Q ss_pred ChHHHhhhhhcCCCCCccccccceeeeeeccc
Q psy13236 245 SDTTFKALRRQLPVTRMKIDWNKIVSYSIGKE 276 (280)
Q Consensus 245 se~~FK~LRR~LPVTR~KidW~ki~~yrlg~d 276 (280)
|+++||+|||+||||||||||+||++||||+|
T Consensus 240 s~~tFK~LRR~LPVTRsKi~W~ki~~yrlg~d 271 (271)
T PF01267_consen 240 SEKTFKALRRQLPVTRSKINWNKIGNYRLGKD 271 (271)
T ss_dssp HHTHHHHHS-SS-TTTSS-SHHHHHTTTS---
T ss_pred hHHHHHHhhhhCCCCCCcccccccccEEecCC
Confidence 99999999999999999999999999999997
|
The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta (see IPR001698 from INTERPRO). Neither of the subunits shows sequence similarity to other filament-capping proteins []. The alpha subunit is a protein of about 268 to 286 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0008290 F-actin capping protein complex; PDB: 1MQ1_D 1MWN_X 2KBM_Y 2KZ7_A 3AAE_C 3AA6_A 3LK4_G 1IZN_A 3AA7_A 3AAA_A .... |
| >KOG0836|consensus | Back alignment and domain information |
|---|
| >PF01115 F_actin_cap_B: F-actin capping protein, beta subunit; InterPro: IPR001698 This entry represents a component of the WASH complex | Back alignment and domain information |
|---|
| >KOG3174|consensus | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 280 | ||||
| 1izn_A | 286 | Crystal Structure Of Actin Filament Capping Protein | 4e-94 | ||
| 2kxp_A | 275 | Solution Nmr Structure Of V-1 Bound To Capping Prot | 3e-92 | ||
| 4akr_A | 281 | Crystal Structure Of The Cytoplasmic Actin Capping | 1e-48 |
| >pdb|1IZN|A Chain A, Crystal Structure Of Actin Filament Capping Protein Capz Length = 286 | Back alignment and structure |
|
| >pdb|2KXP|A Chain A, Solution Nmr Structure Of V-1 Bound To Capping Protein (Cp) Length = 275 | Back alignment and structure |
| >pdb|4AKR|A Chain A, Crystal Structure Of The Cytoplasmic Actin Capping Protein Cap32_34 From Dictyostelium Discoideum Length = 281 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 280 | |||
| 3aa0_A | 286 | F-actin-capping protein subunit alpha-1; actin cap | 1e-125 | |
| 4akr_A | 281 | F-actin-capping protein subunit alpha; actin-bindi | 1e-114 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 8e-05 | |
| 1qzv_F | 154 | Plant photosystem I: subunit PSAF; photosynthesis, | 2e-04 |
| >3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A Length = 286 | Back alignment and structure |
|---|
Score = 358 bits (919), Expect = e-125
Identities = 169/278 (60%), Positives = 206/278 (74%)
Query: 2 LTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKL 61
++D+EKVR+ + FI H+PPGEFNEVFNDVR LLNND LL++ + AF QYN +Q TPVK+
Sbjct: 8 VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKI 67
Query: 62 NNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELE 121
D VLI+EH DLGNGRF DPR+K SFKFDHLR EASD + + +++ + WR +
Sbjct: 68 EGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSA 127
Query: 122 LDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVE 181
L Y HY NG +V+ K I ACIE HQFQPKN+WNGRWRS W I +
Sbjct: 128 LRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQ 187
Query: 182 VKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENY 241
V LK+QVHYYEDGNVQLVS KDI+++V V+S+ QTA+E +K+IE +E YQ AISENY
Sbjct: 188 VAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENY 247
Query: 242 MTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKN 279
TMSDTTFKALRRQLPVTR KIDWNKI+SY IGKE++N
Sbjct: 248 QTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEMQN 285
|
| >4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum} Length = 281 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 280 | |||
| 4akr_A | 281 | F-actin-capping protein subunit alpha; actin-bindi | 100.0 | |
| 3aa0_A | 286 | F-actin-capping protein subunit alpha-1; actin cap | 100.0 | |
| 3aa0_B | 244 | F-actin-capping protein subunit beta isoforms 1 A; | 98.59 | |
| 3lk4_B | 277 | F-actin-capping protein subunit beta isoforms 1 an | 98.56 | |
| 4akr_B | 290 | F-actin-capping protein subunit beta; actin-bindin | 98.33 |
| >4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-108 Score=756.34 Aligned_cols=277 Identities=36% Similarity=0.676 Sum_probs=255.9
Q ss_pred CCChHHHHHHHHHhhhcCCCCChHHHHHHHhhccCCCccchhHHHHHHHHHhhhcceeEEeCCCCCCeEEccccccCCCe
Q psy13236 1 MLTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGR 80 (280)
Q Consensus 1 ~~s~~ek~~ii~~fi~~aPPGE~~~V~~Dl~~l~~~d~~~~~~~~~a~~~yn~~~~~~v~~~~~~~~viis~~n~l~~~~ 80 (280)
|.+.+||++||++||++||||||++|++|||.|++||.++++++++||++||++||+||++||.+ ||||+||+++++|
T Consensus 1 m~~~~ek~~i~~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~~~~a~~~Yn~~q~~~v~~~g~~--viis~~n~l~~~r 78 (281)
T 4akr_A 1 MASNQELVQIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQTSKGS--ALITKEGEISNNE 78 (281)
T ss_dssp -CCHHHHHHHHHHHHHTCCTTCHHHHHHHHHTTCSCTTTTTTTHHHHHHHHHHHHTCEEEETTEE--EECCSTTEEETTE
T ss_pred CCchHHHHHHHHHHHHcCCCchHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHccEEEEeCCCc--EEEeeccccCCCe
Confidence 66779999999999999999999999999999999999999999999999999999999999953 9999999999999
Q ss_pred eeeCCCCeeEEEeccceeeeccccCC--CCCCchHHHHHHHHHHHHHhhhhcCCceEEEEeeccCCceeEEEEEEeeecC
Q psy13236 81 FYDPRSKQSFKFDHLRIEASDLESWE--PDNSTETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQ 158 (280)
Q Consensus 81 y~DP~~~~~F~~Dhl~~~~~d~e~~~--~~~~~e~~R~al~~~l~~Yv~~hyp~g~~~Vy~~~~~~~~~l~i~I~~~k~n 158 (280)
||||+++++|+|||++++|+|++|++ ++..+|+||.+|+++|.+||++|||+|+|+|||++.++...|+|||+|++||
T Consensus 79 y~Dp~~k~sF~~DHl~~~a~d~~~~~~~~~~~~e~~R~al~~~l~~Yv~~hYp~g~~~Vy~~~~~~~~~l~i~I~~~k~n 158 (281)
T 4akr_A 79 YLDPKNKQVITYDHIKQEVTGERSASGEIEQDIEQYRAAFDEEATKYCNEYYPNGVSAVYGTKVSEGIKITVCISTCIYK 158 (281)
T ss_dssp EEEGGGTEEEEEETTTTEEEEEEECSSCSCGGGHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred EEccCCCeEEEEeccCCEEcCcccccccCccchHHHHHHHHHHHHHHHHhhCCCCcEEEecccCCCCcEEEEEEEeCccC
Confidence 99999999999999999999999998 7777999999999999999999999999999999877666899999999999
Q ss_pred CCCccceeEEEEEEEEecCCceEEE--EEEEEeEEEEeeceEEEEeeeeeeeceeecCchhhHHHHHHHHHHHHHHHHHH
Q psy13236 159 PKNYWNGRWRSYWTINIEGNNVEVK--GNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQA 236 (280)
Q Consensus 159 p~NfwnG~WrS~w~~~~~~~~~~l~--G~I~v~vHYyEdGNVqL~~~k~~~~~~~~~~~~~~a~~iv~~I~~~E~~~q~~ 236 (280)
|+|||||||||+|+|++++.+++|+ |+|+|+|||||||||||+++|+++.+++++++.++|++||+.|+++|++||++
T Consensus 159 p~NFwnGrWrS~w~~~~~~~~~~l~~~G~I~V~vHYyEDGNVqL~s~k~~~~s~~~~~~~~~a~~iv~~I~~~E~~~q~~ 238 (281)
T 4akr_A 159 PNAFYSGRWRSVWTCTFKPGSGNVTSNGKVQVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELNLHTA 238 (281)
T ss_dssp GGGTEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEECCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCceEEEEEEEecCCCCeEEECCEEEEEEEEeecceEEEEeccccccccccCCchhhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999866567888 99999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHhhhhhcCCCCCccccccceeeeeecccccC
Q psy13236 237 ISENYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKN 279 (280)
Q Consensus 237 L~~~~~~lse~~FK~LRR~LPVTR~KidW~ki~~yrlg~d~~~ 279 (280)
|+++|++||+++||+||||||||||||||+||++||||+|+++
T Consensus 239 l~~~~~~ls~~tfK~LRR~LPvTRtKidW~ki~~yrlg~d~~~ 281 (281)
T 4akr_A 239 LDNNYSTMGDTTFKALRRALPINRTKINWQKVKNFKIANELNK 281 (281)
T ss_dssp HHHHHHHHHHTTTTTTSCSSCTTSCCCCTTCC-----------
T ss_pred HHHHHHHhCHHHHHHhhccCCCCCCcccccccccchhhhhhcC
Confidence 9999999999999999999999999999999999999999964
|
| >3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A | Back alignment and structure |
|---|
| >3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B | Back alignment and structure |
|---|
| >3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B 1izn_B | Back alignment and structure |
|---|
| >4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A {Dictyostelium discoideum} | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 280 | ||||
| d1izna_ | 275 | e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallu | 1e-134 |
| >d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]} Length = 275 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Subunits of heterodimeric actin filament capping protein Capz superfamily: Subunits of heterodimeric actin filament capping protein Capz family: Capz alpha-1 subunit domain: Capz alpha-1 subunit species: Chicken (Gallus gallus) [TaxId: 9031]
Score = 377 bits (971), Expect = e-134
Identities = 167/274 (60%), Positives = 202/274 (73%)
Query: 2 LTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKL 61
++D+EKVR+ + FI H+PPGEFNEVFNDVR LLNND LL++ + AF QYN +Q TPVK+
Sbjct: 2 VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKI 61
Query: 62 NNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELE 121
D VLI+EH DLGNGRF DPR+K SFKFDHLR EASD + + +++ + WR +
Sbjct: 62 EGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSA 121
Query: 122 LDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVE 181
L Y HY NG +V+ K I ACIE HQFQPKN+WNGRWRS W I +
Sbjct: 122 LRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQ 181
Query: 182 VKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENY 241
V LK+QVHYYEDGNVQLVS KDI+++V V+S+ QTA+E +K+IE +E YQ AISENY
Sbjct: 182 VAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENY 241
Query: 242 MTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGK 275
TMSDTTFKALRRQLPVTR KIDWNKI+SY IGK
Sbjct: 242 QTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 275
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 280 | |||
| d1izna_ | 275 | Capz alpha-1 subunit {Chicken (Gallus gallus) [Tax | 100.0 | |
| d1iznb_ | 270 | Capz beta-1 subunit {Chicken (Gallus gallus) [TaxI | 98.38 |
| >d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: Subunits of heterodimeric actin filament capping protein Capz superfamily: Subunits of heterodimeric actin filament capping protein Capz family: Capz alpha-1 subunit domain: Capz alpha-1 subunit species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=100.00 E-value=1.4e-107 Score=748.23 Aligned_cols=275 Identities=61% Similarity=0.985 Sum_probs=268.4
Q ss_pred CCChHHHHHHHHHhhhcCCCCChHHHHHHHhhccCCCccchhHHHHHHHHHhhhcceeEEeCCCCCCeEEccccccCCCe
Q psy13236 1 MLTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGR 80 (280)
Q Consensus 1 ~~s~~ek~~ii~~fi~~aPPGE~~~V~~Dl~~l~~~d~~~~~~~~~a~~~yn~~~~~~v~~~~~~~~viis~~n~l~~~~ 80 (280)
.||++||++||++||++||||||++|++|||.|++|+.++++++++||++||++||+||++||.+++||||+||+++++|
T Consensus 1 ~~s~~ek~~i~~~fi~~aPPGE~~~V~~Dl~~l~~d~~~~~~~~~~a~~~yN~~q~~~v~l~g~~~~viis~~n~l~~~r 80 (275)
T d1izna_ 1 RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGR 80 (275)
T ss_dssp CCCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTTEEECCTTSSCCEEECSTTBCSSSE
T ss_pred CCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCchHHHhhHHHHHHHHHHHheEEEEcCCCCccEEEEeccccCCCE
Confidence 38999999999999999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred eeeCCCCeeEEEeccceeeeccccCCCCCCchHHHHHHHHHHHHHhhhhcCCceEEEEeeccCCceeEEEEEEeeecCCC
Q psy13236 81 FYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPK 160 (280)
Q Consensus 81 y~DP~~~~~F~~Dhl~~~~~d~e~~~~~~~~e~~R~al~~~l~~Yv~~hyp~g~~~Vy~~~~~~~~~l~i~I~~~k~np~ 160 (280)
||||+++++|+|||++++|+|+||++.+..+|+||++|+++|.+|+++|||+|+|+||+++.++...|+|||++++|||+
T Consensus 81 y~Dp~~k~sF~~DHl~~~~sd~e~~~~~~~~e~~r~al~~~L~~Yv~~hYp~g~~~vy~~~~~~~~~l~i~I~~~~~~p~ 160 (275)
T d1izna_ 81 FLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPK 160 (275)
T ss_dssp EECTTTCEEEECCSSSSCCCCCEECCCCCSSHHHHHHHHHHHHHHHHHHCTTEEEEEEEEEETTEEEEEEEEEEEEEEGG
T ss_pred EEccCcceEEEEEcccCeEccCccCCCcchhHHHHHHHHHHHHHHHHHhCCCCceEEEccCCCCCceEEEEEEeCcCCcc
Confidence 99999999999999999999999999988899999999999999999999999999999887887889999999999999
Q ss_pred CccceeEEEEEEEEecCCceEEEEEEEEeEEEEeeceEEEEeeeeeeeceeecCchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13236 161 NYWNGRWRSYWTINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISEN 240 (280)
Q Consensus 161 NfwnG~WrS~w~~~~~~~~~~l~G~I~v~vHYyEdGNVqL~~~k~~~~~~~~~~~~~~a~~iv~~I~~~E~~~q~~L~~~ 240 (280)
|||||||||+|+|++++.+++|+|+|+|+|||||||||||+++|+++.++.++++.++|++||+.|+++|++||.+|+++
T Consensus 161 NFwnG~WrS~w~~~~~~~~~~l~G~i~v~vHYyEdGNVqL~s~k~~~~s~~~~~~~~~A~~iv~~I~~~E~~~q~~l~e~ 240 (275)
T d1izna_ 161 NFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISEN 240 (275)
T ss_dssp GTEEEEEEEEEEEECCSSEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEECCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCceeEEEEEEEccCCCcEEEEEEEEEEEEEecCeEEEEEccccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999987678999999999999999999999999999999999988899999999999999999999999
Q ss_pred HhcCChHHHhhhhhcCCCCCccccccceeeeeecc
Q psy13236 241 YMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGK 275 (280)
Q Consensus 241 ~~~lse~~FK~LRR~LPVTR~KidW~ki~~yrlg~ 275 (280)
|++||+++||+||||||||||||||+||++||||+
T Consensus 241 f~~ls~~~FK~LRR~LPVTR~KidW~ki~~yrlgk 275 (275)
T d1izna_ 241 YQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 275 (275)
T ss_dssp HHHHHHTHHHHHSCSSCTTSSCCCHHHHTTCCSCC
T ss_pred HHHhCHHHHHHHHhhCCcCCcccchhhhcccccCC
Confidence 99999999999999999999999999999999997
|
| >d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|