Psyllid ID: psy13236


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280
MLTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKNQ
cccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHccEEEEcccccccEEEccccccccccEEcccccEEEEEEccccEEccccccccccccHHHHHHHHHHHHHHHccccccccEEEEEEEccccEEEEEEEEEcccccccccccEEEEEEEEEEcccEEEEEEEEEEEEEEEEEcEEEEEEEEccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHccccccccccccccccccccccccccccc
cccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccEEEccccccccEEEccccEccccEEEcccccEEEEcccccccccccEEcccccccHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEccEEEEEEEEEEEEEEHHHcEEEEEEEEEEEEccccEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccccccccHHHHcccccccHHccc
mltdqekvRVVSGFilhsppgefneVFNDVRGllnndvllkdDVSKAFVQYNKeqltpvklnnsdlpvlisehndlgngrfydprskqsfkfdhlrieasdleswepdnstETWRSLIELELDTYTashykngtssvfakkqgetlqinaciedhqfqpknywngrwrSYWTINiegnnvevkgNLKVQVHYYedgnvqlvsskDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENYMTMSDTTFKALRRQlpvtrmkidwNKIVSYSIGKELKNQ
mltdqekvrvvsgfilhsppgefNEVFNDVRGLLNNDVLLKDDVSKAFVQYnkeqltpvklnnsdLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEasdleswepdnstETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVEVKGNLKVQVHYYEDgnvqlvsskdiketvvvtseeqtarEIVKLIEESETAYQQAISENYMTMSDTTFKALRRQlpvtrmkidwnkivsysigkelknq
MLTDQEKVRVVSGFILHSPPGEFNEVFNDVRGllnndvllkddvSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKNQ
********RVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGRFY*******FKFDHLRIE************TETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSI*******
******KVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDL**WE***STETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKE*V***S*EQTAREIVKLIEESETAYQQAISENYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGK*****
MLTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLE*********TWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKNQ
*LTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGK*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MLTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKNQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query280 2.2.26 [Sep-21-2011]
Q9W2N0286 F-actin-capping protein s yes N/A 0.996 0.975 0.676 1e-115
Q2QLH5286 F-actin-capping protein s N/A N/A 0.992 0.972 0.604 7e-96
Q09YJ9286 F-actin-capping protein s N/A N/A 0.992 0.972 0.604 8e-96
Q5E997286 F-actin-capping protein s yes N/A 0.992 0.972 0.604 8e-96
Q2QL88286 F-actin-capping protein s N/A N/A 0.992 0.972 0.604 8e-96
Q00PJ7286 F-actin-capping protein s N/A N/A 0.992 0.972 0.600 8e-96
P28497286 F-actin-capping protein s yes N/A 0.992 0.972 0.604 9e-96
A1X151286 F-actin-capping protein s N/A N/A 0.992 0.972 0.600 1e-95
Q2QLA8286 F-actin-capping protein s yes N/A 0.992 0.972 0.600 1e-95
Q07E47286 F-actin-capping protein s N/A N/A 0.992 0.972 0.604 2e-95
>sp|Q9W2N0|CAPZA_DROME F-actin-capping protein subunit alpha OS=Drosophila melanogaster GN=cpa PE=2 SV=1 Back     alignment and function desciption
 Score =  413 bits (1062), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 190/281 (67%), Positives = 229/281 (81%), Gaps = 2/281 (0%)

Query: 2   LTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKL 61
           +TD EKVR+VS FILH+PPGEFNEVFNDVR LL ND LLKD  S AF QYNK+QLTPV++
Sbjct: 6   ITDAEKVRIVSDFILHAPPGEFNEVFNDVRELLKNDTLLKDGASHAFAQYNKDQLTPVRI 65

Query: 62  NNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELE 121
             +D   +ISEHNDLGNGRFYDPR+KQ+FK+DHLR EASD +  E D + E WR+ ++LE
Sbjct: 66  EGTDHNAIISEHNDLGNGRFYDPRTKQAFKYDHLRKEASDYQDVEADATAEPWRAALDLE 125

Query: 122 LDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNN-- 179
              YTASHY++G SSVF K QG  + +  CIEDHQFQPKNYWNGRWRS W +  +  +  
Sbjct: 126 TLAYTASHYRHGVSSVFGKAQGNQITLTICIEDHQFQPKNYWNGRWRSQWHVTFQAGSGT 185

Query: 180 VEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISE 239
            E+KG LKVQVHYYEDGNVQLVSSK+ +E+VVV++E+Q A+E+++LIE++E  YQ AISE
Sbjct: 186 AELKGVLKVQVHYYEDGNVQLVSSKECRESVVVSNEQQVAKEVIRLIEDAENEYQLAISE 245

Query: 240 NYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKNQ 280
           NY TMSDTTFKA+RRQLP+TR KIDW+KIVSYSIGKELK Q
Sbjct: 246 NYQTMSDTTFKAMRRQLPITRTKIDWSKIVSYSIGKELKTQ 286




F-actin-capping proteins bind in a Ca(2+)-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike other capping proteins (such as gelsolin and severin), these proteins do not sever actin filaments.
Drosophila melanogaster (taxid: 7227)
>sp|Q2QLH5|CAZA2_OTOGA F-actin-capping protein subunit alpha-2 OS=Otolemur garnettii GN=CAPZA2 PE=3 SV=3 Back     alignment and function description
>sp|Q09YJ9|CAZA2_MUNMU F-actin-capping protein subunit alpha-2 OS=Muntiacus muntjak GN=CAPZA2 PE=3 SV=3 Back     alignment and function description
>sp|Q5E997|CAZA2_BOVIN F-actin-capping protein subunit alpha-2 OS=Bos taurus GN=CAPZA2 PE=1 SV=3 Back     alignment and function description
>sp|Q2QL88|CAZA2_MICMU F-actin-capping protein subunit alpha-2 OS=Microcebus murinus GN=CAPZA2 PE=3 SV=3 Back     alignment and function description
>sp|Q00PJ7|CAZA2_ATEAB F-actin-capping protein subunit alpha-2 OS=Atelerix albiventris GN=CAPZA2 PE=3 SV=1 Back     alignment and function description
>sp|P28497|CAZA2_CHICK F-actin-capping protein subunit alpha-2 OS=Gallus gallus GN=CAPZA2 PE=1 SV=1 Back     alignment and function description
>sp|A1X151|CAZA2_ECHTE F-actin-capping protein subunit alpha-2 OS=Echinops telfairi GN=CAPZA2 PE=3 SV=1 Back     alignment and function description
>sp|Q2QLA8|CAZA2_HORSE F-actin-capping protein subunit alpha-2 OS=Equus caballus GN=CAPZA2 PE=3 SV=3 Back     alignment and function description
>sp|Q07E47|CAZA2_DASNO F-actin-capping protein subunit alpha-2 OS=Dasypus novemcinctus GN=CAPZA2 PE=3 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
66508517288 PREDICTED: f-actin-capping protein subun 1.0 0.972 0.695 1e-115
350418891288 PREDICTED: F-actin-capping protein subun 1.0 0.972 0.691 1e-115
340713972288 PREDICTED: f-actin-capping protein subun 1.0 0.972 0.691 1e-115
383849439288 PREDICTED: F-actin-capping protein subun 1.0 0.972 0.691 1e-114
322795636289 hypothetical protein SINV_02451 [Solenop 1.0 0.968 0.691 1e-114
307168127289 F-actin-capping protein subunit alpha [C 0.996 0.965 0.690 1e-113
194881768286 GG22079 [Drosophila erecta] gi|190658180 0.996 0.975 0.676 1e-113
19922662286 capping protein alpha [Drosophila melano 0.996 0.975 0.676 1e-113
195486662286 GE12160 [Drosophila yakuba] gi|194177701 0.996 0.975 0.672 1e-113
194754779286 GF11927 [Drosophila ananassae] gi|190620 0.996 0.975 0.679 1e-112
>gi|66508517|ref|XP_624862.1| PREDICTED: f-actin-capping protein subunit alpha-like isoform 2 [Apis mellifera] gi|328781655|ref|XP_003250011.1| PREDICTED: f-actin-capping protein subunit alpha-like isoform 1 [Apis mellifera] gi|380025038|ref|XP_003696288.1| PREDICTED: F-actin-capping protein subunit alpha-like [Apis florea] Back     alignment and taxonomy information
 Score =  421 bits (1083), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 196/282 (69%), Positives = 233/282 (82%), Gaps = 2/282 (0%)

Query: 1   MLTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVK 60
           ++ DQEKVR+VS FILHSPPGEFNEVFNDVR LLNND LLK+  S AF QYNK+QLTPVK
Sbjct: 7   VIPDQEKVRIVSDFILHSPPGEFNEVFNDVRVLLNNDNLLKEGASGAFAQYNKDQLTPVK 66

Query: 61  LNNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIEL 120
           +  S+ P LI+EHNDLG  RFYD RSKQSFK+DHLR EA D E +EPD+  E WRS ++ 
Sbjct: 67  IEGSEYPALITEHNDLGGQRFYDARSKQSFKYDHLRKEAQDYEPYEPDSVAEPWRSALQD 126

Query: 121 ELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINI--EGN 178
           E+ TYT SHY++G  SVF K QG  + + ACIEDHQFQPKN+WNGRWRS WT++      
Sbjct: 127 EITTYTQSHYRHGACSVFGKSQGGNITLTACIEDHQFQPKNFWNGRWRSVWTVSFSPSSG 186

Query: 179 NVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAIS 238
           N E++G+LKVQVHYYEDGNVQLVSSK++KE++ ++SE+QTA+E+++L+EESE  YQ AIS
Sbjct: 187 NAELRGSLKVQVHYYEDGNVQLVSSKEVKESLPISSEKQTAKELIRLVEESENDYQTAIS 246

Query: 239 ENYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKNQ 280
           ENY TMSDTTFKALRRQLPV R KIDWNKIVSYSIGKELK+Q
Sbjct: 247 ENYQTMSDTTFKALRRQLPVMRTKIDWNKIVSYSIGKELKSQ 288




Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350418891|ref|XP_003492002.1| PREDICTED: F-actin-capping protein subunit alpha-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|340713972|ref|XP_003395507.1| PREDICTED: f-actin-capping protein subunit alpha-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383849439|ref|XP_003700352.1| PREDICTED: F-actin-capping protein subunit alpha-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|322795636|gb|EFZ18315.1| hypothetical protein SINV_02451 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307168127|gb|EFN61406.1| F-actin-capping protein subunit alpha [Camponotus floridanus] Back     alignment and taxonomy information
>gi|194881768|ref|XP_001974993.1| GG22079 [Drosophila erecta] gi|190658180|gb|EDV55393.1| GG22079 [Drosophila erecta] Back     alignment and taxonomy information
>gi|19922662|ref|NP_611539.1| capping protein alpha [Drosophila melanogaster] gi|195346281|ref|XP_002039694.1| GM15798 [Drosophila sechellia] gi|195585280|ref|XP_002082417.1| GD11558 [Drosophila simulans] gi|11131875|sp|Q9W2N0.1|CAPZA_DROME RecName: Full=F-actin-capping protein subunit alpha gi|7291228|gb|AAF46660.1| capping protein alpha [Drosophila melanogaster] gi|17861504|gb|AAL39229.1| GH10050p [Drosophila melanogaster] gi|194135043|gb|EDW56559.1| GM15798 [Drosophila sechellia] gi|194194426|gb|EDX08002.1| GD11558 [Drosophila simulans] gi|220945024|gb|ACL85055.1| cpa-PA [synthetic construct] gi|220954928|gb|ACL90007.1| cpa-PA [synthetic construct] Back     alignment and taxonomy information
>gi|195486662|ref|XP_002091600.1| GE12160 [Drosophila yakuba] gi|194177701|gb|EDW91312.1| GE12160 [Drosophila yakuba] Back     alignment and taxonomy information
>gi|194754779|ref|XP_001959672.1| GF11927 [Drosophila ananassae] gi|190620970|gb|EDV36494.1| GF11927 [Drosophila ananassae] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query280
FB|FBgn0034577286 cpa "capping protein alpha" [D 0.996 0.975 0.647 1.5e-99
UNIPROTKB|P28497286 CAPZA2 "F-actin-capping protei 0.992 0.972 0.579 6e-87
UNIPROTKB|Q5E997286 CAPZA2 "F-actin-capping protei 0.992 0.972 0.579 6e-87
UNIPROTKB|F1NFP1286 CAPZA2 "F-actin-capping protei 0.992 0.972 0.575 1.6e-86
UNIPROTKB|A0M8V0286 CAPZA2 "F-actin-capping protei 0.992 0.972 0.575 1.6e-86
UNIPROTKB|Q29221286 CAPZA2 "F-actin-capping protei 0.992 0.972 0.575 1.6e-86
MGI|MGI:106222286 Capza2 "capping protein (actin 0.992 0.972 0.571 2e-86
RGD|1549770286 Capza2 "capping protein (actin 0.992 0.972 0.571 2e-86
UNIPROTKB|P47755286 CAPZA2 "F-actin-capping protei 0.992 0.972 0.575 5.4e-86
UNIPROTKB|A4FUA8286 CAPZA1 "F-actin-capping protei 0.992 0.972 0.582 1.1e-85
FB|FBgn0034577 cpa "capping protein alpha" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 988 (352.9 bits), Expect = 1.5e-99, P = 1.5e-99
 Identities = 182/281 (64%), Positives = 221/281 (78%)

Query:     2 LTDQEKVRVVSGFILHSPPGEFNEVFNDVRGXXXXXXXXXXXXSKAFVQYNKEQLTPVKL 61
             +TD EKVR+VS FILH+PPGEFNEVFNDVR             S AF QYNK+QLTPV++
Sbjct:     6 ITDAEKVRIVSDFILHAPPGEFNEVFNDVRELLKNDTLLKDGASHAFAQYNKDQLTPVRI 65

Query:    62 NNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELE 121
               +D   +ISEHNDLGNGRFYDPR+KQ+FK+DHLR EASD +  E D + E WR+ ++LE
Sbjct:    66 EGTDHNAIISEHNDLGNGRFYDPRTKQAFKYDHLRKEASDYQDVEADATAEPWRAALDLE 125

Query:   122 LDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNN-- 179
                YTASHY++G SSVF K QG  + +  CIEDHQFQPKNYWNGRWRS W +  +  +  
Sbjct:   126 TLAYTASHYRHGVSSVFGKAQGNQITLTICIEDHQFQPKNYWNGRWRSQWHVTFQAGSGT 185

Query:   180 VEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISE 239
              E+KG LKVQVHYYEDGNVQLVSSK+ +E+VVV++E+Q A+E+++LIE++E  YQ AISE
Sbjct:   186 AELKGVLKVQVHYYEDGNVQLVSSKECRESVVVSNEQQVAKEVIRLIEDAENEYQLAISE 245

Query:   240 NYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKNQ 280
             NY TMSDTTFKA+RRQLP+TR KIDW+KIVSYSIGKELK Q
Sbjct:   246 NYQTMSDTTFKAMRRQLPITRTKIDWSKIVSYSIGKELKTQ 286




GO:0051016 "barbed-end actin filament capping" evidence=ISS;NAS
GO:0008290 "F-actin capping protein complex" evidence=IEA;NAS
GO:0030036 "actin cytoskeleton organization" evidence=IMP;NAS
GO:0005869 "dynactin complex" evidence=ISS
GO:0007018 "microtubule-based movement" evidence=ISS
GO:0007015 "actin filament organization" evidence=IMP
GO:0003779 "actin binding" evidence=IEA
GO:0006911 "phagocytosis, engulfment" evidence=IMP
GO:0010591 "regulation of lamellipodium assembly" evidence=IMP
GO:0030837 "negative regulation of actin filament polymerization" evidence=IMP
GO:0035220 "wing disc development" evidence=IMP
GO:0016324 "apical plasma membrane" evidence=IDA
GO:0005875 "microtubule associated complex" evidence=IDA
GO:0007294 "germarium-derived oocyte fate determination" evidence=IMP
GO:0000902 "cell morphogenesis" evidence=IMP
GO:0051490 "negative regulation of filopodium assembly" evidence=IMP
UNIPROTKB|P28497 CAPZA2 "F-actin-capping protein subunit alpha-2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q5E997 CAPZA2 "F-actin-capping protein subunit alpha-2" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NFP1 CAPZA2 "F-actin-capping protein subunit alpha-2" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|A0M8V0 CAPZA2 "F-actin-capping protein subunit alpha-2" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q29221 CAPZA2 "F-actin-capping protein subunit alpha-2" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:106222 Capza2 "capping protein (actin filament) muscle Z-line, alpha 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1549770 Capza2 "capping protein (actin filament) muscle Z-line, alpha 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P47755 CAPZA2 "F-actin-capping protein subunit alpha-2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|A4FUA8 CAPZA1 "F-actin-capping protein subunit alpha-1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q00PJ7CAZA2_ATEABNo assigned EC number0.60070.99280.9720N/AN/A
P47753CAZA1_MOUSENo assigned EC number0.60430.99280.9720noN/A
Q2IBE7CAZA2_GORGONo assigned EC number0.60070.99280.9720N/AN/A
Q07DZ0CAZA2_COLGUNo assigned EC number0.60070.99280.9720N/AN/A
P47755CAZA2_HUMANNo assigned EC number0.60070.99280.9720yesN/A
P47754CAZA2_MOUSENo assigned EC number0.59710.99280.9720yesN/A
P28497CAZA2_CHICKNo assigned EC number0.60430.99280.9720yesN/A
Q2QLG4CAZA2_CALJANo assigned EC number0.60070.99280.9720yesN/A
P13127CAZA1_CHICKNo assigned EC number0.60790.99280.9720noN/A
Q2IBA7CAZA2_CHLAENo assigned EC number0.60070.99280.9720N/AN/A
Q07E00CAZA2_ORNANNo assigned EC number0.60070.99280.9720yesN/A
Q5R4P6CAZA2_PONABNo assigned EC number0.60070.99280.9720yesN/A
Q5E997CAZA2_BOVINNo assigned EC number0.60430.99280.9720yesN/A
Q07E23CAZA2_MUSPFNo assigned EC number0.60070.99280.9720N/AN/A
A1X151CAZA2_ECHTENo assigned EC number0.60070.99280.9720N/AN/A
Q108U5CAZA2_LOXAFNo assigned EC number0.60070.99280.9720yesN/A
A0M8R8CAZA2_PAPANNo assigned EC number0.60070.99280.9720N/AN/A
P25229CAZA1_XENLANo assigned EC number0.59600.91070.9960N/AN/A
Q9W2N0CAPZA_DROMENo assigned EC number0.67610.99640.9755yesN/A
Q07E47CAZA2_DASNONo assigned EC number0.60430.99280.9720N/AN/A
Q4R959CAZA1_MACFANo assigned EC number0.60070.99280.9720N/AN/A
A4D7S9CAZA2_MACEUNo assigned EC number0.60070.99280.9720N/AN/A
A4D7Q3CAZA2_ARTJANo assigned EC number0.59710.99280.9720N/AN/A
Q09YL0CAZA2_ATEGENo assigned EC number0.60070.99280.9720N/AN/A
Q09YH6CAZA2_SAIBBNo assigned EC number0.60070.99280.9720N/AN/A
A0M8V0CAZA2_CANFANo assigned EC number0.60070.99280.9720yesN/A
Q2QLB9CAZA2_CALMONo assigned EC number0.60430.99280.9720N/AN/A
Q2QL88CAZA2_MICMUNo assigned EC number0.60430.99280.9720N/AN/A
Q2IBB9CAZA2_RHIFENo assigned EC number0.59710.99280.9720N/AN/A
Q2QL78CAZA2_DIDVINo assigned EC number0.59710.99280.9720N/AN/A
Q2QLH5CAZA2_OTOGANo assigned EC number0.60430.99280.9720N/AN/A
Q4R5G1CAZA2_MACFANo assigned EC number0.60070.99280.9720N/AN/A
Q29221CAZA2_PIGNo assigned EC number0.60070.99280.9720yesN/A
Q2QLD1CAZA2_CARPSNo assigned EC number0.59710.99280.9720N/AN/A
Q09YJ9CAZA2_MUNMUNo assigned EC number0.60430.99280.9720N/AN/A
Q09YN4CAZA2_RABITNo assigned EC number0.60070.99280.9720yesN/A
Q2QLF0CAZA2_PANTRNo assigned EC number0.60070.99280.9720yesN/A
Q5NVM0CAZA1_PONABNo assigned EC number0.60430.99280.9720noN/A
P34685CAPZA_CAEELNo assigned EC number0.54410.9750.9680yesN/A
Q07E36CAZA2_NEONENo assigned EC number0.60070.99280.9720N/AN/A
Q07DY0CAZA2_NOMLENo assigned EC number0.60070.99280.9720yesN/A
A4FUA8CAZA1_BOVINNo assigned EC number0.60790.99280.9720noN/A
A0M8S9CAZA2_FELCANo assigned EC number0.60070.99280.9720N/AN/A
B2GUZ5CAZA1_RATNo assigned EC number0.61150.99280.9720noN/A
Q2QLA8CAZA2_HORSENo assigned EC number0.60070.99280.9720yesN/A
Q07DV7CAZA2_AOTNANo assigned EC number0.60070.99280.9720N/AN/A
Q3T1K5CAZA2_RATNo assigned EC number0.59710.99280.9720yesN/A
Q2QL99CAZA2_MONDONo assigned EC number0.59710.99280.9720yesN/A
P52907CAZA1_HUMANNo assigned EC number0.60790.99280.9720noN/A
P13022CAPZA_DICDINo assigned EC number0.36650.98210.9786yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
pfam01267269 pfam01267, F-actin_cap_A, F-actin capping protein 1e-124
>gnl|CDD|216401 pfam01267, F-actin_cap_A, F-actin capping protein alpha subunit Back     alignment and domain information
 Score =  353 bits (908), Expect = e-124
 Identities = 138/272 (50%), Positives = 192/272 (70%), Gaps = 4/272 (1%)

Query: 6   EKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSD 65
           EK+ ++S FI ++PPGE N+V  D+R LL +D L+K  +++A  QYN+EQL PVKL  S+
Sbjct: 1   EKIEIISSFIKNAPPGELNDVVADLRALLGDDPLIKSTIAEALEQYNEEQLVPVKLPGSE 60

Query: 66  LPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWE-PDNSTETWRSLIELELDT 124
             V+ISE+N LG  R++DP SK+SF  DHL+ +ASD+ES+E      E +R  ++  L  
Sbjct: 61  -KVIISEYNKLGGNRYFDPVSKKSFTVDHLKQKASDVESYELESEELELYRKSLDKALSA 119

Query: 125 YTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVEVKG 184
           Y   HY NG   V+ K +G+  ++   I  H++ PKN+WNGRWRS WT++   +   +KG
Sbjct: 120 YVKDHYPNGACGVYPKSEGDK-ELAIIIVSHKYNPKNFWNGRWRSEWTLD-SSSTGSLKG 177

Query: 185 NLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENYMTM 244
            +KV VHYYEDGNVQL SSKD +ETV V++++ TA  IVK I E+E  YQ A++EN+ T+
Sbjct: 178 KIKVDVHYYEDGNVQLKSSKDFEETVSVSNDDATASSIVKAIREAENEYQAALNENFNTL 237

Query: 245 SDTTFKALRRQLPVTRMKIDWNKIVSYSIGKE 276
           +DTTFKALRRQLPVTR KI+W KI +Y +GK+
Sbjct: 238 NDTTFKALRRQLPVTRQKINWGKIGNYRLGKD 269


Length = 269

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 280
PF01267271 F-actin_cap_A: F-actin capping protein alpha subun 100.0
KOG0836|consensus282 100.0
PF01115242 F_actin_cap_B: F-actin capping protein, beta subun 98.31
KOG3174|consensus275 96.96
>PF01267 F-actin_cap_A: F-actin capping protein alpha subunit; InterPro: IPR002189 This entry represents a component of the WASH complex Back     alignment and domain information
Probab=100.00  E-value=2.3e-104  Score=730.40  Aligned_cols=270  Identities=53%  Similarity=0.950  Sum_probs=242.2

Q ss_pred             HHHHHHHHhhhcCCCCChHHHHHHHhhccCCCccchhHHHHHHHHHhhhcceeEEeCCCCCCeEEccccccCCCeeeeCC
Q psy13236          6 EKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGRFYDPR   85 (280)
Q Consensus         6 ek~~ii~~fi~~aPPGE~~~V~~Dl~~l~~~d~~~~~~~~~a~~~yn~~~~~~v~~~~~~~~viis~~n~l~~~~y~DP~   85 (280)
                      ||++||++||++||||||++|++|||.|++||.++++.+++||++||++||+||++||.+++||||+||+++++||+||+
T Consensus         1 ek~~ii~~fl~~aPPGE~~~V~~Dlr~l~~dd~~~~~~i~~a~~~yn~~q~~~v~~~~~~~~viis~~n~~~~~ry~Dp~   80 (271)
T PF01267_consen    1 EKVEIISSFLLQAPPGEFNEVFNDLRTLLGDDSLLKEGIAEAFEQYNEEQFIPVKLPGSDHKVIISKYNKLGGNRYFDPR   80 (271)
T ss_dssp             HHHHHHHHHHHT--TT-HHHHHHHHHHHHT-HHHHHHHSHHHHHHHHHHTTEEE--TTSSS-EEE-GGGBESTTEEEETT
T ss_pred             CHHHHHHHHHHcCCCccHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHCcEEEEeCCCCcceEEecccccCCCeEEEec
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeeEEEeccceeeeccccCCC-CCCchHHHHHHHHHHHHHhhhhcCCceEEEEeeccCCceeEEEEEEeeecCCCCccc
Q psy13236         86 SKQSFKFDHLRIEASDLESWEP-DNSTETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWN  164 (280)
Q Consensus        86 ~~~~F~~Dhl~~~~~d~e~~~~-~~~~e~~R~al~~~l~~Yv~~hyp~g~~~Vy~~~~~~~~~l~i~I~~~k~np~Nfwn  164 (280)
                      ++++|+|||++++|+|++|++. ++.+|.+|.+|+++|++|+++|||+|+|+||+.+++++..|+|||+|++|||+||||
T Consensus        81 ~~~~F~~DHl~~~~~d~e~~~~~~~~~e~~R~~l~~~l~~Yv~~hy~~g~~~V~~~~~~~~~~l~i~I~~~k~n~~Nfwn  160 (271)
T PF01267_consen   81 SKKSFSVDHLKQKASDVEPYEPPDEELESYRDALDKALEKYVKEHYPSGACGVYPKSEEDKETLVICIVAHKYNPKNFWN  160 (271)
T ss_dssp             TTEEEEEETTTTEEEEEEE-----TSSHHHHHHHHHHHHHHHHHHSTTEEEEEEEEEETTEEEEEEEEEEEEEEGGGTEE
T ss_pred             cCcEEEEeeeccEEccCccccccccchHHHHHHHHHHHHHHHHHhccCceeEEEeccCCCccEEEEEEEecccccccccC
Confidence            9999999999999999999983 457999999999999999999999999999999887766799999999999999999


Q ss_pred             eeEEEEEEEEecCCceEEEEEEEEeEEEEeeceEEEEeeeeeeeceeecCchhhHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy13236        165 GRWRSYWTINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENYMTM  244 (280)
Q Consensus       165 G~WrS~w~~~~~~~~~~l~G~I~v~vHYyEdGNVqL~~~k~~~~~~~~~~~~~~a~~iv~~I~~~E~~~q~~L~~~~~~l  244 (280)
                      |||||+|+|++.+ .++|+|+|+|+|||||||||||+++|++..++.++++.++|++||++|+++|++||++|+++|++|
T Consensus       161 G~WrS~w~~~~~~-~~~l~G~I~V~vHYyEdGNVqL~~~k~~~~~~~~~~~~~~a~~iv~~I~~~E~~~q~~L~e~~~~l  239 (271)
T PF01267_consen  161 GRWRSEWTVDFSS-SGTLSGKIKVQVHYYEDGNVQLNSSKEVSETVSVSNDEQFASDIVKAIKEAENKYQTSLNESYNNL  239 (271)
T ss_dssp             EEEEEEEEEEEET-TEEEEEEEEEEEEE-TTEEEEEEEEEEEEEEEE--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeEEEEEecCC-CceEEEEEEeeEEEEeecEEEEEEccccceeeccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999854 369999999999999999999999999999999888889999999999999999999999999999


Q ss_pred             ChHHHhhhhhcCCCCCccccccceeeeeeccc
Q psy13236        245 SDTTFKALRRQLPVTRMKIDWNKIVSYSIGKE  276 (280)
Q Consensus       245 se~~FK~LRR~LPVTR~KidW~ki~~yrlg~d  276 (280)
                      |+++||+|||+||||||||||+||++||||+|
T Consensus       240 s~~tFK~LRR~LPVTRsKi~W~ki~~yrlg~d  271 (271)
T PF01267_consen  240 SEKTFKALRRQLPVTRSKINWNKIGNYRLGKD  271 (271)
T ss_dssp             HHTHHHHHS-SS-TTTSS-SHHHHHTTTS---
T ss_pred             hHHHHHHhhhhCCCCCCcccccccccEEecCC
Confidence            99999999999999999999999999999997



The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. The actin filament system, a prominent part of the cytoskeleton in eukaryotic cells, is both a static structure and a dynamic network that can undergo rearrangements: it is thought to be involved in processes such as cell movement and phagocytosis [], as well as muscle contraction. The F-actin capping protein binds in a calcium-independent manner to the fast growing ends of actin filaments (barbed end) thereby blocking the exchange of subunits at these ends. Unlike gelsolin and severin this protein does not sever actin filaments. The F-actin capping protein is a heterodimer composed of two unrelated subunits: alpha and beta (see IPR001698 from INTERPRO). Neither of the subunits shows sequence similarity to other filament-capping proteins []. The alpha subunit is a protein of about 268 to 286 amino acid residues whose sequence is well conserved in eukaryotic species [].; GO: 0003779 actin binding, 0030036 actin cytoskeleton organization, 0008290 F-actin capping protein complex; PDB: 1MQ1_D 1MWN_X 2KBM_Y 2KZ7_A 3AAE_C 3AA6_A 3LK4_G 1IZN_A 3AA7_A 3AAA_A ....

>KOG0836|consensus Back     alignment and domain information
>PF01115 F_actin_cap_B: F-actin capping protein, beta subunit; InterPro: IPR001698 This entry represents a component of the WASH complex Back     alignment and domain information
>KOG3174|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
1izn_A286 Crystal Structure Of Actin Filament Capping Protein 4e-94
2kxp_A275 Solution Nmr Structure Of V-1 Bound To Capping Prot 3e-92
4akr_A281 Crystal Structure Of The Cytoplasmic Actin Capping 1e-48
>pdb|1IZN|A Chain A, Crystal Structure Of Actin Filament Capping Protein Capz Length = 286 Back     alignment and structure

Iteration: 1

Score = 340 bits (873), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 162/278 (58%), Positives = 197/278 (70%) Query: 2 LTDQEKVRVVSGFILHSPPGEFNEVFNDVRGXXXXXXXXXXXXSKAFVQYNKEQLTPVKL 61 ++D+EKVR+ + FI H+PPGEFNEVFNDVR + AF QYN +Q TPVK+ Sbjct: 8 VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKI 67 Query: 62 NNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELE 121 D VLI+EH DLGNGRF DPR+K SFKFDHLR EASD + + +++ + WR + Sbjct: 68 EGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSA 127 Query: 122 LDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVE 181 L Y HY NG +V+ K I ACIE HQFQPKN+WNGRWRS W I + Sbjct: 128 LRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQ 187 Query: 182 VKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENY 241 V LK+QVHYYEDGNVQLVS KDI+++V V+S+ QTA+E +K+IE +E YQ AISENY Sbjct: 188 VAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENY 247 Query: 242 MTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKN 279 TMSDTTFKALRRQLPVTR KIDWNKI+SY IGKE++N Sbjct: 248 QTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEMQN 285
>pdb|2KXP|A Chain A, Solution Nmr Structure Of V-1 Bound To Capping Protein (Cp) Length = 275 Back     alignment and structure
>pdb|4AKR|A Chain A, Crystal Structure Of The Cytoplasmic Actin Capping Protein Cap32_34 From Dictyostelium Discoideum Length = 281 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query280
3aa0_A286 F-actin-capping protein subunit alpha-1; actin cap 1e-125
4akr_A281 F-actin-capping protein subunit alpha; actin-bindi 1e-114
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-05
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 2e-04
>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A Length = 286 Back     alignment and structure
 Score =  358 bits (919), Expect = e-125
 Identities = 169/278 (60%), Positives = 206/278 (74%)

Query: 2   LTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKL 61
           ++D+EKVR+ + FI H+PPGEFNEVFNDVR LLNND LL++  + AF QYN +Q TPVK+
Sbjct: 8   VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKI 67

Query: 62  NNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELE 121
              D  VLI+EH DLGNGRF DPR+K SFKFDHLR EASD +  + +++ + WR   +  
Sbjct: 68  EGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSA 127

Query: 122 LDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVE 181
           L  Y   HY NG  +V+ K       I ACIE HQFQPKN+WNGRWRS W   I     +
Sbjct: 128 LRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQ 187

Query: 182 VKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENY 241
           V   LK+QVHYYEDGNVQLVS KDI+++V V+S+ QTA+E +K+IE +E  YQ AISENY
Sbjct: 188 VAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENY 247

Query: 242 MTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKN 279
            TMSDTTFKALRRQLPVTR KIDWNKI+SY IGKE++N
Sbjct: 248 QTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGKEMQN 285


>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum} Length = 281 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
4akr_A281 F-actin-capping protein subunit alpha; actin-bindi 100.0
3aa0_A286 F-actin-capping protein subunit alpha-1; actin cap 100.0
3aa0_B244 F-actin-capping protein subunit beta isoforms 1 A; 98.59
3lk4_B277 F-actin-capping protein subunit beta isoforms 1 an 98.56
4akr_B290 F-actin-capping protein subunit beta; actin-bindin 98.33
>4akr_A F-actin-capping protein subunit alpha; actin-binding protein; 2.20A {Dictyostelium discoideum} Back     alignment and structure
Probab=100.00  E-value=3.6e-108  Score=756.34  Aligned_cols=277  Identities=36%  Similarity=0.676  Sum_probs=255.9

Q ss_pred             CCChHHHHHHHHHhhhcCCCCChHHHHHHHhhccCCCccchhHHHHHHHHHhhhcceeEEeCCCCCCeEEccccccCCCe
Q psy13236          1 MLTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGR   80 (280)
Q Consensus         1 ~~s~~ek~~ii~~fi~~aPPGE~~~V~~Dl~~l~~~d~~~~~~~~~a~~~yn~~~~~~v~~~~~~~~viis~~n~l~~~~   80 (280)
                      |.+.+||++||++||++||||||++|++|||.|++||.++++++++||++||++||+||++||.+  ||||+||+++++|
T Consensus         1 m~~~~ek~~i~~~fl~~aPPGE~~eV~~Dlr~l~~~d~~~~~~~~~a~~~Yn~~q~~~v~~~g~~--viis~~n~l~~~r   78 (281)
T 4akr_A            1 MASNQELVQIATNFLLNAPPCEFMEVVSDVRALLPSESLLNASAGSTFREYNTSQMVSVQTSKGS--ALITKEGEISNNE   78 (281)
T ss_dssp             -CCHHHHHHHHHHHHHTCCTTCHHHHHHHHHTTCSCTTTTTTTHHHHHHHHHHHHTCEEEETTEE--EECCSTTEEETTE
T ss_pred             CCchHHHHHHHHHHHHcCCCchHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHccEEEEeCCCc--EEEeeccccCCCe
Confidence            66779999999999999999999999999999999999999999999999999999999999953  9999999999999


Q ss_pred             eeeCCCCeeEEEeccceeeeccccCC--CCCCchHHHHHHHHHHHHHhhhhcCCceEEEEeeccCCceeEEEEEEeeecC
Q psy13236         81 FYDPRSKQSFKFDHLRIEASDLESWE--PDNSTETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQ  158 (280)
Q Consensus        81 y~DP~~~~~F~~Dhl~~~~~d~e~~~--~~~~~e~~R~al~~~l~~Yv~~hyp~g~~~Vy~~~~~~~~~l~i~I~~~k~n  158 (280)
                      ||||+++++|+|||++++|+|++|++  ++..+|+||.+|+++|.+||++|||+|+|+|||++.++...|+|||+|++||
T Consensus        79 y~Dp~~k~sF~~DHl~~~a~d~~~~~~~~~~~~e~~R~al~~~l~~Yv~~hYp~g~~~Vy~~~~~~~~~l~i~I~~~k~n  158 (281)
T 4akr_A           79 YLDPKNKQVITYDHIKQEVTGERSASGEIEQDIEQYRAAFDEEATKYCNEYYPNGVSAVYGTKVSEGIKITVCISTCIYK  158 (281)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEECSSCSCGGGHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEETTEEEEEEEEEEEEEE
T ss_pred             EEccCCCeEEEEeccCCEEcCcccccccCccchHHHHHHHHHHHHHHHHhhCCCCcEEEecccCCCCcEEEEEEEeCccC
Confidence            99999999999999999999999998  7777999999999999999999999999999999877666899999999999


Q ss_pred             CCCccceeEEEEEEEEecCCceEEE--EEEEEeEEEEeeceEEEEeeeeeeeceeecCchhhHHHHHHHHHHHHHHHHHH
Q psy13236        159 PKNYWNGRWRSYWTINIEGNNVEVK--GNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQA  236 (280)
Q Consensus       159 p~NfwnG~WrS~w~~~~~~~~~~l~--G~I~v~vHYyEdGNVqL~~~k~~~~~~~~~~~~~~a~~iv~~I~~~E~~~q~~  236 (280)
                      |+|||||||||+|+|++++.+++|+  |+|+|+|||||||||||+++|+++.+++++++.++|++||+.|+++|++||++
T Consensus       159 p~NFwnGrWrS~w~~~~~~~~~~l~~~G~I~V~vHYyEDGNVqL~s~k~~~~s~~~~~~~~~a~~iv~~I~~~E~~~q~~  238 (281)
T 4akr_A          159 PNAFYSGRWRSVWTCTFKPGSGNVTSNGKVQVNVHYFEDGNVQLNTVTQKQTTSPSADAQSTAVNAFKAIGKAELNLHTA  238 (281)
T ss_dssp             GGGTEEEEEEEEEEEEECTTSSEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEECCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCceEEEEEEEecCCCCeEEECCEEEEEEEEeecceEEEEeccccccccccCCchhhHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999866567888  99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCChHHHhhhhhcCCCCCccccccceeeeeecccccC
Q psy13236        237 ISENYMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGKELKN  279 (280)
Q Consensus       237 L~~~~~~lse~~FK~LRR~LPVTR~KidW~ki~~yrlg~d~~~  279 (280)
                      |+++|++||+++||+||||||||||||||+||++||||+|+++
T Consensus       239 l~~~~~~ls~~tfK~LRR~LPvTRtKidW~ki~~yrlg~d~~~  281 (281)
T 4akr_A          239 LDNNYSTMGDTTFKALRRALPINRTKINWQKVKNFKIANELNK  281 (281)
T ss_dssp             HHHHHHHHHHTTTTTTSCSSCTTSCCCCTTCC-----------
T ss_pred             HHHHHHHhCHHHHHHhhccCCCCCCcccccccccchhhhhhcC
Confidence            9999999999999999999999999999999999999999964



>3aa0_A F-actin-capping protein subunit alpha-1; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 2kz7_A 1izn_A 3aa1_A* 3aa6_A 3aa7_A* 3aaa_A 3aae_A 3lk2_A 3lk3_A 3lk4_A 2kxp_A Back     alignment and structure
>3aa0_B F-actin-capping protein subunit beta isoforms 1 A; actin capping protein, barbed END regulation, carmil family conformational change; 1.70A {Gallus gallus} PDB: 3aa1_B* 3aa6_B 3aa7_B* 2kxp_B 3lk2_B Back     alignment and structure
>3lk4_B F-actin-capping protein subunit beta isoforms 1 and 2; CAPZ, CD2AP, actin filaments, uncapping, actin-filament regulators, protein-protein comple, actin capping, actin- binding; 1.99A {Gallus gallus} PDB: 2kz7_B 3aaa_B 3aae_B 3lk3_B 1izn_B Back     alignment and structure
>4akr_B F-actin-capping protein subunit beta; actin-binding protein; 2.20A {Dictyostelium discoideum} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 280
d1izna_275 e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallu 1e-134
>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]} Length = 275 Back     information, alignment and structure

class: Multi-domain proteins (alpha and beta)
fold: Subunits of heterodimeric actin filament capping protein Capz
superfamily: Subunits of heterodimeric actin filament capping protein Capz
family: Capz alpha-1 subunit
domain: Capz alpha-1 subunit
species: Chicken (Gallus gallus) [TaxId: 9031]
 Score =  377 bits (971), Expect = e-134
 Identities = 167/274 (60%), Positives = 202/274 (73%)

Query: 2   LTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKL 61
           ++D+EKVR+ + FI H+PPGEFNEVFNDVR LLNND LL++  + AF QYN +Q TPVK+
Sbjct: 2   VSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKI 61

Query: 62  NNSDLPVLISEHNDLGNGRFYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELE 121
              D  VLI+EH DLGNGRF DPR+K SFKFDHLR EASD +  + +++ + WR   +  
Sbjct: 62  EGYDDQVLITEHGDLGNGRFLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSA 121

Query: 122 LDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPKNYWNGRWRSYWTINIEGNNVE 181
           L  Y   HY NG  +V+ K       I ACIE HQFQPKN+WNGRWRS W   I     +
Sbjct: 122 LRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPKNFWNGRWRSEWKFTITPPTAQ 181

Query: 182 VKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISENY 241
           V   LK+QVHYYEDGNVQLVS KDI+++V V+S+ QTA+E +K+IE +E  YQ AISENY
Sbjct: 182 VAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISENY 241

Query: 242 MTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGK 275
            TMSDTTFKALRRQLPVTR KIDWNKI+SY IGK
Sbjct: 242 QTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK 275


Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query280
d1izna_275 Capz alpha-1 subunit {Chicken (Gallus gallus) [Tax 100.0
d1iznb_270 Capz beta-1 subunit {Chicken (Gallus gallus) [TaxI 98.38
>d1izna_ e.43.1.1 (A:) Capz alpha-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Subunits of heterodimeric actin filament capping protein Capz
superfamily: Subunits of heterodimeric actin filament capping protein Capz
family: Capz alpha-1 subunit
domain: Capz alpha-1 subunit
species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=100.00  E-value=1.4e-107  Score=748.23  Aligned_cols=275  Identities=61%  Similarity=0.985  Sum_probs=268.4

Q ss_pred             CCChHHHHHHHHHhhhcCCCCChHHHHHHHhhccCCCccchhHHHHHHHHHhhhcceeEEeCCCCCCeEEccccccCCCe
Q psy13236          1 MLTDQEKVRVVSGFILHSPPGEFNEVFNDVRGLLNNDVLLKDDVSKAFVQYNKEQLTPVKLNNSDLPVLISEHNDLGNGR   80 (280)
Q Consensus         1 ~~s~~ek~~ii~~fi~~aPPGE~~~V~~Dl~~l~~~d~~~~~~~~~a~~~yn~~~~~~v~~~~~~~~viis~~n~l~~~~   80 (280)
                      .||++||++||++||++||||||++|++|||.|++|+.++++++++||++||++||+||++||.+++||||+||+++++|
T Consensus         1 ~~s~~ek~~i~~~fi~~aPPGE~~~V~~Dl~~l~~d~~~~~~~~~~a~~~yN~~q~~~v~l~g~~~~viis~~n~l~~~r   80 (275)
T d1izna_           1 RVSDEEKVRIAAKFITHAPPGEFNEVFNDVRLLLNNDNLLREGAAHAFAQYNMDQFTPVKIEGYDDQVLITEHGDLGNGR   80 (275)
T ss_dssp             CCCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHTTEEECCTTSSCCEEECSTTBCSSSE
T ss_pred             CCCHHHHHHHHHHHHHcCCChhHHHHHHHHHHHhCCchHHHhhHHHHHHHHHHHheEEEEcCCCCccEEEEeccccCCCE
Confidence            38999999999999999999999999999999999999999999999999999999999999988999999999999999


Q ss_pred             eeeCCCCeeEEEeccceeeeccccCCCCCCchHHHHHHHHHHHHHhhhhcCCceEEEEeeccCCceeEEEEEEeeecCCC
Q psy13236         81 FYDPRSKQSFKFDHLRIEASDLESWEPDNSTETWRSLIELELDTYTASHYKNGTSSVFAKKQGETLQINACIEDHQFQPK  160 (280)
Q Consensus        81 y~DP~~~~~F~~Dhl~~~~~d~e~~~~~~~~e~~R~al~~~l~~Yv~~hyp~g~~~Vy~~~~~~~~~l~i~I~~~k~np~  160 (280)
                      ||||+++++|+|||++++|+|+||++.+..+|+||++|+++|.+|+++|||+|+|+||+++.++...|+|||++++|||+
T Consensus        81 y~Dp~~k~sF~~DHl~~~~sd~e~~~~~~~~e~~r~al~~~L~~Yv~~hYp~g~~~vy~~~~~~~~~l~i~I~~~~~~p~  160 (275)
T d1izna_          81 FLDPRNKISFKFDHLRKEASDPQPEDTESALKQWRDACDSALRAYVKDHYPNGFCTVYGKSIDGQQTIIACIESHQFQPK  160 (275)
T ss_dssp             EECTTTCEEEECCSSSSCCCCCEECCCCCSSHHHHHHHHHHHHHHHHHHCTTEEEEEEEEEETTEEEEEEEEEEEEEEGG
T ss_pred             EEccCcceEEEEEcccCeEccCccCCCcchhHHHHHHHHHHHHHHHHHhCCCCceEEEccCCCCCceEEEEEEeCcCCcc
Confidence            99999999999999999999999999988899999999999999999999999999999887887889999999999999


Q ss_pred             CccceeEEEEEEEEecCCceEEEEEEEEeEEEEeeceEEEEeeeeeeeceeecCchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13236        161 NYWNGRWRSYWTINIEGNNVEVKGNLKVQVHYYEDGNVQLVSSKDIKETVVVTSEEQTAREIVKLIEESETAYQQAISEN  240 (280)
Q Consensus       161 NfwnG~WrS~w~~~~~~~~~~l~G~I~v~vHYyEdGNVqL~~~k~~~~~~~~~~~~~~a~~iv~~I~~~E~~~q~~L~~~  240 (280)
                      |||||||||+|+|++++.+++|+|+|+|+|||||||||||+++|+++.++.++++.++|++||+.|+++|++||.+|+++
T Consensus       161 NFwnG~WrS~w~~~~~~~~~~l~G~i~v~vHYyEdGNVqL~s~k~~~~s~~~~~~~~~A~~iv~~I~~~E~~~q~~l~e~  240 (275)
T d1izna_         161 NFWNGRWRSEWKFTITPPTAQVAAVLKIQVHYYEDGNVQLVSHKDIQDSVQVSSDVQTAKEFIKIIENAENEYQTAISEN  240 (275)
T ss_dssp             GTEEEEEEEEEEEECCSSEEEEEEEEEEEEEECSSEEEEEEEEEEEEEEEECCCSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccCceeEEEEEEEccCCCcEEEEEEEEEEEEEecCeEEEEEccccccccccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999987678999999999999999999999999999999999988899999999999999999999999


Q ss_pred             HhcCChHHHhhhhhcCCCCCccccccceeeeeecc
Q psy13236        241 YMTMSDTTFKALRRQLPVTRMKIDWNKIVSYSIGK  275 (280)
Q Consensus       241 ~~~lse~~FK~LRR~LPVTR~KidW~ki~~yrlg~  275 (280)
                      |++||+++||+||||||||||||||+||++||||+
T Consensus       241 f~~ls~~~FK~LRR~LPVTR~KidW~ki~~yrlgk  275 (275)
T d1izna_         241 YQTMSDTTFKALRRQLPVTRTKIDWNKILSYKIGK  275 (275)
T ss_dssp             HHHHHHTHHHHHSCSSCTTSSCCCHHHHTTCCSCC
T ss_pred             HHHhCHHHHHHHHhhCCcCCcccchhhhcccccCC
Confidence            99999999999999999999999999999999997



>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure