Psyllid ID: psy13259
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 345 | ||||||
| 328778924 | 415 | PREDICTED: MOSC domain-containing protei | 0.869 | 0.722 | 0.375 | 6e-51 | |
| 380030626 | 676 | PREDICTED: uncharacterized protein LOC10 | 0.884 | 0.451 | 0.377 | 9e-51 | |
| 383856386 | 404 | PREDICTED: MOSC domain-containing protei | 0.884 | 0.754 | 0.379 | 1e-50 | |
| 340717405 | 442 | PREDICTED: MOSC domain-containing protei | 0.878 | 0.685 | 0.366 | 7e-50 | |
| 345487655 | 342 | PREDICTED: MOSC domain-containing protei | 0.904 | 0.912 | 0.354 | 4e-49 | |
| 350407693 | 628 | PREDICTED: hypothetical protein LOC10074 | 0.884 | 0.485 | 0.369 | 6e-49 | |
| 383853467 | 342 | PREDICTED: MOSC domain-containing protei | 0.904 | 0.912 | 0.354 | 4e-48 | |
| 91080253 | 347 | PREDICTED: similar to molybdopterin cofa | 0.944 | 0.939 | 0.341 | 7e-48 | |
| 350415491 | 342 | PREDICTED: MOSC domain-containing protei | 0.878 | 0.885 | 0.365 | 1e-47 | |
| 380026215 | 343 | PREDICTED: MOSC domain-containing protei | 0.875 | 0.880 | 0.359 | 3e-47 |
| >gi|328778924|ref|XP_003249565.1| PREDICTED: MOSC domain-containing protein 1, mitochondrial-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 207 bits (527), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 119/317 (37%), Positives = 180/317 (56%), Gaps = 17/317 (5%)
Query: 31 WTAIGRVSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQE--YILRDRNFVLFDKSKE 88
W +G++ +L +YPLKSG K L + G+ SL + + LRDR F+++++
Sbjct: 93 WVKVGQIQELYMYPLKSGRGKTLRECDFTQYGI----SLEDKGRFTLRDRMFLVYNEETG 148
Query: 89 KFITAKCYEQLVLVEMSVKDEETVEFNIRHDITPALVINV-NKVRSKAQLKSFKMHFNEV 147
+F T + Y L+L+ +S DE V+ P+++ V N + ++ M + E
Sbjct: 149 RFQTGRQYPTLILISLSAVDETKVKLEAVG--MPSVIFEVPNSTENASEAVQCTMWWGEP 206
Query: 148 VKAFDCGDEASDWFSMFLLNKTNRNIRLGMCCDYKRTI-ANSWDSYTQVYNLLSDEDTGR 206
VK DCG E ++W S FL T+ +RLG KR + W +TQVY L ++DTG
Sbjct: 207 VKCIDCGTEPAEWLSRFLTGTTS-GLRLGCTMMDKRNLFVEPWKKFTQVYQKLRNKDTGL 265
Query: 207 FSDITSYMIVNEESVNDLNTRVTCGEKFTSYHFRPNIVVKNCIPYEEDTWDWMKIGD-AI 265
FSD+TSYM++ SV LN ++ + FRPNI+V P+EED W+W+KIG+ +
Sbjct: 266 FSDLTSYMLMTTRSVEKLNEKLE--RPVPTLQFRPNILVSTQQPFEEDNWEWIKIGERVV 323
Query: 266 FRVVKPCTRCIAITFNPETAVKNPALEPIRTLRTYRRLGDIDHKAKHLEGHSPVMGVYAG 325
R VKPC+RC + NPE V + EP++TLR++R D + + LEG +PVMG+Y G
Sbjct: 324 IRNVKPCSRCKFVGVNPENGVMDKE-EPLKTLRSFREQTDPERVS--LEGKAPVMGIYCG 380
Query: 326 LYHPGCIRTNDIVFVAS 342
LY PG ++ D VF+ S
Sbjct: 381 LYIPGKVKIGDEVFIHS 397
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380030626|ref|XP_003698944.1| PREDICTED: uncharacterized protein LOC100869847 [Apis florea] | Back alignment and taxonomy information |
|---|
| >gi|383856386|ref|XP_003703690.1| PREDICTED: MOSC domain-containing protein 1, mitochondrial-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
| >gi|340717405|ref|XP_003397174.1| PREDICTED: MOSC domain-containing protein 1, mitochondrial-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
| >gi|345487655|ref|XP_001605008.2| PREDICTED: MOSC domain-containing protein 2, mitochondrial-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
| >gi|350407693|ref|XP_003488163.1| PREDICTED: hypothetical protein LOC100741218 [Bombus impatiens] | Back alignment and taxonomy information |
|---|
| >gi|383853467|ref|XP_003702244.1| PREDICTED: MOSC domain-containing protein 1, mitochondrial-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
| >gi|91080253|ref|XP_973258.1| PREDICTED: similar to molybdopterin cofactor sulfurase (mosc) [Tribolium castaneum] gi|270005692|gb|EFA02140.1| hypothetical protein TcasGA2_TC007790 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
| >gi|350415491|ref|XP_003490657.1| PREDICTED: MOSC domain-containing protein 1, mitochondrial-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
| >gi|380026215|ref|XP_003696850.1| PREDICTED: MOSC domain-containing protein 2, mitochondrial-like [Apis florea] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 345 | ||||||
| WB|WBGene00018925 | 340 | F56A11.5 [Caenorhabditis elega | 0.907 | 0.920 | 0.330 | 1.9e-37 | |
| FB|FBgn0033451 | 340 | CG1665 [Drosophila melanogaste | 0.843 | 0.855 | 0.311 | 1.2e-33 | |
| WB|WBGene00009049 | 339 | F22B8.7 [Caenorhabditis elegan | 0.924 | 0.941 | 0.296 | 2.3e-32 | |
| WB|WBGene00018758 | 339 | F53E10.1 [Caenorhabditis elega | 0.921 | 0.938 | 0.275 | 1.5e-28 | |
| UNIPROTKB|F1S9I9 | 336 | MARC2 "MOSC domain-containing | 0.721 | 0.741 | 0.327 | 3.1e-28 | |
| UNIPROTKB|Q5VT66 | 337 | MARC1 "MOSC domain-containing | 0.721 | 0.738 | 0.312 | 3.1e-28 | |
| MGI|MGI:1913362 | 340 | Marc1 "mitochondrial amidoxime | 0.721 | 0.732 | 0.315 | 5e-28 | |
| UNIPROTKB|Q1LZH1 | 336 | MARC2 "MOSC domain-containing | 0.710 | 0.729 | 0.320 | 1.5e-26 | |
| UNIPROTKB|G5E6I5 | 343 | MOSC1 "Uncharacterized protein | 0.724 | 0.728 | 0.311 | 1.9e-26 | |
| UNIPROTKB|F1Q1D9 | 304 | MARC1 "Uncharacterized protein | 0.710 | 0.805 | 0.295 | 5.2e-26 |
| WB|WBGene00018925 F56A11.5 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 402 (146.6 bits), Expect = 1.9e-37, P = 1.9e-37
Identities = 113/342 (33%), Positives = 174/342 (50%)
Query: 5 GALVVGYLYWYRQLQYKR--PKYELPE-RWTAIGRVSKLLIYPLKSGYYKELDCANCQLR 61
G L + W L K KY P+ W +GR+ L +YP+KS KE+ C
Sbjct: 13 GILGTSFFSWTAFLALKGLVKKYSKPKAEWVPVGRIKSLHLYPIKSCKGKEVFQYRCTPF 72
Query: 62 GMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKCYEQLVLVEMSVKDEET-VEFNIRHDI 120
G P L EY+ DR+F++ + S KF TA+ Q+VL+E +KD V + R D
Sbjct: 73 G----PRLG-EYL--DRHFLVIN-SDGKFYTARTKPQMVLIETLIKDGIVRVSYPGREDA 124
Query: 121 TPALVINVNKVRSKAQLKSFKMHFNEVVKAFDCGDEASDWFSMFLLNKTNRNIRLGMCCD 180
+ V++ L+S +H + +DCGD +++FS L R I
Sbjct: 125 Q----FKIEDVKANKDLRSGFLHVDLRTDGYDCGDAVAEFFSNVLEEPGTRVIMYDTGLF 180
Query: 181 YKRTIANS---WDSYTQVYNLLSDEDTGRFSDITSYMIVNEESVNDLNTRVTCGEKFTSY 237
+RT W++ +V + +DT ++D+ YMI ++ S++DLN+++ + +S
Sbjct: 181 TERTCKTEEGWWNN--EVPKRI--DDTA-YADLAPYMITSQASLDDLNSKLD--QNVSSI 233
Query: 238 HFRPNIVVKNCIPYEEDTWDWMKIGDAIFRVVKPCTRCIAITFNPETAVKNPALEPIRTL 297
+FRP IVV +C ++ED W ++IGD + KPCTRCI T NPET K+ ++P++ L
Sbjct: 234 NFRPCIVVDDCAAWDEDKWLDLRIGDVEMQCFKPCTRCILTTVNPETGTKDKDMQPLKKL 293
Query: 298 RTYRRLGDIDHKAKHLEGHSPVMGVYAGLYHPGCIRTNDIVF 339
R +R LG K + G SP+ GV AGL G I V+
Sbjct: 294 REFR-LGP--GKLRQEFGESPIFGVNAGLVKTGYIHVGQTVW 332
|
|
| FB|FBgn0033451 CG1665 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00009049 F22B8.7 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| WB|WBGene00018758 F53E10.1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1S9I9 MARC2 "MOSC domain-containing protein 2, mitochondrial" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q5VT66 MARC1 "MOSC domain-containing protein 1, mitochondrial" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
| MGI|MGI:1913362 Marc1 "mitochondrial amidoxime reducing component 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q1LZH1 MARC2 "MOSC domain-containing protein 2, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|G5E6I5 MOSC1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|F1Q1D9 MARC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 345 | |||
| COG3217 | 270 | COG3217, COG3217, Uncharacterized Fe-S protein [Ge | 4e-27 | |
| PLN02724 | 805 | PLN02724, PLN02724, Molybdenum cofactor sulfurase | 6e-24 | |
| pfam03476 | 118 | pfam03476, MOSC_N, MOSC N-terminal beta barrel dom | 7e-11 | |
| pfam03473 | 124 | pfam03473, MOSC, MOSC domain | 2e-10 |
| >gnl|CDD|225758 COG3217, COG3217, Uncharacterized Fe-S protein [General function prediction only] | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 4e-27
Identities = 79/305 (25%), Positives = 118/305 (38%), Gaps = 50/305 (16%)
Query: 36 RVSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKC 95
+S+L IYP+KS + L A G+ DR F+L D +FITA+
Sbjct: 3 TLSQLYIYPVKSLRGERLSRALVDASGLAG-----------DRRFMLVD-PDGRFITARR 50
Query: 96 YEQLVLVEMSVKDEETVEFNIRHDITPALVINVNKVRSKAQLKSFKMHFNEVVKAFDCGD 155
+V + + + + + + A ++ + HF A GD
Sbjct: 51 RPAMVRFTPAYEHDGLRLTAPDGEELYVRFADAQR----APVEVWGDHFT----ADAAGD 102
Query: 156 EASDWFSMFLLNKTNRNIRLGMCCDYKRTIANSWDSYTQVYNLLSDEDT--GRFSDITSY 213
A+DW S FL R + L WD + F+D
Sbjct: 103 AANDWLSGFL----GRAVSL------------RWDG-AGFARRVKAGPAVPVTFADGYPI 145
Query: 214 MIVNEESVNDLNTRVTCGEKFTSYHFRPNIVVKNCIPYEEDTWDWMKIGDAIFRVVKPCT 273
++ N S+ DL R FRPN+VV+ + ED+W ++IG F VVKPC+
Sbjct: 146 LLFNTASLADLRRR--VPANLEMERFRPNLVVEGEDAFAEDSWKSIRIGGVRFDVVKPCS 203
Query: 274 RCIAITFNPETAVKNPALEPIRTLRTYRRLGDIDHKAKHLEGHSPVMGVYAGLYHPGCIR 333
RCI T +P+T + P EP+ TL +R D + G + G IR
Sbjct: 204 RCIFTTVDPDTGERRPGGEPLFTLNRFRTNPDAGG---------VLFGQNLIARNEGRIR 254
Query: 334 TNDIV 338
D V
Sbjct: 255 VGDAV 259
|
Length = 270 |
| >gnl|CDD|215384 PLN02724, PLN02724, Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
| >gnl|CDD|217584 pfam03476, MOSC_N, MOSC N-terminal beta barrel domain | Back alignment and domain information |
|---|
| >gnl|CDD|217583 pfam03473, MOSC, MOSC domain | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 345 | |||
| KOG2362|consensus | 336 | 100.0 | ||
| PLN02724 | 805 | Molybdenum cofactor sulfurase | 100.0 | |
| COG3217 | 270 | Uncharacterized Fe-S protein [General function pre | 100.0 | |
| PF03476 | 120 | MOSC_N: MOSC N-terminal beta barrel domain; InterP | 99.96 | |
| PF03473 | 133 | MOSC: MOSC domain; InterPro: IPR005302 Molybdenum | 99.95 | |
| KOG2142|consensus | 728 | 99.12 | ||
| PRK14499 | 308 | molybdenum cofactor biosynthesis protein MoaC/MOSC | 98.83 | |
| PRK11536 | 223 | 6-N-hydroxylaminopurine resistance protein; Provis | 98.4 | |
| COG2258 | 210 | Uncharacterized protein conserved in bacteria [Fun | 98.32 |
| >KOG2362|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=458.24 Aligned_cols=288 Identities=33% Similarity=0.545 Sum_probs=243.9
Q ss_pred CcceeeeEEeEEeeccccccCceeeceEEeccCCccccccccccCCCCCceEEEEecCCCeeeecccccceeeEEEEEeC
Q psy13259 29 ERWTAIGRVSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKCYEQLVLVEMSVKD 108 (345)
Q Consensus 29 ~~~~~~~~V~~L~iyPVKS~~g~~v~~~~~~~~Gl~~~~~~~~~g~l~DR~~~l~d~~~g~~lt~r~~p~L~~i~~~~~~ 108 (345)
.+|..+++|++|++||||||+|++|.+..||..|.. .+.++||.|++++. +|+|+|+|..|.|.+|+....+
T Consensus 37 ~~w~~vg~v~slhiyPiKSC~~~~v~q~~ct~~g~~-------~e~~~DR~~lvVn~-kg~~iTaRv~P~l~~ies~~~~ 108 (336)
T KOG2362|consen 37 REWVPVGRVKSLHIYPIKSCKGIDVFQYKCTPLGPS-------MEFLWDRTFLVVNE-KGKFITARVKPKLVLIESEMPD 108 (336)
T ss_pred eeeEEeeeeeeeEEEEeccccccchhHhhcCCCCcc-------hhheeeceEEEEec-cceEEEeeccceEEEeeccccc
Confidence 499999999999999999999999999999999988 77889999999998 9999999999999999999988
Q ss_pred CcEEEEEEecCCCCeEEEeccccchhcccceeee-EEccceeeeccchHHHHHHHhhhcCCCC-------CceEEEEeec
Q psy13259 109 EETVEFNIRHDITPALVINVNKVRSKAQLKSFKM-HFNEVVKAFDCGDEASDWFSMFLLNKTN-------RNIRLGMCCD 180 (345)
Q Consensus 109 ~~~l~l~~~~p~~~~l~v~l~~~~~~~~~~~~~~-~~~~~~~~~d~gd~~~~wls~~lLg~~~-------~~~rLv~~~~ 180 (345)
+ .+.+.. |+.+..++++-....+. ...... .|+....++||||.++.|||+++ -..+ .++++.+.+.
T Consensus 109 ~-~~~v~~--~~~~~~s~~~~~~l~~~-~~~~~t~~~~~~~dg~~cgd~~~~~~s~~~-e~~~~~~~~~~~~~~~er~~~ 183 (336)
T KOG2362|consen 109 G-AFLVDW--PGPEKDSVLVFRVLGNK-RLKVATLFPDLSADGYDCGDWVASAFSEGI-EEPNWRLIFVGKGLYTERTNK 183 (336)
T ss_pred c-eeEEec--CCCcchhhhhhhhccCC-ccccccccccceeeccccHhhhhhhHHhhh-hccchhhhhhcCcceeeeccc
Confidence 8 788877 77666555543332221 122333 88889999999999999999883 3111 3344444311
Q ss_pred CccccccccCccccccccCCCCCcccccCCceeEEeecccHHHHhccccCCCCccccCccccEEEecCCCCCCCCccEEE
Q psy13259 181 YKRTIANSWDSYTQVYNLLSDEDTGRFSDITSYMIVNEESVNDLNTRVTCGEKFTSYHFRPNIVVKNCIPYEEDTWDWMK 260 (345)
Q Consensus 181 ~~~~~r~~~~~~~~~~~~~~~~~~~~f~D~~pi~lis~aSl~~Ln~~l~~~~~v~~~RFRpNIVI~g~~pf~Ed~W~~i~ 260 (345)
+. .. ....+.+.+.+...|+|.+||+|+|+|||++||.+| +++|++.||||||+|+||+||+||.|.+|+
T Consensus 184 ~~----~~----~~~~p~~~~~d~~~f~D~~Pfli~s~aSL~dLNt~L--~~~V~~~~FRpnI~vdgc~~~~ED~W~ei~ 253 (336)
T KOG2362|consen 184 PD----ET----WWNNPVPKRGDSTTFSDLAPFLIASQASLDDLNTRL--DKPVPMNNFRPNIVVDGCDAFAEDKWDEIR 253 (336)
T ss_pred CC----cc----ccCCCccCccccccccccchhhhhchhhHHHHHhhh--cCCccHhhcccceEEecCccccccccceEE
Confidence 11 00 112244566778999999999999999999999999 999999999999999999999999999999
Q ss_pred ECcEEEEEEEeccccceeeeeCCCCCCCCCCchHHHHHHhhhcCCCCcccccccCCCceeeeEEEEcCCCEEeeCCeEEE
Q psy13259 261 IGDAIFRVVKPCTRCIAITFNPETAVKNPALEPIRTLRTYRRLGDIDHKAKHLEGHSPVMGVYAGLYHPGCIRTNDIVFV 340 (345)
Q Consensus 261 IG~~~~~v~~pc~RC~~~tvdp~Tg~~~~~~epl~tL~~~Rr~~~~~~~~~~~~~~~~~fGvy~~v~~~G~I~VGD~V~v 340 (345)
||+++|+.++||+||++|||||+||+++. .||+++|++|| .+ ++++|+.+++++.||+|+...++|.|+|||.|+|
T Consensus 254 Igd~~~~~v~~CtRCiltTV~petG~~~k-~qpletLr~fR-~~--~~~~~~~~~~sp~fGv~~~~~~~g~I~vGd~Vyv 329 (336)
T KOG2362|consen 254 IGDAEFQCVAPCTRCILTTVDPETGEMSK-MQPLETLREFR-LD--PGKPRKVHMGSPLFGVYAGLVNEGTIKVGDTVYV 329 (336)
T ss_pred EccEEEEEEeeccceeeeeeccccccccc-cCchhhHHhhh-cC--CcccccccCCCcccceeecccccceEEeCCEEEE
Confidence 99999999999999999999999999994 89999999995 76 5788999999999999999999999999999999
Q ss_pred eee
Q psy13259 341 ASQ 343 (345)
Q Consensus 341 ~~~ 343 (345)
+.+
T Consensus 330 ~~k 332 (336)
T KOG2362|consen 330 LYK 332 (336)
T ss_pred Eec
Confidence 754
|
|
| >PLN02724 Molybdenum cofactor sulfurase | Back alignment and domain information |
|---|
| >COG3217 Uncharacterized Fe-S protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF03476 MOSC_N: MOSC N-terminal beta barrel domain; InterPro: IPR005303 This domain is found to the N terminus of MOSC domain (IPR005302 from INTERPRO) | Back alignment and domain information |
|---|
| >PF03473 MOSC: MOSC domain; InterPro: IPR005302 Molybdenum cofactor (MOCO) sulphurases [] catalyse the insertion of a terminal sulphur ligand into the molybdenum cofactor, thereby converting the oxo form of MOCO to a sulphurylated form | Back alignment and domain information |
|---|
| >KOG2142|consensus | Back alignment and domain information |
|---|
| >PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional | Back alignment and domain information |
|---|
| >PRK11536 6-N-hydroxylaminopurine resistance protein; Provisional | Back alignment and domain information |
|---|
| >COG2258 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 345 | |||
| 2exn_A | 136 | Hypothetical protein BOR11; beta barrel containing | 2e-14 |
| >2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1 Length = 136 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 2e-14
Identities = 15/129 (11%), Positives = 40/129 (31%), Gaps = 21/129 (16%)
Query: 37 VSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKCY 96
+S P+ Q E + +++ + +++
Sbjct: 1 MSTTAYQPIAE------------CGATTQ-----SEAAAYQKRWLVAN-DAGQWLNRDLC 42
Query: 97 EQLVLVEMSVKDEETVEFNIRHDITPALVINVNKVRSKAQLKSFKMHFNEVVKAFDCGDE 156
+L V + ++ V ++ L I ++ + ++ + + V D G+
Sbjct: 43 PRLAEVSVELRMGYLV---LKAPGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGEL 99
Query: 157 ASDWFSMFL 165
A+ W S
Sbjct: 100 AAAWISNHA 108
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 345 | |||
| 2exn_A | 136 | Hypothetical protein BOR11; beta barrel containing | 99.96 | |
| 1oru_A | 195 | YUAD protein; structural genomics, cytosolic hypot | 99.7 | |
| 1o65_A | 246 | Hypothetical protein YIIM; structural genomics, un | 99.38 | |
| 1oru_A | 195 | YUAD protein; structural genomics, cytosolic hypot | 91.49 |
| >2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-30 Score=219.29 Aligned_cols=119 Identities=13% Similarity=0.150 Sum_probs=106.3
Q ss_pred EeEEeeccccccCceeeceEEeccCCccccccccccCCCCCceEEEEecCCCeeeecccccceeeEEEEEeCCcEEEEEE
Q psy13259 37 VSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKCYEQLVLVEMSVKDEETVEFNI 116 (345)
Q Consensus 37 V~~L~iyPVKS~~g~~v~~~~~~~~Gl~~~~~~~~~g~l~DR~~~l~d~~~g~~lt~r~~p~L~~i~~~~~~~~~l~l~~ 116 (345)
|++|||||||||+|++++++. . +||+|||+|. +|+|+|||++|+|++|++.++++ .|+|++
T Consensus 1 v~~L~iYPIKSc~g~~l~~a~------~-----------~DR~wmlvd~-~G~~lt~r~~P~Lali~~~~~~~-~L~l~~ 61 (136)
T 2exn_A 1 MSTTAYQPIAECGATTQSEAA------A-----------YQKRWLVAND-AGQWLNRDLCPRLAEVSVELRMG-YLVLKA 61 (136)
T ss_dssp CCCCCEEEETTTEEECCGGGG------G-----------TCCSEEEEET-TSCEECTTTCGGGGCCEEEECSS-EEEEEC
T ss_pred CceEEEeccccCCceecCccC------c-----------cCCcEEEEeC-CCCEEEccCCccccEEEEEecCC-EEEEEe
Confidence 578999999999999999986 4 4999999998 99999999999999999999988 899999
Q ss_pred ecCCCCeEEEeccccchhcccceeee-EEccceeeeccchHHHHHHHhhhcCCCCCceEEEEeecCc
Q psy13259 117 RHDITPALVINVNKVRSKAQLKSFKM-HFNEVVKAFDCGDEASDWFSMFLLNKTNRNIRLGMCCDYK 182 (345)
Q Consensus 117 ~~p~~~~l~v~l~~~~~~~~~~~~~~-~~~~~~~~~d~gd~~~~wls~~lLg~~~~~~rLv~~~~~~ 182 (345)
||++++.+++++.... ......+ +|++.+.++|||+++++|||+| || .++||+++ ++.
T Consensus 62 --pg~~~l~vpl~~~~~~-~~~~~~v~vw~~~~~a~d~g~~~~~W~S~~-Lg---~p~rLv~~-~~~ 120 (136)
T 2exn_A 62 --PGMLRLDIPLDVIEDD-DSVRYQMLVGEQTVDVVDEGELAAAWISNH-AG---VPCRILKV-HPD 120 (136)
T ss_dssp --SSSCEEEEESSCCCSS-CSCEEEEEETTEEEEEEECCHHHHHHHHHH-TC---SSEEEEEE-CTT
T ss_pred --CCCceEEEECCCcccc-ccCceeEEEeCCcceeEeccHHHHHHHHHH-hC---CCeEEEEc-CCC
Confidence 9999999999765411 0135678 9999999999999999999999 99 78999999 664
|
| >1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2 | Back alignment and structure |
|---|
| >1o65_A Hypothetical protein YIIM; structural genomics, unknown function; 2.33A {Escherichia coli} SCOP: b.58.1.2 PDB: 1o67_A | Back alignment and structure |
|---|
| >1oru_A YUAD protein; structural genomics, cytosolic hypothetical protein, PSI, protein structure initiative, midwest center for structural genomics; HET: MSE; 1.80A {Bacillus subtilis} SCOP: b.58.1.2 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 345 | ||||
| d2exna1 | 128 | b.165.1.1 (A:1-128) Hypothetical protein BB0938 {B | 7e-10 | |
| d1orua_ | 182 | b.58.1.2 (A:) Hypothetical protein YuaD {Bacillus | 2e-04 | |
| d1o65a_ | 233 | b.58.1.2 (A:) Hypothetical protein YiiM {Escherich | 5e-04 |
| >d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]} Length = 128 | Back information, alignment and structure |
|---|
class: All beta proteins fold: MOSC N-terminal domain-like superfamily: MOSC N-terminal domain-like family: MOSC N-terminal domain-like domain: Hypothetical protein BB0938 species: Bordetella bronchiseptica [TaxId: 518]
Score = 54.2 bits (130), Expect = 7e-10
Identities = 16/129 (12%), Positives = 42/129 (32%), Gaps = 21/129 (16%)
Query: 37 VSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKCY 96
+S P+ C Q E + +++ + + +++
Sbjct: 1 MSTTAYQPIAE----------C--GATTQ-----SEAAAYQKRWLVANDAG-QWLNRDLC 42
Query: 97 EQLVLVEMSVKDEETVEFNIRHDITPALVINVNKVRSKAQLKSFKMHFNEVVKAFDCGDE 156
+L V + ++ V ++ L I ++ + ++ + + V D G+
Sbjct: 43 PRLAEVSVELRMGYLV---LKAPGMLRLDIPLDVIEDDDSVRYQMLVGEQTVDVVDEGEL 99
Query: 157 ASDWFSMFL 165
A+ W S
Sbjct: 100 AAAWISNHA 108
|
| >d1orua_ b.58.1.2 (A:) Hypothetical protein YuaD {Bacillus subtilis [TaxId: 1423]} Length = 182 | Back information, alignment and structure |
|---|
| >d1o65a_ b.58.1.2 (A:) Hypothetical protein YiiM {Escherichia coli [TaxId: 562]} Length = 233 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 345 | |||
| d2exna1 | 128 | Hypothetical protein BB0938 {Bordetella bronchisep | 99.97 | |
| d1orua_ | 182 | Hypothetical protein YuaD {Bacillus subtilis [TaxI | 99.49 | |
| d1o65a_ | 233 | Hypothetical protein YiiM {Escherichia coli [TaxId | 98.96 |
| >d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: MOSC N-terminal domain-like superfamily: MOSC N-terminal domain-like family: MOSC N-terminal domain-like domain: Hypothetical protein BB0938 species: Bordetella bronchiseptica [TaxId: 518]
Probab=99.97 E-value=2.6e-31 Score=220.57 Aligned_cols=120 Identities=12% Similarity=0.144 Sum_probs=106.4
Q ss_pred EeEEeeccccccCceeeceEEeccCCccccccccccCCCCCceEEEEecCCCeeeecccccceeeEEEEEeCCcEEEEEE
Q psy13259 37 VSKLLIYPLKSGYYKELDCANCQLRGMEQIPSLSQEYILRDRNFVLFDKSKEKFITAKCYEQLVLVEMSVKDEETVEFNI 116 (345)
Q Consensus 37 V~~L~iyPVKS~~g~~v~~~~~~~~Gl~~~~~~~~~g~l~DR~~~l~d~~~g~~lt~r~~p~L~~i~~~~~~~~~l~l~~ 116 (345)
|+.|++||||||+|++++ .||+ +||+|||+|+ +|+|+|||++|+|++|++.++++ .|+|++
T Consensus 1 ~s~~~~~PIKsc~g~~~~------~gl~-----------~DR~wmlvd~-~G~fltqR~~P~La~i~~~~~~~-~L~l~~ 61 (128)
T d2exna1 1 MSTTAYQPIAECGATTQS------EAAA-----------YQKRWLVAND-AGQWLNRDLCPRLAEVSVELRMG-YLVLKA 61 (128)
T ss_dssp CCCCCEEEETTTEEECCG------GGGG-----------TCCSEEEEET-TSCEECTTTCGGGGCCEEEECSS-EEEEEC
T ss_pred CcceeeecccccCCcccc------chhh-----------hceeEEEECC-CCCEEEcccCCcEEEEEEEEeCC-EEEEEe
Confidence 478999999999999985 4787 5999999997 99999999999999999999998 999999
Q ss_pred ecCCCCeEEEeccccchhcccceeee-EEccceeeeccchHHHHHHHhhhcCCCCCceEEEEeecCcc
Q psy13259 117 RHDITPALVINVNKVRSKAQLKSFKM-HFNEVVKAFDCGDEASDWFSMFLLNKTNRNIRLGMCCDYKR 183 (345)
Q Consensus 117 ~~p~~~~l~v~l~~~~~~~~~~~~~~-~~~~~~~~~d~gd~~~~wls~~lLg~~~~~~rLv~~~~~~~ 183 (345)
||++++.+|++...... .....+ +|++.+.++|||+++++|||++ || .++||+++ .|+.
T Consensus 62 --pg~~~l~vpL~~~~~~~-~~~~~v~vw~~~~~a~~~g~~~~~WfS~~-LG---~~~rLv~~-~p~~ 121 (128)
T d2exna1 62 --PGMLRLDIPLDVIEDDD-SVRYQMLVGEQTVDVVDEGELAAAWISNH-AG---VPCRILKV-HPDM 121 (128)
T ss_dssp --SSSCEEEEESSCCCSSC-SCEEEEEETTEEEEEEECCHHHHHHHHHH-TC---SSEEEEEE-CTTT
T ss_pred --cCCCceeeccccccccc-cceEEEEEcCCeeEEEECChHHHHHHHHH-hC---CceEEEEE-CCCC
Confidence 99999999997654321 134667 9999999999999999999999 99 78999999 6653
|
| >d1orua_ b.58.1.2 (A:) Hypothetical protein YuaD {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1o65a_ b.58.1.2 (A:) Hypothetical protein YiiM {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|