Psyllid ID: psy13357
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 833 | 2.2.26 [Sep-21-2011] | |||||||
| P22118 | 781 | DNA gyrase subunit B OS=N | yes | N/A | 0.927 | 0.989 | 0.509 | 0.0 | |
| Q9KVX3 | 805 | DNA gyrase subunit B OS=V | yes | N/A | 0.949 | 0.982 | 0.495 | 0.0 | |
| O51859 | 805 | DNA gyrase subunit B OS=V | yes | N/A | 0.948 | 0.981 | 0.487 | 0.0 | |
| P0A2I3 | 804 | DNA gyrase subunit B OS=S | yes | N/A | 0.948 | 0.982 | 0.483 | 0.0 | |
| P0A2I4 | 804 | DNA gyrase subunit B OS=S | N/A | N/A | 0.948 | 0.982 | 0.483 | 0.0 | |
| P0AES8 | 804 | DNA gyrase subunit B OS=S | yes | N/A | 0.948 | 0.982 | 0.481 | 0.0 | |
| P0AES6 | 804 | DNA gyrase subunit B OS=E | N/A | N/A | 0.948 | 0.982 | 0.481 | 0.0 | |
| P0AES7 | 804 | DNA gyrase subunit B OS=E | N/A | N/A | 0.948 | 0.982 | 0.481 | 0.0 | |
| P43701 | 806 | DNA gyrase subunit B OS=H | yes | N/A | 0.955 | 0.987 | 0.487 | 0.0 | |
| P13364 | 806 | DNA gyrase subunit B OS=P | yes | N/A | 0.954 | 0.986 | 0.489 | 0.0 |
| >sp|P22118|GYRB_NEIGO DNA gyrase subunit B OS=Neisseria gonorrhoeae GN=gyrB PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 818 bits (2112), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 422/829 (50%), Positives = 576/829 (69%), Gaps = 56/829 (6%)
Query: 11 IQDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYC 70
+ + + Y A SIQ+LEGLEAV KRP MYIGDT DG+GLHH+VFE+LDNAIDE+LAG+C
Sbjct: 1 MTEQKHEEYGADSIQVLEGLEAVPKRPGMYIGDTQDGSGLHHMVFEVLDNAIDEALAGHC 60
Query: 71 TKINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKIS 130
KI VTI++D+S+S++DNGRG+P I K RSAAE++MT LHAGGKF+ NSYKIS
Sbjct: 61 DKITVTIHADHSVSVADNGRGMPTGIH----PKEGRSAAEVIMTVLHAGGKFDNNSYKIS 116
Query: 131 GGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDT 190
GGLHG+G+S VN LS ++ LTI R+ K H++ F + G + P+KI+GD+
Sbjct: 117 GGLHGVGVSVVNALSDWVTLTIYRDGKEHFVRF------------VRGETEEPLKIVGDS 164
Query: 191 NKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGG 250
+K+GT + F + F NIE+ ++IL KRIRELSFLNNGV I L DER K E F GG
Sbjct: 165 DKKGTTVRFLAGTETFGNIEYSFDILAKRIRELSFLNNGVDIELTDERDGKHESFALSGG 224
Query: 251 TSGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQV 310
+GFV Y+N+ K +H IF A G +K+ ++++ +MQWN+SY E++ CFTNNI Q
Sbjct: 225 VAGFVQYMNRKKTPLHEKIFYAFG-----EKDGMSVECAMQWNDSYQESVQCFTNNIPQR 279
Query: 311 DGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQT 370
DGGTHLT LR +TR IN YIE NE KK+K+E G+D+REGLTCVLS+K+PDPKF+SQT
Sbjct: 280 DGGTHLTALRQVMTRTINSYIEANEVAKKAKVETAGDDMREGLTCVLSVKLPDPKFSSQT 339
Query: 371 KNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKN 430
K+KLVS E+ V E+I + L DFL+ENP E+K+I KI++AAR+R+AARK RE+TR+K
Sbjct: 340 KDKLVSGEIGPVVNEVINQALTDFLEENPNEAKIITGKIVDAARARQAARKAREITRRKG 399
Query: 431 LIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKA 490
L+D + L KLADCQEK+P L ELY+VEG+SAGGS QGRDR+FQA+LPL+GK+LN
Sbjct: 400 LMDGLGLPGKLADCQEKDPALSELYLVEGNSAGGSAMQGRDRKFQAILPLKGKILN---- 455
Query: 491 RFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYR 550
+ TLI+ LG GI ++EFN EKLRYHRIIIMTDAD+DGAHIR LLLTFFYR
Sbjct: 456 ----------VATLITALGAGIGKEEFNPEKLRYHRIIIMTDADVDGAHIRTLLLTFFYR 505
Query: 551 KMPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIK 610
+MP L+E GYIYIAQPPLYK KYG E YL+D++E+++++L +A + K++S +G I+
Sbjct: 506 QMPDLVERGYIYIAQPPLYKAKYGKQERYLKDELEKDQWLLGLALEKAKIVS--DGRTIE 563
Query: 611 ENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLN- 669
++ ++ + + +D +L A++ ++L + ENA++ ++ L+
Sbjct: 564 GAELADTAKQFLLAKTVIEQESRFVDELVLRAMLHASPIDLTSSENADKAVAELSGLLDE 623
Query: 670 -DSNIEIIV-----EFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFK 723
++ +E I +F ++ K N+ +++ K F+N+K Y+ L + K
Sbjct: 624 KEAALERIEGHEGHQFIKITRKLHGNVMVSYIEPK-------FLNSKAYQTLTQTAAALK 676
Query: 724 KIIGKGVIIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETT 783
++G+G + K E Y A++F ++ L + A+ + QRYKGLGEMNP QLWETT
Sbjct: 677 GLVGEGAKLYKGENE----YDADSFETALDILMSVAQKGMSIQRYKGLGEMNPEQLWETT 732
Query: 784 MNPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNID 832
M+P +R LLKV+I+D I AD++F+TLMGD VE RR FIE NAL A+NID
Sbjct: 733 MDPTVRRLLKVRIEDRI-ADEVFVTLMGDEVEPRRAFIENNALIAQNID 780
|
DNA gyrase negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner and also catalyzes the interconversion of other topological isomers of double-stranded DNA rings, including catenanes and knotted rings. Neisseria gonorrhoeae (taxid: 485) EC: 5EC: .EC: 9EC: 9EC: .EC: 1EC: .EC: 3 |
| >sp|Q9KVX3|GYRB_VIBCH DNA gyrase subunit B OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=gyrB PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|O51859|GYRB_VIBPA DNA gyrase subunit B OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=gyrB PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|P0A2I3|GYRB_SALTY DNA gyrase subunit B OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=gyrB PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|P0A2I4|GYRB_SALTI DNA gyrase subunit B OS=Salmonella typhi GN=gyrB PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|P0AES8|GYRB_SHIFL DNA gyrase subunit B OS=Shigella flexneri GN=gyrB PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|P0AES6|GYRB_ECOLI DNA gyrase subunit B OS=Escherichia coli (strain K12) GN=gyrB PE=1 SV=2 | Back alignment and function description |
|---|
| >sp|P0AES7|GYRB_ECO57 DNA gyrase subunit B OS=Escherichia coli O157:H7 GN=gyrB PE=3 SV=2 | Back alignment and function description |
|---|
| >sp|P43701|GYRB_HAEIN DNA gyrase subunit B OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=gyrB PE=3 SV=1 | Back alignment and function description |
|---|
| >sp|P13364|GYRB_PSEPU DNA gyrase subunit B OS=Pseudomonas putida GN=gyrB PE=3 SV=2 | Back alignment and function description |
|---|
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 833 | ||||||
| 399020745 | 835 | DNA gyrase, B subunit [Herbaspirillum sp | 0.986 | 0.984 | 0.648 | 0.0 | |
| 134093298 | 835 | DNA gyrase subunit B [Herminiimonas arse | 0.997 | 0.995 | 0.641 | 0.0 | |
| 340785200 | 826 | DNA gyrase subunit B [Collimonas fungivo | 0.977 | 0.985 | 0.642 | 0.0 | |
| 152980048 | 832 | DNA gyrase subunit B [Janthinobacterium | 0.983 | 0.984 | 0.645 | 0.0 | |
| 445499783 | 834 | DNA gyrase B subunit GyrB [Janthinobacte | 0.978 | 0.977 | 0.644 | 0.0 | |
| 398836814 | 832 | DNA gyrase, B subunit [Herbaspirillum sp | 0.995 | 0.996 | 0.630 | 0.0 | |
| 427400237 | 833 | DNA gyrase, B subunit [Massilia timonae | 0.978 | 0.978 | 0.630 | 0.0 | |
| 409408605 | 832 | DNA gyrase subunit B [Herbaspirillum sp. | 0.995 | 0.996 | 0.628 | 0.0 | |
| 415952619 | 832 | DNA gyrase subunit B [Herbaspirillum fri | 0.995 | 0.996 | 0.626 | 0.0 | |
| 300309349 | 832 | DNA gyrase subunit B [Herbaspirillum ser | 0.989 | 0.990 | 0.630 | 0.0 |
| >gi|399020745|ref|ZP_10722870.1| DNA gyrase, B subunit [Herbaspirillum sp. CF444] gi|398093976|gb|EJL84348.1| DNA gyrase, B subunit [Herbaspirillum sp. CF444] | Back alignment and taxonomy information |
|---|
Score = 1132 bits (2929), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 534/823 (64%), Positives = 678/823 (82%), Gaps = 1/823 (0%)
Query: 12 QDTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCT 71
+ Q++ Y ASSIQILEGLEAVRKRP MYIGDTSDGTGLHHLVFE+LDN+IDESLAG+CT
Sbjct: 13 EQPQQNQYGASSIQILEGLEAVRKRPGMYIGDTSDGTGLHHLVFEVLDNSIDESLAGHCT 72
Query: 72 KINVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISG 131
+I+VTI+SDNSISI+DNGRGIP IK+DDKH+PKRSAAEIVMTELHAGGKF++NSYK+SG
Sbjct: 73 EIHVTIHSDNSISITDNGRGIPTGIKMDDKHEPKRSAAEIVMTELHAGGKFDQNSYKVSG 132
Query: 132 GLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTN 191
GLHG+G+SCVNGLS+ L+LT+ R+ K+H MEF G+ Q+R I+ ++G+ VSPIK+IGDT+
Sbjct: 133 GLHGVGVSCVNGLSKLLRLTVRRDGKVHAMEFVRGIPQDRQIEVVDGVQVSPIKVIGDTD 192
Query: 192 KQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGT 251
K+GT++HFW DE+IF+++EFHYEIL KRIRELSFLNNGV I L D+R K+E F F+GGT
Sbjct: 193 KRGTEVHFWADEEIFTHVEFHYEILAKRIRELSFLNNGVHIRLTDQRTGKEEDFAFEGGT 252
Query: 252 SGFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVD 311
GFV YINK+K +++PTIFQA G ++S++ NI++DVSMQWN++YNE +LCFTNNI Q D
Sbjct: 253 RGFVEYINKNKSILNPTIFQATGERMSDQNTNISVDVSMQWNDAYNEQVLCFTNNIPQRD 312
Query: 312 GGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTK 371
GGTHLTGLR+ +TR INKYIEEN+F KK+K+E+ G+D+REGLTCVLS+K+P+PKF+SQTK
Sbjct: 313 GGTHLTGLRAAMTRVINKYIEENDFAKKAKVEVSGDDMREGLTCVLSVKVPEPKFSSQTK 372
Query: 372 NKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNL 431
+KLVSSEVR PVEEI+ KTL DFLQE P ++K+IC KI+EAAR+REAARK RELTR+K +
Sbjct: 373 DKLVSSEVRGPVEEIVAKTLTDFLQEKPNDAKIICGKIVEAARAREAARKARELTRRKGV 432
Query: 432 IDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKAR 491
+D + LS KLADCQEK+P LCELYIVEGDSAGGS KQGRDR+FQA+LPLRGKVLN+EKAR
Sbjct: 433 MDGLGLSAKLADCQEKDPALCELYIVEGDSAGGSAKQGRDRKFQAILPLRGKVLNVEKAR 492
Query: 492 FEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRK 551
FEK++ SEQITTLI+TLG I DEFN +KLRYHRIIIMTDAD+DGAHIR LLLT FYR+
Sbjct: 493 FEKMLSSEQITTLIATLGTSIGPDEFNADKLRYHRIIIMTDADVDGAHIRTLLLTLFYRQ 552
Query: 552 MPKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKE 611
MP+L+E G+IYIAQPPLYK+K G +E YL+DD+EE YM++IA + +L+ E I
Sbjct: 553 MPQLVERGHIYIAQPPLYKVKAGKDERYLKDDVEEAHYMMQIALNDAELVPSEGAAPISG 612
Query: 612 NYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDS 671
+L+ +YN I+ RL ++ID + LSAIM+ V L L+T AEQ A + +N+
Sbjct: 613 APLTELVRQYNTANAIIMRLTRMIDATALSAIMTGVTLQLNTAAEAEQSAVALKAAINEP 672
Query: 672 NIEIIVEFDQLNNKYLLNIKKKFLKK-KNYIIDINFINNKDYKKLVSIISTFKKIIGKGV 730
I++IV D+L +K++L I++ + K ID +F+N DY+ L + +TF+ +IG G
Sbjct: 673 GIDVIVRSDELTDKHVLRIQRMYHGNIKVTAIDTDFVNGPDYQVLANAAATFRGLIGPGA 732
Query: 731 IIQKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRC 790
+I++ G+KIK+ N+F++ + +LR EAE V KQRYKGLGEMNP QLWETTM+P +R
Sbjct: 733 LIRRGTGDKIKESAINDFHQAMAWLREEAERGVSKQRYKGLGEMNPEQLWETTMDPTVRR 792
Query: 791 LLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
LLKV+I+DAI+AD+IFMTLMGD+VE RR FIELNAL A NID+
Sbjct: 793 LLKVQIEDAIAADQIFMTLMGDDVEPRRAFIELNALQAGNIDV 835
|
Source: Herbaspirillum sp. CF444 Species: Herbaspirillum sp. CF444 Genus: Herbaspirillum Family: Oxalobacteraceae Order: Burkholderiales Class: Betaproteobacteria Phylum: Proteobacteria Superkingdom: Bacteria |
| >gi|134093298|ref|YP_001098373.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans] gi|133737201|emb|CAL60244.1| DNA gyrase subunit B [Herminiimonas arsenicoxydans] | Back alignment and taxonomy information |
|---|
| >gi|340785200|ref|YP_004750665.1| DNA gyrase subunit B [Collimonas fungivorans Ter331] gi|340550467|gb|AEK59842.1| DNA gyrase subunit B [Collimonas fungivorans Ter331] | Back alignment and taxonomy information |
|---|
| >gi|152980048|ref|YP_001351693.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille] gi|151280125|gb|ABR88535.1| DNA gyrase subunit B [Janthinobacterium sp. Marseille] | Back alignment and taxonomy information |
|---|
| >gi|445499783|ref|ZP_21466638.1| DNA gyrase B subunit GyrB [Janthinobacterium sp. HH01] gi|444789778|gb|ELX11326.1| DNA gyrase B subunit GyrB [Janthinobacterium sp. HH01] | Back alignment and taxonomy information |
|---|
| >gi|398836814|ref|ZP_10594142.1| DNA gyrase, B subunit [Herbaspirillum sp. YR522] gi|398210880|gb|EJM97514.1| DNA gyrase, B subunit [Herbaspirillum sp. YR522] | Back alignment and taxonomy information |
|---|
| >gi|427400237|ref|ZP_18891475.1| DNA gyrase, B subunit [Massilia timonae CCUG 45783] gi|425720977|gb|EKU83892.1| DNA gyrase, B subunit [Massilia timonae CCUG 45783] | Back alignment and taxonomy information |
|---|
| >gi|409408605|ref|ZP_11257040.1| DNA gyrase subunit B [Herbaspirillum sp. GW103] gi|386431927|gb|EIJ44755.1| DNA gyrase subunit B [Herbaspirillum sp. GW103] | Back alignment and taxonomy information |
|---|
| >gi|415952619|ref|ZP_11557187.1| DNA gyrase subunit B [Herbaspirillum frisingense GSF30] gi|407757356|gb|EKF67352.1| DNA gyrase subunit B [Herbaspirillum frisingense GSF30] | Back alignment and taxonomy information |
|---|
| >gi|300309349|ref|YP_003773441.1| DNA gyrase subunit B [Herbaspirillum seropedicae SmR1] gi|300072134|gb|ADJ61533.1| DNA gyrase subunit B protein [Herbaspirillum seropedicae SmR1] | Back alignment and taxonomy information |
|---|
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 833 | ||||||
| TIGR_CMR|SO_0011 | 805 | SO_0011 "DNA gyrase, B subunit | 0.950 | 0.983 | 0.440 | 1.7e-178 | |
| UNIPROTKB|P0AES6 | 804 | gyrB [Escherichia coli K-12 (t | 0.950 | 0.985 | 0.435 | 5.1e-177 | |
| TIGR_CMR|ECH_0620 | 798 | ECH_0620 "DNA gyrase, B subuni | 0.723 | 0.755 | 0.449 | 8.6e-160 | |
| UNIPROTKB|Q9KVX3 | 805 | gyrB "DNA gyrase subunit B" [V | 0.848 | 0.878 | 0.428 | 1.4e-156 | |
| TIGR_CMR|VC_0015 | 805 | VC_0015 "DNA gyrase, subunit B | 0.848 | 0.878 | 0.428 | 1.4e-156 | |
| UNIPROTKB|A6UX65 | 806 | gyrB "DNA gyrase subunit B" [P | 0.614 | 0.635 | 0.488 | 6.4e-153 | |
| UNIPROTKB|Q3KMH2 | 804 | gyrB_1 "DNA gyrase subunit B" | 0.689 | 0.713 | 0.434 | 2.5e-149 | |
| UNIPROTKB|Q74H89 | 795 | gyrB "DNA gyrase subunit B" [G | 0.655 | 0.686 | 0.426 | 2.4e-142 | |
| TIGR_CMR|GSU_0003 | 795 | GSU_0003 "DNA gyrase, B subuni | 0.655 | 0.686 | 0.426 | 2.4e-142 | |
| TIGR_CMR|NSE_0721 | 783 | NSE_0721 "DNA gyrase, B subuni | 0.624 | 0.664 | 0.456 | 8.1e-140 |
| TIGR_CMR|SO_0011 SO_0011 "DNA gyrase, B subunit" [Shewanella oneidensis MR-1 (taxid:211586)] | Back alignment and assigned GO terms |
|---|
Score = 1733 (615.1 bits), Expect = 1.7e-178, P = 1.7e-178
Identities = 365/829 (44%), Positives = 509/829 (61%)
Query: 16 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINV 75
E+SY +SSI++L+GL+AVRKRP MYIGDT DGTGLHH+VFE++DN+IDE+LAG+CT I +
Sbjct: 3 ENSYDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNSIDEALAGHCTDITI 62
Query: 76 TIYXXXXXXXXXXGRGXXXXXXXXXXXXXXRSAAEIVMTELHAGGKFNKNSYKISGGLHG 135
TI+ GRG SAAE++MT LHAGGKF+ NSYK+SGGLHG
Sbjct: 63 TIHVDGSVSVKDDGRGIPVSIHEEEGV----SAAEVIMTVLHAGGKFDDNSYKVSGGLHG 118
Query: 136 IGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGT 195
+G+S VN LS+ LQLTI R+ K+H + +GV +PIK IGD K GT
Sbjct: 119 VGVSVVNALSKKLQLTIRRDGKVHEQFYTHGVPD------------APIKEIGDATKTGT 166
Query: 196 KIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERXXXXXXXXXXXXTSGFV 255
+I FW E+ FSN+EFH+EIL KR+RELSFLN+GV I L+DER S FV
Sbjct: 167 EIRFWPSEQTFSNVEFHFEILAKRVRELSFLNSGVGIRLVDERDNKNEFFKYEGGISAFV 226
Query: 256 SYINKSKLVVHPTIFQAXXXXXXXXXXXXXXDVSMQWNNSYNENILCFTNNILQVDGGTH 315
Y+N++K V+ +F +V+MQWN+ Y ENI CFTNNI Q DGGTH
Sbjct: 227 DYLNRNKTPVNKDVFH----FMQERDDGITVEVAMQWNDGYQENIFCFTNNIPQRDGGTH 282
Query: 316 LTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLV 375
L G RS +TR +N Y+E + KK K G+D REGLT V+S+K+PDPKF+SQTK+KLV
Sbjct: 283 LAGFRSALTRNLNNYMENEGYNKKGKTNATGDDAREGLTAVISVKVPDPKFSSQTKDKLV 342
Query: 376 SSEVRKPVEEIIIKTLFDFLQENPGESKLICXXXXXXXXXXXXXXXXXXLTRKKNLIDDI 435
SSEV+ VE+ + + L D+L ENP ++KLI +TR+K +D
Sbjct: 343 SSEVKAAVEQTMGEKLNDYLLENPADAKLIVGKIVDAARAREAARKAREMTRRKGALDLG 402
Query: 436 ELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARFEKI 495
L KLADCQEK+P L E+YIVEGDSAGGS KQGR+R+ QA+LPL+GK+LN+EKARF+K+
Sbjct: 403 GLPGKLADCQEKDPGLSEIYIVEGDSAGGSAKQGRNRKNQAILPLKGKILNVEKARFDKM 462
Query: 496 ILSEQXXXXXXXXXXXXEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKL 555
+ S++ +DE+N +K RYH IIIMTDAD+DG+HIR LLLTFF+R+MP+L
Sbjct: 463 LSSQEVATLITALGCGIGRDEYNPDKTRYHNIIIMTDADVDGSHIRTLLLTFFFRQMPEL 522
Query: 556 IEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFF 615
IE GY+YIAQPPL+K+K G E YL+D+ +Y+ A + + +
Sbjct: 523 IERGYVYIAQPPLFKVKKGKQEQYLKDESALTQYLTTQALDGTSIYPSQGAPGMSGEPLE 582
Query: 616 KLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDT-------RENAEQFAKKIIKKL 668
+L+ +Y + IV RL+Q I + ++ +++ D +E + F ++++ L
Sbjct: 583 RLVTQYREVEAIVARLEQRYPTHITNRMLYHPMISNDMLADEAKMKEWIDAFIHELVE-L 641
Query: 669 NDSNI----EIIVEFDQXXXXXXXXXXXXXXXXXXXXXDINFINNKDYKKLVSIISTFXX 724
+S + E +++ + +F + DY+++ + +
Sbjct: 642 ENSGVLYSGEPVLD-PERKVYLPKITIRKHGIDTHYLFSYDFFQSMDYQRIAKLGAALEG 700
Query: 725 XXXXXXXXXXXXXEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTM 784
+++K+ +F + +++ +EA+ + QRYKGLGEMNP QLWETTM
Sbjct: 701 LIEVGGYVQRG--DRVKE--VGSFIEALDWTISEAKRGLYIQRYKGLGEMNPEQLWETTM 756
Query: 785 NPMIRCLLKVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
+P R +L+V I DA+ AD++F LMGD VE RR+FIE NAL+ N+D+
Sbjct: 757 DPESRRMLQVTIDDAVGADQLFTCLMGDQVEPRREFIEANALNVANLDV 805
|
|
| UNIPROTKB|P0AES6 gyrB [Escherichia coli K-12 (taxid:83333)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|ECH_0620 ECH_0620 "DNA gyrase, B subunit" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q9KVX3 gyrB "DNA gyrase subunit B" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|VC_0015 VC_0015 "DNA gyrase, subunit B" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|A6UX65 gyrB "DNA gyrase subunit B" [Pseudomonas aeruginosa PA7 (taxid:381754)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q3KMH2 gyrB_1 "DNA gyrase subunit B" [Chlamydia trachomatis A/HAR-13 (taxid:315277)] | Back alignment and assigned GO terms |
|---|
| UNIPROTKB|Q74H89 gyrB "DNA gyrase subunit B" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|GSU_0003 GSU_0003 "DNA gyrase, B subunit" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
| TIGR_CMR|NSE_0721 NSE_0721 "DNA gyrase, B subunit" [Neorickettsia sennetsu str. Miyayama (taxid:222891)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q68WF6 | GYRB_RICTY | 5, ., 9, 9, ., 1, ., 3 | 0.4624 | 0.9327 | 0.9628 | yes | N/A |
| P55992 | GYRB_HELPY | 5, ., 9, 9, ., 1, ., 3 | 0.4053 | 0.9099 | 0.9805 | yes | N/A |
| O08399 | GYRB_TREPA | 5, ., 9, 9, ., 1, ., 3 | 0.4624 | 0.6662 | 0.8712 | yes | N/A |
| Q9ZFK1 | GYRB_BORHE | 5, ., 9, 9, ., 1, ., 3 | 0.4853 | 0.6626 | 0.8706 | yes | N/A |
| P29435 | GYRB_BUCAP | 5, ., 9, 9, ., 1, ., 3 | 0.4993 | 0.9447 | 0.9800 | yes | N/A |
| Q9PKK3 | GYRB_CHLMU | 5, ., 9, 9, ., 1, ., 3 | 0.4890 | 0.6902 | 0.7151 | yes | N/A |
| P0A4M0 | GYRB_STRR6 | 5, ., 9, 9, ., 1, ., 3 | 0.4850 | 0.6518 | 0.8379 | yes | N/A |
| Q4UKX5 | GYRB_RICFE | 5, ., 9, 9, ., 1, ., 3 | 0.4624 | 0.9339 | 0.9628 | yes | N/A |
| P77993 | GYRB_THEMA | 5, ., 9, 9, ., 1, ., 3 | 0.4726 | 0.6758 | 0.8852 | yes | N/A |
| P22118 | GYRB_NEIGO | 5, ., 9, 9, ., 1, ., 3 | 0.5090 | 0.9279 | 0.9897 | yes | N/A |
| P05652 | GYRB_BACSU | 5, ., 9, 9, ., 1, ., 3 | 0.5077 | 0.6662 | 0.8699 | yes | N/A |
| Q9Z8R3 | GYRB_CHLPN | 5, ., 9, 9, ., 1, ., 3 | 0.4381 | 0.9315 | 0.9639 | yes | N/A |
| O51859 | GYRB_VIBPA | 5, ., 9, 9, ., 1, ., 3 | 0.4878 | 0.9483 | 0.9813 | yes | N/A |
| Q92H87 | GYRB_RICCN | 5, ., 9, 9, ., 1, ., 3 | 0.4554 | 0.9435 | 0.9739 | yes | N/A |
| O67137 | GYRB_AQUAE | 5, ., 9, 9, ., 1, ., 3 | 0.4242 | 0.9423 | 0.9911 | yes | N/A |
| Q9KVX3 | GYRB_VIBCH | 5, ., 9, 9, ., 1, ., 3 | 0.4957 | 0.9495 | 0.9826 | yes | N/A |
| P13364 | GYRB_PSEPU | 5, ., 9, 9, ., 1, ., 3 | 0.4891 | 0.9543 | 0.9863 | yes | N/A |
| Q5HK03 | GYRB_STAEQ | 5, ., 9, 9, ., 1, ., 3 | 0.4887 | 0.6614 | 0.8569 | yes | N/A |
| Q9X3Y6 | GYRB_BACAN | 5, ., 9, 9, ., 1, ., 3 | 0.4982 | 0.6686 | 0.8703 | yes | N/A |
| Q89B37 | GYRB_BUCBP | 5, ., 9, 9, ., 1, ., 3 | 0.5 | 0.9519 | 0.9863 | yes | N/A |
| Q8CQK4 | GYRB_STAES | 5, ., 9, 9, ., 1, ., 3 | 0.4887 | 0.6614 | 0.8569 | yes | N/A |
| P0A2I3 | GYRB_SALTY | 5, ., 9, 9, ., 1, ., 3 | 0.4836 | 0.9483 | 0.9825 | yes | N/A |
| P43701 | GYRB_HAEIN | 5, ., 9, 9, ., 1, ., 3 | 0.4873 | 0.9555 | 0.9875 | yes | N/A |
| P0DG05 | GYRB_STRPQ | 5, ., 9, 9, ., 1, ., 3 | 0.4729 | 0.6554 | 0.84 | yes | N/A |
| P0A4L9 | GYRB_STRPN | 5, ., 9, 9, ., 1, ., 3 | 0.4850 | 0.6518 | 0.8379 | yes | N/A |
| O87667 | GYRB_CAMJE | 5, ., 9, 9, ., 1, ., 3 | 0.4239 | 0.9099 | 0.9856 | yes | N/A |
| P33769 | GYRB_BORBU | 5, ., 9, 9, ., 1, ., 3 | 0.4864 | 0.6758 | 0.8880 | yes | N/A |
| O50627 | GYRB_BACHD | 5, ., 9, 9, ., 1, ., 3 | 0.4869 | 0.6578 | 0.8602 | yes | N/A |
| Q9I7C2 | GYRB_PSEAE | 5, ., 9, 9, ., 1, ., 3 | 0.4915 | 0.9543 | 0.9863 | yes | N/A |
| P66936 | GYRB_STAAM | 5, ., 9, 9, ., 1, ., 3 | 0.4544 | 0.7430 | 0.9611 | yes | N/A |
| P66937 | GYRB_STAAN | 5, ., 9, 9, ., 1, ., 3 | 0.4544 | 0.7430 | 0.9611 | yes | N/A |
| P57126 | GYRB_BUCAI | 5, ., 9, 9, ., 1, ., 3 | 0.4916 | 0.9339 | 0.9688 | yes | N/A |
| O29720 | GYRB_ARCFU | 5, ., 9, 9, ., 1, ., 3 | 0.4671 | 0.6674 | 0.8797 | yes | N/A |
| B8GXQ0 | GYRB_CAUCN | 5, ., 9, 9, ., 1, ., 3 | 0.4474 | 0.9471 | 0.9801 | yes | N/A |
| Q1RHT8 | GYRB_RICBR | 5, ., 9, 9, ., 1, ., 3 | 0.4506 | 0.9447 | 0.9740 | yes | N/A |
| D4GZ01 | GYRB_HALVD | 5, ., 9, 9, ., 1, ., 3 | 0.4722 | 0.6674 | 0.8701 | yes | N/A |
| Q9ZLX3 | GYRB_HELPJ | 5, ., 9, 9, ., 1, ., 3 | 0.4043 | 0.9195 | 0.9909 | yes | N/A |
| O87545 | GYRB_TREDE | 5, ., 9, 9, ., 1, ., 3 | 0.4735 | 0.6698 | 0.8746 | yes | N/A |
| Q9ZCX2 | GYRB_RICPR | 5, ., 9, 9, ., 1, ., 3 | 0.4583 | 0.9315 | 0.9615 | yes | N/A |
| O84193 | GYRB_CHLTR | 5, ., 9, 9, ., 1, ., 3 | 0.4890 | 0.6902 | 0.7151 | yes | N/A |
| P0AES8 | GYRB_SHIFL | 5, ., 9, 9, ., 1, ., 3 | 0.4812 | 0.9483 | 0.9825 | yes | N/A |
| P94604 | GYRB_CLOAB | 5, ., 9, 9, ., 1, ., 3 | 0.5 | 0.6674 | 0.8728 | yes | N/A |
| Q6GKU0 | GYRB_STAAR | 5, ., 9, 9, ., 1, ., 3 | 0.4528 | 0.7430 | 0.9611 | yes | N/A |
| P0CAX1 | GYRB_CAUCR | 5, ., 9, 9, ., 1, ., 3 | 0.4474 | 0.9471 | 0.9801 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.99.1.3 | 0.946 |
| 3rd Layer | 5.99.1 | 0.963 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 833 | |||
| PRK14939 | 756 | PRK14939, gyrB, DNA gyrase subunit B; Provisional | 0.0 | |
| PRK05644 | 638 | PRK05644, gyrB, DNA gyrase subunit B; Validated | 0.0 | |
| COG0187 | 635 | COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/ | 0.0 | |
| TIGR01059 | 654 | TIGR01059, gyrB, DNA gyrase, B subunit | 0.0 | |
| PRK05559 | 631 | PRK05559, PRK05559, DNA topoisomerase IV subunit B | 0.0 | |
| smart00433 | 594 | smart00433, TOP2c, TopoisomeraseII | 0.0 | |
| TIGR01058 | 637 | TIGR01058, parE_Gpos, DNA topoisomerase IV, B subu | 0.0 | |
| TIGR01055 | 625 | TIGR01055, parE_Gneg, DNA topoisomerase IV, B subu | 1e-138 | |
| PTZ00109 | 903 | PTZ00109, PTZ00109, DNA gyrase subunit b; Provisio | 1e-136 | |
| cd00822 | 172 | cd00822, TopoII_Trans_DNA_gyrase, TopoIIA_Trans_DN | 5e-71 | |
| cd03366 | 114 | cd03366, TOPRIM_TopoIIA_GyrB, TOPRIM_TopoIIA_GyrB: | 2e-65 | |
| cd01030 | 115 | cd01030, TOPRIM_TopoIIA_like, TOPRIM_TopoIIA_like: | 5e-60 | |
| pfam00204 | 173 | pfam00204, DNA_gyraseB, DNA gyrase B | 6e-59 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 5e-47 | |
| PHA02569 | 602 | PHA02569, 39, DNA topoisomerase II large subunit; | 1e-43 | |
| PLN03128 | 1135 | PLN03128, PLN03128, DNA topoisomerase 2; Provision | 1e-36 | |
| PRK05644 | 638 | PRK05644, gyrB, DNA gyrase subunit B; Validated | 1e-31 | |
| TIGR01059 | 654 | TIGR01059, gyrB, DNA gyrase, B subunit | 4e-29 | |
| COG0187 | 635 | COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/ | 7e-29 | |
| pfam00986 | 65 | pfam00986, DNA_gyraseB_C, DNA gyrase B subunit, ca | 2e-28 | |
| PLN03237 | 1465 | PLN03237, PLN03237, DNA topoisomerase 2; Provision | 3e-24 | |
| PRK05559 | 631 | PRK05559, PRK05559, DNA topoisomerase IV subunit B | 2e-22 | |
| smart00433 | 594 | smart00433, TOP2c, TopoisomeraseII | 7e-21 | |
| cd03365 | 120 | cd03365, TOPRIM_TopoIIA, TOPRIM_TopoIIA: topoisome | 3e-20 | |
| TIGR01058 | 637 | TIGR01058, parE_Gpos, DNA topoisomerase IV, B subu | 1e-17 | |
| cd00329 | 107 | cd00329, TopoII_MutL_Trans, MutL_Trans: transducer | 2e-13 | |
| pfam01751 | 86 | pfam01751, Toprim, Toprim domain | 2e-13 | |
| pfam02518 | 111 | pfam02518, HATPase_c, Histidine kinase-, DNA gyras | 6e-13 | |
| smart00387 | 111 | smart00387, HATPase_c, Histidine kinase-like ATPas | 9e-13 | |
| PTZ00109 | 903 | PTZ00109, PTZ00109, DNA gyrase subunit b; Provisio | 2e-12 | |
| cd00075 | 103 | cd00075, HATPase_c, Histidine kinase-like ATPases; | 1e-10 | |
| TIGR01055 | 625 | TIGR01055, parE_Gneg, DNA topoisomerase IV, B subu | 9e-08 | |
| cd00188 | 83 | cd00188, TOPRIM, Topoisomerase-primase domain | 6e-04 | |
| cd03481 | 153 | cd03481, TopoIIA_Trans_ScTopoIIA, TopoIIA_Trans_Sc | 9e-04 | |
| PRK00448 | 1437 | PRK00448, polC, DNA polymerase III PolC; Validated | 0.002 |
| >gnl|CDD|237860 PRK14939, gyrB, DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
Score = 1223 bits (3166), Expect = 0.0
Identities = 424/821 (51%), Positives = 577/821 (70%), Gaps = 65/821 (7%)
Query: 13 DTQESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTK 72
+SY ASSI++L+GL+AVRKRP MYIGDT DGTGLHH+V+E++DNAIDE+LAG+C
Sbjct: 1 SMMSNSYGASSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDD 60
Query: 73 INVTIYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGG 132
I VTI++D S+S+SDNGRGIP DI + SAAE++MT LHAGGKF++NSYK+SGG
Sbjct: 61 ITVTIHADGSVSVSDNGRGIPTDIH----PEEGVSAAEVIMTVLHAGGKFDQNSYKVSGG 116
Query: 133 LHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNK 192
LHG+G+S VN LS +L+LTI R+ KIH EF +G+ V+P+K++G+T+K
Sbjct: 117 LHGVGVSVVNALSEWLELTIRRDGKIHEQEFE------------HGVPVAPLKVVGETDK 164
Query: 193 QGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTS 252
GT++ FW +IF N EF Y+IL KR+REL+FLN+GV I L DER K+E F ++GG
Sbjct: 165 TGTEVRFWPSPEIFENTEFDYDILAKRLRELAFLNSGVRIRLKDERDGKEEEFHYEGGIK 224
Query: 253 GFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDG 312
FV Y+N++K +HP IF S +K+ I ++V++QWN+SY EN+LCFTNNI Q DG
Sbjct: 225 AFVEYLNRNKTPLHPNIFY-----FSGEKDGIGVEVALQWNDSYQENVLCFTNNIPQRDG 279
Query: 313 GTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKN 372
GTHL G R+ +TR IN YIE+ KK+K+ + G+D REGLT VLS+K+PDPKF+SQTK+
Sbjct: 280 GTHLAGFRAALTRTINNYIEKEGLAKKAKVSLTGDDAREGLTAVLSVKVPDPKFSSQTKD 339
Query: 373 KLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLI 432
KLVSSEVR VE ++ + L +FL+ENP E+K+I KII+AAR+REAARK RELTR+K +
Sbjct: 340 KLVSSEVRPAVESLVNEKLSEFLEENPNEAKIIVGKIIDAARAREAARKARELTRRKGAL 399
Query: 433 DDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARF 492
D L KLADCQEK+P L ELY+VEGDSAGGS KQGRDR+FQA+LPL+GK+LN+EKARF
Sbjct: 400 DIAGLPGKLADCQEKDPALSELYLVEGDSAGGSAKQGRDRKFQAILPLKGKILNVEKARF 459
Query: 493 EKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKM 552
+K++ S++I TLI+ LG GI +DEFN +KLRYH+IIIMTDAD+DG+HIR LLLTFFYR+M
Sbjct: 460 DKMLSSQEIGTLITALGCGIGRDEFNPDKLRYHKIIIMTDADVDGSHIRTLLLTFFYRQM 519
Query: 553 PKLIEYGYIYIAQPPLYKIKYGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKEN 612
P+LIE G++YIAQPPLYK+K G E YL+DD + Y++++A + L + +G I
Sbjct: 520 PELIERGHLYIAQPPLYKVKKGKQEQYLKDDEALDDYLIELALEGATLH-LADGPAISGE 578
Query: 613 YFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLDTRENAEQFAKKIIKKLNDSN 672
KL+ +Y +I+ RL++ ++L A++ L+LD + A
Sbjct: 579 ALEKLVKEYRAVRKIIDRLERRYPRAVLEALIYAPALDLDDLADEAAVAA---------- 628
Query: 673 IEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVII 732
+D +F+ + +Y++LV + + +I +G +
Sbjct: 629 -----------------------------LDADFLTSAEYRRLVELAEKLRGLIEEGAYL 659
Query: 733 QKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLL 792
++ GE +K ++F + +++L EA + QRYKGLGEMNP QLWETTM+P R LL
Sbjct: 660 ER--GE--RKQPVSSFEEALDWLLAEARKGLSIQRYKGLGEMNPEQLWETTMDPENRRLL 715
Query: 793 KVKIKDAISADKIFMTLMGDNVELRRKFIELNALHAKNIDI 833
+V I+DAI+AD+IF TLMGD VE RR+FIE NAL+ N+D+
Sbjct: 716 QVTIEDAIAADEIFTTLMGDEVEPRREFIEENALNVANLDV 756
|
Length = 756 |
| >gnl|CDD|235542 PRK05644, gyrB, DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|223265 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|233254 TIGR01059, gyrB, DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII | Back alignment and domain information |
|---|
| >gnl|CDD|130130 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >gnl|CDD|130127 TIGR01055, parE_Gneg, DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238419 cd00822, TopoII_Trans_DNA_gyrase, TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E | Back alignment and domain information |
|---|
| >gnl|CDD|173786 cd03366, TOPRIM_TopoIIA_GyrB, TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit | Back alignment and domain information |
|---|
| >gnl|CDD|173780 cd01030, TOPRIM_TopoIIA_like, TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >gnl|CDD|215785 pfam00204, DNA_gyraseB, DNA gyrase B | Back alignment and domain information |
|---|
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|177398 PHA02569, 39, DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215593 PLN03128, PLN03128, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235542 PRK05644, gyrB, DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|233254 TIGR01059, gyrB, DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >gnl|CDD|223265 COG0187, GyrB, Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|201537 pfam00986, DNA_gyraseB_C, DNA gyrase B subunit, carboxyl terminus | Back alignment and domain information |
|---|
| >gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235501 PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|214659 smart00433, TOP2c, TopoisomeraseII | Back alignment and domain information |
|---|
| >gnl|CDD|173785 cd03365, TOPRIM_TopoIIA, TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >gnl|CDD|130130 TIGR01058, parE_Gpos, DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >gnl|CDD|238202 cd00329, TopoII_MutL_Trans, MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins | Back alignment and domain information |
|---|
| >gnl|CDD|216679 pfam01751, Toprim, Toprim domain | Back alignment and domain information |
|---|
| >gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | Back alignment and domain information |
|---|
| >gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >gnl|CDD|240272 PTZ00109, PTZ00109, DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >gnl|CDD|130127 TIGR01055, parE_Gneg, DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >gnl|CDD|173773 cd00188, TOPRIM, Topoisomerase-primase domain | Back alignment and domain information |
|---|
| >gnl|CDD|239563 cd03481, TopoIIA_Trans_ScTopoIIA, TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA | Back alignment and domain information |
|---|
| >gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 833 | |||
| COG0187 | 635 | GyrB Type IIA topoisomerase (DNA gyrase/topo II, t | 100.0 | |
| PRK14939 | 756 | gyrB DNA gyrase subunit B; Provisional | 100.0 | |
| PTZ00109 | 903 | DNA gyrase subunit b; Provisional | 100.0 | |
| TIGR01058 | 637 | parE_Gpos DNA topoisomerase IV, B subunit, Gram-po | 100.0 | |
| PRK05559 | 631 | DNA topoisomerase IV subunit B; Reviewed | 100.0 | |
| PRK05644 | 638 | gyrB DNA gyrase subunit B; Validated | 100.0 | |
| TIGR01055 | 625 | parE_Gneg DNA topoisomerase IV, B subunit, proteob | 100.0 | |
| TIGR01059 | 654 | gyrB DNA gyrase, B subunit. This model describes t | 100.0 | |
| PHA02569 | 602 | 39 DNA topoisomerase II large subunit; Provisional | 100.0 | |
| smart00433 | 594 | TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras | 100.0 | |
| PTZ00108 | 1388 | DNA topoisomerase 2-like protein; Provisional | 100.0 | |
| PLN03128 | 1135 | DNA topoisomerase 2; Provisional | 100.0 | |
| PLN03237 | 1465 | DNA topoisomerase 2; Provisional | 100.0 | |
| KOG0355|consensus | 842 | 100.0 | ||
| cd03366 | 114 | TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisome | 100.0 | |
| cd01030 | 115 | TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisome | 100.0 | |
| cd03365 | 120 | TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-prima | 100.0 | |
| cd00822 | 172 | TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: | 100.0 | |
| PF00204 | 173 | DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA | 100.0 | |
| PF00986 | 65 | DNA_gyraseB_C: DNA gyrase B subunit, carboxyl term | 99.98 | |
| cd03481 | 153 | TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: T | 99.96 | |
| PRK00095 | 617 | mutL DNA mismatch repair protein; Reviewed | 99.92 | |
| TIGR01052 | 488 | top6b DNA topoisomerase VI, B subunit. This model | 99.88 | |
| COG1389 | 538 | DNA topoisomerase VI, subunit B [DNA replication, | 99.86 | |
| PRK04184 | 535 | DNA topoisomerase VI subunit B; Validated | 99.82 | |
| TIGR00585 | 312 | mutl DNA mismatch repair protein MutL. All protein | 99.71 | |
| PRK14867 | 659 | DNA topoisomerase VI subunit B; Provisional | 99.64 | |
| COG0323 | 638 | MutL DNA mismatch repair enzyme (predicted ATPase) | 99.56 | |
| PRK14868 | 795 | DNA topoisomerase VI subunit B; Provisional | 99.55 | |
| PRK14939 | 756 | gyrB DNA gyrase subunit B; Provisional | 99.08 | |
| PF01751 | 100 | Toprim: Toprim domain; InterPro: IPR006171 This is | 99.07 | |
| KOG1978|consensus | 672 | 98.88 | ||
| PF02518 | 111 | HATPase_c: Histidine kinase-, DNA gyrase B-, and H | 98.79 | |
| KOG1979|consensus | 694 | 98.79 | ||
| PRK05218 | 613 | heat shock protein 90; Provisional | 98.77 | |
| PF13589 | 137 | HATPase_c_3: Histidine kinase-, DNA gyrase B-, and | 98.71 | |
| cd00329 | 107 | TopoII_MutL_Trans MutL_Trans: transducer domain, h | 98.65 | |
| PRK14083 | 601 | HSP90 family protein; Provisional | 98.15 | |
| KOG1977|consensus | 1142 | 97.99 | ||
| cd00075 | 103 | HATPase_c Histidine kinase-like ATPases; This fami | 97.89 | |
| PTZ00272 | 701 | heat shock protein 83 kDa (Hsp83); Provisional | 97.85 | |
| smart00387 | 111 | HATPase_c Histidine kinase-like ATPases. Histidine | 97.56 | |
| COG0326 | 623 | HtpG Molecular chaperone, HSP90 family [Posttransl | 97.51 | |
| PTZ00130 | 814 | heat shock protein 90; Provisional | 97.16 | |
| PF13581 | 125 | HATPase_c_2: Histidine kinase-like ATPase domain | 97.1 | |
| PRK04069 | 161 | serine-protein kinase RsbW; Provisional | 97.0 | |
| PRK15053 | 545 | dpiB sensor histidine kinase DpiB; Provisional | 96.92 | |
| COG2205 | 890 | KdpD Osmosensitive K+ channel histidine kinase [Si | 96.84 | |
| TIGR02938 | 494 | nifL_nitrog nitrogen fixation negative regulator N | 96.75 | |
| PRK11086 | 542 | sensory histidine kinase DcuS; Provisional | 96.63 | |
| TIGR01925 | 137 | spIIAB anti-sigma F factor. This model describes t | 96.6 | |
| TIGR01386 | 457 | cztS_silS_copS heavy metal sensor kinase. Members | 96.58 | |
| PRK10604 | 433 | sensor protein RstB; Provisional | 96.53 | |
| COG3290 | 537 | CitA Signal transduction histidine kinase regulati | 96.5 | |
| COG3920 | 221 | Signal transduction histidine kinase [Signal trans | 96.38 | |
| PRK09470 | 461 | cpxA two-component sensor protein; Provisional | 96.36 | |
| PRK10549 | 466 | signal transduction histidine-protein kinase BaeS; | 96.3 | |
| PRK11006 | 430 | phoR phosphate regulon sensor protein; Provisional | 96.3 | |
| TIGR01924 | 159 | rsbW_low_gc serine-protein kinase RsbW. This model | 96.29 | |
| PRK03660 | 146 | anti-sigma F factor; Provisional | 96.16 | |
| PRK10364 | 457 | sensor protein ZraS; Provisional | 96.15 | |
| PRK10337 | 449 | sensor protein QseC; Provisional | 96.01 | |
| PRK09303 | 380 | adaptive-response sensory kinase; Validated | 95.97 | |
| PRK11073 | 348 | glnL nitrogen regulation protein NR(II); Provision | 95.95 | |
| PRK09467 | 435 | envZ osmolarity sensor protein; Provisional | 95.68 | |
| PRK09835 | 482 | sensor kinase CusS; Provisional | 95.5 | |
| COG4191 | 603 | Signal transduction histidine kinase regulating C4 | 95.44 | |
| PRK10815 | 485 | sensor protein PhoQ; Provisional | 95.43 | |
| TIGR03785 | 703 | marine_sort_HK proteobacterial dedicated sortase s | 95.28 | |
| TIGR02916 | 679 | PEP_his_kin putative PEP-CTERM system histidine ki | 95.27 | |
| PRK10755 | 356 | sensor protein BasS/PmrB; Provisional | 95.27 | |
| COG3850 | 574 | NarQ Signal transduction histidine kinase, nitrate | 95.24 | |
| COG0642 | 336 | BaeS Signal transduction histidine kinase [Signal | 95.2 | |
| PRK11100 | 475 | sensory histidine kinase CreC; Provisional | 95.07 | |
| TIGR02966 | 333 | phoR_proteo phosphate regulon sensor kinase PhoR. | 95.04 | |
| PRK15347 | 921 | two component system sensor kinase SsrA; Provision | 95.02 | |
| PRK11466 | 914 | hybrid sensory histidine kinase TorS; Provisional | 94.92 | |
| PRK11644 | 495 | sensory histidine kinase UhpB; Provisional | 94.77 | |
| PRK11360 | 607 | sensory histidine kinase AtoS; Provisional | 94.59 | |
| PRK13837 | 828 | two-component VirA-like sensor kinase; Provisional | 94.37 | |
| PRK10600 | 569 | nitrate/nitrite sensor protein NarX; Provisional | 94.18 | |
| PRK10490 | 895 | sensor protein KdpD; Provisional | 94.04 | |
| PRK13560 | 807 | hypothetical protein; Provisional | 93.85 | |
| COG4585 | 365 | Signal transduction histidine kinase [Signal trans | 93.65 | |
| TIGR02956 | 968 | TMAO_torS TMAO reductase sytem sensor TorS. This p | 93.56 | |
| PRK10618 | 894 | phosphotransfer intermediate protein in two-compon | 93.37 | |
| PRK11091 | 779 | aerobic respiration control sensor protein ArcB; P | 93.36 | |
| COG3852 | 363 | NtrB Signal transduction histidine kinase, nitroge | 93.24 | |
| COG2172 | 146 | RsbW Anti-sigma regulatory factor (Ser/Thr protein | 93.15 | |
| PRK10841 | 924 | hybrid sensory kinase in two-component regulatory | 92.78 | |
| PRK11107 | 919 | hybrid sensory histidine kinase BarA; Provisional | 92.54 | |
| PRK10547 | 670 | chemotaxis protein CheA; Provisional | 92.39 | |
| PRK13557 | 540 | histidine kinase; Provisional | 92.39 | |
| PRK09959 | 1197 | hybrid sensory histidine kinase in two-component r | 92.22 | |
| COG5000 | 712 | NtrY Signal transduction histidine kinase involved | 92.1 | |
| PRK13559 | 361 | hypothetical protein; Provisional | 91.83 | |
| cd00188 | 83 | TOPRIM Topoisomerase-primase domain. This is a nuc | 91.49 | |
| KOG0787|consensus | 414 | 89.94 | ||
| COG3851 | 497 | UhpB Signal transduction histidine kinase, glucose | 88.19 | |
| COG5002 | 459 | VicK Signal transduction histidine kinase [Signal | 87.64 | |
| COG4564 | 459 | Signal transduction histidine kinase [Signal trans | 86.96 | |
| PRK10935 | 565 | nitrate/nitrite sensor protein NarQ; Provisional | 86.12 | |
| COG4192 | 673 | Signal transduction histidine kinase regulating ph | 85.47 | |
| PF14501 | 100 | HATPase_c_5: GHKL domain | 84.99 | |
| KOG0020|consensus | 785 | 82.59 |
| >COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-226 Score=1887.71 Aligned_cols=630 Identities=59% Similarity=0.959 Sum_probs=605.3
Q ss_pred CCCCCccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCcccc
Q psy13357 16 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPID 95 (833)
Q Consensus 16 ~~~Y~~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~ 95 (833)
.++|++++|+||+||||||||||||||||++++||||||||||||||||++||||+.|.|+||+||||||.||||||||+
T Consensus 3 ~~~Y~a~~I~vL~GLEaVRkRPGMYIGst~~~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~sisV~DnGRGIPvd 82 (635)
T COG0187 3 TNNYDASSIQVLEGLEAVRKRPGMYIGSTGDGRGLHHLVWEVVDNSIDEALAGYADRIDVTLHEDGSISVEDNGRGIPVD 82 (635)
T ss_pred cCcCCHhHceeccCcHHhhcCCCceeccCCCCCcceeeEeEeeechHhHHhhCcCcEEEEEEcCCCeEEEEECCCCCccc
Confidence 46799999999999999999999999999998999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEccccccccccc
Q psy13357 96 IKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKT 175 (833)
Q Consensus 96 ~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~ 175 (833)
+||+ +++|++|+|||+||||||||+++|++||||||||+|||||||+||+|+|+|+|+.|+|+|++|
T Consensus 83 iH~~----~~~~~vEvI~T~LHAGGKFd~~~YkvSGGLHGVG~SVVNALS~~l~v~v~r~gk~y~q~f~~G--------- 149 (635)
T COG0187 83 IHPK----EKVSAVEVIFTVLHAGGKFDNDSYKVSGGLHGVGVSVVNALSTWLEVEVKRDGKIYRQRFERG--------- 149 (635)
T ss_pred cCCC----CCCCceEEEEEeeccCcccCCCccEeecCCCccceEEEecccceEEEEEEECCEEEEEEEeCC---------
Confidence 9998 889999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCceEecc--CCCCccEEEEEeCccccccccccHHHHHHHHHHhhccCCCcEEEEeecccceEE-EEEeCCCcc
Q psy13357 176 INGISVSPIKIIGD--TNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLNNGVCITLIDERIKKKE-IFEFKGGTS 252 (833)
Q Consensus 176 ~~~~~~~~l~~~g~--~~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~-~f~~~~Gl~ 252 (833)
.++++++++|. .+++||+|+||||++||++..|++++|.+|||++|||||||+|.|+|+|....+ .|||++|+.
T Consensus 150 ---~~~~~l~~ig~~~~~~~GT~V~F~PD~~iF~~~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~~~~~~~~~y~~Gl~ 226 (635)
T COG0187 150 ---VPVTPLEVIGSTDTKKTGTKVRFKPDPEIFGETEFDYEILKRRLRELAFLNKGVKITLTDERTGEEKKEFHYEGGLK 226 (635)
T ss_pred ---CcCCCceecccCCCCCCccEEEEEcChHhcCCcccCHHHHHHHHHHHhccCCCCEEEEEeccCCcccceeecccHHH
Confidence 78888888885 457899999999999999999999999999999999999999999999975322 599999999
Q ss_pred hhhhhhhcCCCccCCceEEEeeccccccCCceEEEEeeeecCCCcceeEEeecceeccCCcchHHHHHHHHHHHHHHHHH
Q psy13357 253 GFVSYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTHLTGLRSGITRAINKYIE 332 (833)
Q Consensus 253 ~fv~~l~~~k~~l~~~~i~~~~e~~~~~~~~i~veval~~~d~~~e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~ 332 (833)
+|+++++.++.++|+.++++.++. .++.||||+||+++|+++++||||||+|++||||++||++||+|+||+|++
T Consensus 227 ~yv~~l~~~k~~l~~~~~~~~~~~-----~~~~vEvA~q~~d~~~e~~~SFvNnI~T~eGGTH~~Gfr~altr~in~y~~ 301 (635)
T COG0187 227 DYVEYLNKGKTPLHEEIFYFNGEK-----DGIAVEVALQWNDGYSENILSFVNNIPTREGGTHEAGFRSALTRAINEYAK 301 (635)
T ss_pred HHHHHHhcCCCccccCceecccCc-----cceEEEEEEEEecCCceEEEEeecCccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 999999999999999899987776 789999999999999999999999999999999999999999999999999
Q ss_pred HcccccccCCCCCHHHHhhcceeEEEEeecCCCCCccccccccccccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Q psy13357 333 ENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEA 412 (833)
Q Consensus 333 ~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~ 412 (833)
+.+++|+.+ ++++||||||+|||||+||||||+||||+||+|++++++|++++.+.|..||++||..|+.|+++++.+
T Consensus 302 ~~~~~k~~~--l~g~Diregl~aviSvki~~PqFegQTK~KL~n~e~~~~V~~~v~~~~~~~l~enp~~a~~i~~k~i~a 379 (635)
T COG0187 302 KKNLLKEGD--LTGDDIREGLTAVISVKIPDPQFEGQTKEKLGNSEVRSIVEKLVSEAFSLFLEENPQEAKKIVEKAIAA 379 (635)
T ss_pred HhCcCcccC--CCHHHHhhccEEEEEEECCCCCcCcccccccccHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHH
Confidence 999988765 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHhhhcccccccccccccccccCCCCCCceEEEEeecCCCccccccccCCcceeecccCcccccccccch
Q psy13357 413 ARSREAARKTRELTRKKNLIDDIELSTKLADCQEKNPELCELYIVEGDSAGGSVKQGRDRRFQAVLPLRGKVLNIEKARF 492 (833)
Q Consensus 413 a~ar~aa~kar~~~r~k~~~~~~~lpgKL~dc~~kd~~~~eLflvEGDSAgGsak~gRdr~~qailPLrGKiLNv~ka~~ 492 (833)
|+||+|||+||+++|||++++...||||||||+++||++|||||||||||||||||||||+|||||||||||||||||+.
T Consensus 380 a~aR~aarkare~~R~k~~~~~~~LpGKLadC~skd~~~~ELfiVEGDSAGGSAKqgRdR~~QAILPLRGKiLNVeka~~ 459 (635)
T COG0187 380 AKAREAARKARELTRRKSALDIPGLPGKLADCTSKDPEKSELFLVEGDSAGGSAKQGRDREFQAILPLRGKILNVEKARL 459 (635)
T ss_pred HHHHHHHHHHHHHHhhhcccccCCCCCcCcccccCCcccceEEEEecCCcchhhhhccCccceEEecccCcchhhhhccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeeccCCCCCchhHHHHHHHHHHHhcHhhhhcCcEEEEcCcEEEEE
Q psy13357 493 EKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMTDADIDGAHIRALLLTFFYRKMPKLIEYGYIYIAQPPLYKIK 572 (833)
Q Consensus 493 ~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImTDADvDGsHI~~Llltff~r~~p~Li~~G~vyia~pPLykv~ 572 (833)
+||++|+||++|++|||||+++ +||+++||||||||||||||||+|||||||||||||||+||++|||||||||||||+
T Consensus 460 ~kil~N~EI~~ii~AlG~g~~~-~fd~~~LRY~kIiIMTDADvDGaHIrtLLlTfFyr~m~~LIe~G~vyiA~PPLYkv~ 538 (635)
T COG0187 460 DKILKNEEIQTIITALGTGIGK-DFDLEKLRYHKIIIMTDADVDGAHIRTLLLTFFYRYMPPLIENGHVYIAQPPLYKVK 538 (635)
T ss_pred hhhhhhHHHHHHHHHhCCCCCC-CCChhhCccCcEEEEecCCCChHHHHHHHHHHHHHHhHHHHHcCcEEEEcCceEEEE
Confidence 9999999999999999999995 599999999999999999999999999999999999999999999999999999999
Q ss_pred eCCcceeecCHHHHHHHHHHhhcccceEeecCCCCccChHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHhcccCCCC
Q psy13357 573 YGNNECYLRDDIEEERYMLKIAFKNVKLISIENGDIIKENYFFKLIDKYNKTIEIVHRLKQIIDISILSAIMSDVILNLD 652 (833)
Q Consensus 573 ~gk~~~y~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 652 (833)
+||++.|+|||.|+++.+.+
T Consensus 539 ~~k~~~Y~~~d~E~~~~~~~------------------------------------------------------------ 558 (635)
T COG0187 539 KGKKTFYAYDDEELEKLLER------------------------------------------------------------ 558 (635)
T ss_pred cCCceeEeCCHHHHHHHHHH------------------------------------------------------------
Confidence 99999999999997765431
Q ss_pred ChHHHHHHHHHHHHHhccCCeEEEEEeecccceEEEEEEEeeCceeeEEecccccCCHHHHHHHHHHHHHHhhhcCCeEE
Q psy13357 653 TRENAEQFAKKIIKKLNDSNIEIIVEFDQLNNKYLLNIKKKFLKKKNYIIDINFINNKDYKKLVSIISTFKKIIGKGVII 732 (833)
Q Consensus 653 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (833)
+
T Consensus 559 ---------------~---------------------------------------------------------------- 559 (635)
T COG0187 559 ---------------L---------------------------------------------------------------- 559 (635)
T ss_pred ---------------h----------------------------------------------------------------
Confidence 0
Q ss_pred EcccccccceeeecCHHHHHHHHHHhccCCccceeeccCCCCCccchhhhccCcCceeEEeeeeccHHHHHHHHHHhcCC
Q psy13357 733 QKSIGEKIKKYTANNFYKIINYLRNEAENMVIKQRYKGLGEMNPGQLWETTMNPMIRCLLKVKIKDAISADKIFMTLMGD 812 (833)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iqRyKGLGEMn~~qLweTtm~P~~R~l~~v~i~da~~a~~~f~~LMG~ 812 (833)
. + . ++++||||||||||||+|||||||||++|+|+||+|+||++||++|++||||
T Consensus 560 -----~--~-----------------~-~~~~IqRyKGLGEMnp~QLwETTmdP~~R~L~~V~i~da~~ad~~f~~LMGd 614 (635)
T COG0187 560 -----G--K-----------------K-KGYEIQRYKGLGEMNPDQLWETTMDPETRRLLQVTIEDADEADEIFSTLMGD 614 (635)
T ss_pred -----c--c-----------------c-CCceeEeecccCCCCHHHHHHhccCccceeEEEEEcccHHHHHHHHHHHcCC
Confidence 0 0 1 4689999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhhccccCCC
Q psy13357 813 NVELRRKFIELNALHAKNIDI 833 (833)
Q Consensus 813 ~v~~Rr~fI~~~a~~~~~ldi 833 (833)
+|+|||+||++||+++.++||
T Consensus 615 ~ve~Rr~fIe~na~~~~~~di 635 (635)
T COG0187 615 KVEPRRNFIEENALFVENLDI 635 (635)
T ss_pred CchHHHHHHHHHhhhhhhccC
Confidence 999999999999999999997
|
|
| >PRK14939 gyrB DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >PTZ00109 DNA gyrase subunit b; Provisional | Back alignment and domain information |
|---|
| >TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive | Back alignment and domain information |
|---|
| >PRK05559 DNA topoisomerase IV subunit B; Reviewed | Back alignment and domain information |
|---|
| >PRK05644 gyrB DNA gyrase subunit B; Validated | Back alignment and domain information |
|---|
| >TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial | Back alignment and domain information |
|---|
| >TIGR01059 gyrB DNA gyrase, B subunit | Back alignment and domain information |
|---|
| >PHA02569 39 DNA topoisomerase II large subunit; Provisional | Back alignment and domain information |
|---|
| >smart00433 TOP2c TopoisomeraseII | Back alignment and domain information |
|---|
| >PTZ00108 DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >PLN03128 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >PLN03237 DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >KOG0355|consensus | Back alignment and domain information |
|---|
| >cd03366 TOPRIM_TopoIIA_GyrB TOPRIM_TopoIIA_GyrB: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to the Escherichia coli GyrB subunit | Back alignment and domain information |
|---|
| >cd01030 TOPRIM_TopoIIA_like TOPRIM_TopoIIA_like: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >cd03365 TOPRIM_TopoIIA TOPRIM_TopoIIA: topoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase domain of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topoisomerase II | Back alignment and domain information |
|---|
| >cd00822 TopoII_Trans_DNA_gyrase TopoIIA_Trans_DNA_gyrase: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to the B subunits of E | Back alignment and domain information |
|---|
| >PF00204 DNA_gyraseB: DNA gyrase B; InterPro: IPR013506 DNA topoisomerases regulate the number of topological links between two DNA strands (i | Back alignment and domain information |
|---|
| >PF00986 DNA_gyraseB_C: DNA gyrase B subunit, carboxyl terminus The Prosite motif does not match this Pfam entry | Back alignment and domain information |
|---|
| >cd03481 TopoIIA_Trans_ScTopoIIA TopoIIA_Trans_ScTopoIIA: Transducer domain, having a ribosomal S5 domain 2-like fold, of the type found in proteins of the type IIA family of DNA topoisomerases similar to Saccharomyces cerevisiae Topo IIA | Back alignment and domain information |
|---|
| >PRK00095 mutL DNA mismatch repair protein; Reviewed | Back alignment and domain information |
|---|
| >TIGR01052 top6b DNA topoisomerase VI, B subunit | Back alignment and domain information |
|---|
| >COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK04184 DNA topoisomerase VI subunit B; Validated | Back alignment and domain information |
|---|
| >TIGR00585 mutl DNA mismatch repair protein MutL | Back alignment and domain information |
|---|
| >PRK14867 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK14868 DNA topoisomerase VI subunit B; Provisional | Back alignment and domain information |
|---|
| >PRK14939 gyrB DNA gyrase subunit B; Provisional | Back alignment and domain information |
|---|
| >PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase | Back alignment and domain information |
|---|
| >KOG1978|consensus | Back alignment and domain information |
|---|
| >PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >KOG1979|consensus | Back alignment and domain information |
|---|
| >PRK05218 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B | Back alignment and domain information |
|---|
| >cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins | Back alignment and domain information |
|---|
| >PRK14083 HSP90 family protein; Provisional | Back alignment and domain information |
|---|
| >KOG1977|consensus | Back alignment and domain information |
|---|
| >cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins | Back alignment and domain information |
|---|
| >PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional | Back alignment and domain information |
|---|
| >smart00387 HATPase_c Histidine kinase-like ATPases | Back alignment and domain information |
|---|
| >COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
| >PTZ00130 heat shock protein 90; Provisional | Back alignment and domain information |
|---|
| >PF13581 HATPase_c_2: Histidine kinase-like ATPase domain | Back alignment and domain information |
|---|
| >PRK04069 serine-protein kinase RsbW; Provisional | Back alignment and domain information |
|---|
| >PRK15053 dpiB sensor histidine kinase DpiB; Provisional | Back alignment and domain information |
|---|
| >COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL | Back alignment and domain information |
|---|
| >PRK11086 sensory histidine kinase DcuS; Provisional | Back alignment and domain information |
|---|
| >TIGR01925 spIIAB anti-sigma F factor | Back alignment and domain information |
|---|
| >TIGR01386 cztS_silS_copS heavy metal sensor kinase | Back alignment and domain information |
|---|
| >PRK10604 sensor protein RstB; Provisional | Back alignment and domain information |
|---|
| >COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG3920 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK09470 cpxA two-component sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK10549 signal transduction histidine-protein kinase BaeS; Provisional | Back alignment and domain information |
|---|
| >PRK11006 phoR phosphate regulon sensor protein; Provisional | Back alignment and domain information |
|---|
| >TIGR01924 rsbW_low_gc serine-protein kinase RsbW | Back alignment and domain information |
|---|
| >PRK03660 anti-sigma F factor; Provisional | Back alignment and domain information |
|---|
| >PRK10364 sensor protein ZraS; Provisional | Back alignment and domain information |
|---|
| >PRK10337 sensor protein QseC; Provisional | Back alignment and domain information |
|---|
| >PRK09303 adaptive-response sensory kinase; Validated | Back alignment and domain information |
|---|
| >PRK11073 glnL nitrogen regulation protein NR(II); Provisional | Back alignment and domain information |
|---|
| >PRK09467 envZ osmolarity sensor protein; Provisional | Back alignment and domain information |
|---|
| >PRK09835 sensor kinase CusS; Provisional | Back alignment and domain information |
|---|
| >COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10815 sensor protein PhoQ; Provisional | Back alignment and domain information |
|---|
| >TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase | Back alignment and domain information |
|---|
| >TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase | Back alignment and domain information |
|---|
| >PRK10755 sensor protein BasS/PmrB; Provisional | Back alignment and domain information |
|---|
| >COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK11100 sensory histidine kinase CreC; Provisional | Back alignment and domain information |
|---|
| >TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR | Back alignment and domain information |
|---|
| >PRK15347 two component system sensor kinase SsrA; Provisional | Back alignment and domain information |
|---|
| >PRK11466 hybrid sensory histidine kinase TorS; Provisional | Back alignment and domain information |
|---|
| >PRK11644 sensory histidine kinase UhpB; Provisional | Back alignment and domain information |
|---|
| >PRK11360 sensory histidine kinase AtoS; Provisional | Back alignment and domain information |
|---|
| >PRK13837 two-component VirA-like sensor kinase; Provisional | Back alignment and domain information |
|---|
| >PRK10600 nitrate/nitrite sensor protein NarX; Provisional | Back alignment and domain information |
|---|
| >PRK10490 sensor protein KdpD; Provisional | Back alignment and domain information |
|---|
| >PRK13560 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >COG4585 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS | Back alignment and domain information |
|---|
| >PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional | Back alignment and domain information |
|---|
| >PRK11091 aerobic respiration control sensor protein ArcB; Provisional | Back alignment and domain information |
|---|
| >COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional | Back alignment and domain information |
|---|
| >PRK11107 hybrid sensory histidine kinase BarA; Provisional | Back alignment and domain information |
|---|
| >PRK10547 chemotaxis protein CheA; Provisional | Back alignment and domain information |
|---|
| >PRK13557 histidine kinase; Provisional | Back alignment and domain information |
|---|
| >PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional | Back alignment and domain information |
|---|
| >COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK13559 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >cd00188 TOPRIM Topoisomerase-primase domain | Back alignment and domain information |
|---|
| >KOG0787|consensus | Back alignment and domain information |
|---|
| >COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >COG4564 Signal transduction histidine kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PRK10935 nitrate/nitrite sensor protein NarQ; Provisional | Back alignment and domain information |
|---|
| >COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms] | Back alignment and domain information |
|---|
| >PF14501 HATPase_c_5: GHKL domain | Back alignment and domain information |
|---|
| >KOG0020|consensus | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 833 | ||||
| 1ei1_A | 391 | Dimerization Of E. Coli Dna Gyrase B Provides A Str | 1e-102 | ||
| 3nuh_B | 420 | A Domain Insertion In E. Coli Gyrb Adopts A Novel F | 1e-82 | ||
| 1kij_A | 390 | Crystal Structure Of The 43k Atpase Domain Of Therm | 4e-60 | ||
| 4duh_A | 220 | Crystal Structure Of 24 Kda Domain Of E. Coli Dna G | 2e-59 | ||
| 1aj6_A | 219 | Novobiocin-resistant Mutant (r136h) Of The N-termin | 7e-59 | ||
| 3g7e_A | 203 | Crystal Structure Of E. Coli Gyrase B Co-Complexed | 6e-56 | ||
| 4hyp_A | 215 | Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To | 9e-56 | ||
| 1kzn_A | 205 | Crystal Structure Of E. Coli 24kda Domain In Comple | 9e-56 | ||
| 3lnu_A | 408 | Crystal Structure Of Pare Subunit Length = 408 | 1e-46 | ||
| 2xco_A | 726 | The 3.1a Crystal Structure Of The Catalytic Core (B | 2e-46 | ||
| 2xco_A | 726 | The 3.1a Crystal Structure Of The Catalytic Core (B | 2e-18 | ||
| 2xcr_B | 726 | The 3.5a Crystal Structure Of The Catalytic Core (B | 2e-46 | ||
| 2xcr_B | 726 | The 3.5a Crystal Structure Of The Catalytic Core (B | 2e-18 | ||
| 4hxz_A | 390 | Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To | 1e-45 | ||
| 1s16_A | 390 | Crystal Structure Of E. Coli Topoisomerase Iv Pare | 9e-44 | ||
| 2xcs_B | 692 | The 2.1a Crystal Structure Of S. Aureus Gyrase Comp | 9e-43 | ||
| 2xcs_B | 692 | The 2.1a Crystal Structure Of S. Aureus Gyrase Comp | 6e-18 | ||
| 4hz5_A | 216 | Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To | 2e-42 | ||
| 4em7_A | 226 | Crystal Structure Of A Topoisomerase Atp Inhibitor | 6e-41 | ||
| 3foe_C | 268 | Structural Insight Into The Quinolone-Dna Cleavage | 1e-37 | ||
| 3foe_C | 268 | Structural Insight Into The Quinolone-Dna Cleavage | 6e-14 | ||
| 3ttz_A | 198 | Crystal Structure Of A Topoisomerase Atpase Inhibit | 8e-34 | ||
| 2zjt_A | 247 | Crystal Structure Of Dna Gyrase B' Domain Sheds Lig | 3e-33 | ||
| 2zjt_A | 247 | Crystal Structure Of Dna Gyrase B' Domain Sheds Lig | 6e-15 | ||
| 3ig0_A | 242 | Crystal Structure Of The Second Part Of The Mycobac | 5e-33 | ||
| 3ig0_A | 242 | Crystal Structure Of The Second Part Of The Mycobac | 8e-15 | ||
| 4gee_A | 215 | Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To | 7e-33 | ||
| 2xkk_A | 767 | Crystal Structure Of Moxifloxacin, Dna, And A. Baum | 4e-32 | ||
| 2xkj_E | 767 | Crystal Structure Of Catalytic Core Of A. Baumannii | 4e-32 | ||
| 4b6c_A | 196 | Structure Of The M. Smegmatis Gyrb Atpase Domain In | 8e-32 | ||
| 3g75_A | 184 | Crystal Structure Of Staphylococcus Aureus Gyrase B | 6e-30 | ||
| 4hz0_A | 213 | Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And To | 6e-30 | ||
| 3fv5_A | 201 | Crystal Structure Of E. Coli Topoisomerase Iv Co-Co | 3e-29 | ||
| 1s14_A | 194 | Crystal Structure Of Escherichia Coli Topoisomerase | 2e-17 | ||
| 3cwv_A | 369 | Crystal Structure Of B-Subunit Of The Dna Gyrase Fr | 4e-14 | ||
| 4fm9_A | 763 | Human Topoisomerase Ii Alpha Bound To Dna Length = | 2e-13 | ||
| 3qx3_A | 803 | Human Topoisomerase Iibeta In Complex With Dna And | 3e-13 | ||
| 4gfh_F | 1099 | Topoisomerase Ii-Dna-Amppnp Complex Length = 1099 | 2e-11 | ||
| 4gfh_A | 1103 | Topoisomerase Ii-Dna-Amppnp Complex Length = 1103 | 3e-11 | ||
| 3l4j_A | 722 | Topoisomerase Ii-Dna Cleavage Complex, Apo Length = | 3e-10 | ||
| 1bgw_A | 793 | Topoisomerase Residues 410-1202 Length = 793 | 4e-09 | ||
| 2rgr_A | 759 | Topoisomerase Iia Bound To G-segment Dna Length = 7 | 4e-09 |
| >pdb|1EI1|A Chain A, Dimerization Of E. Coli Dna Gyrase B Provides A Structural Mechanism For Activating The Atpase Catalytic Center Length = 391 | Back alignment and structure |
|
| >pdb|3NUH|B Chain B, A Domain Insertion In E. Coli Gyrb Adopts A Novel Fold That Plays A Critical Role In Gyrase Function Length = 420 | Back alignment and structure |
| >pdb|1KIJ|A Chain A, Crystal Structure Of The 43k Atpase Domain Of Thermus Thermophilus Gyrase B In Complex With Novobiocin Length = 390 | Back alignment and structure |
| >pdb|4DUH|A Chain A, Crystal Structure Of 24 Kda Domain Of E. Coli Dna Gyrase B In Complex With Small Molecule Inhibitor Length = 220 | Back alignment and structure |
| >pdb|1AJ6|A Chain A, Novobiocin-resistant Mutant (r136h) Of The N-terminal 24 Kda Fragment Of Dna Gyrase B Complexed With Novobiocin At 2.3 Angstroms Resolution Length = 219 | Back alignment and structure |
| >pdb|3G7E|A Chain A, Crystal Structure Of E. Coli Gyrase B Co-Complexed With Inhibitor Length = 203 | Back alignment and structure |
| >pdb|4HYP|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 215 | Back alignment and structure |
| >pdb|1KZN|A Chain A, Crystal Structure Of E. Coli 24kda Domain In Complex With Clorobiocin Length = 205 | Back alignment and structure |
| >pdb|3LNU|A Chain A, Crystal Structure Of Pare Subunit Length = 408 | Back alignment and structure |
| >pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Length = 726 | Back alignment and structure |
| >pdb|2XCO|A Chain A, The 3.1a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Length = 726 | Back alignment and structure |
| >pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna Length = 726 | Back alignment and structure |
| >pdb|2XCR|B Chain B, The 3.5a Crystal Structure Of The Catalytic Core (B'a' Region) Of Staphylococcus Aureus Dna Gyrase Complexed With Gsk299423 And Dna Length = 726 | Back alignment and structure |
| >pdb|4HXZ|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 390 | Back alignment and structure |
| >pdb|1S16|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Pare 43kda Subunit Complexed With Adpnp Length = 390 | Back alignment and structure |
| >pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex With Gsk299423 And Dna Length = 692 | Back alignment and structure |
| >pdb|2XCS|B Chain B, The 2.1a Crystal Structure Of S. Aureus Gyrase Complex With Gsk299423 And Dna Length = 692 | Back alignment and structure |
| >pdb|4HZ5|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity Length = 216 | Back alignment and structure |
| >pdb|4EM7|A Chain A, Crystal Structure Of A Topoisomerase Atp Inhibitor Length = 226 | Back alignment and structure |
| >pdb|3FOE|C Chain C, Structural Insight Into The Quinolone-Dna Cleavage Complex Of Type Iia Topoisomerases Length = 268 | Back alignment and structure |
| >pdb|3FOE|C Chain C, Structural Insight Into The Quinolone-Dna Cleavage Complex Of Type Iia Topoisomerases Length = 268 | Back alignment and structure |
| >pdb|3TTZ|A Chain A, Crystal Structure Of A Topoisomerase Atpase Inhibitor Length = 198 | Back alignment and structure |
| >pdb|2ZJT|A Chain A, Crystal Structure Of Dna Gyrase B' Domain Sheds Lights On The Mechanism For T-Segment Navigation Length = 247 | Back alignment and structure |
| >pdb|2ZJT|A Chain A, Crystal Structure Of Dna Gyrase B' Domain Sheds Lights On The Mechanism For T-Segment Navigation Length = 247 | Back alignment and structure |
| >pdb|3IG0|A Chain A, Crystal Structure Of The Second Part Of The Mycobacterium Tuberculosis Dna Gyrase Reaction Core: The Toprim Domain At 2.1 A Resolution Length = 242 | Back alignment and structure |
| >pdb|3IG0|A Chain A, Crystal Structure Of The Second Part Of The Mycobacterium Tuberculosis Dna Gyrase Reaction Core: The Toprim Domain At 2.1 A Resolution Length = 242 | Back alignment and structure |
| >pdb|4GEE|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 215 | Back alignment and structure |
| >pdb|2XKK|A Chain A, Crystal Structure Of Moxifloxacin, Dna, And A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 | Back alignment and structure |
| >pdb|2XKJ|E Chain E, Crystal Structure Of Catalytic Core Of A. Baumannii Topo Iv (Pare-Parc Fusion Truncate) Length = 767 | Back alignment and structure |
| >pdb|4B6C|A Chain A, Structure Of The M. Smegmatis Gyrb Atpase Domain In Complex With An Aminopyrazinamide Length = 196 | Back alignment and structure |
| >pdb|3G75|A Chain A, Crystal Structure Of Staphylococcus Aureus Gyrase B Co- Complexed With Inhibitor Length = 184 | Back alignment and structure |
| >pdb|4HZ0|A Chain A, Pyrrolopyrimidine Inhibitors Of Dna Gyrase B And Topoisomerase Iv, Part I: Structure Guided Discovery And Optimization Of Dual Targeting Agents With Potent, Broad-spectrum Enzymatic Activity. Length = 213 | Back alignment and structure |
| >pdb|3FV5|A Chain A, Crystal Structure Of E. Coli Topoisomerase Iv Co-Complexed With Inhibitor Length = 201 | Back alignment and structure |
| >pdb|1S14|A Chain A, Crystal Structure Of Escherichia Coli Topoisomerase Iv Pare 24kda Subunit Length = 194 | Back alignment and structure |
| >pdb|3CWV|A Chain A, Crystal Structure Of B-Subunit Of The Dna Gyrase From Myxococcus Xanthus Length = 369 | Back alignment and structure |
| >pdb|4FM9|A Chain A, Human Topoisomerase Ii Alpha Bound To Dna Length = 763 | Back alignment and structure |
| >pdb|3QX3|A Chain A, Human Topoisomerase Iibeta In Complex With Dna And Etoposide Length = 803 | Back alignment and structure |
| >pdb|3L4J|A Chain A, Topoisomerase Ii-Dna Cleavage Complex, Apo Length = 722 | Back alignment and structure |
| >pdb|1BGW|A Chain A, Topoisomerase Residues 410-1202 Length = 793 | Back alignment and structure |
| >pdb|2RGR|A Chain A, Topoisomerase Iia Bound To G-segment Dna Length = 759 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 391 | Back alignment and structure |
|---|
Score = 679 bits (1754), Expect = 0.0
Identities = 214/411 (52%), Positives = 299/411 (72%), Gaps = 22/411 (5%)
Query: 17 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVT 76
+S +SSI++L+GL+AVRKRP MYIGDT DGTGLHH+VFE++DNAIDE+LAG+C +I VT
Sbjct: 2 NSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 61
Query: 77 IYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 136
I++DNS+S+ D+GRGIP I + SAAE++MT LHAGGKF+ NSYK+SGGLHG+
Sbjct: 62 IHADNSVSVQDDGRGIPTGIH----PEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 117
Query: 137 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTK 196
G+S VN LS+ L+L I R KIH + +G+ +P+ + G+T K GT
Sbjct: 118 GVSVVNALSQKLELVIQREGKIHRQIYE------------HGVPQAPLAVTGETEKTGTM 165
Query: 197 IHFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKGGTSGFV 255
+ FW + F+N+ EF YEIL KR+RELSFL++GV I L D+R K++ F ++GG FV
Sbjct: 166 VRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEGGIKAFV 225
Query: 256 SYINKSKLVVHPTIFQAIGNKISEKKNNINIDVSMQWNNSYNENILCFTNNILQVDGGTH 315
Y+NK+K +HP IF S +K+ I ++V++QWN+ + ENI CFTNNI Q DGGTH
Sbjct: 226 EYLNKNKTPIHPNIFY-----FSTEKDGIGVEVALQWNDGFQENIYCFTNNIPQRDGGTH 280
Query: 316 LTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLV 375
L G R+ +TR +N Y+++ + KK+K+ G+D REGL V+S+K+PDPKF+SQTK+KLV
Sbjct: 281 LAGFRAAMTRTLNAYMDKEGYSKKAKVSATGDDAREGLIAVVSVKVPDPKFSSQTKDKLV 340
Query: 376 SSEVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELT 426
SSEV+ VE+ + + L ++L ENP ++K++ KII+AAR+REAAR+ RE+T
Sbjct: 341 SSEVKSAVEQQMNELLAEYLLENPTDAKIVVGKIIDAARAREAARRAREMT 391
|
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 Length = 390 | Back alignment and structure |
|---|
| >3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* Length = 408 | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 Length = 390 | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} Length = 369 | Back alignment and structure |
|---|
| >3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} Length = 420 | Back alignment and structure |
|---|
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* Length = 418 | Back alignment and structure |
|---|
| >4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* Length = 220 | Back alignment and structure |
|---|
| >4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* Length = 226 | Back alignment and structure |
|---|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* Length = 400 | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* Length = 201 | Back alignment and structure |
|---|
| >3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C* Length = 268 | Back alignment and structure |
|---|
| >3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C* Length = 268 | Back alignment and structure |
|---|
| >3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* Length = 198 | Back alignment and structure |
|---|
| >3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* Length = 242 | Back alignment and structure |
|---|
| >3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* Length = 242 | Back alignment and structure |
|---|
| >3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} Length = 803 | Back alignment and structure |
|---|
| >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Length = 767 | Back alignment and structure |
|---|
| >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* Length = 767 | Back alignment and structure |
|---|
| >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* Length = 692 | Back alignment and structure |
|---|
| >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* Length = 692 | Back alignment and structure |
|---|
| >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* Length = 757 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} Length = 621 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 833 | |||
| 4gfh_A | 1177 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 100.0 | |
| 3nuh_B | 420 | DNA gyrase subunit B; topoisomerase, supercoiling, | 100.0 | |
| 3lnu_A | 408 | Topoisomerase IV subunit B; PARE, ATP-binding, nuc | 100.0 | |
| 1ei1_A | 391 | DNA gyrase B, GYRB; ATPase domain, dimer, isomeras | 100.0 | |
| 1s16_A | 390 | Topoisomerase IV subunit B; two-domain protein com | 100.0 | |
| 1kij_A | 390 | DNA gyrase subunit B; topoisomerase, gyrase B-coum | 100.0 | |
| 3k9f_C | 268 | DNA topoisomerase 4 subunit B; quinolone, topoisom | 100.0 | |
| 1pvg_A | 418 | DNA topoisomerase II; GHKL ATPase domain; HET: DNA | 100.0 | |
| 1zxm_A | 400 | TOPO IIA ATPase, DNA topoisomerase II, alpha isozy | 100.0 | |
| 3m4i_A | 242 | DNA gyrase subunit B; GYRB, toprim, type II topois | 100.0 | |
| 3cwv_A | 369 | DNA gyrase, B subunit, truncated; structural genom | 100.0 | |
| 2xkj_E | 767 | Topoisomerase IV; type IIA topoisomerase; 2.20A {A | 100.0 | |
| 3l4j_A | 757 | DNA topoisomerase 2; topoisomerase, protein-DNA co | 100.0 | |
| 3qx3_A | 803 | DNA topoisomerase 2-beta; toprim domain, winged-he | 100.0 | |
| 2xcs_B | 692 | DNA gyrase subunit B, DNA gyrase subunit A; isomer | 100.0 | |
| 4duh_A | 220 | DNA gyrase subunit B; structure-based drug design, | 100.0 | |
| 4emv_A | 226 | DNA topoisomerase IV, B subunit; protein-inhibitor | 100.0 | |
| 3ttz_A | 198 | DNA gyrase subunit B; protein-inhibitor complex, A | 100.0 | |
| 3fv5_A | 201 | DNA topoisomerase 4 subunit B; topoisomerase IV B | 100.0 | |
| 2q2e_B | 621 | Type 2 DNA topoisomerase 6 subunit B; DNA-binding, | 100.0 | |
| 2zbk_B | 530 | Type 2 DNA topoisomerase 6 subunit B; DNA binding | 99.94 | |
| 3na3_A | 348 | DNA mismatch repair protein MLH1; MUTL protein hom | 99.92 | |
| 1b63_A | 333 | MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A | 99.92 | |
| 3h4l_A | 367 | DNA mismatch repair protein PMS1; ATP binding, DNA | 99.91 | |
| 1h7s_A | 365 | PMS1 protein homolog 2; DNA repair, GHL ATPase, mi | 99.87 | |
| 1mu5_A | 471 | Type II DNA topoisomerase VI subunit B; GHKL ATPas | 99.75 | |
| 3t0h_A | 228 | Heat shock protein HSP 90-alpha; chaperone, ATPase | 98.9 | |
| 2ior_A | 235 | Chaperone protein HTPG; heat shock protein, HSP90; | 98.86 | |
| 3o0i_A | 256 | HSP90AA1 protein; HSP90 heat-shock proteins, chape | 98.81 | |
| 2wer_A | 220 | ATP-dependent molecular chaperone HSP82; ATPase, A | 98.8 | |
| 1y4s_A | 559 | Chaperone protein HTPG; HSP90, molecular chaperone | 98.77 | |
| 1yc1_A | 264 | HSP 86, heat shock protein HSP 90-alpha; cell-cycl | 98.69 | |
| 2ioq_A | 624 | Chaperone protein HTPG; heat shock protein, HSP90; | 98.68 | |
| 2gqp_A | 236 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 98.68 | |
| 3nmq_A | 239 | Heat shock protein HSP 90-beta; ATPase, chaperone- | 98.54 | |
| 1qy5_A | 269 | Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: N | 98.4 | |
| 3peh_A | 281 | Endoplasmin homolog; structural genomics, structur | 98.38 | |
| 2cg9_A | 677 | ATP-dependent molecular chaperone HSP82; chaperone | 98.3 | |
| 2o1u_A | 666 | Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, | 98.23 | |
| 3ied_A | 272 | Heat shock protein; HSP90, chaperone, structural g | 97.91 | |
| 1th8_A | 145 | Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-s | 97.82 | |
| 1id0_A | 152 | PHOQ histidine kinase; PHOQ/PHOP, signal transduct | 97.57 | |
| 3jz3_A | 222 | Sensor protein QSEC; helix-turn-helix, kinase doma | 97.55 | |
| 3a0y_A | 152 | Sensor protein; ATP-LID, kinase, phosphoprotein, t | 97.53 | |
| 1bxd_A | 161 | ENVZ(290-450), protein (osmolarity sensor protein | 97.51 | |
| 3sl2_A | 177 | Sensor histidine kinase YYCG; ATP binding, intact | 97.45 | |
| 1ysr_A | 150 | Sensor-type histidine kinase PRRB; ATP-binding dom | 97.43 | |
| 1r62_A | 160 | Nitrogen regulation protein NR(II); PII, histidine | 97.28 | |
| 2e0a_A | 394 | Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP | 97.27 | |
| 3zxo_A | 129 | Redox sensor histidine kinase response regulator; | 97.24 | |
| 1gkz_A | 388 | [3-methyl-2-oxobutanoate dehydrogenase [lipoamide] | 97.24 | |
| 4ew8_A | 268 | Sensor protein DIVL; signal transduction, two-comp | 97.18 | |
| 2c2a_A | 258 | Sensor histidine kinase; phosphotransfer, PHOQ, se | 97.17 | |
| 3ehg_A | 128 | Sensor kinase (YOCF protein); GHL ATPase domain, t | 97.11 | |
| 2q8g_A | 407 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 97.07 | |
| 1y8o_A | 419 | [pyruvate dehydrogenase [lipoamide]] kinase isozy; | 97.03 | |
| 2btz_A | 394 | Pyruvate dehydrogenase kinase isoenzyme 2; GHKL mo | 97.0 | |
| 3a0r_A | 349 | Sensor protein; four helix bundle, PAS fold, kinas | 97.0 | |
| 3zxq_A | 124 | Hypoxia sensor histidine kinase response regulato; | 96.9 | |
| 1i58_A | 189 | Chemotaxis protein CHEA; beta-alpha sandwich, sign | 96.9 | |
| 3ehh_A | 218 | Sensor kinase (YOCF protein); four-helix bundle, G | 96.73 | |
| 3d36_A | 244 | Sporulation kinase B; GHKL ATPase, four helix bund | 96.65 | |
| 1b3q_A | 379 | Protein (chemotaxis protein CHEA); histine kinase, | 96.14 | |
| 3ke6_A | 399 | Protein RV1364C/MT1410; anti-sigma factor, anti-si | 96.0 | |
| 4fpp_A | 247 | Phosphotransferase; four helix bundle, bergerat fo | 94.93 |
| >4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-168 Score=1545.14 Aligned_cols=538 Identities=24% Similarity=0.373 Sum_probs=448.7
Q ss_pred CCCCCccCceeccchhhhhhCCCeeeecCCCc----------------------CchhHHHHHHHHHHHhhhcCCC-CCe
Q psy13357 16 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDG----------------------TGLHHLVFEILDNAIDESLAGY-CTK 72 (833)
Q Consensus 16 ~~~Y~~~~I~vLeglE~VRkRPgMYIGst~~~----------------------~GL~hlv~EIVdNsiDE~~aG~-~~~ 72 (833)
+..|.+++||+|+||||||||||||||||++. +|||||||||||||+||+++|+ |+.
T Consensus 4 ~~~~~~~~yq~L~~LE~VrkRPgMYIGst~~~~~~~~v~~~~~~~~~~~~vt~v~GL~hl~~EildNsiDea~ag~~~~~ 83 (1177)
T 4gfh_A 4 EPVSASDKYQKISQLEHILKRPDTYIGSVETQEQLQWIYDEETDCMIEKNVTIVPGLFKIFDEILVNAADNKVRDPSMKR 83 (1177)
T ss_dssp ---CHHHHSEECCHHHHHHHCGGGTTCCCSCEEEEEEEEETTTTEEEEEEEEECHHHHHHHHHHHHHHHHHHHHCTTCCE
T ss_pred CCCchhhcccccccchhhhcCCCCccccCCCCCcceeeeeccccccccccccccceeeeEeeEEEEChHhHHhhCCCCCe
Confidence 34577889999999999999999999999873 3999999999999999999997 699
Q ss_pred EEEEEec-CCeEEEEECCCCcccccccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEE
Q psy13357 73 INVTIYS-DNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLT 151 (833)
Q Consensus 73 I~V~I~~-DgsIsV~DnGrGIPv~~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Ve 151 (833)
|.|+||. ||||||+||||||||++||+ +|+|+||+|||+||||||||+++|++||||||||+|||||||++|.|+
T Consensus 84 I~V~i~~~d~sisV~DnGRGIPvd~h~~----~~~~~~Evv~t~LhAGgKFd~~~ykvSGGLHGVG~svVNALS~~~~ve 159 (1177)
T 4gfh_A 84 IDVNIHAEEHTIEVKNDGKGIPIEIHNK----ENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILE 159 (1177)
T ss_dssp EEEEEETTTTEEEEEECSSCCCCSBCTT----TCSBHHHHHHHSSSEESCCCCSSCCCCSCCSSCHHHHHHHTEEEEEEE
T ss_pred EEEEEECCCCEEEEEecCCcccccccCC----CCCEeeeeeccccccccCcCCCCCeEeccCCChhhhHHhhcCCceEEE
Confidence 9999995 99999999999999999998 999999999999999999999999999999999999999999999998
Q ss_pred EE--eCCeEEEEEEEcccccccccccccccccCCceEecc--CCCCccEEEEEeCccccccccccHHHHHHHHHHhhccC
Q psy13357 152 IN--RNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGD--TNKQGTKIHFWVDEKIFSNIEFHYEILKKRIRELSFLN 227 (833)
Q Consensus 152 v~--r~Gk~y~q~f~~G~~~~~~~~~~~~~~~~~l~~~g~--~~~~GT~V~F~PD~~iF~~~~~~~~~l~~RlrelA~Ln 227 (833)
|. |+|+.|+|+|++| .++.++..++. ..++||+|+||||++||++..|+++++..|++++|+||
T Consensus 160 v~~~r~Gk~y~q~f~~g------------~~~~~~~~i~~~~~~~tGT~V~F~PD~~iF~~~~~~~d~l~~~~r~~~~l~ 227 (1177)
T 4gfh_A 160 TADLNVGQKYVQKWENN------------MSICHPPKITSYKKGPSYTKVTFKPDLTRFGMKELDNDILGVMRRRVYDIN 227 (1177)
T ss_dssp EEETTTTEEEEEEEETT------------TTEECCCEEEECCSSCCCEEEEEEECHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred EEEEcCCEEEEEEEECC------------cccCCCCeeecCCCCCCceEEEEEeCHHhcCCcEeCHHHHHHHHHHHHHhc
Confidence 85 8999999999999 55544444443 34689999999999999999999999999999999988
Q ss_pred CC---cEEEEeecccceEEEEEeCCCcchhhhhhhcCCCccCCc-------eEEEeeccccccCCceEEEEeeeecCCCc
Q psy13357 228 NG---VCITLIDERIKKKEIFEFKGGTSGFVSYINKSKLVVHPT-------IFQAIGNKISEKKNNINIDVSMQWNNSYN 297 (833)
Q Consensus 228 pG---l~I~l~der~~~~~~f~~~~Gl~~fv~~l~~~k~~l~~~-------~i~~~~e~~~~~~~~i~veval~~~d~~~ 297 (833)
+| +.+.+++++. ..++|++|+.+|+++++..+...+.. +..+..+. .+..||||++|++++.
T Consensus 228 ~~~~~~~~~~~g~~~---~~~~f~~gi~~y~~~l~~~~~~~~~~~~~~~~~~~~~~~e~-----~~~~~eva~~~~d~~~ 299 (1177)
T 4gfh_A 228 GSVRDINVYLNGKSL---KIRNFKNYVELYLKSLEKKRQLDNGEDGAAKSDIPTILYER-----INNRWEVAFAVSDISF 299 (1177)
T ss_dssp HHSSSCEEEESSCBC---CCCSHHHHHGGGTTTC-----------------CCSCEEEE-----EETTEEEEEEECSSSC
T ss_pred CCCceEEEEecCCee---EEeeccchhhhhhhhhccceeccccccccccCCCceEEEEe-----ccceEEEeecccCCcc
Confidence 55 6678887764 46889999999999987655433321 11111222 3466999999998764
Q ss_pred ceeEEeecceeccCCcchHHHHHHHHHHHHHHHHHHcccccccCCCCCHHHHhhcceeEEEEeecCCCCCcccccccccc
Q psy13357 298 ENILCFTNNILQVDGGTHLTGLRSGITRAINKYIEENEFLKKSKIEIIGEDIREGLTCVLSIKIPDPKFNSQTKNKLVSS 377 (833)
Q Consensus 298 e~i~SFVN~I~T~~GGTHv~gf~~altr~in~y~~~~~l~Kk~k~~l~~~DIregL~avIsvki~nP~FegQTK~kL~n~ 377 (833)
.++||||+|+|++||||++||++||+++||+|+.+ +++.+++++|||+||+|||||+++||||+||||+||+|+
T Consensus 300 -~~~SFvN~I~T~~GGTHv~gfr~altr~in~~~~k-----~~~~~~~~~DIregl~avISvki~~PqFegQTK~kL~s~ 373 (1177)
T 4gfh_A 300 -QQISFVNSIATTMGGTHVNYITDQIVKKISEILKK-----KKKKSVKSFQIKNNMFIFINCLIENPAFTSQTKEQLTTR 373 (1177)
T ss_dssp -EEEEEESSCEETTEEHHHHHHHHHHHHHHHHHHHH-----HSSSCCCHHHHHTTEEEEEEECCSSCCBSSTTCCEECCC
T ss_pred -eeeeeeeeeecCCCchHHHHHHHHHHHHHHHHhhh-----hccccCCHHHHhCCceEEEEeeeccCccccchhhhhcCc
Confidence 46799999999999999999999999999999864 334579999999999999999999999999999999998
Q ss_pred ccchhhHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHHHHHHHhHHhhhcccccccccccccccccC---CCCCCceEE
Q psy13357 378 EVRKPVEEIIIKTLFDFLQENPGESKLICEKIIEAARSREAARKTRELTRKKNLIDDIELSTKLADCQ---EKNPELCEL 454 (833)
Q Consensus 378 ev~~~v~~~v~~~l~~~l~~np~~ak~Ii~ki~~~a~ar~aa~kar~~~r~k~~~~~~~lpgKL~dc~---~kd~~~~eL 454 (833)
.....+...+. ..|+. +.....|+++++++|++|+++++++...++|+.+ .++| ||+||+ ++||++|||
T Consensus 374 ~~~~~~~~~~~---~~~~~--~~~~~~i~~~~~~~a~~~~~~~~~k~~~~~k~~~--~~~~-KL~d~~~~~skd~~~~EL 445 (1177)
T 4gfh_A 374 VKDFGSRCEIP---LEYIN--KIMKTDLATRMFEIADANEENALKKSDGTRKSRI--TNYP-KLEDANKAGTKEGYKCTL 445 (1177)
T ss_dssp GGGSSSCCCCC---HHHHH--HHTTSHHHHHHHHHHTTCC------------CCC--CSCT-TCBCCTTTTTTTTTTCEE
T ss_pred hhcceeeccch---HHHhh--hhhhHHHHHHHHHHHHHHHHHHHHhhhhhcchhh--cccc-ccccccccCCCCccceEE
Confidence 55433322111 12332 2233468888888888877666666655555543 2344 888887 689999999
Q ss_pred EEeecCCCcccccccc---CCcceeecccCcccccccccchhHhhccHhHHHHHHHhCCCCCCCCCCcCCCCCCceeecc
Q psy13357 455 YIVEGDSAGGSVKQGR---DRRFQAVLPLRGKVLNIEKARFEKIILSEQITTLISTLGIGIEQDEFNLEKLRYHRIIIMT 531 (833)
Q Consensus 455 flvEGDSAgGsak~gR---dr~~qailPLrGKiLNv~ka~~~ki~~N~Ei~~li~alG~g~~~~~~~~~~LRY~kIiImT 531 (833)
|||||||||||||+|| +|+|||||||||||||||||+.+||++|+||++|++|||||+|++.+|+++||||||||||
T Consensus 446 fiVEGDSAgGsAk~Grak~~Rd~QAIlPLRGKiLNv~ka~~~kil~N~EI~~ii~alG~g~g~~~~d~~~LRY~KIiIMT 525 (1177)
T 4gfh_A 446 VLTEGDSALSLAVAGLAVVGRDYYGCYPLRGKMLNVREASADQILKNAEIQAIKKIMGLQHRKKYEDTKSLRYGHLMIMT 525 (1177)
T ss_dssp EEEEHHHHHHHHHHHHHHHCSTTEEEEEECSSCCCCTTCCHHHHHHCHHHHHHHHHTTCCCSSCCCCGGGSSCSEEEEEC
T ss_pred EEecCCchhhhHhhcccccCcccEEecccCceechhhhhHHHHHhhcHHHHHHHHHhCCCcCcccCccccCCCCeEEEee
Confidence 9999999999999999 8999999999999999999999999999999999999999999654599999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHhcHhhhh-cCcEEEEcCcEEEEEeCC---cceeecCHHHHHHHHH
Q psy13357 532 DADIDGAHIRALLLTFFYRKMPKLIE-YGYIYIAQPPLYKIKYGN---NECYLRDDIEEERYML 591 (833)
Q Consensus 532 DADvDGsHI~~Llltff~r~~p~Li~-~G~vyia~pPLykv~~gk---~~~y~~~~~e~~~~~~ 591 (833)
||||||+|||||||||||||||+||+ +||||+|+||||||+.|| ...|||+++|+++|..
T Consensus 526 DADvDGsHIrtLLltfF~r~~p~Lie~~G~vyia~pPLykv~~~k~~k~~~~~y~~~e~e~~~~ 589 (1177)
T 4gfh_A 526 DQDHDGSHIKGLIINFLESSFPGLLDIQGFLLEFITPIIKVSITKPTKNTIAFYNMPDYEKWRE 589 (1177)
T ss_dssp CSSHHHHHHHHHHHHHHHHHSTTSTTSTTCEEEECCCSEEEEECSSSCCEEEESSHHHHHHHHH
T ss_pred cCCCCcchHHHHHHHHHHHhChhhEeeCCEEEEEecceEEEEEecCCcceEEEechHHHHHHHH
Confidence 99999999999999999999999999 899999999999998654 4579999999999864
|
| >3nuh_B DNA gyrase subunit B; topoisomerase, supercoiling, specialization, isomera; HET: DNA; 3.10A {Escherichia coli} | Back alignment and structure |
|---|
| >3lnu_A Topoisomerase IV subunit B; PARE, ATP-binding, nucleotide-BI topoisomerase; 2.20A {Xanthomonas oryzae PV} PDB: 3lps_A* | Back alignment and structure |
|---|
| >1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >1kij_A DNA gyrase subunit B; topoisomerase, gyrase B-coumarin complex, isomerase; HET: DNA NOV; 2.30A {Thermus thermophilus} SCOP: d.14.1.3 d.122.1.2 | Back alignment and structure |
|---|
| >3k9f_C DNA topoisomerase 4 subunit B; quinolone, topoisomerase, protein-DNA cleavage complex; HET: DNA LFX; 2.90A {Streptococcus pneumoniae} PDB: 3fof_C* 3foe_C* 3ksa_C* 3ksb_C* 3ltn_C* 3rad_C* 3rae_C* 3raf_C* | Back alignment and structure |
|---|
| >1pvg_A DNA topoisomerase II; GHKL ATPase domain; HET: DNA ANP; 1.80A {Saccharomyces cerevisiae} SCOP: d.14.1.3 d.122.1.2 PDB: 1qzr_A* | Back alignment and structure |
|---|
| >1zxm_A TOPO IIA ATPase, DNA topoisomerase II, alpha isozyme; GHKL nucleotide-binding fold; HET: DNA ANP; 1.87A {Homo sapiens} PDB: 1zxn_A* | Back alignment and structure |
|---|
| >3m4i_A DNA gyrase subunit B; GYRB, toprim, type II topoisomerase, tuberculosi quinolone binding site, DNA binding site, ATP-binding; HET: DNA; 1.95A {Mycobacterium tuberculosis} PDB: 3ig0_A* 2zjt_A* | Back alignment and structure |
|---|
| >3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus} | Back alignment and structure |
|---|
| >2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A* | Back alignment and structure |
|---|
| >3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A* | Back alignment and structure |
|---|
| >3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A* | Back alignment and structure |
|---|
| >2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A* | Back alignment and structure |
|---|
| >4duh_A DNA gyrase subunit B; structure-based drug design, antibacterial, DNA gyrase B, GY isomerase-isomerase inhibitor complex; HET: DNA RLI; 1.50A {Escherichia coli} PDB: 1aj6_A* 1kzn_A* 3g7e_A* | Back alignment and structure |
|---|
| >4emv_A DNA topoisomerase IV, B subunit; protein-inhibitor complex, ATP binding, structure-based drug antimicrobial, virtual screen; HET: DNA 0R9; 1.70A {Streptococcus pneumoniae GA47373} PDB: 4em7_A* | Back alignment and structure |
|---|
| >3ttz_A DNA gyrase subunit B; protein-inhibitor complex, ATP-binding, structure-based drug antimicrobial, isomerase-isomerase inhibitor complex; HET: DNA 07N; 1.63A {Staphylococcus aureus} PDB: 3u2d_A* 3u2k_A* 3g75_A* 3g7b_A* | Back alignment and structure |
|---|
| >3fv5_A DNA topoisomerase 4 subunit B; topoisomerase IV B subunit complex, antibiotic resistance, ATP-binding, nucleotide-binding; HET: DNA 1EU; 1.80A {Escherichia coli} PDB: 1s14_A* | Back alignment and structure |
|---|
| >2q2e_B Type 2 DNA topoisomerase 6 subunit B; DNA-binding, SPO11, ATPase; 4.00A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} | Back alignment and structure |
|---|
| >3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A* | Back alignment and structure |
|---|
| >3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A* | Back alignment and structure |
|---|
| >1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* | Back alignment and structure |
|---|
| >3t0h_A Heat shock protein HSP 90-alpha; chaperone, ATPase; 1.20A {Homo sapiens} SCOP: d.122.1.1 PDB: 3r4m_A 3t0z_A* 3t10_A* 3t1k_A* 3t2s_A* 1uyl_A 1uy7_A* 1uy8_A* 1uy9_A* 1uyc_A* 1uyd_A* 1uye_A* 1uyf_A* 1uyg_A* 1uyh_A* 1uyk_A* 1uy6_A 2cdd_A* 2uwd_A* 2vci_A* ... | Back alignment and structure |
|---|
| >2ior_A Chaperone protein HTPG; heat shock protein, HSP90; HET: ADP; 1.65A {Escherichia coli} | Back alignment and structure |
|---|
| >3o0i_A HSP90AA1 protein; HSP90 heat-shock proteins, chaperone-inhibitor complex; HET: P54; 1.47A {Homo sapiens} PDB: 2fwz_A* 2fwy_A* 2h55_A* | Back alignment and structure |
|---|
| >2wer_A ATP-dependent molecular chaperone HSP82; ATPase, ATP-binding, phosphoprotein, stress respo nucleotide-binding; HET: RDC; 1.60A {Saccharomyces cerevisiae} PDB: 2weq_A* 2wep_A* 1zwh_A* 1zw9_A* 2fxs_A* 3c11_A* 3c0e_A* 2yge_A* 2ygf_A* 2akp_A | Back alignment and structure |
|---|
| >1y4s_A Chaperone protein HTPG; HSP90, molecular chaperone, ATPase; HET: ADP; 2.90A {Escherichia coli} PDB: 1y4u_A | Back alignment and structure |
|---|
| >1yc1_A HSP 86, heat shock protein HSP 90-alpha; cell-cycle, cancer, drug design, cell cycle; HET: 4BC; 1.70A {Homo sapiens} SCOP: d.122.1.1 PDB: 1yc3_A* 1yc4_A* | Back alignment and structure |
|---|
| >2ioq_A Chaperone protein HTPG; heat shock protein, HSP90; 3.50A {Escherichia coli} PDB: 2iop_A | Back alignment and structure |
|---|
| >2gqp_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, ligand, NECA, NPCA, adenosine; HET: PA7 PG4 1PE; 1.50A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1tc0_A* 1tbw_A* 1u0z_A* 1u2o_A* 1ysz_A* 1yt0_A* 1yt1_A* 2exl_A* 2fyp_A* 2gfd_A* 1tc6_A* 2h8m_A* 2hch_A* 2hg1_A* 3o2f_A* 2esa_A* | Back alignment and structure |
|---|
| >3nmq_A Heat shock protein HSP 90-beta; ATPase, chaperone-chaperone inhibitor complex; HET: 7PP; 2.20A {Homo sapiens} SCOP: d.122.1.1 | Back alignment and structure |
|---|
| >1qy5_A Endoplasmin; GRP94, NECA, HSP90, chaperone; HET: NEC; 1.75A {Canis lupus familiaris} SCOP: d.122.1.1 PDB: 1qy8_A* 1qye_A* 1u0y_A* 1yt2_A* | Back alignment and structure |
|---|
| >3peh_A Endoplasmin homolog; structural genomics, structural genomics consortium, SGC, HE protein, chaperone, ATP binding; HET: IBD; 2.75A {Plasmodium falciparum 3D7} PDB: 3pej_A* | Back alignment and structure |
|---|
| >2cg9_A ATP-dependent molecular chaperone HSP82; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2o1u_A Endoplasmin; GRP94, HSP82, HSP90, HTPG, chaperone, AMP-PNP, GP96; HET: ANP; 2.40A {Canis lupus familiaris} PDB: 2o1v_A* 2o1w_A 2o1t_A | Back alignment and structure |
|---|
| >3ied_A Heat shock protein; HSP90, chaperone, structural genomics, structura genomics consortium, SGC, stress response; HET: AN2; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
| >1th8_A Anti-sigma F factor; SPOIIAB, SPOIIAA, anti-ANTI-sigma, sporulation, serine kinase, transcription; HET: ADP; 2.40A {Geobacillus stearothermophilus} SCOP: d.122.1.3 PDB: 1thn_A* 1til_A* 1l0o_A* 1tid_A* | Back alignment and structure |
|---|
| >1id0_A PHOQ histidine kinase; PHOQ/PHOP, signal transduction, transferase; HET: ANP; 1.60A {Escherichia coli} SCOP: d.122.1.3 PDB: 3cgz_A 3cgy_A | Back alignment and structure |
|---|
| >3jz3_A Sensor protein QSEC; helix-turn-helix, kinase domain, ATP-binding, cell inner MEM cell membrane, kinase, membrane, nucleotide-binding; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
| >3a0y_A Sensor protein; ATP-LID, kinase, phosphoprotein, transferase, two-component regulatory system; 1.57A {Thermotoga maritima} PDB: 3a0t_A* 3a0x_A 3a0w_A 3a0z_A | Back alignment and structure |
|---|
| >1bxd_A ENVZ(290-450), protein (osmolarity sensor protein (ENVZ)); histidine kinase, osmosensor, His-Asp phosphorelay system, signal transduction; HET: ANP; NMR {Escherichia coli BL21} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >3sl2_A Sensor histidine kinase YYCG; ATP binding, intact ATP, bergerat fold, TR; HET: ATP; 1.61A {Bacillus subtilis} | Back alignment and structure |
|---|
| >1ysr_A Sensor-type histidine kinase PRRB; ATP-binding domain, structural genomics, mycobacterium tuberculosis structural proteomics project; 1.78A {Mycobacterium tuberculosis} SCOP: d.122.1.3 PDB: 1ys3_A | Back alignment and structure |
|---|
| >1r62_A Nitrogen regulation protein NR(II); PII, histidine kinase, two component system, transfera; 1.60A {Escherichia coli} SCOP: d.122.1.3 | Back alignment and structure |
|---|
| >2e0a_A Pyruvate dehydrogenase kinase isozyme 4; PDK4, ATP-binding, structural genomics, NPPSFA, NATI project on protein structural and functional analyses; HET: ANP; 1.86A {Homo sapiens} PDB: 2zdx_A* 2zdy_A* 2zkj_A* 3d2r_A* | Back alignment and structure |
|---|
| >3zxo_A Redox sensor histidine kinase response regulator; transferase; HET: MSE; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1gkz_A [3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase; transferase, mitochondrial protein kinase, potassium; HET: ADP; 2.2A {Rattus norvegicus} SCOP: a.29.5.1 d.122.1.4 PDB: 1gjv_A 1gkx_A* | Back alignment and structure |
|---|
| >4ew8_A Sensor protein DIVL; signal transduction, two-component regulatory system, hiska GHKL domain, structural genomics; 2.50A {Caulobacter crescentus} | Back alignment and structure |
|---|
| >2c2a_A Sensor histidine kinase; phosphotransfer, PHOQ, selenomethionyl MAD, two-component systems, transferase; HET: ADP; 1.9A {Thermotoga maritima} SCOP: a.30.2.1 d.122.1.3 PDB: 3dge_A* | Back alignment and structure |
|---|
| >3ehg_A Sensor kinase (YOCF protein); GHL ATPase domain, transferase; HET: ATP; 1.74A {Bacillus subtilis} | Back alignment and structure |
|---|
| >2q8g_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; GHKL ATPase/kinase family, pyruvate dehydrogenase complex, mitochondrial kinase; HET: AZX; 1.90A {Homo sapiens} PDB: 2q8f_A* 2q8h_A | Back alignment and structure |
|---|
| >1y8o_A [pyruvate dehydrogenase [lipoamide]] kinase isozy; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: a.29.5.1 d.122.1.4 PDB: 1y8n_A* 1y8p_A* 2pnr_A* 2q8i_A* | Back alignment and structure |
|---|
| >2btz_A Pyruvate dehydrogenase kinase isoenzyme 2; GHKL motif regulation, transferase; 2.2A {Homo sapiens} PDB: 2bu2_A* 2bu5_A* 2bu6_A* 2bu7_A* 2bu8_A* 3crk_A* 1jm6_A* 3crl_A* | Back alignment and structure |
|---|
| >3a0r_A Sensor protein; four helix bundle, PAS fold, kinase, phosphoprotein, transfe two-component regulatory system; 3.80A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3zxq_A Hypoxia sensor histidine kinase response regulato; transferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >1i58_A Chemotaxis protein CHEA; beta-alpha sandwich, signaling protein, transferase; HET: ACP ADP; 1.60A {Thermotoga maritima} SCOP: d.122.1.3 PDB: 1i59_A* 1i5a_A* 1i5b_A* 1i5c_A* 1i5d_A* | Back alignment and structure |
|---|
| >3ehh_A Sensor kinase (YOCF protein); four-helix bundle, GHL ATPase domain, transferase; HET: MSE ADP; 2.10A {Bacillus subtilis} PDB: 3ehj_A* 3gie_A* 3gif_A* 3gig_A* 3ehf_A* | Back alignment and structure |
|---|
| >3d36_A Sporulation kinase B; GHKL ATPase, four helix bundle, class I two-component histidine kinase, phosphoprotein; HET: ADP; 2.03A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
| >1b3q_A Protein (chemotaxis protein CHEA); histine kinase, signal transduction, multi-domai protein, transferase; 2.60A {Thermotoga maritima} SCOP: a.30.2.1 b.40.7.1 d.122.1.3 PDB: 2ch4_A* 3ur1_A | Back alignment and structure |
|---|
| >3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >4fpp_A Phosphotransferase; four helix bundle, bergerat fold, CCKA, CTRA, CPDR, bacterial cytoplasme; 2.20A {Caulobacter crescentus} PDB: 4fmt_A | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 833 | ||||
| d1ei1a2 | 219 | d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli | 4e-75 | |
| d1kija2 | 212 | d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermoph | 5e-62 | |
| d1bjta_ | 760 | e.11.1.1 (A:) DNA topoisomerase II, C-terminal fra | 6e-55 | |
| d1s14a_ | 168 | d.122.1.2 (A:) Topoisomerase IV subunit B {Escheri | 9e-51 | |
| d1ei1a1 | 172 | d.14.1.3 (A:221-392) DNA gyrase B {Escherichia col | 1e-49 | |
| d1kija1 | 172 | d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermop | 4e-41 | |
| d1s16a1 | 167 | d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B | 2e-37 | |
| d1pvga2 | 239 | d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's | 3e-36 | |
| d1pvga1 | 161 | d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's | 7e-22 | |
| d2hkja3 | 219 | d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A | 4e-05 | |
| d1h7sa2 | 203 | d.122.1.2 (A:29-231) DNA mismatch repair protein P | 2e-04 |
| >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} Length = 219 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: DNA gyrase/MutL, N-terminal domain domain: DNA gyrase B species: Escherichia coli [TaxId: 562]
Score = 241 bits (617), Expect = 4e-75
Identities = 124/234 (52%), Positives = 169/234 (72%), Gaps = 17/234 (7%)
Query: 17 SSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVT 76
+S +SSI++L+GL+AVRKRP MYIGDT DGTGLHH+VFE++DNAIDE+LAG+C +I VT
Sbjct: 2 NSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVT 61
Query: 77 IYSDNSISISDNGRGIPIDIKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGI 136
I++DNS+S+ D+GRGIP I + SAAE++MT LHAGGKF+ NSYK+SGGLHG+
Sbjct: 62 IHADNSVSVQDDGRGIPTGI----HPEEGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGV 117
Query: 137 GLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKTINGISVSPIKIIGDTNKQGTK 196
G+S VN LS+ L+L I R KIH + +G+ +P+ + G+T K GT
Sbjct: 118 GVSVVNALSQKLELVIQREGKIHRQIYE------------HGVPQAPLAVTGETEKTGTM 165
Query: 197 IHFWVDEKIFSNI-EFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKG 249
+ FW + F+N+ EF YEIL KR+RELSFL++GV I L D+R K++ F ++G
Sbjct: 166 VRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEG 219
|
| >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Length = 212 | Back information, alignment and structure |
|---|
| >d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 760 | Back information, alignment and structure |
|---|
| >d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Length = 168 | Back information, alignment and structure |
|---|
| >d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]} Length = 172 | Back information, alignment and structure |
|---|
| >d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]} Length = 172 | Back information, alignment and structure |
|---|
| >d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} Length = 167 | Back information, alignment and structure |
|---|
| >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 239 | Back information, alignment and structure |
|---|
| >d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 161 | Back information, alignment and structure |
|---|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219 | Back information, alignment and structure |
|---|
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} Length = 203 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 833 | |||
| d1ei1a2 | 219 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1kija2 | 212 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 100.0 | |
| d1bjta_ | 760 | DNA topoisomerase II, C-terminal fragment (residue | 100.0 | |
| d1pvga2 | 239 | DNA topoisomerase II {Baker's yeast (Saccharomyces | 100.0 | |
| d1s14a_ | 168 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 100.0 | |
| d1ei1a1 | 172 | DNA gyrase B {Escherichia coli [TaxId: 562]} | 100.0 | |
| d1kija1 | 172 | DNA gyrase B {Thermus thermophilus [TaxId: 274]} | 100.0 | |
| d1s16a1 | 167 | Topoisomerase IV subunit B {Escherichia coli [TaxI | 100.0 | |
| d1pvga1 | 161 | DNA topoisomerase II {Baker's yeast (Saccharomyces | 99.91 | |
| d1h7sa2 | 203 | DNA mismatch repair protein PMS2 {Human (Homo sapi | 99.74 | |
| d2hkja3 | 219 | Topoisomerase VI-B subunit {Archaeon Sulfolobus sh | 99.62 | |
| d1b63a2 | 218 | DNA mismatch repair protein MutL {Escherichia coli | 99.6 | |
| d1uyla_ | 208 | HSP90 {Human (Homo sapiens) [TaxId: 9606]} | 98.18 | |
| d2iwxa1 | 213 | HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T | 98.05 | |
| d1ysra1 | 148 | Sensor-type histidine kinase PrrB {Mycobacterium t | 97.78 | |
| d2gqpa1 | 227 | HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | 97.71 | |
| d1bxda_ | 161 | Histidine kinase domain of the osmosensor EnvZ {Es | 97.67 | |
| d1gkza2 | 193 | Branched-chain alpha-ketoacid dehydrogenase kinase | 97.55 | |
| d1jm6a2 | 190 | Pyruvate dehydrogenase kinase {Rat (Rattus norvegi | 97.52 | |
| d1id0a_ | 146 | Histidine kinase PhoQ domain {Escherichia coli [Ta | 97.52 | |
| d1th8a_ | 139 | Anti-sigma factor spoIIab {Bacillus stearothermoph | 97.45 | |
| d2c2aa2 | 161 | Sensor histidine kinase TM0853 {Thermotoga maritim | 97.28 | |
| d1y8oa2 | 125 | Pyruvate dehydrogenase kinase {Human (Homo sapiens | 96.86 | |
| d1ixma_ | 179 | Sporulation response regulatory protein Spo0B {Bac | 96.38 | |
| d1r62a_ | 156 | Nitrogen regulation protein NtrB, C-terminal domai | 95.9 |
| >d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase family: DNA gyrase/MutL, N-terminal domain domain: DNA gyrase B species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.7e-68 Score=550.66 Aligned_cols=218 Identities=57% Similarity=0.955 Sum_probs=209.8
Q ss_pred CCCCCccCceeccchhhhhhCCCeeeecCCCcCchhHHHHHHHHHHHhhhcCCCCCeEEEEEecCCeEEEEECCCCcccc
Q psy13357 16 ESSYSASSIQILEGLEAVRKRPEMYIGDTSDGTGLHHLVFEILDNAIDESLAGYCTKINVTIYSDNSISISDNGRGIPID 95 (833)
Q Consensus 16 ~~~Y~~~~I~vLeglE~VRkRPgMYIGst~~~~GL~hlv~EIVdNsiDE~~aG~~~~I~V~I~~DgsIsV~DnGrGIPv~ 95 (833)
+++|+|++|++|+++|||||||+||||||+..+|||||++||||||+||+++|+|+.|.|+|+.||+|+|+|||||||++
T Consensus 1 ~~~~~~~~i~~L~~lE~Vr~RP~mYiGs~~~~~gl~~l~~Eil~Na~De~~~~~~~~i~v~i~~dgsIsV~ddGrGIPv~ 80 (219)
T d1ei1a2 1 SNSSDSSSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADNSVSVQDDGRGIPTG 80 (219)
T ss_dssp CCCCSGGGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTSCEEEEECSSCCCCS
T ss_pred CCcCCHhhCeeecchhHHHhCCCcEEccCCCcccchhhhHhHhhhhhhhhcCCCccceeEEEcCCCeEEEEECCcccccc
Confidence 36799999999999999999999999999865899999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCCCcceeeeeeeccccCCCCCCcceecCCcccccchhhhhcccceeEEEEeCCeEEEEEEEccccccccccc
Q psy13357 96 IKIDDKHKPKRSAAEIVMTELHAGGKFNKNSYKISGGLHGIGLSCVNGLSRFLQLTINRNKKIHYMEFRYGVLQNRIIKT 175 (833)
Q Consensus 96 ~h~~~~~~~~~~~~E~Vft~LhAGgKFdd~~ykvSgGlhGvG~svvNAlS~~~~Vev~r~Gk~y~q~f~~G~~~~~~~~~ 175 (833)
+||+ +++|+||+|||+||||+|||+++|++|||+||||+|||||||++|+|+++|+|+.|+|+|++|
T Consensus 81 ~h~~----~~~~~~e~if~~l~tg~~fd~~~~~~sgG~nGvG~~~~NalS~~f~v~~~r~g~~y~q~f~~g--------- 147 (219)
T d1ei1a2 81 IHPE----EGVSAAEVIMTVLHAGGKFDDNSYKVSGGLHGVGVSVVNALSQKLELVIQREGKIHRQIYEHG--------- 147 (219)
T ss_dssp BCTT----TSSBHHHHHHHSTTEESCSSSSSCSSCSCCSSCHHHHHHHTEEEEEEEEEETTEEEEEEEETT---------
T ss_pred ccCc----cCCchhhhhhhhhhhccCCCCCcceeEcCccccceeEEEEeeeEEEEEEEECCEEEEEEEeCC---------
Confidence 9998 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCceEeccCCCCccEEEEEeCcccccc-ccccHHHHHHHHHHhhccCCCcEEEEeecccceEEEEEeCC
Q psy13357 176 INGISVSPIKIIGDTNKQGTKIHFWVDEKIFSN-IEFHYEILKKRIRELSFLNNGVCITLIDERIKKKEIFEFKG 249 (833)
Q Consensus 176 ~~~~~~~~l~~~g~~~~~GT~V~F~PD~~iF~~-~~~~~~~l~~RlrelA~LnpGl~I~l~der~~~~~~f~~~~ 249 (833)
.+..|+.+++.++++||+|+|+||+++|.. ..|+++.|.+|++++|||||||+|+|+|+|.++++.|+|+|
T Consensus 148 ---~~~~~~~~~~~~~~~gT~I~F~PD~~iF~~~~~~~~~~l~~R~~dlA~L~~Gl~V~lnder~~~~~~f~~~G 219 (219)
T d1ei1a2 148 ---VPQAPLAVTGETEKTGTMVRFWPSLETFTNVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEG 219 (219)
T ss_dssp ---EESSCCEEEEECSCCEEEEEEEECTTTCCSCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEECCCS
T ss_pred ---eECCCceeccCcCCCCEEEEEEECccccCCcccccHHHHHHHHHHHcccCCCcEEEEEEcCCCcEEEEECCC
Confidence 677888888888999999999999999975 58999999999999999999999999999998889999985
|
| >d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment (residues 410-1202) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ei1a1 d.14.1.3 (A:221-392) DNA gyrase B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1kija1 d.14.1.3 (A:221-392) DNA gyrase B {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
| >d1s16a1 d.14.1.3 (A:1217-1383) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1pvga1 d.14.1.3 (A:246-406) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} | Back information, alignment and structure |
|---|
| >d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
| >d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} | Back information, alignment and structure |
|---|
| >d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
| >d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
| >d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|