Psyllid ID: psy13390

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEANGIKIGPQHSPNNPSLPSGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEVDLVG
Secondary Structure (PSIPRED)
cEEEEEEEcccccccccccHHHHHHHHHHccccEEEccccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEEEEccEEEEEEEEcccccccHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHHHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEEEccccHHHccccHHHHHHHHHHcccEEEEccccccccHHHHHHHHHHHcHHHHccccccccccccccccccccccccccccccccccccEEcEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHcccccccEEEEEEEcccHHHHHcHHHHHHHHHHHcccccEEEEEEEccccHHHccccHHHHHHHHHHHccEEEEcEccccEcHHHHHHHHHHHHHccHccccccccccccccc
Coil and Loop (DISEMBL)
MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFditneangikigpqhspnnpslpsgssgsssgggvefgARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEVDLVG
Flexible Loop (DISEMBL)
mvimlignksdldarrEVKKEEgevfarehglVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEANGIKIGPQHSPNNPSLPSGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEgevfarehglVFMETSAKLATNVEEAFIDTAKEIYEKIQegvfditnevdlvg
Low Complexity Region (SEG)
MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEANGIKIGPQHspnnpslpsgssgsssgggVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEVDLVG
Disordered region (IsUnstruct)
************************VFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEANGI*************************VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGN***************EVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEV****
Disordered Region (DISOPRED)
MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY***********************SPNNPSLPSGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI***************
Disordered Region (DISEMBL)
MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEANGIKIGPQHSPN***************GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEVDLVG
Disordered Region (DISPRO)
MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVF**************HSPNNPSLPSGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE*************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEANGIKIGPQHSPNNPSLPSGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEVDLVG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
P05712	212	Ras-related protein Rab-2	yes	N/A	0.587	0.679	0.916	2e-74
P53994	212	Ras-related protein Rab-2	yes	N/A	0.587	0.679	0.916	2e-74
Q5R6B6	212	Ras-related protein Rab-2	yes	N/A	0.587	0.679	0.916	2e-74
Q4R4X6	212	Ras-related protein Rab-2	N/A	N/A	0.587	0.679	0.916	2e-74
P61019	212	Ras-related protein Rab-2	no	N/A	0.587	0.679	0.916	2e-74
P61105	212	Ras-related protein Rab-2	yes	N/A	0.587	0.679	0.916	2e-74
Q01971	212	Ras-related protein Rab-2	yes	N/A	0.587	0.679	0.916	2e-74
Q90965	212	Ras-related protein Rab-2	yes	N/A	0.587	0.679	0.916	2e-74
Q05975	212	Ras-related protein Rab-2	N/A	N/A	0.587	0.679	0.909	5e-74
Q8WUD1	216	Ras-related protein Rab-2	no	N/A	0.563	0.638	0.854	5e-71

>sp|P05712|RAB2A_RAT Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=1 SV=1

 Score =  279 bits (713), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/144 (91%), Positives = 140/144 (97%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           FI+TAKEIYEKIQEGVFDI NE +
Sbjct: 160 FINTAKEIYEKIQEGVFDINNEAN 183

Required for protein transport from the endoplasmic reticulum to the Golgi complex.
Rattus norvegicus (taxid: 10116)

>sp|P53994|RAB2A_MOUSE Ras-related protein Rab-2A OS=Mus musculus GN=Rab2a PE=1 SV=1

 Score =  278 bits (712), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/144 (91%), Positives = 140/144 (97%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           FI+TAKEIYEKIQEGVFDI NE +
Sbjct: 160 FINTAKEIYEKIQEGVFDINNEAN 183

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Mus musculus (taxid: 10090)

>sp|Q5R6B6|RAB2A_PONAB Ras-related protein Rab-2A OS=Pongo abelii GN=RAB2A PE=2 SV=1

 Score =  278 bits (712), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/144 (91%), Positives = 140/144 (97%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           FI+TAKEIYEKIQEGVFDI NE +
Sbjct: 160 FINTAKEIYEKIQEGVFDINNEAN 183

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Pongo abelii (taxid: 9601)

>sp|Q4R4X6|RAB2A_MACFA Ras-related protein Rab-2A OS=Macaca fascicularis GN=RAB2A PE=2 SV=1

 Score =  278 bits (712), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/144 (91%), Positives = 140/144 (97%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           FI+TAKEIYEKIQEGVFDI NE +
Sbjct: 160 FINTAKEIYEKIQEGVFDINNEAN 183

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Macaca fascicularis (taxid: 9541)

>sp|P61019|RAB2A_HUMAN Ras-related protein Rab-2A OS=Homo sapiens GN=RAB2A PE=1 SV=1

 Score =  278 bits (712), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/144 (91%), Positives = 140/144 (97%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           FI+TAKEIYEKIQEGVFDI NE +
Sbjct: 160 FINTAKEIYEKIQEGVFDINNEAN 183

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Homo sapiens (taxid: 9606)

>sp|P61105|RAB2A_CANFA Ras-related protein Rab-2A OS=Canis familiaris GN=RAB2A PE=1 SV=1

 Score =  278 bits (712), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/144 (91%), Positives = 140/144 (97%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           FI+TAKEIYEKIQEGVFDI NE +
Sbjct: 160 FINTAKEIYEKIQEGVFDINNEAN 183

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Canis familiaris (taxid: 9615)

>sp|Q01971|RAB2A_RABIT Ras-related protein Rab-2A OS=Oryctolagus cuniculus GN=RAB2A PE=2 SV=1

 Score =  278 bits (712), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/144 (91%), Positives = 140/144 (97%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           FI+TAKEIYEKIQEGVFDI NE +
Sbjct: 160 FINTAKEIYEKIQEGVFDINNEAN 183

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q90965|RAB2A_CHICK Ras-related protein Rab-2A OS=Gallus gallus GN=RAB2A PE=2 SV=1

 Score =  278 bits (712), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 132/144 (91%), Positives = 140/144 (97%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           FI+TAKEIYEKIQEGVFDI NE +
Sbjct: 160 FINTAKEIYEKIQEGVFDINNEAN 183

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Gallus gallus (taxid: 9031)

>sp|Q05975|RAB2_LYMST Ras-related protein Rab-2 OS=Lymnaea stagnalis GN=RAB2 PE=2 SV=1

 Score =  277 bits (708), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 131/144 (90%), Positives = 139/144 (96%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDL+ARREVKKEEGE FAREHGL+FMETSAK A NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLEARREVKKEEGEAFAREHGLIFMETSAKTAANVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           FI+TAKEIY+KIQ+GVFDI NE +
Sbjct: 160 FINTAKEIYQKIQDGVFDINNEAN 183

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Lymnaea stagnalis (taxid: 6523)

>sp|Q8WUD1|RAB2B_HUMAN Ras-related protein Rab-2B OS=Homo sapiens GN=RAB2B PE=1 SV=1

 Score =  267 bits (683), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 123/144 (85%), Positives = 137/144 (95%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARM+ IDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRRETFNHLT+
Sbjct: 40  GVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHS+SNMVIMLIGNKSDL++RR+VK+EEGE FAREHGL+FMETSAK A NVEEA
Sbjct: 100 WLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           FI+TAKEIY KIQ+G+FD+ NE +
Sbjct: 160 FINTAKEIYRKIQQGLFDVHNEAN 183

Required for protein transport from the endoplasmic reticulum to the Golgi complex.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
156555012	214	PREDICTED: ras-related protein Rab-2-lik	0.587	0.672	0.944	5e-74
170057342	207	conserved hypothetical protein [Culex qu	0.583	0.690	0.951	7e-74
312382073	182	hypothetical protein AND_05520 [Anophele	0.583	0.785	0.951	7e-74
158294114	213	AGAP005393-PA [Anopheles gambiae str. PE	0.579	0.666	0.937	9e-74
157107937	213	ras-related protein Rab-2A, putative [Ae	0.579	0.666	0.937	9e-74
195331895	200	GM20894 [Drosophila sechellia] gi|194124	0.563	0.69	0.951	9e-74
17137088	213	Rab2, isoform A [Drosophila melanogaster	0.587	0.676	0.937	1e-73
195028532	213	GH21751 [Drosophila grimshawi] gi|195383	0.575	0.661	0.937	1e-73
195120996	213	GI19298 [Drosophila mojavensis] gi|19391	0.587	0.676	0.937	1e-73
125806738	213	GA17076 [Drosophila pseudoobscura pseudo	0.587	0.676	0.937	1e-73

>gi|156555012|ref|XP_001603108.1| PREDICTED: ras-related protein Rab-2-like [Nasonia vitripennis]

 Score =  283 bits (723), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 136/144 (94%), Positives = 139/144 (96%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDLDARREVK+EEGE FAREHGLVFMETSAK A NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLDARREVKREEGEAFAREHGLVFMETSAKTAANVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           FI+TAKEIYEKIQEGVFDI NE +
Sbjct: 160 FINTAKEIYEKIQEGVFDINNEAN 183

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170057342|ref|XP_001864442.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167876764|gb|EDS40147.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 136/143 (95%), Positives = 139/143 (97%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT
Sbjct: 50  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 109

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDLD+RREVKKEEGE FAREHGLVFMETSA+ A NVEEA
Sbjct: 110 WLEDARQHSNSNMVIMLIGNKSDLDSRREVKKEEGEAFAREHGLVFMETSARTAANVEEA 169

Query: 219 FIDTAKEIYEKIQEGVFDITNEV 241
           FI+TAKEIYEKIQEGVFDI NEV
Sbjct: 170 FINTAKEIYEKIQEGVFDINNEV 192

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312382073|gb|EFR27648.1| hypothetical protein AND_05520 [Anopheles darlingi]

 Score =  282 bits (722), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 136/143 (95%), Positives = 139/143 (97%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDLD+RREVKKEEGE FAREHGLVFMETSA+ A NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLDSRREVKKEEGEAFAREHGLVFMETSARTAANVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEV 241
           FI+TAKEIYEKIQEGVFDI NEV
Sbjct: 160 FINTAKEIYEKIQEGVFDINNEV 182

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158294114|ref|XP_556035.3| AGAP005393-PA [Anopheles gambiae str. PEST] gi|157015414|gb|EAL39812.3| AGAP005393-PA [Anopheles gambiae str. PEST]

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 135/144 (93%), Positives = 139/144 (96%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDLD+RREVKKEEGE FAREHGLVFMETSA+ A NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLDSRREVKKEEGEAFAREHGLVFMETSARTAANVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           FI+TAKEIYEKIQEGVFDI NE +
Sbjct: 160 FINTAKEIYEKIQEGVFDINNEAN 183

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157107937|ref|XP_001650005.1| ras-related protein Rab-2A, putative [Aedes aegypti] gi|170056253|ref|XP_001863947.1| conserved hypothetical protein [Culex quinquefasciatus] gi|108879444|gb|EAT43669.1| AAEL004902-PA [Aedes aegypti] gi|167876016|gb|EDS39399.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 135/144 (93%), Positives = 139/144 (96%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDLD+RREVKKEEGE FAREHGLVFMETSA+ A NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLDSRREVKKEEGEAFAREHGLVFMETSARTAANVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           FI+TAKEIYEKIQEGVFDI NE +
Sbjct: 160 FINTAKEIYEKIQEGVFDINNEAN 183

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195331895|ref|XP_002032634.1| GM20894 [Drosophila sechellia] gi|194124604|gb|EDW46647.1| GM20894 [Drosophila sechellia]

 Score =  282 bits (721), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 136/143 (95%), Positives = 139/143 (97%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDLD+RREVKKEEGE FAREHGLVFMETSA+ A NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLDSRREVKKEEGEAFAREHGLVFMETSARTAANVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEV 241
           FI+TAKEIYEKIQEGVFDI NEV
Sbjct: 160 FINTAKEIYEKIQEGVFDINNEV 182

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17137088|ref|NP_477090.1| Rab2, isoform A [Drosophila melanogaster] gi|442622498|ref|NP_001260732.1| Rab2, isoform B [Drosophila melanogaster] gi|194758098|ref|XP_001961299.1| GF11067 [Drosophila ananassae] gi|194864038|ref|XP_001970739.1| GG23219 [Drosophila erecta] gi|195474169|ref|XP_002089364.1| GE19072 [Drosophila yakuba] gi|195580994|ref|XP_002080319.1| GD10420 [Drosophila simulans] gi|2313035|dbj|BAA21706.1| rab2 [Drosophila melanogaster] gi|21645117|gb|AAM70817.1| Rab2, isoform A [Drosophila melanogaster] gi|27820101|gb|AAO25075.1| GH01619p [Drosophila melanogaster] gi|190622597|gb|EDV38121.1| GF11067 [Drosophila ananassae] gi|190662606|gb|EDV59798.1| GG23219 [Drosophila erecta] gi|194175465|gb|EDW89076.1| GE19072 [Drosophila yakuba] gi|194192328|gb|EDX05904.1| GD10420 [Drosophila simulans] gi|220944512|gb|ACL84799.1| Rab2-PA [synthetic construct] gi|220954388|gb|ACL89737.1| Rab2-PA [synthetic construct] gi|440214116|gb|AGB93265.1| Rab2, isoform B [Drosophila melanogaster]

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/144 (93%), Positives = 139/144 (96%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDLD+RREVKKEEGE FAREHGLVFMETSA+ A NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLDSRREVKKEEGEAFAREHGLVFMETSARTAANVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           FI+TAKEIYEKIQEGVFDI NE +
Sbjct: 160 FINTAKEIYEKIQEGVFDINNEAN 183

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195028532|ref|XP_001987130.1| GH21751 [Drosophila grimshawi] gi|195383514|ref|XP_002050471.1| GJ22175 [Drosophila virilis] gi|193903130|gb|EDW01997.1| GH21751 [Drosophila grimshawi] gi|194145268|gb|EDW61664.1| GJ22175 [Drosophila virilis]

 Score =  282 bits (721), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/144 (93%), Positives = 139/144 (96%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDLD+RREVKKEEGE FAREHGLVFMETSA+ A NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLDSRREVKKEEGEAFAREHGLVFMETSARTAANVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           FI+TAKEIYEKIQEGVFDI NE +
Sbjct: 160 FINTAKEIYEKIQEGVFDINNEAN 183

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195120996|ref|XP_002005007.1| GI19298 [Drosophila mojavensis] gi|193910075|gb|EDW08942.1| GI19298 [Drosophila mojavensis]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/144 (93%), Positives = 139/144 (96%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDLD+RREVKKEEGE FAREHGLVFMETSA+ A NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLDSRREVKKEEGEAFAREHGLVFMETSARTAANVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           FI+TAKEIYEKIQEGVFDI NE +
Sbjct: 160 FINTAKEIYEKIQEGVFDINNEAN 183

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125806738|ref|XP_001360146.1| GA17076 [Drosophila pseudoobscura pseudoobscura] gi|195149123|ref|XP_002015507.1| GL11116 [Drosophila persimilis] gi|195455130|ref|XP_002074572.1| GK23088 [Drosophila willistoni] gi|54635317|gb|EAL24720.1| GA17076 [Drosophila pseudoobscura pseudoobscura] gi|194109354|gb|EDW31397.1| GL11116 [Drosophila persimilis] gi|194170657|gb|EDW85558.1| GK23088 [Drosophila willistoni]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/144 (93%), Positives = 139/144 (96%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT
Sbjct: 40  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNMVIMLIGNKSDLD+RREVKKEEGE FAREHGLVFMETSA+ A NVEEA
Sbjct: 100 WLEDARQHSNSNMVIMLIGNKSDLDSRREVKKEEGEAFAREHGLVFMETSARTAANVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           FI+TAKEIYEKIQEGVFDI NE +
Sbjct: 160 FINTAKEIYEKIQEGVFDINNEAN 183

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
FB|FBgn0014009	213	Rab2 "Rab2" [Drosophila melano	0.583	0.671	0.937	1.2e-67
UNIPROTKB|F1N8Z3	197	RAB2A "Ras-related protein Rab	0.583	0.725	0.916	6.5e-67
UNIPROTKB|Q90965	212	RAB2A "Ras-related protein Rab	0.583	0.674	0.916	6.5e-67
UNIPROTKB|G1K288	232	RAB2A "Ras-related protein Rab	0.583	0.616	0.916	6.5e-67
UNIPROTKB|P61105	212	RAB2A "Ras-related protein Rab	0.583	0.674	0.916	6.5e-67
UNIPROTKB|P61019	212	RAB2A "Ras-related protein Rab	0.583	0.674	0.916	6.5e-67
UNIPROTKB|Q01971	212	RAB2A "Ras-related protein Rab	0.583	0.674	0.916	6.5e-67
UNIPROTKB|Q4R4X6	212	RAB2A "Ras-related protein Rab	0.583	0.674	0.916	6.5e-67
UNIPROTKB|Q5R6B6	212	RAB2A "Ras-related protein Rab	0.583	0.674	0.916	6.5e-67
MGI|MGI:1928750	212	Rab2a "RAB2A, member RAS oncog	0.583	0.674	0.916	6.5e-67

FB|FBgn0014009 Rab2 "Rab2" [Drosophila melanogaster (taxid:7227)]

 Score = 687 (246.9 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 134/143 (93%), Positives = 138/143 (96%)

Query:   100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
             VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW
Sbjct:    41 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 100

Query:   160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
             LEDARQHSNSNMVIMLIGNKSDLD+RREVKKEEGE FAREHGLVFMETSA+ A NVEEAF
Sbjct:   101 LEDARQHSNSNMVIMLIGNKSDLDSRREVKKEEGEAFAREHGLVFMETSARTAANVEEAF 160

Query:   220 IDTAKEIYEKIQEGVFDITNEVD 242
             I+TAKEIYEKIQEGVFDI NE +
Sbjct:   161 INTAKEIYEKIQEGVFDINNEAN 183

GO:0003924 "GTPase activity" evidence=ISS;NAS

GO:0005525 "GTP binding" evidence=IEA;NAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0031982 "vesicle" evidence=ISS

UNIPROTKB|F1N8Z3 RAB2A "Ras-related protein Rab-2A" [Gallus gallus (taxid:9031)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 131/143 (91%), Positives = 139/143 (97%)

Query:   100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
             VEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTTW
Sbjct:    26 VEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTW 85

Query:   160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
             LEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEAF
Sbjct:    86 LEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 145

Query:   220 IDTAKEIYEKIQEGVFDITNEVD 242
             I+TAKEIYEKIQEGVFDI NE +
Sbjct:   146 INTAKEIYEKIQEGVFDINNEAN 168

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

UNIPROTKB|Q90965 RAB2A "Ras-related protein Rab-2A" [Gallus gallus (taxid:9031)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 131/143 (91%), Positives = 139/143 (97%)

Query:   100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
             VEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTTW
Sbjct:    41 VEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTW 100

Query:   160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
             LEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEAF
Sbjct:   101 LEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160

Query:   220 IDTAKEIYEKIQEGVFDITNEVD 242
             I+TAKEIYEKIQEGVFDI NE +
Sbjct:   161 INTAKEIYEKIQEGVFDINNEAN 183

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0019003 "GDP binding" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

UNIPROTKB|G1K288 RAB2A "Ras-related protein Rab-2A" [Canis lupus familiaris (taxid:9615)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 131/143 (91%), Positives = 139/143 (97%)

Query:   100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
             VEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTTW
Sbjct:    61 VEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTW 120

Query:   160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
             LEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEAF
Sbjct:   121 LEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 180

Query:   220 IDTAKEIYEKIQEGVFDITNEVD 242
             I+TAKEIYEKIQEGVFDI NE +
Sbjct:   181 INTAKEIYEKIQEGVFDINNEAN 203

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61105 RAB2A "Ras-related protein Rab-2A" [Canis lupus familiaris (taxid:9615)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 131/143 (91%), Positives = 139/143 (97%)

Query:   100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
             VEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTTW
Sbjct:    41 VEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTW 100

Query:   160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
             LEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEAF
Sbjct:   101 LEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160

Query:   220 IDTAKEIYEKIQEGVFDITNEVD 242
             I+TAKEIYEKIQEGVFDI NE +
Sbjct:   161 INTAKEIYEKIQEGVFDINNEAN 183

GO:0005525 "GTP binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

GO:0003924 "GTPase activity" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|P61019 RAB2A "Ras-related protein Rab-2A" [Homo sapiens (taxid:9606)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 131/143 (91%), Positives = 139/143 (97%)

Query:   100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
             VEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTTW
Sbjct:    41 VEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTW 100

Query:   160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
             LEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEAF
Sbjct:   101 LEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160

Query:   220 IDTAKEIYEKIQEGVFDITNEVD 242
             I+TAKEIYEKIQEGVFDI NE +
Sbjct:   161 INTAKEIYEKIQEGVFDINNEAN 183

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0033116 "endoplasmic reticulum-Golgi intermediate compartment membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0019003 "GDP binding" evidence=IDA

GO:0005525 "GTP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=TAS

GO:0006184 "GTP catabolic process" evidence=IDA;TAS

UNIPROTKB|Q01971 RAB2A "Ras-related protein Rab-2A" [Oryctolagus cuniculus (taxid:9986)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 131/143 (91%), Positives = 139/143 (97%)

Query:   100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
             VEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTTW
Sbjct:    41 VEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTW 100

Query:   160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
             LEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEAF
Sbjct:   101 LEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160

Query:   220 IDTAKEIYEKIQEGVFDITNEVD 242
             I+TAKEIYEKIQEGVFDI NE +
Sbjct:   161 INTAKEIYEKIQEGVFDINNEAN 183

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

UNIPROTKB|Q4R4X6 RAB2A "Ras-related protein Rab-2A" [Macaca fascicularis (taxid:9541)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 131/143 (91%), Positives = 139/143 (97%)

Query:   100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
             VEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTTW
Sbjct:    41 VEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTW 100

Query:   160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
             LEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEAF
Sbjct:   101 LEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160

Query:   220 IDTAKEIYEKIQEGVFDITNEVD 242
             I+TAKEIYEKIQEGVFDI NE +
Sbjct:   161 INTAKEIYEKIQEGVFDINNEAN 183

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0006184 "GTP catabolic process" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

UNIPROTKB|Q5R6B6 RAB2A "Ras-related protein Rab-2A" [Pongo abelii (taxid:9601)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 131/143 (91%), Positives = 139/143 (97%)

Query:   100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
             VEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTTW
Sbjct:    41 VEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTW 100

Query:   160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
             LEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEAF
Sbjct:   101 LEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160

Query:   220 IDTAKEIYEKIQEGVFDITNEVD 242
             I+TAKEIYEKIQEGVFDI NE +
Sbjct:   161 INTAKEIYEKIQEGVFDINNEAN 183

GO:0003924 "GTPase activity" evidence=ISS

GO:0005525 "GTP binding" evidence=ISS

GO:0019003 "GDP binding" evidence=ISS

MGI|MGI:1928750 Rab2a "RAB2A, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 680 (244.4 bits), Expect = 6.5e-67, P = 6.5e-67
 Identities = 131/143 (91%), Positives = 139/143 (97%)

Query:   100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
             VEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTTW
Sbjct:    41 VEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTW 100

Query:   160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
             LEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEAF
Sbjct:   101 LEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 160

Query:   220 IDTAKEIYEKIQEGVFDITNEVD 242
             I+TAKEIYEKIQEGVFDI NE +
Sbjct:   161 INTAKEIYEKIQEGVFDINNEAN 183

GO:0000139 "Golgi membrane" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=ISO

GO:0005525 "GTP binding" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=TAS

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q05975	RAB2_LYMST	No assigned EC number	0.9097	0.5877	0.6792	N/A	N/A
P61105	RAB2A_CANFA	No assigned EC number	0.9166	0.5877	0.6792	yes	N/A
P92963	RAB1C_ARATH	No assigned EC number	0.8098	0.5673	0.6587	yes	N/A
P53994	RAB2A_MOUSE	No assigned EC number	0.9166	0.5877	0.6792	yes	N/A
P05712	RAB2A_RAT	No assigned EC number	0.9166	0.5877	0.6792	yes	N/A
Q01971	RAB2A_RABIT	No assigned EC number	0.9166	0.5877	0.6792	yes	N/A
Q90965	RAB2A_CHICK	No assigned EC number	0.9166	0.5877	0.6792	yes	N/A
Q4R4X6	RAB2A_MACFA	No assigned EC number	0.9166	0.5877	0.6792	N/A	N/A
Q5R6B6	RAB2A_PONAB	No assigned EC number	0.9166	0.5877	0.6792	yes	N/A
P61019	RAB2A_HUMAN	No assigned EC number	0.9166	0.5877	0.6792	no	N/A
P36409	RAB2A_DICDI	No assigned EC number	0.7605	0.5591	0.6618	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	245
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-93
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	2e-91
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	1e-79
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-69
pfam00071	162	pfam00071, Ras, Ras family	1e-68
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	1e-68
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	1e-67
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	2e-61
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	2e-60
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	2e-56
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	1e-55
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	8e-55
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-53
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-52
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	5e-51
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	3e-48
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	1e-47
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	1e-43
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	5e-42
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	7e-42
PLN03108	210	PLN03108, PLN03108, Rab family protein; Provisiona	6e-39
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	2e-38
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	7e-38
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	5e-37
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	5e-36
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	5e-34
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	1e-33
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	1e-33
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	1e-33
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	9e-33
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	3e-32
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	1e-30
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	5e-30
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	7e-30
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	3e-29
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	8e-29
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	3e-28
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	9e-27
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	7e-26
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	2e-25
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	3e-25
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	8e-25
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	2e-24
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	3e-24
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	3e-24
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	4e-24
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	6e-24
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	6e-24
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	8e-24
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	1e-23
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	1e-23
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	2e-23
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	3e-23
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	4e-23
pfam00071	162	pfam00071, Ras, Ras family	5e-23
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	3e-22
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-21
cd04108	170	cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab3	5e-21
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	2e-20
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	2e-20
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	3e-20
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	8e-20
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-19
cd04122	166	cd04122, Rab14, Rab GTPase family 14 (Rab14)	3e-19
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	5e-19
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	5e-19
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	1e-18
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	2e-18
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	2e-17
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	9e-17
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	2e-16
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-16
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	2e-16
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	2e-16
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-16
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	3e-16
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	8e-16
smart00176	200	smart00176, RAN, Ran (Ras-related nuclear proteins	1e-15
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	8e-15
cd04144	190	cd04144, Ras2, Rat sarcoma (Ras) family 2 of small	6e-14
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	6e-14
cd04113	161	cd04113, Rab4, Rab GTPase family 4 (Rab4)	9e-14
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	1e-13
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	2e-13
cd04130	173	cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (W	3e-13
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	5e-13
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-12
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-12
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	2e-12
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	6e-12
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	8e-12
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	9e-12
PLN03118	211	PLN03118, PLN03118, Rab family protein; Provisiona	3e-11
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	3e-11
cd01870	175	cd01870, RhoA_like, Ras homology family A (RhoA)-l	3e-11
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	4e-11
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	4e-11
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	6e-11
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	6e-11
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	1e-10
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	1e-10
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	1e-10
cd00878	158	cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf	2e-10
cd04129	190	cd04129, Rho2, Ras homology family 2 (Rho2) of sma	4e-10
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	7e-10
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	9e-10
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	9e-10
cd04173	221	cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases	2e-09
pfam08477	116	pfam08477, Miro, Miro-like protein	3e-09
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	3e-09
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	6e-09
cd04101	167	cd04101, RabL4, Rab GTPase-like family 4 (Rab-like	9e-09
cd04146	166	cd04146, RERG_RasL11_like, Ras-related and Estroge	1e-08
cd04133	173	cd04133, Rop_like, Rho-related protein from plants	1e-08
cd04131	176	cd04131, Rnd, Rho family GTPase subfamily Rnd incl	2e-08
cd01875	191	cd01875, RhoG, Ras homolog family, member G (RhoG)	2e-08
cd04127	180	cd04127, Rab27A, Rab GTPase family 27a (Rab27a)	4e-08
cd04119	168	cd04119, RJL, Rab GTPase family J-like (RabJ-like)	8e-08
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	1e-07
cd04147	197	cd04147, Ras_dva, Ras - dorsal-ventral anterior lo	1e-07
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	2e-07
cd01871	174	cd01871, Rac1_like, Ras-related C3 botulinum toxin	2e-07
cd04160	168	cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)	3e-07
cd04120	202	cd04120, Rab12, Rab GTPase family 12 (Rab12)	8e-07
smart00177	175	smart00177, ARF, ARF-like small GTPases; ARF, ADP-	2e-06
cd04172	182	cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases	3e-06
PTZ00133	182	PTZ00133, PTZ00133, ADP-ribosylation factor; Provi	7e-06
cd04153	174	cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8)	7e-06
PTZ00099	176	PTZ00099, PTZ00099, rab6; Provisional	1e-05
cd09914	161	cd09914, RocCOR, Ras of complex proteins (Roc) C-t	1e-05
cd01865	165	cd01865, Rab3, Rab GTPase family 3 contains Rab3A,	2e-05
cd04174	232	cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases	2e-05
cd04149	168	cd04149, Arf6, ADP ribosylation factor 6 (Arf6)	2e-05
cd04159	159	cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl	3e-05
cd04152	183	cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7)	4e-05
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	5e-05
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	6e-05
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	8e-05
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	9e-05
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	9e-05
smart00174	174	smart00174, RHO, Rho (Ras homology) subfamily of R	1e-04
cd04150	159	cd04150, Arf1_5_like, ADP-ribosylation factor-1 (A	1e-04
pfam00025	174	pfam00025, Arf, ADP-ribosylation factor family	1e-04
cd01893	168	cd01893, Miro1, Mitochondrial Rho family 1 (Miro1)	1e-04
cd04132	197	cd04132, Rho4_like, Ras homology family 4 (Rho4) o	2e-04
cd01873	195	cd01873, RhoBTB, RhoBTB protein is an atypical mem	2e-04
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	4e-04
cd04151	158	cd04151, Arl1, ADP ribosylation factor 1 (Arf1)	4e-04
cd04156	160	cd04156, ARLTS1, Arf-like tumor suppressor gene 1	5e-04
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	0.001
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	0.001
cd04135	174	cd04135, Tc10, Rho GTPase TC10 (Tc10)	0.001
cd00877	166	cd00877, Ran, Ras-related nuclear proteins (Ran)/T	0.002
cd04142	198	cd04142, RRP22, Ras-related protein on chromosome	0.002
PLN00223	181	PLN00223, PLN00223, ADP-ribosylation factor; Provi	0.002
pfam04670	230	pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserve	0.003
cd04158	169	cd04158, ARD1, (ADP-ribosylation factor domain pro	0.003
COG2229	187	COG2229, COG2229, Predicted GTPase [General functi	0.003
cd04121	189	cd04121, Rab40, Rab GTPase family 40 (Rab40) conta	0.004
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	0.004

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  271 bits (695), Expect = 1e-93
 Identities = 117/131 (89%), Positives = 125/131 (95%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRRETFNHLT+
Sbjct: 38  GVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS 97

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHSNSNM IMLIGNK DL++RREV  EEGE FAREHGL+FMETSAK A+NVEEA
Sbjct: 98  WLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEA 157

Query: 219 FIDTAKEIYEK 229
           FI+TAKEIY+K
Sbjct: 158 FINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  268 bits (686), Expect = 2e-91
 Identities = 115/142 (80%), Positives = 126/142 (88%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARMITID K IKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRRETFNHL +
Sbjct: 40  GVEFGARMITIDNKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLAS 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQH+N+NM IMLIGNK DL  RR V  EEGE FA+EHGL+FME SAK A NVEEA
Sbjct: 100 WLEDARQHANANMTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNE 240
           FI TA +IY+KIQ+GVFD++NE
Sbjct: 160 FIKTAAKIYKKIQDGVFDVSNE 181

Length = 210

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score =  235 bits (603), Expect = 1e-79
 Identities = 85/139 (61%), Positives = 108/139 (77%)

Query: 91  SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR 150
           S    S  GV+F  + I +DGK++KLQIWDTAGQE FRSIT SYYRGA GALLVYDIT R
Sbjct: 26  SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITNR 85

Query: 151 ETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK 210
           E+F +L  WL++ R++++ N+VIML+GNKSDL+ +R+V +EE E FA EHGL F ETSAK
Sbjct: 86  ESFENLENWLKELREYASPNVVIMLVGNKSDLEEQRQVSREEAEAFAEEHGLPFFETSAK 145

Query: 211 LATNVEEAFIDTAKEIYEK 229
             TNVEEAF + A+EI ++
Sbjct: 146 TNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score =  210 bits (537), Expect = 2e-69
 Identities = 72/126 (57%), Positives = 98/126 (77%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F ++ I +DGK++KLQIWDTAGQE FRSIT SYYRGA GA+LVYD+T RE+F +L  
Sbjct: 34  GVDFKSKTIEVDGKKVKLQIWDTAGQERFRSITSSYYRGAHGAILVYDVTNRESFENLDK 93

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL + ++++  N+ I+L+GNKSDL+  R+V  EE + FA+E+GL+F ETSAK   NV+EA
Sbjct: 94  WLNELKEYAPPNIPIILVGNKSDLEDERQVSTEEAQQFAKENGLLFFETSAKTGENVDEA 153

Query: 219 FIDTAK 224
           F   A+
Sbjct: 154 FESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score =  208 bits (531), Expect = 1e-68
 Identities = 73/130 (56%), Positives = 96/130 (73%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  + I +DGK +KLQIWDTAGQE FR++   YYRGA G LLVYDIT R++F ++  
Sbjct: 33  GVDFYTKTIEVDGKTVKLQIWDTAGQERFRALRPLYYRGAQGFLLVYDITSRDSFENVKK 92

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLE+  +H++ N+ I+L+GNK DL+ +R V  EEGE  A+E GL FMETSAK   NVEEA
Sbjct: 93  WLEEILRHADENVPIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEA 152

Query: 219 FIDTAKEIYE 228
           F + A+EI +
Sbjct: 153 FEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score =  208 bits (530), Expect = 1e-68
 Identities = 86/131 (65%), Positives = 111/131 (84%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFG R+I ++G++IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL++
Sbjct: 36  GVEFGTRIIEVNGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS 95

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL DAR  +N N VI LIGNK+DL+A+R+V  EE + FA E+GL+F+E SAK   NVE+A
Sbjct: 96  WLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDA 155

Query: 219 FIDTAKEIYEK 229
           F++TAK+IY+ 
Sbjct: 156 FLETAKKIYQN 166

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score =  205 bits (525), Expect = 1e-67
 Identities = 79/129 (61%), Positives = 96/129 (74%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEF  R I IDGK IK QIWDTAGQE +R+IT +YYRGA GALLVYDIT++ TF ++  
Sbjct: 37  GVEFATRTIQIDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKSTFENVER 96

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL++ R H++SN+VIML+GNKSDL   R V  EE + FA ++GL F+ETSA   TNVEEA
Sbjct: 97  WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEA 156

Query: 219 FIDTAKEIY 227
           F     EIY
Sbjct: 157 FKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score =  189 bits (483), Expect = 2e-61
 Identities = 81/128 (63%), Positives = 101/128 (78%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFG+R++ + GK +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RE+FN LT 
Sbjct: 34  GVEFGSRVVNVGGKSVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRESFNALTN 93

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL DAR  ++ ++VI+L+GNK DL+  REV   E   FA+E+GL+F+ETSA    NVEEA
Sbjct: 94  WLTDARTLASPDIVIILVGNKKDLEDDREVTFLEASRFAQENGLLFLETSALTGENVEEA 153

Query: 219 FIDTAKEI 226
           F+  A+ I
Sbjct: 154 FLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score =  187 bits (477), Expect = 2e-60
 Identities = 72/131 (54%), Positives = 99/131 (75%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G++F  R I +DGK+IKLQIWDTAGQE FR+IT SYYRGA G +LVYDIT  ++F ++  
Sbjct: 37  GIDFKIRTIELDGKKIKLQIWDTAGQERFRTITTSYYRGAMGIILVYDITDEKSFENIKN 96

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W+ +  +H++ ++  ML+GNK D++ +R V KEEGE  ARE+G+ F+ETSAK   NVEEA
Sbjct: 97  WMRNIDEHASEDVERMLVGNKCDMEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEA 156

Query: 219 FIDTAKEIYEK 229
           F+  AK+I +K
Sbjct: 157 FLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score =  178 bits (454), Expect = 2e-56
 Identities = 74/137 (54%), Positives = 101/137 (73%), Gaps = 2/137 (1%)

Query: 99  GVEFGARMITI-DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT 157
           GV+F +R+I I  G +IKLQ+WDTAGQE FRSITRSYYR + G LLV+DIT RE+F H+ 
Sbjct: 36  GVDFFSRLIEIEPGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITNRESFEHVH 95

Query: 158 TWLEDARQH-SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
            WLE+AR H      V +L+G+K DL+++R+V +EE E  A++ G+ ++ETSA+   NVE
Sbjct: 96  DWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVE 155

Query: 217 EAFIDTAKEIYEKIQEG 233
           EAF    +EIYE+I+ G
Sbjct: 156 EAFELLTQEIYERIKRG 172

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score =  175 bits (446), Expect = 1e-55
 Identities = 59/129 (45%), Positives = 89/129 (68%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G  F  + + +D   +K +IWDTAGQE +RS+   YYRGAA A++VYDIT  E+F    +
Sbjct: 35  GAAFLTQTVNLDDTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITSEESFEKAKS 94

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W+++ ++H   N+VI L GNK+DL+++R+V  EE + +A E+GL+FMETSAK   NV E 
Sbjct: 95  WVKELQEHGPPNIVIALAGNKADLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNEL 154

Query: 219 FIDTAKEIY 227
           F + A+++ 
Sbjct: 155 FTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score =  173 bits (440), Expect = 8e-55
 Identities = 69/131 (52%), Positives = 98/131 (74%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  R I +DGK +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  
Sbjct: 36  GVDFKIRTIELDGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQ 95

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL++  ++++ N+  +L+GNK DL  ++ V   E + FA E G+ F+ETSAK ATNVEEA
Sbjct: 96  WLQEIDRYASENVNKLLVGNKCDLTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEA 155

Query: 219 FIDTAKEIYEK 229
           F+  A+EI ++
Sbjct: 156 FMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score =  169 bits (431), Expect = 1e-53
 Identities = 67/129 (51%), Positives = 95/129 (73%), Gaps = 1/129 (0%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  + + I GK++KLQIWDTAGQE FR+IT+SYYR A GA++ YDITRR +F  +  
Sbjct: 37  GVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITRRSSFESVPH 96

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVF-METSAKLATNVEE 217
           W+E+  ++  SN+V++LIGNK DL+ +REV  EE    A  +G++  +ETSAK ++NVEE
Sbjct: 97  WIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEE 156

Query: 218 AFIDTAKEI 226
           AF+  A E+
Sbjct: 157 AFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score =  168 bits (428), Expect = 2e-52
 Identities = 77/137 (56%), Positives = 101/137 (73%)

Query: 94  SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF 153
           S S  GVEF  R + ++GK +K QIWDTAGQE +R+IT +YYRGA GALLVYDIT+R+TF
Sbjct: 41  SKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKRQTF 100

Query: 154 NHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT 213
           +++  WL + R H++SN+VIM+ GNKSDL+  R V +E+G+  A + GL F+ETSA  AT
Sbjct: 101 DNVQRWLRELRDHADSNIVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEAT 160

Query: 214 NVEEAFIDTAKEIYEKI 230
           NVE+AF     EIY  I
Sbjct: 161 NVEKAFQTILLEIYHII 177

Length = 216

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score =  163 bits (415), Expect = 5e-51
 Identities = 72/133 (54%), Positives = 99/133 (74%), Gaps = 6/133 (4%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  + +T+DGK++KL IWDTAGQE FR++T SYYRGA G +LVYD+TRR+TF++L T
Sbjct: 34  GVDFKVKTVTVDGKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTRRDTFDNLDT 93

Query: 159 WLEDARQHS-NSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEE 217
           WL +   +S N + V ML+GNK D    REV +EEG+ FAR+H ++F+ETSAK    V++
Sbjct: 94  WLNELDTYSTNPDAVKMLVGNKIDK-ENREVTREEGQKFARKHNMLFIETSAKTRIGVQQ 152

Query: 218 AFIDTAKEIYEKI 230
           AF    +E+ EKI
Sbjct: 153 AF----EELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score =  157 bits (398), Expect = 3e-48
 Identities = 70/148 (47%), Positives = 105/148 (70%), Gaps = 4/148 (2%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G++F  +++T+DG ++KLQIWDTAGQE FRS+T +YYR A   LL+YD+T + +F+++  
Sbjct: 35  GIQFTNKVVTVDGVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKSSFDNIRA 94

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL +  +++ S++VIML+GNK+D+   R VK+E+GE  A+E+G+ FMETSAK   NVE A
Sbjct: 95  WLTEILEYAQSDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELA 154

Query: 219 FIDTAKEI----YEKIQEGVFDITNEVD 242
           F   AKE+     E+  E  F I + V+
Sbjct: 155 FTAVAKELKHRSVEQPDEPKFKIQDYVE 182

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score =  154 bits (392), Expect = 1e-47
 Identities = 55/128 (42%), Positives = 92/128 (71%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G++F ++ + +D K ++LQ+WDTAGQE FRS+  SY R ++ A++VYDIT R++F++   
Sbjct: 34  GIDFLSKTMYVDDKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNRQSFDNTDK 93

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W++D R    ++++I+L+GNK+DL  +R+V  EEGE  A+E+  +F+ETSAK   NV++ 
Sbjct: 94  WIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQL 153

Query: 219 FIDTAKEI 226
           F   A+ +
Sbjct: 154 FKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score =  144 bits (365), Expect = 1e-43
 Identities = 63/134 (47%), Positives = 90/134 (67%)

Query: 93  GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRET 152
           G  +  GV+F  + + I G++IKLQIWDTAGQE FRSIT+SYYR A   +L YDIT  E+
Sbjct: 35  GQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEES 94

Query: 153 FNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA 212
           F  L  WL +  Q++N+ ++ +L+GNK DL  RREV ++  E F+    + ++ETSAK +
Sbjct: 95  FRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKES 154

Query: 213 TNVEEAFIDTAKEI 226
            NVE+ F+D A  +
Sbjct: 155 DNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score =  140 bits (355), Expect = 5e-42
 Identities = 52/125 (41%), Positives = 79/125 (63%)

Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + I GK+I L IWDTAGQE + ++   YYR A GA+LVYDIT  ++F  +  W++
Sbjct: 37  FFQKTVNIGGKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITDADSFQKVKKWIK 96

Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + +Q   +N+ ++++GNK DL+ +R V K E E +A+  G    ETSAK    +EE F+ 
Sbjct: 97  ELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLS 156

Query: 222 TAKEI 226
            AK +
Sbjct: 157 LAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score =  141 bits (357), Expect = 7e-42
 Identities = 67/132 (50%), Positives = 94/132 (71%), Gaps = 2/132 (1%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT- 157
           GV+F  + +T+ GK++KL IWDTAGQE FR++T SYYR A G +LVYD+TRRETF +L+ 
Sbjct: 47  GVDFKIKQLTVGGKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRRETFTNLSD 106

Query: 158 TWLEDARQHS-NSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
            W ++   +S N + V ML+GNK D ++ R+V +EEG   A+EHG +F+E SAK   NVE
Sbjct: 107 VWGKEVELYSTNQDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVE 166

Query: 217 EAFIDTAKEIYE 228
           + F + A +I E
Sbjct: 167 QCFEELALKIME 178

Length = 211

>gnl|CDD|178655 PLN03108, PLN03108, Rab family protein; Provisional

 Score =  133 bits (337), Expect = 6e-39
 Identities = 59/98 (60%), Positives = 69/98 (70%), Gaps = 1/98 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           M IMLIGNK DL  RR V  EEGE FA+EHGL+FME SAK A NVEEAFI TA +IY+KI
Sbjct: 112 MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEAFIKTAAKIYKKI 171

Query: 61  QEGVFDITNEANGIKIGPQHSPNNPSLPSGSSGSSSGG 98
           Q+GVFD++NE+ GIK+G    P   S     + S  GG
Sbjct: 172 QDGVFDVSNESYGIKVGYGAIP-GASGGRDGTSSQGGG 208

Length = 210

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score =  132 bits (333), Expect = 2e-38
 Identities = 60/144 (41%), Positives = 95/144 (65%), Gaps = 1/144 (0%)

Query: 88  PSGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDI 147
            +      S  GV+F  + + + GK+I+LQIWDTAGQE F SIT +YYR A G +LVYDI
Sbjct: 23  DTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDI 82

Query: 148 TRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFME 206
           T++ETF+ L  W++   ++++ +  ++L+GNK D +  RE+ +++GE FA++  G+ F E
Sbjct: 83  TKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCE 142

Query: 207 TSAKLATNVEEAFIDTAKEIYEKI 230
            SAK   NV+E F+    +I +K+
Sbjct: 143 ASAKDNFNVDEIFLKLVDDILKKM 166

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score =  130 bits (328), Expect = 7e-38
 Identities = 51/139 (36%), Positives = 86/139 (61%), Gaps = 5/139 (3%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G +F  + +T+D + + LQIWDTAGQE F+S+  ++YRGA   +LVYD+T  ++F  L +
Sbjct: 34  GADFLTKEVTVDDRLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTNPKSFESLDS 93

Query: 159 WLED----ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLAT 213
           W ++    A      N   +++GNK DL+ +R+V  ++ + + +  G + + ETSAK A 
Sbjct: 94  WRDEFLIQASPRDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAI 153

Query: 214 NVEEAFIDTAKEIYEKIQE 232
           NV++AF   A+   E+ +E
Sbjct: 154 NVDQAFETIARLALEQEKE 172

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score =  127 bits (321), Expect = 5e-37
 Identities = 52/121 (42%), Positives = 69/121 (57%), Gaps = 1/121 (0%)

Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH 166
           I +DG+   L I DTAGQE F ++   Y R   G +LVY IT RE+F  +    E   + 
Sbjct: 40  IVVDGETYTLDILDTAGQEEFSAMRDQYIRNGDGFILVYSITSRESFEEIKNIREQILRV 99

Query: 167 SNSNMV-IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 225
            +   V I+L+GNK DL+  R+V  EEGE  A E G  F+ETSAK   N++E F    +E
Sbjct: 100 KDKEDVPIVLVGNKCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVRE 159

Query: 226 I 226
           I
Sbjct: 160 I 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score =  125 bits (315), Expect = 5e-36
 Identities = 54/127 (42%), Positives = 79/127 (62%), Gaps = 5/127 (3%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFR-SITRSYYRGAAGALLVYDITRRETFNHLT 157
           GV+F  R + IDG++IK+Q+WDTAGQE FR S+ + YYR     + VYD+T   +F+ L 
Sbjct: 36  GVDFRERTVEIDGERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVTNMASFHSLP 95

Query: 158 TWLEDARQHSNSNMVI-MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT--- 213
           +W+E+  QHS  N V  +L+GNK DL  + +V  +  + FA  H +   ETSAK  +   
Sbjct: 96  SWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSEND 155

Query: 214 NVEEAFI 220
           +VE  F+
Sbjct: 156 HVEAIFM 162

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score =  120 bits (301), Expect = 5e-34
 Identities = 57/131 (43%), Positives = 81/131 (61%)

Query: 89  SGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDIT 148
           S +S   S  G++F  + +  + K+IKLQIWDTAGQE +R+IT +YYRGA G +L+YDIT
Sbjct: 25  SFTSAFVSTVGIDFKVKTVYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDIT 84

Query: 149 RRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETS 208
             E+FN +  W    + +S  N  ++L+GNK D++  R V  E G   A + G  F E S
Sbjct: 85  NEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSAERGRQLADQLGFEFFEAS 144

Query: 209 AKLATNVEEAF 219
           AK   NV++ F
Sbjct: 145 AKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score =  119 bits (300), Expect = 1e-33
 Identities = 55/121 (45%), Positives = 73/121 (60%), Gaps = 1/121 (0%)

Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-ARQ 165
           I IDG+   L I DTAGQE F ++   Y R   G LLVY IT R++F  +  + E   R 
Sbjct: 41  IEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIKKFREQILRV 100

Query: 166 HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 225
               ++ I+L+GNK DL++ R V  EEG+  AR+ G  F+ETSAK   NV+EAF D  +E
Sbjct: 101 KDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVRE 160

Query: 226 I 226
           I
Sbjct: 161 I 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score =  119 bits (300), Expect = 1e-33
 Identities = 55/121 (45%), Positives = 72/121 (59%), Gaps = 1/121 (0%)

Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-ARQ 165
           I IDG+   L I DTAGQE F ++   Y R   G LLVY IT R++F  +  + E   R 
Sbjct: 43  IEIDGEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITDRQSFEEIAKFREQILRV 102

Query: 166 HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 225
               ++ I+L+GNK DL+  R V  EEG+  AR+ G  F+ETSAK   NV+EAF D  +E
Sbjct: 103 KDRDDVPIVLVGNKCDLENERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVRE 162

Query: 226 I 226
           I
Sbjct: 163 I 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score =  119 bits (301), Expect = 1e-33
 Identities = 56/121 (46%), Positives = 82/121 (67%), Gaps = 1/121 (0%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  R + I+G+++KLQIWDTAGQE FR+IT +YYRG  G ++VYD+T  E+F ++  
Sbjct: 40  GVDFKIRTVEINGERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNGESFVNVKR 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL++  Q+ +    + L+GNK+D   R+ V+ E+   FA + G+   ETSAK   NVEE 
Sbjct: 100 WLQEIEQNCDDVCKV-LVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEM 158

Query: 219 F 219
           F
Sbjct: 159 F 159

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score =  116 bits (292), Expect = 9e-33
 Identities = 51/121 (42%), Positives = 83/121 (68%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  + I +DG ++++QIWDTAGQE +++IT+ YYR A G  LVYDI+   ++ H+  
Sbjct: 34  GVDFKMKTIEVDGIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISSERSYQHIMK 93

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W+ D  +++   +  +LIGNK+D + +R+V  E+G   A+E+G+ F ETSA    N++E+
Sbjct: 94  WVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKES 153

Query: 219 F 219
           F
Sbjct: 154 F 154

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score =  116 bits (293), Expect = 3e-32
 Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 7/149 (4%)

Query: 99  GVEFGARMITID-GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT 157
           GV+F  ++I  D    ++LQ+WD AGQE F  +TR YY+GA GA++V+D+TR  TF  + 
Sbjct: 34  GVDFALKVIEWDPNTVVRLQLWDIAGQERFGGMTRVYYKGAVGAIIVFDVTRPSTFEAVL 93

Query: 158 TWLED--ARQHSNSNMVI--MLIGNKSDLDARRE-VKKEEGEVFAREHGLV-FMETSAKL 211
            W  D  ++    +   I  +L+ NK DL   R     E+ + F +E+G + + ETSAK 
Sbjct: 94  KWKADLDSKVTLPNGEPIPALLLANKCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKE 153

Query: 212 ATNVEEAFIDTAKEIYEKIQEGVFDITNE 240
             N+EEA     K I +  +       +E
Sbjct: 154 NINIEEAMRFLVKNILKNDKGLQSPEPDE 182

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score =  111 bits (279), Expect = 1e-30
 Identities = 47/59 (79%), Positives = 53/59 (89%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           M IMLIGNK DL++RREV  EEGE FAREHGL+FMETSAK A+NVEEAFI+TAKEIY+K
Sbjct: 110 MTIMLIGNKCDLESRREVSYEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEIYDK 168

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score =  110 bits (275), Expect = 5e-30
 Identities = 53/128 (41%), Positives = 84/128 (65%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G++F ++ + +D   ++LQ+WDTAGQE FRS+  SY R +A A++VYDIT R++F + T 
Sbjct: 14  GIDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTK 73

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W++D       +++I L+GNK+DL   R+V  EEG   A+E+  +F ETSAK   N++  
Sbjct: 74  WIQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVL 133

Query: 219 FIDTAKEI 226
           F   A ++
Sbjct: 134 FKKIAAKL 141

Length = 176

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score =  109 bits (275), Expect = 7e-30
 Identities = 45/109 (41%), Positives = 72/109 (66%), Gaps = 1/109 (0%)

Query: 111 GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS- 169
             ++ LQ+WDTAGQE FRS+T +++R A G LL++D+T  ++F ++  W+   + H+   
Sbjct: 60  AFRVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSEQSFLNVRNWMSQLQAHAYCE 119

Query: 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           N  I+LIGNK+DL  +REV + +    A ++G+ + ETSA    NVE+A
Sbjct: 120 NPDIVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKA 168

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score =  108 bits (271), Expect = 3e-29
 Identities = 53/141 (37%), Positives = 88/141 (62%), Gaps = 3/141 (2%)

Query: 86  SLPSGSSGSSSG--GGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALL 143
           SL  GS+ S  G   G+++    I +DG+++KLQ+WDT+GQ  F +I RSY RGA G +L
Sbjct: 25  SLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIIL 84

Query: 144 VYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLV 203
           VYDIT R +F+ +  W+++  +H+   +  +L+GN+  L  +R+V  E+ + +A  +G+ 
Sbjct: 85  VYDITNRWSFDGIDRWIKEIDEHA-PGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMT 143

Query: 204 FMETSAKLATNVEEAFIDTAK 224
           F E S     N+ E+F + A+
Sbjct: 144 FFEVSPLCNFNITESFTELAR 164

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score =  106 bits (267), Expect = 8e-29
 Identities = 38/126 (30%), Positives = 71/126 (56%), Gaps = 5/126 (3%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G+++G + +++  K++++  +D +G   +  +   +Y+   G LLVYD+T R++F  L +
Sbjct: 34  GIDYGVKKVSVRNKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTDRQSFEALDS 93

Query: 159 WLEDARQHSNS-----NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT 213
           WL++ +Q         N+V+++  NK DL   R V ++EG ++A   G  + ETSA    
Sbjct: 94  WLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGE 153

Query: 214 NVEEAF 219
            V E F
Sbjct: 154 GVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score =  104 bits (262), Expect = 3e-28
 Identities = 47/122 (38%), Positives = 75/122 (61%), Gaps = 1/122 (0%)

Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH 166
           + +DG++++L I DTAGQE + +I  +Y+R   G LLV+ IT  E+F  L  + E   + 
Sbjct: 41  VVLDGEEVQLNILDTAGQEDYAAIRDNYFRSGEGFLLVFSITDMESFTALAEFREQILRV 100

Query: 167 SNSNMV-IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 225
              + V ++L+GNK DL+ +R+V  EE    A + G+ ++ETSAK   NV++ F D  +E
Sbjct: 101 KEDDNVPLLLVGNKCDLEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVRE 160

Query: 226 IY 227
           I 
Sbjct: 161 IR 162

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score =  101 bits (254), Expect = 9e-27
 Identities = 48/133 (36%), Positives = 73/133 (54%), Gaps = 3/133 (2%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + +DG+   L++ DTAGQE + ++   + R   G +LVY IT R TF  +  + E  +
Sbjct: 38  KQVVVDGQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITSRSTFERVERFREQIQ 97

Query: 165 Q---HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           +    S +++ IM++GNK D    REV  EEG   AR  G  F+E SAK   NVE AF  
Sbjct: 98  RVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYT 157

Query: 222 TAKEIYEKIQEGV 234
             + + ++ Q G 
Sbjct: 158 LVRALRQQRQGGQ 170

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 98.6 bits (246), Expect = 7e-26
 Identities = 46/120 (38%), Positives = 71/120 (59%), Gaps = 1/120 (0%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA-RQH 166
            IDG+  +L I DTAGQE F ++   Y R   G LLV+ +T R +F  +  +     R  
Sbjct: 44  EIDGQWARLDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTDRGSFEEVDKFHTQILRVK 103

Query: 167 SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
                 ++L+GNK+DL+ +R+V +EEG+  AR+  + ++ETSAK   NV++AF D  + I
Sbjct: 104 DRDEFPMILVGNKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 97.6 bits (243), Expect = 2e-25
 Identities = 51/135 (37%), Positives = 78/135 (57%), Gaps = 10/135 (7%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEF  + + +DG  + LQIWDTAGQE FRS+   +YRG+   LL + +   ++F +L+ 
Sbjct: 39  GVEFLNKDLEVDGHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN 98

Query: 159 W------LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLV-FMETSAKL 211
           W        D ++  +   VI  +GNK D+   R+V  EE + + R++G   + ETSAK 
Sbjct: 99  WKKEFIYYADVKEPESFPFVI--LGNKIDIP-ERQVSTEEAQAWCRDNGDYPYFETSAKD 155

Query: 212 ATNVEEAFIDTAKEI 226
           ATNV  AF +  + +
Sbjct: 156 ATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 97.2 bits (242), Expect = 3e-25
 Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 3/129 (2%)

Query: 99  GVEFGARMITI--DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL 156
           G +   + + +      ++L I+D+AGQE F  +  + +   A   +VYD+T   +FN+ 
Sbjct: 36  GCDLVVKTVPVPDTSDSVELFIFDSAGQELFSDMVENVWEQPAVVCVVYDVTNEVSFNNC 95

Query: 157 TTWLEDARQHSN-SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNV 215
           + W+   R HS+  +   +L+GNK DL  RREV   + +  A+ + L F ETSAK     
Sbjct: 96  SRWINRVRTHSHGLHTPGVLVGNKCDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGY 155

Query: 216 EEAFIDTAK 224
           E  F+  A+
Sbjct: 156 EAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 96.0 bits (239), Expect = 8e-25
 Identities = 50/123 (40%), Positives = 72/123 (58%), Gaps = 1/123 (0%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           + + +DG+Q  L+I DTAG E F ++   Y +   G +LVY IT + TFN L    E   
Sbjct: 40  KQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQIL 99

Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           R     ++ ++L+GNK DL+  R V KE+G+  AR+ G  F+ETSAK   NV E F D  
Sbjct: 100 RVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLV 159

Query: 224 KEI 226
           ++I
Sbjct: 160 RQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 95.3 bits (238), Expect = 2e-24
 Identities = 37/59 (62%), Positives = 47/59 (79%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           +VIML+GNKSDL+ +R+V +EE E FA EHGL F ETSAK  TNVEEAF + A+EI ++
Sbjct: 106 VVIMLVGNKSDLEEQRQVSREEAEAFAEEHGLPFFETSAKTNTNVEEAFEELAREILKR 164

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 94.7 bits (236), Expect = 3e-24
 Identities = 45/127 (35%), Positives = 70/127 (55%), Gaps = 5/127 (3%)

Query: 105 RMITIDGKQIKLQIWDTAGQE--AFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED 162
           R +TIDG+Q+ L+I DT GQ+            R A G +LVY IT R +F+ ++  L+ 
Sbjct: 38  RQVTIDGEQVSLEIQDTPGQQQNEDPESLERSLRWADGFVLVYSITDRSSFDVVSQLLQL 97

Query: 163 ARQHS--NSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL-ATNVEEAF 219
            R+    +  + ++L+GNK+DL   R+V  EEG+  A E G +F E SA      V+  F
Sbjct: 98  IREIKKRDGEIPVILVGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVF 157

Query: 220 IDTAKEI 226
            +  +E+
Sbjct: 158 HELCREV 164

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 96.2 bits (239), Expect = 3e-24
 Identities = 59/169 (34%), Positives = 84/169 (49%), Gaps = 18/169 (10%)

Query: 93  GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRET 152
           G     G    A+ I    + IKLQ+WDTAGQE +RS+   YYRGA G L+VYD T RE+
Sbjct: 33  GYPPTIGNLDPAKTIEPYRRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTLRES 92

Query: 153 FNHLT-TWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREH----------- 200
            + LT  WLE+ R+ +  ++ I+L+GNK DL   +   +E      RE            
Sbjct: 93  SDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVL 152

Query: 201 ----GLVFMETSAKLAT--NVEEAFIDTAKEIYEKIQEGVFDITNEVDL 243
                   +ETSAK  T  NV E F +  +++ E+I++ V         
Sbjct: 153 PEVANPALLETSAKSLTGPNVNELFKELLRKLLEEIEKLVLKNELRQLD 201

Length = 219

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 94.5 bits (235), Expect = 4e-24
 Identities = 49/124 (39%), Positives = 75/124 (60%), Gaps = 2/124 (1%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA- 163
           + + IDG+Q  L+I DTAG E F ++   Y +   G LLVY +T   + N L    E   
Sbjct: 40  KQVEIDGRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVTSEASLNELGELREQVL 99

Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDT 222
           R   + N+ ++L+GNK+DL+  R+V +E+G   +++ G V F ETSA+  TNV+E FID 
Sbjct: 100 RIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDL 159

Query: 223 AKEI 226
            ++I
Sbjct: 160 VRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 94.5 bits (235), Expect = 6e-24
 Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 1/129 (0%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA- 163
           +   ID +   L I DTAGQE + ++   Y R   G L VY IT R +F  + ++ E   
Sbjct: 44  KQCVIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFEEIASFREQIL 103

Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           R      + ++L+GNK DLD+ R+V   EG+  A+  G+ F+ETSAK   NV+EAF +  
Sbjct: 104 RVKDKDRVPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELV 163

Query: 224 KEIYEKIQE 232
           +EI + ++E
Sbjct: 164 REIRKYLKE 172

Length = 189

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 93.6 bits (233), Expect = 6e-24
 Identities = 40/128 (31%), Positives = 63/128 (49%), Gaps = 3/128 (2%)

Query: 94  SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR--E 151
              G    +   +I  DGK  K  + DTAGQE + +I R YYR    +L V+DI     +
Sbjct: 31  YKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQEDYDAIRRLYYRAVESSLRVFDIVILVLD 90

Query: 152 TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL 211
               L    ++   H+ S + I+L+GNK DL   + +K     +FA+ +G   +  SA+ 
Sbjct: 91  VEEILEKQTKEIIHHAESGVPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAET 149

Query: 212 ATNVEEAF 219
             N++ AF
Sbjct: 150 GKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 93.3 bits (232), Expect = 8e-24
 Identities = 48/123 (39%), Positives = 72/123 (58%), Gaps = 2/123 (1%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I  R++F  + T+ E  +
Sbjct: 40  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINSRKSFEDIHTYREQIK 99

Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V   +G+  A+ +G+ ++ETSAK    VEEAF    
Sbjct: 100 RVKDSDDVPMVLVGNKCDL-AARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLV 158

Query: 224 KEI 226
           +EI
Sbjct: 159 REI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 93.0 bits (231), Expect = 1e-23
 Identities = 51/124 (41%), Positives = 72/124 (58%), Gaps = 2/124 (1%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + I +D +Q  L+I DTAG E F ++   Y +   G  LVY IT +++FN L    E   
Sbjct: 40  KQIEVDCQQCMLEILDTAGTEQFTAMRDLYIKNGQGFALVYSITAQQSFNDLQDLREQIL 99

Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDT 222
           +  ++  V M L+GNK DL+  R V KEEG+  AR+ G   F+ETSAK   NV+E F D 
Sbjct: 100 RVKDTEDVPMILVGNKCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDL 159

Query: 223 AKEI 226
            ++I
Sbjct: 160 VRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 92.5 bits (230), Expect = 1e-23
 Identities = 44/123 (35%), Positives = 67/123 (54%), Gaps = 3/123 (2%)

Query: 99  GVEFGARMITID--GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL 156
           GV+F  + I +    + ++L +WDTAGQE F +IT++YYRGA   +LV+  T RE+F  +
Sbjct: 34  GVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTDRESFEAI 93

Query: 157 TTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
            +W E        ++ ++L+  K DL  +  +  EE E  A+   L    TS K   NV 
Sbjct: 94  ESWKEKVEAECG-DIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVT 152

Query: 217 EAF 219
           E F
Sbjct: 153 ELF 155

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 93.4 bits (232), Expect = 2e-23
 Identities = 47/149 (31%), Positives = 73/149 (48%), Gaps = 6/149 (4%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G  F A+ + +  + + L IWDTAG E + +++R YYRGA  A++ YD+T   +F     
Sbjct: 35  GAAFVAKRMVVGERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLTDSSSFERAKF 94

Query: 159 WLEDARQHSNSNMVIMLIGNKSDL----DARREVKKEEGEVFAREHGLVFMETSAKLATN 214
           W+++ +     +  I L G KSDL     + R+V   + + FA E      ETS+K   N
Sbjct: 95  WVKELQN-LEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQN 153

Query: 215 VEEAFIDTAKEIYEKIQEGVFDITNEVDL 243
           V+E F     E +        +    VDL
Sbjct: 154 VDELF-QKVAEDFVSRANNQMNTEKGVDL 181

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 92.3 bits (230), Expect = 3e-23
 Identities = 49/132 (37%), Positives = 77/132 (58%), Gaps = 2/132 (1%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT-WLEDA 163
           ++IT  G++  L+I DTAGQ+ +  + + Y  G  G +LVY +T R++F  +   + +  
Sbjct: 40  KIITYKGQEYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTSRKSFEVVKVIYDKIL 99

Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
                 ++ I+L+GNKSDL   R+V  EEG+  A   G  F+E+SAK   NVEEAF    
Sbjct: 100 DMLGKESVPIVLVGNKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLI 159

Query: 224 KEIYEKIQEGVF 235
           +EI EK++  + 
Sbjct: 160 EEI-EKVENPLP 170

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 91.5 bits (227), Expect = 4e-23
 Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 4/118 (3%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
             +GK I +  WDTAGQE F+++  SYY  A   +LV+D+TR+ T+ +L+ W E+ R++ 
Sbjct: 43  KFEGKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTRKITYKNLSKWYEELREYR 102

Query: 168 NSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 225
              +  +++ NK DLD       ++   FA +H L     SA   TNV + F D  K 
Sbjct: 103 -PEIPCIVVANKIDLDPS---VTQKKFNFAEKHNLPLYYVSAADGTNVVKLFQDAIKL 156

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 91.0 bits (227), Expect = 5e-23
 Identities = 33/58 (56%), Positives = 42/58 (72%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
           + I+L+GNK DL+ +R V  EEGE  A+E GL FMETSAK   NVEEAF + A+EI +
Sbjct: 105 VPIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEEAFEELAREILK 162

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 89.5 bits (222), Expect = 3e-22
 Identities = 45/127 (35%), Positives = 67/127 (52%), Gaps = 1/127 (0%)

Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWL 160
           +F  + I +D     L+I DTAG E F S+   Y +   G ++VY +  ++TF  +    
Sbjct: 36  DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVNQQTFQDIKPMR 95

Query: 161 ED-ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           +   R      + I+L+GNK DL++ REV   EG   A E G  FMETSAK  T V E F
Sbjct: 96  DQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELF 155

Query: 220 IDTAKEI 226
            +  +++
Sbjct: 156 AEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 87.2 bits (217), Expect = 2e-21
 Identities = 41/134 (30%), Positives = 66/134 (49%), Gaps = 20/134 (14%)

Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           +T+DGKQ+ L +WDTAGQE +  +    Y      LL + +    +F ++ T W  + + 
Sbjct: 41  VTVDGKQVNLGLWDTAGQEEYDRLRPLSYPQTDVFLLCFSVDSPSSFENVKTKWYPEIKH 100

Query: 166 HSNSNMVIMLIGNKSDLDARRE--------------VKKEEGEVFAREHGLV-FMETSAK 210
           +   N+ I+L+G K DL   R+              +  EEGE  A+E G V +ME SA 
Sbjct: 101 Y-CPNVPIILVGTKIDL---RDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSAL 156

Query: 211 LATNVEEAFIDTAK 224
               ++E F +  +
Sbjct: 157 TQEGLKEVFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206693 cd04108, Rab36_Rab34, Rab GTPase families 34 (Rab34) and 36 (Rab36)

 Score = 86.1 bits (213), Expect = 5e-21
 Identities = 46/133 (34%), Positives = 72/133 (54%), Gaps = 3/133 (2%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F      + G    LQ+WDTAGQE F+ I  +YYRGA   ++V+D+T   +  H   
Sbjct: 34  GVDFEMERFEVLGVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTDVASLEHTRQ 93

Query: 159 WLEDA-RQHSNSNMVIMLIGNKSDLD--ARREVKKEEGEVFAREHGLVFMETSAKLATNV 215
           WLEDA +++  S++++ L+G K DL   A+  + +++    ARE    +   SA    NV
Sbjct: 94  WLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAREMKAEYWAVSALTGENV 153

Query: 216 EEAFIDTAKEIYE 228
            + F   A   +E
Sbjct: 154 RDFFFRVASLTFE 166

Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 170

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 84.5 bits (210), Expect = 2e-20
 Identities = 33/56 (58%), Positives = 38/56 (67%)

Query: 2   VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
           VIML+GNKSDL   R V  EE + FA ++GL F+ETSA   TNVEEAF     EIY
Sbjct: 110 VIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEAFKQLLTEIY 165

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 84.6 bits (210), Expect = 2e-20
 Identities = 36/127 (28%), Positives = 57/127 (44%), Gaps = 15/127 (11%)

Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQ 165
           + +DGK ++L +WDTAGQE +  +    Y      L+ + +    +F N    W  + + 
Sbjct: 39  VEVDGKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDSPASFENVKEKWYPEVKH 98

Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
               N+ I+L+G K DL        E        V  E+G+  A+  G V ++E SA   
Sbjct: 99  FCP-NVPIILVGTKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQ 157

Query: 213 TNVEEAF 219
             V E F
Sbjct: 158 EGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 83.8 bits (208), Expect = 3e-20
 Identities = 28/56 (50%), Positives = 41/56 (73%)

Query: 2   VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
           VI L GNK+DL+++R+V  EE + +A E+GL+FMETSAK   NV E F + A+++ 
Sbjct: 108 VIALAGNKADLESKRQVSTEEAQEYADENGLLFMETSAKTGENVNELFTEIARKLP 163

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 82.7 bits (205), Expect = 8e-20
 Identities = 33/56 (58%), Positives = 43/56 (76%)

Query: 4   MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           ML+GNK D++ +R V KEEGE  ARE+G+ F+ETSAK   NVEEAF+  AK+I +K
Sbjct: 112 MLVGNKCDMEEKRVVSKEEGEALAREYGIKFLETSAKANINVEEAFLTLAKDILKK 167

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 82.2 bits (203), Expect = 1e-19
 Identities = 45/119 (37%), Positives = 60/119 (50%), Gaps = 5/119 (4%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITR-SYYRGAAGALLVYDITRRETFNHLTTWLEDA 163
           ++I+       LQI DT G   F ++ R S  +G A  +LVY IT +++   L    E  
Sbjct: 40  QVISCSKSICTLQITDTTGSHQFPAMQRLSISKGHA-FILVYSITSKQSLEELKPIYELI 98

Query: 164 RQHSNSNM---VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
            +   +N+    IML+GNK D    REV   EG   AR     FMETSAK   NV+E F
Sbjct: 99  CEIKGNNLEKIPIMLVGNKCDESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133322 cd04122, Rab14, Rab GTPase family 14 (Rab14)

 Score = 81.4 bits (201), Expect = 3e-19
 Identities = 34/58 (58%), Positives = 47/58 (81%)

Query: 2   VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           VI LIGNK+DL+A+R+V  EE + FA E+GL+F+E SAK   NVE+AF++TAK+IY+ 
Sbjct: 109 VIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDAFLETAKKIYQN 166

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 82.2 bits (203), Expect = 5e-19
 Identities = 46/148 (31%), Positives = 77/148 (52%), Gaps = 5/148 (3%)

Query: 99  GVEFGARMITIDGK-QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT 157
           G++F +R IT+ G   + LQ+WD  GQ+    +   Y  GA    LVYDIT  ++F +L 
Sbjct: 34  GLDFFSRRITLPGSLNVTLQVWDIGGQQIGGKMLDKYIYGAQAVCLVYDITNSQSFENLE 93

Query: 158 TWLEDARQHSNSNMV---IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATN 214
            WL   ++ +  +     ++L+GNK+DL+  R+V  E+   FA+E+ +  +  SAK    
Sbjct: 94  DWLSVVKKVNEESETKPKMVLVGNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGDR 153

Query: 215 VEEAFIDTAKEIYE-KIQEGVFDITNEV 241
           V   F   A E+   K+ +   + +  V
Sbjct: 154 VFLCFQRIAAELLGVKLSQAELEQSQRV 181

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 81.1 bits (200), Expect = 5e-19
 Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 1/129 (0%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE-DA 163
               ID +   L I DTAGQ  F ++   Y R   G ++ Y +T R +F   + + E   
Sbjct: 41  TQARIDNEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTDRHSFQEASEFKELIT 100

Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           R     ++ ++L+GNK DL+ +R+V  EEG   ARE    F ETSA L   +++AF    
Sbjct: 101 RVRLTEDIPLVLVGNKVDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLV 160

Query: 224 KEIYEKIQE 232
           +EI  K   
Sbjct: 161 REIRRKESM 169

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 79.7 bits (197), Expect = 1e-18
 Identities = 37/112 (33%), Positives = 59/112 (52%), Gaps = 3/112 (2%)

Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
           +I+  +WDTAGQE F  +   YY     A++++D+T R T+ ++  W  D       N+ 
Sbjct: 48  KIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTSRVTYKNVPNWHRDL-VRVCENIP 106

Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK 224
           I+L GNK  +D +    K +   F R+  L + E SAK   N E+ F+  A+
Sbjct: 107 IVLCGNK--VDIKDRKVKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR 156

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 79.0 bits (196), Expect = 2e-18
 Identities = 29/54 (53%), Positives = 40/54 (74%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK 54
           + I+L+GNKSDL+  R+V  EE + FA+E+GL+F ETSAK   NV+EAF   A+
Sbjct: 106 IPIILVGNKSDLEDERQVSTEEAQQFAKENGLLFFETSAKTGENVDEAFESLAR 159

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 76.0 bits (188), Expect = 2e-17
 Identities = 27/54 (50%), Positives = 35/54 (64%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           I+L+GNK DL+  R+V  EEGE  A E G  F+ETSAK   N++E F    +EI
Sbjct: 107 IVLVGNKCDLENERQVSTEEGEALAEEWGCPFLETSAKTNINIDELFNTLVREI 160

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 76.0 bits (187), Expect = 9e-17
 Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 2/84 (2%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
            V +L+G+K DL+++R+V +EE E  A++ G+ ++ETSA+   NVEEAF    +EIYE+I
Sbjct: 110 PVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEEAFELLTQEIYERI 169

Query: 61  QEGVFDITNEANGIKIGPQHSPNN 84
           + G     +  +G+K G       
Sbjct: 170 KRGELCALDGWDGVKSG--FPAGR 191

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 74.5 bits (183), Expect = 2e-16
 Identities = 36/70 (51%), Positives = 46/70 (65%), Gaps = 4/70 (5%)

Query: 2   VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI----Y 57
           VIML+GNK+D+   R VK+E+GE  A+E+G+ FMETSAK   NVE AF   AKE+     
Sbjct: 108 VIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVELAFTAVAKELKHRSV 167

Query: 58  EKIQEGVFDI 67
           E+  E  F I
Sbjct: 168 EQPDEPKFKI 177

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 73.7 bits (182), Expect = 2e-16
 Identities = 29/54 (53%), Positives = 38/54 (70%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           I+L+GNK DL++ R V  EEG+  AR+ G  F+ETSAK   NV+EAF D  +EI
Sbjct: 108 IVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEAFYDLVREI 161

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 74.1 bits (183), Expect = 2e-16
 Identities = 29/54 (53%), Positives = 37/54 (68%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           I+L+GNK DL+  R V  EEG+  AR+ G  F+ETSAK   NV+EAF D  +EI
Sbjct: 110 IVLVGNKCDLENERVVSTEEGKELARQWGCPFLETSAKERINVDEAFYDLVREI 163

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 5/131 (3%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF---NH 155
           G +   R +++DG++  L ++D   QE    +  S  +     ++VY +T R +F   + 
Sbjct: 34  GDDTYERTVSVDGEEATLVVYDHWEQEDGMWLEDSCMQVGDAYVIVYSVTDRSSFEKASE 93

Query: 156 LTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNV 215
           L   L  ARQ  +  + I+L+GNKSDL   REV  +EG   A      F+ETSA L  NV
Sbjct: 94  LRIQLRRARQAED--IPIILVGNKSDLVRSREVSVQEGRACAVVFDCKFIETSAALQHNV 151

Query: 216 EEAFIDTAKEI 226
           +E F    +++
Sbjct: 152 DELFEGIVRQV 162

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 73.6 bits (181), Expect = 2e-16
 Identities = 39/122 (31%), Positives = 56/122 (45%), Gaps = 8/122 (6%)

Query: 104 ARMITIDGKQIKLQIWDTAGQEAF-----RSITRSYYRGAAGALLVYDITRRETFNHLTT 158
             +  +D  ++KL + DT G + F       + R   RGA   LLV D T RE+      
Sbjct: 37  VYVKELDKGKVKLVLVDTPGLDEFGGLGREELARLLLRGADLILLVVDSTDRESEEDAKL 96

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEE-GEVFAREHGLVFMETSAKLATNVEE 217
                R+     + I+L+GNK DL   REV++    E  A+  G+   E SAK    V+E
Sbjct: 97  --LILRRLRKEGIPIILVGNKIDLLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDE 154

Query: 218 AF 219
            F
Sbjct: 155 LF 156

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 74.4 bits (183), Expect = 3e-16
 Identities = 39/113 (34%), Positives = 62/113 (54%), Gaps = 3/113 (2%)

Query: 114 IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVI 173
           I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ TW  D  +    N+ I
Sbjct: 62  IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPI 120

Query: 174 MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           +L GNK D+  R+   K +   F R+  L + E SAK   N E+ F+  A+++
Sbjct: 121 VLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 171

Length = 219

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 72.4 bits (178), Expect = 8e-16
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query: 4   MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           +L+GNK DL  ++ V   E + FA E G+ F+ETSAK ATNVEEAF+  A+EI ++
Sbjct: 111 LLVGNKCDLTDKKVVDYTEAKEFADELGIPFLETSAKNATNVEEAFMTMAREIKKR 166

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|128473 smart00176, RAN, Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

 Score = 72.7 bits (178), Expect = 1e-15
 Identities = 40/128 (31%), Positives = 67/128 (52%), Gaps = 3/128 (2%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVE    +   +   I+  +WDTAGQE F  +   YY     A++++D+T R T+ ++  
Sbjct: 29  GVEVHPLVFHTNRGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPN 88

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W  D  +    N+ I+L GNK D+  R+   K +   F R+  L + + SAK   N E+ 
Sbjct: 89  WHRDLVRVC-ENIPIVLCGNKVDVKDRK--VKAKSITFHRKKNLQYYDISAKSNYNFEKP 145

Query: 219 FIDTAKEI 226
           F+  A+++
Sbjct: 146 FLWLARKL 153

Ran is involved in the active transport of proteins through nuclear pores. Length = 200

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 69.2 bits (170), Expect = 8e-15
 Identities = 25/55 (45%), Positives = 39/55 (70%)

Query: 2   VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           +I+L+GNK+DL  +R+V  EEGE  A+E+  +F+ETSAK   NV++ F   A+ +
Sbjct: 107 IIVLVGNKTDLSDKRQVSTEEGEKKAKENNAMFIETSAKAGHNVKQLFKKIAQAL 161

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133344 cd04144, Ras2, Rat sarcoma (Ras) family 2 of small guanosine triphosphatases (GTPases)

 Score = 67.6 bits (165), Expect = 6e-14
 Identities = 27/62 (43%), Positives = 34/62 (54%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62
           IM++GNK D    REV  EEG   AR  G  F+E SAK   NVE AF    + + ++ Q 
Sbjct: 109 IMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVNVERAFYTLVRALRQQRQG 168

Query: 63  GV 64
           G 
Sbjct: 169 GQ 170

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 190

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 68.2 bits (167), Expect = 6e-14
 Identities = 41/128 (32%), Positives = 66/128 (51%), Gaps = 3/128 (2%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVE        +   I   +WDTAGQE F  +   YY     A++++D+T R T+ ++  
Sbjct: 43  GVEVHPLKFYTNCGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTSRITYKNVPN 102

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W  D  +    N+ I+L+GNK D+   R+VK  +   F R+  L + + SAK   N E+ 
Sbjct: 103 WHRDIVRVCE-NIPIVLVGNKVDV-KDRQVKARQ-ITFHRKKNLQYYDISAKSNYNFEKP 159

Query: 219 FIDTAKEI 226
           F+  A+ +
Sbjct: 160 FLWLARRL 167

Length = 215

>gnl|CDD|206696 cd04113, Rab4, Rab GTPase family 4 (Rab4)

 Score = 66.7 bits (163), Expect = 9e-14
 Identities = 30/56 (53%), Positives = 40/56 (71%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           +VI+L+GNK DL+  REV   E   FA+E+GL+F+ETSA    NVEEAF+  A+ I
Sbjct: 106 IVIILVGNKKDLEDDREVTFLEASRFAQENGLLFLETSALTGENVEEAFLKCARSI 161

Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 66.3 bits (162), Expect = 1e-13
 Identities = 28/57 (49%), Positives = 41/57 (71%), Gaps = 1/57 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVF-METSAKLATNVEEAFIDTAKEI 56
           +V++LIGNK DL+ +REV  EE    A  +G++  +ETSAK ++NVEEAF+  A E+
Sbjct: 109 VVLLLIGNKCDLEEQREVLFEEACTLAEHYGILAVLETSAKESSNVEEAFLLMATEL 165

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 66.6 bits (163), Expect = 2e-13
 Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 15/123 (12%)

Query: 111 GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQHSNS 169
           GK I+L +WDTAGQE +  +    Y      L+ Y +    +  N    W  +   H   
Sbjct: 49  GKIIELALWDTAGQEDYDRLRPLSYPDVDVILICYSVDNPTSLDNVEDKWYPEVN-HFCP 107

Query: 170 NMVIMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKLATNVE 216
              I+L+G K+DL   +             V  E+GE  A+  G V ++E SAKL  NV+
Sbjct: 108 GTPIVLVGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVD 167

Query: 217 EAF 219
           E F
Sbjct: 168 EVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133330 cd04130, Wrch_1, Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42

 Score = 65.5 bits (160), Expect = 3e-13
 Identities = 38/131 (29%), Positives = 66/131 (50%), Gaps = 16/131 (12%)

Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT-WLEDARQ 165
           + +DGK ++LQ+ DTAGQ+ F  +    Y      LL + +    +F +++  W+ + R+
Sbjct: 41  VLVDGKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVNPSSFQNISEKWIPEIRK 100

Query: 166 HSNSNMVIMLIGNKSDL---------DAR---REVKKEEGEVFAREHGLV-FMETSAKLA 212
           H N    I+L+G ++DL          AR   + V +   +  A + G   ++E SA   
Sbjct: 101 H-NPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACEYIECSALTQ 159

Query: 213 TNVEEAFIDTA 223
            N++E F DTA
Sbjct: 160 KNLKEVF-DTA 169

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 65.7 bits (160), Expect = 5e-13
 Identities = 37/92 (40%), Positives = 52/92 (56%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           +VIM+ GNKSDL+  R V +E+G+  A + GL F+ETSA  ATNVE+AF     EIY  I
Sbjct: 118 IVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATNVEKAFQTILLEIYHII 177

Query: 61  QEGVFDITNEANGIKIGPQHSPNNPSLPSGSS 92
            +        A    +  Q +  N +  SG++
Sbjct: 178 SKKALAAQEAAANSGLPGQGTTINVADTSGNN 209

Length = 216

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 30/63 (47%), Positives = 40/63 (63%), Gaps = 1/63 (1%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62
           I+L+GNKSDL   R+V  EEG+  A   G  F+E+SAK   NVEEAF    +EI EK++ 
Sbjct: 109 IVLVGNKSDLHMERQVSAEEGKKLAESWGAAFLESSAKENENVEEAFELLIEEI-EKVEN 167

Query: 63  GVF 65
            + 
Sbjct: 168 PLP 170

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 62.7 bits (153), Expect = 2e-12
 Identities = 30/60 (50%), Positives = 41/60 (68%), Gaps = 5/60 (8%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
            V ML+GNK D    REV +EEG+ FAR+H ++F+ETSAK    V++AF    +E+ EKI
Sbjct: 107 AVKMLVGNKIDK-ENREVTREEGQKFARKHNMLFIETSAKTRIGVQQAF----EELVEKI 161

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 45/152 (29%), Positives = 70/152 (46%), Gaps = 20/152 (13%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV F  + I+I G +I   IWD  GQ  F ++     + A   L ++D+TR+ T N +  
Sbjct: 34  GVNFMEKTISIRGTEITFSIWDLGGQREFINMLPLVCKDAVAILFMFDLTRKSTLNSIKE 93

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDAR-REVKKEEGEVFAREHG------LVFMETSAKL 211
           W   AR  + + + I L+G K DL A     ++EE    AR++       L+F   S   
Sbjct: 94  WYRQARGFNKTAIPI-LVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIF--CSTSH 150

Query: 212 ATNVEEAF-IDTAKEIYEKIQEGVFDITNEVD 242
           + NV++ F    AK         VFD+   + 
Sbjct: 151 SINVQKIFKFVLAK---------VFDLPLTIP 173

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 61.5 bits (150), Expect = 6e-12
 Identities = 22/56 (39%), Positives = 34/56 (60%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           + ++++GNK DL+ +R V K E E +A+  G    ETSAK    +EE F+  AK +
Sbjct: 106 ISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIEELFLSLAKRM 161

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 61.3 bits (149), Expect = 8e-12
 Identities = 23/55 (41%), Positives = 36/55 (65%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
           ++L+GNK DL+ +R+V  EE    A + G+ ++ETSAK   NV++ F D  +EI 
Sbjct: 108 LLLVGNKCDLEDKRQVSVEEAANLAEQWGVNYVETSAKTRANVDKVFFDLVREIR 162

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 61.3 bits (149), Expect = 9e-12
 Identities = 24/54 (44%), Positives = 40/54 (74%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           ++L+GNK+DL+ +R+V +EEG+  AR+  + ++ETSAK   NV++AF D  + I
Sbjct: 110 MILVGNKADLEHQRQVSREEGQELARQLKIPYIETSAKDRVNVDKAFHDLVRVI 163

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|215587 PLN03118, PLN03118, Rab family protein; Provisional

 Score = 60.5 bits (146), Expect = 3e-11
 Identities = 35/85 (41%), Positives = 51/85 (60%), Gaps = 5/85 (5%)

Query: 2   VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK-- 59
           V ML+GNK D ++ R+V +EEG   A+EHG +F+E SAK   NVE+ F + A +I E   
Sbjct: 122 VKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQCFEELALKIMEVPS 181

Query: 60  -IQEGVFDITNEANGIKIGPQHSPN 83
            ++EG      + N +K  P+H P 
Sbjct: 182 LLEEG--STAVKRNILKQKPEHQPP 204

Length = 211

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 60.3 bits (146), Expect = 3e-11
 Identities = 37/128 (28%), Positives = 59/128 (46%), Gaps = 11/128 (8%)

Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQ 165
           I +DG  ++L +WDTAGQE F  +    Y      +L + +   ++  N  + WL + R 
Sbjct: 41  IFVDGLAVELSLWDTAGQEEFDRLRSLSYADTHVIMLCFSVDNPDSLENVESKWLAEIRH 100

Query: 166 HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLV---------FMETSAKLATNVE 216
           H    + ++L+  K DL   R  +       + E GL          ++E SAKL   V 
Sbjct: 101 HC-PGVKLVLVALKCDLREPRNERDRGTHTISYEEGLAVAKRINACRYLECSAKLNRGVN 159

Query: 217 EAFIDTAK 224
           EAF + A+
Sbjct: 160 EAFTEAAR 167

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206662 cd01870, RhoA_like, Ras homology family A (RhoA)-like includes RhoA, RhoB and RhoC

 Score = 59.7 bits (145), Expect = 3e-11
 Identities = 43/128 (33%), Positives = 61/128 (47%), Gaps = 15/128 (11%)

Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQ 165
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  N    W  + + 
Sbjct: 42  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 100

Query: 166 HSNSNMVIMLIGNKSDLDA----RRE--------VKKEEGEVFAREHG-LVFMETSAKLA 212
           H   N+ I+L+GNK DL       RE        VK EEG   A + G   ++E SAK  
Sbjct: 101 HFCPNVPIILVGNKKDLRNDEHTIRELAKMKQEPVKPEEGRAMAEKIGAFGYLECSAKTK 160

Query: 213 TNVEEAFI 220
             V E F 
Sbjct: 161 EGVREVFE 168

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranylgeranylated forms; however, RhoB can be present in palmitoylated, farnesylated, and geranylgeranylated forms. RhoA and RhoC are highly relevant for tumor progression and invasiveness; however, RhoB has recently been suggested to be a tumor suppressor. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 175

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 59.5 bits (144), Expect = 4e-11
 Identities = 26/54 (48%), Positives = 36/54 (66%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           ++L+GNK DL+  R V KE+G+  AR+ G  F+ETSAK   NV E F D  ++I
Sbjct: 109 MILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNEIFYDLVRQI 162

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 60.3 bits (146), Expect = 4e-11
 Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 33/137 (24%)

Query: 116 LQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIML 175
           + IWDTAG+E F  +   Y RGAA  +L YD++  ++   L          +N + +  +
Sbjct: 46  ISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAV 105

Query: 176 IGNKSDL-------------------DARREVKKEEGEVFARE----HGL---------- 202
           +GNK DL                   + +R+V  E+ + F +       L          
Sbjct: 106 VGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKRINKYKMLDEDLSPAAEK 165

Query: 203 VFMETSAKLATNVEEAF 219
           +  ETSAK   NV+E F
Sbjct: 166 MCFETSAKTGYNVDELF 182

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 59.1 bits (143), Expect = 6e-11
 Identities = 23/56 (41%), Positives = 37/56 (66%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           ++ +L+GNK DL  RREV ++  E F+    + ++ETSAK + NVE+ F+D A  +
Sbjct: 113 VITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKLFLDLACRL 168

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 59.5 bits (144), Expect = 6e-11
 Identities = 27/60 (45%), Positives = 42/60 (70%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62
           ++L+GNK DLD+ R+V   EG+  A+  G+ F+ETSAK   NV+EAF +  +EI + ++E
Sbjct: 113 MILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDEAFYELVREIRKYLKE 172

Length = 189

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 27/55 (49%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDTAKEI 56
           ++L+GNK DL+  R V KEEG+  AR+ G   F+ETSAK   NV+E F D  ++I
Sbjct: 109 MILVGNKCDLEDERVVSKEEGQNLARQWGNCPFLETSAKSKINVDEIFYDLVRQI 163

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 26/54 (48%), Positives = 34/54 (62%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           I+L+GNK DL++ REV   EG   A E G  FMETSAK  T V E F +  +++
Sbjct: 109 IILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVNELFAEIVRQM 162

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 58.3 bits (141), Expect = 1e-10
 Identities = 25/47 (53%), Positives = 27/47 (57%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
           IML+GNK D    REV   EG   AR     FMETSAK   NV+E F
Sbjct: 111 IMLVGNKCDESPSREVSSSEGAALARTWNCAFMETSAKTNHNVQELF 157

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206644 cd00878, Arf_Arl, ADP-ribosylation factor(Arf)/Arf-like (Arl) small GTPases

 Score = 57.2 bits (139), Expect = 2e-10
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 10/119 (8%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR----ETFNHLTTWLEDA 163
           T++ K +K  +WD  GQ+  R + + YY    G + V D + R    E  N L   L + 
Sbjct: 37  TVEYKNVKFTVWDVGGQDKIRPLWKHYYENTDGLIFVVDSSDRERIEEAKNELHKLLNEE 96

Query: 164 RQHSNSNMVIMLIGNKSDLDARR---EVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
                    ++++ NK DL       E+ +  G    +         SA     ++E  
Sbjct: 97  E---LKGAPLLILANKQDLPGALTESELIELLGLESIKGRRWHIQPCSAVTGDGLDEGL 152

Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thus, despite their significant sequence homologies, Arf family proteins may regulate unrelated functions. Length = 158

>gnl|CDD|206702 cd04129, Rho2, Ras homology family 2 (Rho2) of small guanosine triphosphatases (GTPases)

 Score = 57.1 bits (138), Expect = 4e-10
 Identities = 35/125 (28%), Positives = 63/125 (50%), Gaps = 13/125 (10%)

Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT-WLEDARQ 165
             +DGK ++L +WDTAGQE +  +    Y  A   L+ + I   ++  ++ T W+E+ R+
Sbjct: 42  CRVDGKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAIDTPDSLENVRTKWIEEVRR 101

Query: 166 HSNSNMVIMLIGNKSDL--DA--------RREVKKEEGEVFARE-HGLVFMETSAKLATN 214
           +   N+ ++L+G K DL  +A           V  ++ ++ AR      +ME SA     
Sbjct: 102 YC-PNVPVILVGLKKDLRQEAVAKGNYATDEFVPIQQAKLVARAIGAKKYMECSALTGEG 160

Query: 215 VEEAF 219
           V++ F
Sbjct: 161 VDDVF 165

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors). Length = 190

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 56.1 bits (136), Expect = 7e-10
 Identities = 21/60 (35%), Positives = 39/60 (65%), Gaps = 1/60 (1%)

Query: 4   MLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62
           +++GNK DL+ +R+V  ++ + + +  G + + ETSAK A NV++AF   A+   E+ +E
Sbjct: 113 VVLGNKIDLEEKRQVSTKKAQQWCKSKGNIPYFETSAKEAINVDQAFETIARLALEQEKE 172

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 55.6 bits (134), Expect = 9e-10
 Identities = 25/55 (45%), Positives = 40/55 (72%), Gaps = 1/55 (1%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDTAKEI 56
           ++L+GNK+DL+  R+V +E+G   +++ G V F ETSA+  TNV+E FID  ++I
Sbjct: 109 MVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVDEVFIDLVRQI 163

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 55.5 bits (134), Expect = 9e-10
 Identities = 24/54 (44%), Positives = 35/54 (64%), Gaps = 1/54 (1%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           ++L+GNK DL A R V   +G+  A+ +G+ ++ETSAK    VEEAF    +EI
Sbjct: 109 MVLVGNKCDL-AARTVSTRQGQDLAKSYGIPYIETSAKTRQGVEEAFYTLVREI 161

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206736 cd04173, Rnd2_Rho7, Rnd2/Rho7 GTPases

 Score = 55.8 bits (134), Expect = 2e-09
 Identities = 36/125 (28%), Positives = 65/125 (52%), Gaps = 14/125 (11%)

Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN 168
           ID  +I+L +WDT+G   + ++    Y  +   L+ +DI+R ET + +    +   Q   
Sbjct: 44  IDKHRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISRPETLDSVLKKWQGETQEFC 103

Query: 169 SNMVIMLIGNK----SDLDARREVKK--------EEGEVFAREHGLV-FMETSAKLATN- 214
            N  ++L+G K    +DL   RE+ K        E+G + AR+ G V ++E S++++ N 
Sbjct: 104 PNAKLVLVGCKLDMRTDLSTLRELSKQRLIPVTHEQGSLLARQLGAVAYVECSSRMSENS 163

Query: 215 VEEAF 219
           V + F
Sbjct: 164 VRDVF 168

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in spermatocytes and early spermatids, with male-germ-cell Rac GTPase-activating protein (MgcRacGAP), where it localizes to the Golgi-derived pro-acrosomal vesicle. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 221

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 53.2 bits (128), Expect = 3e-09
 Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)

Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT---TWLEDA 163
           + +DG    L IWD  G+E  +     + + A   LLVYD+T RE+ N ++    WL + 
Sbjct: 41  LEVDGDTGLLNIWDFGGREELKFEHIIFMKWADAILLVYDLTDRESLNEVSRLIAWLPNL 100

Query: 164 RQHSNSNMVIMLIGNK 179
           R+     + ++L+GNK
Sbjct: 101 RK-LGGKIPVILVGNK 115

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 55.5 bits (134), Expect = 3e-09
 Identities = 34/129 (26%), Positives = 63/129 (48%), Gaps = 10/129 (7%)

Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL---- 156
           +F  ++ +I G+  +L I DT+G   F ++ R         +LV+ +  RE+F  +    
Sbjct: 35  DFHRKLYSIRGEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDNRESFEEVCRLR 94

Query: 157 -----TTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGE-VFAREHGLVFMETSAK 210
                T      +   N  + +++ GNK+D D  REV+++E E +   +    + E SAK
Sbjct: 95  EQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAK 154

Query: 211 LATNVEEAF 219
             +N++E F
Sbjct: 155 KNSNLDEMF 163

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 53.3 bits (128), Expect = 6e-09
 Identities = 25/60 (41%), Positives = 35/60 (58%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62
           ++L+GNK DL+ +R+V  EEG   ARE    F ETSA L   +++AF    +EI  K   
Sbjct: 110 LVLVGNKVDLEQQRQVTTEEGRNLAREFNCPFFETSAALRFYIDDAFHGLVREIRRKESM 169

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|206688 cd04101, RabL4, Rab GTPase-like family 4 (Rab-like4)

 Score = 52.9 bits (127), Expect = 9e-09
 Identities = 21/54 (38%), Positives = 29/54 (53%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK 54
              +L+GNK DL  RREV   + +  A+ + L F ETSAK     E  F+  A+
Sbjct: 111 TPGVLVGNKCDLTDRREVDAAQAQALAQANTLKFYETSAKEGVGYEAPFLSLAR 164

RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. Length = 167

>gnl|CDD|206713 cd04146, RERG_RasL11_like, Ras-related and Estrogen-Regulated Growth inhibitor (RERG) and Ras-like 11 (RasL11)-like families

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 21/55 (38%), Positives = 32/55 (58%), Gaps = 1/55 (1%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL-ATNVEEAFIDTAKEI 56
           ++L+GNK+DL   R+V  EEG+  A E G +F E SA      V+  F +  +E+
Sbjct: 110 VILVGNKADLLHSRQVSTEEGQKLALELGCLFFEVSAAENYLEVQNVFHELCREV 164

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tumor suppressor activity. Length = 166

>gnl|CDD|206705 cd04133, Rop_like, Rho-related protein from plants (Rop)-like

 Score = 52.9 bits (127), Expect = 1e-08
 Identities = 38/129 (29%), Positives = 64/129 (49%), Gaps = 14/129 (10%)

Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQ 165
           + +DG  + L +WDTAGQE +  +    YRGA   LL + +  + ++ N L  W+ + R 
Sbjct: 42  VVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENVLKKWIPELR- 100

Query: 166 HSNSNMVIMLIGNKSDLDARRE----------VKKEEGEVFAREHGL-VFMETSAKLATN 214
           H    + I+L+G K DL   ++          +   +GE   ++ G   ++E S+K   N
Sbjct: 101 HYAPGVPIVLVGTKLDLRDDKQFFADHPGAVPITTAQGEELRKQIGAAAYIECSSKTQQN 160

Query: 215 VEEAFIDTA 223
           V+  F D A
Sbjct: 161 VKAVF-DAA 168

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example, Rop1, Rop3, and Rop5 are all involved in pollen-tube growth; Rop2 plays a role in response to low-oxygen environments, cell-morphology, and root-hair development; root-hair development is also regulated by Rop4 and Rop6; Rop6 is also responsible for ABA response, and ABA response is also regulated by Rop10. Plants retain some of the regulatory mechanisms that are shared by other members of the Rho family, but have also developed a number of unique modes for regulating Rops. Unique RhoGEFs have been identified that are exclusively active toward Rop proteins, such as those containing the domain PRONE (plant-specific Rop nucleotide exchanger). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 173

>gnl|CDD|206703 cd04131, Rnd, Rho family GTPase subfamily Rnd includes Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 36/126 (28%), Positives = 63/126 (50%), Gaps = 16/126 (12%)

Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQHS 167
           +D ++I+L +WDT+G   + ++    Y  +   L+ +DI+R ET  + L  W  + R+  
Sbjct: 44  VDKQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEVREFC 103

Query: 168 NSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHG-LVFMETSAKLATN 214
             N  ++L+G KSDL              +  V  E+G   A++ G   ++E SAK + N
Sbjct: 104 -PNTPVLLVGCKSDLRTDLSTLTELSNKRQIPVSHEQGRNLAKQIGAAAYVECSAKTSEN 162

Query: 215 -VEEAF 219
            V + F
Sbjct: 163 SVRDVF 168

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 176

>gnl|CDD|133277 cd01875, RhoG, Ras homolog family, member G (RhoG) of small guanosine triphosphatases (GTPases)

 Score = 52.7 bits (126), Expect = 2e-08
 Identities = 31/133 (23%), Positives = 60/133 (45%), Gaps = 15/133 (11%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQH 166
            +DG+ + L +WDTAGQE +  +    Y      ++ + I    ++ ++   W  +   H
Sbjct: 45  AVDGRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIASPSSYENVRHKWHPEVCHH 104

Query: 167 SNSNMVIMLIGNKSDLDARREVKK------------EEGEVFARE-HGLVFMETSAKLAT 213
              N+ I+L+G K DL    +  K            ++G   A++ H + ++E SA    
Sbjct: 105 C-PNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKYLECSALNQD 163

Query: 214 NVEEAFIDTAKEI 226
            V+E F +  + +
Sbjct: 164 GVKEVFAEAVRAV 176

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 191

>gnl|CDD|206700 cd04127, Rab27A, Rab GTPase family 27a (Rab27a)

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 48
           I+LIGNK+DL  +REV + +    A ++G+ + ETSA    NVE+A
Sbjct: 123 IVLIGNKADLPDQREVSERQARELADKYGIPYFETSAATGQNVEKA 168

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated insulin secretion, making it a potential target for diabetes therapy. When bound to JFC1 in prostate cells, Rab27a is believed to regulate the exocytosis of prostate- specific markers. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 180

>gnl|CDD|133319 cd04119, RJL, Rab GTPase family J-like (RabJ-like)

 Score = 50.4 bits (121), Expect = 8e-08
 Identities = 18/48 (37%), Positives = 26/48 (54%)

Query: 2   VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
           V+++  NK DL   R V ++EG ++A   G  + ETSA     V E F
Sbjct: 112 VVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGEGVNEMF 159

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 168

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 50.4 bits (121), Expect = 1e-07
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)

Query: 5   LIGNKSDLDARRE-VKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDTAKEIYEKIQE 62
           L+ NK DL   R     E+ + F +E+G + + ETSAK   N+EEA     K I +  + 
Sbjct: 115 LLANKCDLKKERLAKDPEQMDQFCKENGFIGWFETSAKENINIEEAMRFLVKNILKNDKG 174

Query: 63  GVFDITNEANGIKI 76
                 +E N I +
Sbjct: 175 LQSPEPDEDNVIDL 188

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|206714 cd04147, Ras_dva, Ras - dorsal-ventral anterior localization (Ras-dva) family

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 31/115 (26%), Positives = 54/115 (46%), Gaps = 6/115 (5%)

Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN 168
           + G ++ + I DT+G  +F ++ +   +      LVY +   E+F  +    E+  +   
Sbjct: 42  VAGVKVTIDILDTSGSYSFPAMRKLSIQNGDAFALVYSVDDPESFEEVKRLREEILEVKE 101

Query: 169 SNMV-IMLIGNKSDLDARREVKKEEGEVFAR---EHGLVFMETSAKLATNVEEAF 219
              V I+++GNK D  A R+V+  +          +G  F+E SAK   NV E F
Sbjct: 102 DKFVPIVVVGNKIDSLAERQVEAADALSTVELDWNNG--FVEASAKDNENVTEVF 154

Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 197

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 50.1 bits (120), Expect = 2e-07
 Identities = 24/54 (44%), Positives = 32/54 (59%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           I+L+GNKSDL   REV  +EG   A      F+ETSA L  NV+E F    +++
Sbjct: 109 IILVGNKSDLVRSREVSVQEGRACAVVFDCKFIETSAALQHNVDELFEGIVRQV 162

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

>gnl|CDD|206663 cd01871, Rac1_like, Ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1)-like consists of Rac1, Rac2 and Rac3

 Score = 49.0 bits (117), Expect = 2e-07
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)

Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT-WLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 42  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 101

Query: 166 HSNSNMVIMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKLA 212
           H   N  I+L+G K DL   ++            +   +G   A+E G V ++E SA   
Sbjct: 102 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 160

Query: 213 TNVEEAF 219
             ++  F
Sbjct: 161 RGLKTVF 167

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleotide association and is more efficiently activated by the RacGEF Tiam1. Both Rac1 and Rac3 have been implicated in the regulation of cell migration and invasion in human metastatic breast cancer. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206725 cd04160, Arfrp1, Arf-related protein 1 (Arfrp1)

 Score = 48.5 bits (116), Expect = 3e-07
 Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 8/118 (6%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
           TI+  + +L  WD  GQE  RS+   YY  + G + V D T RE FN   +  E    + 
Sbjct: 45  TIEVGKARLMFWDLGGQEELRSLWDKYYAESHGVIYVIDSTDRERFNESKSAFEKVINNE 104

Query: 168 N-SNMVIMLIGNKSDLDARREVKKEEGEVFA------REHGLVFMETSAKLATNVEEA 218
               + ++++ NK DL     V  E  EVF            +    SA     VEE 
Sbjct: 105 ALEGVPLLVLANKQDLPDALSV-AEIKEVFDDCIALIGRRDCLVQPVSALEGEGVEEG 161

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development. Length = 168

>gnl|CDD|206699 cd04120, Rab12, Rab GTPase family 12 (Rab12)

 Score = 48.1 bits (114), Expect = 8e-07
 Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 3/86 (3%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 61
           ++L+GNK D +  RE+ +++GE FA++  G+ F E SAK   NV+E F+    +I +K+ 
Sbjct: 108 LLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKKMP 167

Query: 62  EGVF--DITNEANGIKIGPQHSPNNP 85
             +   +++N    ++  P+  P  P
Sbjct: 168 LDILRNELSNSILSLQPEPEIPPELP 193

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 202

>gnl|CDD|128474 smart00177, ARF, ARF-like small GTPases; ARF, ADP-ribosylation factor

 Score = 46.5 bits (110), Expect = 2e-06
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA-RQH 166
           T+  K I   +WD  GQ+  R + R YY    G + V D   R+  +     L     + 
Sbjct: 51  TVTYKNISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDRIDEAREELHRMLNED 110

Query: 167 SNSNMVIMLIGNKSDL 182
              + VI++  NK DL
Sbjct: 111 ELRDAVILVFANKQDL 126

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop). Length = 175

>gnl|CDD|206735 cd04172, Rnd3_RhoE_Rho8, Rnd3/RhoE/Rho8 GTPases

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 23/76 (30%), Positives = 41/76 (53%)

Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN 168
           ID ++I+L +WDT+G   + ++    Y  +   L+ +DI+R ET + +    +   Q   
Sbjct: 48  IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 107

Query: 169 SNMVIMLIGNKSDLDA 184
            N  ++L+G KSDL  
Sbjct: 108 PNTKMLLVGCKSDLRT 123

Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight junction formation. Rnd3/RhoE is underexpressed in prostate cancer cells both in vitro and in vivo; re-expression of Rnd3/RhoE suppresses cell cycle progression and increases apoptosis, suggesting it may play a role in tumor suppression. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 182

>gnl|CDD|173423 PTZ00133, PTZ00133, ADP-ribosylation factor; Provisional

 Score = 44.8 bits (106), Expect = 7e-06
 Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 15/83 (18%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
           T++ K +K  +WD  GQ+  R + R YY+   G + V D   RE          DAR+  
Sbjct: 55  TVEYKNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDRERIG-------DAREEL 107

Query: 168 NS--------NMVIMLIGNKSDL 182
                     + V+++  NK DL
Sbjct: 108 ERMLSEDELRDAVLLVFANKQDL 130

Length = 182

>gnl|CDD|133353 cd04153, Arl5_Arl8, Arf-like 5 (Arl5) and 8 (Arl8) GTPases

 Score = 44.6 bits (106), Expect = 7e-06
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 103 GARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED 162
           G+ +  I  K I+  +WD  GQE+ RS   +YY      +LV D T RE        L  
Sbjct: 48  GSNVEEIVYKNIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRERLPLTKEELYK 107

Query: 163 ARQHSN-SNMVIMLIGNKSDL 182
              H +    V++++ NK DL
Sbjct: 108 MLAHEDLRKAVLLVLANKQDL 128

Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date. Length = 174

>gnl|CDD|185444 PTZ00099, PTZ00099, rab6; Provisional

 Score = 44.0 bits (103), Expect = 1e-05
 Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 4/76 (5%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           ++I L+GNK+DL   R+V  EEG   A+E+  +F ETSAK   N++  F    K+I  K+
Sbjct: 86  VIIALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLF----KKIAAKL 141

Query: 61  QEGVFDITNEANGIKI 76
                  +N+AN + I
Sbjct: 142 PNLDNSNSNDANVVDI 157

Length = 176

>gnl|CDD|206741 cd09914, RocCOR, Ras of complex proteins (Roc) C-terminal of Roc (COR) domain family

 Score = 43.9 bits (104), Expect = 1e-05
 Identities = 26/123 (21%), Positives = 49/123 (39%), Gaps = 21/123 (17%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSI------TRSYYRGAAGALLVYDITRRETFNHLTT 158
           ++   + K+I+L +WD  GQE + +       +RS Y      LLV+D+   +  + +  
Sbjct: 42  KIPAPERKKIRLNVWDFGGQEIYHATHQFFLTSRSLY------LLVFDLRTGDEVSRVPY 95

Query: 159 WLEDARQHSNSNMVIMLIGNKSD----LDARREVKKEEGEVFAREHGLVFMETSAKLATN 214
           WL   +     + VI L+G   D     D  ++   ++      +        S K    
Sbjct: 96  WLRQIKAFGGVSPVI-LVGTHIDESCDEDILKKALNKKFPAIIND----IHFVSCKNGKG 150

Query: 215 VEE 217
           + E
Sbjct: 151 IAE 153

RocCOR (or Roco) protein family is characterized by a superdomain containing a Ras-like GTPase domain, called Roc (Ras of complex proteins), and a characteristic second domain called COR (C-terminal of Roc). A kinase domain and diverse regulatory domains are also often found in Roco proteins. Their functions are diverse; in Dictyostelium discoideum, which encodes 11 Roco proteins, they are involved in cell division, chemotaxis and development, while in human, where 4 Roco proteins (LRRK1, LRRK2, DAPK1, and MFHAS1) are encoded, these proteins are involved in epilepsy and cancer. Mutations in LRRK2 (leucine-rich repeat kinase 2) are known to cause familial Parkinson's disease. Length = 161

>gnl|CDD|206657 cd01865, Rab3, Rab GTPase family 3 contains Rab3A, Rab3B, Rab3C and Rab3D

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 19/47 (40%), Positives = 27/47 (57%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
           ++L+GNK D++  R V  E G   A + G  F E SAK   NV++ F
Sbjct: 109 VILVGNKCDMEDERVVSAERGRQLADQLGFEFFEASAKENINVKQVF 155

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206737 cd04174, Rnd1_Rho6, Rnd1/Rho6 GTPases

 Score = 44.3 bits (104), Expect = 2e-05
 Identities = 30/117 (25%), Positives = 56/117 (47%), Gaps = 15/117 (12%)

Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH-LTTWLEDARQ 165
           +  + ++++L +WDT+G   + ++    Y  +   LL +DI+R E F+  L  W  +   
Sbjct: 54  LETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPEIFDSALKKWRAEILD 113

Query: 166 HSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGL-VFMETSA 209
           +  S   I+LIG K+DL              +  +  E+G   A++ G   ++E SA
Sbjct: 114 YCPSTR-ILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCAMAKQLGAEAYLECSA 169

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 232

>gnl|CDD|206716 cd04149, Arf6, ADP ribosylation factor 6 (Arf6)

 Score = 43.2 bits (102), Expect = 2e-05
 Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 15/83 (18%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH- 166
           T+  K +K  +WD  GQ+  R + R YY G  G + V D   R         +++ARQ  
Sbjct: 47  TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADR-------DRIDEARQEL 99

Query: 167 -------SNSNMVIMLIGNKSDL 182
                     + ++++  NK DL
Sbjct: 100 HRIINDREMRDALLLVFANKQDL 122

Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed to function at multiple sites on the plasma membrane through interaction with a specific set of GEFs, GAPs, and effectors. Arf6 has been implicated in breast cancer and melanoma cell invasion, and in actin remodelling at the invasion site of Chlamydia infection. Length = 168

>gnl|CDD|206724 cd04159, Arl10_like, Arf-like 9 (Arl9) and 10 (Arl10) GTPases

 Score = 43.1 bits (102), Expect = 3e-05
 Identities = 28/84 (33%), Positives = 38/84 (45%), Gaps = 3/84 (3%)

Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V F  R +T     IK  +WD  GQ  FRS+   Y RG    + V D   RE        
Sbjct: 32  VGFNMRKVTKGNVTIK--VWDLGGQPRFRSMWERYCRGVNAIVYVVDAADREKLEVAKNE 89

Query: 160 LEDARQHSNSNMVIMLI-GNKSDL 182
           L D  +  +   + +L+ GNK+DL
Sbjct: 90  LHDLLEKPSLEGIPLLVLGNKNDL 113

Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved. Length = 159

>gnl|CDD|206719 cd04152, Arl4_Arl7, Arf-like 4 (Arl4) and 7 (Arl7) GTPases

 Score = 42.5 bits (100), Expect = 4e-05
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 1/73 (1%)

Query: 111 GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-ARQHSNS 169
            K +    WD  GQE  R + +SY R   G + V D    E      T L    +   N 
Sbjct: 49  AKGVTFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDVERMEEAKTELHKITKFSENQ 108

Query: 170 NMVIMLIGNKSDL 182
            + ++++ NK DL
Sbjct: 109 GVPVLVLANKQDL 121

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily. Length = 183

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 42.3 bits (99), Expect = 5e-05
 Identities = 21/46 (45%), Positives = 33/46 (71%)

Query: 4   MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
           +LIGNK+D + +R+V  E+G   A+E+G+ F ETSA    N++E+F
Sbjct: 109 ILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNKNIKESF 154

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 42.1 bits (100), Expect = 6e-05
 Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 18/67 (26%)

Query: 3   IMLIGNKSDLDARRE--------------VKKEEGEVFAREHGLV-FMETSAKLATNVEE 47
           I+L+G K DL   R+              +  EEGE  A+E G V +ME SA     ++E
Sbjct: 107 IILVGTKIDL---RDDGNTLKKLEKKQKPITPEEGEKLAKEIGAVKYMECSALTQEGLKE 163

Query: 48  AFIDTAK 54
            F +  +
Sbjct: 164 VFDEAIR 170

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 42.4 bits (100), Expect = 8e-05
 Identities = 17/48 (35%), Positives = 30/48 (62%), Gaps = 1/48 (2%)

Query: 3   IMLIGNKSDLDARREVKKEEGE-VFAREHGLVFMETSAKLATNVEEAF 49
           +++ GNK+D D  REV+++E E +   +    + E SAK  +N++E F
Sbjct: 116 MVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEVSAKKNSNLDEMF 163

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 41.8 bits (98), Expect = 9e-05
 Identities = 21/46 (45%), Positives = 29/46 (63%)

Query: 4   MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
           +L+GNK+D   R+ V+ E+   FA + G+   ETSAK   NVEE F
Sbjct: 114 VLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEMF 159

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 21/54 (38%), Positives = 34/54 (62%), Gaps = 2/54 (3%)

Query: 4   MLIGNKSDLDARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDTAKEI 56
           +++GNK D+   R+V  EE + + R++G   + ETSAK ATNV  AF +  + +
Sbjct: 118 VILGNKIDIP-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 170

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|197554 smart00174, RHO, Rho (Ras homology) subfamily of Ras-like small GTPases

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 13/60 (21%)

Query: 3   IMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
           I+L+G K DL        E        V  E+G+  A+  G V ++E SA     V E F
Sbjct: 105 IILVGTKLDLRNDKSTLEELSKKKQEPVTYEQGQALAKRIGAVKYLECSALTQEGVREVF 164

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms. Length = 174

>gnl|CDD|206717 cd04150, Arf1_5_like, ADP-ribosylation factor-1 (Arf1) and ADP-ribosylation factor-5 (Arf5)

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 15/83 (18%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
           T++ K I   +WD  GQ+  R + R Y++   G + V D   RE        + +AR+  
Sbjct: 38  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER-------IGEAREEL 90

Query: 168 NS--------NMVIMLIGNKSDL 182
                     + V+++  NK DL
Sbjct: 91  QRMLNEDELRDAVLLVFANKQDL 113

The Arf1-Arf5-like subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents and other lower eukaryotes, lack Arf2. Human Arf3 shares 96% sequence identity with Arf1 and is believed to generally function interchangeably with Arf1. Human Arf4 in the activated (GTP-bound) state has been shown to interact with the cytoplasmic domain of epidermal growth factor receptor (EGFR) and mediate the EGF-dependent activation of phospholipase D2 (PLD2), leading to activation of the activator protein 1 (AP-1) transcription factor. Arf4 has also been shown to recognize the C-terminal sorting signal of rhodopsin and regulate its incorporation into specialized post-Golgi rhodopsin transport carriers (RTCs). There is some evidence that Arf5 functions at the early-Golgi and the trans-Golgi to affect Golgi-associated alpha-adaptin homology Arf-binding proteins (GGAs). Length = 159

>gnl|CDD|200938 pfam00025, Arf, ADP-ribosylation factor family

 Score = 41.4 bits (98), Expect = 1e-04
 Identities = 26/118 (22%), Positives = 45/118 (38%), Gaps = 16/118 (13%)

Query: 112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFN----HLTTWLEDARQHS 167
           K +K  +WD  GQE+ R + R+Y+      + V D   R+        L   L +     
Sbjct: 56  KNVKFTVWDVGGQESLRPLWRNYFPNTDAVIFVVDSADRDRIEEAKEELHALLNEEE--- 112

Query: 168 NSNMVIMLIGNKSDL------DARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
            ++  ++++ NK DL         RE      E+  R    +    SA     ++E  
Sbjct: 113 LADAPLLILANKQDLPGAMSEAEIRE-LLGLHELKDR-PWEIQG-CSAVTGEGLDEGL 167

Pfam combines a number of different Prosite families together. Length = 174

>gnl|CDD|206680 cd01893, Miro1, Mitochondrial Rho family 1 (Miro1), N-terminal

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 35/118 (29%), Positives = 48/118 (40%), Gaps = 18/118 (15%)

Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT-WLEDARQHSNSNM 171
           ++   I DT+ +   R+   +  R A    LVY + R  T   + T WL   R+     +
Sbjct: 48  RVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPSTLERIRTKWLPLIRRLGV-KV 106

Query: 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFM----------ETSAKLATNVEEAF 219
            I+L+GNKSDL         E E+      L  M          E SAK   NV E F
Sbjct: 107 PIILVGNKSDLRDGSSQAGLEEEM------LPIMNEFREIETCVECSAKTLINVSEVF 158

Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature. Length = 168

>gnl|CDD|206704 cd04132, Rho4_like, Ras homology family 4 (Rho4) of small guanosine triphosphatases (GTPases)-like

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 13/60 (21%)

Query: 3   IMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
           I+L+G K+DL   +             V  E+GE  A+  G V ++E SAKL  NV+E F
Sbjct: 111 IVLVGLKTDLRKDKNSVSKLRAQGLEPVTPEQGESVAKSIGAVAYIECSAKLMENVDEVF 170

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 197

>gnl|CDD|133275 cd01873, RhoBTB, RhoBTB protein is an atypical member of the Rho family of small GTPases

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 35/131 (26%), Positives = 53/131 (40%), Gaps = 23/131 (17%)

Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT-WLEDARQHS 167
           +DG  + L++WDT G        R  Y  +   LL + I    +  ++ T W  + R   
Sbjct: 61  VDGVSVSLRLWDTFG--DHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFC 118

Query: 168 NSNMVIMLIGNKSDL---------DARREVKK----------EEGEVFAREHGLVFMETS 208
               VI L+G K DL          ARR + +          E G   A+E G+ + ETS
Sbjct: 119 PRVPVI-LVGCKLDLRYADLDEVNRARRPLARPIKNADILPPETGRAVAKELGIPYYETS 177

Query: 209 AKLATNVEEAF 219
                 V++ F
Sbjct: 178 VVTQFGVKDVF 188

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature. Length = 195

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 24/84 (28%), Positives = 38/84 (45%), Gaps = 8/84 (9%)

Query: 3   IMLIGNKSDL----DARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
           I L G KSDL     + R+V   + + FA E      ETS+K   NV+E F    +++ E
Sbjct: 108 IYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTGQNVDELF----QKVAE 163

Query: 59  KIQEGVFDITNEANGIKIGPQHSP 82
                  +  N   G+ +G + + 
Sbjct: 164 DFVSRANNQMNTEKGVDLGQKKNS 187

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|206718 cd04151, Arl1, ADP ribosylation factor 1 (Arf1)

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 30/119 (25%), Positives = 52/119 (43%), Gaps = 12/119 (10%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF----NHLTTWL-ED 162
           T+  K +K Q+WD  GQ + R   R YY      + V D T R+      + L   L E+
Sbjct: 37  TVTYKNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGISKSELHAMLEEE 96

Query: 163 ARQHSNSNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
             +    + V+++  NK D+    +  EV ++ G    ++      +TSA     ++E 
Sbjct: 97  ELK----DAVLLVFANKQDMPGALSEAEVAEKLGLSELKDRTWQIFKTSATKGEGLDEG 151

Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability. Length = 158

>gnl|CDD|133356 cd04156, ARLTS1, Arf-like tumor suppressor gene 1 (ARLTS1 or Arl11)

 Score = 38.9 bits (91), Expect = 5e-04
 Identities = 20/84 (23%), Positives = 39/84 (46%), Gaps = 2/84 (2%)

Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V F   M+ ++   + L +WD  GQE  R++ + Y     G + V D +     +     
Sbjct: 31  VGFNVEMLQLEKH-LSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEARLDESQKE 89

Query: 160 LEDARQHSN-SNMVIMLIGNKSDL 182
           L+   ++ +   + ++L+ NK DL
Sbjct: 90  LKHILKNEHIKGVPVVLLANKQDL 113

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in high-risk familial breast cancer. Length = 160

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)

Query: 5   LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT---NVEEAFI 50
           L+GNK DL  + +V  +  + FA  H +   ETSAK  +   +VE  F+
Sbjct: 114 LVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDHVEAIFM 162

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 38.6 bits (90), Expect = 0.001
 Identities = 19/54 (35%), Positives = 31/54 (57%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           ++L+GNK+DL+  R+V  E+   FA+E+ +  +  SAK    V   F   A E+
Sbjct: 112 MVLVGNKTDLEHNRQVTAEKHARFAQENDMESIFVSAKTGDRVFLCFQRIAAEL 165

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206707 cd04135, Tc10, Rho GTPase TC10 (Tc10)

 Score = 38.5 bits (89), Expect = 0.001
 Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 19/135 (14%)

Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
           A  +T+ GKQ  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +
Sbjct: 38  AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE 97

Query: 163 ARQHSNSNMVIMLIGNKSDLD------AR------REVKKEEGEVFAREHGL-VFMETSA 209
            ++++  N+  +LIG + DL       AR      + +  E+G+  A+E G   ++E SA
Sbjct: 98  LKEYA-PNVPYLLIGTQIDLRDDPKTLARLNDMKEKPITVEQGQKLAKEIGACCYVECSA 156

Query: 210 ----KLATNVEEAFI 220
                L T  +EA I
Sbjct: 157 LTQKGLKTVFDEAII 171

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interactions with CFTR-associated ligand (CAL). The GTP-bound form of TC10 directs the trafficking of CFTR from the juxtanuclear region to the secretory pathway toward the plasma membrane, away from CAL-mediated DFTR degradation in the lysosome. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 174

>gnl|CDD|206643 cd00877, Ran, Ras-related nuclear proteins (Ran)/TC4 family of small GTPases

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 2/52 (3%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK 54
           I+L GNK  +D +    K +   F R+  L + E SAK   N E+ F+  A+
Sbjct: 107 IVLCGNK--VDIKDRKVKPKQITFHRKKNLQYYEISAKSNYNFEKPFLWLAR 156

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is bound to chromatin and confined to the nucleus. Ran itself is mobile and is actively imported into the nucleus by a mechanism involving NTF-2. Together with the compartmentalization of its regulators, this is thought to produce a relatively high concentration of RanGTP in the nucleus. Length = 166

>gnl|CDD|133342 cd04142, RRP22, Ras-related protein on chromosome 22 (RRP22) family

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 25/92 (27%), Positives = 40/92 (43%), Gaps = 13/92 (14%)

Query: 107 ITIDGKQIKLQIWD---------TAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT 157
           + + G+   L I D         TAGQE      R   R +   +LVYDI   ++F+++ 
Sbjct: 42  VVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGL-RNSRAFILVYDICSPDSFHYVK 100

Query: 158 TWLE---DARQHSNSNMVIMLIGNKSDLDARR 186
              +   + R   N    I+++GNK D    R
Sbjct: 101 LLRQQILETRPAGNKEPPIVVVGNKRDQQRHR 132

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated. Length = 198

>gnl|CDD|165788 PLN00223, PLN00223, ADP-ribosylation factor; Provisional

 Score = 37.6 bits (87), Expect = 0.002
 Identities = 20/76 (26%), Positives = 33/76 (43%), Gaps = 1/76 (1%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
           T++ K I   +WD  GQ+  R + R Y++   G + V D   R+        L       
Sbjct: 55  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNED 114

Query: 168 N-SNMVIMLIGNKSDL 182
              + V+++  NK DL
Sbjct: 115 ELRDAVLLVFANKQDL 130

Length = 181

>gnl|CDD|218203 pfam04670, Gtr1_RagA, Gtr1/RagA G protein conserved region

 Score = 37.6 bits (88), Expect = 0.003
 Identities = 37/128 (28%), Positives = 55/128 (42%), Gaps = 26/128 (20%)

Query: 107 ITIDGKQ--------IKLQIWDTAGQEAFRSITRSYYRGA----AGALL-VYDITRRE-- 151
            TID +Q        + L +WD  GQ+ F     +  +       G L+ V+D+  RE  
Sbjct: 33  ATIDVEQSHVRFLGNLTLNLWDCPGQDDFMENYLTRQKEHIFSNVGVLIYVFDVESREYE 92

Query: 152 -TFNHLTTWLEDARQHSNSNMVIMLIGNKSDL---DARREV---KKEEGEVFAREHG--- 201
                L   +E   Q+S +  V +LI +K DL   D R+E+   +KEE      + G   
Sbjct: 93  EDLATLVKIIEALYQYSPNAKVFVLI-HKMDLLSEDERKEIFEDRKEEIIEEIEDFGIED 151

Query: 202 LVFMETSA 209
           L F  TS 
Sbjct: 152 LTFFLTSI 159

GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B. Length = 230

>gnl|CDD|206723 cd04158, ARD1, (ADP-ribosylation factor domain protein 1 (ARD1)

 Score = 37.3 bits (86), Expect = 0.003
 Identities = 21/89 (23%), Positives = 38/89 (42%), Gaps = 1/89 (1%)

Query: 103 GARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED 162
           G  + T++ K +K  IWD  G+   R + + YY      + V D + R+  +   + L  
Sbjct: 32  GFNVETVEYKNLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVIDSSHRDRVSEAHSELAK 91

Query: 163 ARQHSNSNMVIMLI-GNKSDLDARREVKK 190
                     ++LI  NK D+     V++
Sbjct: 92  LLTEKELRDALLLIFANKQDVAGALSVEE 120

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membrane. Two Tyr-based motifs in the Arf domain are responsible for Golgi localization, while the GAP domain controls lysosomal localization. Length = 169

>gnl|CDD|225138 COG2229, COG2229, Predicted GTPase [General function prediction only]

 Score = 37.1 bits (86), Expect = 0.003
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 8/93 (8%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
            ++FG+  I +D     + ++ T GQE F+ +     RGA GA+++ D +R  TF     
Sbjct: 56  AMDFGS--IELDEDT-GVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITF----H 108

Query: 159 WLEDARQHSNSNMVIMLIG-NKSDLDARREVKK 190
             E     ++ N + +++  NK DL      +K
Sbjct: 109 AEEIIDFLTSRNPIPVVVAINKQDLFDALPPEK 141

Length = 187

>gnl|CDD|133321 cd04121, Rab40, Rab GTPase family 40 (Rab40) contains Rab40a, Rab40b and Rab40c

 Score = 36.8 bits (85), Expect = 0.004
 Identities = 16/51 (31%), Positives = 30/51 (58%)

Query: 4   MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK 54
           +L+GN+  L  +R+V  E+ + +A  +G+ F E S     N+ E+F + A+
Sbjct: 114 ILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITESFTELAR 164

The Rab40 subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 189

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 36.6 bits (85), Expect = 0.004
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)

Query: 2   VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
            I+L+GNK DL   + +K     +FA+ +G   +  SA+   N++ AF
Sbjct: 111 PIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNIDSAF 157

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
2a5j_A	191	Crystal Structure Of Human Rab2b Length = 191		1e-68
1z0a_A	174	Gdp-Bound Rab2a Gtpase Length = 174		2e-68
4drz_A	196	Crystal Structure Of Human Rab14 Length = 196		3e-48
1z0f_A	179	Gdp-Bound Rab14 Gtpase Length = 179		8e-48
2bmd_A	186	High Resolution Structure Of Gdp-Bound Human Rab4a		4e-45
2o52_A	200	Crystal Structure Of Human Rab4b In Complex With Gd		4e-44
1yu9_A	175	Gppnhp-Bound Rab4a Length = 175		7e-43
1z0k_A	172	Structure Of Gtp-Bound Rab4q67l Gtpase In Complex W		5e-42
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		3e-37
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		7e-37
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		8e-37
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		6e-36
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		6e-36
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		4e-35
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		4e-35
3qbt_A	174	Crystal Structure Of Ocrl1 540-678 In Complex With		7e-35
2fu5_C	183	Structure Of Rab8 In Complex With Mss4 Length = 183		8e-35
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-34
3tkl_A	196	Crystal Structure Of The Gtp-Bound Rab1a In Complex		8e-34
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		2e-33
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		2e-33
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		2e-33
3sfv_A	181	Crystal Structure Of The Gdp-Bound Rab1a S25n Mutan		3e-33
4fmb_B	171	Vira-Rab1 Complex Structure Length = 171		3e-33
4fmd_F	164	Espg-Rab1 Complex Structure At 3.05 A Length = 164		3e-33
4fmc_B	171	Espg-Rab1 Complex Length = 171		3e-33
2fol_A	191	Crystal Structure Of Human Rab1a In Complex With Gd		4e-33
2rhd_A	175	Crystal Structure Of Cryptosporidium Parvum Small G		5e-33
3l0i_B	199	Complex Structure Of Sidm/drra With The Wild Type R		8e-33
4i1o_A	181	Crystal Structure Of The Legionella Pneumophila Gap		9e-33
3jza_A	175	Crystal Structure Of Human Rab1b In Complex With Th		1e-32
1g17_A	170	Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)		4e-32
2wwx_A	175	Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Ra		5e-32
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		7e-32
2bcg_Y	206	Structure Of Doubly Prenylated Ypt1:gdi Complex Len		9e-32
1ukv_Y	206	Structure Of Rabgdp-Dissociation Inhibitor In Compl		1e-31
1g16_A	170	Crystal Structure Of Sec4-Gdp Length = 170		1e-31
2eqb_A	174	Crystal Structure Of The Rab Gtpase Sec4p, The Sec2		1e-31
2g6b_A	180	Crystal Structure Of Human Rab26 In Complex With A		1e-31
3cph_A	213	Crystal Structure Of Sec4 In Complex With Rab-Gdi L		1e-31
1yzn_A	185	Gppnhp-Bound Ypt1p Gtpase Length = 185		3e-31
2ocy_C	170	Complex Of The Guanine Exchange Factor Sec2p And Th		3e-31
2ew1_A	201	Crystal Structure Of Rab30 In Complex With A Gtp An		2e-30
3rwm_B	185	Crystal Structure Of Ypt32 In Complex With Gppnhp L		8e-30
1x3s_A	195	Crystal Structure Of Human Rab18 In Complex With Gp		4e-29
2efc_B	181	Ara7-GdpATVPS9A Length = 181		4e-29
2il1_A	192	Crystal Structure Of A Predicted Human Gtpase In Co		5e-29
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		2e-28
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		4e-28
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		4e-28
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		6e-28
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		3e-27
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		3e-27
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		4e-27
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		4e-27
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		4e-27
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		5e-27
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		5e-27
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		5e-27
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		5e-27
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		5e-27
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		7e-27
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		9e-27
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		4e-26
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		4e-26
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		4e-26
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		5e-26
3tw8_B	181	Gef Domain Of Dennd 1b In Complex With Rab Gtpase R		1e-25
3dz8_A	191	Crystal Structure Of Human Rab3b Gtpase Bound With		2e-25
1yvd_A	169	Gppnhp-Bound Rab22 Gtpase Length = 169		2e-25
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		2e-25
3rab_A	169	Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169		2e-25
2gf9_A	189	Crystal Structure Of Human Rab3d In Complex With Gd		4e-25
1z0j_A	170	Structure Of Gtp-Bound Rab22q64l Gtpase In Complex		1e-24
1zbd_A	203	Structural Basis Of Rab Effector Specificity: Cryst		2e-24
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		5e-24
2fg5_A	192	Crystal Structure Of Human Rab31 In Complex With A		6e-24
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		1e-23
4fmc_F	117	Espg-Rab1 Complex Length = 117		4e-23
1yzt_A	184	Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Leng		2e-22
1yzu_A	170	Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Leng		2e-22
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		2e-22
1z06_A	189	Gppnhp-Bound Rab33 Gtpase Length = 189		7e-22
3bc1_A	195	Crystal Structure Of The Complex Rab27a-slp2a Lengt		9e-22
2g77_B	198	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		3e-21
2f7s_A	217	The Crystal Structure Of Human Rab27b Bound To Gdp		2e-20
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		7e-20
2iez_A	220	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		2e-19
1vg0_B	207	The Crystal Structures Of The Rep-1 Protein In Comp		3e-19
2if0_A	200	Crystal Structure Of Mouse Rab27b Bound To Gdp In M		3e-19
1vg1_A	185	Gdp-bound Rab7 Length = 185		4e-19
3law_A	207	Structure Of Gtp-Bound L129f Mutant Rab7 Length = 2		6e-19
1wms_A	177	High Resolution Crystal Structure Of Human Rab9 Gtp		7e-19
1s8f_A	177	Crystal Structure Of Rab9 Complexed To Gdp Reveals		8e-19
2zet_A	203	Crystal Structure Of The Small Gtpase Rab27b Comple		8e-19
2iey_A	195	Crystal Structure Of Mouse Rab27b Bound To Gdp In H		2e-18
1yzl_A	179	Gppnhp-Bound Rab9 Gtpase Length = 179		2e-18
2fn4_A	181	The Crystal Structure Of Human Ras-Related Protein,		2e-18
2ocb_A	180	Crystal Structure Of Human Rab9b In Complex With A		2e-18
1t91_A	207	Crystal Structure Of Human Small Gtpase Rab7(Gtp) L		2e-18
1z22_A	168	Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Spac		6e-18
2a78_A	187	Crystal Structure Of The C3bot-Rala Complex Reveals		8e-18
1uad_A	175	Crystal Structure Of The Rala-gppnhp-sec5 Ral-bindi		8e-18
2bov_A	206	Molecular Recognition Of An Adp-Ribosylating Clostr		9e-18
1u8y_A	168	Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal		1e-17
2kwi_A	178	Ralb-Rlip76 (Ralbp1) Complex Length = 178		1e-17
2ke5_A	174	Solution Structure And Dynamics Of The Small Gtpase		1e-17
2ery_A	172	The Crystal Structure Of The Ras Related Protein Rr		2e-17
1ky2_A	182	Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182		4e-17
3brw_D	167	Structure Of The Rap-Rapgap Complex Length = 167		5e-17
4dxa_A	169	Co-Crystal Structure Of Rap1 In Complex With Krit1		5e-17
1zc3_A	175	Crystal Structure Of The Ral-Binding Domain Of Exo8		7e-17
1c1y_A	167	Crystal Structure Of Rap.Gmppnp In Complex With The		1e-16
1gua_A	167	Human Rap1a, Residues 1-167, Double Mutant (E30d,K3		1e-16
2cl0_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		8e-16
2cld_X	166	Crystal Structure Analysis Of A Fluorescent Form Of		9e-16
4q21_A	189	Molecular Switch For Signal Transduction: Structura		2e-15
1clu_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-15
1agp_A	166	Three-Dimensional Structures And Properties Of A Tr		2e-15
3kkm_A	172	Crystal Structure Of H-Ras T35s In Complex With Gpp		2e-15
4efm_A	171	Crystal Structure Of H-Ras G12v In Complex With Gpp		2e-15
4efl_A	171	Crystal Structure Of H-Ras Wt In Complex With Gppnh		2e-15
2c5l_A	173	Structure Of Plc Epsilon Ras Association Domain Wit		2e-15
421p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-15
1jah_A	166	H-Ras P21 Protein Mutant G12p, Complexed With Guano		2e-15
1iaq_A	166	C-H-Ras P21 Protein Mutant With Thr 35 Replaced By		2e-15
3k9n_A	166	Allosteric Modulation Of H-Ras Gtpase Length = 166		2e-15
1wq1_R	166	Ras-Rasgap Complex Length = 166		2e-15
3lo5_A	166	Crystal Structure Of The Dominant Negative S17n Mut		2e-15
1rvd_A	166	H-Ras Complexed With Diaminobenzophenone-Beta,Gamma		2e-15
3ddc_A	166	Crystal Structure Of Nore1a In Complex With Ras Len		2e-15
1lfd_B	167	Crystal Structure Of The Active Ras Protein Complex		2e-15
221p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-15
3v4f_A	166	H-Ras Peg 400CACL2, ORDERED OFF Length = 166		2e-15
6q21_A	171	Molecular Switch For Signal Transduction: Structura		3e-15
2q21_A	171	Crystal Structures At 2.2 Angstroms Resolution Of T		3e-15
4epr_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-15
4epx_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-15
4ept_A	170	Discovery Of Small Molecules That Bind To K-Ras And		3e-15
2hxs_A	178	Crystal Structure Of Rab28a Gtpase In The Inactive		3e-15
3i3s_R	166	Crystal Structure Of H-Ras With Thr50 Replaced By I		4e-15
2quz_A	166	Crystal Structure Of The Activating H-Rask117r Muta		5e-15
4dso_A	189	Small-Molecule Ligands Bind To A Distinct Pocket In		6e-15
1lf0_A	166	Crystal Structure Of Rasa59g In The Gtp-Bound Form		7e-15
2x1v_A	166	Crystal Structure Of The Activating H-Ras I163f Mut		7e-15
521p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		7e-15
2rgb_A	166	Crystal Structure Of H-Rasq61k-Gppnhp Length = 166		7e-15
3con_A	190	Crystal Structure Of The Human Nras Gtpase Bound Wi		8e-15
621p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		1e-14
1nvv_Q	166	Structural Evidence For Feedback Activation By Rasg		1e-14
4efn_A	171	Crystal Structure Of H-Ras Q61l In Complex With Gpp		2e-14
1xcm_A	167	Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mu		2e-14
1xj0_A	166	Crystal Structure Of The Gdp-Bound Form Of The Rasg		2e-14
721p_A	166	Three-Dimensional Structures Of H-Ras P21 Mutants:		2e-14
2rgc_A	166	Crystal Structure Of H-Rasq61v-Gppnhp Length = 166		2e-14
1zvq_A	166	Structure Of The Q61g Mutant Of Ras In The Gdp-Boun		2e-14
2rga_A	166	Crystal Structure Of H-Rasq61i-Gppnhp Length = 166		2e-14
2bku_A	177	Kap95p:rangtp Complex Length = 177		3e-14
1zw6_A	166	Crystal Structure Of The Gtp-Bound Form Of Rasq61g		3e-14
1rrp_A	204	Structure Of The Ran-Gppnhp-Ranbd1 Complex Length =		3e-14
1wa5_A	176	Crystal Structure Of The Exportin Cse1p Complexed W		4e-14
1byu_A	216	Canine Gdp-Ran Length = 216		4e-14
3gft_A	187	Human K-Ras In Complex With A Gtp Analogue Length =		4e-14
1a2k_C	216	Gdpran-Ntf2 Complex Length = 216		4e-14
3ea5_A	216	Kap95p Binding Induces The Switch Loops Of Rangdp T		4e-14
1qg2_A	216	Canine Gdp-Ran R76e Mutant Length = 216		4e-14
3gj0_A	221	Crystal Structure Of Human Rangdp Length = 221		5e-14
3gj4_A	221	Crystal Structure Of Human Rangdp-Nup153znf3 Comple		5e-14
2erx_A	172	Crystal Structure Of Diras2 In Complex With Gdp And		6e-14
1qbk_C	216	Structure Of The Karyopherin Beta2-ran Gppnhp Nucle		7e-14
1qg4_A	216	Canine Gdp-Ran F72y Mutant Length = 216		9e-14
3nby_C	176	Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclea		2e-13
3nc1_C	182	Crystal Structure Of The Crm1-Rangtp Complex Length		3e-13
3ran_A	216	Canine Gdp-Ran Q69l Mutant Length = 216		3e-13
2atv_A	196	The Crystal Structure Of Human Rerg In The Gdp Boun		5e-13
3oes_A	201	Crystal Structure Of The Small Gtpase Rhebl1 Length		7e-13
3icq_B	171	Karyopherin Nuclear State Length = 171		1e-12
2x19_A	172	Crystal Structure Of Importin13 - Rangtp Complex Le		1e-12
3m1i_A	219	Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex		1e-12
4djt_A	218	Crystal Structure Of A Nuclear Gtp-Binding Protein		3e-12
3rap_R	167	The Small G Protein Rap2 In A Non Catalytic Complex		4e-12
1tx4_B	177	RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177		6e-12
1xcg_B	178	Crystal Structure Of Human Rhoa In Complex With DhP		6e-12
3msx_A	180	Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With		6e-12
1cxz_A	182	Crystal Structure Of Human Rhoa Complexed With The		7e-12
3kz1_E	182	Crystal Structure Of The Complex Of Pdz-Rhogef DhPH		7e-12
3lw8_A	185	Shigella Ipgb2 In Complex With Human Rhoa, Gdp And		7e-12
1s1c_A	183	Crystal Structure Of The Complex Between The Human		7e-12
3tvd_A	193	Crystal Structure Of Mouse Rhoa-Gtp Complex Length		7e-12
1ow3_B	193	Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With		8e-12
1x86_B	196	Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-A		8e-12
1cc0_A	190	Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Le		8e-12
1lb1_B	192	Crystal Structure Of The Dbl And Pleckstrin Homolog		9e-12
4f38_A	195	Crystal Structure Of Geranylgeranylated Rhoa In Com		9e-12
3pir_A	183	Crystal Structure Of M-Rasd41e In Complex With Gppn		9e-12
1x1r_A	178	Crystal Structure Of M-Ras In Complex With Gdp Leng		9e-12
3kkp_A	183	Crystal Structure Of M-Ras P40d In Complex With Gpp		1e-11
3kko_A	183	Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX		1e-11
1kmq_A	184	Crystal Structure Of A Constitutively Activated Rho		5e-11
1z2c_A	193	Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With		7e-11
2gcn_A	201	Crystal Structure Of The Human Rhoc-Gdp Complex Len		7e-11
2gco_A	201	Crystal Structure Of The Human Rhoc-gppnhp Complex		7e-11
2gf0_A	199	The Crystal Structure Of The Human Diras1 Gtpase In		8e-11
1xtq_A	177	Structure Of Small Gtpase Human Rheb In Complex Wit		8e-11
2l0x_A	169	Solution Structure Of The 21 Kda Gtpase Rheb Bound		9e-11
2j1l_A	214	Crystal Structure Of Human Rho-Related Gtp-Binding		9e-11
3sea_A	167	Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bo		9e-11
3t5g_A	181	Structure Of Fully Modified Farnesylated Rheb In Co		1e-10
2j0v_A	212	The Crystal Structure Of Arabidopsis Thaliana Rac7-		4e-10
1dpf_A	180	Crystal Structure Of A Mg-Free Form Of Rhoa Complex		4e-10
2nzj_A	175	The Crystal Structure Of Rem1 In Complex With Gdp L		7e-10
3q72_A	166	Crystal Structure Of Rad G-Domain-Gtp Analog Comple		7e-10
2dpx_A	174	Crystal Structure Of Human Rad Gtpase Length = 174		7e-10
2gjs_A	176	The Crystal Structure Of Human Rrad In Complex With		8e-10
2wbl_C	180	Three-Dimensional Structure Of A Binary Rop-Prone C		2e-09
2fv8_A	207	The Crystal Structure Of Rhob In The Gdp-Bound Stat		2e-09
2q3h_A	201	The Crystal Structure Of Rhoua In The Gdp-bound Sta		4e-09
2yc2_C	208	Intraflagellar Transport Complex 25-27 From Chlamyd		1e-08
2nty_C	180	Rop4-Gdp-Prone8 Length = 180		1e-08
1mh1_A	186	Small G-Protein Length = 186		3e-08
1g4u_R	184	Crystal Structure Of The Salmonella Tyrosine Phosph		3e-08
2h7v_A	188	Co-crystal Structure Of Ypka-rac1 Length = 188		3e-08
2g3y_A	211	Crystal Structure Of The Human Small Gtpase Gem Len		3e-08
1hh4_A	192	Rac1-Rhogdi Complex Involved In Nadph Oxidase Activ		3e-08
2ht6_A	174	Crystal Structure Of Human Gem G-Domain Bound To Gd		3e-08
3ref_B	194	Crystal Structure Of Ehrho1 Bound To Gdp And Magnes		4e-08
4dvg_A	188	Crystal Structure Of E. Histolytica Formin1 Bound T		5e-08
2cjw_B	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		5e-08
2cjw_A	192	Crystal Structure Of The Small Gtpase Gem (Gemdndca		7e-08
2vrw_A	184	Critical Structural Role For The Ph And C1 Domains		8e-08
2wkr_A	332	Structure Of A Photoactivatable Rac1 Containing The		9e-08
2wkp_A	332	Structure Of A Photoactivatable Rac1 Containing Lov		9e-08
2wkq_A	332	Structure Of A Photoactivatable Rac1 Containing The		9e-08
1he1_C	176	Crystal Structure Of The Complex Between The Gap Do		9e-08
3sua_A	184	Crystal Structure Of The Intracellular Domain Of Pl		1e-07
1i4d_D	192	Crystal Structure Analysis Of Rac1-Gdp Complexed Wi		1e-07
2fju_A	178	Activated Rac1 Bound To Its Effector Phospholipase		1e-07
1foe_B	177	Crystal Structure Of Rac1 In Complex With The Guani		1e-07
2yin_C	196	Structure Of The Complex Between Dock2 And Rac1. Le		1e-07
4gzm_A	204	Crystal Structure Of Rac1 F28l Mutant Length = 204		1e-07
3b13_B	184	Crystal Structure Of The Dhr-2 Domain Of Dock2 In C		1e-07
3th5_A	204	Crystal Structure Of Wild-Type Rac1 Length = 204		1e-07
3sbd_A	187	Crystal Structure Of Rac1 P29s Mutant Length = 187		1e-07
3cbq_A	195	Crystal Structure Of The Human Rem2 Gtpase With Bou		3e-07
3a58_B	188	Crystal Structure Of Sec3p - Rho1p Complex From Sac		3e-07
2c2h_A	192	Crystal Structure Of The Human Rac3 In Complex With		4e-07
2ic5_A	180	Crystal Structure Of Human Rac3 Grown In The Presen		4e-07
2g0n_A	179	The Crystal Structure Of The Human Rac3 In Complex		4e-07
3c5c_A	187	Crystal Structure Of Human Ras-Like, Family 12 Prot		7e-07
3bwd_D	182	Crystal Structure Of The Plant Rho Protein Rop5 Len		7e-07
1e96_A	192	Structure Of The RacP67PHOX COMPLEX Length = 192		7e-07
1i4t_D	192	Crystal Structure Analysis Of Rac1-Gmppnp In Comple		8e-07
3q85_A	169	Crystal Structure Of Rem2 G-Domain -Gtp Analog Comp		8e-07
3ryt_C	180	The Plexin A1 Intracellular Region In Complex With		8e-07
4aii_A	180	Crystal Structure Of The Rat Rem2 Gtpase - G Domain		9e-07
4gzl_A	204	Crystal Structure Of Rac1 Q61l Mutant Length = 204		9e-07
1m7b_A	184	Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATI		1e-06
2v55_B	200	Mechanism Of Multi-site Phosphorylation From A Rock		1e-06
1gwn_A	205	The Crystal Structure Of The Core Domain Of RhoeRND		1e-06
2rex_B	197	Crystal Structure Of The Effector Domain Of Plxnb1		4e-06
2cls_A	198	The Crystal Structure Of The Human Rnd1 Gtpase In T		4e-06
3q3j_B	214	Crystal Structure Of Plexin A2 Rbd In Complex With		5e-06
1ryf_A	203	Alternative Splicing Of Rac1 Generates Rac1b, A Sel		5e-06
2atx_A	194	Crystal Structure Of The Tc10 Gppnhp Complex Length		7e-06
1ds6_A	192	Crystal Structure Of A Rac-Rhogdi Complex Length =		8e-06
2w2t_A	185	Rac2 (G12v) In Complex With Gdp Length = 185		9e-06
2w2v_A	184	Rac2 (G12v) In Complex With Gtpgs Length = 184		9e-06
3pcr_B	162	Structure Of Espg-Arf6 Complex Length = 162		1e-05
2a5d_A	175	Structural Basis For The Activation Of Cholera Toxi		2e-05
1e0s_A	174	Small G Protein Arf6-Gdp Length = 174		2e-05
4fme_C	160	Espg-Rab1-Arf6 Complex Length = 160		2e-05
3n5c_A	162	Crystal Structure Of Arf6delta13 Complexed With Gdp		2e-05
3lvr_E	497	The Crystal Structure Of Asap3 In Complex With Arf6		3e-05
2a5g_A	175	Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length		1e-04
2w83_A	165	Crystal Structure Of The Arf6 Gtpase In Complex Wit		1e-04
3vhx_A	172	The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesi		1e-04
3lrp_A	181	Crystal Structure Of Plasmodium Falciparum Adp-Ribo		3e-04
1zd9_A	188	Structure Of Human Adp-Ribosylation Factor-Like 10b		6e-04
1moz_A	183	Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharo		6e-04
3doe_A	192	Complex Of Arl2 And Bart, Crystal Form 1 Length = 1		6e-04
2al7_A	186	Structure Of Human Adp-Ribosylation Factor-Like 10c		6e-04
1mr3_F	181	Saccharomyces Cerevisiae Adp-Ribosylation Factor 2		7e-04
2k5u_A	181	Solution Structure Of Myirstoylated Yeast Arf1 Prot		7e-04
3tjz_A	164	Crystal Structure Of Arf1 Bound To The GammaZETA-Co		7e-04
1ksg_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 1 Lengt		8e-04
1ksh_A	186	Complex Of Arl2 And Pde Delta, Crystal Form 2 (Nati		8e-04

>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b Length = 191

Iteration: 1
 Score =  255 bits (652), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 119/136 (87%), Positives = 131/136 (96%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEFGARM+ IDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRRETFNHLT+W
Sbjct: 56  VEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSW 115
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           LEDARQHS+SNMVIMLIGNKSDL++RR+VK+EEGE FAREHGL+FMETSAK A NVEEAF
Sbjct: 116 LEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAF 175
Query: 220 IDTAKEIYEKIQEGVF 235
           I+TAKEIY KIQ+G+F
Sbjct: 176 INTAKEIYRKIQQGLF 191

>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase Length = 174

Iteration: 1
 Score =  255 bits (651), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 121/130 (93%), Positives = 128/130 (98%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEFGARMITIDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRR+TFNHLTTW
Sbjct: 45  VEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTW 104
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           LEDARQHSNSNMVIMLIGNKSDL++RREVKKEEGE FAREHGL+FMETSAK A+NVEEAF
Sbjct: 105 LEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAF 164
Query: 220 IDTAKEIYEK 229
           I+TAKEIYEK
Sbjct: 165 INTAKEIYEK 174

>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14 Length = 196

Iteration: 1
 Score =  187 bits (476), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 85/132 (64%), Positives = 110/132 (83%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEFG R+I + G++IKLQIWDTAGQ  FR++TRSYYRGAAGAL+VYDITRR T+NHL++W
Sbjct: 65  VEFGTRIIEVSGQKIKLQIWDTAGQGRFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 124
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L DAR  +N N VI+LIGNK+DL+A+R+V  EE + FA E+GL+F+E SAK   NVE+AF
Sbjct: 125 LTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 184
Query: 220 IDTAKEIYEKIQ 231
           ++ AK+IY+ IQ
Sbjct: 185 LEAAKKIYQNIQ 196

>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase Length = 179

Iteration: 1
 Score =  186 bits (473), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 84/129 (65%), Positives = 109/129 (84%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEFG R+I + G++IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL++W
Sbjct: 50  VEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSW 109
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L DAR  +N N VI+LIGNK+DL+A+R+V  EE + FA E+GL+F+E SAK   NVE+AF
Sbjct: 110 LTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAF 169
Query: 220 IDTAKEIYE 228
           ++ AK+IY+
Sbjct: 170 LEAAKKIYQ 178

>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a Length = 186

Iteration: 1
 Score =  177 bits (450), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/137 (62%), Positives = 105/137 (76%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEFG+++I + GK +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N LT W
Sbjct: 45  VEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW 104
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L DAR  ++ N+VI+L GNK DLDA REV   E   FA+E+ L+F+ETSA    NVEEAF
Sbjct: 105 LTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAF 164
Query: 220 IDTAKEIYEKIQEGVFD 236
           +  A++I  KI+ G  D
Sbjct: 165 VQCARKILNKIESGELD 181

>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp Length = 200

Iteration: 1
 Score =  174 bits (441), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 83/137 (60%), Positives = 101/137 (73%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEFG+R++ + GK +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L  W
Sbjct: 60  VEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAW 119
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L DAR  ++ N+V++L GNK DLD  REV   E   FA+E+ L+F+ETSA    NVEEAF
Sbjct: 120 LTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAF 179
Query: 220 IDTAKEIYEKIQEGVFD 236
           +  A+ I  KI  G  D
Sbjct: 180 LKCARTILNKIDSGELD 196

>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a Length = 175

Iteration: 1
 Score =  170 bits (430), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 82/130 (63%), Positives = 101/130 (77%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEFG+++I + GK +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N LT W
Sbjct: 46  VEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW 105
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L DAR  ++ N+VI+L GNK DLDA REV   E   FA+E+ L+F+ETSA    +VEEAF
Sbjct: 106 LTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAF 165
Query: 220 IDTAKEIYEK 229
           +  A++I  K
Sbjct: 166 VQCARKILNK 175

>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The Central Rab Binding Domain Of Rabenosyn-5 Length = 172

Iteration: 1
 Score =  167 bits (423), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 81/130 (62%), Positives = 100/130 (76%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEFG+++I + GK +KLQIWDTAG E FRS+TRSYYRGAAGALLVYDIT RET+N LT W
Sbjct: 43  VEFGSKIINVGGKYVKLQIWDTAGLERFRSVTRSYYRGAAGALLVYDITSRETYNALTNW 102
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L DAR  ++ N+VI+L GNK DLDA REV   E   FA+E+ L+F+ETSA    +VEEAF
Sbjct: 103 LTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGEDVEEAF 162
Query: 220 IDTAKEIYEK 229
           +  A++I  K
Sbjct: 163 VQCARKILNK 172

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score =  151 bits (382), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 73/133 (54%), Positives = 94/133 (70%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEF  R I +DGK IK QIWDTAGQE +R IT +YYRGA GALLVYDI +  T+ ++  W
Sbjct: 40  VEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERW 99
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++ R H++SN+VIML+GNKSDL   R V  +E   FA ++ L F+ETSA  +TNVEEAF
Sbjct: 100 LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAF 159
Query: 220 IDTAKEIYEKIQE 232
            +   EIY  + +
Sbjct: 160 KNILTEIYRIVSQ 172

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score =  150 bits (379), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 92/128 (71%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEF  R I +DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  W
Sbjct: 55  VEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 114
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++ R H++SN+VIML+GNKSDL   R V  +E   FA ++GL F+ETSA  +TNVE AF
Sbjct: 115 LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 174
Query: 220 IDTAKEIY 227
                EIY
Sbjct: 175 QTILTEIY 182

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score =  150 bits (378), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 73/128 (57%), Positives = 92/128 (71%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEF  R I +DGK IK QIWDTAGQE +R+IT +YYRGA GALLVYDI +  T+ ++  W
Sbjct: 64  VEFATRSIQVDGKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 123
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++ R H++SN+VIML+GNKSDL   R V  +E   FA ++GL F+ETSA  +TNVE AF
Sbjct: 124 LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183
Query: 220 IDTAKEIY 227
                EIY
Sbjct: 184 QTILTEIY 191

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score =  147 bits (371), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/128 (56%), Positives = 91/128 (71%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEF  R I +DGK IK QIWDTAG E +R+IT +YYRGA GALLVYDI +  T+ ++  W
Sbjct: 43  VEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 102
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++ R H++SN+VIML+GNKSDL   R V  +E   FA ++GL F+ETSA  +TNVE AF
Sbjct: 103 LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 162
Query: 220 IDTAKEIY 227
                EIY
Sbjct: 163 QTILTEIY 170

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score =  147 bits (370), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 72/128 (56%), Positives = 91/128 (71%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEF  R I +DGK IK QIWDTAG E +R+IT +YYRGA GALLVYDI +  T+ ++  W
Sbjct: 64  VEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 123
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++ R H++SN+VIML+GNKSDL   R V  +E   FA ++GL F+ETSA  +TNVE AF
Sbjct: 124 LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 183
Query: 220 IDTAKEIY 227
                EIY
Sbjct: 184 QTILTEIY 191

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score =  144 bits (364), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/128 (55%), Positives = 90/128 (70%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEF  R I +DGK IK QIWDTAG E +R+IT +YYRGA GALLVYDI +  T+ ++  W
Sbjct: 40  VEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 99
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++ R H++SN+VI L+GNKSDL   R V  +E   FA ++GL F+ETSA  +TNVE AF
Sbjct: 100 LKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 159
Query: 220 IDTAKEIY 227
                EIY
Sbjct: 160 QTILTEIY 167

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score =  144 bits (364), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/128 (55%), Positives = 90/128 (70%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEF  R I +DGK IK QIWDTAG E +R+IT +YYRGA GALLVYDI +  T+ ++  W
Sbjct: 46  VEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERW 105
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++ R H++SN+VI L+GNKSDL   R V  +E   FA ++GL F+ETSA  +TNVE AF
Sbjct: 106 LKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAF 165
Query: 220 IDTAKEIY 227
                EIY
Sbjct: 166 QTILTEIY 173

>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With Rab8a:gppnhp Length = 174

Iteration: 1
 Score =  144 bits (362), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 98/133 (73%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F  R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++  W
Sbjct: 41  IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 100
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           + +  +H+++++  M++GNK D++ +R+V KE GE  A ++G+ FMETSAK   NVE AF
Sbjct: 101 IRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 160
Query: 220 IDTAKEIYEKIQE 232
              A++I  K+ +
Sbjct: 161 FTLARDIKAKMDK 173

>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4 Length = 183

Iteration: 1
 Score =  143 bits (361), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 98/133 (73%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F  R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++  W
Sbjct: 43  IDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNW 102
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           + +  +H+++++  M++GNK D++ +R+V KE GE  A ++G+ FMETSAK   NVE AF
Sbjct: 103 IRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAF 162
Query: 220 IDTAKEIYEKIQE 232
              A++I  K+ +
Sbjct: 163 FTLARDIKAKMDK 175

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 66/138 (47%), Positives = 97/138 (70%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEF  R + I+GK+IK QIWDTAGQE +R+IT +YYRGA GAL+VYDI++  ++ +   W
Sbjct: 48  VEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW 107
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L + R++++ N+ + LIGNKSDL   R V  EE + FA+E+ L+F ETSA  + NV++AF
Sbjct: 108 LSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAF 167
Query: 220 IDTAKEIYEKIQEGVFDI 237
            +    IY+K+ +   D+
Sbjct: 168 EELINTIYQKVSKHQMDL 185

>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With The Coiled- Coil Domain Of Lida From Legionella Pneumophila Length = 196

Iteration: 1
 Score =  140 bits (352), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 66/134 (49%), Positives = 96/134 (71%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  W
Sbjct: 51  VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 110
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++  ++++ N+  +L+GNK DL  ++ V     + FA   G+ F+ETSAK ATNVE++F
Sbjct: 111 LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 170
Query: 220 IDTAKEIYEKIQEG 233
           +  A EI +++  G
Sbjct: 171 MTMAAEIKKRMGPG 184

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 92/133 (69%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEF  R + +    +K QIWDTAG E +R+IT +YYRGA GALLV+D+T+ +T+  +  W
Sbjct: 60  VEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERW 119
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++   H+ + +V+ML+GNKSDL   REV  EE  +FA  +GL+F+ETSA  +TNVE AF
Sbjct: 120 LKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 179
Query: 220 IDTAKEIYEKIQE 232
               KEI+ K+ +
Sbjct: 180 ETVLKEIFAKVSK 192

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score =  139 bits (349), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/133 (48%), Positives = 92/133 (69%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEF  R + +    +K QIWDTAG E +R+IT +YYRGA GALLV+D+T+ +T+  +  W
Sbjct: 45  VEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERW 104
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++   H+ + +V+ML+GNKSDL   REV  EE  +FA  +GL+F+ETSA  +TNVE AF
Sbjct: 105 LKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAF 164
Query: 220 IDTAKEIYEKIQE 232
               KEI+ K+ +
Sbjct: 165 ETVLKEIFAKVSK 177

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score =  138 bits (348), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/128 (53%), Positives = 92/128 (71%), Gaps = 1/128 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  + + I GK++KLQIWDTAGQE FR+IT+SYYR A GA+L YDIT+R +F  +  W
Sbjct: 64  VDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHW 123
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEA 218
           +ED R+++ SN+V +LIGNKSDL   REV   E +  A  +  L  +ETSAK ++NVEEA
Sbjct: 124 IEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEA 183
Query: 219 FIDTAKEI 226
           F+  A E+
Sbjct: 184 FLRVATEL 191

>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In Complex With The Coiled-Coil Domain Of Lida From Legionella Pneumophila Length = 181

Iteration: 1
 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 95/131 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  W
Sbjct: 51  VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 110
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++  ++++ N+  +L+GNK DL  ++ V     + FA   G+ F+ETSAK ATNVE++F
Sbjct: 111 LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 170
Query: 220 IDTAKEIYEKI 230
           +  A EI +++
Sbjct: 171 MTMAAEIKKRM 181

>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure Length = 171

Iteration: 1
 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 95/131 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  W
Sbjct: 41  VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 100
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++  ++++ N+  +L+GNK DL  ++ V     + FA   G+ F+ETSAK ATNVE++F
Sbjct: 101 LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160
Query: 220 IDTAKEIYEKI 230
           +  A EI +++
Sbjct: 161 MTMAAEIKKRM 171

>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A Length = 164

Iteration: 1
 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 95/131 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  W
Sbjct: 34  VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 93
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++  ++++ N+  +L+GNK DL  ++ V     + FA   G+ F+ETSAK ATNVE++F
Sbjct: 94  LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 153
Query: 220 IDTAKEIYEKI 230
           +  A EI +++
Sbjct: 154 MTMAAEIKKRM 164

>pdb|4FMC|B Chain B, Espg-Rab1 Complex Length = 171

Iteration: 1
 Score =  138 bits (347), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 95/131 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  W
Sbjct: 41  VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 100
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++  ++++ N+  +L+GNK DL  ++ V     + FA   G+ F+ETSAK ATNVE++F
Sbjct: 101 LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 160
Query: 220 IDTAKEIYEKI 230
           +  A EI +++
Sbjct: 161 MTMAAEIKKRM 171

>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp Length = 191

Iteration: 1
 Score =  137 bits (346), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 95/131 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  W
Sbjct: 60  VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 119
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++  ++++ N+  +L+GNK DL  ++ V     + FA   G+ F+ETSAK ATNVE++F
Sbjct: 120 LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 179
Query: 220 IDTAKEIYEKI 230
           +  A EI +++
Sbjct: 180 MTMAAEIKKRM 190

>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase Rab1a Length = 175

Iteration: 1
 Score =  137 bits (345), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 64/132 (48%), Positives = 96/132 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  R I+++ K +KLQIWDTAGQE FR+IT SYYRGA G ++VYD+T R++F+++  W
Sbjct: 44  VDFKIRTISLENKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDRDSFDNVKQW 103
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           +++  +++  N+  +L+GNK DL ++R V  +EG   A  HG+ F+ETSAK A NVE+AF
Sbjct: 104 IQEIDRYAMENVNKLLVGNKCDLVSKRVVTSDEGRELADSHGIKFIETSAKNAYNVEQAF 163
Query: 220 IDTAKEIYEKIQ 231
              A EI +++Q
Sbjct: 164 HTMAGEIKKRVQ 175

>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1 Length = 199

Iteration: 1
 Score =  136 bits (343), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 65/127 (51%), Positives = 91/127 (71%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  W
Sbjct: 68  VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 127
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++  ++++ N+  +L+GNK DL  ++ V     + FA   G+ F+ETSAK ATNVE++F
Sbjct: 128 LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 187
Query: 220 IDTAKEI 226
              A EI
Sbjct: 188 XTXAAEI 194

>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain Of Lepb In Complex With Rab1b Bound To Gdp And Bef3 Length = 181

Iteration: 1
 Score =  136 bits (343), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 95/131 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E++ ++  W
Sbjct: 44  VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQW 103
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++  ++++ N+  +L+GNKSDL  ++ V     + FA   G+ F+ETSAK ATNVE+AF
Sbjct: 104 LQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163
Query: 220 IDTAKEIYEKI 230
           +  A EI +++
Sbjct: 164 MTMAAEIKKRM 174

>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA Length = 175

Iteration: 1
 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 65/131 (49%), Positives = 95/131 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E++ ++  W
Sbjct: 44  VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESYANVKQW 103
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++  ++++ N+  +L+GNKSDL  ++ V     + FA   G+ F+ETSAK ATNVE+AF
Sbjct: 104 LQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAF 163
Query: 220 IDTAKEIYEKI 230
           +  A EI +++
Sbjct: 164 MTMAAEIKKRM 174

>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)- Imidotriphosphate Length = 170

Iteration: 1
 Score =  134 bits (337), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F  + + I+GK++KLQIWDTAGQE FR+IT +YYRGA G +LVYDIT   TF ++  W
Sbjct: 38  IDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQW 97
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
            +   +H+N    ++L+GNKSD++ R  V  ++GE  A+E G+ F+E+SAK   NV E F
Sbjct: 98  FKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
Query: 220 IDTAKEIYEKI 230
              AK I EKI
Sbjct: 157 FTLAKLIQEKI 167

>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1 (Gtpase Domain) Complex Length = 175

Iteration: 1
 Score =  134 bits (337), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 94/131 (71%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  W
Sbjct: 43  VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 102
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++  ++++ N+  +L+G K DL  ++ V     + FA   G+ F+ETSAK ATNVE++F
Sbjct: 103 LQEIDRYASENVNKLLVGIKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSF 162
Query: 220 IDTAKEIYEKI 230
           +  A EI +++
Sbjct: 163 MTMAAEIKKRM 173

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score =  133 bits (335), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 66/129 (51%), Positives = 91/129 (70%), Gaps = 1/129 (0%)
Query: 100 VEFGARMITI-DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           VEF  + I + + K IK QIWDTAGQE +R+IT +YYRGA GALLVYDIT++ +F ++  
Sbjct: 42  VEFATKSIQLKNNKIIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITKKNSFENIEK 101
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL++ R +++SN+VI+L+GNKSDL   R +   +   +A++  L F+ETSA  ATNVE A
Sbjct: 102 WLKELRDNADSNIVILLVGNKSDLKHLRVINDNDATQYAKKEKLAFIETSALEATNVELA 161
Query: 219 FIDTAKEIY 227
           F     EIY
Sbjct: 162 FHQLLNEIY 170

>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex Length = 206

Iteration: 1
 Score =  133 bits (334), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 60/133 (45%), Positives = 96/133 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  + + +DGK +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  W
Sbjct: 43  VDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW 102
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++  +++ S ++ +L+GNK DL  +R V+ +  + FA  + + F+ETSA  +TNVE+AF
Sbjct: 103 LQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162
Query: 220 IDTAKEIYEKIQE 232
           +  A++I E + +
Sbjct: 163 LTMARQIKESMSQ 175

>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With Prenylated Ypt1 Gtpase Length = 206

Iteration: 1
 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/133 (45%), Positives = 96/133 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  + + +DGK +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  W
Sbjct: 43  VDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW 102
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++  +++ S ++ +L+GNK DL  +R V+ +  + FA  + + F+ETSA  +TNVE+AF
Sbjct: 103 LQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 162
Query: 220 IDTAKEIYEKIQE 232
           +  A++I E + +
Sbjct: 163 LTMARQIKESMSQ 175

>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp Length = 170

Iteration: 1
 Score =  133 bits (334), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/131 (48%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F  + + I+GK++KLQIWDTAGQE FR+IT +YYRGA G +LVYDIT   TF ++  W
Sbjct: 38  IDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAXGIILVYDITDERTFTNIKQW 97
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
            +   +H+N    ++L+GNKSD + R  V  ++GE  A+E G+ F+E+SAK   NV E F
Sbjct: 98  FKTVNEHANDEAQLLLVGNKSDXETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
Query: 220 IDTAKEIYEKI 230
              AK I EKI
Sbjct: 157 FTLAKLIQEKI 167

>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef Domain, And Phosphate Complex Length = 174

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F  + + I+GK++KLQ+WDTAGQE FR+IT +YYRGA G +LVYD+T   TF ++  W
Sbjct: 42  IDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQW 101
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
            +   +H+N    ++L+GNKSD++ R  V  ++GE  A+E G+ F+E+SAK   NV E F
Sbjct: 102 FKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 160
Query: 220 IDTAKEIYEKI 230
              AK I EKI
Sbjct: 161 FTLAKLIQEKI 171

>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 59/127 (46%), Positives = 91/127 (71%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F  +++ +DG ++KLQ+WDTAGQE FRS+T +YYR A   LL+YD+T + +F+++  W
Sbjct: 46  IDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAW 105
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L +  +++  ++ +ML+GNK D    R VK+E+GE  A+E+GL FMETSAK   NV+ AF
Sbjct: 106 LTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAF 165
Query: 220 IDTAKEI 226
              AKE+
Sbjct: 166 TAIAKEL 172

>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi Length = 213

Iteration: 1
 Score =  132 bits (333), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 90/131 (68%), Gaps = 1/131 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F  + + I+GK++KLQ+WDTAGQE FR+IT +YYRGA G +LVYD+T   TF ++  W
Sbjct: 55  IDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQW 114
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
            +   +H+N    ++L+GNKSD++ R  V  ++GE  A+E G+ F+E+SAK   NV E F
Sbjct: 115 FKTVNEHANDEAQLLLVGNKSDMETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 173
Query: 220 IDTAKEIYEKI 230
              AK I EKI
Sbjct: 174 FTLAKLIQEKI 184

>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase Length = 185

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 60/129 (46%), Positives = 94/129 (72%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  + + +DGK +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  W
Sbjct: 56  VDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMW 115
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L++  +++ S ++ +L+GNK DL  +R V+ +  + FA  + + F+ETSA  +TNVE+AF
Sbjct: 116 LQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAF 175
Query: 220 IDTAKEIYE 228
           +  A++I E
Sbjct: 176 LTMARQIKE 184

>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab Gtpase Sec4p Length = 170

Iteration: 1
 Score =  131 bits (330), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 89/131 (67%), Gaps = 1/131 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F  + + I+GK++KLQ+WDTAGQE FR+IT +YYRGA G +LVYD+T   TF ++  W
Sbjct: 38  IDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAXGIILVYDVTDERTFTNIKQW 97
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
            +   +H+N    ++L+GNKSD + R  V  ++GE  A+E G+ F+E+SAK   NV E F
Sbjct: 98  FKTVNEHANDEAQLLLVGNKSDXETRV-VTADQGEALAKELGIPFIESSAKNDDNVNEIF 156
Query: 220 IDTAKEIYEKI 230
              AK I EKI
Sbjct: 157 FTLAKLIQEKI 167

>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue Length = 201

Iteration: 1
 Score =  128 bits (322), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 59/127 (46%), Positives = 88/127 (69%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  + + I+G+++KLQIWDTAGQE FRSIT+SYYR A   +L YDIT  E+F  L  W
Sbjct: 61  VDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEW 120
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L +  Q++++ ++ +L+GNK DL  RREV ++  E F+    + ++ETSAK + NVE+ F
Sbjct: 121 LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLF 180
Query: 220 IDTAKEI 226
           +D A  +
Sbjct: 181 LDLACRL 187

>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp Length = 185

Iteration: 1
 Score =  127 bits (318), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 63/146 (43%), Positives = 97/146 (66%), Gaps = 6/146 (4%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEF  R I ++ K+IK QIWDTAG E +R+IT +YYRGA GAL+VYDI++  ++ +   W
Sbjct: 45  VEFATRTIEVENKKIKAQIWDTAGLERYRAITSAYYRGAVGALIVYDISKSSSYENCNHW 104
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L + R++++ N+ + LIGNKSDL   R V  +E + FA E+ ++F ETSA  + NV++AF
Sbjct: 105 LTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAMENQMLFTETSALNSDNVDKAF 164
Query: 220 IDTAKEIYEKIQEGVFDITNEVDLVG 245
            +    I++ + +      ++VDL G
Sbjct: 165 RELIVAIFQMVSK------HQVDLSG 184

>pdb|1X3S|A Chain A, Crystal Structure Of Human Rab18 In Complex With Gppnhp Length = 195

Iteration: 1
 Score =  124 bits (312), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 64/132 (48%), Positives = 87/132 (65%), Gaps = 6/132 (4%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  + I++DG + KL IWDTAGQE FR++T SYYRGA G +LVYD+TRR+TF  L  W
Sbjct: 50  VDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNW 109
Query: 160 LEDARQHSNSNMVI-MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           L +   +   N ++  L+GNK D +  REV + EG  FAR+H  +F+E SAK    V+ A
Sbjct: 110 LNELETYCTRNDIVNXLVGNKIDKE-NREVDRNEGLKFARKHSXLFIEASAKTCDGVQCA 168
Query: 219 FIDTAKEIYEKI 230
           F    +E+ EKI
Sbjct: 169 F----EELVEKI 176

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score =  124 bits (312), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 85/125 (68%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++V+D+T + +F     W++
Sbjct: 49  FFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQ 108
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + +   N NMV+ L GNKSDL   R+V  E+ + +A+E+GL FMETSAK ATNV+E F +
Sbjct: 109 ELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYE 168
Query: 222 TAKEI 226
            A+ +
Sbjct: 169 IARRL 173

>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex With Gdp Length = 192

Iteration: 1
 Score =  124 bits (311), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 92/132 (69%), Gaps = 1/132 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  + + + GK+I+LQIWDTAGQE F SIT +YYR A G +LVYDIT++ETF+ L  W
Sbjct: 61  VDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKW 120
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEA 218
           ++   ++++ +  ++L+GNK D +  RE+ +++GE FA++  G+ F E SAK   NV+E 
Sbjct: 121 MKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEI 180
Query: 219 FIDTAKEIYEKI 230
           F+    +I +K+
Sbjct: 181 FLKLVDDILKKM 192

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score =  122 bits (306), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 55/125 (44%), Positives = 86/125 (68%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + +D   +K +IWDTAGQE + S+   YYRGA  A++VYDIT +ETF    TW++
Sbjct: 45  FLTQSVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNQETFARAKTWVK 104
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + ++ ++ ++VI L GNK+DL  +R V+ EE + +A ++ L+FMETSAK A NV + F+ 
Sbjct: 105 ELQRQASPSIVIALAGNKADLANKRMVEYEEAQAYADDNSLLFMETSAKTAMNVNDLFLA 164
Query: 222 TAKEI 226
            AK++
Sbjct: 165 IAKKL 169

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 85/125 (68%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + +D   +K +IWDTAGQE + S+   YYRGA  A++VYDIT  +TF     W++
Sbjct: 42  FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVK 101
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + ++ ++ N+VI L GNK+DL ++R V+ +E + +A ++ L+FMETSAK A NV E F+ 
Sbjct: 102 ELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMA 161
Query: 222 TAKEI 226
            AK++
Sbjct: 162 IAKKL 166

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score =  121 bits (303), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 54/125 (43%), Positives = 85/125 (68%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + +D   +K +IWDTAGQE + S+   YYRGA  A++VYDIT  +TF     W++
Sbjct: 40  FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVK 99
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + ++ ++ N+VI L GNK+DL ++R V+ +E + +A ++ L+FMETSAK A NV E F+ 
Sbjct: 100 ELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMA 159
Query: 222 TAKEI 226
            AK++
Sbjct: 160 IAKKL 164

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score =  120 bits (301), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 85/120 (70%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F ++ + ++ + I+LQ+WDTAGQE FRS+  SY R +A A++VYDIT   +F   T W
Sbjct: 41  IDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKW 100
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           ++D R    S+++IML+GNK+DL  +R+V  EEGE  A+E  ++F+ETSAK   NV++ F
Sbjct: 101 IDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 84/125 (67%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + +D   +K +IWDTAG E + S+   YYRGA  A++VYDIT  +TF     W++
Sbjct: 42  FLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNTDTFARAKNWVK 101
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + ++ ++ N+VI L GNK+DL ++R V+ +E + +A ++ L+FMETSAK A NV E F+ 
Sbjct: 102 ELQRQASPNIVIALAGNKADLASKRAVEFQEAQAYADDNSLLFMETSAKTAMNVNEIFMA 161
Query: 222 TAKEI 226
            AK++
Sbjct: 162 IAKKL 166

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score =  118 bits (295), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 84/120 (70%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F ++ + ++ + I+LQ+WDTAG E FRS+  SY R +A A++VYDIT   +F   T W
Sbjct: 48  IDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKW 107
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           ++D R    S+++IML+GNK+DL  +R+V  EEGE  A+E  ++F+ETSAK   NV++ F
Sbjct: 108 IDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 167

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 83/125 (66%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + +D   +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F     W++
Sbjct: 44  FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 103
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + ++ ++ N+VI L GNK+DL  +R V  +E + +A ++ L+FMETSAK + NV E F+ 
Sbjct: 104 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 163
Query: 222 TAKEI 226
            AK++
Sbjct: 164 IAKKL 168

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 85/120 (70%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R +  A++VYDIT   +F+  + W
Sbjct: 49  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKW 108
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           ++D R    S+++IML+GNK+DL  +R+V  EEGE  A+E  ++F+ETSAK   NV++ F
Sbjct: 109 IDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLF 168

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 83/125 (66%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + +D   +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F     W++
Sbjct: 43  FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + ++ ++ N+VI L GNK+DL  +R V  +E + +A ++ L+FMETSAK + NV E F+ 
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162
Query: 222 TAKEI 226
            AK++
Sbjct: 163 IAKKL 167

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 83/125 (66%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + +D   +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F     W++
Sbjct: 43  FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + ++ ++ N+VI L GNK+DL  +R V  +E + +A ++ L+FMETSAK + NV E F+ 
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162
Query: 222 TAKEI 226
            AK++
Sbjct: 163 IAKKL 167

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 83/125 (66%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + +D   +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F     W++
Sbjct: 43  FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + ++ ++ N+VI L GNK+DL  +R V  +E + +A ++ L+FMETSAK + NV E F+ 
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162
Query: 222 TAKEI 226
            AK++
Sbjct: 163 IAKKL 167

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 83/125 (66%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + +D   +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F     W++
Sbjct: 43  FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + ++ ++ N+VI L GNK+DL  +R V  +E + +A ++ L+FMETSAK + NV E F+ 
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162
Query: 222 TAKEI 226
            AK++
Sbjct: 163 IAKKL 167

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 83/125 (66%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + +D   +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F     W++
Sbjct: 43  FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + ++ ++ N+VI L GNK+DL  +R V  +E + +A ++ L+FMETSAK + NV E F+ 
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162
Query: 222 TAKEI 226
            AK++
Sbjct: 163 IAKKL 167

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score =  117 bits (293), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 53/125 (42%), Positives = 83/125 (66%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + +D   +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F     W++
Sbjct: 43  FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + ++ ++ N+VI L GNK+DL  +R V  +E + +A ++ L+FMETSAK + NV E F+ 
Sbjct: 103 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 162
Query: 222 TAKEI 226
            AK++
Sbjct: 163 IAKKL 167

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score =  117 bits (292), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 84/120 (70%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R +  A++VYDIT   +F   T W
Sbjct: 36  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKW 95
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           ++D R    S+++IML+GNK+DL  +R+V  EEGE  A+E  ++F+ETSAK   NV++ F
Sbjct: 96  IDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 155

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score =  116 bits (291), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 53/129 (41%), Positives = 87/129 (67%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R +  A++VYDIT   +F   + W
Sbjct: 37  IDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNLNSFQQTSKW 96
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           ++D R    S+++IML+GNK+DL  +R++  EEGE  A+E  ++F+ETSAK   NV++ F
Sbjct: 97  IDDVRTERGSDVIIMLVGNKTDLADKRQITIEEGEQRAKELSVMFIETSAKTGYNVKQLF 156
Query: 220 IDTAKEIYE 228
              A  + E
Sbjct: 157 RRVASALLE 165

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 82/125 (65%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + +D   +K +IWDTAG E + S+   YYRGA  A++VYDIT  E+F     W++
Sbjct: 42  FLTQTVCLDDTTVKFEIWDTAGLERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVK 101
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + ++ ++ N+VI L GNK+DL  +R V  +E + +A ++ L+FMETSAK + NV E F+ 
Sbjct: 102 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMA 161
Query: 222 TAKEI 226
            AK++
Sbjct: 162 IAKKL 166

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score =  114 bits (286), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/125 (41%), Positives = 81/125 (64%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + +D   +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F     W++
Sbjct: 44  FLTQTVCLDDTTVKFEIWDTAGQERYHSLAPXYYRGAQAAIVVYDITNEESFARAKNWVK 103
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + ++ ++ N+VI L GNK+DL  +R V  +E + +A ++ L+F ETSAK + NV E F  
Sbjct: 104 ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFXETSAKTSXNVNEIFXA 163
Query: 222 TAKEI 226
            AK++
Sbjct: 164 IAKKL 168

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score =  114 bits (285), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 83/120 (69%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F ++ + ++ + ++LQ+WDTAG E FRS+  SY R +  A++VYDIT   +F   T W
Sbjct: 41  IDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKW 100
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           ++D R    S+++IML+GNK+DL  +R+V  EEGE  A+E  ++F+ETSAK   NV++ F
Sbjct: 101 IDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 160

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score =  114 bits (285), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 52/120 (43%), Positives = 83/120 (69%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F ++ + ++ + ++LQ+WDTAG E FRS+  SY R +  A++VYDIT   +F   T W
Sbjct: 51  IDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTKW 110
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           ++D R    S+++IML+GNK+DL  +R+V  EEGE  A+E  ++F+ETSAK   NV++ F
Sbjct: 111 IDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLF 170

>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35 Length = 181

Iteration: 1
 Score =  113 bits (282), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 55/120 (45%), Positives = 82/120 (68%), Gaps = 1/120 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  R + I+G+++KLQIWDTAGQE FR+IT +YYRG  G ++VYD+T  E+F ++  W
Sbjct: 44  VDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRW 103
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           L +  Q+ + ++  +L+GNK+D   R+ V+ E+   FA + G+   ETSAK   NVEE F
Sbjct: 104 LHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMF 162

>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp Length = 191

Iteration: 1
 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/134 (40%), Positives = 83/134 (61%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F  + +    K++KLQIWDTAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W
Sbjct: 58  IDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW 117
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
               + +S  N  ++L+GNK D++  R V  E+G++ A + G  F E SAK   +V +AF
Sbjct: 118 ATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAF 177
Query: 220 IDTAKEIYEKIQEG 233
                 I +K+ + 
Sbjct: 178 ERLVDAICDKMSDS 191

>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase Length = 169

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 75/112 (66%)
Query: 115 KLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIM 174
           K  IWDTAGQE FR++   YYRG+A A++VYDIT+ ETF+ L  W+ + RQH   ++V+ 
Sbjct: 55  KFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 114
Query: 175 LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           + GNK DL   REV + + + +A     +F+ETSAK A N+ E FI+ ++ I
Sbjct: 115 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/127 (41%), Positives = 83/127 (65%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F ++ + +D   ++LQ+WDTAGQE FRS+  SY R +A A++VYDIT R++F + T W
Sbjct: 36  IDFLSKTLYLDEGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKW 95
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           ++D       +++I L+GNK+DL   R+V  EEG   A+E+   F ETSAK   N++  F
Sbjct: 96  IQDILNERGKDVIIALVGNKTDLGDLRKVTYEEGXQKAQEYNTXFHETSAKAGHNIKVLF 155
Query: 220 IDTAKEI 226
             TA ++
Sbjct: 156 KKTASKL 162

>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution Length = 169

Iteration: 1
 Score =  112 bits (279), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/130 (43%), Positives = 78/130 (60%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F  + I  + K+IKLQIWDTAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  W
Sbjct: 40  IDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDW 99
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
               + +S  N  ++L+GNK D++  R V  E G   A   G  F E SAK   NV++ F
Sbjct: 100 STQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 159
Query: 220 IDTAKEIYEK 229
                 I EK
Sbjct: 160 ERLVDVICEK 169

>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp Length = 189

Iteration: 1
 Score =  111 bits (277), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/133 (42%), Positives = 80/133 (60%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F  + +    K+IKLQIWDTAGQE +R+IT +YYRGA G LL+YDI  +E+F  +  W
Sbjct: 57  IDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDW 116
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
               + +S  N  ++L+GNK DL+  R V  E+G   A + G  F E SAK   NV++ F
Sbjct: 117 ATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVF 176
Query: 220 IDTAKEIYEKIQE 232
                 I EK+ E
Sbjct: 177 ERLVDVICEKMNE 189

>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With The Minimal Rab Binding Domain Of Rabenosyn-5 Length = 170

Iteration: 1
 Score =  109 bits (272), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/112 (45%), Positives = 74/112 (66%)
Query: 115 KLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIM 174
           K  IWDTAG E FR++   YYRG+A A++VYDIT+ ETF+ L  W+ + RQH   ++V+ 
Sbjct: 56  KFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVA 115
Query: 175 LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           + GNK DL   REV + + + +A     +F+ETSAK A N+ E FI+ ++ I
Sbjct: 116 IAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 167

>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal Structure Of The Small G Protein Rab3a Complexed With The Effector Domain Of Rabphilin-3a Length = 203

Iteration: 1
 Score =  109 bits (272), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 57/135 (42%), Positives = 77/135 (57%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           ++F  + I  + K+IKLQIWDTAG E +R+IT +YYRGA G +L YDIT  E+FN +  W
Sbjct: 43  IDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAXGFILXYDITNEESFNAVQDW 102
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
               + +S  N  ++L+GNK D +  R V  E G   A   G  F E SAK   NV++ F
Sbjct: 103 STQIKTYSWDNAQVLLVGNKCDXEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTF 162
Query: 220 IDTAKEIYEKIQEGV 234
                 I EK  E +
Sbjct: 163 ERLVDVICEKXSESL 177

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score =  107 bits (268), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 52/128 (40%), Positives = 80/128 (62%), Gaps = 3/128 (2%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + +TI+   +K +IWDTAGQE F S+   YYR A  AL+VYD+T+ ++F     W++
Sbjct: 40  FLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVK 99
Query: 162 DARQHSNSNMVIMLIGNKSDL---DARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           +  + ++ +++I L+GNK D       R+V +EEGE  A E GL+F ETSAK   NV + 
Sbjct: 100 ELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDV 159
Query: 219 FIDTAKEI 226
           F+   ++I
Sbjct: 160 FLGIGEKI 167

>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp Analogue Length = 192

Iteration: 1
 Score =  107 bits (267), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 50/125 (40%), Positives = 79/125 (63%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + +    +  K  IWDTAGQE F S+   YYRG+A A++VYDIT++++F  L  W++
Sbjct: 60  FMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVK 119
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + ++H   N+V+ + GNK DL   REV  ++ + +A   G + +ETSAK A N+EE F  
Sbjct: 120 ELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQG 179
Query: 222 TAKEI 226
            +++I
Sbjct: 180 ISRQI 184

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/136 (38%), Positives = 87/136 (63%), Gaps = 6/136 (4%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  + + +DG++  LQ+WDTAGQE FRSI +SY+R A G LL+YD+T  ++F ++  W
Sbjct: 63  VDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREW 122
Query: 160 LEDARQHSNSNMVIMLIGNKSDL------DARREVKKEEGEVFAREHGLVFMETSAKLAT 213
           ++     ++  + IML+GNK+D+      + ++ V    GE  A  +G +F ETSAK  +
Sbjct: 123 VDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGS 182
Query: 214 NVEEAFIDTAKEIYEK 229
           N+ EA +  A+E+ ++
Sbjct: 183 NIVEAVLHLAREVKKR 198

>pdb|4FMC|F Chain F, Espg-Rab1 Complex Length = 117

Iteration: 1
 Score =  104 bits (260), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 65/83 (78%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  W
Sbjct: 33  VDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQW 92
Query: 160 LEDARQHSNSNMVIMLIGNKSDL 182
           L++  ++++ N+  +L+GNK DL
Sbjct: 93  LQEIDRYASENVNKLLVGNKCDL 115

>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution Length = 184

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 75/127 (59%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + I GK++ L IWDTAGQE F ++   YYR + GA+LVYDIT  ++F  +  W++
Sbjct: 57  FLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVK 116
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + R+   + + + ++GNK DL+  R V  +E E +A   G     TSAK    +EE F+D
Sbjct: 117 ELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 176
Query: 222 TAKEIYE 228
             K + E
Sbjct: 177 LCKRMIE 183

>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution Length = 170

Iteration: 1
 Score =  102 bits (255), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 75/127 (59%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + I GK++ L IWDTAGQE F ++   YYR + GA+LVYDIT  ++F  +  W++
Sbjct: 43  FLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVK 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + R+   + + + ++GNK DL+  R V  +E E +A   G     TSAK    +EE F+D
Sbjct: 103 ELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162
Query: 222 TAKEIYE 228
             K + E
Sbjct: 163 LCKRMIE 169

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score =  102 bits (254), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 75/127 (59%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + I GK++ L IWDTAGQE F ++   YYR + GA+LVYDIT  ++F  +  W++
Sbjct: 43  FLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVK 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           + R+   + + + ++GNK DL+  R V  +E E +A   G     TSAK    +EE F+D
Sbjct: 103 ELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLD 162
Query: 222 TAKEIYE 228
             K + E
Sbjct: 163 LCKRMIE 169

>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase Length = 189

Iteration: 1
 Score =  100 bits (249), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/132 (39%), Positives = 80/132 (60%), Gaps = 5/132 (3%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFR-SITRSYYRGAAGALLVYDITRRETFNHLTT 158
           V+F  R + IDG++IK+Q+WDTAGQE FR S+ + YYR     + VYD+T   +F+ L  
Sbjct: 55  VDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPA 114
Query: 159 WLEDARQHSNSNMVI-MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATN--- 214
           W+E+ +QH  +N +  +L+GNK DL +  +V  +  + FA  H +   ETSAK   +   
Sbjct: 115 WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH 174
Query: 215 VEEAFIDTAKEI 226
           VE  F+  A ++
Sbjct: 175 VEAIFMTLAHKL 186

>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a Length = 195

Iteration: 1
 Score =  100 bits (248), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Query: 111 GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS- 169
           G++I LQ+WDTAG E FRS+T +++R A G LL++D+T  ++F ++  W+   + H+ S 
Sbjct: 67  GQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSE 126
Query: 170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           N  I+L GNKSDL+ +R VK+EE    A ++G+ + ETSA   TN+  A
Sbjct: 127 NPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHA 175

>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 198

Iteration: 1
 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 48/113 (42%), Positives = 70/113 (61%), Gaps = 2/113 (1%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFR-SITRSYYRGAAGALLVYDITRRETFNHLTT 158
           V+F  R + IDG++IK+Q+WDTAGQE FR S+ + YYR     + VYD T   +F+ L  
Sbjct: 64  VDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDXTNXASFHSLPA 123
Query: 159 WLEDARQHSNSNMVI-MLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK 210
           W+E+ +QH  +N +  +L+GNK DL +  +V  +  + FA  H     ETSAK
Sbjct: 124 WIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSXPLFETSAK 176

>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp Length = 217

Iteration: 1
 Score = 95.5 bits (236), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/133 (37%), Positives = 84/133 (63%), Gaps = 2/133 (1%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS-NM 171
           ++ LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F ++  W+   + ++   N 
Sbjct: 83  KVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 142
Query: 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231
            I+LIGNK+DL  +REV + +    A ++G+ + ETSA    NVE+A ++T  ++  K  
Sbjct: 143 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKA-VETLLDLIMKRM 201
Query: 232 EGVFDITNEVDLV 244
           E   + T   D V
Sbjct: 202 EQCVEKTQIPDTV 214

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 94.0 bits (232), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 48/118 (40%), Positives = 75/118 (63%), Gaps = 3/118 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
            IK  IWDTAGQE + SI   YYRGA  A++V+DI+   T +   TW+   +   +SN +
Sbjct: 92  NIKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLK--ISSNYI 149
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 230
           I+L+ NK D + + +V   E + +A+++ L+F++TSAK  TN++  F   A+EIY+ I
Sbjct: 150 IILVANKIDKN-KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206

>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 220

Iteration: 1
 Score = 92.4 bits (228), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 83/133 (62%), Gaps = 2/133 (1%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS-NM 171
           ++ LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++  W+   + ++   N 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231
            I+LIGNK+DL  +REV + +    A ++G+ + ETSA    NVE++ ++T  ++  K  
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS-VETLLDLIMKRM 187
Query: 232 EGVFDITNEVDLV 244
           E   + T   D V
Sbjct: 188 EKCVEKTQVPDTV 200

>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex With Monoprenylated Rab7 Protein Length = 207

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 50/147 (34%), Positives = 79/147 (53%), Gaps = 13/147 (8%)
Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW- 159
           +F  + + +D + + +QIWDTAGQE F+S+  ++YRGA   +LV+D+T   TF  L +W 
Sbjct: 44  DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR 103
Query: 160 ---LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
              L  A      N   +++GNK DL+ R+   K        ++ + + ETSAK A NVE
Sbjct: 104 DEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163
Query: 217 EAFIDTAK---------EIYEKIQEGV 234
           +AF   A+         E+Y +  E +
Sbjct: 164 QAFQTIARNALKQETEVELYNEFPEPI 190

>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Monoclinic Space Group Length = 200

Iteration: 1
 Score = 92.0 bits (227), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 83/133 (62%), Gaps = 2/133 (1%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS-NM 171
           ++ LQ+WDTAG E FRS+T +++R A G LL++D+T +++F ++  W+   + ++   N 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP 128
Query: 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231
            I+LIGNK+DL  +REV + +    A ++G+ + ETSA    NVE++ ++T  ++  K  
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS-VETLLDLIMKRM 187
Query: 232 EGVFDITNEVDLV 244
           E   + T   D V
Sbjct: 188 EKCVEKTQVPDTV 200

>pdb|1VG1|A Chain A, Gdp-bound Rab7 Length = 185

Iteration: 1
 Score = 91.7 bits (226), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 47/128 (36%), Positives = 73/128 (57%), Gaps = 4/128 (3%)
Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW- 159
           +F  + + +D + + +QIWDTAGQE F+S+  ++YRGA   +LV+D+T   TF  L +W 
Sbjct: 44  DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR 103
Query: 160 ---LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
              L  A      N   +++GNK DL+ R+   K        ++ + + ETSAK A NVE
Sbjct: 104 DEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163
Query: 217 EAFIDTAK 224
           +AF   A+
Sbjct: 164 QAFQTIAR 171

>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7 Length = 207

Iteration: 1
 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 13/147 (8%)
Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW- 159
           +F  + + +D + + +QIWDTAGQE F+S+  ++YRGA   +LV+D+T   TF  L +W 
Sbjct: 44  DFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR 103
Query: 160 ---LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
              L  A      N   +++GNK D + R+   K        ++ + + ETSAK A NVE
Sbjct: 104 DEFLIQASPRDPENFPFVVLGNKIDFENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163
Query: 217 EAFIDTAK---------EIYEKIQEGV 234
           +AF   A+         E+Y +  E +
Sbjct: 164 QAFQTIARNALKQETEVELYNEFPEPI 190

>pdb|1WMS|A Chain A, High Resolution Crystal Structure Of Human Rab9 Gtpase: A Novel Antiviral Drug Target Length = 177

Iteration: 1
 Score = 90.9 bits (224), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEF  + + +DG  + +QIWDTAGQE FRS+   +YRG+   LL + +   ++F +L+ W
Sbjct: 42  VEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNW 101
Query: 160 LEDARQHSN----SNMVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATN 214
            ++   +++     +   +++GNK D+ + R+V  EE + + R++G   + ETSAK ATN
Sbjct: 102 KKEFIYYADVKEPESFPFVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATN 160
Query: 215 VEEAFIDTAKEI 226
           V  AF +  + +
Sbjct: 161 VAAAFEEAVRRV 172

>pdb|1S8F|A Chain A, Crystal Structure Of Rab9 Complexed To Gdp Reveals A Dimer With An Active Conformation Of Switch Ii Length = 177

Iteration: 1
 Score = 90.5 bits (223), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 46/132 (34%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEF  + + +DG  + +QIWDTAGQE FRS+   +YRG+   LL + +   ++F +L+ W
Sbjct: 44  VEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNW 103
Query: 160 LEDARQHSN----SNMVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATN 214
            ++   +++     +   +++GNK D+ + R+V  EE + + R++G   + ETSAK ATN
Sbjct: 104 KKEFIYYADVKEPESFPFVILGNKIDI-SERQVSTEEAQAWCRDNGDYPYFETSAKDATN 162
Query: 215 VEEAFIDTAKEI 226
           V  AF +  + +
Sbjct: 163 VAAAFEEAVRRV 174

>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed With The Slp Homology Domain Of Slac2-AMELANOPHILIN Length = 203

Iteration: 1
 Score = 90.5 bits (223), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 81/133 (60%), Gaps = 2/133 (1%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS-NM 171
           ++ LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++  W    + ++   N 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231
            I+LIGNK+DL  +REV + +    A ++G+ + ETSA    NVE++ ++T  ++  K  
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKS-VETLLDLIXKRX 187
Query: 232 EGVFDITNEVDLV 244
           E   + T   D V
Sbjct: 188 EKCVEKTQVPDTV 200

>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In Hexagonal Space Group Length = 195

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 75/124 (60%), Gaps = 4/124 (3%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS-NM 171
           ++ LQ+WDTAG E FRS+T +++R A G LL +D+T +++F ++  W    + ++   N 
Sbjct: 69  KVHLQLWDTAGLERFRSLTTAFFRDAXGFLLXFDLTSQQSFLNVRNWXSQLQANAYCENP 128
Query: 172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE---EAFIDTAKEIYE 228
            I+LIGNK+DL  +REV + +    A ++G+ + ETSA    NVE   E  +D   +  E
Sbjct: 129 DIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEKSVETLLDLIXKRXE 188
Query: 229 KIQE 232
           K  E
Sbjct: 189 KCVE 192

>pdb|1YZL|A Chain A, Gppnhp-Bound Rab9 Gtpase Length = 179

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEF  + + +DG  + +QIWDTAGQE FRS+   +YRG+   LL + +   ++F +L+ W
Sbjct: 46  VEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNW 105
Query: 160 LEDARQHSN----SNMVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATN 214
            ++   +++     +   +++GNK+D+   R+V  EE + + +++G   + ETSAK +TN
Sbjct: 106 KKEFIYYADVKEPESFPFVILGNKTDI-KERQVSTEEAQAWCKDNGDYPYFETSAKDSTN 164
Query: 215 VEEAFIDTAKEI 226
           V  AF +  + I
Sbjct: 165 VAAAFEEAVRRI 176

>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras, In The Gdp- Bound State Length = 181

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 43/116 (37%), Positives = 69/116 (59%), Gaps = 1/116 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDA 163
           ++ ++DG   +L I DTAGQE F ++   Y R   G LLV+ I  R++FN +   + +  
Sbjct: 48  KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQIL 107
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           R     +  ++L+GNK+DL+++R+V + E   F   H + + E SAKL  NV+EAF
Sbjct: 108 RVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAF 163

>pdb|2OCB|A Chain A, Crystal Structure Of Human Rab9b In Complex With A Gtp Analogue Length = 180

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 48/132 (36%), Positives = 80/132 (60%), Gaps = 6/132 (4%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           VEF  R + +DG+ + LQIWDTAGQE F+S+   +YRGA   LL + +  R++F +L  W
Sbjct: 42  VEFLNRDLEVDGRFVTLQIWDTAGQERFKSLRTPFYRGADCCLLTFSVDDRQSFENLGNW 101
Query: 160 LEDARQHSN----SNMVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATN 214
            ++   +++     +   +++GNK D +  R+V  EE + +  E+G   ++ETSAK  TN
Sbjct: 102 QKEFIYYADVKDPEHFPFVVLGNKVDKE-DRQVTTEEAQTWCMENGDYPYLETSAKDDTN 160
Query: 215 VEEAFIDTAKEI 226
           V  AF +  +++
Sbjct: 161 VTVAFEEAVRQV 172

>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp) Length = 207

Iteration: 1
 Score = 89.4 bits (220), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 78/147 (53%), Gaps = 13/147 (8%)
Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW- 159
           +F  + + +D + + +QIWDTAG E F+S+  ++YRGA   +LV+D+T   TF  L +W 
Sbjct: 44  DFLTKEVMVDDRLVTMQIWDTAGLERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWR 103
Query: 160 ---LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
              L  A      N   +++GNK DL+ R+   K        ++ + + ETSAK A NVE
Sbjct: 104 DEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVE 163
Query: 217 EAFIDTAK---------EIYEKIQEGV 234
           +AF   A+         E+Y +  E +
Sbjct: 164 QAFQTIARNALKQETEVELYNEFPEPI 190

>pdb|1Z22|A Chain A, Gdp-Bound Rab23 Gtpase Crystallized In C222(1) Space Group Length = 168

Iteration: 1
 Score = 87.8 bits (216), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 47/120 (39%), Positives = 68/120 (56%), Gaps = 1/120 (0%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           V+F  R I ++ + ++L +WDTAGQE F +IT++YYRGA   +LV+  T RE+F  +++W
Sbjct: 40  VDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSW 99
Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
            E        ++   L+ NK DL     +K EE E  A+   L F  TS K   NV E F
Sbjct: 100 REKVVAEVG-DIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVF 158

>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A Novel Type Of Action Of A Bacterial Exoenzyme Length = 187

Iteration: 1
 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           + + +DG+++++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F     + E   
Sbjct: 57  KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 116
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           R   + N+  +L+GNKSDL+ +R+V  EE +  A +  + ++ETSAK   NV++ F D  
Sbjct: 117 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176
Query: 224 KEI 226
           +EI
Sbjct: 177 REI 179

>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding Domain Complex Length = 175

Iteration: 1
 Score = 87.0 bits (214), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           + + +DG+++++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F     + E   
Sbjct: 45  KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 104
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           R   + N+  +L+GNKSDL+ +R+V  EE +  A +  + ++ETSAK   NV++ F D  
Sbjct: 105 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 164
Query: 224 KEI 226
           +EI
Sbjct: 165 REI 167

>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium Botulinum C3 Exoenzyme By Rala Gtpase Length = 206

Iteration: 1
 Score = 87.0 bits (214), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           + + +DG+++++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F     + E   
Sbjct: 53  KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 112
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           R   + N+  +L+GNKSDL+ +R+V  EE +  A +  + ++ETSAK   NV++ F D  
Sbjct: 113 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 172
Query: 224 KEI 226
           +EI
Sbjct: 173 REI 175

>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two Novel Binding Sites That Are Also Present In Ras And Rap Length = 168

Iteration: 1
 Score = 86.7 bits (213), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 75/123 (60%), Gaps = 1/123 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           + + +DG+++++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F     + E   
Sbjct: 43  KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 102
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           R   + N+  +L+GNKSDL+ +R+V  EE +  A +  + ++ETSAK   NV++ F D  
Sbjct: 103 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162
Query: 224 KEI 226
           +EI
Sbjct: 163 REI 165

>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex Length = 178

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + +DG+++++ I DTAG E + +I  +Y+R   G LLV+ IT  E+F     + E   
Sbjct: 46  KKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQIL 105
Query: 165 --QHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
             +     + ++++GNKSDL+ RR+V  EE    A E G+ ++ETSAK   NV++ F D 
Sbjct: 106 RVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDL 165
Query: 223 AKEIYEK 229
            +EI  K
Sbjct: 166 MREIRTK 172

>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb In Its Active Conformation: Significance For Effector Protein Binding Length = 174

Iteration: 1
 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/127 (36%), Positives = 75/127 (59%), Gaps = 2/127 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + +DG+++++ I DTAG E + +I  +Y+R   G LLV+ IT  E+F     + E   
Sbjct: 42  KKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQIL 101
Query: 165 --QHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
             +     + ++++GNKSDL+ RR+V  EE    A E G+ ++ETSAK   NV++ F D 
Sbjct: 102 RVKAEEDKIPLLVVGNKSDLEERRQVPVEEARSKAEEWGVQYVETSAKTRANVDKVFFDL 161
Query: 223 AKEIYEK 229
            +EI  K
Sbjct: 162 MREIRTK 168

>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2 (Rras2) In The Gdp Bound State Length = 172

Iteration: 1
 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/129 (37%), Positives = 74/129 (57%), Gaps = 2/129 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           +   ID +  +L I DTAGQE F ++   Y R   G LLV+ +T R +F  +  +     
Sbjct: 44  KQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQIL 103
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           R        ++LIGNK+DLD +R+V +EEG+  AR+  + +ME SAK+  NV++AF +  
Sbjct: 104 RVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELV 163
Query: 224 KEIYEKIQE 232
           + I  K QE
Sbjct: 164 RVI-RKFQE 171

>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution Length = 182

Iteration: 1
 Score = 84.7 bits (208), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 46/138 (33%), Positives = 84/138 (60%), Gaps = 7/138 (5%)
Query: 101 EFGARMITIDGKQIK-LQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW 159
           +F  + +T+DG ++  +Q+WDTAGQE F+S+  ++YRGA   +LVYD+T   +F ++ +W
Sbjct: 44  DFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSW 103
Query: 160 LEDARQHSNSN----MVIMLIGNKSDL-DARREVKKEEGEVFAREHG-LVFMETSAKLAT 213
            ++   H+N N       +++GNK D  ++++ V ++  +  A+  G +    TSAK A 
Sbjct: 104 RDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAI 163
Query: 214 NVEEAFIDTAKEIYEKIQ 231
           NV+ AF + A+   ++ Q
Sbjct: 164 NVDTAFEEIARSALQQNQ 181

>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex Length = 167

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           + + +D +Q  L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   
Sbjct: 42  KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL 101
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDT 222
           R     ++ ++L+GNK DL+  R V KE+G+  AR+ +   F+E+SAK   NV E F D 
Sbjct: 102 RVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDL 161
Query: 223 AKEI 226
            ++I
Sbjct: 162 VRQI 165

>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1 Length = 169

Iteration: 1
 Score = 84.3 bits (207), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 70/124 (56%), Gaps = 2/124 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           + + +D +Q  L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   
Sbjct: 44  KQVEVDAQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL 103
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDT 222
           R     ++ ++L+GNK DL+  R V KE+G+  AR+ +   F+E+SAK   NV E F D 
Sbjct: 104 RVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDL 163
Query: 223 AKEI 226
            ++I
Sbjct: 164 VRQI 167

>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In Complex With The Active Rala Length = 175

Iteration: 1
 Score = 84.0 bits (206), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 74/123 (60%), Gaps = 1/123 (0%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           + + +DG+++++ I DTAG E + +I  +Y+R   G L V+ IT  E+F     + E   
Sbjct: 45  KKVVLDGEEVQIDILDTAGLEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 104
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           R   + N+  +L+GNKSDL+ +R+V  EE +  A +  + ++ETSAK   NV++ F D  
Sbjct: 105 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 164
Query: 224 KEI 226
           +EI
Sbjct: 165 REI 167

>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras- Binding-Domain Of C-Raf1 Kinase (Rafrbd) Length = 167

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           + + +D +Q  L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   
Sbjct: 42  KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL 101
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDT 222
           R     ++ ++L+GNK DL+  R V KE+G+  AR+     F+E+SAK   NV E F D 
Sbjct: 102 RVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161
Query: 223 AKEI 226
            ++I
Sbjct: 162 VRQI 165

>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e) Complexed With Gppnhp And The Ras-Binding-Domain Of Human C-Raf1, Residues 51-131 Length = 167

Iteration: 1
 Score = 83.2 bits (204), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 2/124 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           + + +D +Q  L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   
Sbjct: 42  KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL 101
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDT 222
           R     ++ ++L+GNK DL+  R V KE+G+  AR+     F+E+SAK   NV E F D 
Sbjct: 102 RVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161
Query: 223 AKEI 226
            ++I
Sbjct: 162 VRQI 165

>pdb|2CL0|X Chain X, Crystal Structure Analysis Of A Fluorescent Form Of H-Ras P21 In Complex With Gppnhp Length = 166

Iteration: 1
 Score = 80.5 bits (197), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 46/123 (37%), Positives = 71/123 (57%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNKSDL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKSDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|4Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 189

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|1CLU|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|1AGP|A Chain A, Three-Dimensional Structures And Properties Of A Transforming And A Nontransforming Gly-12 Mutant Of P21-H-Ras Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|3KKM|A Chain A, Crystal Structure Of H-Ras T35s In Complex With Gppnhp Length = 172

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 48  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 107
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 108 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 166
Query: 224 KEI 226
           +EI
Sbjct: 167 REI 169

>pdb|4EFM|A Chain A, Crystal Structure Of H-Ras G12v In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 47  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 107 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 165
Query: 224 KEI 226
           +EI
Sbjct: 166 REI 168

>pdb|4EFL|A Chain A, Crystal Structure Of H-Ras Wt In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 47  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 107 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 165
Query: 224 KEI 226
           +EI
Sbjct: 166 REI 168

>pdb|2C5L|A Chain A, Structure Of Plc Epsilon Ras Association Domain With Hras Length = 173

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 49  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 108
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 109 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 167
Query: 224 KEI 226
           +EI
Sbjct: 168 REI 170

>pdb|421P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|1JAH|A Chain A, H-Ras P21 Protein Mutant G12p, Complexed With Guanosine-5'- [beta,Gamma-Methylene] Triphosphate And Magnesium Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AGRTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|1IAQ|A Chain A, C-H-Ras P21 Protein Mutant With Thr 35 Replaced By Ser (T35s) Complexed With Guanosine-5'-[b,G-Imido] Triphosphate Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|3K9N|A Chain A, Allosteric Modulation Of H-Ras Gtpase Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|1WQ1|R Chain R, Ras-Rasgap Complex Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|3LO5|A Chain A, Crystal Structure Of The Dominant Negative S17n Mutant Of Ras Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|1RVD|A Chain A, H-Ras Complexed With Diaminobenzophenone-Beta,Gamma-Imido- Gtp Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|3DDC|A Chain A, Crystal Structure Of Nore1a In Complex With Ras Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|1LFD|B Chain B, Crystal Structure Of The Active Ras Protein Complexed With The Ras-interacting Domain Of Ralgds Length = 167

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|221P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|3V4F|A Chain A, H-Ras Peg 400CACL2, ORDERED OFF Length = 166

Iteration: 1
 Score = 79.0 bits (193), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDEYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|6Q21|A Chain A, Molecular Switch For Signal Transduction: Structural Differences Between Active And Inactive Forms Of Protooncogenic Ras Proteins Length = 171

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|2Q21|A Chain A, Crystal Structures At 2.2 Angstroms Resolution Of The Catalytic Domains Of Normal Ras Protein And An Oncogenic Mutant Complexed With Gsp Length = 171

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|4EPR|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 43  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S  V M L+GNKSDL +R  V  ++ +  AR +G+ F+ETSAK    V++AF    
Sbjct: 103 RVKDSEDVPMVLVGNKSDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
Query: 224 KEI 226
           +EI
Sbjct: 162 REI 164

>pdb|4EPX|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 43  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S  V M L+GNKSDL +R  V  ++ +  AR +G+ F+ETSAK    V++AF    
Sbjct: 103 RVKDSEDVPMVLVGNKSDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
Query: 224 KEI 226
           +EI
Sbjct: 162 REI 164

>pdb|4EPT|A Chain A, Discovery Of Small Molecules That Bind To K-Ras And Inhibit Sos- Mediated Activation Length = 170

Iteration: 1
 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 43  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S  V M L+GNKSDL +R  V  ++ +  AR +G+ F+ETSAK    V++AF    
Sbjct: 103 RVKDSEDVPMVLVGNKSDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
Query: 224 KEI 226
           +EI
Sbjct: 162 REI 164

>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive (Gdp-3'p- Bound) Form Length = 178

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/131 (35%), Positives = 68/131 (51%), Gaps = 4/131 (3%)
Query: 100 VEFGARMITIDGK-QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           ++F  R IT+ G   + LQIWD  GQ     +   Y  GA G LLVYDIT  ++F +L  
Sbjct: 41  LDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLED 100
Query: 159 W---LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNV 215
           W   ++   + S +  ++ L+GNK DL+  R +K E+   F +E+G      SAK   +V
Sbjct: 101 WYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSV 160
Query: 216 EEAFIDTAKEI 226
              F   A EI
Sbjct: 161 FLCFQKVAAEI 171

>pdb|3I3S|R Chain R, Crystal Structure Of H-Ras With Thr50 Replaced By Isoleucine Length = 166

Iteration: 1
 Score = 78.2 bits (191), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGEICLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|2QUZ|A Chain A, Crystal Structure Of The Activating H-Rask117r Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 77.8 bits (190), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GN+ DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNRCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|4DSO|A Chain A, Small-Molecule Ligands Bind To A Distinct Pocket In Ras And Inhibit Sos-Mediated Nucleotide Exchange Activity Length = 189

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 43  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S  V M L+GNK DL + R V  ++ +  AR +G+ F+ETSAK    V++AF    
Sbjct: 103 RVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161
Query: 224 KEI 226
           +EI
Sbjct: 162 REI 164

>pdb|1LF0|A Chain A, Crystal Structure Of Rasa59g In The Gtp-Bound Form Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DT GQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTGGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|2X1V|A Chain A, Crystal Structure Of The Activating H-Ras I163f Mutant In Costello Syndrome, Bound To Mg-Gdp Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 69/122 (56%), Gaps = 2/122 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KE 225
           +E
Sbjct: 161 RE 162

>pdb|521P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DT GQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTTGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|2RGB|A Chain A, Crystal Structure Of H-Rasq61k-Gppnhp Length = 166

Iteration: 1
 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 70/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAG+E + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGKEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|3CON|A Chain A, Crystal Structure Of The Human Nras Gtpase Bound With Gdp Length = 190

Iteration: 1
 Score = 77.0 bits (188), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 60  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK 119
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL   R V  ++    A+ +G+ F+ETSAK    VE+AF    
Sbjct: 120 RVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV 178
Query: 224 KEI 226
           +EI
Sbjct: 179 REI 181

>pdb|621P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 77.0 bits (188), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAG E + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|1NVV|Q Chain Q, Structural Evidence For Feedback Activation By Rasgtp Of The Ras-specific Nucleotide Exchange Factor Sos Length = 166

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE   ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEASAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|4EFN|A Chain A, Crystal Structure Of H-Ras Q61l In Complex With Gppnhp (State 1) Length = 171

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAG E + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 47  KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 106
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 107 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 165
Query: 224 KEI 226
           +EI
Sbjct: 166 REI 168

>pdb|1XCM|A Chain A, Crystal Structure Of The Gppnhp-Bound H-Ras G60a Mutant Length = 167

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTA QE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKXDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|1XJ0|A Chain A, Crystal Structure Of The Gdp-Bound Form Of The Rasg60a Mutant Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTA QE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAAQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKXDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|721P|A Chain A, Three-Dimensional Structures Of H-Ras P21 Mutants: Molecular Basis For Their Inability To Function As Signal Switch Molecules Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAG E + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGLEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|2RGC|A Chain A, Crystal Structure Of H-Rasq61v-Gppnhp Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAG E + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGVEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|1ZVQ|A Chain A, Structure Of The Q61g Mutant Of Ras In The Gdp-Bound Form Length = 166

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAG E + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|2RGA|A Chain A, Crystal Structure Of H-Rasq61i-Gppnhp Length = 166

Iteration: 1
 Score = 75.5 bits (184), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAG E + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGIEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|2BKU|A Chain A, Kap95p:rangtp Complex Length = 177

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
            IK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++  W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           I+L GNK D+  R+   K +  VF R+  L + + SAK   N E+ F+  A+++
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1ZW6|A Chain A, Crystal Structure Of The Gtp-Bound Form Of Rasq61g Length = 166

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 44/123 (35%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAG E + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETXLLDILDTAGGEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V M L+GNK DL A R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKCDL-AARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160
Query: 224 KEI 226
           +EI
Sbjct: 161 REI 163

>pdb|1RRP|A Chain A, Structure Of The Ran-Gppnhp-Ranbd1 Complex Length = 204

Iteration: 1
 Score = 75.1 bits (183), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
            IK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++  W  D  +    N+ 
Sbjct: 51  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 109
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           I+L GNK D+  R+   K +  VF R+  L + + SAK   N E+ F+  A+++
Sbjct: 110 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 161

>pdb|1WA5|A Chain A, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 176

Iteration: 1
 Score = 75.1 bits (183), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
            IK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++  W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           I+L GNK D+  R+   K +  VF R+  L + + SAK   N E+ F+  A+++
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1BYU|A Chain A, Canine Gdp-Ran Length = 216

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
            IK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++  W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           I+L GNK D+  R+   K +  VF R+  L + + SAK   N E+ F+  A+++
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3GFT|A Chain A, Human K-Ras In Complex With A Gtp Analogue Length = 187

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/123 (34%), Positives = 68/123 (55%), Gaps = 2/123 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAG E + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 60  KQVVIDGETCLLDILDTAGHEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 119
Query: 165 QHSNSNMVIM-LIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S  V M L+GNK DL + R V  ++ +  AR +G+ F+ETSAK    V++AF    
Sbjct: 120 RVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 178
Query: 224 KEI 226
           +EI
Sbjct: 179 REI 181

>pdb|1A2K|C Chain C, Gdpran-Ntf2 Complex Length = 216

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
            IK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++  W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           I+L GNK D+  R+   K +  VF R+  L + + SAK   N E+ F+  A+++
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3EA5|A Chain A, Kap95p Binding Induces The Switch Loops Of Rangdp To Adopt The Gtp- Bound Conformation: Implications For Nuclear Import Complex Assembly Dynamics Length = 216

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
            IK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++  W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           I+L GNK D+  R+   K +  VF R+  L + + SAK   N E+ F+  A+++
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG2|A Chain A, Canine Gdp-Ran R76e Mutant Length = 216

Iteration: 1
 Score = 74.7 bits (182), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
            IK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++  W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGQEKFGGLEDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           I+L GNK D+  R+   K +  VF R+  L + + SAK   N E+ F+  A+++
Sbjct: 117 IVLCGNKVDIKDRK--VKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3GJ0|A Chain A, Crystal Structure Of Human Rangdp Length = 221

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
            IK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++  W  D  +    N+ 
Sbjct: 63  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVR-VCENIP 121
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           I+L GNK D+  R+   K +  VF R+  L + + SAK   N E+ F+  A+++
Sbjct: 122 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|3GJ4|A Chain A, Crystal Structure Of Human Rangdp-Nup153znf3 Complex Length = 221

Iteration: 1
 Score = 74.7 bits (182), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
            IK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++  W  D  +    N+ 
Sbjct: 63  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 121
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           I+L GNK D+  R+   K +  VF R+  L + + SAK   N E+ F+  A+++
Sbjct: 122 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 173

>pdb|2ERX|A Chain A, Crystal Structure Of Diras2 In Complex With Gdp And Inorganic Phosphate Length = 172

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 44/117 (37%), Positives = 58/117 (49%), Gaps = 2/117 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           ++I+ D     LQI DT G   F ++ R         +LVY IT R++   L    E   
Sbjct: 42  QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQIC 101
Query: 165 QHSNS--NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           +      ++ IML+GNK D    REV+  E E  AR     FMETSAKL  NV+E F
Sbjct: 102 EIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELF 158

>pdb|1QBK|C Chain C, Structure Of The Karyopherin Beta2-ran Gppnhp Nuclear Transport Complex Length = 216

Iteration: 1
 Score = 73.9 bits (180), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
            IK  +WDTAGQE F  +   YY  A  A++ +D+T R T+ ++  W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIXFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           I+L GNK D+  R+   K +  VF R+  L + + SAK   N E+ F+  A+++
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|1QG4|A Chain A, Canine Gdp-Ran F72y Mutant Length = 216

Iteration: 1
 Score = 73.6 bits (179), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 64/114 (56%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
            IK  +WDTAGQE +  +   YY  A  A++++D+T R T+ ++  W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGQEKYGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           I+L GNK D+  R+   K +  VF R+  L + + SAK   N E+ F+  A+++
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|3NBY|C Chain C, Crystal Structure Of The Pki Nes-Crm1-Rangtp Nuclear Export Complex Length = 176

Iteration: 1
 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
            IK  +WDTAG E F  +   YY  A  A++++D+T R T+ ++  W  D  +    N+ 
Sbjct: 54  PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 112
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           I+L GNK D+  R+   K +  VF R+  L + + SAK   N E+ F+  A+++
Sbjct: 113 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 164

>pdb|3NC1|C Chain C, Crystal Structure Of The Crm1-Rangtp Complex Length = 182

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
            IK  +WDTAG E F  +   YY  A  A++++D+T R T+ ++  W  D  +    N+ 
Sbjct: 60  PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 118
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           I+L GNK D+  R+   K +  VF R+  L + + SAK   N E+ F+  A+++
Sbjct: 119 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|3RAN|A Chain A, Canine Gdp-Ran Q69l Mutant Length = 216

Iteration: 1
 Score = 72.0 bits (175), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
            IK  +WDTAG E F  +   YY  A  A++++D+T R T+ ++  W  D  +    N+ 
Sbjct: 58  PIKFNVWDTAGLEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-ENIP 116
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           I+L GNK D+  R+   K +  VF R+  L + + SAK   N E+ F+  A+++
Sbjct: 117 IVLCGNKVDIKDRKV--KAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 168

>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State Length = 196

Iteration: 1
 Score = 71.2 bits (173), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 70/124 (56%), Gaps = 9/124 (7%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITR-SYYRGAAGALLVYDITRRETFNH---LTTWLEDA 163
           TID + + ++I DTAGQE   +I R  + R   G +LVYDIT R +F     L   L++ 
Sbjct: 70  TIDDEVVSMEILDTAGQED--TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEI 127
Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDT 222
           ++    N+ ++L+GNK+DLD  R+V  EEGE  A E    F E SA     N+ E F + 
Sbjct: 128 KK--PKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYEL 185
Query: 223 AKEI 226
            +E+
Sbjct: 186 CREV 189

>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1 Length = 201

Iteration: 1
 Score = 70.5 bits (171), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 67/124 (54%), Gaps = 1/124 (0%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA 163
           ++++T+   +  L + DTAGQ+ +  +  S+  G  G +LVY +T   +F  + +  +  
Sbjct: 62  SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKL 121
Query: 164 RQ-HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
            + H  + + ++L+GNK+DL   REV+  EG+  A   G  FME+SA+     +  F   
Sbjct: 122 HEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKV 181
Query: 223 AKEI 226
            +EI
Sbjct: 182 IQEI 185

>pdb|3ICQ|B Chain B, Karyopherin Nuclear State Length = 171

Iteration: 1
 Score = 70.1 bits (170), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
           +IK  +WDTAG E F  +   YY  A  A++++D+T R T+ ++  W  D  +    N+ 
Sbjct: 52  EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIP 110
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           I+L GNK D+  R+   K +   F R+  L + + SAK   N E+ F+  A+++
Sbjct: 111 IVLCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 162

>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex Length = 172

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
           +IK  +WDTAG E F  +   YY  A  A++++D+T R T+ ++  W  D  +    N+ 
Sbjct: 53  EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIP 111
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           I+L GNK D+  R+   K +   F R+  L + + SAK   N E+ F+  A+++
Sbjct: 112 IVLCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 163

>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp) Length = 219

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 63/114 (55%), Gaps = 3/114 (2%)
Query: 113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV 172
           +IK  +WDTAG E F  +   YY  A  A++++D+T R T+ ++  W  D  +    N+ 
Sbjct: 60  EIKFDVWDTAGLEKFGGLRDGYYINAQCAIIMFDVTSRITYKNVPNWHRDLVRVC-ENIP 118
Query: 173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           I+L GNK D+  R+   K +   F R+  L + + SAK   N E+ F+  A+++
Sbjct: 119 IVLCGNKVDVKERKV--KAKTITFHRKKNLQYYDISAKSNYNFEKPFLWLARKL 170

>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From Encephalitozoon Cuniculi Bound To Gdp-Mg2+ Length = 218

Iteration: 1
 Score = 68.9 bits (167), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/114 (32%), Positives = 60/114 (52%)
Query: 111 GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN 170
           G  IK  +WDTAGQE    +   YY GA+GA+L +D+T R T  +L  W+++ +    + 
Sbjct: 58  GNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGNE 117
Query: 171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK 224
             I++  NK D+  R+++ K+      +     + E SAK A N    F+  A+
Sbjct: 118 APIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLAR 171

>pdb|3RAP|R Chain R, The Small G Protein Rap2 In A Non Catalytic Complex With Gtp Length = 167

Iteration: 1
 Score = 68.6 bits (166), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 1/127 (0%)
Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWL 160
           +F  + I +D     L+I DTAG E F S+   Y +   G +LVY +  +++F  +    
Sbjct: 38  DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMR 97
Query: 161 EDA-RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           +   R      + ++L+GNK DL++ REV   EG   A E G  FMETSAK  T V+E F
Sbjct: 98  DQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF 157
Query: 220 IDTAKEI 226
            +  +++
Sbjct: 158 AEIVRQM 164

>pdb|1TX4|B Chain B, RhoRHOGAPGDP(DOT)ALF4 COMPLEX Length = 177

Iteration: 1
 Score = 67.8 bits (164), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH 166
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 44  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 103
Query: 167 SNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLAT 213
              N+ I+L+GNK DL      RRE        VK EEG   A   G   +ME SAK   
Sbjct: 104 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 163
Query: 214 NVEEAF 219
            V E F
Sbjct: 164 GVREVF 169

>pdb|1XCG|B Chain B, Crystal Structure Of Human Rhoa In Complex With DhPH Fragment Of Pdzrhogef Length = 178

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  ++   W  + + 
Sbjct: 44  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 102
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
           H   N+ I+L+GNK DL      RRE        VK EEG   A   G   +ME SAK  
Sbjct: 103 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 162
Query: 213 TNVEEAF 219
             V E F
Sbjct: 163 DGVREVF 169

>pdb|3MSX|A Chain A, Crystal Structure Of Rhoa.Gdp.Mgf3 In Complex With Gap Domain Of Arhgap20 Length = 180

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  ++   W  + + 
Sbjct: 46  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 104
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
           H   N+ I+L+GNK DL      RRE        VK EEG   A   G   +ME SAK  
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
Query: 213 TNVEEAF 219
             V E F
Sbjct: 165 DGVREVF 171

>pdb|1CXZ|A Chain A, Crystal Structure Of Human Rhoa Complexed With The Effector Domain Of The Protein Kinase PknPRK1 Length = 182

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  ++   W  + + 
Sbjct: 47  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 105
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
           H   N+ I+L+GNK DL      RRE        VK EEG   A   G   +ME SAK  
Sbjct: 106 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 165
Query: 213 TNVEEAF 219
             V E F
Sbjct: 166 DGVREVF 172

>pdb|3KZ1|E Chain E, Crystal Structure Of The Complex Of Pdz-Rhogef DhPH DOMAINS WITH GTP- Gamma-S Activated Rhoa Length = 182

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH 166
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 47  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 106
Query: 167 SNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLAT 213
              N+ I+L+GNK DL      RRE        VK EEG   A   G   +ME SAK   
Sbjct: 107 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 166
Query: 214 NVEEAF 219
            V E F
Sbjct: 167 GVREVF 172

>pdb|3LW8|A Chain A, Shigella Ipgb2 In Complex With Human Rhoa, Gdp And Mg2+ (Complex A) Length = 185

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH 166
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 50  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 109
Query: 167 SNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLAT 213
              N+ I+L+GNK DL      RRE        VK EEG   A   G   +ME SAK   
Sbjct: 110 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 169
Query: 214 NVEEAF 219
            V E F
Sbjct: 170 GVREVF 175

>pdb|1S1C|A Chain A, Crystal Structure Of The Complex Between The Human Rhoa And Rho-Binding Domain Of Human Rocki Length = 183

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  ++   W  + + 
Sbjct: 48  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 106
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
           H   N+ I+L+GNK DL      RRE        VK EEG   A   G   +ME SAK  
Sbjct: 107 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
Query: 213 TNVEEAF 219
             V E F
Sbjct: 167 DGVREVF 173

>pdb|3TVD|A Chain A, Crystal Structure Of Mouse Rhoa-Gtp Complex Length = 193

Iteration: 1
 Score = 67.4 bits (163), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  ++   W  + + 
Sbjct: 46  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 104
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
           H   N+ I+L+GNK DL      RRE        VK EEG   A   G   +ME SAK  
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
Query: 213 TNVEEAF 219
             V E F
Sbjct: 165 DGVREVF 171

>pdb|1OW3|B Chain B, Crystal Structure Of Rhoa.Gdp.Mgf3-In Complex With Rhogap Length = 193

Iteration: 1
 Score = 67.4 bits (163), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  ++   W  + + 
Sbjct: 46  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 104
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
           H   N+ I+L+GNK DL      RRE        VK EEG   A   G   +ME SAK  
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
Query: 213 TNVEEAF 219
             V E F
Sbjct: 165 DGVREVF 171

>pdb|1X86|B Chain B, Crystal Structure Of The DhPH DOMAINS OF LEUKEMIA-Associated Rhogef In Complex With Rhoa Length = 196

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 43/126 (34%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH 166
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 49  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 108
Query: 167 SNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLAT 213
              N+ I+L+GNK DL      RRE        VK EEG   A   G   +ME SAK   
Sbjct: 109 FCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKD 168
Query: 214 NVEEAF 219
            V E F
Sbjct: 169 GVREVF 174

>pdb|1CC0|A Chain A, Crystal Structure Of The Rhoa.Gdp-Rhogdi Complex Length = 190

Iteration: 1
 Score = 67.0 bits (162), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  ++   W  + + 
Sbjct: 46  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 104
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
           H   N+ I+L+GNK DL      RRE        VK EEG   A   G   +ME SAK  
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 164
Query: 213 TNVEEAF 219
             V E F
Sbjct: 165 DGVREVF 171

>pdb|1LB1|B Chain B, Crystal Structure Of The Dbl And Pleckstrin Homology Domains Of Dbs In Complex With Rhoa Length = 192

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  ++   W  + + 
Sbjct: 48  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 106
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
           H   N+ I+L+GNK DL      RRE        VK EEG   A   G   +ME SAK  
Sbjct: 107 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
Query: 213 TNVEEAF 219
             V E F
Sbjct: 167 DGVREVF 173

>pdb|4F38|A Chain A, Crystal Structure Of Geranylgeranylated Rhoa In Complex With Rhogdi In Its Active Gppnhp-Bound Form Length = 195

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  ++   W  + + 
Sbjct: 48  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 106
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
           H   N+ I+L+GNK DL      RRE        VK EEG   A   G   +ME SAK  
Sbjct: 107 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 166
Query: 213 TNVEEAF 219
             V E F
Sbjct: 167 DGVREVF 173

>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp (Type 1) Length = 183

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE-DARQHS 167
           ID +   L + DTAGQE F ++   Y R   G L+VY +T + +F H+  + +   R   
Sbjct: 61  IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 120
Query: 168 NSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK-LATNVEEAFIDTAKEI 226
             +  ++L+ NK DL   R+V +++G+  A ++ + ++ETSAK    NV++ F D  + I
Sbjct: 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
Query: 227 YEK 229
            ++
Sbjct: 181 RQQ 183

>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp Length = 178

Iteration: 1
 Score = 67.0 bits (162), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE-DARQHS 167
           ID +   L + DTAGQE F ++   Y R   G L+VY +T + +F H+  + +   R   
Sbjct: 56  IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 115
Query: 168 NSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK-LATNVEEAFIDTAKEI 226
             +  ++L+ NK DL   R+V +++G+  A ++ + ++ETSAK    NV++ F D  + I
Sbjct: 116 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 175
Query: 227 YEK 229
            ++
Sbjct: 176 RQQ 178

>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp Length = 183

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE-DARQHS 167
           ID +   L + DTAGQE F ++   Y R   G L+VY +T + +F H+  + +   R   
Sbjct: 61  IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 120
Query: 168 NSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK-LATNVEEAFIDTAKEI 226
             +  ++L+ NK DL   R+V +++G+  A ++ + ++ETSAK    NV++ F D  + I
Sbjct: 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
Query: 227 YEK 229
            ++
Sbjct: 181 RQQ 183

>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP Length = 183

Iteration: 1
 Score = 67.0 bits (162), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 39/123 (31%), Positives = 69/123 (56%), Gaps = 2/123 (1%)
Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE-DARQHS 167
           ID +   L + DTAGQE F ++   Y R   G L+VY +T + +F H+  + +   R   
Sbjct: 61  IDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKD 120
Query: 168 NSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK-LATNVEEAFIDTAKEI 226
             +  ++L+ NK DL   R+V +++G+  A ++ + ++ETSAK    NV++ F D  + I
Sbjct: 121 RESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVI 180
Query: 227 YEK 229
            ++
Sbjct: 181 RQQ 183

>pdb|1KMQ|A Chain A, Crystal Structure Of A Constitutively Activated Rhoa Mutant (Q63l) Length = 184

Iteration: 1
 Score = 64.3 bits (155), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/127 (33%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
           I +DGKQ++L +WDTAG E +  +    Y      L+ + I   ++  ++   W  + + 
Sbjct: 49  IEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 107
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLA 212
           H   N+ I+L+GNK DL      RRE        VK EEG   A   G   +ME SAK  
Sbjct: 108 HFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTK 167
Query: 213 TNVEEAF 219
             V E F
Sbjct: 168 DGVREVF 174

>pdb|1Z2C|A Chain A, Crystal Structure Of Mdia1 Gbd-Fh3 In Complex With Rhoc- Gmppnp Length = 193

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  ++   W  + + 
Sbjct: 46  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 104
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFA-REHGLVFMETSAKLA 212
           H   N+ I+L+GNK DL      RRE        V+ EEG   A R     ++E SAK  
Sbjct: 105 HFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTK 164
Query: 213 TNVEEAF 219
             V E F
Sbjct: 165 EGVREVF 171

>pdb|2GCN|A Chain A, Crystal Structure Of The Human Rhoc-Gdp Complex Length = 201

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 62/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  ++   W  + + 
Sbjct: 66  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 124
Query: 166 HSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFA-REHGLVFMETSAKLA 212
           H   N+ I+L+GNK DL      RRE        V+ EEG   A R     ++E SAK  
Sbjct: 125 HFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTK 184
Query: 213 TNVEEAF 219
             V E F
Sbjct: 185 EGVREVF 191

>pdb|2GCO|A Chain A, Crystal Structure Of The Human Rhoc-gppnhp Complex Length = 201

Iteration: 1
 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH 166
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  ++        +H
Sbjct: 66  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKH 125
Query: 167 SNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFA-REHGLVFMETSAKLAT 213
              N+ I+L+GNK DL      RRE        V+ EEG   A R     ++E SAK   
Sbjct: 126 FXPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKE 185
Query: 214 NVEEAF 219
            V E F
Sbjct: 186 GVREVF 191

>pdb|2GF0|A Chain A, The Crystal Structure Of The Human Diras1 Gtpase In The Inactive Gdp Bound State Length = 199

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 39/117 (33%), Positives = 61/117 (52%), Gaps = 3/117 (2%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           ++I+ D     LQI DT G   F ++ R         +LV+ +T +++   L    +   
Sbjct: 47  QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIV 106
Query: 165 QHSNS--NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           Q   S  ++ +ML+GNK D + +REV   E +  A+E    FMETSAK+  NV+E F
Sbjct: 107 QIKGSVEDIPVMLVGNKCD-ETQREVDTREAQAVAQEWKCAFMETSAKMNYNVKELF 162

>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp Length = 177

Iteration: 1
 Score = 63.9 bits (154), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW---LE 161
           ++IT++G++  LQ+ DTAGQ+ +    ++Y     G +LVY +T  ++F  +      L 
Sbjct: 45  KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLL 104
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK 210
           D        + IML+GNK DL   R +  EEG+  A      F+E+SAK
Sbjct: 105 DMV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 151

>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp Length = 169

Iteration: 1
 Score = 63.9 bits (154), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW---LE 161
           ++IT++G++  LQ+ DTAGQ+ +    ++Y     G +LVY +T  ++F  +      L 
Sbjct: 40  KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLL 99
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK 210
           D        + IML+GNK DL   R +  EEG+  A      F+E+SAK
Sbjct: 100 DMV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 146

>pdb|2J1L|A Chain A, Crystal Structure Of Human Rho-Related Gtp-Binding Protein Rhod Length = 214

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 38/131 (29%), Positives = 64/131 (48%), Gaps = 15/131 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + + GK + L IWDTAGQ+ +  +   +Y  A+  LL +D+T   +F+++   W  +   
Sbjct: 75  LQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEV-N 133
Query: 166 HSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLA 212
           H    + I+++G K+DL            +    V    G+  AR  G V ++E SA+L 
Sbjct: 134 HFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLH 193
Query: 213 TNVEEAFIDTA 223
            NV   F + A
Sbjct: 194 DNVHAVFQEAA 204

>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound Forms Length = 167

Iteration: 1
 Score = 63.5 bits (153), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW---LE 161
           ++IT++G++  LQ+ DTAGQ+ +    ++Y     G +LVY +T  ++F  +      L 
Sbjct: 43  KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLL 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK 210
           D        + IML+GNK DL   R +  EEG+  A      F+E+SAK
Sbjct: 103 DMV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 149

>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex With Pde6d Length = 181

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 5/109 (4%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTW---LE 161
           ++IT++G++  LQ+ DTAGQ+ +    ++Y     G +LVY +T  ++F  +      L 
Sbjct: 45  KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLL 104
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK 210
           D        + IML+GNK DL   R +  EEG+  A      F+E+SAK
Sbjct: 105 DMV--GKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAK 151

>pdb|2J0V|A Chain A, The Crystal Structure Of Arabidopsis Thaliana Rac7-Rop9: The First Ras Superfamily Gtpase From The Plant Kingdom Length = 212

Iteration: 1
 Score = 61.6 bits (148), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 12/130 (9%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQ 165
           + +DG+ + L +WDTAGQE +  +    YRGA   +L + +  + ++ N L  W+ + R+
Sbjct: 50  VAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRR 109
Query: 166 HSNSNMVIMLIGNKSDL--------DARREVKKEEGEVFAREHG-LVFMETSAKLATNVE 216
            +  N+ I+L+G K DL        D    +   +GE   ++ G   ++E S+K   NV+
Sbjct: 110 FA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVK 168
Query: 217 EAFIDTAKEI 226
             F DTA ++
Sbjct: 169 AVF-DTAIKV 177

>pdb|1DPF|A Chain A, Crystal Structure Of A Mg-Free Form Of Rhoa Complexed With Gdp Length = 180

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
           I +DGKQ++L +WDTAGQE +       Y      L+ + I   ++  ++   W  + + 
Sbjct: 46  IEVDGKQVELALWDTAGQEDYDRARPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVK- 104
Query: 166 HSNSNMVIMLIGNKSDL-----DAR-------REVKKEEGEVFAREHGLV-FMETSAKLA 212
           H   N+ I+L+GNK DL      AR         VK  EG   A   G   +ME SAK  
Sbjct: 105 HFCPNVPIILVGNKKDLRNDEHTARELAKMKQEPVKPAEGRDMANRIGAFGYMECSAKTK 164
Query: 213 TNVEEAF 219
             V E F
Sbjct: 165 DGVREVF 171

>pdb|2NZJ|A Chain A, The Crystal Structure Of Rem1 In Complex With Gdp Length = 175

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/118 (35%), Positives = 63/118 (53%), Gaps = 3/118 (2%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAF-RSITR-SYYRGAAGALLVYDITRRETFNHLTTW-LE 161
           R +T+DG+   L + DT   E   +S ++ S  +G +  ++VY I  R +F   +   ++
Sbjct: 43  RTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQ 102
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
             R H   ++ I+L+GNK+DL   REV  EEG   A      F+ETSA L  NV E F
Sbjct: 103 LRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELF 160

>pdb|3Q72|A Chain A, Crystal Structure Of Rad G-Domain-Gtp Analog Complex Length = 166

Iteration: 1
 Score = 60.8 bits (146), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF---NHLTTWLE 161
           R I +DG++  L ++D   Q+  R +           ++VY +T + +F   + L   L 
Sbjct: 40  RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 99
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
            ARQ    ++ I+L+GNKSDL   REV  +EG   A      F+ETSA L  NV+  F  
Sbjct: 100 RARQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEG 157
Query: 222 TAKEI 226
             ++I
Sbjct: 158 VVRQI 162

>pdb|2DPX|A Chain A, Crystal Structure Of Human Rad Gtpase Length = 174

Iteration: 1
 Score = 60.5 bits (145), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF---NHLTTWLE 161
           R I +DG++  L ++D   Q+  R +           ++VY +T + +F   + L   L 
Sbjct: 45  RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 104
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
            ARQ    ++ I+L+GNKSDL   REV  +EG   A      F+ETSA L  NV+  F  
Sbjct: 105 RARQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEG 162
Query: 222 TAKEI 226
             ++I
Sbjct: 163 VVRQI 167

>pdb|2GJS|A Chain A, The Crystal Structure Of Human Rrad In Complex With Gdp Length = 176

Iteration: 1
 Score = 60.5 bits (145), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 5/125 (4%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF---NHLTTWLE 161
           R I +DG++  L ++D   Q+  R +           ++VY +T + +F   + L   L 
Sbjct: 45  RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 104
Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
            ARQ    ++ I+L+GNKSDL   REV  +EG   A      F+ETSA L  NV+  F  
Sbjct: 105 RARQ--TDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEG 162
Query: 222 TAKEI 226
             ++I
Sbjct: 163 VVRQI 167

>pdb|2WBL|C Chain C, Three-Dimensional Structure Of A Binary Rop-Prone Complex Length = 180

Iteration: 1
 Score = 59.3 bits (142), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 14/129 (10%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DG  + L +WDTAGQE +  +    YRGA   LL + +  + ++ ++   WL + + 
Sbjct: 47  VVVDGSTVNLGLWDTAGQEDYNRLRPLSYRGADVFLLAFSLISKASYENIHKKWLPELK- 105
Query: 166 HSNSNMVIMLIGNKSDLDARREVKKE----------EGEVFAREHGLV-FMETSAKLATN 214
           H    + I+L+G K DL   ++  K+          +GE   +  G V ++E S+K   N
Sbjct: 106 HYAPGIPIVLVGTKLDLRDDKQFLKDHPGAASITTAQGEELRKMIGAVRYLECSSKTQQN 165
Query: 215 VEEAFIDTA 223
           V+  F DTA
Sbjct: 166 VKAVF-DTA 173

>pdb|2FV8|A Chain A, The Crystal Structure Of Rhob In The Gdp-Bound State Length = 207

Iteration: 1
 Score = 58.9 bits (141), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
           I +DGKQ++L +WDTAGQE +  +    Y      L+ + +   ++  ++   W+ + + 
Sbjct: 66  IEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK- 124
Query: 166 HSNSNMVIMLIGNKSDLDA------------RREVKKEEGEVFA-REHGLVFMETSAKLA 212
           H   N+ I+L+ NK DL +            +  V+ ++G   A R     ++E SAK  
Sbjct: 125 HFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTK 184
Query: 213 TNVEEAF 219
             V E F
Sbjct: 185 EGVREVF 191

>pdb|2Q3H|A Chain A, The Crystal Structure Of Rhoua In The Gdp-bound State Length = 201

Iteration: 1
 Score = 58.2 bits (139), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 64/128 (50%), Gaps = 15/128 (11%)
Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDAR 164
           ++++DG+ ++LQ+ DTAGQ+ F  +    Y      LL + +    +F +++  W+ + R
Sbjct: 60  VVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR 119
Query: 165 QHSNSNMVIMLIGNKSDL--DAR----------REVKKEEGEVFARE-HGLVFMETSAKL 211
            H      I+L+G +SDL  D +          + V +E  ++ A E     ++E SA  
Sbjct: 120 CHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALT 178
Query: 212 ATNVEEAF 219
             N++E F
Sbjct: 179 QKNLKEVF 186

>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas Length = 208

Iteration: 1
 Score = 57.0 bits (136), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 36/142 (25%), Positives = 69/142 (48%), Gaps = 7/142 (4%)
Query: 100 VEFGARMITIDGKQIKLQIW--DTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT 157
           VE     +TI    + ++++  DTAG + ++     Y+ G   A+LV+D++  E+F    
Sbjct: 57  VEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCK 116
Query: 158 TW---LEDARQHSNSNMVIMLIGNKSDLDARR-EVKKEEGEVFAREHGLVFMETSA-KLA 212
            W   L+ AR      +  +L+ NK+DL  +R +V+ +  + +A  + L F + SA    
Sbjct: 117 AWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPG 176
Query: 213 TNVEEAFIDTAKEIYEKIQEGV 234
            + +  F+  A   Y   ++ V
Sbjct: 177 KDADAPFLSIATTFYRNYEDKV 198

>pdb|2NTY|C Chain C, Rop4-Gdp-Prone8 Length = 180

Iteration: 1
 Score = 56.6 bits (135), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 61/125 (48%), Gaps = 13/125 (10%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQ 165
           + +DG  + L +WDTAGQE +  +    YRGA   +L + +  + ++ N    W+ + R 
Sbjct: 47  VVVDGNTVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVAKKWIPELR- 105
Query: 166 HSNSNMVIMLIGNKSDLDARRE----------VKKEEGEVFAREHG-LVFMETSAKLATN 214
           H    + I+L+G K DL   ++          +   +GE   +  G  +++E S+K   N
Sbjct: 106 HYAPGVPIILVGTKLDLRDDKQFFIDHPGAVPITTNQGEELKKLIGSPIYIECSSKTQQN 165
Query: 215 VEEAF 219
           V+  F
Sbjct: 166 VKAVF 170

>pdb|1MH1|A Chain A, Small G-Protein Length = 186

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y     +L+ + +    +F ++   W  + R 
Sbjct: 46  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 105
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA
Sbjct: 106 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 161

>pdb|1G4U|R Chain R, Crystal Structure Of The Salmonella Tyrosine Phosphatase And Gtpase Activating Protein Sptp Bound To Rac1 Length = 184

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y     +L+ + +    +F ++   W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2H7V|A Chain A, Co-crystal Structure Of Ypka-rac1 Length = 188

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y     +L+ + +    +F ++   W  + R 
Sbjct: 48  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 107
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA
Sbjct: 108 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 163

>pdb|2G3Y|A Chain A, Crystal Structure Of The Human Small Gtpase Gem Length = 211

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 105 RMITIDGKQ---IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF---NHLTT 158
           R + +DG+    I L +W+  G+  +  +     +     L+VY IT R +F   + L  
Sbjct: 78  RTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI 135
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
            L  ARQ    ++ I+L+GNKSDL   REV   EG   A      F+ETSA +  NV+E 
Sbjct: 136 QLRRARQ--TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 193
Query: 219 F 219
           F
Sbjct: 194 F 194

>pdb|1HH4|A Chain A, Rac1-Rhogdi Complex Involved In Nadph Oxidase Activation Length = 192

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y     +L+ + +    +F ++   W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2HT6|A Chain A, Crystal Structure Of Human Gem G-Domain Bound To Gdp Length = 174

Iteration: 1
 Score = 55.1 bits (131), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 105 RMITIDGKQ---IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF---NHLTT 158
           R + +DG+    I L +W+  G+  +  +     +     L+VY IT R +F   + L  
Sbjct: 47  RTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI 104
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
            L  ARQ    ++ I+L+GNKSDL   REV   EG   A      F+ETSA +  NV+E 
Sbjct: 105 QLRRARQ--TEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKEL 162
Query: 219 F 219
           F
Sbjct: 163 F 163

>pdb|3REF|B Chain B, Crystal Structure Of Ehrho1 Bound To Gdp And Magnesium Length = 194

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 15/125 (12%)
Query: 116 LQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIML 175
           L +WDTAGQE +  +    Y  +   LL + +  R +F++++T  E   +H       +L
Sbjct: 73  LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVL 132
Query: 176 IGNKSDL--DARREVKKEEGEVFAREHGLV-FMETS--AKLATNVEEAFIDTAKEIYEKI 230
           +G K DL  D   +V K+EG+   ++ G V ++E S  AK+  N          E++EK 
Sbjct: 133 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN----------EVFEKS 182
Query: 231 QEGVF 235
            + +F
Sbjct: 183 VDCIF 187

>pdb|4DVG|A Chain A, Crystal Structure Of E. Histolytica Formin1 Bound To Ehrho1-Gtpgammas Length = 188

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/125 (29%), Positives = 63/125 (50%), Gaps = 15/125 (12%)
Query: 116 LQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIML 175
           L +WDTAGQE +  +    Y  +   LL + +  R +F++++T  E   +H       +L
Sbjct: 72  LHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVL 131
Query: 176 IGNKSDL--DARREVKKEEGEVFAREHGLV-FMETS--AKLATNVEEAFIDTAKEIYEKI 230
           +G K DL  D   +V K+EG+   ++ G V ++E S  AK+  N          E++EK 
Sbjct: 132 VGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLN----------EVFEKS 181
Query: 231 QEGVF 235
            + +F
Sbjct: 182 VDCIF 186

>pdb|2CJW|B Chain B, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 105 RMITIDGKQ---IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF---NHLTT 158
           R + +DG+    I L +W+  G+  +  +     +     L+VY IT R +F   + L  
Sbjct: 47  RTLMVDGESATIILLDMWENKGENEW--LHDHXMQVGDAYLIVYSITDRASFEKASELRI 104
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
            L  ARQ    ++ I+L+GNKSDL   REV   EG   A      F+ETSA +  NV+E 
Sbjct: 105 QLRRARQ--TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDCKFIETSAAVQHNVKEL 162
Query: 219 F 219
           F
Sbjct: 163 F 163

>pdb|2CJW|A Chain A, Crystal Structure Of The Small Gtpase Gem (Gemdndcam) In Complex To Mg.Gdp Length = 192

Iteration: 1
 Score = 53.9 bits (128), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 61/121 (50%), Gaps = 10/121 (8%)
Query: 105 RMITIDGKQ---IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF---NHLTT 158
           R + +DG+    I L +W+  G+  +  +     +     L+VY IT R +F   + L  
Sbjct: 47  RTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRI 104
Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
            L  ARQ    ++ I+L+GNKSDL   REV   EG   A      F+ETSA +  NV+E 
Sbjct: 105 QLRRARQ--TEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKEL 162
Query: 219 F 219
           F
Sbjct: 163 F 163

>pdb|2VRW|A Chain A, Critical Structural Role For The Ph And C1 Domains Of The Vav1 Exchange Factor Length = 184

Iteration: 1
 Score = 53.9 bits (128), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2WKR|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450m Mutant Length = 332

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAG E +  +    Y      L+ + +    +F+H+   W  + R 
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSAKLA 212
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA   
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 213 TNVEEAF 219
             ++  F
Sbjct: 315 RGLKTVF 321

>pdb|2WKP|A Chain A, Structure Of A Photoactivatable Rac1 Containing Lov2 Wildtype Length = 332

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAG E +  +    Y      L+ + +    +F+H+   W  + R 
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSAKLA 212
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA   
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 314
Query: 213 TNVEEAF 219
             ++  F
Sbjct: 315 RGLKTVF 321

>pdb|2WKQ|A Chain A, Structure Of A Photoactivatable Rac1 Containing The Lov2 C450a Mutant Length = 332

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAG E +  +    Y      L+ + +    +F+H+   W  + R 
Sbjct: 196 VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRH 255
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA
Sbjct: 256 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 311

>pdb|1HE1|C Chain C, Crystal Structure Of The Complex Between The Gap Domain Of The Pseudomonas Aeruginosa Exos Toxin And Human Rac Length = 176

Iteration: 1
 Score = 53.5 bits (127), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3SUA|A Chain A, Crystal Structure Of The Intracellular Domain Of Plexin-B1 In Complex With Rac1 Length = 184

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1I4D|D Chain D, Crystal Structure Analysis Of Rac1-Gdp Complexed With Arfaptin (P21) Length = 192

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2FJU|A Chain A, Activated Rac1 Bound To Its Effector Phospholipase C Beta 2 Length = 178

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1FOE|B Chain B, Crystal Structure Of Rac1 In Complex With The Guanine Nucleotide Exchange Region Of Tiam1 Length = 177

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|2YIN|C Chain C, Structure Of The Complex Between Dock2 And Rac1. Length = 196

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 63  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 122
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA
Sbjct: 123 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 178

>pdb|4GZM|A Chain A, Crystal Structure Of Rac1 F28l Mutant Length = 204

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 71  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSAKLA 212
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA   
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 213 TNVEEAF 219
             ++  F
Sbjct: 190 RGLKTVF 196

>pdb|3B13|B Chain B, Crystal Structure Of The Dhr-2 Domain Of Dock2 In Complex With Rac1 (T17n Mutant) Length = 184

Iteration: 1
 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 51  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 110
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA
Sbjct: 111 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 166

>pdb|3TH5|A Chain A, Crystal Structure Of Wild-Type Rac1 Length = 204

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 71  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSAKLA 212
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA   
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 213 TNVEEAF 219
             ++  F
Sbjct: 190 RGLKTVF 196

>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant Length = 187

Iteration: 1
 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 54  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 113
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA
Sbjct: 114 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 169

>pdb|3CBQ|A Chain A, Crystal Structure Of The Human Rem2 Gtpase With Bound Gdp Length = 195

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGA-LLVYDITRRETFNHLT-TWLED 162
           R I +D +++ L ++D   Q       R +      A L+V+ +T R +F+ +  T L  
Sbjct: 63  RRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL 122
Query: 163 ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
                + ++ ++L+GNKSDL   REV  EEG   A       +ETSA L  N  E F   
Sbjct: 123 RAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 182
Query: 223 AKEI 226
            ++I
Sbjct: 183 VRQI 186

>pdb|3A58|B Chain B, Crystal Structure Of Sec3p - Rho1p Complex From Saccharomyces Cerevisiae Length = 188

Iteration: 1
 Score = 52.0 bits (123), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 61/127 (48%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
           + +DG++++L +WDTAGQE +  +    Y  +   L+ + I   ++  ++   W+ +   
Sbjct: 51  VEVDGRRVELALWDTAGQEDYDRLRPLSYPDSNVVLICFSIDLPDSLENVQEKWIAEVL- 109
Query: 166 HSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLA 212
           H    + I+L+G K DL            + ++ V  +EG+  A + G   + E SAK  
Sbjct: 110 HFCQGVPIILVGCKVDLRNDPQTIEQLRQEGQQPVTSQEGQSVADQIGATGYYECSAKTG 169
Query: 213 TNVEEAF 219
             V E F
Sbjct: 170 YGVREVF 176

>pdb|2C2H|A Chain A, Crystal Structure Of The Human Rac3 In Complex With Gdp Length = 192

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKLA 212
           H   +  I+L+G K DL   ++            +   +G   ARE G V ++E SA   
Sbjct: 104 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 162
Query: 213 TNVEEAF 219
             ++  F
Sbjct: 163 RGLKTVF 169

>pdb|2IC5|A Chain A, Crystal Structure Of Human Rac3 Grown In The Presence Of Gpp(Nh)p. Length = 180

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 45  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 104
Query: 166 HSNSNMVIMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKLA 212
           H   +  I+L+G K DL   ++            +   +G   ARE G V ++E SA   
Sbjct: 105 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 163
Query: 213 TNVEEAF 219
             ++  F
Sbjct: 164 RGLKTVF 170

>pdb|2G0N|A Chain A, The Crystal Structure Of The Human Rac3 In Complex With Gdp And Chloride Length = 179

Iteration: 1
 Score = 51.6 bits (122), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 33/127 (25%), Positives = 57/127 (44%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAGQE +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 45  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 104
Query: 166 HSNSNMVIMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKLA 212
           H   +  I+L+G K DL   ++            +   +G   ARE G V ++E SA   
Sbjct: 105 HC-PHTPILLVGTKLDLRDDKDTIERLRDKKLAPITYPQGLAMAREIGSVKYLECSALTQ 163
Query: 213 TNVEEAF 219
             ++  F
Sbjct: 164 RGLKTVF 170

>pdb|3C5C|A Chain A, Crystal Structure Of Human Ras-Like, Family 12 Protein In Complex With Gdp Length = 187

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH- 166
           T+D + + L++ DTA  +  R+  R Y   A   L+VY +  R++F+  +++LE    H 
Sbjct: 63  TVDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHA 121
Query: 167 --SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL-ATNVEEAFIDTA 223
             +  ++  +L+GNK D+   R+V K EG   A   G +F E SA L   +V+  F +  
Sbjct: 122 KETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAV 181
Query: 224 KE 225
           +E
Sbjct: 182 RE 183

>pdb|3BWD|D Chain D, Crystal Structure Of The Plant Rho Protein Rop5 Length = 182

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 17/136 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQ 165
           + ++G  + L +WDTAGQE +  +    YRGA   +L + +  + ++ +++  W+ + + 
Sbjct: 49  VVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK- 107
Query: 166 HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETS-----AKLATNVEEAFI 220
           H    + I+L+G K DL       +++ + F    G V + T       KL      A+I
Sbjct: 108 HYAPGVPIVLVGTKLDL-------RDDKQFFIDHPGAVPITTVQGEELKKLIG--APAYI 158
Query: 221 DTAKEIYEKIQEGVFD 236
           + + +  E ++ GVFD
Sbjct: 159 ECSSKSQENVK-GVFD 173

>pdb|1E96|A Chain A, Structure Of The RacP67PHOX COMPLEX Length = 192

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAG E +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|1I4T|D Chain D, Crystal Structure Analysis Of Rac1-Gmppnp In Complex With Arfaptin Length = 192

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQ 165
           + +DGK + L +WDTAG E +  +    Y      L+ + +    +F N    W  + R 
Sbjct: 44  VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA
Sbjct: 104 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 159

>pdb|3Q85|A Chain A, Crystal Structure Of Rem2 G-Domain -Gtp Analog Complex Length = 169

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQ-EAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
           R I +D +++ L ++D   Q +A   +     +     L+V+ +T R +F+ +  T L  
Sbjct: 42  RRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL 101
Query: 163 ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
                + ++ ++L+GNKSDL   REV  EEG   A       +ETSA L  N  E F   
Sbjct: 102 RAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 161
Query: 223 AKEI 226
            ++I
Sbjct: 162 VRQI 165

>pdb|3RYT|C Chain C, The Plexin A1 Intracellular Region In Complex With Rac1 Length = 180

Iteration: 1
 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 15/117 (12%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAG E +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 47  VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 106
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSA 209
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA
Sbjct: 107 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSA 162

>pdb|4AII|A Chain A, Crystal Structure Of The Rat Rem2 Gtpase - G Domain Bound To Gdp Length = 180

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 61/124 (49%), Gaps = 2/124 (1%)
Query: 105 RMITIDGKQIKLQIWDTAGQ-EAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
           R I +D +++ L ++D   Q +A   +     +     L+V+ +T R +F+ +  T L  
Sbjct: 52  RRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRL 111
Query: 163 ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
                + ++ ++L+GNKSDL   REV  EEG   A       +ETSA L  N  E F   
Sbjct: 112 RAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGA 171
Query: 223 AKEI 226
            ++I
Sbjct: 172 VRQI 175

>pdb|4GZL|A Chain A, Crystal Structure Of Rac1 Q61l Mutant Length = 204

Iteration: 1
 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 15/127 (11%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +DGK + L +WDTAG E +  +    Y      L+ + +    +F ++   W  + R 
Sbjct: 71  VMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRH 130
Query: 166 HSNSNMVIMLIGNKSDL-DARREVKK-----------EEGEVFAREHGLV-FMETSAKLA 212
           H   N  I+L+G K DL D +  ++K            +G   A+E G V ++E SA   
Sbjct: 131 HC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 189
Query: 213 TNVEEAF 219
             ++  F
Sbjct: 190 RGLKTVF 196

>pdb|1M7B|A Chain A, Crystal Structure Of Rnd3RHOE: FUNCTIONAL IMPLICATIONS Length = 184

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN 168
           ID ++I+L +WDT+G   + ++    Y  +   L+ +DI+R ET + +    +   Q   
Sbjct: 50  IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 109
Query: 169 SNMVIMLIGNKSDL 182
            N  ++L+G KSDL
Sbjct: 110 PNTKMLLVGCKSDL 123

>pdb|2V55|B Chain B, Mechanism Of Multi-site Phosphorylation From A Rock-i:rhoe Complex Structure Length = 200

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN 168
           ID ++I+L +WDT+G   + ++    Y  +   L+ +DI+R ET + +    +   Q   
Sbjct: 66  IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 125
Query: 169 SNMVIMLIGNKSDL 182
            N  ++L+G KSDL
Sbjct: 126 PNTKMLLVGCKSDL 139

>pdb|1GWN|A Chain A, The Crystal Structure Of The Core Domain Of RhoeRND3 - A Constitutively Activated Small G Protein Length = 205

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/74 (31%), Positives = 41/74 (55%)
Query: 109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN 168
           ID ++I+L +WDT+G   + ++    Y  +   L+ +DI+R ET + +    +   Q   
Sbjct: 71  IDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC 130
Query: 169 SNMVIMLIGNKSDL 182
            N  ++L+G KSDL
Sbjct: 131 PNTKMLLVGCKSDL 144

>pdb|2REX|B Chain B, Crystal Structure Of The Effector Domain Of Plxnb1 Bound With Rnd1 Gtpase Length = 197

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 15/112 (13%)
Query: 112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH-LTTWLEDARQHSNSN 170
           ++++L +WDT+G   + ++    Y  +   LL +DI+R ET +  L  W  +   +  S 
Sbjct: 56  QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST 115
Query: 171 MVIMLIGNKSDL------------DARREVKKEEGEVFAREHGL-VFMETSA 209
            V +LIG K+DL              +  +  E+G   A++ G  +++E SA
Sbjct: 116 RV-LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 166

>pdb|2CLS|A Chain A, The Crystal Structure Of The Human Rnd1 Gtpase In The Active Gtp Bound State Length = 198

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 15/112 (13%)
Query: 112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH-LTTWLEDARQHSNSN 170
           ++++L +WDT+G   + ++    Y  +   LL +DI+R ET +  L  W  +   +  S 
Sbjct: 57  QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST 116
Query: 171 MVIMLIGNKSDL------------DARREVKKEEGEVFAREHGL-VFMETSA 209
            V +LIG K+DL              +  +  E+G   A++ G  +++E SA
Sbjct: 117 RV-LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 167

>pdb|3Q3J|B Chain B, Crystal Structure Of Plexin A2 Rbd In Complex With Rnd1 Length = 214

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 55/112 (49%), Gaps = 15/112 (13%)
Query: 112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH-LTTWLEDARQHSNSN 170
           ++++L +WDT+G   + ++    Y  +   LL +DI+R ET +  L  W  +   +  S 
Sbjct: 73  QRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYCPST 132
Query: 171 MVIMLIGNKSDL------------DARREVKKEEGEVFAREHGL-VFMETSA 209
            V +LIG K+DL              +  +  E+G   A++ G  +++E SA
Sbjct: 133 RV-LLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSA 183

>pdb|1RYF|A Chain A, Alternative Splicing Of Rac1 Generates Rac1b, A Self-Activating Gtpase Length = 203

Iteration: 1
 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 39/136 (28%), Positives = 56/136 (41%), Gaps = 34/136 (25%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR-------ETF------ 153
           + +DGK + L +WDTAGQE +  +    Y    G     DIT R       + F      
Sbjct: 46  VMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTVGETYGKDITSRGKDKPIADVFLICFSL 105
Query: 154 -------NHLTTWLEDARQHSNSNMVIMLIGNKSDL-DARREVKK-----------EEGE 194
                  N    W  + R H   N  I+L+G K DL D +  ++K            +G 
Sbjct: 106 VSPASFENVRAKWYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGL 164
Query: 195 VFAREHGLV-FMETSA 209
             A+E G V ++E SA
Sbjct: 165 AMAKEIGAVKYLECSA 180

>pdb|2ATX|A Chain A, Crystal Structure Of The Tc10 Gppnhp Complex Length = 194

Iteration: 1
 Score = 47.4 bits (111), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 36/135 (26%), Positives = 66/135 (48%), Gaps = 19/135 (14%)
Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLED 162
           A  +T+ GKQ  L ++DTAGQE +  +    Y      L+ + +    +F ++   W+ +
Sbjct: 56  AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPE 115
Query: 163 ARQHSNSNMVIMLIGNKSDL--DAR----------REVKKEEGEVFAREHG-LVFMETSA 209
            ++++  N+  +LIG + DL  D +          + +  E+G+  A+E G   ++E SA
Sbjct: 116 LKEYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSA 174
Query: 210 ----KLATNVEEAFI 220
                L T  +EA I
Sbjct: 175 LTQKGLKTVFDEAII 189

>pdb|1DS6|A Chain A, Crystal Structure Of A Rac-Rhogdi Complex Length = 192

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +D K + L +WDTAGQE +  +    Y      L+ + +    ++ ++   W  + R 
Sbjct: 44  VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 103
Query: 166 HSNSNMVIMLIGNKSDL 182
           H  S  +I L+G K DL
Sbjct: 104 HCPSTPII-LVGTKLDL 119

>pdb|2W2T|A Chain A, Rac2 (G12v) In Complex With Gdp Length = 185

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +D K + L +WDTAGQE +  +    Y      L+ + +    ++ ++   W  + R 
Sbjct: 50  VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 109
Query: 166 HSNSNMVIMLIGNKSDL 182
           H  S  +I L+G K DL
Sbjct: 110 HCPSTPII-LVGTKLDL 125

>pdb|2W2V|A Chain A, Rac2 (G12v) In Complex With Gtpgs Length = 184

Iteration: 1
 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQ 165
           + +D K + L +WDTAGQE +  +    Y      L+ + +    ++ ++   W  + R 
Sbjct: 51  VMVDSKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASYENVRAKWFPEVRH 110
Query: 166 HSNSNMVIMLIGNKSDL 182
           H  S  +I L+G K DL
Sbjct: 111 HCPSTPII-LVGTKLDL 126

>pdb|3PCR|B Chain B, Structure Of Espg-Arf6 Complex Length = 162

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
           T+  K +K  +WD  GQ+  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 38  TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 90
Query: 166 ------HSNSNMVIMLIGNKSDL-DARR--EVKKEEGEVFAREHGLVFMETSAKLATNVE 216
                     + +I++  NK DL DA +  E++++ G    R+       + A     + 
Sbjct: 91  HRIINDREXRDAIILIFANKQDLPDAXKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 150
Query: 217 EAF 219
           E  
Sbjct: 151 EGL 153

>pdb|2A5D|A Chain A, Structural Basis For The Activation Of Cholera Toxin By Human Arf6-Gtp Length = 175

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
           T+  K +K  +WD  GQ+  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 51  TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 103
Query: 168 N--------SNMVIMLIGNKSDL-DARR--EVKKEEGEVFAREHGLVFMETSAKLATNVE 216
           +         + +I++  NK DL DA +  E++++ G    R+       + A     + 
Sbjct: 104 HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 163
Query: 217 EAF 219
           E  
Sbjct: 164 EGL 166

>pdb|1E0S|A Chain A, Small G Protein Arf6-Gdp Length = 174

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
           T+  K +K  +WD  GQ+  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 50  TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 102
Query: 168 N--------SNMVIMLIGNKSDL-DARR--EVKKEEGEVFAREHGLVFMETSAKLATNVE 216
           +         + +I++  NK DL DA +  E++++ G    R+       + A     + 
Sbjct: 103 HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 162
Query: 217 EAF 219
           E  
Sbjct: 163 EGL 165

>pdb|4FME|C Chain C, Espg-Rab1-Arf6 Complex Length = 160

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
           T+  K +K  +WD  GQ+  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 38  TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 90
Query: 168 N--------SNMVIMLIGNKSDL-DARR--EVKKEEGEVFAREHGLVFMETSAKLATNVE 216
           +         + +I++  NK DL DA +  E++++ G    R+       + A     + 
Sbjct: 91  HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 150
Query: 217 EAF 219
           E  
Sbjct: 151 EGL 153

>pdb|3N5C|A Chain A, Crystal Structure Of Arf6delta13 Complexed With Gdp Length = 162

Iteration: 1
 Score = 45.8 bits (107), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 54/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
           T+  K +K  +WD  GQ+  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 38  TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 90
Query: 168 N--------SNMVIMLIGNKSDL-DARR--EVKKEEGEVFAREHGLVFMETSAKLATNVE 216
           +         + +I++  NK DL DA +  E++++ G    R+       + A     + 
Sbjct: 91  HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 150
Query: 217 EAF 219
           E  
Sbjct: 151 EGL 153

>pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In Trans State Soaked With Calcium Length = 497

Iteration: 1
 Score = 45.4 bits (106), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 15/83 (18%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
           T+  K +K  +WD  GQ+  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 360 TVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 412
Query: 168 N--------SNMVIMLIGNKSDL 182
           +         + +I++  NK DL
Sbjct: 413 HRIINDREMRDAIILIFANKQDL 435

>pdb|2A5G|A Chain A, Cholera Toxin A1 Subunit Bound To Arf6(Q67l) Length = 175

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
           T+  K +K  +WD  G +  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 51  TVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 103
Query: 168 N--------SNMVIMLIGNKSDL-DARR--EVKKEEGEVFAREHGLVFMETSAKLATNVE 216
           +         + +I++  NK DL DA +  E++++ G    R+       + A     + 
Sbjct: 104 HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 163
Query: 217 EAF 219
           E  
Sbjct: 164 EGL 166

>pdb|2W83|A Chain A, Crystal Structure Of The Arf6 Gtpase In Complex With A Specific Effector, Jip4 Length = 165

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
           T+  K +K  +WD  G +  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 41  TVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 93
Query: 168 N--------SNMVIMLIGNKSDL-DARR--EVKKEEGEVFAREHGLVFMETSAKLATNVE 216
           +         + +I++  NK DL DA +  E++++ G    R+       + A     + 
Sbjct: 94  HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 153
Query: 217 EAF 219
           E  
Sbjct: 154 EGL 156

>pdb|3VHX|A Chain A, The Crystal Structure Of Arf6-Mklp1 (Mitotic Kinesin-Like Protein 1) Complex Length = 172

Iteration: 1
 Score = 43.1 bits (100), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 18/123 (14%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
           T+  K +K  +WD  G +  R + R YY G  G + V D   R+        +++ARQ  
Sbjct: 40  TVTYKNVKFNVWDVGGLDKIRPLWRHYYTGTQGLIFVVDCADRDR-------IDEARQEL 92
Query: 168 N--------SNMVIMLIGNKSDL-DARR--EVKKEEGEVFAREHGLVFMETSAKLATNVE 216
           +         + +I++  NK DL DA +  E++++ G    R+       + A     + 
Sbjct: 93  HRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLY 152
Query: 217 EAF 219
           E  
Sbjct: 153 EGL 155

>pdb|3LRP|A Chain A, Crystal Structure Of Plasmodium Falciparum Adp-Ribosylation Factor 1 Length = 181

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 23/83 (27%), Positives = 38/83 (45%), Gaps = 15/83 (18%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
           T++ + I   +WD  GQ+  R + R YY    G + V D   RE        ++DAR+  
Sbjct: 55  TVEFRNISFTVWDVGGQDKIRPLWRHYYSNTDGLIFVVDSNDRER-------IDDAREEL 107
Query: 168 N--------SNMVIMLIGNKSDL 182
           +         + +I++  NK DL
Sbjct: 108 HRMINEEELKDAIILVFANKQDL 130

>pdb|1ZD9|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10b Length = 188

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 40/89 (44%), Gaps = 9/89 (10%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF----NH 155
           V F  R IT     IKL  WD  GQ  FRS+   Y RG +  + + D   +E      N 
Sbjct: 55  VGFNMRKITKGNVTIKL--WDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNE 112
Query: 156 LTTWLEDARQHSNSNMVIMLIGNKSDLDA 184
           L   L+  +      + ++++GNK DL  
Sbjct: 113 LHNLLDKPQLQG---IPVLVLGNKRDLPG 138

>pdb|1MOZ|A Chain A, Adp-Ribosylation Factor-Like 1 (Arl1) From Saccharomyces Cerevisiae Length = 183

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 52/125 (41%), Gaps = 7/125 (5%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
           T+  K +KL +WD  GQ + R   R YY   A  + V D T ++  +  +  L    Q  
Sbjct: 56  TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEE 115
Query: 168 N-SNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA---FI 220
              +  +++  NK D     +  EV KE   V  ++     + +SA     + E     I
Sbjct: 116 ELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLI 175
Query: 221 DTAKE 225
           D  KE
Sbjct: 176 DVIKE 180

>pdb|3DOE|A Chain A, Complex Of Arl2 And Bart, Crystal Form 1 Length = 192

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 33/128 (25%), Positives = 55/128 (42%), Gaps = 24/128 (18%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
            G  + T++ +  KL IWD  GQ++ RS  R+Y+    G + V D   R+        ++
Sbjct: 48  LGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR-------MQ 100
Query: 162 DARQHSNSNMV--------IMLIGNKSDL------DARREVKKEEGEVFAREHGLVFMET 207
           D ++   S +V        +++  NK DL      +A REV + +     R H       
Sbjct: 101 DCQRELQSLLVEERLAGATLLIFANKQDLPGALSSNAIREVLELDS---IRSHHWCIQGC 157
Query: 208 SAKLATNV 215
           SA    N+
Sbjct: 158 SAVTGENL 165

>pdb|2AL7|A Chain A, Structure Of Human Adp-Ribosylation Factor-Like 10c Length = 186

Iteration: 1
 Score = 40.8 bits (94), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF----NH 155
           V F  R +T     + ++IWD  GQ  FRS+   Y RG    + + D   RE      N 
Sbjct: 55  VGFNMRKVT--KGNVTIKIWDIGGQPRFRSMWERYCRGVNAIVYMIDAADREKIEASRNE 112
Query: 156 LTTWLEDARQHSNSNMVIMLIGNKSDL 182
           L   L+  +      + ++++GNK DL
Sbjct: 113 LHNLLDKPQLQG---IPVLVLGNKRDL 136

>pdb|1MR3|F Chain F, Saccharomyces Cerevisiae Adp-Ribosylation Factor 2 (Scarf2) Complexed With Gdp-3'p At 1.6a Resolution Length = 181

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR 150
           T+  K I   +WD  GQ+  RS+ R YYR   G + V D   R
Sbjct: 55  TVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVIDSNDR 97

>pdb|2K5U|A Chain A, Solution Structure Of Myirstoylated Yeast Arf1 Protein, Gdp- Bound Length = 181

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR 150
           T+  K I   +WD  GQ+  RS+ R YYR   G + V D   R
Sbjct: 55  TVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 97

>pdb|3TJZ|A Chain A, Crystal Structure Of Arf1 Bound To The GammaZETA-Cop Core Complex Length = 164

Iteration: 1
 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 17/43 (39%), Positives = 22/43 (51%)
Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR 150
           T+  K I   +WD  GQ+  RS+ R YYR   G + V D   R
Sbjct: 38  TVQYKNISFTVWDVGGQDRIRSLWRHYYRNTEGVIFVVDSNDR 80

>pdb|1KSG|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 1 Length = 186

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
            G  + T++ +  KL IWD  GQ++ RS  R+Y+    G + V D   R+        ++
Sbjct: 50  LGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR-------MQ 102
Query: 162 DARQHSNSNMV--------IMLIGNKSDL 182
           D ++   S +V        +++  NK DL
Sbjct: 103 DCQRELQSLLVEERLAGATLLIFANKQDL 131

>pdb|1KSH|A Chain A, Complex Of Arl2 And Pde Delta, Crystal Form 2 (Native) Length = 186

Iteration: 1
 Score = 40.8 bits (94), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 15/89 (16%)
Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
            G  + T++ +  KL IWD  GQ++ RS  R+Y+    G + V D   R+        ++
Sbjct: 50  LGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR-------MQ 102
Query: 162 DARQHSNSNMV--------IMLIGNKSDL 182
           D ++   S +V        +++  NK DL
Sbjct: 103 DCQRELQSLLVEERLAGATLLIFANKQDL 131

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-90
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	8e-32
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	8e-90
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	1e-30
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	7e-89
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	3e-30
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	3e-86
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	9e-28
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	3e-86
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-31
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	5e-86
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	8e-29
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	8e-86
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	1e-27
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	1e-85
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	2e-29
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	3e-85
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	5e-31
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	3e-85
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	1e-31
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-84
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	2e-28
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	3e-84
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	4e-28
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	5e-84
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	3e-27
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-83
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-31
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	8e-83
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	2e-27
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	1e-82
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	2e-27
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	1e-82
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	3e-27
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	3e-82
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	1e-27
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	8e-82
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	4e-28
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	9e-82
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	4e-27
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	1e-81
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	2e-27
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	2e-81
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	4e-26
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-81
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	1e-25
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	5e-81
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-26
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	5e-81
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	8e-27
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	1e-80
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	2e-28
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	4e-80
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	1e-28
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-79
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	9e-29
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-79
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	6e-26
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	4e-79
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	6e-28
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	4e-79
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	2e-24
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	7e-79
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	2e-27
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	2e-78
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	5e-26
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-78
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	3e-27
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-78
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	1e-24
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	3e-78
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	3e-26
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	7e-77
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	7e-27
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	1e-75
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	7e-25
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	1e-74
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	2e-25
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	6e-74
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	7e-22
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	1e-69
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	4e-22
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	1e-69
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	2e-26
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	2e-69
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	1e-21
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	2e-65
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	9e-25
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	4e-64
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	1e-24
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	4e-62
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	1e-24
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	6e-62
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	2e-23
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	7e-62
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	5e-24
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	4e-61
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	1e-23
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	3e-60
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	4e-23
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	4e-60
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	4e-23
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	9e-60
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	1e-15
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	1e-59
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	2e-23
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	1e-58
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	4e-22
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	2e-57
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	5e-22
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-57
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-21
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-55
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	1e-21
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	3e-55
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	7e-20
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	4e-55
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	4e-23
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	8e-55
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	5e-20
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-54
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	1e-21
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	7e-54
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	4e-20
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	9e-54
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	6e-21
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	2e-53
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	1e-19
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	8e-53
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	4e-20
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	1e-52
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	2e-19
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	4e-51
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-10
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	1e-46
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	2e-17
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	8e-43
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	6e-14
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	1e-42
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	8e-14
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	6e-34
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	9e-11
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	1e-30
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	7e-08
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-29
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	6e-09
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-29
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	3e-07
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	2e-28
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	9e-07
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	2e-28
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	6e-18
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	4e-28
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	8e-07
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-27
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-06
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	6e-27
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	3e-06
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	1e-25
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	4e-05
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	2e-25
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-06
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	5e-25
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	5e-05
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	2e-23
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	6e-04
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	2e-23
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	6e-05
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	1e-20
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	2e-05
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	2e-14
3llu_A	196	RAS-related GTP-binding protein C; structural geno	1e-10
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	7e-10
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	9e-10
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	1e-09
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	2e-09
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	3e-09
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	4e-09
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	5e-09
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	6e-09
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	1e-08
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	1e-08
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	2e-08
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	1e-07
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	1e-07
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	1e-07
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	4e-07
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	2e-06
2ged_A	193	SR-beta, signal recognition particle receptor beta	8e-05
1nrj_B	218	SR-beta, signal recognition particle receptor beta	1e-04
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-04

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  264 bits (677), Expect = 1e-90
 Identities = 120/137 (87%), Positives = 132/137 (96%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFGARM+ IDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRRETFNHLT+
Sbjct: 55  GVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTS 114

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WLEDARQHS+SNMVIMLIGNKSDL++RR+VK+EEGE FAREHGL+FMETSAK A NVEEA
Sbjct: 115 WLEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEA 174

Query: 219 FIDTAKEIYEKIQEGVF 235
           FI+TAKEIY KIQ+G+F
Sbjct: 175 FINTAKEIYRKIQQGLF 191

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score =  114 bits (287), Expect = 8e-32
 Identities = 53/65 (81%), Positives = 61/65 (93%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           MVIMLIGNKSDL++RR+VK+EEGE FAREHGL+FMETSAK A NVEEAFI+TAKEIY KI
Sbjct: 127 MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 186

Query: 61  QEGVF 65
           Q+G+F
Sbjct: 187 QQGLF 191

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  262 bits (671), Expect = 8e-90
 Identities = 87/138 (63%), Positives = 106/138 (76%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFG+++I + GK +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N LT 
Sbjct: 44  GVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTN 103

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL DAR  ++ N+VI+L GNK DLDA REV   E   FA+E+ L+F+ETSA    NVEEA
Sbjct: 104 WLTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEA 163

Query: 219 FIDTAKEIYEKIQEGVFD 236
           F+  A++I  KI+ G  D
Sbjct: 164 FVQCARKILNKIESGELD 181

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score =  111 bits (279), Expect = 1e-30
 Identities = 35/66 (53%), Positives = 45/66 (68%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           +VI+L GNK DLDA REV   E   FA+E+ L+F+ETSA    NVEEAF+  A++I  KI
Sbjct: 116 IVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 175

Query: 61  QEGVFD 66
           + G  D
Sbjct: 176 ESGELD 181

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  260 bits (667), Expect = 7e-89
 Identities = 84/138 (60%), Positives = 102/138 (73%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFG+R++ + GK +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N L  
Sbjct: 59  GVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAA 118

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL DAR  ++ N+V++L GNK DLD  REV   E   FA+E+ L+F+ETSA    NVEEA
Sbjct: 119 WLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEA 178

Query: 219 FIDTAKEIYEKIQEGVFD 236
           F+  A+ I  KI  G  D
Sbjct: 179 FLKCARTILNKIDSGELD 196

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score =  110 bits (278), Expect = 3e-30
 Identities = 33/66 (50%), Positives = 42/66 (63%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           +V++L GNK DLD  REV   E   FA+E+ L+F+ETSA    NVEEAF+  A+ I  KI
Sbjct: 131 IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKI 190

Query: 61  QEGVFD 66
             G  D
Sbjct: 191 DSGELD 196

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  252 bits (647), Expect = 3e-86
 Identities = 85/130 (65%), Positives = 110/130 (84%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFG R+I + G++IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL++
Sbjct: 49  GVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS 108

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL DAR  +N N VI+LIGNK+DL+A+R+V  EE + FA E+GL+F+E SAK   NVE+A
Sbjct: 109 WLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 168

Query: 219 FIDTAKEIYE 228
           F++ AK+IY+
Sbjct: 169 FLEAAKKIYQ 178

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score =  103 bits (259), Expect = 9e-28
 Identities = 33/58 (56%), Positives = 47/58 (81%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
            VI+LIGNK+DL+A+R+V  EE + FA E+GL+F+E SAK   NVE+AF++ AK+IY+
Sbjct: 121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ 178

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  254 bits (651), Expect = 3e-86
 Identities = 67/142 (47%), Positives = 99/142 (69%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEF  R + I+GK+IK QIWDTAGQE +R+IT +YYRGA GAL+VYDI++  ++ +   
Sbjct: 47  GVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNH 106

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL + R++++ N+ + LIGNKSDL   R V  EE + FA+E+ L+F ETSA  + NV++A
Sbjct: 107 WLSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKA 166

Query: 219 FIDTAKEIYEKIQEGVFDITNE 240
           F +    IY+K+ +   D+ + 
Sbjct: 167 FEELINTIYQKVSKHQMDLGDS 188

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score =  114 bits (286), Expect = 2e-31
 Identities = 32/96 (33%), Positives = 54/96 (56%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           + + LIGNKSDL   R V  EE + FA+E+ L+F ETSA  + NV++AF +    IY+K+
Sbjct: 119 VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKV 178

Query: 61  QEGVFDITNEANGIKIGPQHSPNNPSLPSGSSGSSS 96
            +   D+ + +         +PN P++    + + +
Sbjct: 179 SKHQMDLGDSSANGNANGASAPNGPTISLTPTPNEN 214

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  252 bits (647), Expect = 5e-86
 Identities = 66/134 (49%), Positives = 93/134 (69%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEF  R + +    +K QIWDTAG E +R+IT +YYRGA GALLV+D+T+ +T+  +  
Sbjct: 59  GVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVER 118

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL++   H+ + +V+ML+GNKSDL   REV  EE  +FA  +GL+F+ETSA  +TNVE A
Sbjct: 119 WLKELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELA 178

Query: 219 FIDTAKEIYEKIQE 232
           F    KEI+ K+ +
Sbjct: 179 FETVLKEIFAKVSK 192

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score =  106 bits (267), Expect = 8e-29
 Identities = 33/62 (53%), Positives = 44/62 (70%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           +V+ML+GNKSDL   REV  EE  +FA  +GL+F+ETSA  +TNVE AF    KEI+ K+
Sbjct: 131 IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV 190

Query: 61  QE 62
            +
Sbjct: 191 SK 192

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  252 bits (645), Expect = 8e-86
 Identities = 73/129 (56%), Positives = 92/129 (71%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEF  R I +DGK IK QIWDTAG E +R+IT +YYRGA GALLVYDI +  T+ ++  
Sbjct: 63  GVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVER 122

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL++ R H++SN+VIML+GNKSDL   R V  +E   FA ++GL F+ETSA  +TNVE A
Sbjct: 123 WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAA 182

Query: 219 FIDTAKEIY 227
           F     EIY
Sbjct: 183 FQTILTEIY 191

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score =  103 bits (259), Expect = 1e-27
 Identities = 31/57 (54%), Positives = 38/57 (66%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
           +VIML+GNKSDL   R V  +E   FA ++GL F+ETSA  +TNVE AF     EIY
Sbjct: 135 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEIY 191

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  252 bits (645), Expect = 1e-85
 Identities = 75/144 (52%), Positives = 96/144 (66%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEF  R I +DGK IK QIWDTAGQE +R IT +YYRGA GALLVYDI +  T+ ++  
Sbjct: 39  GVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVER 98

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL++ R H++SN+VIML+GNKSDL   R V  +E   FA ++ L F+ETSA  +TNVEEA
Sbjct: 99  WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEA 158

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           F +   EIY  + +         D
Sbjct: 159 FKNILTEIYRIVSQKQIADRAAHD 182

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score =  108 bits (271), Expect = 2e-29
 Identities = 32/86 (37%), Positives = 44/86 (51%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           +VIML+GNKSDL   R V  +E   FA ++ L F+ETSA  +TNVEEAF +   EIY  +
Sbjct: 111 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 170

Query: 61  QEGVFDITNEANGIKIGPQHSPNNPS 86
            +         +          + P 
Sbjct: 171 SQKQIADRAAHDESPGNNVVDISVPP 196

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  251 bits (643), Expect = 3e-85
 Identities = 62/142 (43%), Positives = 100/142 (70%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  + + +DGK +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  
Sbjct: 42  GVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKM 101

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL++  +++ S ++ +L+GNK DL  +R V+ +  + FA  + + F+ETSA  +TNVE+A
Sbjct: 102 WLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDA 161

Query: 219 FIDTAKEIYEKIQEGVFDITNE 240
           F+  A++I E + +   + T +
Sbjct: 162 FLTMARQIKESMSQQNLNETTQ 183

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score =  112 bits (283), Expect = 5e-31
 Identities = 27/91 (29%), Positives = 49/91 (53%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           ++ +L+GNK DL  +R V+ +  + FA  + + F+ETSA  +TNVE+AF+  A++I E +
Sbjct: 114 VLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM 173

Query: 61  QEGVFDITNEANGIKIGPQHSPNNPSLPSGS 91
            +   + T +    K        + +   G 
Sbjct: 174 SQQNLNETTQKKEDKGNVNLKGQSLTNTGGC 204

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  251 bits (642), Expect = 3e-85
 Identities = 68/142 (47%), Positives = 98/142 (69%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  
Sbjct: 50  GVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 109

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL++  ++++ N+  +L+GNK DL  ++ V     + FA   G+ F+ETSAK ATNVE++
Sbjct: 110 WLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 169

Query: 219 FIDTAKEIYEKIQEGVFDITNE 240
           F+  A EI +++  G      E
Sbjct: 170 FMTMAAEIKKRMGPGATAGGAE 191

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score =  114 bits (287), Expect = 1e-31
 Identities = 28/75 (37%), Positives = 44/75 (58%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           +  +L+GNK DL  ++ V     + FA   G+ F+ETSAK ATNVE++F+  A EI +++
Sbjct: 122 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 181

Query: 61  QEGVFDITNEANGIK 75
             G      E + +K
Sbjct: 182 GPGATAGGAEKSNVK 196

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  249 bits (637), Expect = 2e-84
 Identities = 60/138 (43%), Positives = 92/138 (66%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  + + I+G+++KLQIWDTAGQE FRSIT+SYYR A   +L YDIT  E+F  L  
Sbjct: 60  GVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPE 119

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL +  Q++++ ++ +L+GNK DL  RREV ++  E F+    + ++ETSAK + NVE+ 
Sbjct: 120 WLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKL 179

Query: 219 FIDTAKEIYEKIQEGVFD 236
           F+D A  +  + ++    
Sbjct: 180 FLDLACRLISEARQNTLV 197

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score =  105 bits (265), Expect = 2e-28
 Identities = 23/66 (34%), Positives = 40/66 (60%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           ++ +L+GNK DL  RREV ++  E F+    + ++ETSAK + NVE+ F+D A  +  + 
Sbjct: 132 VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEA 191

Query: 61  QEGVFD 66
           ++    
Sbjct: 192 RQNTLV 197

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  248 bits (635), Expect = 3e-84
 Identities = 60/134 (44%), Positives = 94/134 (70%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G++F  +++ +DG ++KLQ+WDTAGQE FRS+T +YYR A   LL+YD+T + +F+++  
Sbjct: 45  GIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQA 104

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL +  +++  ++ +ML+GNK D    R VK+E+GE  A+E+GL FMETSAK   NV+ A
Sbjct: 105 WLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164

Query: 219 FIDTAKEIYEKIQE 232
           F   AKE+  +  +
Sbjct: 165 FTAIAKELKRRSMK 178

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score =  104 bits (262), Expect = 4e-28
 Identities = 30/62 (48%), Positives = 41/62 (66%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           + +ML+GNK D    R VK+E+GE  A+E+GL FMETSAK   NV+ AF   AKE+  + 
Sbjct: 117 VALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRRS 176

Query: 61  QE 62
            +
Sbjct: 177 MK 178

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  247 bits (634), Expect = 5e-84
 Identities = 70/138 (50%), Positives = 96/138 (69%), Gaps = 1/138 (0%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  + + I GK++KLQIWDTAGQE FR+IT+SYYR A GA+L YDIT+R +F  +  
Sbjct: 63  GVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPH 122

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEE 217
           W+ED R+++ SN+V +LIGNKSDL   REV   E +  A  +  L  +ETSAK ++NVEE
Sbjct: 123 WIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEE 182

Query: 218 AFIDTAKEIYEKIQEGVF 235
           AF+  A E+  +    +F
Sbjct: 183 AFLRVATELIMRHGGPLF 200

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score =  102 bits (257), Expect = 3e-27
 Identities = 29/66 (43%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIYEK 59
           +V +LIGNKSDL   REV   E +  A  +  L  +ETSAK ++NVEEAF+  A E+  +
Sbjct: 135 IVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMR 194

Query: 60  IQEGVF 65
               +F
Sbjct: 195 HGGPLF 200

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  247 bits (633), Expect = 1e-83
 Identities = 59/144 (40%), Positives = 82/144 (56%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G++F  + I  + K+IKLQIWDTAG E +R+IT +YYRGA G +L+YDIT  E+FN +  
Sbjct: 42  GIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQD 101

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W    + +S  N  ++L+GNK D++  R V  E G   A   G  F E SAK   NV++ 
Sbjct: 102 WSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQT 161

Query: 219 FIDTAKEIYEKIQEGVFDITNEVD 242
           F      I EK+ E +      V 
Sbjct: 162 FERLVDVICEKMSESLDTADPAVT 185

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score =  114 bits (287), Expect = 1e-31
 Identities = 28/85 (32%), Positives = 38/85 (44%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
             ++L+GNK D++  R V  E G   A   G  F E SAK   NV++ F      I EK+
Sbjct: 114 AQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKM 173

Query: 61  QEGVFDITNEANGIKIGPQHSPNNP 85
            E +        G K GPQ +    
Sbjct: 174 SESLDTADPAVTGAKQGPQLTDQQA 198

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  244 bits (625), Expect = 8e-83
 Identities = 66/134 (49%), Positives = 99/134 (73%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G++F  R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++  
Sbjct: 42  GIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN 101

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W+ +  +H+++++  M++GNK D++ +R+V KE GE  A ++G+ FMETSAK   NVE A
Sbjct: 102 WIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENA 161

Query: 219 FIDTAKEIYEKIQE 232
           F   A++I  K+ +
Sbjct: 162 FFTLARDIKAKMDK 175

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score =  103 bits (258), Expect = 2e-27
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           +  M++GNK D++ +R+V KE GE  A ++G+ FMETSAK   NVE AF   A++I  K+
Sbjct: 114 VEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 173

Query: 61  QE 62
            +
Sbjct: 174 DK 175

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  244 bits (625), Expect = 1e-82
 Identities = 55/134 (41%), Positives = 84/134 (62%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G++F  + +    K++KLQIWDTAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  
Sbjct: 57  GIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD 116

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W    + +S  N  ++L+GNK D++  R V  E+G++ A + G  F E SAK   +V +A
Sbjct: 117 WATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQA 176

Query: 219 FIDTAKEIYEKIQE 232
           F      I +K+ +
Sbjct: 177 FERLVDAICDKMSD 190

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score =  103 bits (258), Expect = 2e-27
 Identities = 21/62 (33%), Positives = 35/62 (56%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
             ++L+GNK D++  R V  E+G++ A + G  F E SAK   +V +AF      I +K+
Sbjct: 129 AQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKM 188

Query: 61  QE 62
            +
Sbjct: 189 SD 190

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  244 bits (626), Expect = 1e-82
 Identities = 66/132 (50%), Positives = 96/132 (72%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  R I +DGK IKLQIWDTAGQE FR+IT SYYRGA G ++VYD+T +E+FN++  
Sbjct: 67  GVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQ 126

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL++  ++++ N+  +L+GNK DL  ++ V     + FA   G+ F+ETSAK ATNVE++
Sbjct: 127 WLQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQS 186

Query: 219 FIDTAKEIYEKI 230
           F+  A EI +++
Sbjct: 187 FMTMAAEIKKRM 198

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score =  102 bits (257), Expect = 3e-27
 Identities = 25/60 (41%), Positives = 39/60 (65%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           +  +L+GNK DL  ++ V     + FA   G+ F+ETSAK ATNVE++F+  A EI +++
Sbjct: 139 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRM 198

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  243 bits (622), Expect = 3e-82
 Identities = 58/134 (43%), Positives = 81/134 (60%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G++F  + +    K+IKLQIWDTAGQE +R+IT +YYRGA G LL+YDI  +E+F  +  
Sbjct: 56  GIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQD 115

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W    + +S  N  ++L+GNK DL+  R V  E+G   A + G  F E SAK   NV++ 
Sbjct: 116 WATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQV 175

Query: 219 FIDTAKEIYEKIQE 232
           F      I EK+ E
Sbjct: 176 FERLVDVICEKMNE 189

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score =  103 bits (260), Expect = 1e-27
 Identities = 24/62 (38%), Positives = 33/62 (53%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
             ++L+GNK DL+  R V  E+G   A + G  F E SAK   NV++ F      I EK+
Sbjct: 128 AQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM 187

Query: 61  QE 62
            E
Sbjct: 188 NE 189

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  241 bits (618), Expect = 8e-82
 Identities = 56/136 (41%), Positives = 88/136 (64%), Gaps = 1/136 (0%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  R + I+G+++KLQIWDTAGQE FR+IT +YYRG  G ++VYD+T  E+F ++  
Sbjct: 43  GVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKR 102

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL +  Q+ + ++  +L+GNK+D   R+ V+ E+   FA + G+   ETSAK   NVEE 
Sbjct: 103 WLHEINQNCD-DVCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM 161

Query: 219 FIDTAKEIYEKIQEGV 234
           F    + +    ++ +
Sbjct: 162 FNCITELVLRAKKDNL 177

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score =  104 bits (262), Expect = 4e-28
 Identities = 21/64 (32%), Positives = 35/64 (54%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           +  +L+GNK+D   R+ V+ E+   FA + G+   ETSAK   NVEE F    + +    
Sbjct: 114 VCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAK 173

Query: 61  QEGV 64
           ++ +
Sbjct: 174 KDNL 177

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  241 bits (618), Expect = 9e-82
 Identities = 56/134 (41%), Positives = 86/134 (64%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G  F ++ + ++   +K +IWDTAGQE + S+   YYRGAA A++V+D+T + +F     
Sbjct: 46  GAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKK 105

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W+++ +   N NMV+ L GNKSDL   R+V  E+ + +A+E+GL FMETSAK ATNV+E 
Sbjct: 106 WVQELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEI 165

Query: 219 FIDTAKEIYEKIQE 232
           F + A+ +      
Sbjct: 166 FYEIARRLPRVQPT 179

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score =  101 bits (255), Expect = 4e-27
 Identities = 30/62 (48%), Positives = 41/62 (66%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           MV+ L GNKSDL   R+V  E+ + +A+E+GL FMETSAK ATNV+E F + A+ +    
Sbjct: 118 MVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRVQ 177

Query: 61  QE 62
             
Sbjct: 178 PT 179

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  240 bits (616), Expect = 1e-81
 Identities = 54/130 (41%), Positives = 85/130 (65%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G  F  + + +D   +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F     
Sbjct: 40  GAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W+++ ++ ++ N+VI L GNK+DL  +R V  +E + +A ++ L+FMETSAK + NV E 
Sbjct: 100 WVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 159

Query: 219 FIDTAKEIYE 228
           F+  AK++ +
Sbjct: 160 FMAIAKKLPK 169

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score =  102 bits (256), Expect = 2e-27
 Identities = 26/58 (44%), Positives = 40/58 (68%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
           +VI L GNK+DL  +R V  +E + +A ++ L+FMETSAK + NV E F+  AK++ +
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score =  240 bits (615), Expect = 2e-81
 Identities = 65/134 (48%), Positives = 91/134 (67%), Gaps = 1/134 (0%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G++F  + + I+GK++KLQIWDTAGQE FR+IT +YYRGA G +LVYDIT   TF ++  
Sbjct: 37  GIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ 96

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W +   +H+N    ++L+GNKSD++  R V  ++GE  A+E G+ F+E+SAK   NV E 
Sbjct: 97  WFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 155

Query: 219 FIDTAKEIYEKIQE 232
           F   AK I EKI  
Sbjct: 156 FFTLAKLIQEKIDS 169

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 98.8 bits (247), Expect = 4e-26
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
             ++L+GNKSD++  R V  ++GE  A+E G+ F+E+SAK   NV E F   AK I EKI
Sbjct: 109 AQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 167

Query: 61  QE 62
             
Sbjct: 168 DS 169

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score =  240 bits (616), Expect = 2e-81
 Identities = 59/133 (44%), Positives = 93/133 (69%), Gaps = 1/133 (0%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  + + + GK+I+LQIWDTAGQE F SIT +YYR A G +LVYDIT++ETF+ L  
Sbjct: 60  GVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPK 119

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEE 217
           W++   ++++ +  ++L+GNK D +  RE+ +++GE FA++  G+ F E SAK   NV+E
Sbjct: 120 WMKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDE 179

Query: 218 AFIDTAKEIYEKI 230
            F+    +I +K+
Sbjct: 180 IFLKLVDDILKKM 192

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 98.1 bits (245), Expect = 1e-25
 Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 1/61 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
             ++L+GNK D +  RE+ +++GE FA++  G+ F E SAK   NV+E F+    +I +K
Sbjct: 132 AELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK 191

Query: 60  I 60
           +
Sbjct: 192 M 192

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  239 bits (612), Expect = 5e-81
 Identities = 53/130 (40%), Positives = 79/130 (60%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G  F  + +    +  K  IWDTAG E FR++   YYRG+A A++VYDIT+ ETF+ L  
Sbjct: 40  GASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKN 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W+ + RQH   ++V+ + GNK DL   REV + + + +A     +F+ETSAK A N+ E 
Sbjct: 100 WVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININEL 159

Query: 219 FIDTAKEIYE 228
           FI+ ++ I  
Sbjct: 160 FIEISRRIPS 169

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score =  100 bits (251), Expect = 1e-26
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
           +V+ + GNK DL   REV + + + +A     +F+ETSAK A N+ E FI+ ++ I  
Sbjct: 112 IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRIPS 169

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  239 bits (612), Expect = 5e-81
 Identities = 50/130 (38%), Positives = 76/130 (58%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G  F  + + I GK++ L IWDTAGQE F ++   YYR + GA+LVYDIT  ++F  +  
Sbjct: 40  GASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKN 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W+++ R+   + + + ++GNK DL+  R V  +E E +A   G     TSAK    +EE 
Sbjct: 100 WVKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEEL 159

Query: 219 FIDTAKEIYE 228
           F+D  K + E
Sbjct: 160 FLDLCKRMIE 169

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score =  100 bits (252), Expect = 8e-27
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
           + + ++GNK DL+  R V  +E E +A   G     TSAK    +EE F+D  K + E
Sbjct: 112 ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 169

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  240 bits (614), Expect = 1e-80
 Identities = 63/142 (44%), Positives = 91/142 (64%), Gaps = 1/142 (0%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G++F  + + I+GK++KLQ+WDTAGQE FR+IT +YYRGA G +LVYD+T   TF ++  
Sbjct: 54  GIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQ 113

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W +   +H+N    ++L+GNKSD++  R V  ++GE  A+E G+ F+E+SAK   NV E 
Sbjct: 114 WFKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 172

Query: 219 FIDTAKEIYEKIQEGVFDITNE 240
           F   AK I EKI          
Sbjct: 173 FFTLAKLIQEKIDSNKLVGVGN 194

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score =  106 bits (266), Expect = 2e-28
 Identities = 31/86 (36%), Positives = 42/86 (48%), Gaps = 1/86 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
             ++L+GNKSD++  R V  ++GE  A+E G+ F+E+SAK   NV E F   AK I EKI
Sbjct: 126 AQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 184

Query: 61  QEGVFDITNEANGIKIGPQHSPNNPS 86
                          I       N S
Sbjct: 185 DSNKLVGVGNGKEGNISINSGSGNSS 210

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  237 bits (608), Expect = 4e-80
 Identities = 52/147 (35%), Positives = 86/147 (58%), Gaps = 11/147 (7%)

Query: 99  GVEFGARMITID----------GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDIT 148
           G++F  + +             G++I LQ+WDTAG E FRS+T +++R A G LL++D+T
Sbjct: 45  GIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLT 104

Query: 149 RRETFNHLTTWLEDARQHSNS-NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMET 207
             ++F ++  W+   + H+ S N  I+L GNKSDL+ +R VK+EE    A ++G+ + ET
Sbjct: 105 NEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFET 164

Query: 208 SAKLATNVEEAFIDTAKEIYEKIQEGV 234
           SA   TN+  A       I ++++  V
Sbjct: 165 SAANGTNISHAIEMLLDLIMKRMERSV 191

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score =  106 bits (266), Expect = 1e-28
 Identities = 24/64 (37%), Positives = 37/64 (57%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
             I+L GNKSDL+ +R VK+EE    A ++G+ + ETSA   TN+  A       I +++
Sbjct: 128 PDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRM 187

Query: 61  QEGV 64
           +  V
Sbjct: 188 ERSV 191

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  237 bits (607), Expect = 1e-79
 Identities = 48/147 (32%), Positives = 88/147 (59%), Gaps = 11/147 (7%)

Query: 99  GVEFGARMITIDGK----------QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDIT 148
           G++F  + +  + +          ++ LQ+WDTAGQE FRS+T +++R A G LL++D+T
Sbjct: 59  GIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLT 118

Query: 149 RRETFNHLTTWLEDARQHSNS-NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMET 207
            +++F ++  W+   + ++   N  I+LIGNK+DL  +REV + +    A ++G+ + ET
Sbjct: 119 SQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFET 178

Query: 208 SAKLATNVEEAFIDTAKEIYEKIQEGV 234
           SA    NVE+A       I +++++ V
Sbjct: 179 SAATGQNVEKAVETLLDLIMKRMEQCV 205

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score =  107 bits (269), Expect = 9e-29
 Identities = 25/77 (32%), Positives = 42/77 (54%), Gaps = 1/77 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
             I+LIGNK+DL  +REV + +    A ++G+ + ETSA    NVE+A       I +++
Sbjct: 142 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRM 201

Query: 61  QEGVFDITNEANGIKIG 77
           ++ V   T   + +  G
Sbjct: 202 EQCVEK-TQIPDTVNGG 217

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score =  235 bits (603), Expect = 2e-79
 Identities = 51/134 (38%), Positives = 80/134 (59%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G  F  + +    +  K  IWDTAGQE F S+   YYRG+A A++VYDIT++++F  L  
Sbjct: 57  GASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKK 116

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W+++ ++H   N+V+ + GNK DL   REV  ++ + +A   G + +ETSAK A N+EE 
Sbjct: 117 WVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEEL 176

Query: 219 FIDTAKEIYEKIQE 232
           F   +++I      
Sbjct: 177 FQGISRQIPPLDPH 190

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 99.2 bits (248), Expect = 6e-26
 Identities = 22/62 (35%), Positives = 35/62 (56%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           +V+ + GNK DL   REV  ++ + +A   G + +ETSAK A N+EE F   +++I    
Sbjct: 129 IVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPPLD 188

Query: 61  QE 62
             
Sbjct: 189 PH 190

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  235 bits (602), Expect = 4e-79
 Identities = 64/135 (47%), Positives = 89/135 (65%), Gaps = 2/135 (1%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  + I++DG + KL IWDTAGQE FR++T SYYRGA G +LVYD+TRR+TF  L  
Sbjct: 49  GVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN 108

Query: 159 WLEDARQHSNSN-MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEE 217
           WL +   +   N +V ML+GNK D +  REV + EG  FAR+H ++F+E SAK    V+ 
Sbjct: 109 WLNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQC 167

Query: 218 AFIDTAKEIYEKIQE 232
           AF +  ++I +    
Sbjct: 168 AFEELVEKIIQTPGL 182

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score =  104 bits (262), Expect = 6e-28
 Identities = 29/77 (37%), Positives = 47/77 (61%), Gaps = 3/77 (3%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           +V ML+GNK D +  REV + EG  FAR+H ++F+E SAK    V+ AF +  ++I +  
Sbjct: 122 IVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP 180

Query: 61  QEGVFDITNEANGIKIG 77
             G+++  N+ +G   G
Sbjct: 181 --GLWESENQNSGPSSG 195

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score =  235 bits (602), Expect = 4e-79
 Identities = 53/137 (38%), Positives = 87/137 (63%), Gaps = 6/137 (4%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  + + +DG++  LQ+WDTAGQE FRSI +SY+R A G LL+YD+T  ++F ++  
Sbjct: 62  GVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIRE 121

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLD------ARREVKKEEGEVFAREHGLVFMETSAKLA 212
           W++     ++  + IML+GNK+D+        ++ V    GE  A  +G +F ETSAK  
Sbjct: 122 WVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDG 181

Query: 213 TNVEEAFIDTAKEIYEK 229
           +N+ EA +  A+E+ ++
Sbjct: 182 SNIVEAVLHLAREVKKR 198

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 95.4 bits (238), Expect = 2e-24
 Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 6/65 (9%)

Query: 1   MVIMLIGNKSDLD------ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK 54
           + IML+GNK+D+        ++ V    GE  A  +G +F ETSAK  +N+ EA +  A+
Sbjct: 134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAR 193

Query: 55  EIYEK 59
           E+ ++
Sbjct: 194 EVKKR 198

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  235 bits (601), Expect = 7e-79
 Identities = 35/149 (23%), Positives = 68/149 (45%), Gaps = 7/149 (4%)

Query: 99  GVEFGARMITIDGKQIKLQIW--DTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL 156
           GVE     +TI    + ++++  DTAG + ++     Y+ G   A+LV+D++  E+F   
Sbjct: 56  GVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESC 115

Query: 157 TTWLEDARQ---HSNSNMVIMLIGNKSDL-DARREVKKEEGEVFAREHGLVFMETSAKL- 211
             W E  +         +  +L+ NK+DL   R +V+ +  + +A  + L F + SA   
Sbjct: 116 KAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPP 175

Query: 212 ATNVEEAFIDTAKEIYEKIQEGVFDITNE 240
             + +  F+  A   Y   ++ V    + 
Sbjct: 176 GKDADAPFLSIATTFYRNYEDKVAAFQDA 204

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score =  103 bits (259), Expect = 2e-27
 Identities = 16/74 (21%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 1   MVIMLIGNKSDL-DARREVKKEEGEVFAREHGLVFMETSAKL-ATNVEEAFIDTAKEIYE 58
           +  +L+ NK+DL   R +V+ +  + +A  + L F + SA     + +  F+  A   Y 
Sbjct: 133 LRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYR 192

Query: 59  KIQEGVFDITNEAN 72
             ++ V    +   
Sbjct: 193 NYEDKVAAFQDACR 206

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score =  233 bits (596), Expect = 2e-78
 Identities = 54/129 (41%), Positives = 88/129 (68%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G++F ++ + ++ + ++LQ+WDTAGQE FRS+  SY R +  A++VYDIT   +F+  + 
Sbjct: 48  GIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSK 107

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W++D R    S+++IML+GNK+DL  +R+V  EEGE  A+E  ++F+ETSAK   NV++ 
Sbjct: 108 WIDDVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 167

Query: 219 FIDTAKEIY 227
           F   A  + 
Sbjct: 168 FRRVAAALP 176

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 99.2 bits (248), Expect = 5e-26
 Identities = 26/57 (45%), Positives = 39/57 (68%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
           ++IML+GNK+DL  +R+V  EEGE  A+E  ++F+ETSAK   NV++ F   A  + 
Sbjct: 120 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALP 176

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  234 bits (599), Expect = 2e-78
 Identities = 55/146 (37%), Positives = 90/146 (61%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G++F ++ + ++ + ++LQ+WDTAG E FRS+  SY R +  A++VYDIT   +F   T 
Sbjct: 50  GIDFLSKTMYLEDRTVRLQLWDTAGLERFRSLIPSYIRDSTVAVVVYDITNVNSFQQTTK 109

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W++D R    S+++IML+GNK+DL  +R+V  EEGE  A+E  ++F+ETSAK   NV++ 
Sbjct: 110 WIDDVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 169

Query: 219 FIDTAKEIYEKIQEGVFDITNEVDLV 244
           F   A  +            + +D+ 
Sbjct: 170 FRRVAAALPGMESTQDRSREDMIDIK 195

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score =  103 bits (258), Expect = 3e-27
 Identities = 29/86 (33%), Positives = 45/86 (52%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           ++IML+GNK+DL  +R+V  EEGE  A+E  ++F+ETSAK   NV++ F   A  +    
Sbjct: 122 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME 181

Query: 61  QEGVFDITNEANGIKIGPQHSPNNPS 86
                   +  +     PQ  P +  
Sbjct: 182 STQDRSREDMIDIKLEKPQEQPVSEG 207

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score =  233 bits (596), Expect = 2e-78
 Identities = 53/135 (39%), Positives = 81/135 (60%), Gaps = 5/135 (3%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFR-SITRSYYRGAAGALLVYDITRRETFNHLT 157
           GV+F  R + IDG++IK+Q+WDTAGQE FR S+ + YYR     + VYD+T   +F+ L 
Sbjct: 54  GVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP 113

Query: 158 TWLEDARQHSNSNMV-IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA---T 213
            W+E+ +QH  +N +  +L+GNK DL +  +V  +  + FA  H +   ETSAK      
Sbjct: 114 AWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND 173

Query: 214 NVEEAFIDTAKEIYE 228
           +VE  F+  A ++  
Sbjct: 174 HVEAIFMTLAHKLKS 188

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 95.4 bits (238), Expect = 1e-24
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA---TNVEEAFIDTAKEIY 57
           +  +L+GNK DL +  +V  +  + FA  H +   ETSAK      +VE  F+  A ++ 
Sbjct: 128 IPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK 187

Query: 58  E 58
            
Sbjct: 188 S 188

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score =  232 bits (594), Expect = 3e-78
 Identities = 50/131 (38%), Positives = 74/131 (56%), Gaps = 1/131 (0%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  R I ++ + ++L +WDTAGQE F +IT++YYRGA   +LV+  T RE+F  +++
Sbjct: 39  GVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISS 98

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W E        ++   L+ NK DL     +K EE E  A+   L F  TS K   NV E 
Sbjct: 99  WREKVVAEV-GDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEV 157

Query: 219 FIDTAKEIYEK 229
           F   A++  +K
Sbjct: 158 FKYLAEKHLQK 168

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 99.1 bits (248), Expect = 3e-26
 Identities = 21/59 (35%), Positives = 28/59 (47%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           +   L+ NK DL     +K EE E  A+   L F  TS K   NV E F   A++  +K
Sbjct: 110 IPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQK 168

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  228 bits (585), Expect = 7e-77
 Identities = 48/138 (34%), Positives = 68/138 (49%), Gaps = 4/138 (2%)

Query: 99  GVEFGARMITIDGK-QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT 157
           G++F  R IT+ G   + LQIWD  GQ     +   Y  GA G LLVYDIT  ++F +L 
Sbjct: 40  GLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLE 99

Query: 158 TWLEDARQ---HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATN 214
            W    ++    S +  ++ L+GNK DL+  R +K E+   F +E+G      SAK   +
Sbjct: 100 DWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDS 159

Query: 215 VEEAFIDTAKEIYEKIQE 232
           V   F   A EI      
Sbjct: 160 VFLCFQKVAAEILGIKLN 177

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score =  101 bits (253), Expect = 7e-27
 Identities = 20/62 (32%), Positives = 29/62 (46%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
            ++ L+GNK DL+  R +K E+   F +E+G      SAK   +V   F   A EI    
Sbjct: 116 PLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILGIK 175

Query: 61  QE 62
             
Sbjct: 176 LN 177

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score =  227 bits (581), Expect = 1e-75
 Identities = 39/135 (28%), Positives = 64/135 (47%)

Query: 98  GGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT 157
           G V      +   G  IK  +WDTAGQE    +   YY GA+GA+L +D+T R T  +L 
Sbjct: 45  GAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLA 104

Query: 158 TWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEE 217
            W+++ +    +   I++  NK D+  R+++ K+      +     + E SAK A N   
Sbjct: 105 RWVKEFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGL 164

Query: 218 AFIDTAKEIYEKIQE 232
            F+  A+    +   
Sbjct: 165 PFLHLARIFTGRPDL 179

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 97.0 bits (242), Expect = 7e-25
 Identities = 14/62 (22%), Positives = 26/62 (41%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
             I++  NK D+  R+++ K+      +     + E SAK A N    F+  A+    + 
Sbjct: 118 APIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRP 177

Query: 61  QE 62
             
Sbjct: 178 DL 179

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score =  224 bits (573), Expect = 1e-74
 Identities = 47/139 (33%), Positives = 79/139 (56%), Gaps = 4/139 (2%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G +F  + + +D + + +QIWDTAGQE F+S+  ++YRGA   +LV+D+T   TF  L +
Sbjct: 42  GADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS 101

Query: 159 WLEDARQHSN----SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATN 214
           W ++    ++     N   +++GNK DL+ R+   K        ++ + + ETSAK A N
Sbjct: 102 WRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAIN 161

Query: 215 VEEAFIDTAKEIYEKIQEG 233
           VE+AF   A+   ++  E 
Sbjct: 162 VEQAFQTIARNALKQETEV 180

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 98.1 bits (245), Expect = 2e-25
 Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 1/86 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
              +++GNK DL+ R+   K        ++ + + ETSAK A NVE+AF   A+   ++ 
Sbjct: 118 FPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE 177

Query: 61  QEGVFDITNEANGIKIGPQHSPNNPS 86
            E           IK+         +
Sbjct: 178 TEVELY-NEFPEPIKLDKNERAKASA 202

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score =  221 bits (566), Expect = 6e-74
 Identities = 47/137 (34%), Positives = 80/137 (58%), Gaps = 6/137 (4%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEF  + + +DG  + +QIWDTAGQE FRS+   +YRG+   LL + +   ++F +L+ 
Sbjct: 41  GVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSN 100

Query: 159 WLEDARQHSN----SNMVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLAT 213
           W ++   +++     +   +++GNK D+   R+V  EE + + R++G   + ETSAK AT
Sbjct: 101 WKKEFIYYADVKEPESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDAT 159

Query: 214 NVEEAFIDTAKEIYEKI 230
           NV  AF +  + +    
Sbjct: 160 NVAAAFEEAVRRVLATE 176

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 88.0 bits (219), Expect = 7e-22
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIYEK 59
              +++GNK D+   R+V  EE + + R++G   + ETSAK ATNV  AF +  + +   
Sbjct: 117 FPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLAT 175

Query: 60  I 60
            
Sbjct: 176 E 176

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score =  210 bits (538), Expect = 1e-69
 Identities = 47/140 (33%), Positives = 83/140 (59%), Gaps = 7/140 (5%)

Query: 99  GVEFGARMITIDG-KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT 157
           G +F  + +T+DG K   +Q+WDTAGQE F+S+  ++YRGA   +LVYD+T   +F ++ 
Sbjct: 42  GADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIK 101

Query: 158 TWLEDARQHSN----SNMVIMLIGNKSDL-DARREVKKEEGEVFAREHGLV-FMETSAKL 211
           +W ++   H+N         +++GNK D  ++++ V ++  +  A+  G +    TSAK 
Sbjct: 102 SWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKN 161

Query: 212 ATNVEEAFIDTAKEIYEKIQ 231
           A NV+ AF + A+   ++ Q
Sbjct: 162 AINVDTAFEEIARSALQQNQ 181

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 88.8 bits (221), Expect = 4e-22
 Identities = 18/63 (28%), Positives = 35/63 (55%), Gaps = 2/63 (3%)

Query: 1   MVIMLIGNKSDL-DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDTAKEIYE 58
              +++GNK D  ++++ V ++  +  A+  G +    TSAK A NV+ AF + A+   +
Sbjct: 119 FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 178

Query: 59  KIQ 61
           + Q
Sbjct: 179 QNQ 181

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  211 bits (540), Expect = 1e-69
 Identities = 50/170 (29%), Positives = 80/170 (47%), Gaps = 40/170 (23%)

Query: 99  GVEFGARMITIDGKQIK-------------------------------------LQIWDT 121
           G  F   ++ ++   IK                                       IWDT
Sbjct: 41  GASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDT 100

Query: 122 AGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSD 181
           AGQE + SI   YYRGA  A++V+DI+   T +   TW+   +    SN +I+L+ NK D
Sbjct: 101 AGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKIS--SNYIIILVANKID 158

Query: 182 LDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 231
            + + +V   E + +A+++ L+F++TSAK  TN++  F   A+EIY+ I 
Sbjct: 159 KN-KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNII 207

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score =  100 bits (251), Expect = 2e-26
 Identities = 22/61 (36%), Positives = 40/61 (65%), Gaps = 1/61 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
            +I+L+ NK D + + +V   E + +A+++ L+F++TSAK  TN++  F   A+EIY+ I
Sbjct: 148 YIIILVANKIDKN-KFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI 206

Query: 61  Q 61
            
Sbjct: 207 I 207

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score =  212 bits (541), Expect = 2e-69
 Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 3/134 (2%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVE    +   +   IK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++  
Sbjct: 49  GVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPN 108

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W  D  +    N+ I+L GNK D+  R+     +  VF R+  L + + SAK   N E+ 
Sbjct: 109 WHRDLVRVCE-NIPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKP 165

Query: 219 FIDTAKEIYEKIQE 232
           F+  A+++      
Sbjct: 166 FLWLARKLIGDPNL 179

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 88.5 bits (220), Expect = 1e-21
 Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           + I+L GNK D+  R+     +  VF R+  L + + SAK   N E+ F+  A+++    
Sbjct: 120 IPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP 177

Query: 61  Q-EGVFDITNEANGIKIGPQ 79
             E V         + + P 
Sbjct: 178 NLEFVAMPALAPPEVVMDPA 197

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score =  199 bits (509), Expect = 2e-65
 Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 2/133 (1%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRS-YYRGAAGALLVYDITRRETFNHLT 157
             +   R I +D +++ L ++D   Q       +    +     L+V+ +T R +F+ + 
Sbjct: 36  SEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVP 95

Query: 158 TWLEDA-RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
             L        + ++ ++L+GNKSDL   REV  EEG   A       +ETSA L  N  
Sbjct: 96  ETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 155

Query: 217 EAFIDTAKEIYEK 229
           E F    ++I  +
Sbjct: 156 ELFEGAVRQIRLR 168

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 95.3 bits (238), Expect = 9e-25
 Identities = 23/59 (38%), Positives = 31/59 (52%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           + ++L+GNKSDL   REV  EEG   A       +ETSA L  N  E F    ++I  +
Sbjct: 110 LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR 168

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score =  197 bits (503), Expect = 4e-64
 Identities = 36/136 (26%), Positives = 60/136 (44%), Gaps = 2/136 (1%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRS-YYRGAAGALLVYDITRRETFNHLT 157
             +   R I +D +++ L ++D   Q       R    +     L+V+ +T R +F+ + 
Sbjct: 57  PEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVP 116

Query: 158 TWLED-ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
             L        + ++ ++L+GNKSDL   REV  EEG   A       +ETSA L  N  
Sbjct: 117 ETLLRLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTR 176

Query: 217 EAFIDTAKEIYEKIQE 232
           E F    ++I  +   
Sbjct: 177 ELFEGAVRQIRLRRGR 192

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 95.7 bits (239), Expect = 1e-24
 Identities = 23/62 (37%), Positives = 31/62 (50%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           + ++L+GNKSDL   REV  EEG   A       +ETSA L  N  E F    ++I  + 
Sbjct: 131 LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLRR 190

Query: 61  QE 62
             
Sbjct: 191 GR 192

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score =  191 bits (488), Expect = 4e-62
 Identities = 42/137 (30%), Positives = 65/137 (47%), Gaps = 3/137 (2%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSIT--RSYYRGAAGALLVYDITRRETFNHL 156
           G +   R +T+DG+   L + DT   E         S  +G +  ++VY I  R +F   
Sbjct: 37  GEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESA 96

Query: 157 TTWLED-ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNV 215
           +       R H   ++ I+L+GNK+DL   REV  EEG   A      F+ETSA L  NV
Sbjct: 97  SELRIQLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNV 156

Query: 216 EEAFIDTAKEIYEKIQE 232
            E F    +++  + ++
Sbjct: 157 AELFEGVVRQLRLRRRD 173

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 94.9 bits (237), Expect = 1e-24
 Identities = 24/62 (38%), Positives = 35/62 (56%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           + I+L+GNK+DL   REV  EEG   A      F+ETSA L  NV E F    +++  + 
Sbjct: 112 VPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRR 171

Query: 61  QE 62
           ++
Sbjct: 172 RD 173

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score =  191 bits (487), Expect = 6e-62
 Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 1/126 (0%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           ++ ++DG   +L I DTAGQE F ++   Y R   G LLV+ I  R++FN +        
Sbjct: 48  KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQIL 107

Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           R     +  ++L+GNK+DL+++R+V + E   F   H + + E SAKL  NV+EAF    
Sbjct: 108 RVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLV 167

Query: 224 KEIYEK 229
           + + + 
Sbjct: 168 RAVRKY 173

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 92.2 bits (230), Expect = 2e-23
 Identities = 21/59 (35%), Positives = 36/59 (61%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
             ++L+GNK+DL+++R+V + E   F   H + + E SAKL  NV+EAF    + + + 
Sbjct: 115 FPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKY 173

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score =  190 bits (486), Expect = 7e-62
 Identities = 45/126 (35%), Positives = 76/126 (60%), Gaps = 1/126 (0%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           + + +DG+++++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F     + E   
Sbjct: 43  KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 102

Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           R   + N+  +L+GNKSDL+ +R+V  EE +  A +  + ++ETSAK   NV++ F D  
Sbjct: 103 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLM 162

Query: 224 KEIYEK 229
           +EI  +
Sbjct: 163 REIRAR 168

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 93.3 bits (233), Expect = 5e-24
 Identities = 23/59 (38%), Positives = 38/59 (64%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           +  +L+GNKSDL+ +R+V  EE +  A +  + ++ETSAK   NV++ F D  +EI  +
Sbjct: 110 VPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score =  189 bits (482), Expect = 4e-61
 Identities = 46/129 (35%), Positives = 77/129 (59%), Gaps = 1/129 (0%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           + + +DG+++++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F     + E   
Sbjct: 57  KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 116

Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           R   + N+  +L+GNKSDL+ +R+V  EE +  A +  + ++ETSAK   NV++ F D  
Sbjct: 117 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 176

Query: 224 KEIYEKIQE 232
           +EI  +  E
Sbjct: 177 REIRARKME 185

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 93.0 bits (232), Expect = 1e-23
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           +  +L+GNKSDL+ +R+V  EE +  A +  + ++ETSAK   NV++ F D  +EI  + 
Sbjct: 124 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 183

Query: 61  QE 62
            E
Sbjct: 184 ME 185

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score =  187 bits (478), Expect = 3e-60
 Identities = 46/129 (35%), Positives = 77/129 (59%), Gaps = 1/129 (0%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           + + +DG+++++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F     + E   
Sbjct: 53  KKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQIL 112

Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           R   + N+  +L+GNKSDL+ +R+V  EE +  A +  + ++ETSAK   NV++ F D  
Sbjct: 113 RVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLM 172

Query: 224 KEIYEKIQE 232
           +EI  +  E
Sbjct: 173 REIRARKME 181

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 91.9 bits (229), Expect = 4e-23
 Identities = 24/62 (38%), Positives = 39/62 (62%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           +  +L+GNKSDL+ +R+V  EE +  A +  + ++ETSAK   NV++ F D  +EI  + 
Sbjct: 120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK 179

Query: 61  QE 62
            E
Sbjct: 180 ME 181

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score =  187 bits (477), Expect = 4e-60
 Identities = 37/126 (29%), Positives = 65/126 (51%), Gaps = 1/126 (0%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           +++T+   +  L + DTAGQ+ +  +  S+  G  G +LVY +T   +F  + +  +   
Sbjct: 63  KIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLH 122

Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
             H  + + ++L+GNK+DL   REV+  EG+  A   G  FME+SA+     +  F    
Sbjct: 123 EGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVI 182

Query: 224 KEIYEK 229
           +EI   
Sbjct: 183 QEIARV 188

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 91.9 bits (229), Expect = 4e-23
 Identities = 21/59 (35%), Positives = 32/59 (54%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           + ++L+GNK+DL   REV+  EG+  A   G  FME+SA+     +  F    +EI   
Sbjct: 130 VPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARV 188

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score =  185 bits (471), Expect = 9e-60
 Identities = 54/134 (40%), Positives = 82/134 (61%), Gaps = 3/134 (2%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G  F  + +TI+   +K +IWDTAGQE F S+   YYR A  AL+VYD+T+ ++F     
Sbjct: 37  GAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARH 96

Query: 159 WLEDARQHSNSNMVIMLIGNKSD---LDARREVKKEEGEVFAREHGLVFMETSAKLATNV 215
           W+++  + ++ +++I L+GNK D       R+V +EEGE  A E GL+F ETSAK   NV
Sbjct: 97  WVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENV 156

Query: 216 EEAFIDTAKEIYEK 229
            + F+   ++I  K
Sbjct: 157 NDVFLGIGEKIPLK 170

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 71.4 bits (175), Expect = 1e-15
 Identities = 27/62 (43%), Positives = 37/62 (59%), Gaps = 3/62 (4%)

Query: 1   MVIMLIGNKSD---LDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
           ++I L+GNK D       R+V +EEGE  A E GL+F ETSAK   NV + F+   ++I 
Sbjct: 109 IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168

Query: 58  EK 59
            K
Sbjct: 169 LK 170

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score =  185 bits (471), Expect = 1e-59
 Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 1/126 (0%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           R I +DG++  L ++D   Q+  R +           ++VY +T + +F   +       
Sbjct: 40  RSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLR 99

Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           R     ++ I+L+GNKSDL   REV  +EG   A      F+ETSA L  NV+  F    
Sbjct: 100 RARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVV 159

Query: 224 KEIYEK 229
           ++I  +
Sbjct: 160 RQIRLR 165

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 91.8 bits (229), Expect = 2e-23
 Identities = 24/58 (41%), Positives = 32/58 (55%)

Query: 2   VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
            I+L+GNKSDL   REV  +EG   A      F+ETSA L  NV+  F    ++I  +
Sbjct: 108 PIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR 165

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score =  182 bits (465), Expect = 1e-58
 Identities = 37/126 (29%), Positives = 61/126 (48%), Gaps = 1/126 (0%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           ++IT++G++  LQ+ DTAGQ+ +    ++Y     G +LVY +T  ++F  +        
Sbjct: 45  KLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLL 104

Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
                  + IML+GNK DL   R +  EEG+  A      F+E+SAK      + F    
Sbjct: 105 DMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRII 164

Query: 224 KEIYEK 229
            E  + 
Sbjct: 165 LEAEKM 170

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 88.7 bits (221), Expect = 4e-22
 Identities = 20/59 (33%), Positives = 28/59 (47%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           + IML+GNK DL   R +  EEG+  A      F+E+SAK      + F     E  + 
Sbjct: 112 IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM 170

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score =  179 bits (457), Expect = 2e-57
 Identities = 44/127 (34%), Positives = 68/127 (53%), Gaps = 1/127 (0%)

Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWL 160
           +F  + I +D     L+I DTAG E F S+   Y +   G +LVY +  +++F  +    
Sbjct: 38  DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMR 97

Query: 161 ED-ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           +   R      + ++L+GNK DL++ REV   EG   A E G  FMETSAK  T V+E F
Sbjct: 98  DQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF 157

Query: 220 IDTAKEI 226
            +  +++
Sbjct: 158 AEIVRQM 164

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 88.3 bits (220), Expect = 5e-22
 Identities = 25/56 (44%), Positives = 36/56 (64%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           + ++L+GNK DL++ REV   EG   A E G  FMETSAK  T V+E F +  +++
Sbjct: 109 VPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQM 164

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score =  180 bits (458), Expect = 2e-57
 Identities = 39/127 (30%), Positives = 70/127 (55%), Gaps = 2/127 (1%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           +   ID +   L + DTAGQE F ++   Y R   G L+VY +T + +F H+  + +   
Sbjct: 57  KHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLIL 116

Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDT 222
           R     +  ++L+ NK DL   R+V +++G+  A ++ + ++ETSAK    NV++ F D 
Sbjct: 117 RVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDL 176

Query: 223 AKEIYEK 229
            + I ++
Sbjct: 177 VRVIRQQ 183

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 87.2 bits (217), Expect = 2e-21
 Identities = 19/58 (32%), Positives = 37/58 (63%), Gaps = 1/58 (1%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDTAKEIYEK 59
           ++L+ NK DL   R+V +++G+  A ++ + ++ETSAK    NV++ F D  + I ++
Sbjct: 126 MILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 183

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score =  174 bits (443), Expect = 2e-55
 Identities = 44/127 (34%), Positives = 60/127 (47%), Gaps = 2/127 (1%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           ++I+ D     LQI DT G   F ++ R         +LVY IT R++   L    E   
Sbjct: 42  QVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQIC 101

Query: 165 QH--SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
           +      ++ IML+GNK D    REV+  E E  AR     FMETSAKL  NV+E F + 
Sbjct: 102 EIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQEL 161

Query: 223 AKEIYEK 229
                 +
Sbjct: 162 LNLEKRR 168

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 87.6 bits (218), Expect = 1e-21
 Identities = 26/57 (45%), Positives = 31/57 (54%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           IML+GNK D    REV+  E E  AR     FMETSAKL  NV+E F +       +
Sbjct: 112 IMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 168

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score =  173 bits (442), Expect = 3e-55
 Identities = 43/125 (34%), Positives = 72/125 (57%), Gaps = 2/125 (1%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 42  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIK 101

Query: 165 QHSNS-NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S ++ ++L+GNKSDL   R V+  + +  AR +G+ ++ETSAK    VE+AF    
Sbjct: 102 RVKDSDDVPMVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLV 160

Query: 224 KEIYE 228
           +EI +
Sbjct: 161 REIRQ 165

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 82.5 bits (205), Expect = 7e-20
 Identities = 23/56 (41%), Positives = 36/56 (64%), Gaps = 1/56 (1%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
           ++L+GNKSDL   R V+  + +  AR +G+ ++ETSAK    VE+AF    +EI +
Sbjct: 111 MVLVGNKSDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score =  175 bits (445), Expect = 4e-55
 Identities = 39/138 (28%), Positives = 63/138 (45%), Gaps = 6/138 (4%)

Query: 99  GVEFGARMITIDGKQ---IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH 155
           G +   R + +DG+    I L +W+  G+  +  +     +     L+VY IT R +F  
Sbjct: 72  GEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEK 129

Query: 156 LTTWLED-ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATN 214
            +       R     ++ I+L+GNKSDL   REV   EG   A      F+ETSA +  N
Sbjct: 130 ASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHN 189

Query: 215 VEEAFIDTAKEIYEKIQE 232
           V+E F    +++  +   
Sbjct: 190 VKELFEGIVRQVRLRRDS 207

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 92.4 bits (230), Expect = 4e-23
 Identities = 23/62 (37%), Positives = 33/62 (53%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           + I+L+GNKSDL   REV   EG   A      F+ETSA +  NV+E F    +++  + 
Sbjct: 146 IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR 205

Query: 61  QE 62
             
Sbjct: 206 DS 207

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score =  172 bits (439), Expect = 8e-55
 Identities = 47/124 (37%), Positives = 69/124 (55%), Gaps = 2/124 (1%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           + + +D +Q  L+I DTAG E F ++   Y +   G  LVY IT + TFN L    E   
Sbjct: 42  KQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQIL 101

Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDT 222
           R     ++ ++L+GNK DL+  R V KE+G+  AR+     F+E+SAK   NV E F D 
Sbjct: 102 RVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDL 161

Query: 223 AKEI 226
            ++I
Sbjct: 162 VRQI 165

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 82.9 bits (206), Expect = 5e-20
 Identities = 24/55 (43%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEI 56
           ++L+GNK DL+  R V KE+G+  AR+     F+E+SAK   NV E F D  ++I
Sbjct: 111 MILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI 165

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score =  173 bits (440), Expect = 1e-54
 Identities = 46/128 (35%), Positives = 66/128 (51%), Gaps = 5/128 (3%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITR-SYYRGAAGALLVYDITRRETFNHLTTWLED- 162
              TID + + ++I DTAGQE   +I R  + R   G +LVYDIT R +F  +       
Sbjct: 67  HQATIDDEVVSMEILDTAGQE--DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNIL 124

Query: 163 ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA-TNVEEAFID 221
                  N+ ++L+GNK+DLD  R+V  EEGE  A E    F E SA     N+ E F +
Sbjct: 125 DEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYE 184

Query: 222 TAKEIYEK 229
             +E+  +
Sbjct: 185 LCREVRRR 192

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 87.7 bits (218), Expect = 1e-21
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA-TNVEEAFIDTAKEIYEK 59
           + ++L+GNK+DLD  R+V  EEGE  A E    F E SA     N+ E F +  +E+  +
Sbjct: 133 VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 192

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score =  171 bits (435), Expect = 7e-54
 Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 3/130 (2%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           ++I+ D     LQI DT G   F ++ R         +LV+ +T +++   L    +   
Sbjct: 47  QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIV 106

Query: 165 Q--HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
           Q   S  ++ +ML+GNK D   +REV   E +  A+E    FMETSAK+  NV+E F + 
Sbjct: 107 QIKGSVEDIPVMLVGNKCDET-QREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQEL 165

Query: 223 AKEIYEKIQE 232
                 +   
Sbjct: 166 LTLETRRNMS 175

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 83.8 bits (208), Expect = 4e-20
 Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62
           +ML+GNK D   +REV   E +  A+E    FMETSAK+  NV+E F +       +   
Sbjct: 117 VMLVGNKCDET-QREVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETRRNMS 175

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score =  170 bits (434), Expect = 9e-54
 Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 5/129 (3%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
              T+D + + L++ DTA  +  R+  R Y   A   L+VY +  R++F+  +++LE   
Sbjct: 60  SEETVDHQPVHLRVMDTADLDTPRNCER-YLNWAHAFLVVYSVDSRQSFDSSSSYLELLA 118

Query: 165 QH---SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL-ATNVEEAFI 220
            H   +  ++  +L+GNK D+   R+V K EG   A   G +F E SA L   +V+  F 
Sbjct: 119 LHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFH 178

Query: 221 DTAKEIYEK 229
           +  +E   +
Sbjct: 179 EAVREARRE 187

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 85.7 bits (213), Expect = 6e-21
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 1/60 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL-ATNVEEAFIDTAKEIYEK 59
           +  +L+GNK D+   R+V K EG   A   G +F E SA L   +V+  F +  +E   +
Sbjct: 128 IPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREARRE 187

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score =  170 bits (432), Expect = 2e-53
 Identities = 42/129 (32%), Positives = 72/129 (55%), Gaps = 2/129 (1%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E   
Sbjct: 43  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIK 102

Query: 164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           R   + ++ ++L+GNK DL + R V  ++ +  AR +G+ F+ETSAK    V++AF    
Sbjct: 103 RVKDSEDVPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLV 161

Query: 224 KEIYEKIQE 232
           +EI +  ++
Sbjct: 162 REIRKHKEK 170

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 82.3 bits (204), Expect = 1e-19
 Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE 62
           ++L+GNK DL +R  V  ++ +  AR +G+ F+ETSAK    V++AF    +EI +  ++
Sbjct: 112 MVLVGNKCDLPSR-TVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK 170

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score =  168 bits (428), Expect = 8e-53
 Identities = 39/135 (28%), Positives = 63/135 (46%), Gaps = 6/135 (4%)

Query: 99  GVEFGARMITIDGKQ---IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH 155
           G +   R + +DG+    I L +W+  G+  +  +     +     L+VY IT R +F  
Sbjct: 41  GEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEK 98

Query: 156 LTTWLED-ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATN 214
            +       R     ++ I+L+GNKSDL   REV   EG   A      F+ETSA +  N
Sbjct: 99  ASELRIQLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHN 158

Query: 215 VEEAFIDTAKEIYEK 229
           V+E F    +++  +
Sbjct: 159 VKELFEGIVRQVRLR 173

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 83.9 bits (208), Expect = 4e-20
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           + I+L+GNKSDL   REV   EG   A      F+ETSA +  NV+E F    +++  +
Sbjct: 115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLR 173

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score =  168 bits (427), Expect = 1e-52
 Identities = 43/126 (34%), Positives = 70/126 (55%), Gaps = 2/126 (1%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  +
Sbjct: 60  KQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIK 119

Query: 165 QHSNSNMV-IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
           +  +S+ V ++L+GNK DL   R V  ++    A+ +G+ F+ETSAK    VE+AF    
Sbjct: 120 RVKDSDDVPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLV 178

Query: 224 KEIYEK 229
           +EI + 
Sbjct: 179 REIRQY 184

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 81.9 bits (203), Expect = 2e-19
 Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 1/57 (1%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           ++L+GNK DL  R  V  ++    A+ +G+ F+ETSAK    VE+AF    +EI + 
Sbjct: 129 MVLVGNKCDLPTR-TVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQY 184

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score =  164 bits (416), Expect = 4e-51
 Identities = 30/142 (21%), Positives = 59/142 (41%), Gaps = 9/142 (6%)

Query: 99  GVEFGARMITIDGKQ---IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRET-FN 154
           G++     I I  K+   + L +WD AG+E F S    +    A  L VYD+++ +   +
Sbjct: 38  GIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVD 97

Query: 155 HLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVK---KEEGEVFAREHGLVF-METSAK 210
            +  WL + +  + S+  ++L+G   D+   ++ K    +  +    + G     +    
Sbjct: 98  AMKPWLFNIKARA-SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFV 156

Query: 211 LATNVEEAFIDTAKEIYEKIQE 232
            AT   +A     K I  +   
Sbjct: 157 NATEESDALAKLRKTIINESLN 178

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 57.8 bits (140), Expect = 1e-10
 Identities = 10/65 (15%), Positives = 22/65 (33%), Gaps = 4/65 (6%)

Query: 2   VIMLIGNKSDLDARREVK---KEEGEVFAREHGLVF-METSAKLATNVEEAFIDTAKEIY 57
            ++L+G   D+   ++ K    +  +    + G     +     AT   +A     K I 
Sbjct: 114 PVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTII 173

Query: 58  EKIQE 62
            +   
Sbjct: 174 NESLN 178

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score =  152 bits (386), Expect = 1e-46
 Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 9/132 (6%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-A 163
           + I +DG+   L I D  G    +     +       + V+ +    +F  +  +     
Sbjct: 58  KEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLC 112

Query: 164 RQHSNSNMVIMLIGNKSDLDA--RREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFI 220
              + S + ++L+G +  + A   R +        + +     + ET A    NVE  F 
Sbjct: 113 SFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQ 172

Query: 221 DTAKEIYEKIQE 232
           D A+++    ++
Sbjct: 173 DVAQKVVALRKK 184

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 76.4 bits (189), Expect = 2e-17
 Identities = 13/63 (20%), Positives = 27/63 (42%), Gaps = 3/63 (4%)

Query: 3   IMLIGNKSDLDA--RREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDTAKEIYEK 59
           ++L+G +  + A   R +        + +     + ET A    NVE  F D A+++   
Sbjct: 122 MVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL 181

Query: 60  IQE 62
            ++
Sbjct: 182 RKK 184

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score =  142 bits (360), Expect = 8e-43
 Identities = 18/134 (13%), Positives = 46/134 (34%), Gaps = 11/134 (8%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + +DG+   + I + AG    +     +   A   + V+ +    +F  ++       
Sbjct: 45  KEMLVDGQTHLVLIREEAGAPDAK-----FSGWADAVIFVFSLEDENSFQAVSRLHGQLS 99

Query: 165 QH-----SNSNMVIMLIGNKSDLDARREVKKEEGEVF-AREHGLVFMETSAKLATNVEEA 218
                      + ++   ++    + R V         A      + ET A    NV+  
Sbjct: 100 SLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRV 159

Query: 219 FIDTAKEIYEKIQE 232
           F + A+++    ++
Sbjct: 160 FQEVAQKVVTLRKQ 173

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 66.9 bits (164), Expect = 6e-14
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 1/63 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVF-AREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           + ++   ++    + R V         A      + ET A    NV+  F + A+++   
Sbjct: 111 LALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTL 170

Query: 60  IQE 62
            ++
Sbjct: 171 RKQ 173

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score =  150 bits (381), Expect = 1e-42
 Identities = 19/122 (15%), Positives = 43/122 (35%), Gaps = 4/122 (3%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
             + K+     WD  GQE   +  + +   ++  +L+ D     T ++   WL    ++ 
Sbjct: 92  DDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSR---TDSNKHYWLRHIEKYG 148

Query: 168 NSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 227
                ++++ NK D +    +++++           F   S K    VE         + 
Sbjct: 149 G-KSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVL 207

Query: 228 EK 229
             
Sbjct: 208 HP 209

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 69.2 bits (169), Expect = 8e-14
 Identities = 8/58 (13%), Positives = 19/58 (32%)

Query: 2   VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
            ++++ NK D +    +++++           F   S K    VE         +   
Sbjct: 152 PVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLHP 209

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score =  120 bits (302), Expect = 6e-34
 Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 6/121 (4%)

Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQ 165
           +    ++  L +WDTAGQE +  +    Y  +   LL + +  R +F N  T W  + + 
Sbjct: 64  MKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKH 123

Query: 166 HSNSNMVIMLIGNKSDL--DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDT 222
           +       +L+G K DL  D   +V K+EG+   ++ G V ++E S+     + E F + 
Sbjct: 124 YI-DTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF-EK 181

Query: 223 A 223
           +
Sbjct: 182 S 182

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 58.5 bits (142), Expect = 9e-11
 Identities = 16/54 (29%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 3   IMLIGNKSDL--DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDTA 53
            +L+G K DL  D   +V K+EG+   ++ G V ++E S+     + E F + +
Sbjct: 130 TVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVF-EKS 182

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score =  110 bits (278), Expect = 1e-30
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 14/130 (10%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDAR 164
            + ++G  + L +WDTAGQE +  +    YRGA   +L + +  + ++ N    W+ + +
Sbjct: 48  NVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELK 107

Query: 165 QHSNSNMVIMLIGNKSDL----------DARREVKKEEGEVFAREHGLV-FMETSAKLAT 213
            ++   + I+L+G K DL               +   +GE   +  G   ++E S+K   
Sbjct: 108 HYA-PGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQE 166

Query: 214 NVEEAFIDTA 223
           NV+  F D A
Sbjct: 167 NVKGVF-DAA 175

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 50.1 bits (120), Expect = 7e-08
 Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 12/62 (19%)

Query: 3   IMLIGNKSDL----------DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFID 51
           I+L+G K DL               +   +GE   +  G   ++E S+K   NV+  F D
Sbjct: 115 IVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVF-D 173

Query: 52  TA 53
            A
Sbjct: 174 AA 175

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score =  109 bits (274), Expect = 1e-29
 Identities = 39/127 (30%), Positives = 67/127 (52%), Gaps = 12/127 (9%)

Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQ 165
           + +DG+ + L +WDTAGQE +  +    YRGA   +L + +  + ++ N L  W+ + R+
Sbjct: 50  VAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRR 109

Query: 166 HSNSNMVIMLIGNKSDL--------DARREVKKEEGEVFAREHGLV-FMETSAKLATNVE 216
            +  N+ I+L+G K DL        D    +   +GE   ++ G   ++E S+K   NV+
Sbjct: 110 FA-PNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVK 168

Query: 217 EAFIDTA 223
             F DTA
Sbjct: 169 AVF-DTA 174

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 53.5 bits (129), Expect = 6e-09
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 10/60 (16%)

Query: 3   IMLIGNKSDL--------DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDTA 53
           I+L+G K DL        D    +   +GE   ++ G   ++E S+K   NV+  F DTA
Sbjct: 116 IVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVF-DTA 174

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score =  109 bits (274), Expect = 1e-29
 Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 16/132 (12%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDAR 164
            + + GK + L IWDTAGQ+ +  +   +Y  A+  LL +D+T   +F N    W  +  
Sbjct: 74  NLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVN 133

Query: 165 QHSNSNMVIMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKL 211
                 + I+++G K+DL   +             V    G+  AR  G V ++E SA+L
Sbjct: 134 HF-CKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARL 192

Query: 212 ATNVEEAFIDTA 223
             NV   F   A
Sbjct: 193 HDNVHAVF-QEA 203

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 48.6 bits (116), Expect = 3e-07
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 14/64 (21%)

Query: 3   IMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
           I+++G K+DL   +             V    G+  AR  G V ++E SA+L  NV   F
Sbjct: 141 IIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 200

Query: 50  IDTA 53
              A
Sbjct: 201 -QEA 203

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score =  105 bits (265), Expect = 2e-28
 Identities = 40/137 (29%), Positives = 60/137 (43%), Gaps = 16/137 (11%)

Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTW 159
           E     I +DGKQ++L +WDTAGQE +  +    Y      L+ + I   ++  N    W
Sbjct: 60  ENYIADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKW 119

Query: 160 LEDARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FME 206
             + +     N+ I+L+GNK DL              +  V+ EEG   A       ++E
Sbjct: 120 TPEVKHFC-PNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLE 178

Query: 207 TSAKLATNVEEAFIDTA 223
            SAK    V E F + A
Sbjct: 179 CSAKTKEGVREVF-EMA 194

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 47.1 bits (112), Expect = 9e-07
 Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 14/64 (21%)

Query: 3   IMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
           I+L+GNK DL              +  V+ EEG   A       ++E SAK    V E F
Sbjct: 132 IILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVF 191

Query: 50  IDTA 53
            + A
Sbjct: 192 -EMA 194

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score =  107 bits (268), Expect = 2e-28
 Identities = 28/164 (17%), Positives = 53/164 (32%), Gaps = 48/164 (29%)

Query: 110 DGKQIKLQIW-------DTAGQEAFRSITRSYYRGAA----------------------- 139
           D  + K+ I        D   Q    +  + Y + AA                       
Sbjct: 91  DCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQD 150

Query: 140 --------------GALLVYDITR--RETFNHLTTWLEDARQH-SNSNMVIMLIGNKSDL 182
                         G LL  D++R     F+    ++ +     + +   I+++  K D 
Sbjct: 151 FEQKQMPDGKLLVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDE 210

Query: 183 DARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
              R ++       +++  L  +ETSA+   NV+ AF    + I
Sbjct: 211 GVERYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLI 253

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens} Length = 255

 Score = 79.3 bits (195), Expect = 6e-18
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 3   IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           I+++  K D    R ++       +++  L  +ETSA+   NV+ AF    + I
Sbjct: 201 IVVVLTKCDEGVERYIRDAHTFALSKK-NLQVVETSARSNVNVDLAFSTLVQLI 253

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score =  105 bits (263), Expect = 4e-28
 Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 16/132 (12%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDAR 164
            I +DGKQ++L +WDTAGQE +  +    Y      L+ + +   ++  N    W+ + +
Sbjct: 65  DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVK 124

Query: 165 QHSNSNMVIMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKL 211
                N+ I+L+ NK DL +               V+ ++G   A       ++E SAK 
Sbjct: 125 HFC-PNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKT 183

Query: 212 ATNVEEAFIDTA 223
              V E F +TA
Sbjct: 184 KEGVREVF-ETA 194

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 47.4 bits (113), Expect = 8e-07
 Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 14/64 (21%)

Query: 3   IMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
           I+L+ NK DL +               V+ ++G   A       ++E SAK    V E F
Sbjct: 132 IILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVF 191

Query: 50  IDTA 53
            +TA
Sbjct: 192 -ETA 194

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score =  104 bits (260), Expect = 1e-27
 Identities = 36/137 (26%), Positives = 58/137 (42%), Gaps = 16/137 (11%)

Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTW 159
           +  +  + +DGK + L +WDTAGQE +  +    Y      L+ + +    +F N    W
Sbjct: 65  DNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKW 124

Query: 160 LEDARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FME 206
             + R H   N  I+L+G K DL                 +   +G   A+E G V ++E
Sbjct: 125 YPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLE 183

Query: 207 TSAKLATNVEEAFIDTA 223
            SA     ++  F D A
Sbjct: 184 CSALTQRGLKTVF-DEA 199

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 47.1 bits (112), Expect = 1e-06
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 14/64 (21%)

Query: 3   IMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
           I+L+G K DL                 +   +G   A+E G V ++E SA     ++  F
Sbjct: 137 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 196

Query: 50  IDTA 53
            D A
Sbjct: 197 -DEA 199

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score =  101 bits (253), Expect = 6e-27
 Identities = 36/138 (26%), Positives = 59/138 (42%), Gaps = 16/138 (11%)

Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTT 158
            +  +  + +DGK + L +WDTAGQE +  +    Y     +L+ + +    +F N    
Sbjct: 39  FDNYSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAK 98

Query: 159 WLEDARQHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FM 205
           W  + R H   N  I+L+G K DL                 +   +G   A+E G V ++
Sbjct: 99  WYPEVRHHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYL 157

Query: 206 ETSAKLATNVEEAFIDTA 223
           E SA     ++  F D A
Sbjct: 158 ECSALTQRGLKTVF-DEA 174

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 45.5 bits (108), Expect = 3e-06
 Identities = 17/64 (26%), Positives = 26/64 (40%), Gaps = 14/64 (21%)

Query: 3   IMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
           I+L+G K DL                 +   +G   A+E G V ++E SA     ++  F
Sbjct: 112 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 171

Query: 50  IDTA 53
            D A
Sbjct: 172 -DEA 174

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 98.2 bits (245), Expect = 1e-25
 Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 17/133 (12%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDAR 164
              ID ++I+L +WDT+G   + ++    Y  +   L+ +DI+R ET  + L  W  + +
Sbjct: 47  SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 106

Query: 165 QHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKL 211
           +    N  ++L+G KSDL              +  V  ++G   A++ G   ++E SA  
Sbjct: 107 EFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 165

Query: 212 ATN-VEEAFIDTA 223
           + N V + F   A
Sbjct: 166 SENSVRDIF-HVA 177

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 42.0 bits (99), Expect = 4e-05
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 15/65 (23%)

Query: 3   IMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLATN-VEEA 48
           ++L+G KSDL              +  V  ++G   A++ G   ++E SA  + N V + 
Sbjct: 114 MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 173

Query: 49  FIDTA 53
           F   A
Sbjct: 174 F-HVA 177

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 98.3 bits (245), Expect = 2e-25
 Identities = 35/132 (26%), Positives = 62/132 (46%), Gaps = 16/132 (12%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH-LTTWLEDAR 164
           ++++DG+ ++LQ+ DTAGQ+ F  +    Y      LL + +    +F +    W+ + R
Sbjct: 60  VVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIR 119

Query: 165 QHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKL 211
            H      I+L+G +SDL               + V +E  ++ A E     ++E SA  
Sbjct: 120 CHC-PKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALT 178

Query: 212 ATNVEEAFIDTA 223
             N++E F D A
Sbjct: 179 QKNLKEVF-DAA 189

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 46.6 bits (111), Expect = 1e-06
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 14/64 (21%)

Query: 3   IMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
           I+L+G +SDL               + V +E  ++ A E     ++E SA    N++E F
Sbjct: 127 IILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVF 186

Query: 50  IDTA 53
            D A
Sbjct: 187 -DAA 189

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 97.1 bits (242), Expect = 5e-25
 Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 17/133 (12%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDAR 164
              ID ++I+L +WDT+G   + ++    Y  +   L+ +DI+R ET  + L  W  + +
Sbjct: 68  SFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQ 127

Query: 165 QHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKL 211
           +    N  ++L+G KSDL              +  V  ++G   A++ G   ++E SA  
Sbjct: 128 EFC-PNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQ 186

Query: 212 ATN-VEEAFIDTA 223
           + N V + F   A
Sbjct: 187 SENSVRDIF-HVA 198

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 42.0 bits (99), Expect = 5e-05
 Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 15/65 (23%)

Query: 3   IMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLATN-VEEA 48
           ++L+G KSDL              +  V  ++G   A++ G   ++E SA  + N V + 
Sbjct: 135 MLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDI 194

Query: 49  FIDTA 53
           F   A
Sbjct: 195 F-HVA 198

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 93.4 bits (232), Expect = 2e-23
 Identities = 31/133 (23%), Positives = 62/133 (46%), Gaps = 17/133 (12%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDAR 164
            +  + ++++L +WDT+G   + ++    Y  +   LL +DI+R ET  + L  W  +  
Sbjct: 67  CLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEIL 126

Query: 165 QHSNSNMVIMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKL 211
            +   +  ++LIG K+DL              +  +  E+G   A++ G   ++E SA  
Sbjct: 127 DYC-PSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFT 185

Query: 212 A-TNVEEAFIDTA 223
           +  ++   F  TA
Sbjct: 186 SEKSIHSIF-RTA 197

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 38.7 bits (90), Expect = 6e-04
 Identities = 16/65 (24%), Positives = 29/65 (44%), Gaps = 15/65 (23%)

Query: 3   IMLIGNKSDL------------DARREVKKEEGEVFAREHGLV-FMETSAKLA-TNVEEA 48
           ++LIG K+DL              +  +  E+G   A++ G   ++E SA  +  ++   
Sbjct: 134 VLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSI 193

Query: 49  FIDTA 53
           F  TA
Sbjct: 194 F-RTA 197

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 92.6 bits (230), Expect = 2e-23
 Identities = 33/132 (25%), Positives = 63/132 (47%), Gaps = 16/132 (12%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH-LTTWLEDAR 164
            +T+ GKQ  L ++DTAGQE +  +    Y      L+ + +    +F +    W+ + +
Sbjct: 58  SVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELK 117

Query: 165 QHSNSNMVIMLIGNKSDL----------DARRE--VKKEEGEVFAREHGLV-FMETSAKL 211
           +++  N+  +LIG + DL          +  +E  +  E+G+  A+E G   ++E SA  
Sbjct: 118 EYA-PNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALT 176

Query: 212 ATNVEEAFIDTA 223
              ++  F D A
Sbjct: 177 QKGLKTVF-DEA 187

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 41.7 bits (98), Expect = 6e-05
 Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 14/64 (21%)

Query: 3   IMLIGNKSDL----------DARRE--VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
            +LIG + DL          +  +E  +  E+G+  A+E G   ++E SA     ++  F
Sbjct: 125 FLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVF 184

Query: 50  IDTA 53
            D A
Sbjct: 185 -DEA 187

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 88.1 bits (218), Expect = 1e-20
 Identities = 35/132 (26%), Positives = 57/132 (43%), Gaps = 16/132 (12%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDAR 164
            + +DGK + L +WDTAG E +  +    Y      L+ + +    +F +    W  + R
Sbjct: 195 NVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVR 254

Query: 165 QHSNSNMVIMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKL 211
            H   N  I+L+G K DL    D   +        +   +G   A+E G V ++E SA  
Sbjct: 255 HHC-PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALT 313

Query: 212 ATNVEEAFIDTA 223
              ++  F D A
Sbjct: 314 QRGLKTVF-DEA 324

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A* Length = 332

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 14/64 (21%)

Query: 3   IMLIGNKSDL----DARRE--------VKKEEGEVFAREHGLV-FMETSAKLATNVEEAF 49
           I+L+G K DL    D   +        +   +G   A+E G V ++E SA     ++  F
Sbjct: 262 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVF 321

Query: 50  IDTA 53
            D A
Sbjct: 322 -DEA 324

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* Length = 198

 Score = 68.6 bits (168), Expect = 2e-14
 Identities = 21/131 (16%), Positives = 45/131 (34%), Gaps = 6/131 (4%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE-----D 162
            + G + +  ++   GQ  + +  +   RG  G + V D        +  +         
Sbjct: 68  EVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLA 127

Query: 163 ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDT 222
               +  ++ I++  NK DL     V +    V   E     +E  A     V E   + 
Sbjct: 128 EYGLTLDDVPIVIQVNKRDLPDALPV-EMVRAVVDPEGKFPVLEAVATEGKGVFETLKEV 186

Query: 223 AKEIYEKIQEG 233
           ++ +  ++  G
Sbjct: 187 SRLVLARVAGG 197

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* Length = 196

 Score = 58.1 bits (140), Expect = 1e-10
 Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 18/122 (14%)

Query: 114 IKLQIWDTAGQEAFRSIT---RSYYRGAAGALLVYDITRR--ETFNHLTTWLEDARQHSN 168
           +  QIWD  GQ  F   T      +RG    + V D      E    L   +  A +  N
Sbjct: 69  VNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKV-N 127

Query: 169 SNMVIMLIGNKSDL-------DARREVKKEEGEVFARE----HGLVFMETSAKLATNVEE 217
            +M   +  +K D        + +R++ +   +  A        L F  TS    + + E
Sbjct: 128 PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYDHS-IFE 186

Query: 218 AF 219
           AF
Sbjct: 187 AF 188

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* Length = 192

 Score = 55.8 bits (135), Expect = 7e-10
 Identities = 27/116 (23%), Positives = 45/116 (38%), Gaps = 4/116 (3%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
           T++ K I   +WD  GQ+  R + R Y++   G + V D   RE        L+   Q  
Sbjct: 67  TVEYKNICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQED 126

Query: 168 N-SNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
              + V+++  NK D+       E+  + G    R        T A   T + +  
Sbjct: 127 ELRDAVLLVFANKQDMPNAMPVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGL 182

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* Length = 171

 Score = 55.3 bits (134), Expect = 9e-10
 Identities = 25/123 (20%), Positives = 46/123 (37%), Gaps = 18/123 (14%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
           T+  K +K Q+WD  G  + R   R YY      + V D   R+        +  ++   
Sbjct: 45  TVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRD-------RIGISKSEL 97

Query: 166 ------HSNSNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
                       ++++  NK D++      E+    G    ++      +TSA   T ++
Sbjct: 98  VAMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLD 157

Query: 217 EAF 219
           EA 
Sbjct: 158 EAM 160

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} Length = 190

 Score = 55.0 bits (133), Expect = 1e-09
 Identities = 19/118 (16%), Positives = 40/118 (33%), Gaps = 6/118 (5%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH- 166
                 +   ++D +GQ  +R++   YY+     + V D + R         L+    H 
Sbjct: 61  KFKSSSLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHP 120

Query: 167 --SNSNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
              +  + I+   NK DL       +V +       ++       + A     ++E  
Sbjct: 121 DIKHRRIPILFFANKMDLRDAVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGV 178

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} Length = 189

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 24/123 (19%), Positives = 45/123 (36%), Gaps = 18/123 (14%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH- 166
           T+  K I  ++WD  GQ   R   R Y+      + V D T R+        +  A+   
Sbjct: 60  TLQYKNISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRD-------RMGVAKHEL 112

Query: 167 -------SNSNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
                       ++++  NK DL    +  E+ ++ G           +++S+K    + 
Sbjct: 113 YALLDEDELRKSLLLIFANKQDLPDAASEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLV 172

Query: 217 EAF 219
           E  
Sbjct: 173 EGM 175

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... Length = 164

 Score = 53.3 bits (129), Expect = 3e-09
 Identities = 29/116 (25%), Positives = 45/116 (38%), Gaps = 4/116 (3%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
           T++ K I   +WD  GQ+  R + R Y++   G + V D   RE  N     L       
Sbjct: 38  TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAED 97

Query: 168 N-SNMVIMLIGNKSDL-DAR--REVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
              + V+++  NK DL +A    E+  + G    R        T A     + E  
Sbjct: 98  ELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGL 153

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* Length = 186

 Score = 53.8 bits (130), Expect = 4e-09
 Identities = 26/123 (21%), Positives = 48/123 (39%), Gaps = 18/123 (14%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
           T++ +  KL IWD  GQ++ RS  R+Y+    G + V D   R+        ++D ++  
Sbjct: 56  TLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQ-------RMQDCQREL 108

Query: 166 ------HSNSNMVIMLIGNKSDL-DAR--REVKKEEGEVFAREHGLVFMETSAKLATNVE 216
                    +   +++  NK DL  A     +++       R H       SA    ++ 
Sbjct: 109 QSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLL 168

Query: 217 EAF 219
              
Sbjct: 169 PGI 171

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* Length = 188

 Score = 53.3 bits (129), Expect = 5e-09
 Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 18/123 (14%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
            I    + +++WD  GQ  FRS+   Y RG +  + + D   +E        +E ++   
Sbjct: 61  KITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE-------KIEASKNEL 113

Query: 166 ------HSNSNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
                      + ++++GNK DL      +E+ ++      ++  +     S K   N++
Sbjct: 114 HNLLDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNID 173

Query: 217 EAF 219
              
Sbjct: 174 ITL 176

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 187

 Score = 53.0 bits (128), Expect = 6e-09
 Identities = 23/116 (19%), Positives = 41/116 (35%), Gaps = 4/116 (3%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
            I     +  +WD  GQE+ RS   +YY      ++V D T RE  +     L     H 
Sbjct: 54  EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE 113

Query: 168 N-SNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           +     +++  NK D+       E+ +       ++H        A     + +  
Sbjct: 114 DLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 169

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* Length = 181

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 23/116 (19%), Positives = 42/116 (36%), Gaps = 4/116 (3%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS 167
            I     +  +WD  GQE+ RS   +YY      ++V D T RE  +     L     H 
Sbjct: 59  EIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHE 118

Query: 168 N-SNMVIMLIGNKSDL-DAR--REVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
           +     +++  NK D+ +     E+ +       ++H        A     + +  
Sbjct: 119 DLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGL 174

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 183

 Score = 52.3 bits (126), Expect = 1e-08
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 18/123 (14%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
           T+  K +KL +WD  GQ + R   R YY   A  + V D T ++        +  A +  
Sbjct: 56  TLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKD-------RMSTASKEL 108

Query: 166 ------HSNSNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
                     +  +++  NK D     +  EV KE   V  ++     + +SA     + 
Sbjct: 109 HLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGIT 168

Query: 217 EAF 219
           E  
Sbjct: 169 EGL 171

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* Length = 181

 Score = 51.4 bits (124), Expect = 2e-08
 Identities = 25/123 (20%), Positives = 42/123 (34%), Gaps = 18/123 (14%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
           ++  +  KL +WD  GQ   R   RSY+      + V D   R+         E+  Q  
Sbjct: 54  SVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRK-------RFEETGQEL 106

Query: 166 ------HSNSNMVIMLIGNKSDLD---ARREVKKEEGEVFAREHGLVFMETSAKLATNVE 216
                    S + +++  NK DL       E+ +       R+        SA     V+
Sbjct: 107 TELLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQ 166

Query: 217 EAF 219
           +  
Sbjct: 167 DGM 169

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens} Length = 329

 Score = 50.7 bits (121), Expect = 1e-07
 Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 15/83 (18%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
           T++ K I   +WD  GQ+  R + R Y++   G + V D   RE        + +AR+  
Sbjct: 203 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRE-------RVNEAREEL 255

Query: 166 ------HSNSNMVIMLIGNKSDL 182
                     + V+++  NK DL
Sbjct: 256 MRMLAEDELRDAVLLVFANKQDL 278

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* Length = 190

 Score = 49.5 bits (119), Expect = 1e-07
 Identities = 15/83 (18%), Positives = 29/83 (34%), Gaps = 15/83 (18%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
            +    IK   +D  G    R + + Y+    G + + D    E         ++AR   
Sbjct: 61  ELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPE-------RFDEARVEL 113

Query: 166 ------HSNSNMVIMLIGNKSDL 182
                     ++  +++GNK D 
Sbjct: 114 DALFNIAELKDVPFVILGNKIDA 136

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* Length = 198

 Score = 48.0 bits (115), Expect = 4e-07
 Identities = 14/83 (16%), Positives = 32/83 (38%), Gaps = 15/83 (18%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-- 165
            +    +    +D  G    R + ++Y     G + + D    E        L ++++  
Sbjct: 63  ELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHE-------RLLESKEEL 115

Query: 166 ------HSNSNMVIMLIGNKSDL 182
                  + +N+ I+++GNK D 
Sbjct: 116 DSLMTDETIANVPILILGNKIDR 138

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} Length = 307

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 18/92 (19%), Positives = 38/92 (41%), Gaps = 12/92 (13%)

Query: 111 GKQIKLQIWDTAGQEAF-----RSITRSYYRGAAGALLVYDITRRETFNHLTTW---LED 162
              + L +WD  GQ+ F            ++     + V+D+   E    +  +   L+ 
Sbjct: 49  LGNMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQ 108

Query: 163 ARQHSNSNMVIMLIGNKSDL---DARREVKKE 191
            R++ + +  I ++ +K DL   D R E+ + 
Sbjct: 109 LRKY-SPDAKIFVLLHKMDLVQLDKREELFQI 139

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} Length = 193

 Score = 41.3 bits (97), Expect = 8e-05
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 9/84 (10%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGAL--LVYDI-------TRRETFNHLTT 158
             D     + + D  G    R     Y +  A  +  L++ +           T   L  
Sbjct: 85  AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVD 144

Query: 159 WLEDARQHSNSNMVIMLIGNKSDL 182
            L        + + I++  NKS+L
Sbjct: 145 ILSITESSCENGIDILIACNKSEL 168

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 218

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 15/84 (17%), Positives = 27/84 (32%), Gaps = 9/84 (10%)

Query: 108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGAL--LVYDI-------TRRETFNHLTT 158
             D     + + D  G    R     Y +  A  +  L++ +           T   L  
Sbjct: 49  AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVD 108

Query: 159 WLEDARQHSNSNMVIMLIGNKSDL 182
            L        + + I++  NKS+L
Sbjct: 109 ILSITESSCENGIDILIACNKSEL 132

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 22/150 (14%), Positives = 43/150 (28%), Gaps = 29/150 (19%)

Query: 107 ITIDGKQIKLQIWDTAG-------------QEAFRSITRSYYRGAAGALLVYDITRRETF 153
              D      ++ DTAG             + +   +       A   L + D+      
Sbjct: 276 FIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAE-----ADLILYLLDLGTERLD 328

Query: 154 NHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT 213
           + LT   E    H  +  +   + NK D  A  +              +     SA    
Sbjct: 329 DELTEIRELKAAHPAAKFLT--VANKLDRAANADALIRAIADGTGTEVI---GISALNGD 383

Query: 214 NV---EEAFIDTAKEIYEKIQEGVFDITNE 240
            +   ++   D  K + +  +  V  +T+ 
Sbjct: 384 GIDTLKQHMGDLVKNLDKLHEASVL-VTSL 412

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.8 bits (92), Expect = 5e-04
 Identities = 37/245 (15%), Positives = 78/245 (31%), Gaps = 66/245 (26%)

Query: 9   KSDLDARREVKKEEGEVFA-REHGLVFMETSAKLATN-VEEAFIDTAKEIYEKIQEGVFD 66
             + D + +V+     + +  E   + M   A   T  +    +   +E+ +K  E V  
Sbjct: 30  VDNFDCK-DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88

Query: 67  ITNE--ANGIKIGPQHSPNNPSLPSGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQ 124
           I  +   + I    +     PS+ +          +E   R+                  
Sbjct: 89  INYKFLMSPI----KTEQRQPSMMTRMY-------IEQRDRLYN--------------DN 123

Query: 125 EAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVI--ML-IGNKSD 181
           + F                 Y+++R + +  L   L + R     N++I  +L  G K+ 
Sbjct: 124 QVFAK---------------YNVSRLQPYLKLRQALLELR--PAKNVLIDGVLGSG-KTW 165

Query: 182 L--DARREVKKE---EGEVF------AREHGLVFMETSAKLATNVEEAF---IDTAKEIY 227
           +  D     K +   + ++F            V +E   KL   ++  +    D +  I 
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSSNIK 224

Query: 228 EKIQE 232
            +I  
Sbjct: 225 LRIHS 229

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.97
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.94
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.94
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.94
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.94
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.94
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.94
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.93
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.93
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.93
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.93
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.93
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.93
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.93
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.93
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.93
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.93
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.93
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.93
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.93
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.93
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.93
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.93
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.93
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.92
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.92
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.92
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.92
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.92
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.92
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.92
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.92
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.92
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.92
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.92
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.92
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.92
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.92
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.92
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.92
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.92
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.92
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.92
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.92
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.92
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.92
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.92
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.92
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.92
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.91
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.91
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.91
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.91
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.91
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.91
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.91
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.91
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.91
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.91
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.91
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.91
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.91
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.91
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.91
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.91
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.91
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.9
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.9
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.9
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.9
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.9
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.9
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.9
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.9
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.9
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.89
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.89
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.89
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.89
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.89
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.89
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.88
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.88
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.88
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.88
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.87
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.87
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.87
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.87
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.86
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.86
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.86
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.85
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.85
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.85
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.85
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.85
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.85
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.76
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.85
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.85
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.84
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.84
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.84
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.84
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.83
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	99.82
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.82
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.81
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.81
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.81
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.8
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.79
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.79
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.78
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.78
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.78
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.76
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.75
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.73
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.72
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.72
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.71
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.71
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.71
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.7
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	99.69
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.68
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.67
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.66
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.65
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.63
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.63
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.62
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.61
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.6
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.6
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.59
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.59
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.59
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.59
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.57
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.56
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.53
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.53
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.52
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.51
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.51
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	99.5
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.5
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.5
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.49
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.48
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.48
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.48
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.48
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.48
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.47
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.47
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.46
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.45
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.44
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.44
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.43
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.42
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.42
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.41
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.4
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.39
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.36
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.36
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	99.36
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.33
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.33
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.3
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.3
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.3
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.29
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.29
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.28
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.24
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.21
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.2
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.2
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.2
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.19
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.17
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.17
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.16
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.16
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.15
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.14
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.14
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.13
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.13
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.12
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.12
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.12
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.11
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.1
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.1
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.1
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.1
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.1
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.1
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.09
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.08
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.08
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.07
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.07
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.06
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.05
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.05
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.05
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.04
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.04
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.04
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.04
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.04
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.03
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.03
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.03
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.02
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.02
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.01
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.01
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.01
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.01
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.01
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.01
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.01
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.0
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.0
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.0
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.99
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.99
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.99
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.98
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	98.98
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.97
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.96
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.96
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	98.96
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	98.95
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.95
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	98.94
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.94
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.94
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.93
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.93
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.92
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.92
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.92
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.92
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.91
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.91
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.91
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.9
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.89
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.89
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.89
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	98.88
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.87
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.87
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.86
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.86
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.84
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.83
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	98.83
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.83
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.83
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.82
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.81
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	98.78
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.76
1wxq_A	397	GTP-binding protein; structural genomics, riken st	98.74
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.74
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	98.71
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	98.69
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.67
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.66
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.64
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.64
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.63
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.63
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	98.61
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.6
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.6
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.57
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	98.56
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	98.54
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.53
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.51
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	98.48
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	98.47
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.47
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	98.46
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	98.46
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.45
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.44
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	98.43
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.42
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.42
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.41
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	98.38
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.38
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	98.38
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.38
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	98.35
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.31
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.31
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	98.3
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	98.29
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	98.28
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.27
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	98.27
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	98.27
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.24
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	98.23
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	98.22
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.22
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.22
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	98.19
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.19
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.15
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	98.15
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	98.14
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	98.11
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	98.09
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	98.09
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	98.06
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.0
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	97.99
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	97.95
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.95
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	97.93
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	97.92
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.9
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.86
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	97.84
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	97.83
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	97.72
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	97.66
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	97.63
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.63
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.62
1nrj_B	218	SR-beta, signal recognition particle receptor beta	97.53
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	97.53
1wb1_A	482	Translation elongation factor SELB; selenocysteine	97.48
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.44
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	97.43
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	97.41
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	97.35
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	97.35
2fh5_B	214	SR-beta, signal recognition particle receptor beta	97.33
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	97.29
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.27
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	97.26
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	97.21
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	97.11
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	97.05
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.02
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	96.98
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	96.92
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	96.91
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	96.91
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	96.9
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	96.89
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	96.84
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	96.82
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	96.78
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	96.78
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.68
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	96.67
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	96.63
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	96.63
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	96.6
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	96.48
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	96.45
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	96.31
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	96.27
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	96.23
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.22
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	96.01
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	95.98
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	95.92
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	95.65
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	95.63
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	95.61
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	95.58
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.49
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	95.46
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	95.44
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	95.43
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	95.31
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	95.3
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	95.15
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	94.91
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	94.7
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	94.66
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	94.62
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	94.57
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	94.32
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	94.18
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	93.51
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	93.14
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	92.95
3llu_A	196	RAS-related GTP-binding protein C; structural geno	92.94
3ea0_A	245	ATPase, para family; alpha-beta-alpha sandwich, st	92.89
1wxq_A	397	GTP-binding protein; structural genomics, riken st	92.73
3cwq_A	209	Para family chromosome partitioning protein; alpha	92.4
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	92.0
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	91.66
3end_A	307	Light-independent protochlorophyllide reductase ir	91.56
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	89.7
3k9g_A	267	PF-32 protein; ssgcid, SBRI, decode biostructures,	89.42
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	89.4
1wcv_1	257	SOJ, segregation protein; ATPase, bacterial, chrom	89.13
3pg5_A	361	Uncharacterized protein; structural genomics, PSI-	88.51
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	88.27
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	87.79
1hyq_A	263	MIND, cell division inhibitor (MIND-1); MINC, FTSZ	87.6
1g3q_A	237	MIND ATPase, cell division inhibitor; alpha-beta-a	87.35
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	87.21
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	86.62
2ph1_A	262	Nucleotide-binding protein; alpha-beta protein, st	86.06
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	85.78
3q9l_A	260	Septum site-determining protein MIND; ATPase, bact	85.77
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	84.46
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	84.23
3kjh_A	254	CO dehydrogenase/acetyl-COA synthase complex, acce	84.03
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	83.29
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	83.23
1cp2_A	269	CP2, nitrogenase iron protein; oxidoreductase; 1.9	83.2
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	81.79
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	81.67

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.97  E-value=3.5e-31  Score=206.63  Aligned_cols=142  Identities=40%  Similarity=0.658  Sum_probs=122.2

Q ss_pred             CCCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC
Q psy13390         89 SGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN  168 (245)
Q Consensus        89 ~~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~  168 (245)
                      .....|.||+|.++..+.+.+++..+.+.||||+|+++|+.+++.|+++++++++|||++++.||+.+..|+..+.....
T Consensus        37 ~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~~~Sf~~i~~~~~~i~~~~~  116 (216)
T 4dkx_A           37 SFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERG  116 (216)
T ss_dssp             CCC----------CEEEEEECSSCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHT
T ss_pred             CCCCCcCCccceEEEEEEEEecceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecchhHHHHHHHHHHHHHHHhcC
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             CCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        169 SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       169 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      +++|++|||||+|+...+.++.+++..++..+++++++|||++|.||+++|+++++.+....
T Consensus       117 ~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~~  178 (216)
T 4dkx_A          117 SDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGME  178 (216)
T ss_dssp             TSSEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC----
T ss_pred             CCCeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhhh
Confidence            88999999999999888899999999999999999999999999999999999999886543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.94  E-value=8e-26  Score=174.70  Aligned_cols=142  Identities=49%  Similarity=0.754  Sum_probs=122.4

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.||+|.++....+.+++..+.+.||||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......++
T Consensus        56 ~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~  135 (201)
T 2hup_A           56 ERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNI  135 (201)
T ss_dssp             ---------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTC
T ss_pred             CCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            46789999999888899999999999999999999999999999999999999999999999999999999988766789


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKIQEG  233 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~  233 (245)
                      |+++|+||+|+...+.+..+++..++...++ +++++||++|.|++++|+++.+.+.+.....
T Consensus       136 piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~  198 (201)
T 2hup_A          136 VQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRHGGP  198 (201)
T ss_dssp             EEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHTTC-
T ss_pred             CEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhcccc
Confidence            9999999999987777888899999999999 8999999999999999999999998765543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.94  E-value=1.8e-25  Score=172.73  Aligned_cols=142  Identities=43%  Similarity=0.751  Sum_probs=129.4

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.||+|.++....+.+++..+.+.||||+|++++..++..+++.+|++++|||++++.+++.+..|+..+......++
T Consensus        53 ~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~  132 (201)
T 2ew1_A           53 PGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKV  132 (201)
T ss_dssp             TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred             CCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            46789999999989999999999999999999999999999999999999999999999999999999999988766689


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEG  233 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~  233 (245)
                      |+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|.++.+.+.+.....
T Consensus       133 piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~  194 (201)
T 2ew1_A          133 ITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQN  194 (201)
T ss_dssp             EEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHC--
T ss_pred             CEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhc
Confidence            99999999999877778888889999889999999999999999999999999998766443

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.94  E-value=2.6e-25  Score=170.26  Aligned_cols=143  Identities=83%  Similarity=1.224  Sum_probs=127.1

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.+|+|.++....+.+++..+.+.||||+|++.+..++..+++++|++++|||++++.+++.+..|+..+......+
T Consensus        47 ~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~  126 (191)
T 2a5j_A           47 QPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN  126 (191)
T ss_dssp             CC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred             CCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence            34567899999988899999999999999999999999999999999999999999999999999999999998876678


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEG  233 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~  233 (245)
                      +|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.++..++
T Consensus       127 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~  189 (191)
T 2a5j_A          127 MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG  189 (191)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTT
T ss_pred             CCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence            999999999999877778888899999999999999999999999999999999998877654

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.94  E-value=5.5e-25  Score=168.83  Aligned_cols=145  Identities=47%  Similarity=0.773  Sum_probs=130.9

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||+|.++....+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+......+
T Consensus        42 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  121 (196)
T 3tkl_A           42 TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASEN  121 (196)
T ss_dssp             CSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred             CCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999998877678


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVF  235 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~~  235 (245)
                      +|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.++......
T Consensus       122 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~~~~~  186 (196)
T 3tkl_A          122 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMGPGAT  186 (196)
T ss_dssp             CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC-----
T ss_pred             CCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhccccc
Confidence            99999999999988788888899999999999999999999999999999999999887765443

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.94  E-value=9.6e-26  Score=171.30  Aligned_cols=143  Identities=48%  Similarity=0.821  Sum_probs=116.2

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.||+|.++....+.+++..+.+.||||+|++.+..++..+++++|++++|||++++.+++.+..|+..+......++
T Consensus        35 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  114 (183)
T 2fu5_C           35 STFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADV  114 (183)
T ss_dssp             -CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             CCCCCcccceeEEEEEEECCEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence            35678999999888888999999999999999999999999999999999999999999999999999999988765689


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCC
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGV  234 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~  234 (245)
                      |+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+++.+.+.++..+..
T Consensus       115 piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~~~~  177 (183)
T 2fu5_C          115 EKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMDKNW  177 (183)
T ss_dssp             EEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHHHHC
T ss_pred             CEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhhccc
Confidence            999999999998777788889999999999999999999999999999999999988766543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.94  E-value=6.4e-25  Score=167.06  Aligned_cols=144  Identities=60%  Similarity=0.928  Sum_probs=131.0

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.||+|.++....+.+++..+.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+......++
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  116 (186)
T 2bme_A           37 DDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQNI  116 (186)
T ss_dssp             TTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred             CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence            45678999999888899999999999999999999999999999999999999999999999999999998887766789


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVF  235 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~~  235 (245)
                      |+++|+||+|+...+.+...++..++...+++++++||++|.|++++|+++.+.+.+...+...
T Consensus       117 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~  180 (186)
T 2bme_A          117 VIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESGEL  180 (186)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSCC-
T ss_pred             cEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhhcCC
Confidence            9999999999977677888889999999999999999999999999999999999987766544

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.93  E-value=1.4e-24  Score=167.59  Aligned_cols=142  Identities=42%  Similarity=0.678  Sum_probs=130.3

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.||+|.++....+.+++..+.+.||||+|++.+..++..+++++|++++|||++++.+++.+..|+..+......+.
T Consensus        35 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  114 (203)
T 1zbd_A           35 PAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNA  114 (203)
T ss_dssp             SCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             CCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence            45788999999888889999999999999999999999999999999999999999999999999999999887765679


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEG  233 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~  233 (245)
                      |+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.++..++
T Consensus       115 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~  176 (203)
T 1zbd_A          115 QVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMSES  176 (203)
T ss_dssp             EEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHHHT
T ss_pred             CEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHHhh
Confidence            99999999999877778888899999999999999999999999999999999998876554

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.93  E-value=1.1e-24  Score=166.42  Aligned_cols=141  Identities=41%  Similarity=0.686  Sum_probs=128.7

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.+|+|.++....+.+.+..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+......+
T Consensus        48 ~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~  127 (189)
T 2gf9_A           48 TPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN  127 (189)
T ss_dssp             CCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred             CCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence            35678899999988888899999999999999999999999999999999999999999999999999999988876567


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ  231 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  231 (245)
                      .|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.++..
T Consensus       128 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  188 (189)
T 2gf9_A          128 AQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKMN  188 (189)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999998777788888999999999999999999999999999999999987653

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.93  E-value=6.8e-25  Score=169.28  Aligned_cols=144  Identities=58%  Similarity=0.920  Sum_probs=125.2

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.||+|.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++.+++.+..|+..+......++
T Consensus        52 ~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  131 (200)
T 2o52_A           52 QDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPNI  131 (200)
T ss_dssp             --------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTC
T ss_pred             ccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence            45678999999888999999999999999999999999999999999999999999999999999999999887766789


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVF  235 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~~  235 (245)
                      |+++|+||+|+...+.+...++..++...+++++++||++|.|++++|+++.+.+.+...+...
T Consensus       132 piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~~~~  195 (200)
T 2o52_A          132 VVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDSGEL  195 (200)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTTSS
T ss_pred             cEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            9999999999987777888888999999999999999999999999999999999987766543

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.93  E-value=9.4e-25  Score=169.08  Aligned_cols=141  Identities=44%  Similarity=0.764  Sum_probs=129.4

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||+|.++....+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+......+
T Consensus        34 ~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~  113 (206)
T 2bcg_Y           34 TNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATST  113 (206)
T ss_dssp             CTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT
T ss_pred             CCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence            34678999999988899999999999999999999999999999999999999999999999999999999998876678


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ  231 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  231 (245)
                      .|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|+++.+.+.+...
T Consensus       114 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  174 (206)
T 2bcg_Y          114 VLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS  174 (206)
T ss_dssp             CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence            9999999999998777788888999999999999999999999999999999999977654

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.93  E-value=1.5e-24  Score=163.81  Aligned_cols=138  Identities=62%  Similarity=1.035  Sum_probs=126.4

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.+|+|.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+......+
T Consensus        41 ~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  120 (179)
T 1z0f_A           41 MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN  120 (179)
T ss_dssp             CSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred             CCCCCCccceEEEEEEEEECCeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCC
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999988877678


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      .|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.+
T Consensus       121 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  178 (179)
T 1z0f_A          121 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIYQ  178 (179)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            9999999999998777788889999999999999999999999999999999988753

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.93  E-value=1.7e-24  Score=165.88  Aligned_cols=141  Identities=48%  Similarity=0.804  Sum_probs=129.1

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.+|+|.++....+.+++..+.+.||||+|++++..++..+++++|++|+|||++++.+++.+..|+..+......++
T Consensus        52 ~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~  131 (193)
T 2oil_A           52 HDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEATI  131 (193)
T ss_dssp             SSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTC
T ss_pred             CCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            45688999999888899999999999999999999999999999999999999999999999999999998887765689


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE  232 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  232 (245)
                      |+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.++..+
T Consensus       132 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  192 (193)
T 2oil_A          132 VVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKVSK  192 (193)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred             eEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhc
Confidence            9999999999987677788889999999999999999999999999999999999887654

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.93  E-value=1.5e-24  Score=164.19  Aligned_cols=138  Identities=41%  Similarity=0.716  Sum_probs=125.7

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.+|+|.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+.....+++
T Consensus        39 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  118 (181)
T 2efe_B           39 EFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTNQASFERAKKWVQELQAQGNPNM  118 (181)
T ss_dssp             TTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             CcCCCCceeEEEEEEEEECCEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            45678999999989999999999999999999999999999999999999999999999999999999999988766689


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      |+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+.
T Consensus       119 p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  176 (181)
T 2efe_B          119 VMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPRV  176 (181)
T ss_dssp             EEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC--
T ss_pred             cEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence            9999999999987777888899999999999999999999999999999999887554

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=2.2e-25  Score=170.75  Aligned_cols=142  Identities=39%  Similarity=0.694  Sum_probs=129.8

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||+|.++....+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+......+
T Consensus        49 ~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  128 (191)
T 3dz8_A           49 TPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN  128 (191)
T ss_dssp             CCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred             CcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence            35677899999999999999888999999999999999999999999999999999999999999999999998877678


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE  232 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  232 (245)
                      +|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.++..+
T Consensus       129 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  190 (191)
T 3dz8_A          129 AQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKMSD  190 (191)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC--
T ss_pred             CCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhccC
Confidence            99999999999987778888999999999999999999999999999999999999876543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.8e-24  Score=163.62  Aligned_cols=142  Identities=40%  Similarity=0.691  Sum_probs=129.5

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||+|.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+.... .+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~  113 (181)
T 3tw8_B           35 SGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNC-DD  113 (181)
T ss_dssp             --CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC-TT
T ss_pred             CCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CC
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999988766 57


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEG  233 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~  233 (245)
                      +|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+...+.
T Consensus       114 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~  176 (181)
T 3tw8_B          114 VCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKKDN  176 (181)
T ss_dssp             SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhhhh
Confidence            999999999999877778888899999999999999999999999999999999998876543

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.93  E-value=2.1e-24  Score=161.55  Aligned_cols=135  Identities=41%  Similarity=0.722  Sum_probs=124.0

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.+|+|.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+.....+++
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  112 (170)
T 1r2q_A           33 EFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASPNI  112 (170)
T ss_dssp             TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             CCCCCccceEEEEEEEEECCEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            45678999999888999999999999999999999999999999999999999999999999999999999888765789


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      |+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+
T Consensus       113 ~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          113 VIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             cEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            9999999999977677788888999999999999999999999999999998765

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=1.3e-24  Score=164.38  Aligned_cols=138  Identities=44%  Similarity=0.776  Sum_probs=118.5

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.||+|.++....+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+......++
T Consensus        38 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  117 (180)
T 2g6b_A           38 GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDV  117 (180)
T ss_dssp             CCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred             CCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCC
Confidence            35788999999888888999999999999999999999999999999999999999999999999999999888765689


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      |+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.+.
T Consensus       118 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          118 ALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKRR  175 (180)
T ss_dssp             EEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             cEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999987777888888999988999999999999999999999999988643

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.2e-25  Score=172.78  Aligned_cols=146  Identities=47%  Similarity=0.799  Sum_probs=120.1

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.||+|.++....+.+++..+.+.||||+|+++|..++..+++.+|++|+|||++++.+++.+..|+..+......++
T Consensus        40 ~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~  119 (223)
T 3cpj_B           40 MDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISKSSSYENCNHWLSELRENADDNV  119 (223)
T ss_dssp             C------CCSEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--C
T ss_pred             CCCCCcccceeEEEEEEECCEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCC
Confidence            45678999999888899999999999999999999999999999999999999999999999999999999987765679


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCCCCC
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDI  237 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~~~~  237 (245)
                      |++||+||+|+...+.+..+++..++...+++++++||++|.|++++|+++.+.+.+.....+..+
T Consensus       120 piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~~~~~~  185 (223)
T 3cpj_B          120 AVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVSKHQMDL  185 (223)
T ss_dssp             EEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC-------
T ss_pred             eEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhhhcccCc
Confidence            999999999998777788888999999999999999999999999999999999987666655443

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.93  E-value=1e-24  Score=163.44  Aligned_cols=136  Identities=36%  Similarity=0.668  Sum_probs=117.9

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.||+|.++....+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+......++
T Consensus        33 ~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  112 (170)
T 1z08_A           33 DKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNEI  112 (170)
T ss_dssp             SSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred             cCCCCccceEEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence            45678999999888888899999999999999999999999999999999999999999999999999998877655679


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      |+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.
T Consensus       113 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          113 CLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             eEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence            99999999999877778888899999999999999999999999999999998875

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.93  E-value=2.8e-24  Score=160.82  Aligned_cols=135  Identities=39%  Similarity=0.722  Sum_probs=123.3

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.||+|.++....+.+++..+.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+......++
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  109 (170)
T 1ek0_A           30 ENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDI  109 (170)
T ss_dssp             TTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             CCCCCccceeEEEEEEEECCEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCChHHHHHHHHHHHHHHHhcCCCC
Confidence            45778999999888999999999999999999999999999999999999999999999999999999999888766789


Q ss_pred             eEEEEEeCCCCccC---cccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDAR---REVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       172 piivv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      |+++|+||+|+...   +.+..++...++...+++++++||++|.|++++|+++.+.+
T Consensus       110 piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          110 IIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             EEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             cEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999755   56788888889988999999999999999999999998765

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.3e-24  Score=166.55  Aligned_cols=137  Identities=43%  Similarity=0.779  Sum_probs=122.6

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.||+|.++....+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+......++
T Consensus        53 ~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~  132 (192)
T 2il1_A           53 EACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDA  132 (192)
T ss_dssp             ----CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred             cCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999998887766689


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      |+++|+||+|+...+.+..++...++... +++++++||++|.|++++|+++.+.+.+
T Consensus       133 piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          133 ELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             EEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             cEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            99999999999877778888888888774 7889999999999999999999998865

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.93  E-value=5.5e-24  Score=159.30  Aligned_cols=135  Identities=39%  Similarity=0.690  Sum_probs=124.7

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.||+|.++....+.+.+..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+.....+..
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~  112 (170)
T 1z0j_A           33 PNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSI  112 (170)
T ss_dssp             TTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTS
T ss_pred             CCCCCceeEEEEEEEEEECCeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCC
Confidence            45688999999888999999999999999999999999999999999999999999999999999999999988766789


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      |+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+
T Consensus       113 ~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          113 VVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             EEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             cEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            9999999999987777888889999999999999999999999999999998865

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.93  E-value=2.3e-26  Score=197.52  Aligned_cols=215  Identities=15%  Similarity=0.042  Sum_probs=135.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHHHhccCccccccccCCcccCCC
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEANGIKIGPQ   79 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (245)
                      .|++||+||+|+.+.+.    ++..+. ..+. .++++||++|.|++++|+.+++.+.+..   ..........+.+.+.
T Consensus       112 ~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~---~~~~~~~~~ki~lvG~  183 (436)
T 2hjg_A          112 KPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIP---ETKYNEEVIQFCLIGR  183 (436)
T ss_dssp             SCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCC---SSCCCTTCEEEEEECS
T ss_pred             CCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcCccc---cccccccCcEEEEEcC
Confidence            48999999999865321    112222 3454 6899999999999999999988774211   0001111112222222


Q ss_pred             CCCCCCC-----CCCCCC--CCCCCCcceeeEEEEEECCeEEEEEEEcCCCh----------hhhhhhhH-hhccCCcEE
Q psy13390         80 HSPNNPS-----LPSGSS--GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQ----------EAFRSITR-SYYRGAAGA  141 (245)
Q Consensus        80 ~~~~~~~-----l~~~~~--~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~-~~~~~~d~v  141 (245)
                      .+..+++     ++....  ...|+++.+.....+.+++.  .+.||||||+          ++|..++. .+++.+|++
T Consensus       184 ~nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~  261 (436)
T 2hjg_A          184 PNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVV  261 (436)
T ss_dssp             TTSSHHHHHHHHHTSTTEEEC---------CCEEEEETTE--EEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHHCSEE
T ss_pred             CCCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEECCe--EEEEEECCCcCcCccccchHHHHHHHHHHHHHHhCCEE
Confidence            2221111     222221  22333444444445566665  4899999998          66666655 489999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHH-HH----HHcCCcEEEeccCCCCCHH
Q psy13390        142 LLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEV-FA----REHGLVFMETSAKLATNVE  216 (245)
Q Consensus       142 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~  216 (245)
                      ++|+|++++.++++. .|+..+..   .++|+++|+||+|+.+.+....++... +.    ...+++++++||++|.|++
T Consensus       262 llv~D~~~~~s~~~~-~~~~~~~~---~~~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~~v~  337 (436)
T 2hjg_A          262 AVVLDGEEGIIEQDK-RIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIH  337 (436)
T ss_dssp             EEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGG
T ss_pred             EEEEcCCcCCcHHHH-HHHHHHHH---cCCcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCCCHH
Confidence            999999998888775 46665543   458999999999997655443333322 22    2236789999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy13390        217 EAFIDTAKEIYEK  229 (245)
Q Consensus       217 ~~~~~i~~~i~~~  229 (245)
                      ++|+.+.+.+...
T Consensus       338 ~l~~~i~~~~~~~  350 (436)
T 2hjg_A          338 TLMPAIIKASENH  350 (436)
T ss_dssp             GHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999887653

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.92  E-value=2e-24  Score=161.76  Aligned_cols=138  Identities=47%  Similarity=0.819  Sum_probs=119.1

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.||+|.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+......+.
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  109 (170)
T 1g16_A           30 PSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDEA  109 (170)
T ss_dssp             C-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred             CCCCCccceeEEEEEEEECCEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            45678899999888888888899999999999999999999999999999999999999999999999999888766689


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      |+++|+||+|+ ..+.+..++...++...+++++++||++|.|++++|+++.+.+.++.
T Consensus       110 piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  167 (170)
T 1g16_A          110 QLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI  167 (170)
T ss_dssp             EEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHTC
T ss_pred             cEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999999 44567778888899889999999999999999999999999987643

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=2.1e-24  Score=165.40  Aligned_cols=138  Identities=38%  Similarity=0.651  Sum_probs=126.1

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||+|.++....+.+++..+.+.||||+|++++...+..+++.+|++++|||++++.+++.+..|+..+......+
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~  128 (192)
T 2fg5_A           49 DHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPEN  128 (192)
T ss_dssp             CTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCTHHHHHHHHHHHHHHHHSCTT
T ss_pred             CCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCC
Confidence            34688999999988888888899999999999999999999999999999999999999999999999999998876568


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+
T Consensus       129 ~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  186 (192)
T 2fg5_A          129 IVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIPP  186 (192)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC-
T ss_pred             CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHHh
Confidence            9999999999997767788889999999999999999999999999999999987643

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.92  E-value=3.8e-24  Score=159.76  Aligned_cols=137  Identities=28%  Similarity=0.421  Sum_probs=102.7

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  170 (245)
                      ..+.++.|.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+.... ..+
T Consensus        28 ~~~~~~~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  106 (166)
T 3q72_A           28 GPEAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDD  106 (166)
T ss_dssp             --------CEE-EEEEEETTEEEEEEEEECC---------------CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---C
T ss_pred             cCCCCccccce-EEEEEECCEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            34567788777 4667889999999999999999999999999999999999999999999999999999887754 267


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      +|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.++
T Consensus       107 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          107 VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             CCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999988788889999999999999999999999999999999999998764

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.92  E-value=2.4e-24  Score=163.28  Aligned_cols=140  Identities=27%  Similarity=0.405  Sum_probs=124.5

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-S  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~  169 (245)
                      ...+.||++.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .
T Consensus        32 ~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  110 (181)
T 3t5g_A           32 VDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV  110 (181)
T ss_dssp             CSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHC---
T ss_pred             CCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence            456778999888 77788899999999999999999999999999999999999999999999999999998876643 5


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ  231 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  231 (245)
                      ++|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+++++.+.....
T Consensus       111 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  172 (181)
T 3t5g_A          111 QIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKMDG  172 (181)
T ss_dssp             -CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC--
T ss_pred             CCCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHhcC
Confidence            79999999999998778889999999999999999999999999999999999999876543

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.92  E-value=6.6e-24  Score=159.73  Aligned_cols=138  Identities=30%  Similarity=0.392  Sum_probs=115.9

Q ss_pred             CCCCCcceeeEEEEEECCeEEEEEEEcCCChhh--hhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390         94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEA--FRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN  170 (245)
Q Consensus        94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~--~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  170 (245)
                      ..+++|.++....+.+++..+.+.+|||+|++.  +..++..+++.+|++++|||++++.+++.+..|+..+.... ..+
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~  111 (175)
T 2nzj_A           32 LHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIADRGSFESASELRIQLRRTHQADH  111 (175)
T ss_dssp             -CCCSSSSEEEEEEEETTEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETTCHHHHHHHHHHHHHHHHCC----
T ss_pred             ccCccccceeEEEEEECCEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCC
Confidence            456788888888888999999999999999988  56777889999999999999999999999999998887653 257


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ  231 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  231 (245)
                      +|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.....
T Consensus       112 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  172 (175)
T 2nzj_A          112 VPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRRR  172 (175)
T ss_dssp             CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhhc
Confidence            9999999999998777788888888888899999999999999999999999999876543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.92  E-value=1.4e-24  Score=169.28  Aligned_cols=139  Identities=22%  Similarity=0.413  Sum_probs=121.3

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHH-HHHHHHHHHhhcCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH-LTTWLEDARQHSNS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~-~~~~~~~~~~~~~~  169 (245)
                      ...+.||+|.++ ...+.+++..+.+.||||+|++.|..++..+++++|++|+|||++++.+++. +..|+..+.... +
T Consensus        53 ~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~  130 (214)
T 3q3j_B           53 PETYVPTVFENY-TACLETEEQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISRPETVDSALKKWRTEILDYC-P  130 (214)
T ss_dssp             CSSCCCCSEEEE-EEEEEC--CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCTHHHHHHHTHHHHHHHHHC-T
T ss_pred             CCCcCCeeeeeE-EEEEEECCEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcCHHHHHHHHHHHHHHHHHhC-C
Confidence            456789999887 5667788889999999999999999999999999999999999999999998 688999988876 6


Q ss_pred             CCeEEEEEeCCCCccC------------cccCHHHHHHHHHHcCC-cEEEeccCCCCC-HHHHHHHHHHHHHHHHh
Q psy13390        170 NMVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATN-VEEAFIDTAKEIYEKIQ  231 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~i~~~i~~~~~  231 (245)
                      ++|+++|+||+|+...            +.+..+++..++..+++ ++++|||++|.| ++++|+++++.+.....
T Consensus       131 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~~~  206 (214)
T 3q3j_B          131 STRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNKPS  206 (214)
T ss_dssp             TSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC---
T ss_pred             CCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhccCc
Confidence            7999999999999753            56888999999999999 899999999998 99999999999876554

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.92  E-value=9e-25  Score=170.53  Aligned_cols=143  Identities=34%  Similarity=0.619  Sum_probs=126.2

Q ss_pred             CCCCCCCcceeeEEEEEECCe----------EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHH
Q psy13390         92 SGSSSGGGVEFGARMITIDGK----------QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE  161 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~----------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~  161 (245)
                      ..+.||+|.++....+.+++.          .+.+.||||+|++.+...+..+++.+|++|+|||++++.+++.+..|+.
T Consensus        52 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~~~s~~~~~~~l~  131 (217)
T 2f7s_A           52 PKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMS  131 (217)
T ss_dssp             CEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHHH
T ss_pred             cCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHH
Confidence            456788998888877777766          7899999999999999999999999999999999999999999999988


Q ss_pred             HHHhhcC-CCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCC
Q psy13390        162 DARQHSN-SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGV  234 (245)
Q Consensus       162 ~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~  234 (245)
                      .+..... .++|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+......
T Consensus       132 ~i~~~~~~~~~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~~~~  205 (217)
T 2f7s_A          132 QLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRMEQCV  205 (217)
T ss_dssp             TCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhcCcCCCCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhhcCC
Confidence            8766543 579999999999998777788889999999999999999999999999999999999988665443

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.92  E-value=4e-24  Score=164.41  Aligned_cols=135  Identities=27%  Similarity=0.366  Sum_probs=121.3

Q ss_pred             CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhh-hhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCC
Q psy13390         94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRS-ITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNM  171 (245)
Q Consensus        94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~  171 (245)
                      +.|+++.++....+.+++..+.+.+|||+|++.+.. ++..+++.+|++++|||++++.+|+.+..|+..+..... .++
T Consensus        52 ~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~  131 (195)
T 3cbq_A           52 HEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL  131 (195)
T ss_dssp             GTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCC
T ss_pred             CCCCcccceEEEEEEECCEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            457788888888888999999999999999988765 788899999999999999999999999999998877653 479


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      |+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+++++.+..
T Consensus       132 piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          132 PVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL  188 (195)
T ss_dssp             CEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred             CEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence            999999999998777788889999999999999999999999999999999998854

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.92  E-value=4.7e-24  Score=159.39  Aligned_cols=136  Identities=36%  Similarity=0.577  Sum_probs=124.7

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.||+|.++....+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+.... .+.
T Consensus        32 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~~  110 (168)
T 1z2a_A           32 KDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GDI  110 (168)
T ss_dssp             CCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CSC
T ss_pred             CCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhC-CCC
Confidence            4578899999998999999999999999999999999999999999999999999999999999999999887766 678


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      |+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+
T Consensus       111 piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  167 (168)
T 1z2a_A          111 PTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ  167 (168)
T ss_dssp             CEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHC
T ss_pred             CEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            999999999998767778888899999999999999999999999999999988753

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=1.6e-23  Score=162.81  Aligned_cols=143  Identities=44%  Similarity=0.790  Sum_probs=128.8

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.||+|.++....+.+++..+.+.||||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+......++
T Consensus        47 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  126 (213)
T 3cph_A           47 PSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTDERTFTNIKQWFKTVNEHANDEA  126 (213)
T ss_dssp             CSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCS
T ss_pred             cccCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            46788999999888999999999999999999999999999999999999999999999999999999999888765679


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVF  235 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~~  235 (245)
                      |+++|+||+|+ ..+.+..++...++..++++++++||++|.|++++|+++.+.+.+.......
T Consensus       127 piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~~~~  189 (213)
T 3cph_A          127 QLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKIDSNKL  189 (213)
T ss_dssp             EEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHHTTSC
T ss_pred             CEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhhhhc
Confidence            99999999999 4456777888888888999999999999999999999999999887765543

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.92  E-value=8.8e-24  Score=160.42  Aligned_cols=137  Identities=28%  Similarity=0.456  Sum_probs=124.4

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~  169 (245)
                      ...+.||++.++ .....+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+.... ..
T Consensus        44 ~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  122 (183)
T 3kkq_A           44 VDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE  122 (183)
T ss_dssp             CSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS
T ss_pred             CCCCCCCcccee-EEEEEeCCcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence            456778898888 7778889999999999999999999999999999999999999999999999999999886643 36


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccC-CCCCHHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK-LATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~~~~~~i~~~i~~  228 (245)
                      ++|+++|+||+|+...+.+..+++..++..++++++++||+ +|.|++++|+++.+.+.+
T Consensus       123 ~~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          123 SFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             CCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            79999999999998778889999999999999999999999 999999999999998764

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.92  E-value=1.2e-23  Score=160.75  Aligned_cols=143  Identities=36%  Similarity=0.607  Sum_probs=127.0

Q ss_pred             CCCCCCCCcceee-EEEEEECCe---------EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHH
Q psy13390         91 SSGSSSGGGVEFG-ARMITIDGK---------QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWL  160 (245)
Q Consensus        91 ~~~~~~tig~~~~-~~~~~~~~~---------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~  160 (245)
                      ...+.||+|.++. ...+.+.+.         .+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+
T Consensus        37 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~  116 (195)
T 3bc1_A           37 NSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWI  116 (195)
T ss_dssp             CCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHH
T ss_pred             CcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHH
Confidence            3457789999887 566666665         789999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcC-CCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy13390        161 EDARQHSN-SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEG  233 (245)
Q Consensus       161 ~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~  233 (245)
                      ..+..+.. .++|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.++...+
T Consensus       117 ~~i~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~~~  190 (195)
T 3bc1_A          117 SQLQMHAYSENPDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRMERS  190 (195)
T ss_dssp             HHHHHHSSSSSCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCCCCCCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhhhc
Confidence            99887664 67999999999999876778888899999889999999999999999999999999998876553

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.92  E-value=4.8e-24  Score=160.96  Aligned_cols=138  Identities=39%  Similarity=0.699  Sum_probs=124.9

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||+|.++....+.+++..+.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+......+
T Consensus        40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  119 (179)
T 2y8e_A           40 DNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITNTNSFHQTSKWIDDVRTERGSD  119 (179)
T ss_dssp             CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS
T ss_pred             CCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence            34568899999988899999999999999999999999999999999999999999999999999999999888776568


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+
T Consensus       120 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          120 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             SEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred             CcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            9999999999998777788888888998899999999999999999999999886643

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.92  E-value=2.6e-24  Score=165.77  Aligned_cols=137  Identities=39%  Similarity=0.673  Sum_probs=114.1

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||+|.++....+.+++..+.+.||||+|++.+..++..+++.+|++|+|||++++.+++.+..|+..+......+
T Consensus        54 ~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~  133 (199)
T 2p5s_A           54 RENISATLGVDFQMKTLIVDGERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTCEKSFLNIREWVDMIEDAAHET  133 (199)
T ss_dssp             C----------CEEEEEEETTEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHC---
T ss_pred             CccCCCCccceeEEEEEEECCEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCChHHHHHHHHHHHHHHHhcCCC
Confidence            34678999999988899999999999999999999999999999999999999999999999999999999888776567


Q ss_pred             CeEEEEEeCCCCc------cCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLD------ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       171 ~piivv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      +|+++|+||+|+.      ..+.+..+++..++...+++++++||++|.|++++|+++++.+.
T Consensus       134 ~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            9999999999996      34567788888999999999999999999999999999998874

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.92  E-value=9e-24  Score=159.73  Aligned_cols=140  Identities=31%  Similarity=0.544  Sum_probs=124.4

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~  169 (245)
                      ...+.+|++.++. ..+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+.... ..
T Consensus        35 ~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  113 (181)
T 2fn4_A           35 VSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD  113 (181)
T ss_dssp             CSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS
T ss_pred             ccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            3457788888875 677888989999999999999999999999999999999999999999999999998885543 36


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ  231 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  231 (245)
                      ++|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+...
T Consensus       114 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~~  175 (181)
T 2fn4_A          114 DFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQE  175 (181)
T ss_dssp             CCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHTT
T ss_pred             CCCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhhc
Confidence            79999999999998777788888999999999999999999999999999999999977554

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=8.8e-24  Score=164.27  Aligned_cols=136  Identities=26%  Similarity=0.349  Sum_probs=117.7

Q ss_pred             CCCCcceeeEEEEEECCeEEEEEEEcCCChhh-hhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCe
Q psy13390         95 SSGGGVEFGARMITIDGKQIKLQIWDTAGQEA-FRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSNMV  172 (245)
Q Consensus        95 ~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p  172 (245)
                      .+++|.++....+.+++..+.+.+|||+|++. +..+++.+++.+|++++|||++++.+|+.+..|+..+.... ..++|
T Consensus        68 ~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~p  147 (211)
T 2g3y_A           68 CEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP  147 (211)
T ss_dssp             ---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSC
T ss_pred             CCccceeeEEEEEEECCeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            46688888888888999999999999999887 56677788999999999999999999999999988876543 25799


Q ss_pred             EEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       173 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      +++|+||+|+...+.+..+++..++..+++++++|||++|.||+++|+++++.+....
T Consensus       148 iilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~~  205 (211)
T 2g3y_A          148 IILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR  205 (211)
T ss_dssp             EEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             EEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            9999999999876778888888888889999999999999999999999999986543

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.92  E-value=2.9e-24  Score=166.17  Aligned_cols=141  Identities=25%  Similarity=0.473  Sum_probs=107.7

Q ss_pred             CCCCCCCcceeeEEEEEECCe--EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-
Q psy13390         92 SGSSSGGGVEFGARMITIDGK--QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-  168 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~--~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-  168 (245)
                      ..+.||+|.++....+.+++.  .+.+.||||+|++.+..++..+++++|++++|||++++.+++.+..|+..+..... 
T Consensus        49 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~  128 (208)
T 2yc2_C           49 KDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVFDVSSMESFESCKAWFELLKSARPD  128 (208)
T ss_dssp             ------------CEEEECTTSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEEETTCHHHHHHHHHHHHHHHHHCSC
T ss_pred             CCCCCccceEEEEEEEEECCcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEEECCCHHHHHHHHHHHHHHHHhhcc
Confidence            467899998888888888887  89999999999999999999999999999999999999999999999999988765 


Q ss_pred             --CCCeEEEEEeCCCCcc-CcccCHHHHHHHHHHcCCcEEEeccCC-CCCHHHHHHHHHHHHHHHHhc
Q psy13390        169 --SNMVIMLIGNKSDLDA-RREVKKEEGEVFAREHGLVFMETSAKL-ATNVEEAFIDTAKEIYEKIQE  232 (245)
Q Consensus       169 --~~~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~~~~~~i~~~i~~~~~~  232 (245)
                        .++|+++|+||+|+.. .+.+..+++..++..++++++++||++ |.|++++|+++.+.+.+...+
T Consensus       129 ~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~~~  196 (208)
T 2yc2_C          129 RERPLRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNYED  196 (208)
T ss_dssp             TTSCCEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHHHH
T ss_pred             cccCCcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHHHh
Confidence              5899999999999987 677888999999999999999999999 999999999999998776543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.92  E-value=8.1e-26  Score=195.12  Aligned_cols=216  Identities=16%  Similarity=0.063  Sum_probs=134.0

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHHHhccCccccccccCCcccCCC
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEANGIKIGPQ   79 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (245)
                      .|++||+||+|+...+    +....+. ..+. ..+++||++|.|+.++|+.+.+.+....   ..........+.+.+.
T Consensus       132 ~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~---~~~~~~~~~ki~ivG~  203 (456)
T 4dcu_A          132 KPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIP---ETKYNEEVIQFCLIGR  203 (456)
T ss_dssp             SCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSC---SSCCCTTCEEEEEECS
T ss_pred             CCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhccccc---ccccccccceeEEecC
Confidence            4899999999986432    1111111 2333 4679999999999999999987653211   0011111112222222


Q ss_pred             CCCCCCC-----CCCCCC--CCCCCCcceeeEEEEEECCeEEEEEEEcCCC----------hhhhhhhhHh-hccCCcEE
Q psy13390         80 HSPNNPS-----LPSGSS--GSSSGGGVEFGARMITIDGKQIKLQIWDTAG----------QEAFRSITRS-YYRGAAGA  141 (245)
Q Consensus        80 ~~~~~~~-----l~~~~~--~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~~~~-~~~~~d~v  141 (245)
                      .+..+++     .+....  ...|+++.+.....+.+++.  .+.||||||          +++|..++.. +++.+|++
T Consensus       204 ~~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ad~~  281 (456)
T 4dcu_A          204 PNVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYNQQ--EFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDRSEVV  281 (456)
T ss_dssp             TTSSHHHHHHHHHTSTTEEECC------CTTSEEEEETTE--EEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHHCSEE
T ss_pred             CCCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEECCc--eEEEEECCCCCcCcccchHHHHHHHHHHHHHHhhCCEE
Confidence            2211111     112222  23334444444455666665  699999999          6888777664 88999999


Q ss_pred             EEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHc-----CCcEEEeccCCCCCHH
Q psy13390        142 LLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREH-----GLVFMETSAKLATNVE  216 (245)
Q Consensus       142 i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~  216 (245)
                      ++|+|++++.+.++ ..|+..+..   .++|+++|+||+|+...+....++....+...     +++++++||++|.|++
T Consensus       282 llviD~~~~~~~~~-~~~~~~~~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~  357 (456)
T 4dcu_A          282 AVVLDGEEGIIEQD-KRIAGYAHE---AGKAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKKRIH  357 (456)
T ss_dssp             EEEEETTTCCCHHH-HHHHHHHHH---TTCEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCTTGG
T ss_pred             EEEEeCCCCcCHHH-HHHHHHHHH---cCCCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCcCHH
Confidence            99999998655333 344444443   45899999999999876666666666665544     5789999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy13390        217 EAFIDTAKEIYEKI  230 (245)
Q Consensus       217 ~~~~~i~~~i~~~~  230 (245)
                      ++|+++.+.+....
T Consensus       358 ~l~~~i~~~~~~~~  371 (456)
T 4dcu_A          358 TLMPAIIKASENHS  371 (456)
T ss_dssp             GHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhc
Confidence            99999998875543

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.92  E-value=1.1e-23  Score=160.96  Aligned_cols=136  Identities=38%  Similarity=0.707  Sum_probs=121.5

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhh-hhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFR-SITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NS  169 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~  169 (245)
                      ..+.||+|.++....+.+++..+.+.||||+|++++. .++..+++.+|++++|||++++.+++.+..|+..+.... ..
T Consensus        47 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~  126 (189)
T 1z06_A           47 DRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLAN  126 (189)
T ss_dssp             SSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCS
T ss_pred             CCCCCCcceEEEEEEEEECCEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence            4568899999988899999999999999999999998 889999999999999999999999999999999988765 36


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCC---CCHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA---TNVEEAFIDTAKEIY  227 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~i~~~~~~i~~~i~  227 (245)
                      ++|+++|+||+|+...+.+..++...++...+++++++||++|   .|++++|+++++.+.
T Consensus       127 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          127 DIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred             CCCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence            7999999999999877778888899999999999999999999   999999999988764

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.92  E-value=4.8e-24  Score=162.78  Aligned_cols=135  Identities=27%  Similarity=0.412  Sum_probs=117.5

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN--  168 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--  168 (245)
                      ...+.||+|.++ ...+.+++..+.+.||||+|++.++.+ ..+++.+|++++|||++++.+++.+..|+..+.....  
T Consensus        47 ~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~  124 (187)
T 3c5c_A           47 ISEYDPNLEDTY-SSEETVDHQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDSRQSFDSSSSYLELLALHAKET  124 (187)
T ss_dssp             CSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcccCCCcccee-eEEEEECCEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhhcc
Confidence            456788999887 556778999999999999999988875 6799999999999999999999999999998877631  


Q ss_pred             -CCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEecc-CCCCCHHHHHHHHHHHHH
Q psy13390        169 -SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSA-KLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       169 -~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~i~~~~~~i~~~i~  227 (245)
                       .++|+++|+||+|+...+.+..+++..++..++++++++|| ++|.|++++|+++++.+.
T Consensus       125 ~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          125 QRSIPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             CCCCCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred             CCCCCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCccccHHHHHHHHHHHHh
Confidence             57999999999999877788889999999999999999999 899999999999998875

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.92  E-value=4.9e-24  Score=160.93  Aligned_cols=136  Identities=35%  Similarity=0.512  Sum_probs=120.3

Q ss_pred             CCCCCCcceeeEEEEEECC-eEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--C
Q psy13390         93 GSSSGGGVEFGARMITIDG-KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN--S  169 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~-~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~  169 (245)
                      .+.||+|.++....+.+.+ ..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+.....  .
T Consensus        34 ~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  113 (178)
T 2hxs_A           34 QYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITNYQSFENLEDWYTVVKKVSEESE  113 (178)
T ss_dssp             HHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHT
T ss_pred             CCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccC
Confidence            4578999998888888876 678999999999999999999999999999999999999999999999988876432  2


Q ss_pred             CCe-EEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        170 NMV-IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       170 ~~p-iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +.| +++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.+
T Consensus       114 ~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          114 TQPLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG  173 (178)
T ss_dssp             CCCEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred             CCCeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            345 89999999998767788888999999999999999999999999999999988754

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.92  E-value=1.2e-23  Score=162.13  Aligned_cols=140  Identities=24%  Similarity=0.439  Sum_probs=119.0

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHSNS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~  169 (245)
                      ...+.||++..+ ...+.+++..+.+.+|||+|+++|..++..+++++|++++|||++++.+++.+. .|+..+..+. .
T Consensus        46 ~~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~  123 (201)
T 2q3h_A           46 PTEYIPTAFDNF-SAVVSVDGRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVSPSSFQNVSEKWVPEIRCHC-P  123 (201)
T ss_dssp             -----CCSSEEE-EEEEEETTEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-S
T ss_pred             CCCCCCccccee-EEEEEECCEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C
Confidence            356778888666 556778899999999999999999999999999999999999999999999987 6998888765 5


Q ss_pred             CCeEEEEEeCCCCcc------------CcccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390        170 NMVIMLIGNKSDLDA------------RREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKIQE  232 (245)
Q Consensus       170 ~~piivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  232 (245)
                      ++|+++|+||+|+..            .+.+..+++..++..+++ +++++||++|.|++++|+++++.+.+....
T Consensus       124 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~  199 (201)
T 2q3h_A          124 KAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYSDT  199 (201)
T ss_dssp             SSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHHC-
T ss_pred             CCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccccc
Confidence            799999999999965            255778888889988887 899999999999999999999999876654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.92  E-value=7.1e-24  Score=158.72  Aligned_cols=136  Identities=26%  Similarity=0.370  Sum_probs=112.2

Q ss_pred             CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhh-hhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCC
Q psy13390         94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRS-ITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNM  171 (245)
Q Consensus        94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~  171 (245)
                      +.++.+.++....+.+++..+.+.+|||+|++.+.. ++..+++.+|++++|||++++.+++.+..|+..+..... .++
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  110 (169)
T 3q85_A           31 HEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDL  110 (169)
T ss_dssp             -------CEEEEEEEETTEEEEEEEECCCCC--------CHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCC
T ss_pred             ccCCCcCCeeeEEEEECCeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCC
Confidence            345556777788888999999999999999998876 777889999999999999999999999999999887664 479


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      |+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|+++.+.+..+
T Consensus       111 p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          111 PVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             CEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             CEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHhc
Confidence            9999999999987788899999999999999999999999999999999999988653

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.92  E-value=3.1e-23  Score=156.37  Aligned_cols=136  Identities=34%  Similarity=0.625  Sum_probs=119.1

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN---  168 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~---  168 (245)
                      ..+.||+|.++....+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+.....   
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  113 (177)
T 1wms_A           34 TQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKE  113 (177)
T ss_dssp             C----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSC
T ss_pred             CCCCCceeeeEEEEEEEECCEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHHccccc
Confidence            45789999999888999999999999999999999999999999999999999999999999999999988876543   


Q ss_pred             -CCCeEEEEEeCCCCccCcccCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        169 -SNMVIMLIGNKSDLDARREVKKEEGEVFAR-EHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       169 -~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                       .++|+++|+||+|+. .+.+..++...++. ..+++++++||++|.|++++|+++++.+.+
T Consensus       114 ~~~~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          114 PESFPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             TTTSCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             cCCCcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence             578999999999997 45677888888887 567899999999999999999999998864

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=2.7e-23  Score=159.11  Aligned_cols=139  Identities=45%  Similarity=0.793  Sum_probs=125.3

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-S  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~  169 (245)
                      ...+.||+|.++....+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .
T Consensus        41 ~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~  120 (195)
T 1x3s_A           41 DPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTRN  120 (195)
T ss_dssp             CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCS
T ss_pred             CccCCCccceEEEEEEEEECCeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcC
Confidence            356789999999989999999999999999999999999999999999999999999999999999999998877653 5


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      ++|+++|+||+|+. .+.+..++...++...+++++++||++|.|++++|+++.+.+.+..
T Consensus       121 ~~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (195)
T 1x3s_A          121 DIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQTP  180 (195)
T ss_dssp             CCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTSG
T ss_pred             CCcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence            79999999999994 3567788888999999999999999999999999999999987543

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.91  E-value=3.2e-23  Score=160.14  Aligned_cols=140  Identities=31%  Similarity=0.538  Sum_probs=124.9

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-S  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~  169 (245)
                      ...+.||++..+ ...+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .
T Consensus        40 ~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  118 (206)
T 2bov_A           40 VEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE  118 (206)
T ss_dssp             CTTCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCS
T ss_pred             CCCCCCccceEE-EEEEEECCEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC
Confidence            356778888776 45677888889999999999999999999999999999999999999999999999999887653 5


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ  231 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  231 (245)
                      ++|+++|+||+|+...+.+..+++..++..++++++++||++|.|++++|+++++.+.+...
T Consensus       119 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  180 (206)
T 2bov_A          119 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKM  180 (206)
T ss_dssp             CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHccc
Confidence            79999999999998777788889999999899999999999999999999999999987543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.91  E-value=1.5e-24  Score=166.42  Aligned_cols=137  Identities=17%  Similarity=0.239  Sum_probs=118.2

Q ss_pred             CCCCCCcceeeEEEE-EECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCC------ChhhHHHHHHHHHHHHh
Q psy13390         93 GSSSGGGVEFGARMI-TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDIT------RRETFNHLTTWLEDARQ  165 (245)
Q Consensus        93 ~~~~tig~~~~~~~~-~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~------~~~s~~~~~~~~~~~~~  165 (245)
                      .+.||+|.++....+ .+++..+.+.+|||+|++++..+++.+++++|++++|||++      +..+++.+..|+..+..
T Consensus        52 ~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~  131 (198)
T 3t1o_A           52 EDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGL  131 (198)
T ss_dssp             SSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccccceeeeecccccccccCCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhcc
Confidence            466888888877766 67888999999999999999999999999999999999999      55677777788877743


Q ss_pred             hcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390        166 HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKIQE  232 (245)
Q Consensus       166 ~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  232 (245)
                      . ..++|+++|+||+|+..  .+..+++..++...++ +++++||++|.|++++|+++.+.+.++..+
T Consensus       132 ~-~~~~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~~  196 (198)
T 3t1o_A          132 T-LDDVPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVAG  196 (198)
T ss_dssp             C-TTSSCEEEEEECTTSTT--CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC-
T ss_pred             c-cCCCCEEEEEEchhccc--ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhhc
Confidence            2 26899999999999964  3678888999988998 999999999999999999999999887654

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.91  E-value=4.1e-23  Score=156.90  Aligned_cols=141  Identities=32%  Similarity=0.542  Sum_probs=125.0

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-S  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~  169 (245)
                      ...+.+|++.++ ...+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .
T Consensus        44 ~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  122 (187)
T 2a9k_A           44 VEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE  122 (187)
T ss_dssp             CCSCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             CCcCCCccceEE-EEEEEECCEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence            345678887776 45567888889999999999999999999999999999999999999999999999998877654 4


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE  232 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  232 (245)
                      ++|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.+.+.+
T Consensus       123 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~~  185 (187)
T 2a9k_A          123 NVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARKME  185 (187)
T ss_dssp             TCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHC
T ss_pred             CCCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhhcc
Confidence            799999999999987777888889999999999999999999999999999999999876644

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.91  E-value=2e-23  Score=157.68  Aligned_cols=133  Identities=14%  Similarity=0.302  Sum_probs=113.1

Q ss_pred             CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc---CCC
Q psy13390         94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS---NSN  170 (245)
Q Consensus        94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~---~~~  170 (245)
                      +.||+|..+ ...+.+++..+.+.+|||+|+++     ..+++++|++++|||++++.+++.+..|+..+....   ..+
T Consensus        35 ~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~  108 (178)
T 2iwr_A           35 LEKTESEQY-KKEMLVDGQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGG  108 (178)
T ss_dssp             CSSCSSSEE-EEEEEETTEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCC
T ss_pred             cCCCcceeE-EEEEEECCEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            678888666 67778899999999999999986     458889999999999999999999999766655443   257


Q ss_pred             CeEEEEEeCCCCc--cCcccCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390        171 MVIMLIGNKSDLD--ARREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEIYEKIQE  232 (245)
Q Consensus       171 ~piivv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  232 (245)
                      +|+++|+||+|+.  ..+.+..+++..++... +++++++||++|.|++++|+++++.+.+....
T Consensus       109 ~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~  173 (178)
T 2iwr_A          109 LALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLRKQ  173 (178)
T ss_dssp             CEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHHhh
Confidence            9999999999994  45667888888888776 68999999999999999999999999876654

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.91  E-value=3.9e-23  Score=158.47  Aligned_cols=137  Identities=23%  Similarity=0.467  Sum_probs=121.5

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQHSNS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~  169 (245)
                      ...+.||+|.++. ..+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+ ..|+..+.... .
T Consensus        49 ~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~  126 (194)
T 3reg_A           49 PTAYVPTVFENFS-HVMKYKNEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNNRTSFDNISTKWEPEIKHYI-D  126 (194)
T ss_dssp             CSSCCCCSEEEEE-EEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-T
T ss_pred             CCccCCeeeeeeE-EEEEECCEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C
Confidence            4567889988875 4677899999999999999999999999999999999999999999999997 67888887665 6


Q ss_pred             CCeEEEEEeCCCCccC--cccCHHHHHHHHHHcCCc-EEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDAR--REVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      ++|+++|+||+|+...  +.+..+++..++..++++ ++++||++|.|++++|+++.+.+.+.
T Consensus       127 ~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  189 (194)
T 3reg_A          127 TAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN  189 (194)
T ss_dssp             TSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred             CCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence            7999999999999643  667889999999999998 99999999999999999999988653

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.91  E-value=3.4e-23  Score=157.68  Aligned_cols=133  Identities=20%  Similarity=0.362  Sum_probs=115.3

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~  170 (245)
                      ..+.|| +.++ ...+.+++..+.+.+|||+|++.+.     +++++|++++|||++++.+|+.+..|+..+..... .+
T Consensus        47 ~~~~~t-~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  119 (184)
T 3ihw_A           47 QEESPE-GGRF-KKEIVVDGQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASE  119 (184)
T ss_dssp             CCCCTT-CEEE-EEEEEETTEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGG
T ss_pred             CCcCCC-cceE-EEEEEECCEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence            446677 4455 4778889999999999999998876     88899999999999999999999999999987753 57


Q ss_pred             CeEEEEEeCCCCc--cCcccCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390        171 MVIMLIGNKSDLD--ARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIYEKIQ  231 (245)
Q Consensus       171 ~piivv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  231 (245)
                      +|+++|+||+|+.  ..+.+..+++..++...+ ++++++||++|.|++++|+++++.+.+.+.
T Consensus       120 ~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~~  183 (184)
T 3ihw_A          120 VPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVALRK  183 (184)
T ss_dssp             SCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHHC-
T ss_pred             CCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHHhc
Confidence            9999999999994  456788899999999887 899999999999999999999999987653

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=3e-23  Score=159.06  Aligned_cols=135  Identities=24%  Similarity=0.413  Sum_probs=118.8

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHSNS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~  169 (245)
                      ...+.||+|.++ ...+.+++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+. .|+..+..+. +
T Consensus        44 ~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~  121 (194)
T 2atx_A           44 PEEYVPTVFDHY-AVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEYA-P  121 (194)
T ss_dssp             CCSCCCSSCCCE-EEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-T
T ss_pred             CCCCCCccccee-EEEEEECCEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C
Confidence            346778888776 456677888899999999999999999999999999999999999999999987 7988888765 4


Q ss_pred             CCeEEEEEeCCCCccC------------cccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ++|+++|+||+|+...            +.+..+++..++..+++ +++++||++|.|++++|+++.+.++
T Consensus       122 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~  192 (194)
T 2atx_A          122 NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  192 (194)
T ss_dssp             TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            7999999999999653            46778889999988887 8999999999999999999998875

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.91  E-value=5.2e-24  Score=164.37  Aligned_cols=141  Identities=27%  Similarity=0.470  Sum_probs=119.6

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-S  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~  169 (245)
                      ...+.||++.++ ...+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .
T Consensus        50 ~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  128 (201)
T 3oes_A           50 SEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKT  128 (201)
T ss_dssp             CSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCHHHHHHHHHHHHHHHC-----
T ss_pred             CCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCC
Confidence            356778888887 66677778889999999999999999999999999999999999999999999999999877643 5


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE  232 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  232 (245)
                      ++|+++|+||+|+...+.+...++..++...+++++++||++|.|++++|+++.+.+.+....
T Consensus       129 ~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~~~  191 (201)
T 3oes_A          129 RVPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVENS  191 (201)
T ss_dssp             CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC---
T ss_pred             CCCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhhhh
Confidence            789999999999987788888999999999999999999999999999999999999775544

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.91  E-value=3e-23  Score=154.75  Aligned_cols=136  Identities=32%  Similarity=0.555  Sum_probs=118.1

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~  170 (245)
                      ..+.||++.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .+
T Consensus        31 ~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  109 (168)
T 1u8z_A           31 EDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDEN  109 (168)
T ss_dssp             SCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred             CCCCCCcceEE-EEEEEECCEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            45667887766 45567888899999999999999999999999999999999999999999999999998887654 47


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +|+++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.+
T Consensus       110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          110 VPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             SCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence            9999999999998777788889999999899999999999999999999999998753

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.91  E-value=3.1e-23  Score=154.72  Aligned_cols=134  Identities=34%  Similarity=0.530  Sum_probs=118.7

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  170 (245)
                      ..+.||++.++ ...+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+.... ..+
T Consensus        30 ~~~~~t~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  108 (167)
T 1c1y_A           30 EKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTED  108 (167)
T ss_dssp             CSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSC
T ss_pred             CCCCCCccceE-EEEEEECCEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCC
Confidence            45678888776 4566778889999999999999999999999999999999999999999999999998887754 257


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      +|+++|+||+|+.+.+.+..++...++... +++++++||++|.|++++|+++.+.+
T Consensus       109 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          109 VPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence            999999999999877778888888888887 78999999999999999999999876

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.91  E-value=2.3e-23  Score=157.58  Aligned_cols=139  Identities=32%  Similarity=0.577  Sum_probs=109.1

Q ss_pred             CCCCCCCcceeeEEEEEEC-CeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--
Q psy13390         92 SGSSSGGGVEFGARMITID-GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN--  168 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--  168 (245)
                      ..+.||+|.++....+.++ +..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+.....  
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  114 (182)
T 1ky3_A           35 QQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVN  114 (182)
T ss_dssp             TTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCS
T ss_pred             cccCCccceEEEEEEEEEcCCcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCChHHHHHHHHHHHHHHHHhccc
Confidence            4577899999888888777 6678999999999999999999999999999999999999999999999988877643  


Q ss_pred             --CCCeEEEEEeCCCCc-cCcccCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        169 --SNMVIMLIGNKSDLD-ARREVKKEEGEVFAR-EHGLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       169 --~~~piivv~nK~Dl~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                        .++|+++|+||+|+. ..+.+..++...++. ..+++++++||++|.|++++|+++.+.+.+..
T Consensus       115 ~~~~~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~  180 (182)
T 1ky3_A          115 SPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  180 (182)
T ss_dssp             CTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             CcCCCcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence              578999999999995 334567788888887 56788999999999999999999999997754

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.91  E-value=4.9e-23  Score=153.45  Aligned_cols=136  Identities=31%  Similarity=0.492  Sum_probs=120.5

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~  170 (245)
                      ..+.||++..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .+
T Consensus        30 ~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  108 (167)
T 1kao_A           30 EKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEK  108 (167)
T ss_dssp             SCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSC
T ss_pred             ccCCCCcceeE-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            35567777555 67778899999999999999999999999999999999999999999999999999888877643 57


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      .|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+
T Consensus       109 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          109 VPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            9999999999998777788888899998899999999999999999999999988743

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.91  E-value=1.1e-22  Score=156.75  Aligned_cols=136  Identities=37%  Similarity=0.657  Sum_probs=117.5

Q ss_pred             CCCCCCCcceeeEEEEEECCeE-------------------------------------EEEEEEcCCChhhhhhhhHhh
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQ-------------------------------------IKLQIWDTAGQEAFRSITRSY  134 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~-------------------------------------~~~~l~Dt~G~~~~~~~~~~~  134 (245)
                      ..+.||+|.++....+.+++..                                     +.+.||||+|++.+...+..+
T Consensus        34 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~  113 (208)
T 3clv_A           34 ENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHNNYNENLCNIKFDIWDTAGQERYASIVPLY  113 (208)
T ss_dssp             SSCCCCCSCEEEEEEEETTC-------------------------------CCCTTTCEEEEEEEECTTGGGCTTTHHHH
T ss_pred             CCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccccccCccceeEEEEEECCCcHHHHHHHHHH
Confidence            3566777777777666666544                                     889999999999999999999


Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCC
Q psy13390        135 YRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATN  214 (245)
Q Consensus       135 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  214 (245)
                      ++.+|++++|||++++.+++.+..|+..+.....  .|+++|+||+| ...+.+..++...++...+++++++||++|.|
T Consensus       114 ~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~--~piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  190 (208)
T 3clv_A          114 YRGATCAIVVFDISNSNTLDRAKTWVNQLKISSN--YIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTN  190 (208)
T ss_dssp             HTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSC--CEEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTT
T ss_pred             hcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCC--CcEEEEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCC
Confidence            9999999999999999999999999998887653  89999999999 45567788899999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHH
Q psy13390        215 VEEAFIDTAKEIYEKI  230 (245)
Q Consensus       215 i~~~~~~i~~~i~~~~  230 (245)
                      ++++|+++.+.+.+..
T Consensus       191 i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          191 IKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999987654

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.91  E-value=2.2e-23  Score=158.61  Aligned_cols=135  Identities=24%  Similarity=0.446  Sum_probs=117.8

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQHSNSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~  170 (245)
                      ..+.||++.++ ...+.+++..+.+.+|||+|++.|..++..+++++|++++|||++++.+++.+ ..|+..+.... ++
T Consensus        34 ~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~-~~  111 (184)
T 1m7b_A           34 ENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PN  111 (184)
T ss_dssp             SSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TT
T ss_pred             CCCCCccceeE-EEEEEECCEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CC
Confidence            45778888777 45667788899999999999999999999999999999999999999999998 67988887765 57


Q ss_pred             CeEEEEEeCCCCccC------------cccCHHHHHHHHHHcC-CcEEEeccC-CCCCHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHG-LVFMETSAK-LATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~~~~~i~~~i~~  228 (245)
                      .|+++|+||+|+...            +.++.+++..++..++ ++++++||+ +|.|++++|+++++.+++
T Consensus       112 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~~gi~~l~~~i~~~~l~  183 (184)
T 1m7b_A          112 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  183 (184)
T ss_dssp             CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCCcCHHHHHHHHHHHHhc
Confidence            999999999999642            5578888999998887 689999999 689999999999998764

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=7.1e-23  Score=157.30  Aligned_cols=138  Identities=32%  Similarity=0.438  Sum_probs=122.1

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-S  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~  169 (245)
                      ...+.||++.++ ...+.+++..+.+.+|||+|++. ...+..+++.+|++++|||++++.+++.+..|+..+..... .
T Consensus        54 ~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~  131 (196)
T 2atv_A           54 IWEYDPTLESTY-RHQATIDDEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPK  131 (196)
T ss_dssp             CSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS
T ss_pred             CcccCCCCCceE-EEEEEECCEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCC
Confidence            345778888776 55677889999999999999988 77888999999999999999999999999999988877543 5


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCC-CHHHHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~i~~~i~~~~  230 (245)
                      ++|+++|+||+|+...+.+..+++..++...+++++++||++|. |++++|+++++.+.++.
T Consensus       132 ~~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~~  193 (196)
T 2atv_A          132 NVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR  193 (196)
T ss_dssp             CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhhc
Confidence            79999999999998777788889999999899999999999999 99999999999987654

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.91  E-value=1.2e-23  Score=163.57  Aligned_cols=139  Identities=25%  Similarity=0.510  Sum_probs=117.1

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHSNSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~  170 (245)
                      ..+.||+|..+ ...+.+++..+.+.+|||+|++.|..++..+++++|++++|||++++.+++.+. .|+..+..+. ++
T Consensus        36 ~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~-~~  113 (212)
T 2j0v_A           36 TDYIPTVFDNF-SANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFA-PN  113 (212)
T ss_dssp             SSCCCSSCCCE-EEEEECSSCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TT
T ss_pred             ccCCCccceeE-EEEEEECCEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CC
Confidence            45778888776 456678888899999999999999999999999999999999999999999987 7998888775 47


Q ss_pred             CeEEEEEeCCCCccCcc--------cCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390        171 MVIMLIGNKSDLDARRE--------VKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKIQE  232 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  232 (245)
                      +|+++|+||+|+...+.        +..+++..++..+++ +++++||++|.|++++|+++++.+.+....
T Consensus       114 ~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~  184 (212)
T 2j0v_A          114 VPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQPPRR  184 (212)
T ss_dssp             CCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC---
T ss_pred             CCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhhhhh
Confidence            99999999999865443        367888888888886 899999999999999999999998765443

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.91  E-value=5.6e-23  Score=158.97  Aligned_cols=139  Identities=33%  Similarity=0.613  Sum_probs=123.0

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN---  168 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~---  168 (245)
                      ..+.||+|.++....+.+++..+.+.||||+|++.+..++..+++++|++|+|||++++.+++.+..|+..+.....   
T Consensus        35 ~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  114 (207)
T 1vg8_A           35 NQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRD  114 (207)
T ss_dssp             SSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSS
T ss_pred             CCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCCHHHHHHHHHHHHHHHHhccccc
Confidence            45778999999888888899899999999999999999999999999999999999999999999999988876542   


Q ss_pred             -CCCeEEEEEeCCCCccCcccCHHHHHHHHH-HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390        169 -SNMVIMLIGNKSDLDARREVKKEEGEVFAR-EHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ  231 (245)
Q Consensus       169 -~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  231 (245)
                       .++|+++|+||+|+. .+.+..++...++. ..+++++++||++|.|++++|+++.+.+.+...
T Consensus       115 ~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~  178 (207)
T 1vg8_A          115 PENFPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET  178 (207)
T ss_dssp             GGGSCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhcc
Confidence             468999999999997 45567777888877 667899999999999999999999999987654

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.90  E-value=1.4e-22  Score=156.32  Aligned_cols=136  Identities=27%  Similarity=0.457  Sum_probs=118.4

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQHSNS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~  169 (245)
                      ...+.||++.++. ..+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+ ..|+..+.... +
T Consensus        51 ~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~  128 (201)
T 2gco_A           51 PEVYVPTVFENYI-ADIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFC-P  128 (201)
T ss_dssp             CSSCCCSSCCCCE-EEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-T
T ss_pred             CcccCCcccceEE-EEEEECCEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-C
Confidence            3457888888875 4467889999999999999999999999999999999999999999999998 57888877765 5


Q ss_pred             CCeEEEEEeCCCCccC------------cccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      ++|+++|+||+|+...            +.+..+++..++...++ +++++||++|.|++++|+++.+.+++
T Consensus       129 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~i~~~~l~  200 (201)
T 2gco_A          129 NVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGYLECSAKTKEGVREVFEMATRAGLQ  200 (201)
T ss_dssp             TCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEEEEeeCCCCCCHHHHHHHHHHHHhc
Confidence            7999999999999654            45777888889988888 79999999999999999999988753

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.90  E-value=3.8e-23  Score=160.15  Aligned_cols=135  Identities=24%  Similarity=0.446  Sum_probs=118.3

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQHSNSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~  170 (245)
                      ..+.||++.++ ...+.+++..+.+.||||+|++.|..++..+++++|++++|||++++.+++.+ ..|+..+.... .+
T Consensus        55 ~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~-~~  132 (205)
T 1gwn_A           55 ENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFC-PN  132 (205)
T ss_dssp             SSCCCCSEEEE-EEEEESSSSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TT
T ss_pred             CCcCCccceeE-EEEEEECCEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHC-CC
Confidence            45788998887 45667788899999999999999999999999999999999999999999998 67988887765 57


Q ss_pred             CeEEEEEeCCCCccC------------cccCHHHHHHHHHHcC-CcEEEeccC-CCCCHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHG-LVFMETSAK-LATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~-~~~~i~~~~~~i~~~i~~  228 (245)
                      +|+++|+||+|+...            +.+..+++..++..++ +++++|||+ +|.|++++|+++++.+++
T Consensus       133 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~gv~~lf~~l~~~~l~  204 (205)
T 1gwn_A          133 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  204 (205)
T ss_dssp             CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCCcCHHHHHHHHHHHHhh
Confidence            999999999999642            4578888899998887 689999999 689999999999998865

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.90  E-value=6.7e-24  Score=182.31  Aligned_cols=219  Identities=18%  Similarity=0.083  Sum_probs=131.3

Q ss_pred             CeEEEEeecCCCccCCCCCHHHH-HHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHHHhcc-CccccccccCCcccC
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEG-EVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKIQE-GVFDITNEANGIKIG   77 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~-~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~-~~~~~~~~~~~~~~~   77 (245)
                      .|++||+||+|+...  . ..++ ..++ ..+. .++++||++|.|++++|+.+++.+.+.... ...........+.+.
T Consensus       111 ~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaiv  186 (439)
T 1mky_A          111 VDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIV  186 (439)
T ss_dssp             CCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEE
T ss_pred             CCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEE
Confidence            489999999998532  1 1222 3343 4565 689999999999999999999988643211 000001111122222


Q ss_pred             CCCCCCCCC-----CCCCCCCCCCCCcce--eeEEEEEECCeEEEEEEEcCCChhhhhhh-----------h-HhhccCC
Q psy13390         78 PQHSPNNPS-----LPSGSSGSSSGGGVE--FGARMITIDGKQIKLQIWDTAGQEAFRSI-----------T-RSYYRGA  138 (245)
Q Consensus        78 ~~~~~~~~~-----l~~~~~~~~~tig~~--~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-----------~-~~~~~~~  138 (245)
                      +.+...+++     .+.......+..|++  .....+.+++.  .+.+|||+|++++...           . ..+++.+
T Consensus       187 G~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~--~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~~a  264 (439)
T 1mky_A          187 GRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKA  264 (439)
T ss_dssp             CSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHC
T ss_pred             CCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCE--EEEEEECCCCccccccchhhHHHHHHHHHHHHHhhC
Confidence            222211111     122222233333433  33445666775  5789999998543322           1 3478899


Q ss_pred             cEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHH-----HHHHcCCcEEEeccCCCC
Q psy13390        139 AGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEV-----FAREHGLVFMETSAKLAT  213 (245)
Q Consensus       139 d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~  213 (245)
                      |++++|+|++++.+.++. .+...+..   .++|+++|+||||+...+..+.++...     +....+++++++||++|.
T Consensus       265 d~vllv~d~~~~~~~~~~-~i~~~l~~---~~~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~  340 (439)
T 1mky_A          265 DVVVIVLDATQGITRQDQ-RMAGLMER---RGRASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGW  340 (439)
T ss_dssp             SEEEEEEETTTCCCHHHH-HHHHHHHH---TTCEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTB
T ss_pred             CEEEEEEeCCCCCCHHHH-HHHHHHHH---cCCCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCC
Confidence            999999999987666552 22222222   468999999999987544433333322     222235789999999999


Q ss_pred             CHHHHHHHHHHHHHHH
Q psy13390        214 NVEEAFIDTAKEIYEK  229 (245)
Q Consensus       214 ~i~~~~~~i~~~i~~~  229 (245)
                      |++++|+.+.+.+...
T Consensus       341 gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          341 NIDRMIDAMNLAYASY  356 (439)
T ss_dssp             SHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhh
Confidence            9999999998876543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.90  E-value=1.4e-22  Score=155.31  Aligned_cols=136  Identities=26%  Similarity=0.360  Sum_probs=116.2

Q ss_pred             CCCCcceeeEEEEEECCeEEEEEEEcCCChhh-hhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCe
Q psy13390         95 SSGGGVEFGARMITIDGKQIKLQIWDTAGQEA-FRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSNMV  172 (245)
Q Consensus        95 ~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~-~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p  172 (245)
                      .+++|.++....+.+++..+.+.+|||+|.+. ++.+++.+++.+|++++|||++++.||+.+..|+..+.... ..++|
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~p  116 (192)
T 2cjw_A           37 XEVLGEDTYERTLMVDGESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIP  116 (192)
T ss_dssp             -GGGCTTEEEEEEEETTEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCC
T ss_pred             ccccceeEEEEEEEECCeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCe
Confidence            35678888788888999999999999999876 56677889999999999999999999999999988777653 25799


Q ss_pred             EEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       173 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      +++|+||+|+...+.+..+++..++..+++++++|||++|.||+++|+++++.+....
T Consensus       117 iilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~  174 (192)
T 2cjw_A          117 IILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR  174 (192)
T ss_dssp             EEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             EEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence            9999999999776778888888888888999999999999999999999999986544

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.90  E-value=1.9e-22  Score=153.18  Aligned_cols=135  Identities=24%  Similarity=0.464  Sum_probs=117.6

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHSNSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~  170 (245)
                      ..+.||++..+ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+. .|+..+.... .+
T Consensus        32 ~~~~~t~~~~~-~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~  109 (186)
T 1mh1_A           32 GEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-PN  109 (186)
T ss_dssp             SSCCCCSCCEE-EEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TT
T ss_pred             CCcCCccccee-EEEEEECCEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCChhhHHHHHHHHHHHHHHhC-CC
Confidence            45677887666 456678899999999999999999999999999999999999999999999987 6888887765 47


Q ss_pred             CeEEEEEeCCCCccC------------cccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +|+++|+||+|+...            +.+..+++..++...++ +++++||++|.|++++|+++.+.+.+
T Consensus       110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (186)
T 1mh1_A          110 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  180 (186)
T ss_dssp             SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHSC
T ss_pred             CCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHhc
Confidence            999999999998643            45677888889988887 89999999999999999999988753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.90  E-value=7.8e-23  Score=159.38  Aligned_cols=138  Identities=26%  Similarity=0.513  Sum_probs=103.3

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHSNS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~  169 (245)
                      ...+.||++..+ ...+.+++..+.+.||||+|++.+..++..+++++|++++|||++++.+++.+. .|+..+.... .
T Consensus        60 ~~~~~~t~~~~~-~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~  137 (214)
T 2j1l_A           60 PESYTPTVFERY-MVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFC-K  137 (214)
T ss_dssp             ----CCCCCEEE-EEEEEETTEEEEEEEEEC---------------CEEEEEEEEETTCHHHHHHHHHTHHHHHHHHC-S
T ss_pred             CCCCCCccceeE-EEEEEECCEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhC-C
Confidence            345778887666 556778899999999999999999999999999999999999999999999987 6888887765 5


Q ss_pred             CCeEEEEEeCCCCccCc------------ccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARR------------EVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      ++|+++|+||+|+...+            .+..+++..++...++ +++++||++|.|++++|+++.+.+.+..
T Consensus       138 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~~  211 (214)
T 2j1l_A          138 KVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSSR  211 (214)
T ss_dssp             SCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC-
T ss_pred             CCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence            79999999999996542            5677888899988887 8999999999999999999999987643

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.90  E-value=3.6e-22  Score=151.97  Aligned_cols=139  Identities=29%  Similarity=0.492  Sum_probs=117.7

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~  170 (245)
                      ..+.+|.+. .....+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+..... .+
T Consensus        31 ~~~~~t~~~-~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  109 (189)
T 4dsu_A           31 DEYDPTIED-SYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSED  109 (189)
T ss_dssp             CCCCTTCCE-EEEEEEEETTEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSC
T ss_pred             CCCCCCchh-eEEEEEEECCcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC
Confidence            345566654 3456677889999999999999999999999999999999999999999999999999998877543 57


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE  232 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  232 (245)
                      .|+++|+||+|+.. +....+....++...+++++++||++|.|++++|+++.+.+.+....
T Consensus       110 ~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~~~  170 (189)
T 4dsu_A          110 VPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHKEK  170 (189)
T ss_dssp             CCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhhhh
Confidence            99999999999963 55677888999999999999999999999999999999999766543

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=1.9e-22  Score=156.30  Aligned_cols=135  Identities=25%  Similarity=0.475  Sum_probs=112.7

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHH-HHHHHHHHhhcCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHL-TTWLEDARQHSNSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~-~~~~~~~~~~~~~~  170 (245)
                      ..+.||++.++.. .+.+++..+.+.||||+|++.+..++..+++++|++++|||++++.+++.+ ..|+..+.... ++
T Consensus        52 ~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~  129 (207)
T 2fv8_A           52 EVYVPTVFENYVA-DIEVDGKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDSPDSLENIPEKWVPEVKHFC-PN  129 (207)
T ss_dssp             -------CCEEEE-EEEETTEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTCHHHHHHHHHTHHHHHHHHS-TT
T ss_pred             CcCCCcccceEEE-EEEECCEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CC
Confidence            4567888887754 467889899999999999999999999999999999999999999999998 56888887765 57


Q ss_pred             CeEEEEEeCCCCccC------------cccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +|+++|+||+|+...            +.+..+++..++...++ +++++||++|.|++++|+++.+.+..
T Consensus       130 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          130 VPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             CCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             CCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            999999999999654            45677788888888887 89999999999999999999998864

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.90  E-value=6e-23  Score=160.28  Aligned_cols=140  Identities=28%  Similarity=0.430  Sum_probs=121.1

Q ss_pred             CCCCCCCCcceeeEEEEEEC-CeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q psy13390         91 SSGSSSGGGVEFGARMITID-GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~  169 (245)
                      ...+.+|+|.++....+... +..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+......
T Consensus        37 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  116 (218)
T 4djt_A           37 EKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRITCQNLARWVKEFQAVVGN  116 (218)
T ss_dssp             TCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCS
T ss_pred             CCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCC
Confidence            35568899988877776654 44589999999999999999999999999999999999999999999999999887766


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      ++|+++|+||+|+...+.+..+....++...+++++++||++|.|++++|+++.+.+.+..
T Consensus       117 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  177 (218)
T 4djt_A          117 EAPIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRP  177 (218)
T ss_dssp             SSCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred             CCCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence            7999999999999877778888888888889999999999999999999999999986644

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.89  E-value=4.4e-23  Score=161.46  Aligned_cols=137  Identities=31%  Similarity=0.528  Sum_probs=122.0

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||+|.++......+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+..|+..+.... .+
T Consensus        41 ~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~  119 (221)
T 3gj0_A           41 EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-EN  119 (221)
T ss_dssp             TCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHS-TT
T ss_pred             CCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhC-CC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999998876 57


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      +|+++|+||+|+.+... . .+...++...+++++++||++|.|++++|+++.+.+....
T Consensus       120 ~p~ilv~nK~Dl~~~~~-~-~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          120 IPIVLCGNKVDIKDRKV-K-AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP  177 (221)
T ss_dssp             CCEEEEEECTTSSSCSS-C-GGGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred             CCEEEEEECCccccccc-c-HHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence            99999999999965432 2 2455677778999999999999999999999999987654

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.89  E-value=1.1e-24  Score=168.02  Aligned_cols=136  Identities=49%  Similarity=0.800  Sum_probs=113.4

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV  172 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p  172 (245)
                      .+.||+|.++....+.+++..+.+.||||+|++.+..++..+++++|++++|||++++.+++.+..|+..+......++|
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p  140 (199)
T 3l0i_B           61 SYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVN  140 (199)
T ss_dssp             HHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSE
T ss_pred             CcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCC
Confidence            45688899998899999999999999999999999999999999999999999999999999999999999877666899


Q ss_pred             EEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       173 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +++|+||+|+...+.+..++...++..++++++++||++|.|++++|+++.+.+.+
T Consensus       141 ~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          141 KLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKK  196 (199)
T ss_dssp             EEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred             EEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            99999999998777666677788888899999999999999999999999877643

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=3.1e-22  Score=149.91  Aligned_cols=134  Identities=33%  Similarity=0.425  Sum_probs=116.3

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--C
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN--S  169 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~  169 (245)
                      ..+.||++.++ ...+.+++..+.+.+|||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+.....  .
T Consensus        30 ~~~~~t~~~~~-~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~  108 (172)
T 2erx_A           30 ESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVE  108 (172)
T ss_dssp             SSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---
T ss_pred             CCCCCCccccE-EEEEEECCEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCC
Confidence            35667887666 34566788889999999999999999999999999999999999999999998888887776542  4


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      ++|+++|+||+|+...+.+...+...++...+++++++||++|.|++++|+++.+.+
T Consensus       109 ~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (172)
T 2erx_A          109 SIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  165 (172)
T ss_dssp             CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             CCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence            789999999999987777888888888888899999999999999999999998755

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.89  E-value=4.7e-23  Score=156.08  Aligned_cols=134  Identities=23%  Similarity=0.499  Sum_probs=100.9

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHSNSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~~  170 (245)
                      ..+.||+|..+. ..+.+++..+.+.+|||+|++++..++..+++++|++++|||++++.+++.+. .|+..+.... .+
T Consensus        35 ~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~  112 (182)
T 3bwd_D           35 TDYVPTVFDNFS-ANVVVNGATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYA-PG  112 (182)
T ss_dssp             ----------CB-CCCC-------CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-TT
T ss_pred             CCCCCeeeeeEE-EEEEECCEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC-CC
Confidence            345667765553 23445677788999999999999999999999999999999999999999987 6988887765 47


Q ss_pred             CeEEEEEeCCCCccCcc----------cCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARRE----------VKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      +|+++|+||+|+...+.          +..+++..++..+++ +++++||++|.|++++|+++.+.++
T Consensus       113 ~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  180 (182)
T 3bwd_D          113 VPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIECSSKSQENVKGVFDAAIRVVL  180 (182)
T ss_dssp             CCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             CCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence            99999999999865443          467888889888886 8999999999999999999998764

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.89  E-value=1.1e-21  Score=149.79  Aligned_cols=137  Identities=30%  Similarity=0.504  Sum_probs=109.3

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCC
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNM  171 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~  171 (245)
                      .+.+|++..+ ...+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+..... .++
T Consensus        49 ~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~  127 (190)
T 3con_A           49 EYDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNSKSFADINLYREQIKRVKDSDDV  127 (190)
T ss_dssp             CCCTTCCEEE-EEEEEETTEEEEEEEEECCC-----------CTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred             ccCCccceEE-EEEEEECCEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCC
Confidence            4567776655 45677888899999999999999999999999999999999999999999999999988877653 579


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ  231 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  231 (245)
                      |+++|+||+|+.. +.+..++...++...+++++++||++|.|++++|+++.+.+.+.+.
T Consensus       128 p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  186 (190)
T 3con_A          128 PMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQYRM  186 (190)
T ss_dssp             CEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred             eEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999865 5567888899999999999999999999999999999999876543

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.89  E-value=8.9e-23  Score=157.89  Aligned_cols=136  Identities=23%  Similarity=0.448  Sum_probs=115.1

Q ss_pred             CCCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhc
Q psy13390         89 SGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHS  167 (245)
Q Consensus        89 ~~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~  167 (245)
                      .....+.+|++..+ ...+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.+++.+. .|+..+....
T Consensus        54 ~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~  132 (204)
T 4gzl_A           54 AFPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC  132 (204)
T ss_dssp             CCCC-CCCCSEEEE-EEEEECC-CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC
T ss_pred             CCCCCcCCeeccee-EEEEEECCEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHHhC
Confidence            33456778886554 566778888999999999999999999999999999999999999999999987 7888887776


Q ss_pred             CCCCeEEEEEeCCCCccCc------------ccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        168 NSNMVIMLIGNKSDLDARR------------EVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       168 ~~~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                       .++|+++|+||+|+...+            .+..+++..++...++ +++++||++|.|++++|+++.+.+
T Consensus       133 -~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~~  203 (204)
T 4gzl_A          133 -PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
T ss_dssp             -SSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHTT
T ss_pred             -CCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEEEEeeCCCCCCHHHHHHHHHHHh
Confidence             679999999999986543            2677888889988886 499999999999999999998754

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.88  E-value=2.2e-21  Score=144.17  Aligned_cols=133  Identities=32%  Similarity=0.549  Sum_probs=116.2

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCC
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNM  171 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~  171 (245)
                      .+.+|++..+ ...+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+..|+..+..... .++
T Consensus        31 ~~~~~~~~~~-~~~~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~  109 (166)
T 2ce2_X           31 ECDPTIEDSY-RKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDV  109 (166)
T ss_dssp             CCCTTCCEEE-EEEEEETTEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCC
T ss_pred             ccCCccceEE-EEEEEECCEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCC
Confidence            3456666554 55667888899999999999999999999999999999999999999999999999998877653 479


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      |+++|+||+|+.. +....++...++..++++++++||++|.|++++|+++.+.+.
T Consensus       110 p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          110 PMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             CEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             cEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            9999999999865 456778888899889999999999999999999999998874

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.88  E-value=4e-22  Score=153.12  Aligned_cols=136  Identities=14%  Similarity=0.267  Sum_probs=106.2

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC----
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN----  168 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~----  168 (245)
                      .+.||+|..+..    +++..+.+.||||+|++.+..++..+++++|++|+|||++++.+|+.+..|+..+.....    
T Consensus        46 ~~~~t~~~~~~~----~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~  121 (199)
T 4bas_A           46 HITATVGYNVET----FEKGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRE  121 (199)
T ss_dssp             CCCCCSSEEEEE----EEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSB
T ss_pred             ccccccceeEEE----EEeCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhc
Confidence            568899855432    334557899999999999999999999999999999999999999999999888866521    


Q ss_pred             ----CCCeEEEEEeCCCCccCcc---cCHHHHHH-HHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390        169 ----SNMVIMLIGNKSDLDARRE---VKKEEGEV-FAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE  232 (245)
Q Consensus       169 ----~~~piivv~nK~Dl~~~~~---~~~~~~~~-~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  232 (245)
                          .++|+++|+||+|+.....   +....... ++...+++++++||++|.||+++|+++.+.+.+...+
T Consensus       122 ~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~~~  193 (199)
T 4bas_A          122 LPGGGRVPFLFFANKMDAAGAKTAAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQSGK  193 (199)
T ss_dssp             CTTSCBCCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC--
T ss_pred             ccccCCCCEEEEEECcCCCCCCCHHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHhcc
Confidence                2689999999999975422   11111111 1144677899999999999999999999999876544

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.88  E-value=2e-21  Score=149.27  Aligned_cols=135  Identities=28%  Similarity=0.361  Sum_probs=116.6

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--C
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN--S  169 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~  169 (245)
                      ..+.||++.++. ..+.+++..+.+.||||+|++.+..++..+++.+|++++|||++++.+++.+..|+..+.....  .
T Consensus        35 ~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~  113 (199)
T 2gf0_A           35 DTYIPTIEDTYR-QVISCDKSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVE  113 (199)
T ss_dssp             CTTSCCCCEEEE-EEEEETTEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGG
T ss_pred             CcccCcccccee-EEEEECCEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCC
Confidence            456788886664 4567788899999999999999999999999999999999999999999998888877766542  4


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      ++|+++|+||+|+.. +.+..++...++..++++++++||++|.|++++|+++.+.+.+
T Consensus       114 ~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  171 (199)
T 2gf0_A          114 DIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLETR  171 (199)
T ss_dssp             GSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred             CCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            689999999999965 5567788888888899999999999999999999999987754

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.88  E-value=5.5e-22  Score=152.73  Aligned_cols=128  Identities=18%  Similarity=0.188  Sum_probs=100.1

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  170 (245)
                      ..+.||+|.+.  ..+.+++  +.+.+|||+|++.++.++..+++++|++++|||++++.+++.+..|+..+.... ..+
T Consensus        51 ~~~~~t~~~~~--~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~  126 (198)
T 1f6b_A           51 GQHVPTLHPTS--EELTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIAN  126 (198)
T ss_dssp             ----CCCCCSC--EEEEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred             CccCCCCCcee--EEEEECC--EEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCC
Confidence            35778888774  3455665  789999999999999999999999999999999999999999999998887653 257


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHH-----------------cCCcEEEeccCCCCCHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFARE-----------------HGLVFMETSAKLATNVEEAFIDTAKE  225 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~~~~~~~~Sa~~~~~i~~~~~~i~~~  225 (245)
                      +|+++|+||+|+..  .+..++...++..                 .++++++|||++|.|++++|+++.+.
T Consensus       127 ~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          127 VPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             SCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             CcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence            99999999999964  4566666666542                 34579999999999999999999764

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.87  E-value=1.5e-22  Score=150.71  Aligned_cols=129  Identities=21%  Similarity=0.309  Sum_probs=98.7

Q ss_pred             CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCe
Q psy13390         94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSNMV  172 (245)
Q Consensus        94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p  172 (245)
                      +.||+|..  ...+.+  ..+.+.+|||+|++.++.++..+++++|++++|||++++.+++....|+..+.... ..+.|
T Consensus        28 ~~~t~~~~--~~~~~~--~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p  103 (164)
T 1r8s_A           28 TIPTIGFN--VETVEY--KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV  103 (164)
T ss_dssp             CCCCSSCC--EEEEEC--SSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCE
T ss_pred             ccCcCcee--EEEEEE--CCEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCe
Confidence            35677733  233333  45789999999999999999999999999999999999999999999988876542 25799


Q ss_pred             EEEEEeCCCCccCcccCHHHHHHH-----HHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        173 IMLIGNKSDLDARREVKKEEGEVF-----AREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       173 iivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +++|+||+|+....  ..++....     +...+++++++||++|.|++++|+++.+.+.+
T Consensus       104 iilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          104 LLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             EEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             EEEEEECcCCcCCC--CHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence            99999999996532  22222211     11234679999999999999999999988754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.87  E-value=1.5e-20  Score=144.65  Aligned_cols=143  Identities=53%  Similarity=0.834  Sum_probs=125.4

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.||+|.++....+.+++..+.+.+|||+|++.++.++..+++.++++++|||+++..+++.+..|+..+......+.
T Consensus        32 ~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  111 (199)
T 2f9l_A           32 LESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSNI  111 (199)
T ss_dssp             C---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred             CCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC
Confidence            35678999999888899999999999999999999999999999999999999999999999998889888766554678


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCC
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGV  234 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~  234 (245)
                      |+++++||+|+...+....++++.++...++.++++||+++.|++++|+++.+.+.+......
T Consensus       112 ~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~~~~~  174 (199)
T 2f9l_A          112 VIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQ  174 (199)
T ss_dssp             EEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHTSC
T ss_pred             eEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHhhcc
Confidence            999999999997766777888899999999999999999999999999999999987665544

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.87  E-value=1.8e-21  Score=148.84  Aligned_cols=128  Identities=17%  Similarity=0.192  Sum_probs=105.1

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  170 (245)
                      ..+.||+|.+.  ..+.+++  +.+.+|||+|++.++.++..+++++|++++|||++++.+++.+..|+..+.... ..+
T Consensus        49 ~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  124 (190)
T 1m2o_B           49 ATLQPTWHPTS--EELAIGN--IKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKD  124 (190)
T ss_dssp             CCCCCCCSCEE--EEEEETT--EEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred             CccccCCCCCe--EEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHHHHHHHHHHHHHHcchhhcC
Confidence            35778888764  4455565  789999999999999999999999999999999999999999999998887643 257


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHH------------cCCcEEEeccCCCCCHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFARE------------HGLVFMETSAKLATNVEEAFIDTAKE  225 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~~~Sa~~~~~i~~~~~~i~~~  225 (245)
                      .|+++|+||+|+..  .+..++.......            .+++++++||++|.|++++|+++.+.
T Consensus       125 ~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          125 VPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             CCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence            99999999999964  4556666554432            34679999999999999999999764

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.87  E-value=4.2e-22  Score=149.20  Aligned_cols=130  Identities=19%  Similarity=0.308  Sum_probs=102.4

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCC
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNM  171 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~  171 (245)
                      .+.||+|.++  ..+.++  ...+.+|||+|++.+...+..+++++|++++|||++++.++.....|+..+..... .++
T Consensus        34 ~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  109 (171)
T 1upt_A           34 TTIPTIGFNV--ETVTYK--NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKA  109 (171)
T ss_dssp             CCCCCSSEEE--EEEEET--TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTC
T ss_pred             CcCCcCccce--EEEEEC--CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCC
Confidence            4567887554  344444  46799999999999999999999999999999999999999999988887766432 579


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHH-----HHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEV-----FAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      |+++|+||+|+....  ...+...     .+...+++++++||++|.|++++|+++.+.+.+
T Consensus       110 piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          110 ILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             EEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence            999999999996542  1222221     122345689999999999999999999988754

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.86  E-value=2.3e-22  Score=153.05  Aligned_cols=136  Identities=20%  Similarity=0.354  Sum_probs=102.9

Q ss_pred             CCCCCCCcceeeEEEEEE---CCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhc
Q psy13390         92 SGSSSGGGVEFGARMITI---DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR-ETFNHLTTWLEDARQHS  167 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~---~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~  167 (245)
                      ..+.||+|.++....+.+   ++..+.+.+|||+|+++|..+++.++++++++++|||++++ .+++.+..|+..+....
T Consensus        31 ~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~  110 (184)
T 2zej_A           31 GMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDLSKGQAEVDAMKPWLFNIKARA  110 (184)
T ss_dssp             ------CSEEEEEEEC---------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEGGGCHHHHHTHHHHHHHHHHHC
T ss_pred             CCcceeccEEeEEeeeccccCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeCCcchhHHHHHHHHHHHHHhhC
Confidence            456789999887766554   34677899999999999999999999999999999999987 57999999999887665


Q ss_pred             CCCCeEEEEEeCCCCccCcccC---HHHHHHHHHHcCCc----EEEeccCCCC-CHHHHHHHHHHHHHH
Q psy13390        168 NSNMVIMLIGNKSDLDARREVK---KEEGEVFAREHGLV----FMETSAKLAT-NVEEAFIDTAKEIYE  228 (245)
Q Consensus       168 ~~~~piivv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~Sa~~~~-~i~~~~~~i~~~i~~  228 (245)
                       ++.|+++|+||+|+...+.+.   .+....++..++++    ++++||++|. +++++++.+.+.+.+
T Consensus       111 -~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          111 -SSSPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             -TTCEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             -CCCcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence             578999999999996544322   23344555556776    9999999997 999999999887755

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.86  E-value=2.2e-21  Score=147.26  Aligned_cols=132  Identities=22%  Similarity=0.287  Sum_probs=101.9

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  170 (245)
                      ..+.||+|.++  ..+.++  .+.+.+|||+|++.++..+..+++++|++++|||++++.+++.+..|+..+.... ..+
T Consensus        42 ~~~~~t~g~~~--~~~~~~--~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  117 (181)
T 1fzq_A           42 SHITPTQGFNI--KSVQSQ--GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSC  117 (181)
T ss_dssp             EEEEEETTEEE--EEEEET--TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTT
T ss_pred             CcccCcCCeEE--EEEEEC--CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcC
Confidence            35678888543  344454  4679999999999999999999999999999999999999999999888775542 257


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFA-----REHGLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      .|+++|+||+|+.+...  .++.....     ...+++++++||++|.|++++|+++.+.+.++
T Consensus       118 ~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          118 VPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNAK  179 (181)
T ss_dssp             CCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC---
T ss_pred             CCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHhc
Confidence            89999999999975432  22222211     12346799999999999999999999887553

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.86  E-value=1.6e-20  Score=155.40  Aligned_cols=137  Identities=23%  Similarity=0.440  Sum_probs=119.8

Q ss_pred             CCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcC
Q psy13390         90 GSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHSN  168 (245)
Q Consensus        90 ~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~  168 (245)
                      ....+.+|++..+ ...+.+++..+.+.+|||+|++.+...+..+++.+|++++|||++++.+++.+. .|+..+.... 
T Consensus       180 ~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-  257 (332)
T 2wkq_A          180 FPGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVSPASFHHVRAKWYPEVRHHC-  257 (332)
T ss_dssp             CCCSCCCCSEEEE-EEEEEETTEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHC-
T ss_pred             CCcccCCccccee-EEEEEECCEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCCHHHHHHHHHHHHHHHHhhC-
Confidence            3456788888766 556778899999999999999999999999999999999999999999999987 6888887765 


Q ss_pred             CCCeEEEEEeCCCCccC------------cccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        169 SNMVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       169 ~~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      .++|+++|+||+|+...            +.+..+++..++...++ +++++||++|.|++++|+++.+.++.
T Consensus       258 ~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          258 PNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             TTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             CCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence            47999999999998643            46778888999999987 89999999999999999999988754

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.85  E-value=1.5e-20  Score=143.54  Aligned_cols=131  Identities=16%  Similarity=0.230  Sum_probs=104.6

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC---
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN---  168 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~---  168 (245)
                      ..+.||+|..  ...+.+++  +.+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+.....   
T Consensus        49 ~~~~~t~~~~--~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  124 (190)
T 2h57_A           49 QNILPTIGFS--IEKFKSSS--LSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKH  124 (190)
T ss_dssp             SSCCCCSSEE--EEEEECSS--CEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTT
T ss_pred             CCcCCcccee--EEEEEECC--EEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcc
Confidence            4467888743  34444444  6799999999999999999999999999999999999999999999888876543   


Q ss_pred             CCCeEEEEEeCCCCccCcccCHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        169 SNMVIMLIGNKSDLDARREVKKEEGEVFAR-----EHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       169 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      .++|+++|+||+|+...  ...++......     ..+++++++||++|.|++++|+++.+.+.+
T Consensus       125 ~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  187 (190)
T 2h57_A          125 RRIPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQT  187 (190)
T ss_dssp             SCCCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             CCCeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            47999999999999643  34455555442     235689999999999999999999988744

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.85  E-value=1.1e-20  Score=143.63  Aligned_cols=132  Identities=20%  Similarity=0.264  Sum_probs=105.3

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~  169 (245)
                      ...+.||+|.+.  ..+.++  .+.+.+|||+|++++...+..+++++|++++|||++++.+++.+..|+..+.... ..
T Consensus        43 ~~~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~  118 (186)
T 1ksh_A           43 VDTISPTLGFNI--KTLEHR--GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLA  118 (186)
T ss_dssp             CSSCCCCSSEEE--EEEEET--TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGT
T ss_pred             CCcccccCccce--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHHHHHHHHHHHHHHhChhcC
Confidence            556788988554  344444  4679999999999999999999999999999999999999999999988876653 25


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFA-----REHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      ++|+++|+||+|+....  ..++.....     ...+++++++||++|.|++++|+++.+.+.+
T Consensus       119 ~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  180 (186)
T 1ksh_A          119 GATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  180 (186)
T ss_dssp             TCEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CCcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            79999999999996543  223332221     1245679999999999999999999998754

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.85  E-value=8e-22  Score=150.46  Aligned_cols=131  Identities=19%  Similarity=0.297  Sum_probs=102.8

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  170 (245)
                      ..+.||+|.++..  +.  ...+.+.||||+|++.+..++..+++++|++++|||++++.+++.+..|+..+.... ..+
T Consensus        49 ~~~~~t~~~~~~~--~~--~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~  124 (188)
T 1zd9_A           49 EDMIPTVGFNMRK--IT--KGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG  124 (188)
T ss_dssp             CSCCCCCSEEEEE--EE--ETTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred             CccCCCCceeEEE--EE--eCCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCC
Confidence            4577899987753  23  345779999999999999999999999999999999999999999999988876642 257


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFA-----REHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +|+++|+||+|+....  ..++.....     ...+++++++||++|.|++++|+++.+.+.+
T Consensus       125 ~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  185 (188)
T 1zd9_A          125 IPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSKS  185 (188)
T ss_dssp             CCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC-
T ss_pred             CCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            9999999999996432  222222211     1234579999999999999999999987644

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.85  E-value=9.7e-22  Score=163.43  Aligned_cols=133  Identities=16%  Similarity=0.213  Sum_probs=108.4

Q ss_pred             CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHH
Q psy13390         94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITR----------RETFNHLTTWLEDA  163 (245)
Q Consensus        94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~~  163 (245)
                      +.||+|.+.  ..+.++  .+.+++|||+|++.++..|..||++++++|||||+++          ..++++...|+..+
T Consensus       177 ~~~T~Gi~~--~~~~~~--~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i  252 (353)
T 1cip_A          177 RVKTTGIVE--THFTFK--DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSI  252 (353)
T ss_dssp             CCCCCSEEE--EEEEET--TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHH
T ss_pred             cCceeceEE--EEEeeC--CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHH
Confidence            456777553  333443  5789999999999999999999999999999999998          56788888899888


Q ss_pred             HhhcC-CCCeEEEEEeCCCCccCc---------------ccCHHHHHHHHH-----------HcCCcEEEeccCCCCCHH
Q psy13390        164 RQHSN-SNMVIMLIGNKSDLDARR---------------EVKKEEGEVFAR-----------EHGLVFMETSAKLATNVE  216 (245)
Q Consensus       164 ~~~~~-~~~piivv~nK~Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~  216 (245)
                      ..... .++|++|++||+|+...+               .++.+++..++.           ..++.+++|||++|.||+
T Consensus       253 ~~~~~~~~~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~  332 (353)
T 1cip_A          253 CNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQ  332 (353)
T ss_dssp             HTCGGGTTSEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHH
T ss_pred             HcCccccCCcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHH
Confidence            76532 679999999999985332               356778888776           356779999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy13390        217 EAFIDTAKEIYEKI  230 (245)
Q Consensus       217 ~~~~~i~~~i~~~~  230 (245)
                      ++|+++.+.+....
T Consensus       333 ~vF~~v~~~i~~~~  346 (353)
T 1cip_A          333 FVFDAVTDVIIKNN  346 (353)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999987643

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.85  E-value=8.9e-22  Score=151.23  Aligned_cols=129  Identities=22%  Similarity=0.297  Sum_probs=102.5

Q ss_pred             CCCcceeeEEEEE--EC-CeEEEEEEEcCCChhhhhhhh---HhhccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhc
Q psy13390         96 SGGGVEFGARMIT--ID-GKQIKLQIWDTAGQEAFRSIT---RSYYRGAAGALLVYDITRR--ETFNHLTTWLEDARQHS  167 (245)
Q Consensus        96 ~tig~~~~~~~~~--~~-~~~~~~~l~Dt~G~~~~~~~~---~~~~~~~d~vi~v~d~~~~--~s~~~~~~~~~~~~~~~  167 (245)
                      +|+|.++......  +. +..+.+.+|||+|+++|....   ..+++++|++|+|||++++  .+++.+..|+..+....
T Consensus        48 ~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~  127 (196)
T 3llu_A           48 ETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDAQDDYMEALTRLHITVSKAYKVN  127 (196)
T ss_dssp             GGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEETTSCCHHHHHHHHHHHHHHHHHC
T ss_pred             ceeeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEECCCchHHHHHHHHHHHHHHHhcC
Confidence            5555555444433  33 667889999999999987766   8999999999999999997  67777777887775444


Q ss_pred             CCCCeEEEEEeCCCCcc-------CcccCHHHHHHHHH----HcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        168 NSNMVIMLIGNKSDLDA-------RREVKKEEGEVFAR----EHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       168 ~~~~piivv~nK~Dl~~-------~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                       .++|+++|+||+|+..       .+.+..+....++.    ..+++++++||++ .||+++|..+++.+
T Consensus       128 -~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~l  195 (196)
T 3llu_A          128 -PDMNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQKL  195 (196)
T ss_dssp             -TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHHT
T ss_pred             -CCCcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHHh
Confidence             6799999999999754       23455566677777    6778899999999 99999999999865

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.85  E-value=1.4e-21  Score=149.70  Aligned_cols=129  Identities=20%  Similarity=0.294  Sum_probs=95.3

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCC
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSNM  171 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~  171 (245)
                      .+.||+|..  ...+.+.  .+.+.+|||+|++.++.++..+++++|++++|||++++.+++.+..|+..+.... ..++
T Consensus        56 ~~~~t~~~~--~~~~~~~--~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~  131 (192)
T 2b6h_A           56 TTIPTIGFN--VETVEYK--NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVQESADELQKMLQEDELRDA  131 (192)
T ss_dssp             EEEEETTEE--EEEEEET--TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTC
T ss_pred             ccCCcCcee--EEEEEEC--CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCC
Confidence            356788733  3334443  4789999999999999999999999999999999999999999999988876543 2579


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHH-----HHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVF-----AREHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      |+++|+||+|+.+..  ..++....     +...+++++++||++|.|++++|+++.+.+.
T Consensus       132 piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          132 VLLVFANKQDMPNAM--PVSELTDKLGLQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             EEEEEEECTTSTTCC--CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred             eEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence            999999999996532  22222211     1123457999999999999999999998763

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.76  E-value=5.1e-23  Score=159.11  Aligned_cols=134  Identities=24%  Similarity=0.475  Sum_probs=112.4

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHH-HHHHHHHhhcCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLT-TWLEDARQHSNS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~-~~~~~~~~~~~~  169 (245)
                      ...+.||++..+ ...+.+++..+.+.+|||+|++++...+..+++++|++++|||++++.+++.+. .|+..+.... .
T Consensus        56 ~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~-~  133 (204)
T 3th5_A           56 PGEYIPTVFDNY-SANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVSPASFENVRAKWYPEVRHHC-P  133 (204)
Confidence            345678887666 455667788889999999999999999999999999999999999999999887 7887776654 4


Q ss_pred             CCeEEEEEeCCCCccCc------------ccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARR------------EVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      ++|+++|+||+|+...+            .+..++...++...++ +++++||++|.|++++|+++.+.+
T Consensus       134 ~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~l~~~l~~~i  203 (204)
T 3th5_A          134 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAV  203 (204)
Confidence            79999999999996532            4555667777877887 899999999999999999998765

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.85  E-value=1.9e-20  Score=142.57  Aligned_cols=130  Identities=21%  Similarity=0.270  Sum_probs=100.6

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCC
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSNM  171 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~  171 (245)
                      .+.||+|.+.  ..+.+++  +.+.+|||+|++++..++..+++++|++++|||++++.+++.+..|+..+.... ..+.
T Consensus        43 ~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  118 (187)
T 1zj6_A           43 HTSPTIGSNV--EEIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKA  118 (187)
T ss_dssp             EEECCSCSSC--EEEEETT--EEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTC
T ss_pred             cCcCCCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCC
Confidence            5678888554  3444544  789999999999999999999999999999999999999999999998887653 2579


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAR-----EHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      |+++|+||+|+...  ...++......     ..+++++++||++|.|++++|+++++.+..
T Consensus       119 piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (187)
T 1zj6_A          119 GLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLKI  178 (187)
T ss_dssp             EEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred             eEEEEEECCCCcCC--CCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            99999999999643  23344433322     245689999999999999999999987744

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.85  E-value=1.5e-21  Score=148.96  Aligned_cols=131  Identities=18%  Similarity=0.291  Sum_probs=102.5

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCC
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNM  171 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~  171 (245)
                      .+.||+|...  ..+.++  .+.+.+|||+|+++++..+..+++++|++++|||++++.+++....|+..+..... .++
T Consensus        49 ~~~~t~~~~~--~~~~~~--~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~  124 (189)
T 2x77_A           49 TTVPTVGVNL--ETLQYK--NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKS  124 (189)
T ss_dssp             EECSSTTCCE--EEEEET--TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTC
T ss_pred             CcCCCCceEE--EEEEEC--CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCC
Confidence            4577888543  344444  46799999999999999999999999999999999999999999988888766432 579


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHH-----HHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEV-----FAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      |+++|+||+|+....  ..++...     .+...+++++++||++|.|++++|+++.+.+.+.
T Consensus       125 piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          125 LLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             EEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             eEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence            999999999996542  2222221     1122356799999999999999999999988653

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.84  E-value=1.4e-19  Score=138.44  Aligned_cols=136  Identities=54%  Similarity=0.852  Sum_probs=121.9

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||+|.++....+.+++..+.+.+|||+|++++..++..+++.++++++|||.++..+++.+..|+..+......+
T Consensus        55 ~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  134 (191)
T 1oix_A           55 NLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADSN  134 (191)
T ss_dssp             CCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred             CCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC
Confidence            34678999999988899999999999999999999999999999999999999999999999998888988776655467


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      .|+++++||+|+...+....++++.++...++.++++||+++.|++++|+++.+.+
T Consensus       135 ~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          135 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            89999999999976666778889999999999999999999999999999998765

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.84  E-value=1.4e-20  Score=142.55  Aligned_cols=128  Identities=21%  Similarity=0.274  Sum_probs=101.7

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  170 (245)
                      ..+.||+|.++.  .+.+++  +.+.+|||+|+++++.++..+++++|++++|||++++.+++.+..|+..+.... ..+
T Consensus        47 ~~~~~t~~~~~~--~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~  122 (181)
T 2h17_A           47 VHTSPTIGSNVE--EIVINN--TRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRK  122 (181)
T ss_dssp             EEEECCSSSSCE--EEEETT--EEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTT
T ss_pred             CccCCcCceeeE--EEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCC
Confidence            456788886653  444544  789999999999999999999999999999999999999999999988877642 257


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFA-----REHGLVFMETSAKLATNVEEAFIDTAKE  225 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  225 (245)
                      +|+++|+||+|+...  ...++.....     ...+++++++||++|.|++++|+++.+.
T Consensus       123 ~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  180 (181)
T 2h17_A          123 AGLLIFANKQDVKEC--MTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSR  180 (181)
T ss_dssp             CEEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHTC
T ss_pred             CeEEEEEECCCcccC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHhh
Confidence            999999999999643  2333333332     2234679999999999999999999764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.84  E-value=6.3e-21  Score=144.51  Aligned_cols=133  Identities=20%  Similarity=0.282  Sum_probs=101.8

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  170 (245)
                      ..+.||+|...  ..+.+++  ..+.+|||+|++.+...+..+++++|++++|||++++.+++.+..|+..+.... ..+
T Consensus        44 ~~~~~t~~~~~--~~~~~~~--~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  119 (183)
T 1moz_A           44 VTTKPTIGFNV--ETLSYKN--LKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQD  119 (183)
T ss_dssp             EEECSSTTCCE--EEEEETT--EEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSS
T ss_pred             CccCCcCccce--EEEEECC--EEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCC
Confidence            45678888554  3444544  779999999999999999999999999999999999999999999988887654 367


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHH-----HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAR-----EHGLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      +|+++|+||+|+...  ...++......     ..+++++++||++|.|++++|+++.+.+.+++
T Consensus       120 ~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~q  182 (183)
T 1moz_A          120 AALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ  182 (183)
T ss_dssp             CEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhcc
Confidence            999999999998643  23333333221     12457999999999999999999999987653

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.84  E-value=7.2e-22  Score=161.18  Aligned_cols=129  Identities=17%  Similarity=0.199  Sum_probs=100.7

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhh---hhHhhccCCcEEEEEEeCCCh--hhHHHHHHHHHHHHhhc
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRS---ITRSYYRGAAGALLVYDITRR--ETFNHLTTWLEDARQHS  167 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~d~vi~v~d~~~~--~s~~~~~~~~~~~~~~~  167 (245)
                      .+.||+|.++..    ++ ..+++++|||||+++|+.   .++.||++++++|+|||++++  .+++....|+..+....
T Consensus        30 ~~~~Tig~~~~~----v~-~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~  104 (331)
T 3r7w_B           30 YLESTSNPSLEH----FS-TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVN  104 (331)
T ss_dssp             TCCCCCSCCCEE----EC-SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHC
T ss_pred             eecCeeeeeeEE----Ec-cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcC
Confidence            467899988853    23 347899999999999964   468899999999999999987  33344444455554444


Q ss_pred             CCCCeEEEEEeCCCCccC-------cccCHHHHHHHHHH----cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        168 NSNMVIMLIGNKSDLDAR-------REVKKEEGEVFARE----HGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       168 ~~~~piivv~nK~Dl~~~-------~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                       +++|++++|||+|+...       +.+..+++..++..    .++++++|||++ .+|.+.|..+++.+.+
T Consensus       105 -~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          105 -PSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             -TTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred             -CCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence             68999999999999653       34666777777775    578899999998 5999999999987754

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.83  E-value=1.5e-20  Score=156.29  Aligned_cols=120  Identities=15%  Similarity=0.184  Sum_probs=95.7

Q ss_pred             eEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCC
Q psy13390        112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDIT----------RRETFNHLTTWLEDARQHSN-SNMVIMLIGNKS  180 (245)
Q Consensus       112 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~  180 (245)
                      +.+.+++|||+|++.++.+|..||++++++|||||++          +..+++....|+..+..... .++|++||+||+
T Consensus       181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            6789999999999999999999999999999999998          77899999999988876532 679999999999


Q ss_pred             CCccCcc--c-------------------CHHHHHHHHHH----------------cCCcEEEeccCCCCCHHHHHHHHH
Q psy13390        181 DLDARRE--V-------------------KKEEGEVFARE----------------HGLVFMETSAKLATNVEEAFIDTA  223 (245)
Q Consensus       181 Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~~~~~i~  223 (245)
                      |+..++.  +                   +.+++..++..                ..+.+++|||+++.||+++|.++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            9853321  1                   14556665432                123468999999999999999999


Q ss_pred             HHHHHHHh
Q psy13390        224 KEIYEKIQ  231 (245)
Q Consensus       224 ~~i~~~~~  231 (245)
                      +.+.+...
T Consensus       341 ~~I~~~~l  348 (354)
T 2xtz_A          341 ETLRRRNL  348 (354)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99876543

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=99.82  E-value=4.5e-20  Score=155.09  Aligned_cols=130  Identities=17%  Similarity=0.194  Sum_probs=102.2

Q ss_pred             CCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHHHhh
Q psy13390         97 GGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITR----------RETFNHLTTWLEDARQH  166 (245)
Q Consensus        97 tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~~~~~  166 (245)
                      |+|.+.  ..+.+++  +.+++|||+|++.++.+|..||++++++|||||+++          ..+|+....|+..+...
T Consensus       204 TiGi~~--~~~~~~~--v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~  279 (402)
T 1azs_C          204 TSGIFE--TKFQVDK--VNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNN  279 (402)
T ss_dssp             CCSEEE--EEEEETT--EEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTC
T ss_pred             eeeeEE--EEeecCC--ccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhc
Confidence            455443  3344443  789999999999999999999999999999999999          88999999999998775


Q ss_pred             c-CCCCeEEEEEeCCCCccCcc---c---------------------------CHHHHHHHH-----HH--------cCC
Q psy13390        167 S-NSNMVIMLIGNKSDLDARRE---V---------------------------KKEEGEVFA-----RE--------HGL  202 (245)
Q Consensus       167 ~-~~~~piivv~nK~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~  202 (245)
                      . ..++|++||+||+|+...+.   +                           ..+++..++     ..        ..+
T Consensus       280 ~~~~~~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~  359 (402)
T 1azs_C          280 RWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYC  359 (402)
T ss_dssp             TTCSSCCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCE
T ss_pred             ccCCCCeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCccc
Confidence            3 36799999999999854322   1                           134455543     21        245


Q ss_pred             cEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        203 VFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       203 ~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      .+++|||+++.||+++|.++.+.+....
T Consensus       360 ~~~~TSA~d~~nV~~vF~~v~~~I~~~~  387 (402)
T 1azs_C          360 YPHFTCAVDTENIRRVFNDCRDIIQRMH  387 (402)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEEeecCcCHHHHHHHHHHHHHHHH
Confidence            5789999999999999999998887654

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.82  E-value=1.6e-20  Score=153.92  Aligned_cols=132  Identities=13%  Similarity=0.163  Sum_probs=105.6

Q ss_pred             CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHH
Q psy13390         94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDIT----------RRETFNHLTTWLEDA  163 (245)
Q Consensus        94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~~  163 (245)
                      ..||+|..  ...+.+  +.+.+++|||+|+++++.+|..||++++++|||||++          +..++++...|+..+
T Consensus       151 r~~TiGi~--~~~~~~--~~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i  226 (327)
T 3ohm_A          151 RVPTTGII--EYPFDL--QSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTI  226 (327)
T ss_dssp             CCCCCSEE--EEEEEE--TTEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHH
T ss_pred             cCceeeEE--EEEEEe--eceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHH
Confidence            56777743  233333  4588999999999999999999999999999999654          667888888888888


Q ss_pred             HhhcC-CCCeEEEEEeCCCCccCc----------------ccCHHHHHHHHH----------HcCCcEEEeccCCCCCHH
Q psy13390        164 RQHSN-SNMVIMLIGNKSDLDARR----------------EVKKEEGEVFAR----------EHGLVFMETSAKLATNVE  216 (245)
Q Consensus       164 ~~~~~-~~~piivv~nK~Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~  216 (245)
                      ..... .++|++|++||+|+...+                ..+.+++..++.          ..++.+++|||+++.||+
T Consensus       227 ~~~~~~~~~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~  306 (327)
T 3ohm_A          227 ITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIR  306 (327)
T ss_dssp             HTSGGGTTCEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHH
T ss_pred             hhhhccCCceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHH
Confidence            76543 679999999999986533                356777777742          345668999999999999


Q ss_pred             HHHHHHHHHHHHH
Q psy13390        217 EAFIDTAKEIYEK  229 (245)
Q Consensus       217 ~~~~~i~~~i~~~  229 (245)
                      .+|..+.+.+++.
T Consensus       307 ~vF~~v~~~Il~~  319 (327)
T 3ohm_A          307 FVFAAVKDTILQL  319 (327)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999999764

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.81  E-value=3.8e-20  Score=154.37  Aligned_cols=135  Identities=18%  Similarity=0.183  Sum_probs=100.9

Q ss_pred             CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCC----------hhhHHHHHHHHHHH
Q psy13390         94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITR----------RETFNHLTTWLEDA  163 (245)
Q Consensus        94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~s~~~~~~~~~~~  163 (245)
                      ..||+|.+.  ..+.++  .+.+.+|||+|++.++..|..|+++++++|||||+++          ..++++...|+..+
T Consensus       185 r~~T~Gi~~--~~~~~~--~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i  260 (362)
T 1zcb_A          185 RRPTKGIHE--YDFEIK--NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETI  260 (362)
T ss_dssp             CCCCSSEEE--EEEEET--TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHH
T ss_pred             cCCccceEE--EEeeeC--CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHH
Confidence            346677654  334444  4789999999999999999999999999999999999          77899999999888


Q ss_pred             Hhhc-CCCCeEEEEEeCCCCccCc----------------ccCHHHHHHHHH-----------HcCCcEEEeccCCCCCH
Q psy13390        164 RQHS-NSNMVIMLIGNKSDLDARR----------------EVKKEEGEVFAR-----------EHGLVFMETSAKLATNV  215 (245)
Q Consensus       164 ~~~~-~~~~piivv~nK~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i  215 (245)
                      .... ..++|+||++||+|+..++                .++.+++..++.           ...+.+++|||+++.||
T Consensus       261 ~~~~~~~~~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV  340 (362)
T 1zcb_A          261 VNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENI  340 (362)
T ss_dssp             HTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHH
T ss_pred             hcchhhCCCCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhH
Confidence            7653 2679999999999986422                256677777652           34577899999999999


Q ss_pred             HHHHHHHHHHHHHHHhc
Q psy13390        216 EEAFIDTAKEIYEKIQE  232 (245)
Q Consensus       216 ~~~~~~i~~~i~~~~~~  232 (245)
                      +++|.++.+.+.+...+
T Consensus       341 ~~vF~~v~~~i~~~~l~  357 (362)
T 1zcb_A          341 RLVFRDVKDTILHDNLK  357 (362)
T ss_dssp             HHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999765543

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.81  E-value=5.9e-21  Score=152.64  Aligned_cols=117  Identities=24%  Similarity=0.316  Sum_probs=93.1

Q ss_pred             ECCeEEEEEEEc-----------------------CCChhhhhhhhHhhcc---------------------CCcEEEEE
Q psy13390        109 IDGKQIKLQIWD-----------------------TAGQEAFRSITRSYYR---------------------GAAGALLV  144 (245)
Q Consensus       109 ~~~~~~~~~l~D-----------------------t~G~~~~~~~~~~~~~---------------------~~d~vi~v  144 (245)
                      +++..+.+.|||                       ++|+++|..++..+++                     +||++|+|
T Consensus        90 ~~~~~~~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV  169 (255)
T 3c5h_A           90 EDCVECKMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLG  169 (255)
T ss_dssp             ------CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEE
T ss_pred             cCCcEEEEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEE
Confidence            456788999999                       7888888888888888                     89999999


Q ss_pred             EeCCCh--hhHHHHHHHHHHHHhh-cCCCCeEEEEEeCCCCccCcccCHHHHHHHHHH-cCCcEEEeccCCCCCHHHHHH
Q psy13390        145 YDITRR--ETFNHLTTWLEDARQH-SNSNMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFI  220 (245)
Q Consensus       145 ~d~~~~--~s~~~~~~~~~~~~~~-~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~  220 (245)
                      ||++++  .+|+.+..|+..+... ...++|+++|+||+|+...+.+  ++...++.. .+++++++||++|.|++++|+
T Consensus       170 ~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~g~gv~elf~  247 (255)
T 3c5h_A          170 IDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARSNVNVDLAFS  247 (255)
T ss_dssp             EECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTTTBSHHHHHH
T ss_pred             EECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCCCCCHHHHHH
Confidence            999998  9999999999988765 2357999999999999654443  566677765 478999999999999999999


Q ss_pred             HHHHHHH
Q psy13390        221 DTAKEIY  227 (245)
Q Consensus       221 ~i~~~i~  227 (245)
                      ++++.+.
T Consensus       248 ~l~~~l~  254 (255)
T 3c5h_A          248 TLVQLID  254 (255)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhc
Confidence            9988763

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.81  E-value=7.4e-20  Score=150.56  Aligned_cols=135  Identities=16%  Similarity=0.224  Sum_probs=104.9

Q ss_pred             CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCC----------ChhhHHHHHHHHHHH
Q psy13390         94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDIT----------RRETFNHLTTWLEDA  163 (245)
Q Consensus        94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~s~~~~~~~~~~~  163 (245)
                      +.||+|..    ...+..+.+.+++|||+|+++++.+|..||++++++|||||++          +..++.+...|+..+
T Consensus       145 ~~~TiGi~----~~~~~~~~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i  220 (340)
T 4fid_A          145 RTKTTGIH----EYDFVVKDIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDI  220 (340)
T ss_dssp             CCCCCSCE----EEEEESSSCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHH
T ss_pred             ccceeeeE----EEEEEeeeeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHH
Confidence            44556643    3344445688999999999999999999999999999999998          678898888888888


Q ss_pred             HhhcC-CCCeEEEEEeCCCCccCc---------------ccCHHHHHHHHHH---------------------------c
Q psy13390        164 RQHSN-SNMVIMLIGNKSDLDARR---------------EVKKEEGEVFARE---------------------------H  200 (245)
Q Consensus       164 ~~~~~-~~~piivv~nK~Dl~~~~---------------~~~~~~~~~~~~~---------------------------~  200 (245)
                      ..... .++|++|++||+|+..++               ....+++..++..                           .
T Consensus       221 ~~~~~~~~~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (340)
T 4fid_A          221 MTNEFLKGAVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNE  300 (340)
T ss_dssp             HHCGGGTTSEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------C
T ss_pred             hhhhccCCCeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCc
Confidence            76543 679999999999985321               1234555444322                           2


Q ss_pred             CCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390        201 GLVFMETSAKLATNVEEAFIDTAKEIYEKIQE  232 (245)
Q Consensus       201 ~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  232 (245)
                      .+.++++||+++.||+.+|..+.+.|++...+
T Consensus       301 ~iy~h~TsA~dt~nv~~vF~~v~~~Il~~l~~  332 (340)
T 4fid_A          301 KVYTNPTNATDGSNIKRVFMLAVDVIMKNMAA  332 (340)
T ss_dssp             EEEEEEECTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEEeeCcHHHHHHHHHHHHHHHHHHHH
Confidence            35689999999999999999999999874433

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.79  E-value=4.6e-19  Score=145.34  Aligned_cols=129  Identities=20%  Similarity=0.294  Sum_probs=104.7

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhh-----hhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHH---H
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAF-----RSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA---R  164 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~-----~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~---~  164 (245)
                      .+.+|++.++....  +.+ .+.+.+|||||++.+     ..++..+++++|++++|||++++.+++++..|...+   .
T Consensus        34 ~~~~Ti~~~~~~~~--~~~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~  110 (307)
T 3r7w_A           34 RLGATIDVEHSHLR--FLG-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIHVFDVESTEVLKDIEIFAKALKQLR  110 (307)
T ss_dssp             GCCCCCSEEEEEEE--ETT-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEEEEETTCSCHHHHHHHHHHHHHHHH
T ss_pred             CcCCccceEEEEEE--eCC-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEEEEECCChhhHHHHHHHHHHHHHHH
Confidence            56778887776433  434 578999999999988     678889999999999999999999999887765444   3


Q ss_pred             hhcCCCCeEEEEEeCCCCcc--Ccc----cCHHHHHHHHHHcC---CcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        165 QHSNSNMVIMLIGNKSDLDA--RRE----VKKEEGEVFAREHG---LVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       165 ~~~~~~~piivv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      ... +++|+++|+||+|+..  .+.    +..+++..++..++   ++++++||++ .++.++|..+++.+
T Consensus       111 ~~~-~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          111 KYS-PDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             HHC-TTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred             HhC-CCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence            333 5799999999999975  343    55577888888887   6899999999 89999999888755

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.79  E-value=8.9e-20  Score=150.90  Aligned_cols=129  Identities=21%  Similarity=0.318  Sum_probs=94.9

Q ss_pred             CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCe
Q psy13390         94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNMV  172 (245)
Q Consensus        94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p  172 (245)
                      ..||++..+..    ++...+.+.||||+|++.+..++..+++.+|++|+|||++++.+++.+..|+..+..... .++|
T Consensus       193 ~~pT~~~~~~~----~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~p  268 (329)
T 3o47_A          193 TIPTIGFNVET----VEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAV  268 (329)
T ss_dssp             EEEETTEEEEE----EEETTEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCE
T ss_pred             cccccceEEEE----EecCcEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCe
Confidence            34677755432    333457899999999999999999999999999999999999999999888777655432 5799


Q ss_pred             EEEEEeCCCCccCcccCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        173 IMLIGNKSDLDARREVKKEEGEVFA-----REHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       173 iivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      ++||+||+|+....  ..++.....     ...+++++++||++|.||+++|+++.+.+.+
T Consensus       269 iilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          269 LLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             EEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             EEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            99999999997543  222222211     1234579999999999999999999988754

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.78  E-value=4.1e-19  Score=145.16  Aligned_cols=121  Identities=16%  Similarity=0.080  Sum_probs=98.2

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE-TFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~  170 (245)
                      ..+.||+|..+. ..+..++   .+.+|||  +++|+.+++.+++++|++|+|||++++. ++..+..|+..+..   .+
T Consensus        45 ~~~~pTiGd~~~-~~~~~~~---~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~---~~  115 (301)
T 1u0l_A           45 QNLKIYVGDRVE-YTPDETG---SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NE  115 (301)
T ss_dssp             TTCCCCTTCEEE-EECCCSS---SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TT
T ss_pred             cCCCCCCccEEE-EEEcCCC---eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CC
Confidence            568899995553 3322222   6899999  9999999999999999999999999987 78888999987754   36


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTA  223 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~  223 (245)
                      +|+++|+||+|+...+.+  ++...++..+.  ++++++||++|.|++++|..+.
T Consensus       116 ~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          116 LETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             CEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             CCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            899999999999654332  34566666666  8999999999999999998765

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.78  E-value=2.8e-18  Score=133.25  Aligned_cols=127  Identities=17%  Similarity=0.178  Sum_probs=87.2

Q ss_pred             CCcceeeEEEEEECCe-EEEEEEEcCCChhhhhh-hhHhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhh---cCCC
Q psy13390         97 GGGVEFGARMITIDGK-QIKLQIWDTAGQEAFRS-ITRSYYRGAAGALLVYDITRRE-TFNHLTTWLEDARQH---SNSN  170 (245)
Q Consensus        97 tig~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~---~~~~  170 (245)
                      +++.++..  +.+++. .+.+.+|||+|++++.. ++..+++++|++++|||+++.. ++.....|+..+...   ...+
T Consensus        38 ~~~~~~~~--~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (214)
T 2fh5_B           38 SITDSSAI--YKVNNNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNS  115 (214)
T ss_dssp             CCSCEEEE--EECSSTTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTC
T ss_pred             CcceeeEE--EEecCCCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccC
Confidence            44444433  555543 67899999999999988 8889999999999999999854 455555544443222   2357


Q ss_pred             CeEEEEEeCCCCccCcccCH--HHHHHHHH---------------------------------Hc--CCcEEEeccCCC-
Q psy13390        171 MVIMLIGNKSDLDARREVKK--EEGEVFAR---------------------------------EH--GLVFMETSAKLA-  212 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~--~~~~~~~~---------------------------------~~--~~~~~~~Sa~~~-  212 (245)
                      +|+++|+||+|+........  +.......                                 .+  ++++++|||++| 
T Consensus       116 ~piilv~nK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~  195 (214)
T 2fh5_B          116 PSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGR  195 (214)
T ss_dssp             CEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC---
T ss_pred             CCEEEEEECCCCCCcccHHHHHHHHHHHHHHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCC
Confidence            89999999999975432110  11111101                                 11  567999999999 


Q ss_pred             -----CCHHHHHHHHHHH
Q psy13390        213 -----TNVEEAFIDTAKE  225 (245)
Q Consensus       213 -----~~i~~~~~~i~~~  225 (245)
                           .||+++|+++.+.
T Consensus       196 ~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          196 GDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             ----CCBCHHHHHHHHHH
T ss_pred             ccccccChHHHHHHHHHh
Confidence                 9999999999875

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.78  E-value=1.6e-18  Score=129.32  Aligned_cols=122  Identities=19%  Similarity=0.155  Sum_probs=90.5

Q ss_pred             CCCcceeeEEEEEECCeEEEEEEEcCCChhhhh------hhhHhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhc
Q psy13390         96 SGGGVEFGARMITIDGKQIKLQIWDTAGQEAFR------SITRSYYR--GAAGALLVYDITRRETFNHLTTWLEDARQHS  167 (245)
Q Consensus        96 ~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~  167 (245)
                      |+++.+.....+.+++  ..+.+|||+|++.+.      .+...+++  ++|++++|+|+++..   ....|+..+..  
T Consensus        34 ~~~t~~~~~~~~~~~~--~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~---~~~~~~~~~~~--  106 (165)
T 2wji_A           34 PGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATALE---RNLYLTLQLME--  106 (165)
T ss_dssp             ---CCCCCEEEEEETT--EEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEEEEEEETTCHH---HHHHHHHHHHH--
T ss_pred             CCcceeeeEEEEEECC--cEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEEEEEecCCchh---HhHHHHHHHHh--
Confidence            4444455455555655  479999999998764      34566765  899999999998754   34456666654  


Q ss_pred             CCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        168 NSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       168 ~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                       .++|+++|+||+|+...+.+.. +...++..++++++++||++|.|++++|+++.+.+
T Consensus       107 -~~~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          107 -MGANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             -TTCCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             -cCCCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence             3589999999999865444432 35667777889999999999999999999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.76  E-value=1.3e-17  Score=131.03  Aligned_cols=116  Identities=18%  Similarity=0.113  Sum_probs=87.5

Q ss_pred             EEEEEEcCCCh------hh----hhhhhHhhccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCC
Q psy13390        114 IKLQIWDTAGQ------EA----FRSITRSYYRGAAGALLVYDITRRETFN--HLTTWLEDARQHSNSNMVIMLIGNKSD  181 (245)
Q Consensus       114 ~~~~l~Dt~G~------~~----~~~~~~~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piivv~nK~D  181 (245)
                      ..+.||||+|+      ++    +.. +..++..+|++++|||++++.+++  ....|+..+.... .++|+++|+||+|
T Consensus        76 ~~~~l~DtpG~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~-~~~piilv~nK~D  153 (228)
T 2qu8_A           76 NKYQIIDTPGLLDRAFENRNTIEMTT-ITALAHINGVILFIIDISEQCGLTIKEQINLFYSIKSVF-SNKSIVIGFNKID  153 (228)
T ss_dssp             EEEEEEECTTTTTSCGGGCCHHHHHH-HHHHHTSSEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC--CCCEEEEEECGG
T ss_pred             CeEEEEECCCCcCcccchhhhHHHHH-HHHhhccccEEEEEEecccccCcchHHHHHHHHHHHHhh-cCCcEEEEEeCcc
Confidence            67999999999      43    222 234678999999999999987764  2335666555442 4789999999999


Q ss_pred             CccCcccCHH---HHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390        182 LDARREVKKE---EGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEIYEKIQ  231 (245)
Q Consensus       182 l~~~~~~~~~---~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  231 (245)
                      +...+.+...   ....++...+  ++++++||++|.|++++|+++.+.+.+.+.
T Consensus       154 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~  208 (228)
T 2qu8_A          154 KCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQA  208 (228)
T ss_dssp             GCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             cCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHHH
Confidence            9766666554   4556666666  789999999999999999999999976653

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.75  E-value=9.4e-18  Score=126.26  Aligned_cols=129  Identities=20%  Similarity=0.177  Sum_probs=92.4

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV  172 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p  172 (245)
                      .+.|+++.++....+.+++.  .+.+|||+|++.+..++..+++.+|++++|||++++...+... ++..+.   ..++|
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~-~l~~~~---~~~~p  109 (178)
T 2lkc_A           36 QEAGGITQHIGAYQVTVNDK--KITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVE-AINHAK---AANVP  109 (178)
T ss_dssp             SSCCSSSTTCCCCEEEETTE--EEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTCCCCHHHHH-HHHHHG---GGSCC
T ss_pred             CCCCceeEeeeEEEEEeCCc--eEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHH-HHHHHH---hCCCC
Confidence            34566666666667777765  4789999999999999999999999999999998843322221 222222   24689


Q ss_pred             EEEEEeCCCCccCcccCHHHHHHHHHHc-------C--CcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        173 IMLIGNKSDLDARREVKKEEGEVFAREH-------G--LVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       173 iivv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      +++|+||+|+...   ..++........       +  ++++++||++|.|++++|+++.+.+...+
T Consensus       110 ~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          110 IIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             EEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred             EEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhhc
Confidence            9999999999643   222222222221       1  47999999999999999999998876543

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.73  E-value=1.5e-17  Score=127.06  Aligned_cols=128  Identities=16%  Similarity=0.200  Sum_probs=87.9

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCC----------hhhhhhhhHhhccCC---cEEEEEEeCCChhhHHHHHH
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAG----------QEAFRSITRSYYRGA---AGALLVYDITRRETFNHLTT  158 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~~~~~~~~~---d~vi~v~d~~~~~s~~~~~~  158 (245)
                      ..+.++.|.++......+++   .+.+|||+|          ++.+..++..+++.+   |++++|+|++++.++.+.. 
T Consensus        50 ~~~~~~~~~t~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-  125 (195)
T 1svi_A           50 ARTSSKPGKTQTLNFYIIND---ELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQ-  125 (195)
T ss_dssp             ----------CCEEEEEETT---TEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH-
T ss_pred             cccCCCCCceeeEEEEEECC---cEEEEECCCCCccccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHH-
Confidence            45667777777666666654   599999999          888888888888877   9999999999887776542 


Q ss_pred             HHHHHHhhcCCCCeEEEEEeCCCCccCcccCH--HHHHH-HHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKK--EEGEV-FAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       159 ~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~-~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      ++..+..   .+.|+++|+||+|+...+.+..  ++... ++...+++++++||++|.|++++|+++.+.+
T Consensus       126 ~~~~~~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  193 (195)
T 1svi_A          126 MYEFLKY---YGIPVIVIATKADKIPKGKWDKHAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             HHHHHHH---TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHH---cCCCEEEEEECcccCChHHHHHHHHHHHHHHcccCCCceEEEEccCCCCHHHHHHHHHHHh
Confidence            2222222   4689999999999976543322  22222 2223457899999999999999999998876

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.72  E-value=2.3e-18  Score=151.45  Aligned_cols=133  Identities=15%  Similarity=0.210  Sum_probs=102.1

Q ss_pred             CCCCCCCcceeeEEE------E--EECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHH
Q psy13390         92 SGSSSGGGVEFGARM------I--TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA  163 (245)
Q Consensus        92 ~~~~~tig~~~~~~~------~--~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~  163 (245)
                      ..+.||+|.++....      +  ..++..+.+.+|||+|++.+..++..+++.+|++++|||+++.   +....|+..+
T Consensus        68 ~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~V~D~s~~---~~~~~~~~~l  144 (535)
T 3dpu_A           68 PKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYMLLLDSRTD---SNKHYWLRHI  144 (535)
T ss_dssp             -------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEEEECGGGG---GGHHHHHHHH
T ss_pred             CCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEEEEeCCCc---hhHHHHHHHH
Confidence            567899998887552      1  2234467899999999999999999999999999999999765   5566788888


Q ss_pred             HhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       164 ~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      ..+. .+.|+++|+||+|+...+.+..++...++...+++++++||++|.|++++|+++.+.+.+
T Consensus       145 ~~~~-~~~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          145 EKYG-GKSPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             HHHS-SSCCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred             HHhC-CCCCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence            7776 578999999999998777778888888888889999999999999999999999988755

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.72  E-value=2.3e-17  Score=125.46  Aligned_cols=113  Identities=18%  Similarity=0.180  Sum_probs=86.1

Q ss_pred             EEEEEcCCC-----------hhhhhhhhHhhccC-CcEEEEEEeCCChhhHHHH-HHHHHH--------H-HhhcCCCCe
Q psy13390        115 KLQIWDTAG-----------QEAFRSITRSYYRG-AAGALLVYDITRRETFNHL-TTWLED--------A-RQHSNSNMV  172 (245)
Q Consensus       115 ~~~l~Dt~G-----------~~~~~~~~~~~~~~-~d~vi~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~p  172 (245)
                      .+.+|||+|           ++.+...+..+++. ++++++||++.+..++..+ ..|...        + ......++|
T Consensus        45 ~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p  124 (190)
T 2cxx_A           45 NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP  124 (190)
T ss_dssp             TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCC
T ss_pred             CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhhhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCc
Confidence            589999999           78888888888887 7766666666666777766 455542        2 222225799


Q ss_pred             EEEEEeCCCCccCcccCHHHHHHHHHHcCCc-------EEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        173 IMLIGNKSDLDARREVKKEEGEVFAREHGLV-------FMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       173 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-------~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      +++|+||+|+...+   .+....++..++++       ++++||++|.|++++|+++.+.+.+..
T Consensus       125 iilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~  186 (190)
T 2cxx_A          125 TIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRERQ  186 (190)
T ss_dssp             EEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC-
T ss_pred             eEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchhh
Confidence            99999999997543   55677777777764       799999999999999999999886644

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.71  E-value=5.5e-18  Score=127.36  Aligned_cols=120  Identities=19%  Similarity=0.198  Sum_probs=87.9

Q ss_pred             CcceeeEEEEEECCeEEEEEEEcCCChhhhhh------h--hHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q psy13390         98 GGVEFGARMITIDGKQIKLQIWDTAGQEAFRS------I--TRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS  169 (245)
Q Consensus        98 ig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~--~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~  169 (245)
                      .+.++....+.+++.  .+.+|||+|++.+..      +  ...+++.+|++++|||++++.+++. ..|+..+......
T Consensus        38 ~t~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~~i~v~D~~~~~s~~~-~~~~~~~~~~~~~  114 (172)
T 2gj8_A           38 TTRDVLREHIHIDGM--PLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDP-AEIWPEFIARLPA  114 (172)
T ss_dssp             CCCSCEEEEEEETTE--EEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSH-HHHCHHHHHHSCT
T ss_pred             ceeceeeEEEEECCe--EEEEEECCCcccchhHHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH-HHHHHHHHHhccc
Confidence            344555666777764  489999999864321      1  1246899999999999999888763 4677777666545


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ++|+++|+||+|+.....       .++...+.+++++||++|.|++++|+++.+.+.
T Consensus       115 ~~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          115 KLPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             TCCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred             CCCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence            799999999999853211       011224568999999999999999999988763

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.71  E-value=4e-17  Score=123.98  Aligned_cols=126  Identities=18%  Similarity=0.154  Sum_probs=96.3

Q ss_pred             CCCCcceeeEEEEEECCeEEEEEEEcCCChhhhh------hhhHhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy13390         95 SSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFR------SITRSYYR--GAAGALLVYDITRRETFNHLTTWLEDARQH  166 (245)
Q Consensus        95 ~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~  166 (245)
                      .|+++.+.....+.+++  ..+.+|||+|++.+.      .++..++.  .+|++++|+|.++   ++....|+..+.. 
T Consensus        37 ~~~~t~~~~~~~~~~~~--~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~---~~~~~~~~~~~~~-  110 (188)
T 2wjg_A           37 WPGVTVEKKEGEFEYNG--EKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLVVNIVDATA---LERNLYLTLQLME-  110 (188)
T ss_dssp             CTTSCCEEEEEEEEETT--EEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEEEEEEEGGG---HHHHHHHHHHHHT-
T ss_pred             CCCeeccceEEEEEeCC--cEEEEEECCCcCccccccHHHHHHHHHHhccCCCEEEEEecchh---HHHHHHHHHHHHh-
Confidence            34555555555566655  679999999998774      45666665  5999999999875   5566677776654 


Q ss_pred             cCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        167 SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       167 ~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                        .+.|+++|+||+|+...+.+. .....++...+++++++||++|.|++++|+++.+.+.+.
T Consensus       111 --~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          111 --MGANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDK  170 (188)
T ss_dssp             --TTCCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC
T ss_pred             --cCCCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence              458999999999986544444 346677778889999999999999999999999887543

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.71  E-value=8.3e-17  Score=131.93  Aligned_cols=130  Identities=15%  Similarity=0.045  Sum_probs=98.8

Q ss_pred             CCCCcceeeEEEEEECCe-EEEEEEEcCCChhhh----------hhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHH
Q psy13390         95 SSGGGVEFGARMITIDGK-QIKLQIWDTAGQEAF----------RSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA  163 (245)
Q Consensus        95 ~~tig~~~~~~~~~~~~~-~~~~~l~Dt~G~~~~----------~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~  163 (245)
                      .++.+++.......+... ...+.||||||+...          ...+..+++.+|++++|+|++++.++++...|+..+
T Consensus        39 s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~aD~il~VvD~~~~~~~~~~~~~~~~l  118 (308)
T 3iev_A           39 SPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEIYQNFI  118 (308)
T ss_dssp             CSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHHHT
T ss_pred             CCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcCCEEEEEEeCCCCCCchhHHHHHHHH
Confidence            344444444333333333 567999999998443          356678899999999999999988888877777776


Q ss_pred             HhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       164 ~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ...   ++|+++|+||+|+...+....+....+....+  .+++++||++|.|++++|+++.+.+.
T Consensus       119 ~~~---~~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          119 KPL---NKPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             GGG---CCCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             Hhc---CCCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence            653   58999999999997444455666777777765  77999999999999999999998774

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.70  E-value=7e-17  Score=119.38  Aligned_cols=116  Identities=15%  Similarity=0.096  Sum_probs=83.3

Q ss_pred             ceeeEEEEEECCeEEEEEEEcCCChhh-------hhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe
Q psy13390        100 VEFGARMITIDGKQIKLQIWDTAGQEA-------FRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV  172 (245)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~l~Dt~G~~~-------~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p  172 (245)
                      .+.....+.+++.  .+.+|||+|++.       +...+..+++.+|++++|+|++++.+...  .|+..+...  .+.|
T Consensus        37 ~~~~~~~~~~~~~--~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~--~~~~~~~~~--~~~p  110 (161)
T 2dyk_A           37 RDLKEGVVETDRG--RFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQAD--YEVAEYLRR--KGKP  110 (161)
T ss_dssp             -CCEEEEEEETTE--EEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCCCHHH--HHHHHHHHH--HTCC
T ss_pred             ecceEEEEEeCCc--eEEEEECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcccHhH--HHHHHHHHh--cCCC
Confidence            3444455555554  689999999987       45566778999999999999998644432  222222222  3589


Q ss_pred             EEEEEeCCCCccCcccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        173 IMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       173 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      +++|+||+|+....    ++...++ ..++ +++++||++|.|++++|+++.+.+
T Consensus       111 ~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          111 VILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             EEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             EEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence            99999999996542    2233444 5677 799999999999999999998764

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=99.69  E-value=3.5e-16  Score=119.21  Aligned_cols=129  Identities=15%  Similarity=0.160  Sum_probs=94.4

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCC----------hhhhhhhhHhhccCC---cEEEEEEeCCChhhHH--H
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAG----------QEAFRSITRSYYRGA---AGALLVYDITRRETFN--H  155 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G----------~~~~~~~~~~~~~~~---d~vi~v~d~~~~~s~~--~  155 (245)
                      ...+.++.|.++.......+.   .+.+|||+|          ++.+..++..+++.+   |++++|+|++++.+..  .
T Consensus        48 ~~~~~~~~~~t~~~~~~~~~~---~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~  124 (195)
T 3pqc_A           48 IAFVSKTPGKTRSINFYLVNS---KYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLM  124 (195)
T ss_dssp             CSCCCSSCCCCCCEEEEEETT---TEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHH
T ss_pred             cccccCCCCCccCeEEEEECC---cEEEEECCCCccccCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHH
Confidence            456677888777666555544   478999999          777888888888877   9999999998764433  3


Q ss_pred             HHHHHHHHHhhcCCCCeEEEEEeCCCCccCc--ccCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        156 LTTWLEDARQHSNSNMVIMLIGNKSDLDARR--EVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       156 ~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +..|+..      .++|+++|+||+|+....  ....++...++... .++++++||++|.|++++|+++.+.+.+
T Consensus       125 ~~~~~~~------~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          125 MVEWMKS------LNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             HHHHHHH------TTCCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             HHHHHHH------cCCCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            3334332      258999999999986432  23334555555553 4789999999999999999999988743

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.68  E-value=6.5e-17  Score=130.09  Aligned_cols=120  Identities=20%  Similarity=0.179  Sum_probs=92.1

Q ss_pred             cceeeEEEEEECCeEEEEEEEcCCChhhhh------hhhHhhcc--CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         99 GVEFGARMITIDGKQIKLQIWDTAGQEAFR------SITRSYYR--GAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        99 g~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~------~~~~~~~~--~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      |.++......+.. ...+.+|||||+..+.      .+++.|+.  .+|++++|+|+++.++   ...|...+..   .+
T Consensus        35 g~tv~~~~~~~~~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~vi~V~D~t~~e~---~~~~~~~l~~---~~  107 (272)
T 3b1v_A           35 GVTVERKSGLVKK-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSILNVVDATNLER---NLYLTTQLIE---TG  107 (272)
T ss_dssp             CCCCSCEEEECTT-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEEEEEEEGGGHHH---HHHHHHHHHH---TC
T ss_pred             CCcEEEEEEEEec-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEEEEEecCCchHh---HHHHHHHHHh---cC
Confidence            5555555555665 6679999999998775      45666776  6999999999987544   3445555544   35


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      +|+++|+||+|+...+.+. .+...++..++++++++||++|.|++++|+++.+.+
T Consensus       108 ~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~  162 (272)
T 3b1v_A          108 IPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHTT  162 (272)
T ss_dssp             SCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHSC
T ss_pred             CCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHHH
Confidence            8999999999986544444 345677788899999999999999999999998754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.67  E-value=1.2e-16  Score=127.73  Aligned_cols=122  Identities=18%  Similarity=0.146  Sum_probs=90.0

Q ss_pred             cceeeEEEEEECCeEEEEEEEcCCChhhhhh------hhHhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRS------ITRSYY--RGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        99 g~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      |.++......+......+.||||||+..+..      +.+.++  ..+|++++|+|+++..+.   ..|...+..   .+
T Consensus        37 g~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~ii~V~D~t~~~~~---~~~~~~l~~---~~  110 (258)
T 3a1s_A           37 GVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLVILVADSVNPEQS---LYLLLEILE---ME  110 (258)
T ss_dssp             TSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEEEEEEETTSCHHH---HHHHHHHHT---TT
T ss_pred             CceEEEEEEEEEECCeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEEEEEeCCCchhhH---HHHHHHHHh---cC
Confidence            3344444433433346899999999987754      335565  589999999999986543   335555544   35


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      +|+++|+||+|+...+.+.. +...++..++++++++||++|.|++++|+++.+.+.
T Consensus       111 ~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          111 KKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             CCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHhh
Confidence            89999999999865444442 366778888999999999999999999999988653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.66  E-value=3.4e-16  Score=122.16  Aligned_cols=134  Identities=16%  Similarity=0.083  Sum_probs=91.1

Q ss_pred             CCCCCCcceeeEEEEEEC-CeEEEEEEEcCCC----------hhhhhhhhHhhccC---CcEEEEEEeCCChhhHHHHHH
Q psy13390         93 GSSSGGGVEFGARMITID-GKQIKLQIWDTAG----------QEAFRSITRSYYRG---AAGALLVYDITRRETFNHLTT  158 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~-~~~~~~~l~Dt~G----------~~~~~~~~~~~~~~---~d~vi~v~d~~~~~s~~~~~~  158 (245)
                      ...++.|.+.......+. .....+.||||||          ++.+..+...+++.   +|++++|+|++++.+.. ...
T Consensus        57 ~~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~-~~~  135 (223)
T 4dhe_A           57 FASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTEL-DRR  135 (223)
T ss_dssp             CTTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHH-HHH
T ss_pred             eecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHH-HHH
Confidence            445566666666666665 4456799999999          46666777777776   78899999998764432 233


Q ss_pred             HHHHHHhhcCCCCeEEEEEeCCCCccCcccC--HHHHHH-HHHH------cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        159 WLEDARQHSNSNMVIMLIGNKSDLDARREVK--KEEGEV-FARE------HGLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       159 ~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~-~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      |+..+..   .++|+++|+||+|+.......  .+.... +...      .+.+++++||++|.|++++|+++.+.+...
T Consensus       136 ~~~~l~~---~~~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          136 MIEWFAP---TGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             HHHHHGG---GCCCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             HHHHHHh---cCCCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence            4444443   358999999999986533221  111222 2222      457799999999999999999999988654


Q ss_pred             H
Q psy13390        230 I  230 (245)
Q Consensus       230 ~  230 (245)
                      .
T Consensus       213 ~  213 (223)
T 4dhe_A          213 A  213 (223)
T ss_dssp             -
T ss_pred             C
Confidence            3

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.65  E-value=3e-16  Score=125.20  Aligned_cols=121  Identities=15%  Similarity=0.068  Sum_probs=88.7

Q ss_pred             CCCcceeeEEEEEECCeEEEEEEEcCCChhhhhh----------hhHhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHH
Q psy13390         96 SGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRS----------ITRSYY--RGAAGALLVYDITRRETFNHLTTWLEDA  163 (245)
Q Consensus        96 ~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~  163 (245)
                      |+++.+.....+.+++.  .+.+|||||...+..          +++.++  +++|++++|+|+++.++...+..+   +
T Consensus        32 pg~Tv~~~~~~~~~~~~--~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~vi~VvDas~~~~~~~l~~~---l  106 (256)
T 3iby_A           32 PGVTVEKKTGEFLLGEH--LIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLEYDCIINVIDACHLERHLYLTSQ---L  106 (256)
T ss_dssp             TTSSSEEEEEEEEETTE--EEEEEECCCCSSCC------CHHHHHHHHHHHHSCCSEEEEEEEGGGHHHHHHHHHH---H
T ss_pred             CCceEEEEEEEEEECCe--EEEEEeCCCcccccccccCCCHHHHHHHHHHhhCCCCEEEEEeeCCCchhHHHHHHH---H
Confidence            34444555555666664  799999999977653          556677  899999999999986554443332   3


Q ss_pred             HhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q psy13390        164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE  225 (245)
Q Consensus       164 ~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  225 (245)
                      ..   .++|+++|+||+|+...+.+.. ....+...++++++++||++|.|++++|+++.+.
T Consensus       107 ~~---~~~pvilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          107 FE---LGKPVVVALNMMDIAEHRGISI-DTEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             TT---SCSCEEEEEECHHHHHHTTCEE-CHHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             HH---cCCCEEEEEEChhcCCcCCcHH-HHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            22   3689999999999865443222 2344667789999999999999999999999775

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.63  E-value=2.5e-15  Score=132.63  Aligned_cols=127  Identities=23%  Similarity=0.292  Sum_probs=94.3

Q ss_pred             CCCcceeeEEEEEE-----CCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         96 SGGGVEFGARMITI-----DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        96 ~tig~~~~~~~~~~-----~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      .+.|.++......+     ++..+.++||||||+.+|...+..+++.+|++++|+|++++.+.+....|.....    .+
T Consensus        48 rerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~~~~~~----~~  123 (599)
T 3cb4_D           48 RERGITIKAQSVTLDYKASDGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANCYTAME----MD  123 (599)
T ss_dssp             ---------CEEEEEEECTTSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHHHHHHH----TT
T ss_pred             hcccceeeeeEEEEEEecCCCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHH----CC
Confidence            34455554443333     4567899999999999999999999999999999999999888787777765442    35


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCc---EEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLV---FMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +|+++|+||+|+...+  ..+....+...+++.   ++++||++|.|++++|+++.+.+..
T Consensus       124 ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp~  182 (599)
T 3cb4_D          124 LEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIPP  182 (599)
T ss_dssp             CEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSCC
T ss_pred             CCEEEeeeccCccccc--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCCC
Confidence            8999999999997543  233345566666664   8999999999999999999887743

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.63  E-value=1.7e-16  Score=136.88  Aligned_cols=123  Identities=17%  Similarity=0.104  Sum_probs=76.8

Q ss_pred             CcceeeEEEEEECCeEEEEEEEcCCChhhhhhhh--------HhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q psy13390         98 GGVEFGARMITIDGKQIKLQIWDTAGQEAFRSIT--------RSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS  169 (245)
Q Consensus        98 ig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~--------~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~  169 (245)
                      ++.++....+.+++  +.+.||||+|++.+...+        ..+++.+|++++|+|++++.+++.+..+...+...  .
T Consensus       267 tT~d~~~~~i~~~g--~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l--~  342 (476)
T 3gee_A          267 TTRDYIEECFIHDK--TMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADLILYLLDLGTERLDDELTEIRELKAAH--P  342 (476)
T ss_dssp             ------CEEEEETT--EEEEEEC--------------------CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHC--T
T ss_pred             ceEEEEEEEEEECC--eEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhc--C
Confidence            33444445556665  569999999998766543        33789999999999999988775433332222222  2


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ++|+++|+||+|+.......   ...+......+++++||++|.|++++|+++.+.+.
T Consensus       343 ~~piIvV~NK~Dl~~~~~~~---~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          343 AAKFLTVANKLDRAANADAL---IRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             TSEEEEEEECTTSCTTTHHH---HHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             CCCEEEEEECcCCCCccchh---HHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence            68999999999997554321   23343332468999999999999999999998875

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.62  E-value=7.8e-17  Score=125.42  Aligned_cols=103  Identities=17%  Similarity=0.228  Sum_probs=77.5

Q ss_pred             eEEEEEEEcCCChhhhhhhhHhhccC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhh----cCCCCeEEEEEeCCCC
Q psy13390        112 KQIKLQIWDTAGQEAFRSITRSYYRG----AAGALLVYDIT-RRETFNHLTTWLEDARQH----SNSNMVIMLIGNKSDL  182 (245)
Q Consensus       112 ~~~~~~l~Dt~G~~~~~~~~~~~~~~----~d~vi~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~piivv~nK~Dl  182 (245)
                      ....+.+|||+|++.++..+..+++.    +|++++|||++ ++.++.....|+..+...    ...++|+++|+||+|+
T Consensus        53 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  132 (218)
T 1nrj_B           53 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  132 (218)
T ss_dssp             GGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             eCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence            34569999999999999988888887    99999999999 888999888888887654    2357999999999999


Q ss_pred             ccCcccC------HHHHHHHHHHcCCcEEEeccCCCCC
Q psy13390        183 DARREVK------KEEGEVFAREHGLVFMETSAKLATN  214 (245)
Q Consensus       183 ~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~~~  214 (245)
                      ...+.+.      .+++..++...+++++++||++|.+
T Consensus       133 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          133 FTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             TTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             cccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            7655433      4556667777777899999998775

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.61  E-value=1.9e-15  Score=129.72  Aligned_cols=122  Identities=22%  Similarity=0.179  Sum_probs=84.2

Q ss_pred             CcceeeEEEEEECCeEEEEEEEcCCChhh---------hhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC
Q psy13390         98 GGVEFGARMITIDGKQIKLQIWDTAGQEA---------FRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN  168 (245)
Q Consensus        98 ig~~~~~~~~~~~~~~~~~~l~Dt~G~~~---------~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~  168 (245)
                      ++.++....+.+++.  .+.+|||||++.         +...+..++++||++++|+|++++.+..+  .++..+...  
T Consensus        35 ~T~d~~~~~~~~~~~--~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad~il~V~D~~~~~~~~d--~~i~~~l~~--  108 (439)
T 1mky_A           35 VTRDPVQDTVEWYGK--TFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED--ESLADFLRK--  108 (439)
T ss_dssp             ---CCSEEEEEETTE--EEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH--HHHHHHHHH--
T ss_pred             CccceeeEEEEECCe--EEEEEECCCccccccchHHHHHHHHHHHHHHhCCEEEEEEECCCCCCHHH--HHHHHHHHH--
Confidence            334444555666665  489999999764         34566789999999999999987655433  222222222  


Q ss_pred             CCCeEEEEEeCCCCccCcccCHHHH-HHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        169 SNMVIMLIGNKSDLDARREVKKEEG-EVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       169 ~~~piivv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      .++|+++|+||+|+....   ..+. ..+. .+++ +++++||++|.|++++|+++.+.+.+.
T Consensus       109 ~~~p~ilv~NK~D~~~~~---~~~~~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~  167 (439)
T 1mky_A          109 STVDTILVANKAENLREF---EREVKPELY-SLGFGEPIPVSAEHNINLDTMLETIIKKLEEK  167 (439)
T ss_dssp             HTCCEEEEEESCCSHHHH---HHHTHHHHG-GGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             cCCCEEEEEeCCCCcccc---HHHHHHHHH-hcCCCCEEEEeccCCCCHHHHHHHHHHhcccc
Confidence            258999999999985320   1222 3333 4566 689999999999999999999988653

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.60  E-value=7.1e-15  Score=129.59  Aligned_cols=113  Identities=24%  Similarity=0.297  Sum_probs=92.3

Q ss_pred             CCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccC
Q psy13390        110 DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVK  189 (245)
Q Consensus       110 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~  189 (245)
                      ++..+.++||||||+.+|...+..+++.+|++++|+|++++.+.+....|.....    .++|+++|+||+|+...+  .
T Consensus        69 dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~~~a~~----~~ipiIvviNKiDl~~a~--~  142 (600)
T 2ywe_A           69 DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANFWKAVE----QDLVIIPVINKIDLPSAD--V  142 (600)
T ss_dssp             TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHHHHHHH----TTCEEEEEEECTTSTTCC--H
T ss_pred             CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHHHHHHH----CCCCEEEEEeccCccccC--H
Confidence            4667899999999999999999999999999999999999888888777765432    368999999999996543  2


Q ss_pred             HHHHHHHHHHcCC---cEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        190 KEEGEVFAREHGL---VFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       190 ~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      .+....+....++   +++++||++|.|++++|+++.+.+..
T Consensus       143 ~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp~  184 (600)
T 2ywe_A          143 DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIPP  184 (600)
T ss_dssp             HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhccc
Confidence            2334555555666   48999999999999999999887753

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.60  E-value=5.2e-16  Score=131.76  Aligned_cols=120  Identities=12%  Similarity=0.098  Sum_probs=90.1

Q ss_pred             ceeeEEEEEECCeEEEEEEEcCCChhhhhhh-------hHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe
Q psy13390        100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSI-------TRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV  172 (245)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~-------~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p  172 (245)
                      .+.....+.+.+.. .+.||||+|++.+..+       +..+++.+|++++|+|++..   .....|+..+...   ++|
T Consensus        70 ~d~~~~~~~~~~~~-~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~---~~p  142 (423)
T 3qq5_A           70 TDPVYKSMELHPIG-PVTLVDTPGLDDVGELGRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEM---EIP  142 (423)
T ss_dssp             CCCCEEEEEETTTE-EEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHT---TCC
T ss_pred             eeeEEEEEEECCCC-eEEEEECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhc---CCC
Confidence            33444455555442 7999999999877654       35589999999999999433   2335566666554   589


Q ss_pred             EEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       173 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +++|+||+|+...+..  +....++..++++++++||++|.|++++|+++.+.+.+
T Consensus       143 iIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~~  196 (423)
T 3qq5_A          143 FVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILPG  196 (423)
T ss_dssp             EEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSCC
T ss_pred             EEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            9999999999765543  55566666678899999999999999999999988844

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.59  E-value=9.2e-16  Score=123.69  Aligned_cols=119  Identities=13%  Similarity=0.101  Sum_probs=84.2

Q ss_pred             cceeeEEEEEECCeEEEEEEEcCCChhhhhh----------hhHhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy13390         99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRS----------ITRSYY--RGAAGALLVYDITRRETFNHLTTWLEDARQH  166 (245)
Q Consensus        99 g~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~  166 (245)
                      +.+.....+...+  ..+.+|||||+..+..          .+..|+  +.+|++++|+|+++.++...   |...+...
T Consensus        37 t~~~~~~~~~~~~--~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~~~~~~---~~~~l~~~  111 (274)
T 3i8s_A           37 TVERKEGQFSTTD--HQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNLERNLY---LTLQLLEL  111 (274)
T ss_dssp             SSEEEEEEEECSS--CEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGHHHHHH---HHHHHHHH
T ss_pred             eEEEEEEEEEeCC--CceEEEECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCChHHHHH---HHHHHHhc
Confidence            3344444444444  4688999999877652          233343  79999999999998654433   33334333


Q ss_pred             cCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        167 SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       167 ~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                         ++|+++|+||+|+...+.+. .....++..++++++++||++|.|++++|+++.+.+
T Consensus       112 ---~~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          112 ---GIPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK  167 (274)
T ss_dssp             ---TCCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred             ---CCCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence               58999999999986443322 224556777899999999999999999999987765

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.59  E-value=3.1e-15  Score=122.08  Aligned_cols=109  Identities=17%  Similarity=0.088  Sum_probs=78.9

Q ss_pred             eEEEEEEEcCCChhh--------hhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHH-HHHHhhcCCCCeEEEEEeCCCC
Q psy13390        112 KQIKLQIWDTAGQEA--------FRSITRSYYRGAAGALLVYDITRRETFNHLTTWL-EDARQHSNSNMVIMLIGNKSDL  182 (245)
Q Consensus       112 ~~~~~~l~Dt~G~~~--------~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~piivv~nK~Dl  182 (245)
                      ...++.||||||+..        +......+++.+|++++|+|++++.+..+  .|+ ..+.... .++|+++|+||+|+
T Consensus        53 ~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~il~VvD~~~~~~~~~--~~i~~~l~~~~-~~~p~ilV~NK~Dl  129 (301)
T 1wf3_A           53 GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED--ELVARALKPLV-GKVPILLVGNKLDA  129 (301)
T ss_dssp             TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH--HHHHHHHGGGT-TTSCEEEEEECGGG
T ss_pred             CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCEEEEEEECCCCCChHH--HHHHHHHHhhc-CCCCEEEEEECccc
Confidence            346799999999865        45566778999999999999998755443  343 4444432 46899999999998


Q ss_pred             ccCcc-cCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        183 DARRE-VKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       183 ~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      ..... + .+....+  ....+++++||++|.|++++|+++.+.+
T Consensus       130 ~~~~~~~-~~~~~~~--~~~~~~~~iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          130 AKYPEEA-MKAYHEL--LPEAEPRMLSALDERQVAELKADLLALM  171 (301)
T ss_dssp             CSSHHHH-HHHHHHT--STTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCchHHH-HHHHHHh--cCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence            64332 1 1222222  1234689999999999999999998765

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.59  E-value=5.7e-15  Score=118.87  Aligned_cols=126  Identities=21%  Similarity=0.133  Sum_probs=92.7

Q ss_pred             CCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhh------hhHhhc--cCCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy13390         95 SSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRS------ITRSYY--RGAAGALLVYDITRRETFNHLTTWLEDARQH  166 (245)
Q Consensus        95 ~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~------~~~~~~--~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~  166 (245)
                      .|+++.+.....+.+.+.  .+.+|||||+..+..      .++.|+  .++|++++|+|+++..   ....|...+...
T Consensus        33 ~~~~t~~~~~~~~~~~~~--~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~~---~~~~~~~~~~~~  107 (271)
T 3k53_A           33 WPGVTVEKKEGIMEYREK--EFLVVDLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCLM---RNLFLTLELFEM  107 (271)
T ss_dssp             CTTSSCEEEEEEEEETTE--EEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGHH---HHHHHHHHHHHT
T ss_pred             CCCeEEEeeEEEEEECCc--eEEEEeCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcch---hhHHHHHHHHhc
Confidence            445556665556666664  499999999987765      566666  7899999999998753   333344444433


Q ss_pred             cCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        167 SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       167 ~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      .  ..|+++|+||+|+...+.+... ...+...++++++++||++|.|++++|+++.+.+..
T Consensus       108 ~--~~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~~~  166 (271)
T 3k53_A          108 E--VKNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVEELKRMIALMAEG  166 (271)
T ss_dssp             T--CCSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHHHT
T ss_pred             C--CCCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            2  3899999999998644333322 566777889999999999999999999999887643

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.59  E-value=7e-16  Score=132.31  Aligned_cols=127  Identities=14%  Similarity=0.040  Sum_probs=80.6

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChh--------hhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHH
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQE--------AFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA  163 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~--------~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~  163 (245)
                      ..+.++.|.+++.....+......+.+|||+|++        .+...+..+++.||+++||+|++++.+..+  .|+..+
T Consensus        29 ~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvD~~~~~~~~d--~~~~~~  106 (436)
T 2hjg_A           29 SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD--EEVAKI  106 (436)
T ss_dssp             C-----------CEEEECTTCSSCCEEEC---------CHHHHHHHHHHHHHHHCSEEEEEEETTTCSCHHH--HHHHHH
T ss_pred             eeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHH--HHHHHH
Confidence            3456778888777777776666789999999985        667778889999999999999998766554  333333


Q ss_pred             HhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       164 ~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ..  ..++|+++|+||+|+......    ...+. .+++ +++++||++|.|++++++++.+.+.
T Consensus       107 l~--~~~~pvilv~NK~D~~~~~~~----~~~~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          107 LY--RTKKPVVLAVNKLDNTEMRAN----IYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK  164 (436)
T ss_dssp             HT--TCCSCEEEEEECCCC-----C----CCSSG-GGSSCCCEECBTTTTBTHHHHHHHHHHTGG
T ss_pred             HH--HcCCCEEEEEECccCccchhh----HHHHH-HcCCCCeEEEeCcCCCChHHHHHHHHHhcC
Confidence            32  246899999999998643211    11122 3455 6899999999999999999988775

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.57  E-value=2.9e-14  Score=119.18  Aligned_cols=114  Identities=17%  Similarity=0.187  Sum_probs=88.5

Q ss_pred             EEEEEEEcCCChhhhh---------hhhHhhccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q psy13390        113 QIKLQIWDTAGQEAFR---------SITRSYYRGAAGALLVYDITRRE--TFNHLTTWLEDARQHSNSNMVIMLIGNKSD  181 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~---------~~~~~~~~~~d~vi~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piivv~nK~D  181 (245)
                      ...+.+|||+|.....         .....+...+|++++|+|++++.  +++....|+..+.... .+.|+++|+||+|
T Consensus       213 ~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~-~~~piilV~NK~D  291 (357)
T 2e87_A          213 YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEF-KDLPFLVVINKID  291 (357)
T ss_dssp             TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHT-TTSCEEEEECCTT
T ss_pred             CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhc-CCCCEEEEEECcc
Confidence            3569999999985431         11223456799999999998876  6787788888887655 2789999999999


Q ss_pred             CccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        182 LDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       182 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      +.....+  ++...++...+++++++||++|.|++++|+++.+.+...
T Consensus       292 l~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          292 VADEENI--KRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             TCCHHHH--HHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             cCChHHH--HHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            8654322  445556667788999999999999999999999988654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.56  E-value=4.6e-14  Score=121.80  Aligned_cols=123  Identities=22%  Similarity=0.141  Sum_probs=89.7

Q ss_pred             CCCcceeeEEEEEECCeEEEEEEEcCCChh-hhhh--------hhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy13390         96 SGGGVEFGARMITIDGKQIKLQIWDTAGQE-AFRS--------ITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH  166 (245)
Q Consensus        96 ~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~-~~~~--------~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~  166 (245)
                      |+...++....+.+++.  .+.||||+|++ .+..        ....+++.+|++|+|+|++++.++++.. +++.+   
T Consensus       275 ~gTT~d~~~~~i~~~g~--~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~s~~~~~-il~~l---  348 (482)
T 1xzp_A          275 PGTTRDVISEEIVIRGI--LFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRK-ILERI---  348 (482)
T ss_dssp             SCCSSCSCCEEEEETTE--EEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHH-HHHHH---
T ss_pred             CCeeeeeEEEEEecCCe--EEEEEECCCccccchhhHHHHHHHHHHHHhhcccEEEEEecCCCCCCHHHHH-HHHHh---
Confidence            33444555566667664  58999999998 5532        2346899999999999999887776543 23322   


Q ss_pred             cCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        167 SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       167 ~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                        .++|+++|+||+|+...  +..++...+.. .+++++++||++|.|++++|+++.+.+...
T Consensus       349 --~~~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~~  406 (482)
T 1xzp_A          349 --KNKRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQEI  406 (482)
T ss_dssp             --TTSSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHHH
T ss_pred             --cCCCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhhh
Confidence              36899999999999643  34444444432 446899999999999999999999987643

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.53  E-value=3.3e-14  Score=124.15  Aligned_cols=69  Identities=25%  Similarity=0.246  Sum_probs=57.1

Q ss_pred             eEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q psy13390        112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDA  184 (245)
Q Consensus       112 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  184 (245)
                      ..+.++||||||+.+|...+..+++.+|++|+|+|++++.+.+....|. .+..   .++|+++|+||+|+..
T Consensus        80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~-~~~~---~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           80 KDYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLME-VCRL---RHTPIMTFINKMDRDT  148 (528)
T ss_dssp             TTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHH-HHHT---TTCCEEEEEECTTSCC
T ss_pred             CCEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHH-HHHH---cCCCEEEEEeCCCCcc
Confidence            4567999999999999999999999999999999999887777655443 2332   4689999999999864

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.53  E-value=5e-14  Score=119.61  Aligned_cols=113  Identities=15%  Similarity=0.127  Sum_probs=86.9

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccC--H
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVK--K  190 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~  190 (245)
                      ...+.||||||+++|...+..++..+|++++|+|++++.++.....|+..+....  ..|+++|+||+|+.......  .
T Consensus        74 ~~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~--~~~iivviNK~Dl~~~~~~~~~~  151 (403)
T 3sjy_A           74 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQY  151 (403)
T ss_dssp             EEEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred             cceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcC--CCCEEEEEECccccchHHHHHHH
Confidence            4679999999999999999999999999999999998876777777776665543  25899999999986432111  1


Q ss_pred             HHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        191 EEGEVFAREH---GLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       191 ~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ++...+....   +++++++||++|.|++++|+++.+.+.
T Consensus       152 ~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l~  191 (403)
T 3sjy_A          152 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYIK  191 (403)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhCC
Confidence            2222222221   568999999999999999999987663

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.52  E-value=1.8e-14  Score=119.33  Aligned_cols=111  Identities=14%  Similarity=0.194  Sum_probs=87.9

Q ss_pred             EEEEEEcCCChhh----hhhhhHhhc---cCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCC
Q psy13390        114 IKLQIWDTAGQEA----FRSITRSYY---RGAAGALLVYDITR---RETFNHLTTWLEDARQHSN--SNMVIMLIGNKSD  181 (245)
Q Consensus       114 ~~~~l~Dt~G~~~----~~~~~~~~~---~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~D  181 (245)
                      ..+.||||+|...    +..+...|+   +.++++|+|+|+++   +.+++++..|+.++..+..  .++|+++|+||+|
T Consensus       206 ~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~D  285 (342)
T 1lnz_A          206 RSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMD  285 (342)
T ss_dssp             CEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTT
T ss_pred             ceEEEecCCCCcccccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECcc
Confidence            4699999999754    333445454   45999999999998   7889999999998887653  4799999999999


Q ss_pred             CccCcccCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        182 LDARREVKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       182 l~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +...+    +....+...+.  .+++++||+++.|++++|+++.+.+.+
T Consensus       286 l~~~~----e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~  330 (342)
T 1lnz_A          286 MPEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLEN  330 (342)
T ss_dssp             STTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             CCCCH----HHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHhh
Confidence            86432    34555666665  689999999999999999999988754

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.51  E-value=2.2e-13  Score=115.81  Aligned_cols=109  Identities=20%  Similarity=0.192  Sum_probs=75.5

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcc-
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR----ETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARRE-  187 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-  187 (245)
                      ...+.||||||++.|...+...+..+|++++|+|++++    .+++.+.    .+...  ...|+++++||+|+..... 
T Consensus        80 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~----~~~~l--~~~~iivv~NK~Dl~~~~~~  153 (408)
T 1s0u_A           80 LRRVSFVDSPGHETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLM----ALEIL--GIDKIIIVQNKIDLVDEKQA  153 (408)
T ss_dssp             EEEEEEEECSSHHHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHH----HHHHT--TCCCEEEEEECTTSSCTTTT
T ss_pred             ccEEEEEECCCHHHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHH----HHHHc--CCCeEEEEEEccCCCCHHHH
Confidence            36899999999999988777788899999999999964    3443332    22222  2358999999999965432 


Q ss_pred             -cCHHHHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        188 -VKKEEGEVFARE---HGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       188 -~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                       ...++...++..   .+++++++||++|.|++++++++.+.+.
T Consensus       154 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          154 EENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             TTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence             233455555543   3578999999999999999999987653

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.51  E-value=2.5e-14  Score=111.17  Aligned_cols=59  Identities=44%  Similarity=0.622  Sum_probs=54.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|++|||||+||.+.|+|+.+++..+|+.+++.|+||||++|.||+++|..+++.+...
T Consensus       119 ~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~F~~i~~~i~~~  177 (216)
T 4dkx_A          119 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAALPGM  177 (216)
T ss_dssp             SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHHC---
T ss_pred             CeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHHHHHHHHHHHhh
Confidence            58999999999999999999999999999999999999999999999999999988654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=99.50  E-value=4.1e-14  Score=115.51  Aligned_cols=97  Identities=20%  Similarity=0.119  Sum_probs=79.4

Q ss_pred             hhhhhhhhHhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccC-HHHHHHHHHHcC
Q psy13390        124 QEAFRSITRSYYRGAAGALLVYDITRRE-TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVK-KEEGEVFAREHG  201 (245)
Q Consensus       124 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~  201 (245)
                      +++++.+.+.+++++|++++|+|++++. +++.+..|+..+..   .++|+++|+||+|+.+...+. .++...++...+
T Consensus        66 ~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~---~~~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g  142 (302)
T 2yv5_A           66 EERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEY---FKVEPVIVFNKIDLLNEEEKKELERWISIYRDAG  142 (302)
T ss_dssp             CCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHh---CCCCEEEEEEcccCCCccccHHHHHHHHHHHHCC
Confidence            6788888888999999999999999986 88888899886654   468999999999986433222 344555666778


Q ss_pred             CcEEEeccCCCCCHHHHHHHHH
Q psy13390        202 LVFMETSAKLATNVEEAFIDTA  223 (245)
Q Consensus       202 ~~~~~~Sa~~~~~i~~~~~~i~  223 (245)
                      ++++++||++|.|++++|..+.
T Consensus       143 ~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          143 YDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CEEEECCTTTCTTHHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHhhcc
Confidence            9999999999999999998764

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.50  E-value=4.1e-14  Score=122.78  Aligned_cols=119  Identities=13%  Similarity=0.053  Sum_probs=78.4

Q ss_pred             CcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHH------HHHHHHHHHhhcCCCC
Q psy13390         98 GGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNH------LTTWLEDARQHSNSNM  171 (245)
Q Consensus        98 ig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~  171 (245)
                      .|.++......+......+.||||||+++|...+..+++.+|++|+|+|++++.++..      ....+. +.... ...
T Consensus        95 ~GiTi~~~~~~~~~~~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~-~~~~~-~~~  172 (483)
T 3p26_A           95 RGVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHML-LASSL-GIH  172 (483)
T ss_dssp             CCSSCCCCEEEEECSSCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHH-HHHHT-TCC
T ss_pred             cCcceEeeeEEEecCCceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHH-HHHHc-CCC
Confidence            3555555555565666789999999999999999999999999999999998754322      112122 22222 234


Q ss_pred             eEEEEEeCCCCccCcccCHH----HHHHHHHHc-----CCcEEEeccCCCCCHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKE----EGEVFAREH-----GLVFMETSAKLATNVEEA  218 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~----~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~  218 (245)
                      |+++|+||+|+.+.+....+    +...+....     +++++++||++|.|+.++
T Consensus       173 ~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          173 NLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             CEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             cEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            69999999999753322222    223333333     357999999999999853

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.50  E-value=6e-14  Score=120.21  Aligned_cols=118  Identities=20%  Similarity=0.185  Sum_probs=79.1

Q ss_pred             ceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhh---HH---HHHHHHHHHHhhcCCCCe-
Q psy13390        100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRET---FN---HLTTWLEDARQHSNSNMV-  172 (245)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~~---~~~~~~~~~~~~~~~~~p-  172 (245)
                      .++......+......+.||||||+++|...+..+++.+|++++|+|++++..   |+   .....+..+..   .++| 
T Consensus        81 iTid~~~~~~~~~~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~---~~v~~  157 (439)
T 3j2k_7           81 KTVEVGRAYFETEKKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKT---AGVKH  157 (439)
T ss_pred             ceEEEeEEEEecCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCCchHHHHHHHHHH---cCCCe
Confidence            33333334444445689999999999999988889999999999999998642   11   11222222222   3466 


Q ss_pred             EEEEEeCCCCccCc------ccCHHHHHHHHHHcC------CcEEEeccCCCCCHHHHHH
Q psy13390        173 IMLIGNKSDLDARR------EVKKEEGEVFAREHG------LVFMETSAKLATNVEEAFI  220 (245)
Q Consensus       173 iivv~nK~Dl~~~~------~~~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~~~  220 (245)
                      +++++||+|+....      ....++...+....+      ++++++||++|.|+.++++
T Consensus       158 iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          158 LIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             EEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            99999999985321      111233344444444      4699999999999999765

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.49  E-value=2.4e-13  Score=117.77  Aligned_cols=113  Identities=18%  Similarity=0.124  Sum_probs=84.4

Q ss_pred             EEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCCh---hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q psy13390        106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR---ETFNHLTTWLEDARQHSNSNMVIMLIGNKSDL  182 (245)
Q Consensus       106 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  182 (245)
                      .+.+++  ..+.||||||++.|...+..++..+|++++|+|++++   .+.+.+    ..+..   .++|+++|+||+|+
T Consensus        67 ~~~~~~--~~i~iiDtPGh~~~~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l----~~~~~---~~ip~IvviNK~Dl  137 (482)
T 1wb1_A           67 AFKLEN--YRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM----LILDH---FNIPIIVVITKSDN  137 (482)
T ss_dssp             EEEETT--EEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH----HHHHH---TTCCBCEEEECTTS
T ss_pred             EEEECC--EEEEEEECCChHHHHHHHHHHHhhCCEEEEEEecCCCccHHHHHHH----HHHHH---cCCCEEEEEECCCc
Confidence            344444  5799999999999988888899999999999999983   343332    22222   35888999999998


Q ss_pred             ccCcc--cCHHHHHHHHHHc----CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        183 DARRE--VKKEEGEVFAREH----GLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       183 ~~~~~--~~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      .....  ...++...+....    .++++++||++|.|++++++++.+.+.
T Consensus       138 ~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          138 AGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            64221  1223444555444    568999999999999999999998875

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.48  E-value=9.5e-14  Score=117.61  Aligned_cols=124  Identities=19%  Similarity=0.121  Sum_probs=86.8

Q ss_pred             cceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEE
Q psy13390         99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV-IMLIG  177 (245)
Q Consensus        99 g~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~  177 (245)
                      |.++......+......+.||||||+++|...+..+++.+|++|+|+|++++...+.... +..+..   .++| +++++
T Consensus        51 giTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~-l~~~~~---~~vp~iivvi  126 (397)
T 1d2e_A           51 GITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREH-LLLARQ---IGVEHVVVYV  126 (397)
T ss_dssp             TEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHH-HHHHHH---TTCCCEEEEE
T ss_pred             CcEEEeeeEEeccCCeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHH-HHHHHH---cCCCeEEEEE
Confidence            334433344455555679999999999998888889999999999999998654443333 233332   3578 78999


Q ss_pred             eCCCCccCcc---cCHHHHHHHHHHcC-----CcEEEeccCCCCC----------HHHHHHHHHHHH
Q psy13390        178 NKSDLDARRE---VKKEEGEVFAREHG-----LVFMETSAKLATN----------VEEAFIDTAKEI  226 (245)
Q Consensus       178 nK~Dl~~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~----------i~~~~~~i~~~i  226 (245)
                      ||+|+.....   ...++.+.++...+     ++++++||++|.|          +.++++.+.+.+
T Consensus       127 NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          127 NKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             ECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             ECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence            9999864221   12234555666655     5899999999775          778887776655

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.48  E-value=9.2e-14  Score=116.40  Aligned_cols=117  Identities=8%  Similarity=-0.049  Sum_probs=84.5

Q ss_pred             EEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEe-CCCCcc
Q psy13390        107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVI-MLIGN-KSDLDA  184 (245)
Q Consensus       107 ~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ivv~n-K~Dl~~  184 (245)
                      ..+......+.||||||+++|.......++.+|++++|+| ++. .+.....++..+...   ++|. ++++| |+|+ +
T Consensus        53 ~~~~~~~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g-~~~qt~e~~~~~~~~---~i~~~ivvvNNK~Dl-~  126 (370)
T 2elf_A           53 YNNDKEGRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQG-LDAHTGECIIALDLL---GFKHGIIALTRSDST-H  126 (370)
T ss_dssp             EEECSSSSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTC-CCHHHHHHHHHHHHT---TCCEEEEEECCGGGS-C
T ss_pred             EEEecCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCC-CcHHHHHHHHHHHHc---CCCeEEEEEEeccCC-C
Confidence            3455455579999999999998877788899999999999 543 334445555544433   4677 88899 9998 4


Q ss_pred             CcccCH--HHHHHHHHHc---CCcEEE--eccCC---CCCHHHHHHHHHHHHHHH
Q psy13390        185 RREVKK--EEGEVFAREH---GLVFME--TSAKL---ATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       185 ~~~~~~--~~~~~~~~~~---~~~~~~--~Sa~~---~~~i~~~~~~i~~~i~~~  229 (245)
                      .+.+..  ++...+....   .+++++  +||++   |.|++++++.+.+.+...
T Consensus       127 ~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~~  181 (370)
T 2elf_A          127 MHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEKI  181 (370)
T ss_dssp             HHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhcccc
Confidence            322211  3444444433   368999  99999   999999999999887654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.48  E-value=5.2e-14  Score=119.58  Aligned_cols=112  Identities=18%  Similarity=0.149  Sum_probs=79.9

Q ss_pred             cceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEE
Q psy13390         99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV-IMLIG  177 (245)
Q Consensus        99 g~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~  177 (245)
                      |.++......+......+.||||||+++|...+..+++.+|++|+|+|++++...+ ...|+..+...   ++| +++++
T Consensus        60 GiTi~~~~~~~~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~q-t~~~l~~~~~~---~ip~iivvi  135 (405)
T 2c78_A           60 GITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQ-TREHILLARQV---GVPYIVVFM  135 (405)
T ss_dssp             TCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHH-HHHHHHHHHHT---TCCCEEEEE
T ss_pred             CCCEEeeeeEeccCCeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHH-HHHHHHHHHHc---CCCEEEEEE
Confidence            33343444455555567999999999999888888999999999999999875443 34455544433   478 89999


Q ss_pred             eCCCCccCcc---cCHHHHHHHHHHcC-----CcEEEeccCCCCC
Q psy13390        178 NKSDLDARRE---VKKEEGEVFAREHG-----LVFMETSAKLATN  214 (245)
Q Consensus       178 nK~Dl~~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~  214 (245)
                      ||+|+.....   ...++...+....+     ++++++||++|.|
T Consensus       136 NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          136 NKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             ECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             ECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence            9999864221   11234555665555     6799999999987

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.48  E-value=3.3e-14  Score=107.84  Aligned_cols=105  Identities=9%  Similarity=-0.010  Sum_probs=69.3

Q ss_pred             cCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHH---HHhhc--CCCCeEEEEEeCC-CCccCcccCHHHH
Q psy13390        120 DTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED---ARQHS--NSNMVIMLIGNKS-DLDARREVKKEEG  193 (245)
Q Consensus       120 Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~---~~~~~--~~~~piivv~nK~-Dl~~~~~~~~~~~  193 (245)
                      |.+|++.++.+|+.||+++|++|||+|++|.+.++ ....+.+   +....  ..++|++|++||. |++.  ..+..+.
T Consensus       108 ~~GGQ~klRplWr~Yy~~TdglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI  184 (227)
T 3l82_B          108 QQGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYL  184 (227)
T ss_dssp             ---------CCHHHHHHHCSEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHH
T ss_pred             ccCcHHHHHHHHHHHhcCCCEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHH
Confidence            35699999999999999999999999999876544 4444422   22222  1579999999995 7753  3344443


Q ss_pred             HHHHH----HcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        194 EVFAR----EHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       194 ~~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      .....    .+.+.+..|||++|+|+.+.++|+.+.+.
T Consensus       185 ~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          185 AHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             HHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             HHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            33211    24566899999999999999999987763

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.48  E-value=2.2e-14  Score=123.74  Aligned_cols=127  Identities=14%  Similarity=0.041  Sum_probs=81.8

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCC--------hhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHH
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAG--------QEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA  163 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G--------~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~  163 (245)
                      ..+.++.|.++......+......+.+|||+|        ++.+...+..+++.+|++|||+|..++.+..  ..|+..+
T Consensus        49 ~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~--d~~l~~~  126 (456)
T 4dcu_A           49 SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA--DEEVAKI  126 (456)
T ss_dssp             C-----------CEEEECTTCSSCCEEECCCC------CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH--HHHHHHH
T ss_pred             cccCCCCCcceeEEEEEEEECCceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH--HHHHHHH
Confidence            34566778888888877777777899999999        7788888899999999999999988754333  2333333


Q ss_pred             HhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        164 RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       164 ~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ...  .++|+++|+||+|+....    .....+. ..++ +.+++||++|.|+.++++.+.+.+.
T Consensus       127 l~~--~~~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          127 LYR--TKKPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             HTT--CCSCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred             HHH--cCCCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccchHHHHHHHHhhcc
Confidence            332  468999999999985322    1111111 2333 4789999999999999999988764

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.47  E-value=8.2e-14  Score=119.74  Aligned_cols=122  Identities=17%  Similarity=0.127  Sum_probs=80.1

Q ss_pred             CCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhH--------hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh
Q psy13390         95 SSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITR--------SYYRGAAGALLVYDITRRETFNHLTTWLEDARQH  166 (245)
Q Consensus        95 ~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~--------~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~  166 (245)
                      .|+.+.++....+.+++.  .+.||||+|.+.+...++        .+++.+|++++|+|++++.+... ..|+..+   
T Consensus       255 ~~gtT~d~~~~~i~~~g~--~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~vl~VvD~s~~~~~~~-~~i~~~l---  328 (462)
T 3geh_A          255 LPGTTRDVVESQLVVGGI--PVQVLDTAGIRETSDQVEKIGVERSRQAANTADLVLLTIDAATGWTTGD-QEIYEQV---  328 (462)
T ss_dssp             CTTCCHHHHHHEEEETTE--EEEECC--------------------CCCCSCSEEEEEEETTTCSCHHH-HHHHHHH---
T ss_pred             CCCeeEEEEEEEEEECCE--EEEEEECCccccchhHHHHHHHHHHhhhhhcCCEEEEEeccCCCCCHHH-HHHHHhc---
Confidence            455556666666777774  589999999876654332        36889999999999998776654 3444443   


Q ss_pred             cCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        167 SNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       167 ~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                        ...|+++|+||+|+.......  ....+.  ...+++++||++|.|++++|+++.+.+..
T Consensus       329 --~~~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          329 --KHRPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIVQT  384 (462)
T ss_dssp             --TTSCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHHTT
T ss_pred             --cCCcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence              236999999999997544332  111111  35679999999999999999999988754

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.47  E-value=1.5e-14  Score=123.98  Aligned_cols=110  Identities=19%  Similarity=0.220  Sum_probs=78.5

Q ss_pred             CCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc----CCCC-eEEEEEeCCCCcc
Q psy13390        110 DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS----NSNM-VIMLIGNKSDLDA  184 (245)
Q Consensus       110 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~----~~~~-piivv~nK~Dl~~  184 (245)
                      +.....+.||||||+++|...+..+++.+|++|+|+|+++ .+|+....|......+.    ..++ |+++++||+|+..
T Consensus        80 ~~~~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~  158 (435)
T 1jny_A           80 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMDLTE  158 (435)
T ss_dssp             ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred             ecCCeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence            3344579999999999999989899999999999999998 66765433222221111    1234 6899999999865


Q ss_pred             Cc------ccCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHH
Q psy13390        185 RR------EVKKEEGEVFAREHG-----LVFMETSAKLATNVEEAFI  220 (245)
Q Consensus       185 ~~------~~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  220 (245)
                      ..      ....++...++...+     ++++++||++|.|+.+++.
T Consensus       159 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          159 PPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             STTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             ccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            21      112345566666665     6799999999999986654

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.46  E-value=6.7e-13  Score=112.91  Aligned_cols=109  Identities=18%  Similarity=0.164  Sum_probs=79.6

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCCh----hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcc-
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR----ETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARRE-  187 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-  187 (245)
                      ...+.||||||++.|.......+..+|++++|+|++++    .+.+.+..    +....  ..|+++|+||+|+..... 
T Consensus        82 ~~~i~iiDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~--~~~iivviNK~Dl~~~~~~  155 (410)
T 1kk1_A           82 VRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMA----LQIIG--QKNIIIAQNKIELVDKEKA  155 (410)
T ss_dssp             EEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHH----HHHHT--CCCEEEEEECGGGSCHHHH
T ss_pred             ccEEEEEECCChHHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHH----HHHcC--CCcEEEEEECccCCCHHHH
Confidence            36799999999999988777788899999999999964    33333322    22222  258999999999864321 


Q ss_pred             -cCHHHHHHHHHH---cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        188 -VKKEEGEVFARE---HGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       188 -~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                       ...++...+...   .+++++++||++|.|++++++++.+.+.
T Consensus       156 ~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          156 LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence             122334444433   3578999999999999999999987654

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.45  E-value=1.4e-13  Score=117.88  Aligned_cols=109  Identities=21%  Similarity=0.105  Sum_probs=78.6

Q ss_pred             ECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcc-
Q psy13390        109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARRE-  187 (245)
Q Consensus       109 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~-  187 (245)
                      +......+.||||||+++|...+..+++.+|++++|+|++++...+ ...++..+....  -.|+++|+||+|+..... 
T Consensus        99 ~~~~~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~q-t~~~l~~~~~~~--~~~iIvviNK~Dl~~~~~~  175 (434)
T 1zun_B           99 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQ-TRRHSYIASLLG--IKHIVVAINKMDLNGFDER  175 (434)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHH-HHHHHHHHHHTT--CCEEEEEEECTTTTTSCHH
T ss_pred             eecCCceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHH-HHHHHHHHHHcC--CCeEEEEEEcCcCCcccHH
Confidence            3444567999999999999888888999999999999999865433 233444333322  236999999999964211 


Q ss_pred             -c--CHHHHHHHHHHcC-----CcEEEeccCCCCCHHHHHH
Q psy13390        188 -V--KKEEGEVFAREHG-----LVFMETSAKLATNVEEAFI  220 (245)
Q Consensus       188 -~--~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~~~  220 (245)
                       +  ..++...++...+     ++++++||++|.|++++|.
T Consensus       176 ~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~  216 (434)
T 1zun_B          176 VFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSE  216 (434)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCT
T ss_pred             HHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccccc
Confidence             1  2244555666666     6799999999999998543

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.44  E-value=1.4e-14  Score=125.05  Aligned_cols=107  Identities=19%  Similarity=0.203  Sum_probs=65.4

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChh---hHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCccCc--
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE---TFNHLTTWLEDARQHSNSNMV-IMLIGNKSDLDARR--  186 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~~~~--  186 (245)
                      ...+.||||||+++|...+..+++.+|++|+|+|++++.   +|+...+|...+......++| +++++||+|+....  
T Consensus       120 ~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~  199 (467)
T 1r5b_A          120 HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWS  199 (467)
T ss_dssp             SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTSTTCSSC
T ss_pred             CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccCCCcccc
Confidence            457999999999999888888999999999999999863   333222233322222224577 99999999985321  


Q ss_pred             ----ccCHHHHHHHHHHc-------CCcEEEeccCCCCCHHHHH
Q psy13390        187 ----EVKKEEGEVFAREH-------GLVFMETSAKLATNVEEAF  219 (245)
Q Consensus       187 ----~~~~~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~  219 (245)
                          ....++...++...       .++++++||++|.|+.++|
T Consensus       200 ~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          200 EERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence                11123455555554       3569999999999998866

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.44  E-value=5.7e-15  Score=128.61  Aligned_cols=108  Identities=19%  Similarity=0.151  Sum_probs=79.2

Q ss_pred             EEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCccc-CHHHH
Q psy13390        115 KLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREV-KKEEG  193 (245)
Q Consensus       115 ~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~-~~~~~  193 (245)
                      .+.||||||++.|..++..+++.+|++++|+|++++...+....| ..+.   ..++|+++++||+|+...+.. ...+.
T Consensus        53 ~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~dg~~~qt~e~l-~~~~---~~~vPiIVViNKiDl~~~~~~~v~~~l  128 (537)
T 3izy_P           53 KITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESI-QHAK---DAHVPIVLAINKCDKAEADPEKVKKEL  128 (537)
T ss_dssp             CCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSSCCCHHHHHHH-HHHH---TTTCCEEECCBSGGGTTTSCCSSSSHH
T ss_pred             EEEEEECCChHHHHHHHHHHHccCCEEEEEEECCCCccHHHHHHH-HHHH---HcCCcEEEEEecccccccchHHHHHHH
Confidence            489999999999999999999999999999999987665554332 2222   346899999999998643211 11111


Q ss_pred             HHH---HHHc--CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        194 EVF---AREH--GLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       194 ~~~---~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      ..+   +..+  .++++++||++|.|++++|+++...+
T Consensus       129 ~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~  166 (537)
T 3izy_P          129 LAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA  166 (537)
T ss_dssp             HHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred             HhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence            111   1111  24799999999999999999998765

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.43  E-value=1.8e-13  Score=126.92  Aligned_cols=128  Identities=17%  Similarity=0.100  Sum_probs=87.5

Q ss_pred             CCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-E
Q psy13390         95 SSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV-I  173 (245)
Q Consensus        95 ~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-i  173 (245)
                      +.+.|.++....+.++.....+.||||||+++|......+++.+|++|+|+|++++...+. ..++..+...   ++| +
T Consensus       340 ErerGITIdva~v~f~~~~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QT-rEhL~ll~~l---gIP~I  415 (1289)
T 3avx_A          340 EKARGITINTSHVEYDTPTRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQT-REHILLGRQV---GVPYI  415 (1289)
T ss_dssp             --------CCSCEEEECSSCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTH-HHHHHHHHHH---TCSCE
T ss_pred             cccCceeEEEEEEEEcCCCEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHH-HHHHHHHHHc---CCCeE
Confidence            4566777665556666666789999999999998888889999999999999998654333 3344444433   478 8


Q ss_pred             EEEEeCCCCccCcc---cCHHHHHHHHHHcC-----CcEEEeccCCC--------CCHHHHHHHHHHHH
Q psy13390        174 MLIGNKSDLDARRE---VKKEEGEVFAREHG-----LVFMETSAKLA--------TNVEEAFIDTAKEI  226 (245)
Q Consensus       174 ivv~nK~Dl~~~~~---~~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~~i~~~~~~i~~~i  226 (245)
                      |+++||+|+.....   ...++...+....+     ++++++||++|        .|+.++|+.+.+.+
T Consensus       416 IVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          416 IVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             EEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             EEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence            89999999964221   12244555666655     67999999999        45777777776644

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.42  E-value=3e-13  Score=110.39  Aligned_cols=109  Identities=17%  Similarity=0.088  Sum_probs=77.1

Q ss_pred             EEEEEEEcCCChh-h--------hhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390        113 QIKLQIWDTAGQE-A--------FRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD  183 (245)
Q Consensus       113 ~~~~~l~Dt~G~~-~--------~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  183 (245)
                      ...+.+|||||+. .        +......+++.+|++++|+|+++ .+  ....|+.....  ..+.|+++++||+|+.
T Consensus        55 ~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D~vl~Vvd~~~-~~--~~~~~i~~~l~--~~~~P~ilvlNK~D~~  129 (301)
T 1ega_A           55 AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTR-WT--PDDEMVLNKLR--EGKAPVILAVNKVDNV  129 (301)
T ss_dssp             TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTC-CC--HHHHHHHHHHH--SSSSCEEEEEESTTTC
T ss_pred             CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCCEEEEEEeCCC-CC--HHHHHHHHHHH--hcCCCEEEEEECcccC
Confidence            3579999999987 2        22334567889999999999976 33  22334333222  2468999999999986


Q ss_pred             cCcccCHHHHHHHHHHcCC-cEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        184 ARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      ..+....+....+...+++ +++.+||++|.|++++++.+.+.+
T Consensus       130 ~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          130 QEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             CCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence            5222223444555555666 599999999999999999988765

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.42  E-value=1.9e-12  Score=114.33  Aligned_cols=109  Identities=23%  Similarity=0.169  Sum_probs=79.2

Q ss_pred             EEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCccc---
Q psy13390        115 KLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITR---RETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREV---  188 (245)
Q Consensus       115 ~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~---  188 (245)
                      .++||||||++.|..++..+++.+|++|+|+|+++   +.+++.+..    +..   .++|+++++||+|+......   
T Consensus        71 ~i~liDTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv~~qT~e~l~~----l~~---~~vPiIVViNKiDl~~~~~~~~~  143 (594)
T 1g7s_A           71 GLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNI----LRM---YRTPFVVAANKIDRIHGWRVHEG  143 (594)
T ss_dssp             EEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHHHHHHH----HHH---TTCCEEEEEECGGGSTTCCCCTT
T ss_pred             CEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHhHHHHHHH----HHH---cCCeEEEEecccccccccccccC
Confidence            48999999999999999999999999999999998   555554332    222   46899999999998532110   


Q ss_pred             ----------CHH----------HHHHHHHHcC---------------CcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        189 ----------KKE----------EGEVFAREHG---------------LVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       189 ----------~~~----------~~~~~~~~~~---------------~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                                ..+          +........+               ++++.+||++|.|++++++++...+....
T Consensus       144 ~~~~e~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~~  220 (594)
T 1g7s_A          144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (594)
T ss_dssp             CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             CchHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhccccc
Confidence                      000          0111111122               37999999999999999999998876443

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.41  E-value=4.8e-12  Score=105.71  Aligned_cols=126  Identities=23%  Similarity=0.092  Sum_probs=86.6

Q ss_pred             eeEEEEEECCeEEEEEEEcCCCh---------hhhhhhhHhhccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCC
Q psy13390        102 FGARMITIDGKQIKLQIWDTAGQ---------EAFRSITRSYYRGAAGALLVYDITRRE--TFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus       102 ~~~~~~~~~~~~~~~~l~Dt~G~---------~~~~~~~~~~~~~~d~vi~v~d~~~~~--s~~~~~~~~~~~~~~~~~~  170 (245)
                      .....+.+++  ..+.+|||+|.         +.+...+. .+..+|++++|+|++++.  ..+....|...+......+
T Consensus       216 ~~~~~i~~~g--~~v~l~DT~G~i~~lp~~lve~f~~tl~-~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~  292 (364)
T 2qtf_A          216 PKRYAIPINN--RKIMLVDTVGFIRGIPPQIVDAFFVTLS-EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSG  292 (364)
T ss_dssp             SCEEEEEETT--EEEEEEECCCBCSSCCGGGHHHHHHHHH-GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS
T ss_pred             CEEEEEEECC--EEEEEEeCCCchhcCCHHHHHHHHHHHH-HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCC
Confidence            3345566666  45899999996         22333333 688999999999999876  5555555655555544356


Q ss_pred             CeEEEEEeCCCCccCccc-CHHHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREV-KKEEGEVFAREH---GLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~-~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      .|+++|+||+|+...... ..+.+..++...   ..+++++||++|.|++++++++.+.+....
T Consensus       293 ~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~~  356 (364)
T 2qtf_A          293 KPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQLS  356 (364)
T ss_dssp             CCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhcccC
Confidence            899999999998643210 011222233443   236899999999999999999998776544

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.40  E-value=3.3e-14  Score=118.87  Aligned_cols=130  Identities=15%  Similarity=0.226  Sum_probs=70.8

Q ss_pred             CCCCcceeeEEEEEECCeEEEEEEEcCCCh-------hhhhhhhH-------hhccCC-------------cEEEEEEeC
Q psy13390         95 SSGGGVEFGARMITIDGKQIKLQIWDTAGQ-------EAFRSITR-------SYYRGA-------------AGALLVYDI  147 (245)
Q Consensus        95 ~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~-------~~~~~~~~-------~~~~~~-------------d~vi~v~d~  147 (245)
                      .+|++.++....+...+..+.+.+|||+|.       +.+..++.       .|++.+             |+++++++.
T Consensus        76 ~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~  155 (361)
T 2qag_A           76 ERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISP  155 (361)
T ss_dssp             --CEEEEEEEEC----CEEEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECS
T ss_pred             CCceeEEEEEEEeecCCcccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEec
Confidence            467766665555555677789999999999       66666665       566543             345555553


Q ss_pred             CChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccCcccCH--HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q psy13390        148 TRRETFNHLT-TWLEDARQHSNSNMVIMLIGNKSDLDARREVKK--EEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK  224 (245)
Q Consensus       148 ~~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  224 (245)
                      + ..++..+. .|+..+    ..++|+|+|+||+|+...+++..  +++..++..++++++++||++|.+ ++.|.++.+
T Consensus       156 ~-~~~l~~~d~~~~~~l----~~~~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~  229 (361)
T 2qag_A          156 F-GHGLKPLDVAFMKAI----HNKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTR  229 (361)
T ss_dssp             S-SSSCCHHHHHHHHHT----CS-SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHH
T ss_pred             C-CCCcchhHHHHHHHh----ccCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHH
Confidence            2 33444443 333333    25789999999999976554433  456666667789999999999999 999999998


Q ss_pred             HHHHHH
Q psy13390        225 EIYEKI  230 (245)
Q Consensus       225 ~i~~~~  230 (245)
                      .+.+..
T Consensus       230 ~i~~~i  235 (361)
T 2qag_A          230 LLKASI  235 (361)
T ss_dssp             HHHHTC
T ss_pred             HHHhcC
Confidence            886643

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.39  E-value=1.6e-13  Score=118.26  Aligned_cols=107  Identities=19%  Similarity=0.135  Sum_probs=74.9

Q ss_pred             ECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChh---hHH---HHHHHHHHHHhhcCCCCe-EEEEEeCCC
Q psy13390        109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE---TFN---HLTTWLEDARQHSNSNMV-IMLIGNKSD  181 (245)
Q Consensus       109 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~p-iivv~nK~D  181 (245)
                      +......+.||||||+++|...+..+++.+|++|+|+|++++.   +|+   ....++..+..   .++| +++|+||+|
T Consensus        80 ~~~~~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~---~~v~~iivviNK~D  156 (458)
T 1f60_A           80 FETPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT---LGVRQLIVAVNKMD  156 (458)
T ss_dssp             EECSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH---TTCCEEEEEEECGG
T ss_pred             EecCCceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHH---cCCCeEEEEEEccc
Confidence            3344467999999999999998889999999999999999763   231   22222222222   2465 999999999


Q ss_pred             CccCcc----cCHHHHHHHHHHcC-----CcEEEeccCCCCCHHHH
Q psy13390        182 LDARRE----VKKEEGEVFAREHG-----LVFMETSAKLATNVEEA  218 (245)
Q Consensus       182 l~~~~~----~~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~  218 (245)
                      +.+...    ...++...++...+     ++++++||++|.|+.++
T Consensus       157 l~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          157 SVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             GGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             cccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            863111    12234455555555     67999999999999754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.36  E-value=4.7e-13  Score=107.83  Aligned_cols=129  Identities=16%  Similarity=0.134  Sum_probs=72.4

Q ss_pred             CCCCCcceeeEEEEEECCeEEEEEEEcCCChh-------hhhhhh-------Hhhcc-------------CCcEEEEEEe
Q psy13390         94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQE-------AFRSIT-------RSYYR-------------GAAGALLVYD  146 (245)
Q Consensus        94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~-------~~~~~~-------~~~~~-------------~~d~vi~v~d  146 (245)
                      ..+|++.++....+..++..+.+.+|||||..       .+..+.       ..|+.             .+|+++++++
T Consensus        45 ~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~  124 (274)
T 3t5d_A           45 IKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIA  124 (274)
T ss_dssp             ----CCCEEEEEEECC--CCEEEEEEECCCCSCCSCCTTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEEC
T ss_pred             cCCceEEEEEEEEEecCCeEEEEEEEECCCccccccchhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEec
Confidence            36788888777776667777899999999972       233332       33333             3789999998


Q ss_pred             CCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccC--HHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHH
Q psy13390        147 ITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVK--KEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK  224 (245)
Q Consensus       147 ~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~  224 (245)
                      .+..........++..+..    ++|+++|+||+|+....+..  .+.........+++++.+||+++.|++++++++.+
T Consensus       125 ~~~~~~~~~d~~~l~~l~~----~~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~  200 (274)
T 3t5d_A          125 PSGHGLKPLDIEFMKRLHE----KVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKD  200 (274)
T ss_dssp             SCCSSCCHHHHHHHHHHTT----TSCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHH
T ss_pred             CCCCCCCHHHHHHHHHHhc----cCCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhc
Confidence            7653211222234444432    68999999999985432221  12334445567889999999999999999988876


Q ss_pred             HH
Q psy13390        225 EI  226 (245)
Q Consensus       225 ~i  226 (245)
                      .+
T Consensus       201 ~~  202 (274)
T 3t5d_A          201 RL  202 (274)
T ss_dssp             TC
T ss_pred             CC
Confidence            54

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.36  E-value=1.8e-13  Score=121.51  Aligned_cols=120  Identities=17%  Similarity=0.108  Sum_probs=78.5

Q ss_pred             cceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhh---HHHHHHHHHHHHhhcCCC-CeEE
Q psy13390         99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRET---FNHLTTWLEDARQHSNSN-MVIM  174 (245)
Q Consensus        99 g~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s---~~~~~~~~~~~~~~~~~~-~pii  174 (245)
                      |.++......+......+.||||||+++|...+..+++.+|++|+|+|++++..   +....++...+......+ .|++
T Consensus       230 GiTid~~~~~~~~~~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iI  309 (611)
T 3izq_1          230 GVTVSICTSHFSTHRANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLI  309 (611)
T ss_dssp             TTCCSCSCCEEECSSCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEE
T ss_pred             CeeEeeeeEEEecCCceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEE
Confidence            445544444455556689999999999999988899999999999999987521   100111111111111123 4599


Q ss_pred             EEEeCCCCccCcccC----HHHHHHHHHHcC-----CcEEEeccCCCCCHHHH
Q psy13390        175 LIGNKSDLDARREVK----KEEGEVFAREHG-----LVFMETSAKLATNVEEA  218 (245)
Q Consensus       175 vv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~  218 (245)
                      +|+||+|+...+...    .++...+....+     ++++++||++|.|+.++
T Consensus       310 VVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          310 IAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             EEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             EEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            999999986522211    223333444333     57999999999999876

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=99.36  E-value=4.9e-13  Score=106.24  Aligned_cols=104  Identities=8%  Similarity=-0.021  Sum_probs=73.9

Q ss_pred             CCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHH---HHHhhc--CCCCeEEEEEeC-CCCccCcccCHHHHH
Q psy13390        121 TAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE---DARQHS--NSNMVIMLIGNK-SDLDARREVKKEEGE  194 (245)
Q Consensus       121 t~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~---~~~~~~--~~~~piivv~nK-~Dl~~~~~~~~~~~~  194 (245)
                      .+||+.++.+|+.||+++|++|||+|++|.+.++ ....+.   .+....  ..++|++|++|| .|++.  ..+..+..
T Consensus       194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~--Ams~~EI~  270 (312)
T 3l2o_B          194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLA  270 (312)
T ss_dssp             ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC--BCCHHHHH
T ss_pred             CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC--CCCHHHHH
Confidence            4799999999999999999999999999987554 333332   222221  257999999996 68853  33444333


Q ss_pred             HHHH----HcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        195 VFAR----EHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       195 ~~~~----~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ....    .+.+.+..|||++|+|+.+.++|+.+.+.
T Consensus       271 e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          271 HELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             HHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             HHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            2211    23466899999999999999999998774

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.33  E-value=9.1e-12  Score=99.41  Aligned_cols=124  Identities=13%  Similarity=0.075  Sum_probs=76.4

Q ss_pred             eeeEEEEEECCeEEEEEEEcCCChhhhh-----------hhhHhhccCCcEEEEEEeCCChhhH-HHHHHHHHHHHhhcC
Q psy13390        101 EFGARMITIDGKQIKLQIWDTAGQEAFR-----------SITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQHSN  168 (245)
Q Consensus       101 ~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-----------~~~~~~~~~~d~vi~v~d~~~~~s~-~~~~~~~~~~~~~~~  168 (245)
                      +.......+.+  ..+.||||||+..+.           .....+++.+|++++|+|+++.... ..+..|+..+.... 
T Consensus        60 ~~~~~~~~~~~--~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~~~~~~~~~~~~l~~~~~~~-  136 (260)
T 2xtp_A           60 TCSKSQGSWGN--REIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGRYTSQDQQAAQRVKEIFGED-  136 (260)
T ss_dssp             SCEEEEEEETT--EEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTCCCHHHHHHHHHHHHHHCGG-
T ss_pred             eeEEEEEEeCC--CEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCCCHHHHHHHHHHHHHhCch-
Confidence            33334445554  459999999986542           1223478999999999999862221 22223333332111 


Q ss_pred             CCCeEEEEEe-CCCCccCcccCH-------HHHHHHHHHcCCc---E--EEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        169 SNMVIMLIGN-KSDLDARREVKK-------EEGEVFAREHGLV---F--METSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       169 ~~~piivv~n-K~Dl~~~~~~~~-------~~~~~~~~~~~~~---~--~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      ...|.++|+| |+|+... .+..       .+...+....+..   +  +++||++|.|++++|.++.+.+..
T Consensus       137 ~~~~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          137 AMGHTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             GGGGEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhccEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHh
Confidence            1356666666 9998643 2211       2233355544432   2  789999999999999999998865

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.33  E-value=5.3e-12  Score=113.33  Aligned_cols=80  Identities=14%  Similarity=0.082  Sum_probs=60.0

Q ss_pred             ceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q psy13390        100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNK  179 (245)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK  179 (245)
                      .++......+....+.++||||+|+..|...+..+++.+|++++|+|+++....+.. .++..+..   .++|+++|+||
T Consensus        60 iti~~~~~~~~~~~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~-~~~~~~~~---~~ip~ilv~NK  135 (665)
T 2dy1_A           60 TTVRTGVAPLLFRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTE-RAWTVAER---LGLPRMVVVTK  135 (665)
T ss_dssp             SCCSCEEEEEEETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHH-HHHHHHHH---TTCCEEEEEEC
T ss_pred             CeEEecceEEeeCCEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHH-HHHHHHHH---ccCCEEEEecC
Confidence            334344444444467899999999999998899999999999999999876554433 34444433   35899999999


Q ss_pred             CCCc
Q psy13390        180 SDLD  183 (245)
Q Consensus       180 ~Dl~  183 (245)
                      +|+.
T Consensus       136 iD~~  139 (665)
T 2dy1_A          136 LDKG  139 (665)
T ss_dssp             GGGC
T ss_pred             Cchh
Confidence            9986

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.30  E-value=4.6e-14  Score=121.92  Aligned_cols=106  Identities=22%  Similarity=0.271  Sum_probs=74.2

Q ss_pred             EEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCc--ccCHH-
Q psy13390        115 KLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARR--EVKKE-  191 (245)
Q Consensus       115 ~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~--~~~~~-  191 (245)
                      .+.||||||++.|..++..++..+|++++|+|++++..-+.... +..+..   .++|+++++||+|+...+  .+..+ 
T Consensus        52 ~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~g~~~qT~e~-l~~~~~---~~vPiIVviNKiDl~~~~~~~v~~~l  127 (501)
T 1zo1_I           52 MITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEA-IQHAKA---AQVPVVVAVNKIDKPEADPDRVKNEL  127 (501)
T ss_dssp             CCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTTBSCTTTHHH-HHHHHH---TTCCEEEEEECSSSSTTCCCCTTCCC
T ss_pred             EEEEEECCCcHHHHHHHHHHHhhCCEEEEEeecccCccHHHHHH-HHHHHh---cCceEEEEEEeccccccCHHHHHHHH
Confidence            58999999999999999899999999999999988432222211 122222   468999999999986421  11100 


Q ss_pred             -HHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHH
Q psy13390        192 -EGEVFAREHG--LVFMETSAKLATNVEEAFIDTAK  224 (245)
Q Consensus       192 -~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~  224 (245)
                       +...++..++  ++++++||++|.|++++|+++..
T Consensus       128 ~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          128 SQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             CCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             HHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence             0000111222  68999999999999999999864

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.30  E-value=1.2e-11  Score=108.01  Aligned_cols=87  Identities=20%  Similarity=0.222  Sum_probs=58.8

Q ss_pred             CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE
Q psy13390         94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVI  173 (245)
Q Consensus        94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi  173 (245)
                      ..++.|.++......+....+.++||||||+..|...+..+++.+|++|+|+|++++...+. ..++..+.   ..++|+
T Consensus        62 ~E~~rGiTi~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t-~~~~~~~~---~~~ipi  137 (529)
T 2h5e_A           62 MEKQRGISITTSVMQFPYHDCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRT-RKLMEVTR---LRDTPI  137 (529)
T ss_dssp             --------CCTTEEEEEETTEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHH-HHHHHHHT---TTTCCE
T ss_pred             hcccCCcceeeeEEEEEECCeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHH-HHHHHHHH---HcCCCE
Confidence            34455555555555555555789999999999998888889999999999999998643322 22222222   246899


Q ss_pred             EEEEeCCCCcc
Q psy13390        174 MLIGNKSDLDA  184 (245)
Q Consensus       174 ivv~nK~Dl~~  184 (245)
                      ++++||+|+..
T Consensus       138 ivviNK~Dl~~  148 (529)
T 2h5e_A          138 LTFMNKLDRDI  148 (529)
T ss_dssp             EEEEECTTSCC
T ss_pred             EEEEcCcCCcc
Confidence            99999999854

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.30  E-value=1e-11  Score=97.91  Aligned_cols=124  Identities=15%  Similarity=0.073  Sum_probs=78.0

Q ss_pred             eeeEEEEEECCeEEEEEEEcCCCh-----------hhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-
Q psy13390        101 EFGARMITIDGKQIKLQIWDTAGQ-----------EAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-  168 (245)
Q Consensus       101 ~~~~~~~~~~~~~~~~~l~Dt~G~-----------~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-  168 (245)
                      +.......+.+.  .+.||||||.           +.+...+..+++++|++|+|+|++.....  ...|+..+..... 
T Consensus        67 ~~~~~~~~~~~~--~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~d~~~~~~~--~~~~l~~~~~~~~~  142 (239)
T 3lxx_A           67 KCEKRSSSWKET--ELVVVDTPGIFDTEVPNAETSKEIIRCILLTSPGPHALLLVVPLGRYTEE--EHKATEKILKMFGE  142 (239)
T ss_dssp             SCEEEEEEETTE--EEEEEECCSCC-----CHHHHHHHHHHHHHTTTCCSEEEEEEETTCCSSH--HHHHHHHHHHHHHH
T ss_pred             eEEEEEEEeCCc--eEEEEECCCccCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEeeCCCCCHH--HHHHHHHHHHHhhh
Confidence            333344455554  6899999993           34555566678899999999998753331  1223333322110 


Q ss_pred             -CCCeEEEEEeCCCCccCcccC------HHHHHHHHHHcCCcEEEeccCCC-----CCHHHHHHHHHHHHHH
Q psy13390        169 -SNMVIMLIGNKSDLDARREVK------KEEGEVFAREHGLVFMETSAKLA-----TNVEEAFIDTAKEIYE  228 (245)
Q Consensus       169 -~~~piivv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~~~~~i~~~i~~  228 (245)
                       ...|+++|+||+|+...+.+.      .+....+....+..++.+++..+     .++.++|..+...+.+
T Consensus       143 ~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          143 RARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence             236999999999986544332      13566777777878887776644     6888888887776643

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.29  E-value=6.9e-12  Score=97.04  Aligned_cols=59  Identities=39%  Similarity=0.509  Sum_probs=54.7

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|++|||||+||.+.+.+..+++..++..+++.|+++||++|.||+++|..+++.+...
T Consensus       146 ~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~elf~~l~~~i~~~  204 (211)
T 2g3y_A          146 IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR  204 (211)
T ss_dssp             SCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            58999999999988888999999999999999999999999999999999999988654

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.29  E-value=1.8e-12  Score=105.55  Aligned_cols=113  Identities=12%  Similarity=0.025  Sum_probs=77.7

Q ss_pred             EEEEEEcCCChh-------------hhhhhhHhhccCCcEEE-EEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q psy13390        114 IKLQIWDTAGQE-------------AFRSITRSYYRGAAGAL-LVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNK  179 (245)
Q Consensus       114 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~vi-~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK  179 (245)
                      ..+.||||||..             .+..++..|++.++.++ +|+|+++..+.++...++..+.   ..+.|+++|+||
T Consensus       125 ~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~---~~~~~~i~V~NK  201 (299)
T 2aka_B          125 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITK  201 (299)
T ss_dssp             CSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHC---TTCSSEEEEEEC
T ss_pred             CCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhC---CCCCeEEEEEEc
Confidence            569999999963             45567778999998776 7999987655544434444443   246899999999


Q ss_pred             CCCccCcccCHHHHHHHHHH--cC-CcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        180 SDLDARREVKKEEGEVFARE--HG-LVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       180 ~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      +|+........+........  .+ .+++++||++|.|++++|+++.+...-.
T Consensus       202 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~~~~  254 (299)
T 2aka_B          202 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAERKFF  254 (299)
T ss_dssp             GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHHHHH
T ss_pred             cccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHHHHH
Confidence            99975443222222210001  12 3578899999999999999998855433

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.28  E-value=1.8e-12  Score=98.57  Aligned_cols=75  Identities=20%  Similarity=0.299  Sum_probs=62.4

Q ss_pred             eEEEEEEEcCCChhhhhhhhHhhccC----CcEEEEEEeCC-ChhhHHHHHHHHHHHHhhc----CCCCeEEEEEeCCCC
Q psy13390        112 KQIKLQIWDTAGQEAFRSITRSYYRG----AAGALLVYDIT-RRETFNHLTTWLEDARQHS----NSNMVIMLIGNKSDL  182 (245)
Q Consensus       112 ~~~~~~l~Dt~G~~~~~~~~~~~~~~----~d~vi~v~d~~-~~~s~~~~~~~~~~~~~~~----~~~~piivv~nK~Dl  182 (245)
                      ..+.+.+|||+|++.+...+..++..    +|++++|||++ +..++.....|+..+....    ..++|+++|+||+|+
T Consensus        89 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  168 (193)
T 2ged_A           89 DGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  168 (193)
T ss_dssp             CCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             cCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCCchhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHh
Confidence            34569999999999988888777776    89999999999 8999999888887776542    257999999999999


Q ss_pred             ccCc
Q psy13390        183 DARR  186 (245)
Q Consensus       183 ~~~~  186 (245)
                      ...+
T Consensus       169 ~~~~  172 (193)
T 2ged_A          169 FTAR  172 (193)
T ss_dssp             TTCC
T ss_pred             cCCC
Confidence            7544

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.24  E-value=2.5e-11  Score=109.34  Aligned_cols=68  Identities=24%  Similarity=0.333  Sum_probs=57.5

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDA  184 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  184 (245)
                      .+.++||||+|+..|...+..+++.+|++|+|+|++++.+.+....|.. +..   .++|+++|+||+|+..
T Consensus        76 ~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~~~-~~~---~~~p~ivviNKiD~~~  143 (691)
T 1dar_A           76 DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKTG  143 (691)
T ss_dssp             TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            4679999999999999999999999999999999999888777665543 333   3589999999999854

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.21  E-value=1.2e-10  Score=105.03  Aligned_cols=69  Identities=23%  Similarity=0.256  Sum_probs=56.0

Q ss_pred             eEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q psy13390        112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDA  184 (245)
Q Consensus       112 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  184 (245)
                      ..+.++||||||+.+|...+..+++.+|++|+|+|+++....+....|.. +..   .++|+++|+||+|+..
T Consensus        80 ~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~~~-~~~---~~ip~ilviNKiD~~~  148 (704)
T 2rdo_7           80 EPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVWRQ-ANK---YKVPRIAFVNKMDRMG  148 (704)
T ss_pred             CceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHHHH-HHH---cCCCEEEEEeCCCccc
Confidence            44889999999999999899999999999999999998766655444432 222   3689999999999853

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.20  E-value=2.7e-13  Score=120.07  Aligned_cols=115  Identities=25%  Similarity=0.202  Sum_probs=57.7

Q ss_pred             cceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChh---hH---HHHHHHHHHHHhhcCCCCe
Q psy13390         99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE---TF---NHLTTWLEDARQHSNSNMV  172 (245)
Q Consensus        99 g~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~p  172 (245)
                      |.++......+......+.||||||+++|...+..+++.+|++|+|+|++++.   .+   ......+..+..   .++|
T Consensus       240 GiTid~~~~~~~~~~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~---lgip  316 (592)
T 3mca_A          240 GVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRA---LGIS  316 (592)
T ss_dssp             -------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHH---SSCC
T ss_pred             CeeEEeeEEEEEeCCeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHH---cCCC
Confidence            44444444445555678999999999999888888899999999999998642   11   011111222222   2465


Q ss_pred             -EEEEEeCCCCccCccc----CHHHHHHHH-HHcCC-----cEEEeccCCCCCHH
Q psy13390        173 -IMLIGNKSDLDARREV----KKEEGEVFA-REHGL-----VFMETSAKLATNVE  216 (245)
Q Consensus       173 -iivv~nK~Dl~~~~~~----~~~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~  216 (245)
                       +|+|+||+|+.....-    ..++...+. ...++     +++++||++|.|+.
T Consensus       317 ~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          317 EIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             CEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             eEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence             9999999998642110    112233333 33454     69999999999998

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.20  E-value=4.7e-11  Score=91.90  Aligned_cols=126  Identities=13%  Similarity=0.113  Sum_probs=77.5

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCCChh----------hhhhhhHhhc---cCCcEEEEEEeCCChhhHHH--HH
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQE----------AFRSITRSYY---RGAAGALLVYDITRRETFNH--LT  157 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~~~---~~~d~vi~v~d~~~~~s~~~--~~  157 (245)
                      .+.|+.|.++....+.+++   .+.+|||+|..          .++.....++   +.++++++++|++++.+..+  +.
T Consensus        54 ~~~~~~G~~~~~~~~~~~~---~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~  130 (210)
T 1pui_A           54 RTSKTPGRTQLINLFEVAD---GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMI  130 (210)
T ss_dssp             ---------CCEEEEEEET---TEEEEECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHH
T ss_pred             cccCCCccceeeEEEEecC---CEEEEECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHH
Confidence            4478888887655555544   47899999973          2333333444   57899999999998665432  22


Q ss_pred             HHHHHHHhhcCCCCeEEEEEeCCCCccCcc--cCHHHHHHHHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        158 TWLEDARQHSNSNMVIMLIGNKSDLDARRE--VKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       158 ~~~~~~~~~~~~~~piivv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      .|+.   .   .+.|+++++||+|+.....  .....++.++...+  +.++++||+++.|++++++++.+.+.
T Consensus       131 ~~~~---~---~~~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~  198 (210)
T 1pui_A          131 EWAV---D---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS  198 (210)
T ss_dssp             HHHH---H---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred             HHHH---H---cCCCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence            2322   1   3589999999999854211  11233444444443  46889999999999999999887653

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.19  E-value=7.2e-11  Score=87.91  Aligned_cols=60  Identities=40%  Similarity=0.520  Sum_probs=55.3

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|+++||||+|+.+.+.+..+++..++..++.+++++||++|.||+++|..+++.+....
T Consensus       112 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  171 (175)
T 2nzj_A          112 VPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAELFEGVVRQLRLRR  171 (175)
T ss_dssp             CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHHHhh
Confidence            589999999999888889999999999999999999999999999999999999886543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.17  E-value=8e-11  Score=89.59  Aligned_cols=60  Identities=38%  Similarity=0.510  Sum_probs=54.8

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|++|||||+||...+.+..+++..++..+++.|+++||++|.||+++|..+++.+....
T Consensus       115 ~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~lf~~l~~~~~~~~  174 (192)
T 2cjw_A          115 IPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKELFEGIVRQVRLRR  174 (192)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHHHHHHHHHHHHhhc
Confidence            589999999999888889999999999999999999999999999999999999986543

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.17  E-value=7.4e-11  Score=87.41  Aligned_cols=58  Identities=40%  Similarity=0.511  Sum_probs=54.7

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|+++||||+|+.+.+.+..+++..++...+.+++++||++|.|++++|..+++.+..
T Consensus       110 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~  167 (169)
T 3q85_A          110 LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL  167 (169)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHHHHHHHHHHHHh
Confidence            5899999999999889999999999999999999999999999999999999998864

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.16  E-value=7.7e-11  Score=89.91  Aligned_cols=58  Identities=40%  Similarity=0.511  Sum_probs=54.3

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|++|||||+|+.+.+.++.+++..++..+++.++++||++|.||+++|..+++.+..
T Consensus       131 ~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          131 LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRELFEGAVRQIRL  188 (195)
T ss_dssp             CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred             CCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence            5899999999998888899999999999999999999999999999999999998854

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.16  E-value=1.1e-10  Score=86.10  Aligned_cols=59  Identities=41%  Similarity=0.530  Sum_probs=55.0

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|+++||||+|+.+.+.+..+++..++...+++++++||++|.|++++|..+++.+...
T Consensus       107 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          107 VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             CCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence            58999999999998899999999999999999999999999999999999999988653

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.15  E-value=1.5e-10  Score=104.43  Aligned_cols=68  Identities=24%  Similarity=0.232  Sum_probs=56.8

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDA  184 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  184 (245)
                      .+.++||||+|+..|...+..+++.+|++++|+|++++.+.+....|.. +..   .++|+++|+||+|+..
T Consensus        74 ~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~~~-~~~---~~~p~ilviNK~Dl~~  141 (693)
T 2xex_A           74 GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVWRQ-ATT---YGVPRIVFVNKMDKLG  141 (693)
T ss_dssp             TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSTT
T ss_pred             CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHHHH-HHH---cCCCEEEEEECCCccc
Confidence            4679999999999999889999999999999999998877776655543 333   3589999999999854

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.14  E-value=8.7e-11  Score=105.92  Aligned_cols=111  Identities=12%  Similarity=0.085  Sum_probs=79.1

Q ss_pred             EEEEEcCCChhhh---hhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHH
Q psy13390        115 KLQIWDTAGQEAF---RSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKE  191 (245)
Q Consensus       115 ~~~l~Dt~G~~~~---~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~  191 (245)
                      .+.||||||....   ...+..+++.+|++|+|+|++++.+..+...|...+..   .+.|+++|+||+|+.....++.+
T Consensus       175 ~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~---~~~~iiiVlNK~Dl~~~~~~~~e  251 (695)
T 2j69_A          175 GIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKG---RGLTVFFLVNAWDQVRESLIDPD  251 (695)
T ss_dssp             TEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTT---SCCCEEEEEECGGGGGGGCSSTT
T ss_pred             CeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHh---hCCCEEEEEECcccccccccChh
Confidence            5899999998653   34556789999999999999988887776655444332   35789999999998644311111


Q ss_pred             ----------HHHH-----HHHH--------cCCcEEEeccC--------------CCCCHHHHHHHHHHHHHH
Q psy13390        192 ----------EGEV-----FARE--------HGLVFMETSAK--------------LATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       192 ----------~~~~-----~~~~--------~~~~~~~~Sa~--------------~~~~i~~~~~~i~~~i~~  228 (245)
                                ....     +...        ...+++++||+              +|.|+++++..+.+.+..
T Consensus       252 e~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~  325 (695)
T 2j69_A          252 DVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR  325 (695)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence                      1111     1111        12369999999              999999999999887754

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.14  E-value=1.3e-10  Score=88.13  Aligned_cols=60  Identities=35%  Similarity=0.593  Sum_probs=56.3

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|++|||||+|+.+.+.+..+++..++...++.++++||++|.||+++|..+++.+.++.
T Consensus       129 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  188 (191)
T 3dz8_A          129 AQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENISVRQAFERLVDAICDKM  188 (191)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHhc
Confidence            589999999999888899999999999999999999999999999999999999987764

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.13  E-value=1.9e-10  Score=87.24  Aligned_cols=61  Identities=84%  Similarity=1.191  Sum_probs=56.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ   61 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~   61 (245)
                      +|+++|+||+|+.+.+.+..+++..++...++.++++||++|.||+++|..+++.+.+...
T Consensus       127 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  187 (191)
T 2a5j_A          127 MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQ  187 (191)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            5899999999998888899999999999999999999999999999999999999987654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.13  E-value=2.7e-12  Score=107.49  Aligned_cols=187  Identities=14%  Similarity=0.135  Sum_probs=102.3

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHH----HHHhCC---cEEEecccCCCcHHHHHHHHHHHHHHHhccCccccccccCC
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVF----AREHGL---VFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEANG   73 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~----~~~~~~---~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~   73 (245)
                      .|+++|+||+||.+. .+..++...|    ++..|.   .++++||++|.|+++++..+.+....             ..
T Consensus        97 ~p~ilV~NK~DL~~~-~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~~-------------~~  162 (368)
T 3h2y_A           97 NKVLLVGNKADLIPK-SVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRGG-------------KD  162 (368)
T ss_dssp             SCEEEEEECGGGSCT-TSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHTT-------------SC
T ss_pred             CcEEEEEEChhcCCc-ccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhccc-------------ce
Confidence            489999999999653 3445555544    556677   68999999999999999888764311             01


Q ss_pred             cccCCCCCCCCCC-----CC------CCCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhh--------hHhh
Q psy13390         74 IKIGPQHSPNNPS-----LP------SGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSI--------TRSY  134 (245)
Q Consensus        74 ~~~~~~~~~~~~~-----l~------~~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~--------~~~~  134 (245)
                      +.+.+..+..++.     .+      .......+..|++.....+.+...   +.++||||......+        ...+
T Consensus       163 i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~  239 (368)
T 3h2y_A          163 VYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEE---SSLYDTPGIINHHQMAHYVGKQSLKLI  239 (368)
T ss_dssp             EEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSS---CEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred             EEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCC---eEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence            1111111100000     00      112223555666666666655543   899999997432211        1111


Q ss_pred             --ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEecc
Q psy13390        135 --YRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSA  209 (245)
Q Consensus       135 --~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  209 (245)
                        .+..+.++++++.....-+..+..    +......+.|+++++||.|...... .......+.+..+..++..++
T Consensus       240 ~~~~~i~~~~~~l~~~~~~~~g~l~~----~d~l~~~~~~~~~v~nk~d~~~~~~-~~~~~~~~~~~~g~~l~p~~~  311 (368)
T 3h2y_A          240 TPTKEIKPMVFQLNEEQTLFFSGLAR----FDYVSGGRRAFTCHFSNRLTIHRTK-LEKADELYKNHAGDLLSPPTP  311 (368)
T ss_dssp             SCSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEE-HHHHHHHHHHHBTTTBCSSCH
T ss_pred             ccccccCceEEEEcCCCEEEEcceEE----EEEecCCCceEEEEecCcccccccc-HHHHHHHHHHHhCCccCCCch
Confidence              367888999998743211111111    1222235689999999999864332 223333444555554444443

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.12  E-value=1.8e-10  Score=86.53  Aligned_cols=61  Identities=46%  Similarity=0.702  Sum_probs=51.3

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ   61 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~   61 (245)
                      +|+++|+||+|+.+.+.+..+++..++..++++++++||++|.||+++|..+++.+.+...
T Consensus       114 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~i~~~~~  174 (183)
T 2fu5_C          114 VEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD  174 (183)
T ss_dssp             CEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            5899999999998888899999999999999999999999999999999999999876643

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.12  E-value=2.1e-10  Score=86.69  Aligned_cols=59  Identities=20%  Similarity=0.384  Sum_probs=53.9

Q ss_pred             CeEEEEeecCCC--ccCCCCCHHHHHHHHHHhC-CcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDL--DARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl--~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|++|||||+|+  ...+.++.+++..++..++ ..|+++||++|.||+++|..+++.+.+.
T Consensus       120 ~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~~l~~~i~~~  181 (184)
T 3ihw_A          120 VPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQDVAQKVVAL  181 (184)
T ss_dssp             SCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHHHHHHHHHHH
Confidence            589999999999  4578899999999999997 8999999999999999999999998765

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.12  E-value=2.2e-11  Score=101.80  Aligned_cols=112  Identities=13%  Similarity=0.085  Sum_probs=79.6

Q ss_pred             EEEEEEcCCChhhh-------------hhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q psy13390        114 IKLQIWDTAGQEAF-------------RSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKS  180 (245)
Q Consensus       114 ~~~~l~Dt~G~~~~-------------~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~  180 (245)
                      ..+.||||||..++             ..+...|++++|++|+|+|.++.....  ..|+..+......+.|+++|+||+
T Consensus       136 ~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~--~~~~~l~~~~~~~~~~~i~V~nK~  213 (360)
T 3t34_A          136 VNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT--SDAIKISREVDPSGDRTFGVLTKI  213 (360)
T ss_dssp             CSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG--CHHHHHHHHSCTTCTTEEEEEECG
T ss_pred             CCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC--HHHHHHHHHhcccCCCEEEEEeCC
Confidence            36999999998776             556778999999999999876533221  233444444444568999999999


Q ss_pred             CCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        181 DLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       181 Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      |+........+....+...++.+|+.+|+.++.++++.+........
T Consensus       214 Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~~  260 (360)
T 3t34_A          214 DLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARKR  260 (360)
T ss_dssp             GGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHHH
T ss_pred             ccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHHH
Confidence            99765544444444444456778999999999999887766554443

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.11  E-value=2.7e-10  Score=86.49  Aligned_cols=61  Identities=41%  Similarity=0.608  Sum_probs=56.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ   61 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~   61 (245)
                      +|+++|+||+|+.+.+.+..+++..++..++++++++||++|.||+++|..+++.+.+...
T Consensus       122 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~  182 (196)
T 3tkl_A          122 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIKKRMG  182 (196)
T ss_dssp             CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHHHHHHHHHHHHHHC-
T ss_pred             CCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHHHhc
Confidence            5899999999999889999999999999999999999999999999999999999987643

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.10  E-value=5.4e-12  Score=105.68  Aligned_cols=192  Identities=16%  Similarity=0.133  Sum_probs=107.9

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHH----HHHhCC---cEEEecccCCCcHHHHHHHHHHHHHHHhccCccccccccCC
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVF----AREHGL---VFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEANG   73 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~----~~~~~~---~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~   73 (245)
                      .|+++|+||+||.+. .+..+....|    ++..|.   .++.+||++|.|+++++..+.+....             ..
T Consensus        99 ~piilV~NK~DLl~~-~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~-------------~~  164 (369)
T 3ec1_A           99 NPILLVGNKADLLPR-SVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREG-------------GD  164 (369)
T ss_dssp             SCEEEEEECGGGSCT-TCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTT-------------SC
T ss_pred             CCEEEEEEChhcCCC-ccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhccc-------------Cc
Confidence            389999999999653 3444445444    445566   68899999999999999888664311             01


Q ss_pred             cccCCCCCCCCCC-----CCC-----CCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhh--------hhHhhc
Q psy13390         74 IKIGPQHSPNNPS-----LPS-----GSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRS--------ITRSYY  135 (245)
Q Consensus        74 ~~~~~~~~~~~~~-----l~~-----~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~--------~~~~~~  135 (245)
                      +.+.+..+..++.     .+.     ......+..|++.....+.+...   +.++||||......        ....++
T Consensus       165 i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~---~~liDtPG~~~~~~~~~~l~~~~l~~~~  241 (369)
T 3ec1_A          165 VYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESG---ATLYDTPGIINHHQMAHFVDARDLKIIT  241 (369)
T ss_dssp             EEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTT---CEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred             EEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCC---eEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence            1111111111111     000     12223445566665555555543   79999999643221        112222


Q ss_pred             --cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCC
Q psy13390        136 --RGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT  213 (245)
Q Consensus       136 --~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  213 (245)
                        +..+.++++++.....-+..+..    +......+.|+++++||.|....... ......+.+..+..+...++....
T Consensus       242 ~~~~i~~~~~~l~~~~~~~~g~l~~----l~~l~~~~~~~~~v~~k~d~~~~~~~-~~~~~~~~~~~g~~l~p~~~~~~~  316 (369)
T 3ec1_A          242 PKREIHPRVYQLNEGQTLFFGGLAR----LDYIKGGRRSFVCYMANELTVHRTKL-EKADSLYANQLGELLSPPSKRYAA  316 (369)
T ss_dssp             CSSCCCCEEEEECTTEEEEETTTEE----EEEEESSSEEEEEEECTTSCEEEEEG-GGHHHHHHHHBTTTBCSSCGGGTT
T ss_pred             cccccCceEEEEcCCceEEECCEEE----EEEccCCCceEEEEecCCcccccccH-HHHHHHHHHhcCCccCCCCchhhh
Confidence              67899999999843211111111    22222356899999999998643322 233344555566655555555443


Q ss_pred             C
Q psy13390        214 N  214 (245)
Q Consensus       214 ~  214 (245)
                      +
T Consensus       317 ~  317 (369)
T 3ec1_A          317 E  317 (369)
T ss_dssp             T
T ss_pred             h
Confidence            3

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.10  E-value=2.5e-10  Score=87.58  Aligned_cols=61  Identities=38%  Similarity=0.629  Sum_probs=56.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ   61 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~   61 (245)
                      +|+++||||+|+.+.+.+..+++..++...+..++++||++|.||+++|..+++.+.+...
T Consensus       132 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~i~~~~~  192 (201)
T 2ew1_A          132 VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISEAR  192 (201)
T ss_dssp             CEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence            5899999999998888899999999999999999999999999999999999999976643

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.10  E-value=2.9e-10  Score=87.09  Aligned_cols=60  Identities=45%  Similarity=0.577  Sum_probs=55.6

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|++|||||+|+.+.+.+..+++..++...++ .++++||++|.||+++|..+++.+.+..
T Consensus       135 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  195 (201)
T 2hup_A          135 IVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATELIMRH  195 (201)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            58999999999988888999999999999999 8999999999999999999999987653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.10  E-value=2.8e-10  Score=85.09  Aligned_cols=60  Identities=18%  Similarity=0.357  Sum_probs=53.6

Q ss_pred             CeEEEEeecCCC--ccCCCCCHHHHHHHHHHh-CCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDL--DARREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl--~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|++|||||+|+  ...+.+..+++..++... +.+++++||++|.||+++|..+++.+.+..
T Consensus       109 ~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~  171 (178)
T 2iwr_A          109 LALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYGLNVDRVFQEVAQKVVTLR  171 (178)
T ss_dssp             CEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTTBTHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEeccccCCHHHHHHHHHHHHHHHH
Confidence            589999999999  456789999999999887 689999999999999999999999987654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.10  E-value=3.1e-10  Score=86.76  Aligned_cols=62  Identities=50%  Similarity=0.715  Sum_probs=57.0

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhcc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE   62 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~   62 (245)
                      +|+++|+||+|+...+.+..+++..++...++.++++||++|.||+++|..+++.+.+....
T Consensus       131 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~~~  192 (200)
T 2o52_A          131 IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVEEAFLKCARTILNKIDS  192 (200)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred             CcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHhc
Confidence            58999999999988888999999999999999999999999999999999999999876544

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.10  E-value=2.9e-10  Score=85.60  Aligned_cols=62  Identities=53%  Similarity=0.743  Sum_probs=57.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhcc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE   62 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~   62 (245)
                      +|+++|+||+|+...+.+..+++..++...+++++++||++|.|++++|..+++.+.+....
T Consensus       116 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~~  177 (186)
T 2bme_A          116 IVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES  177 (186)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHS
T ss_pred             CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHhhh
Confidence            58999999999988888999999999999999999999999999999999999999876544

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.09  E-value=3.7e-10  Score=85.42  Aligned_cols=60  Identities=38%  Similarity=0.584  Sum_probs=55.6

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|+++|+||+|+.+.+.+..+++..++..++..++++||++|.|++++|..+++.+.++.
T Consensus       128 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~  187 (189)
T 2gf9_A          128 AQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENINVKQVFERLVDVICEKM  187 (189)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            589999999999888889999999999999999999999999999999999999987654

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.08  E-value=4.5e-10  Score=98.54  Aligned_cols=72  Identities=21%  Similarity=0.194  Sum_probs=58.0

Q ss_pred             ECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q psy13390        109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDA  184 (245)
Q Consensus       109 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  184 (245)
                      +.++.+.++|+||||+-.|..-....++-+|++|+|+|+.++.--+...-|.. +..   .++|.+++.||+|...
T Consensus        95 ~~~~~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~-a~~---~~lp~i~fINK~Dr~~  166 (548)
T 3vqt_A           95 FPYRDRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDV-CRM---RATPVMTFVNKMDREA  166 (548)
T ss_dssp             EEETTEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCCEEEEEECTTSCC
T ss_pred             EEECCEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHHHHH-HHH---hCCceEEEEecccchh
Confidence            33445779999999999999999999999999999999998866666555533 333   3589999999999753

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.08  E-value=1.9e-10  Score=86.21  Aligned_cols=59  Identities=34%  Similarity=0.469  Sum_probs=55.3

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|+++|+||+|+.+.+.+..+++..++..++++++++||++|.|++++|..+++.+...
T Consensus       112 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  170 (181)
T 3t5g_A          112 IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAEKM  170 (181)
T ss_dssp             CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred             CCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            58999999999988899999999999999999999999999999999999999988654

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.07  E-value=3.9e-10  Score=84.31  Aligned_cols=60  Identities=35%  Similarity=0.624  Sum_probs=55.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|+++|+||+|+.+.+.+..+++..++...+..++++||++|.|++++|..+++.+.+..
T Consensus       115 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~~  174 (181)
T 2fn4_A          115 FPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ  174 (181)
T ss_dssp             CCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHHhh
Confidence            489999999999888889999999999999999999999999999999999999987654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.07  E-value=4.5e-10  Score=93.97  Aligned_cols=96  Identities=23%  Similarity=0.274  Sum_probs=73.2

Q ss_pred             ChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHH----HHHH
Q psy13390        123 GQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGE----VFAR  198 (245)
Q Consensus       123 G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~----~~~~  198 (245)
                      ..+.|+..++.+++.++++++|+|++++.     ..|...+.+.. .++|+++|+||+|+.... ...+...    .++.
T Consensus        55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~-----~~~~~~l~~~~-~~~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~  127 (368)
T 3h2y_A           55 TDDDFLRILNGIGKSDALVVKIVDIFDFN-----GSWLPGLHRFV-GNNKVLLVGNKADLIPKS-VKHDKVKHWMRYSAK  127 (368)
T ss_dssp             -CHHHHHHHHHHHHSCCEEEEEEETTSHH-----HHCCTTHHHHS-SSSCEEEEEECGGGSCTT-SCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhccCcEEEEEEECCCCc-----ccHHHHHHHHh-CCCcEEEEEEChhcCCcc-cCHHHHHHHHHHHHH
Confidence            56788999999999999999999999853     34555565554 478999999999996432 2333333    3356


Q ss_pred             HcCC---cEEEeccCCCCCHHHHHHHHHHH
Q psy13390        199 EHGL---VFMETSAKLATNVEEAFIDTAKE  225 (245)
Q Consensus       199 ~~~~---~~~~~Sa~~~~~i~~~~~~i~~~  225 (245)
                      ..++   +++++||++|.|++++++.+.+.
T Consensus       128 ~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~  157 (368)
T 3h2y_A          128 QLGLKPEDVFLISAAKGQGIAELADAIEYY  157 (368)
T ss_dssp             HTTCCCSEEEECCTTTCTTHHHHHHHHHHH
T ss_pred             HcCCCcccEEEEeCCCCcCHHHHHhhhhhh
Confidence            6677   79999999999999999988654

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.06  E-value=3.2e-10  Score=83.98  Aligned_cols=57  Identities=35%  Similarity=0.559  Sum_probs=53.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++|+||+|+.+.+.+..+++..++...+.+++++||++|.|++++|..+++.+.
T Consensus       112 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          112 ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             SEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             CeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHh
Confidence            589999999999888889999999999999999999999999999999999998875

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.05  E-value=4.7e-10  Score=85.36  Aligned_cols=59  Identities=39%  Similarity=0.628  Sum_probs=55.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCC-cHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~f~~l~~~~~~~   59 (245)
                      +|+++|+||+|+.+.+.+..+++..++..++.+++++||++|. ||+++|..+++.+.+.
T Consensus       133 ~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~  192 (196)
T 2atv_A          133 VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR  192 (196)
T ss_dssp             CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence            5899999999998888899999999999999999999999999 9999999999998764

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.05  E-value=6.2e-10  Score=83.16  Aligned_cols=61  Identities=34%  Similarity=0.452  Sum_probs=56.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ   61 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~   61 (245)
                      +|+++|+||+|+.+.+.+..+++..++...+.+++++||++|.|++++|..+.+.+.+...
T Consensus       114 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  174 (181)
T 3tw8_B          114 VCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEMFNCITELVLRAKK  174 (181)
T ss_dssp             SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            5899999999999888899999999999999999999999999999999999999876643

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.05  E-value=3.3e-10  Score=83.51  Aligned_cols=57  Identities=40%  Similarity=0.613  Sum_probs=53.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++|+||+|+.+.+.+..+++..++..++.+++++||++|.|++++|..+++.+.
T Consensus       110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  166 (168)
T 1u8z_A          110 VPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             SCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHH
Confidence            589999999999888889999999999999999999999999999999999998875

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.04  E-value=2.8e-10  Score=87.06  Aligned_cols=60  Identities=35%  Similarity=0.518  Sum_probs=55.7

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|+++||||+|+...+.+..+++..++..++.+++++||++|.||+++|..+++.+.+..
T Consensus       130 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~i~~~~  189 (201)
T 3oes_A          130 VPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQGIFTKVIQEIARVE  189 (201)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHHHC-
T ss_pred             CCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHhhh
Confidence            489999999999988999999999999999999999999999999999999999987653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.04  E-value=5.9e-11  Score=96.71  Aligned_cols=114  Identities=16%  Similarity=0.206  Sum_probs=65.0

Q ss_pred             CCeEEEEEEEcCCCh-------hhhhhhhH-------hhccC-------------CcEEEEEEeCCChhhHHHHHHHHHH
Q psy13390        110 DGKQIKLQIWDTAGQ-------EAFRSITR-------SYYRG-------------AAGALLVYDITRRETFNHLTTWLED  162 (245)
Q Consensus       110 ~~~~~~~~l~Dt~G~-------~~~~~~~~-------~~~~~-------------~d~vi~v~d~~~~~s~~~~~~~~~~  162 (245)
                      .+....+++|||+|.       +.+..+..       .+++.             +++++++.+.+.. +++....  ..
T Consensus        72 ~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~-~Ld~~~~--~~  148 (301)
T 2qnr_A           72 RGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGH-GLKPLDV--AF  148 (301)
T ss_dssp             --CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSS-SCCHHHH--HH
T ss_pred             CCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCccc-CCCHHHH--HH
Confidence            344568999999998       55555544       44432             3456666654321 2333321  22


Q ss_pred             HHhhcCCCCeEEEEEeCCCCccCccc--CHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        163 ARQHSNSNMVIMLIGNKSDLDARREV--KKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       163 ~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +.... .++|+++|+||+|+...+++  ..+++..++..++++++++||++| |++++|.++.+.+.+
T Consensus       149 l~~l~-~~~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          149 MKAIH-NKVNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             HHHHT-TTSCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred             HHHHH-hcCCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            23333 46799999999998654332  245677788888999999999999 999999999998864

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.04  E-value=1.1e-09  Score=92.76  Aligned_cols=114  Identities=14%  Similarity=0.033  Sum_probs=82.5

Q ss_pred             EEEEEEcCCChhh----hhhhhH---hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--CCCeEEEEEeCCCCcc
Q psy13390        114 IKLQIWDTAGQEA----FRSITR---SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN--SNMVIMLIGNKSDLDA  184 (245)
Q Consensus       114 ~~~~l~Dt~G~~~----~~~~~~---~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--~~~piivv~nK~Dl~~  184 (245)
                      ..+.+||++|...    +..+..   ..++.++.+++++|++ ..++.++..|..++..+..  ...|.++|+||+|+..
T Consensus       205 ~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~  283 (416)
T 1udx_A          205 ERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLE  283 (416)
T ss_dssp             CEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSC
T ss_pred             ceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhh
Confidence            4689999999742    111222   2356799999999998 5567777777666655431  2579999999999864


Q ss_pred             CcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        185 RREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      .  ...+.........+++++.+||+++.|++++++++.+.+.+..
T Consensus       284 ~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~~  327 (416)
T 1udx_A          284 E--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRSTP  327 (416)
T ss_dssp             H--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHTSC
T ss_pred             H--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHhcc
Confidence            3  1233444445556788999999999999999999999986543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.04  E-value=6.5e-10  Score=83.53  Aligned_cols=60  Identities=38%  Similarity=0.589  Sum_probs=55.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|+++|+||+|+.+.+.+..+++..++..++.+++++||++|.|++++|..+++.+.+..
T Consensus       124 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  183 (187)
T 2a9k_A          124 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK  183 (187)
T ss_dssp             CCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHHHHHHHHHHHHHhh
Confidence            589999999999888889999999999999999999999999999999999999987653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.04  E-value=6.7e-10  Score=84.92  Aligned_cols=61  Identities=36%  Similarity=0.552  Sum_probs=56.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ   61 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~   61 (245)
                      +|+++|+||+|+.+.+.+..+++..++..++++++++||++|.||+++|..+++.+.+...
T Consensus       114 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  174 (203)
T 1zbd_A          114 AQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEKMS  174 (203)
T ss_dssp             CEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHHHHHHHH
Confidence            5899999999998888899999999999999999999999999999999999999877654

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.03  E-value=8e-10  Score=83.79  Aligned_cols=60  Identities=55%  Similarity=0.797  Sum_probs=55.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|+++|+||+|+...+.+..+++..++...++.++++||++|.|++++|..+++.+.+..
T Consensus       131 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~  190 (193)
T 2oil_A          131 IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETSALDSTNVELAFETVLKEIFAKV  190 (193)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            589999999999888888999999999999999999999999999999999999987654

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.03  E-value=7.8e-10  Score=83.58  Aligned_cols=61  Identities=38%  Similarity=0.498  Sum_probs=56.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ   61 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~   61 (245)
                      +|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|..+++.+.+...
T Consensus       128 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~~~  188 (195)
T 3bc1_A          128 PDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISHAIEMLLDLIMKRME  188 (195)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            5899999999998888899999999999999999999999999999999999999876653

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.03  E-value=8.3e-10  Score=84.41  Aligned_cols=60  Identities=38%  Similarity=0.589  Sum_probs=55.6

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|+++|+||+|+.+.+.+..+++..++..++.+++++||++|.||+++|..+++.+.+..
T Consensus       120 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~  179 (206)
T 2bov_A          120 VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREIRARK  179 (206)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHcc
Confidence            589999999999888889999999999999999999999999999999999999987653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.02  E-value=4.5e-10  Score=82.66  Aligned_cols=57  Identities=44%  Similarity=0.685  Sum_probs=53.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++|+||+|+.+.+++..+++..++...+.+++++||++|.|++++|..+++.+.
T Consensus       109 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  165 (167)
T 1kao_A          109 VPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHHHHHHHHHHHh
Confidence            589999999999888889999999999999999999999999999999999998774

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.02  E-value=8.5e-10  Score=82.47  Aligned_cols=58  Identities=52%  Similarity=0.705  Sum_probs=53.9

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|..+++.+.+
T Consensus       117 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (180)
T 2g6b_A          117 VALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELKR  174 (180)
T ss_dssp             CEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             CcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            5899999999998888899999999999999999999999999999999999998854

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.01  E-value=7.8e-10  Score=82.51  Aligned_cols=57  Identities=35%  Similarity=0.433  Sum_probs=52.6

Q ss_pred             eEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          2 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      |+++|+||+|+.+.+.+..+++..++...+++++++||++|.||+++|..+++.+.+
T Consensus       117 ~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          117 LVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSVFLCFQKVAAEILG  173 (178)
T ss_dssp             EEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred             eEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            489999999998888899999999999999999999999999999999999988754

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.01  E-value=8.4e-10  Score=81.35  Aligned_cols=56  Identities=43%  Similarity=0.682  Sum_probs=51.9

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHh-CCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|+++|+||+|+.+.+.+..+++..++..+ +.+++++||++|.|++++|..+++.+
T Consensus       109 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  165 (167)
T 1c1y_A          109 VPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQI  165 (167)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHHHHHHHHHHHH
Confidence            589999999999888889999999999987 78999999999999999999999876

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.01  E-value=4.7e-10  Score=82.90  Aligned_cols=56  Identities=46%  Similarity=0.711  Sum_probs=51.8

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|+++||||+|+.+.+.+..+++..++...+.+++++||++|.|++++|..+++.+
T Consensus       112 ~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             CcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            58999999999988888999999999999999999999999999999999998754

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.01  E-value=4.4e-10  Score=86.97  Aligned_cols=59  Identities=25%  Similarity=0.414  Sum_probs=53.4

Q ss_pred             CeEEEEeecCCCccC------------CCCCHHHHHHHHHHhCC-cEEEecccCCCc-HHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATN-VEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~f~~l~~~~~~~   59 (245)
                      +|++|||||+|+.+.            +.+..+++..++..+++ .|+++||++|.| |+++|..+++.+...
T Consensus       132 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~g~v~~lf~~l~~~~~~~  204 (214)
T 3q3j_B          132 TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIYLEGSAFTSEKSIHSIFRTASMLCLNK  204 (214)
T ss_dssp             SEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCHHHHHHHHHHHHHHHHC-
T ss_pred             CCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEEEEeccCCCcccHHHHHHHHHHHHhcc
Confidence            589999999999763            78999999999999999 899999999998 999999999988654

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.01  E-value=1e-09  Score=81.14  Aligned_cols=58  Identities=47%  Similarity=0.685  Sum_probs=52.7

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|+++|+||+|+ ..+.+..+++..+++..+++++++||++|.|++++|..+++.+.+.
T Consensus       109 ~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          109 AQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             CEEEEEEECTTC-TTCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             CcEEEEEECccC-CcCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            589999999999 4567888999999999999999999999999999999999988654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.01  E-value=1.1e-09  Score=84.55  Aligned_cols=61  Identities=36%  Similarity=0.508  Sum_probs=56.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ   61 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~   61 (245)
                      +|+++|+||+|+.+.+.+..+++..++...++.++++||++|.||+++|..+++.+.+...
T Consensus       142 ~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  202 (217)
T 2f7s_A          142 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME  202 (217)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHHHHHHHHHHHHHHhh
Confidence            5899999999998888899999999999999999999999999999999999999877543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.01  E-value=6.3e-10  Score=84.48  Aligned_cols=59  Identities=39%  Similarity=0.660  Sum_probs=53.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHh-CCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|+++|+||+|+.+.+.+..+++..++... +..++++||++|.||+++|..+++.+.++
T Consensus       132 ~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~  191 (192)
T 2il1_A          132 AELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNVDEIFLKLVDDILKK  191 (192)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             CcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            589999999999888889999999999885 78999999999999999999999988653

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.00  E-value=1.3e-09  Score=83.45  Aligned_cols=61  Identities=39%  Similarity=0.606  Sum_probs=56.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ   61 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~   61 (245)
                      +|+++|+||+|+.+.+.+..+++..++...+.+++++||++|.||+++|..+++.+.+...
T Consensus       114 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~i~~~~~  174 (206)
T 2bcg_Y          114 VLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS  174 (206)
T ss_dssp             CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCC
T ss_pred             CCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence            5899999999998888899999999999999999999999999999999999999976643

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.00  E-value=6.7e-10  Score=88.71  Aligned_cols=88  Identities=10%  Similarity=0.025  Sum_probs=56.0

Q ss_pred             CcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhcc---------CCcEEEEEEeCCChhhHHH-HHHHHHHHHhhc
Q psy13390         98 GGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYR---------GAAGALLVYDITRRETFNH-LTTWLEDARQHS  167 (245)
Q Consensus        98 ig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~---------~~d~vi~v~d~~~~~s~~~-~~~~~~~~~~~~  167 (245)
                      .+.+.......+......+.||||||++.+....+.+++         ++|++++|+|++... +.. ...|+..+....
T Consensus        68 ~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~-~~~~~~~~~~~l~~~~  146 (262)
T 3def_A           68 QAEGLRPVMVSRTMGGFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYA-VDELDKQVVIAITQTF  146 (262)
T ss_dssp             CC-CCCCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSC-CCHHHHHHHHHHHHHH
T ss_pred             CCcceeeEEEEEEECCeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCC-CCHHHHHHHHHHHHHh
Confidence            333333333333333347999999999877554444333         889999999987654 332 245666666544


Q ss_pred             CC--CCeEEEEEeCCCCccCc
Q psy13390        168 NS--NMVIMLIGNKSDLDARR  186 (245)
Q Consensus       168 ~~--~~piivv~nK~Dl~~~~  186 (245)
                      ..  ..|+++|+||+|+...+
T Consensus       147 ~~~~~~~~ivv~nK~Dl~~~~  167 (262)
T 3def_A          147 GKEIWCKTLLVLTHAQFSPPD  167 (262)
T ss_dssp             CGGGGGGEEEEEECTTCCCST
T ss_pred             chhhhcCEEEEEeCcccCCCC
Confidence            32  24999999999985433

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.00  E-value=7.4e-10  Score=83.97  Aligned_cols=59  Identities=19%  Similarity=0.234  Sum_probs=53.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKIQ   61 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~   61 (245)
                      +|++|||||+|+.+  .+..+++..++...+. .++++||++|.||+++|..+++.+.+...
T Consensus       136 ~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~~~  195 (198)
T 3t1o_A          136 VPIVIQVNKRDLPD--ALPVEMVRAVVDPEGKFPVLEAVATEGKGVFETLKEVSRLVLARVA  195 (198)
T ss_dssp             SCEEEEEECTTSTT--CCCHHHHHHHHCTTCCSCEEECBGGGTBTHHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEEchhccc--ccCHHHHHHHHHhcCCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            58999999999965  4789999999999999 99999999999999999999999987653

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.99  E-value=1.1e-09  Score=83.07  Aligned_cols=59  Identities=27%  Similarity=0.475  Sum_probs=53.4

Q ss_pred             CeEEEEeecCCCcc--CCCCCHHHHHHHHHHhCCc-EEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDA--RREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~--~~~v~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|+++||||+|+.+  .+.+..+++..++..++.. ++++||++|.||+++|..+++.+.+.
T Consensus       128 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  189 (194)
T 3reg_A          128 AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIGLNEVFEKSVDCIFSN  189 (194)
T ss_dssp             SEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBSHHHHHHHHHHHHHCS
T ss_pred             CCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCCHHHHHHHHHHHHHhc
Confidence            58999999999975  3778999999999999988 99999999999999999999988643

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.99  E-value=6.9e-10  Score=81.89  Aligned_cols=57  Identities=35%  Similarity=0.343  Sum_probs=53.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++|+||+|+.+.+.+..+++..++...+.+++++||++|.|++++|..+++.+.
T Consensus       110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~  166 (168)
T 1z2a_A          110 IPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL  166 (168)
T ss_dssp             CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             CCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence            589999999999887888999999999999999999999999999999999998875

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.99  E-value=9.2e-10  Score=81.36  Aligned_cols=56  Identities=39%  Similarity=0.609  Sum_probs=52.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|+++|+||+|+.+.+++..+++..++...+.+++++||++|.|++++|..+++.+
T Consensus       112 ~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          112 IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             SEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             CcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHH
Confidence            58999999999988888999999999999999999999999999999999998765

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.98  E-value=5.8e-10  Score=86.74  Aligned_cols=61  Identities=46%  Similarity=0.653  Sum_probs=54.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ   61 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~   61 (245)
                      +|++||+||+|+.+.+.+..+++..++...++.++++||++|.||+++|..+++.+.+...
T Consensus       119 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~~~  179 (223)
T 3cpj_B          119 VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKAFEELINTIYQKVS  179 (223)
T ss_dssp             CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHHHHHHHHHHTTCC-
T ss_pred             CeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHhh
Confidence            5899999999998888899999999999999999999999999999999999999875543

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=98.98  E-value=8.3e-10  Score=90.39  Aligned_cols=112  Identities=11%  Similarity=0.073  Sum_probs=69.5

Q ss_pred             EEEEEEcCCChhh-------------hhhhhHhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q psy13390        114 IKLQIWDTAGQEA-------------FRSITRSYYRGAAGALLVYDITRRE-TFNHLTTWLEDARQHSNSNMVIMLIGNK  179 (245)
Q Consensus       114 ~~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK  179 (245)
                      ..+.||||||...             +...+..+++.+|++++|+|.++.. ...+...++..+   ...+.|+++|+||
T Consensus       131 ~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~---~~~~~~~i~v~NK  207 (315)
T 1jwy_B          131 VNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITK  207 (315)
T ss_dssp             CSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEEC
T ss_pred             CCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHh---CCCCCcEEEEEcC
Confidence            4699999999753             4556778999999999999974322 111111222222   2246899999999


Q ss_pred             CCCccCcccCHHHHHHHHHHcCCcEEEec---cCC---CCCHHHHHHHHHHHHHH
Q psy13390        180 SDLDARREVKKEEGEVFAREHGLVFMETS---AKL---ATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       180 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S---a~~---~~~i~~~~~~i~~~i~~  228 (245)
                      +|+........+.........+..++.+|   |.+   +.|+.+++..+...+..
T Consensus       208 ~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~~  262 (315)
T 1jwy_B          208 LDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFKN  262 (315)
T ss_dssp             TTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHHT
T ss_pred             cccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHhC
Confidence            99875443222222210011124455555   445   78899999888777643

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.97  E-value=8.4e-10  Score=82.58  Aligned_cols=58  Identities=52%  Similarity=0.737  Sum_probs=53.0

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|+++|+||+|+.+.+.+..+++..++...+++++++||++|.|++++|..+++.+.+
T Consensus       118 ~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  175 (181)
T 2efe_B          118 MVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEIFYEIARRLPR  175 (181)
T ss_dssp             CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred             CcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            5899999999998888899999999999999999999999999999999999987643

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.96  E-value=8.7e-10  Score=85.51  Aligned_cols=106  Identities=13%  Similarity=0.067  Sum_probs=69.5

Q ss_pred             EEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHH
Q psy13390        114 IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEG  193 (245)
Q Consensus       114 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~  193 (245)
                      ..+.+|||+|+-...   ..+...++.+++|+|+++....  ...+..   ..   +.|+++|+||+|+........++.
T Consensus       109 ~d~iiidt~G~~~~~---~~~~~~~~~~i~vvd~~~~~~~--~~~~~~---~~---~~~~iiv~NK~Dl~~~~~~~~~~~  177 (221)
T 2wsm_A          109 CDLLLIENVGNLICP---VDFDLGENYRVVMVSVTEGDDV--VEKHPE---IF---RVADLIVINKVALAEAVGADVEKM  177 (221)
T ss_dssp             CSEEEEEEEEBSSGG---GGCCCSCSEEEEEEEGGGCTTH--HHHCHH---HH---HTCSEEEEECGGGHHHHTCCHHHH
T ss_pred             CCEEEEeCCCCCCCC---chhccccCcEEEEEeCCCcchh--hhhhhh---hh---hcCCEEEEecccCCcchhhHHHHH
Confidence            458999999951111   1122367899999998865321  111111   11   368899999999864332345555


Q ss_pred             HHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        194 EVFAREH--GLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       194 ~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      .......  +++++++||++|.|++++|+++.+.+....
T Consensus       178 ~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~~  216 (221)
T 2wsm_A          178 KADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNVHS  216 (221)
T ss_dssp             HHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC---
T ss_pred             HHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHHH
Confidence            5555443  478999999999999999999998876544

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.96  E-value=9.9e-10  Score=83.83  Aligned_cols=57  Identities=40%  Similarity=0.549  Sum_probs=52.1

Q ss_pred             CeEEEEeecCCCc------cCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLD------ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~------~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++|+||+|+.      ..+.+..+++..++...+++++++||++|.||+++|..+++.+.
T Consensus       134 ~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g~gv~el~~~l~~~i~  196 (199)
T 2p5s_A          134 VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDGSNIVEAVLHLAREVK  196 (199)
T ss_dssp             CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             CCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            5899999999996      45778899999999999999999999999999999999998874

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=98.96  E-value=2.5e-09  Score=85.10  Aligned_cols=111  Identities=15%  Similarity=-0.041  Sum_probs=68.7

Q ss_pred             EEEEEEcCCChhhhhhhhH------hhccCCcEEEEEEeCCChhhHHHHHHHHH-HHHhhcCCCCeEEEEEeCCCCccCc
Q psy13390        114 IKLQIWDTAGQEAFRSITR------SYYRGAAGALLVYDITRRETFNHLTTWLE-DARQHSNSNMVIMLIGNKSDLDARR  186 (245)
Q Consensus       114 ~~~~l~Dt~G~~~~~~~~~------~~~~~~d~vi~v~d~~~~~s~~~~~~~~~-~~~~~~~~~~piivv~nK~Dl~~~~  186 (245)
                      +.+.||||+|+........      .++.. +++++++|+....+..+...... ........+.|+++|+||+|+....
T Consensus       109 ~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~~  187 (262)
T 1yrb_A          109 NDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEE  187 (262)
T ss_dssp             CSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCHH
T ss_pred             CCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEecccccccc
Confidence            4699999999876543322      25566 89999998764333222221111 0111111358999999999986432


Q ss_pred             ccCHHHHHH----------------------------HHHHcC--CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        187 EVKKEEGEV----------------------------FAREHG--LVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       187 ~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ..  ++...                            ++..++  .+++++||++|.|++++++++.+.+.
T Consensus       188 ~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          188 EK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             HH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             cH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhc
Confidence            11  11111                            012322  47999999999999999999988764

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=98.95  E-value=5.2e-10  Score=89.74  Aligned_cols=92  Identities=12%  Similarity=0.008  Sum_probs=59.3

Q ss_pred             CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhH-------hh--ccCCcEEEEEEeCCChhhHHH-HHHHHHHH
Q psy13390         94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITR-------SY--YRGAAGALLVYDITRRETFNH-LTTWLEDA  163 (245)
Q Consensus        94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~-------~~--~~~~d~vi~v~d~~~~~s~~~-~~~~~~~~  163 (245)
                      +.++.|.++......+......+.+|||||...+.....       .+  .+.+|++++|+|++.. ++.. ...|+..+
T Consensus        67 ~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~-~~~~~~~~~~~~l  145 (270)
T 1h65_A           67 ISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAY-RVDNLDKLVAKAI  145 (270)
T ss_dssp             CCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCC-CCCHHHHHHHHHH
T ss_pred             ccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCC-cCCHHHHHHHHHH
Confidence            344455555555555544556799999999876543211       12  3579999999998753 3332 23566666


Q ss_pred             HhhcCCC--CeEEEEEeCCCCccCc
Q psy13390        164 RQHSNSN--MVIMLIGNKSDLDARR  186 (245)
Q Consensus       164 ~~~~~~~--~piivv~nK~Dl~~~~  186 (245)
                      ......+  +|+++|+||+|+...+
T Consensus       146 ~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          146 TDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             HHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             HHHhCcccccCEEEEEECcccCCcC
Confidence            5543222  6999999999986544

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.95  E-value=2.3e-09  Score=81.73  Aligned_cols=60  Identities=27%  Similarity=0.350  Sum_probs=53.8

Q ss_pred             CeEEEEeecCCCcc------------CCCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDA------------RREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|+++||||+|+.+            .+.+..+++..++..++. .++++||++|.||+++|..+++.+.+..
T Consensus       125 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  197 (201)
T 2q3h_A          125 APIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASYIECSALTQKNLKEVFDAAIVAGIQYS  197 (201)
T ss_dssp             SCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence            58999999999975            367889999999999987 8999999999999999999999887653

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=98.94  E-value=4.7e-10  Score=93.52  Aligned_cols=105  Identities=10%  Similarity=0.050  Sum_probs=70.8

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHH
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEE  192 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~  192 (245)
                      .+.+.||||+|...   .....+..+|++++|+|......++.+...        -.+.|+++|+||+|+....... ..
T Consensus       171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~~~--------~~~~p~ivVlNK~Dl~~~~~~~-~~  238 (355)
T 3p32_A          171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIKKG--------VLELADIVVVNKADGEHHKEAR-LA  238 (355)
T ss_dssp             TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCCTT--------SGGGCSEEEEECCCGGGHHHHH-HH
T ss_pred             CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHHHh--------HhhcCCEEEEECCCCcChhHHH-HH
Confidence            35689999999543   223346899999999998765444322110        0236899999999986432111 11


Q ss_pred             HHHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        193 GEVFARE----------HGLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       193 ~~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      ...+...          ++.+++.+||++|.|++++++++.+.+...
T Consensus       239 ~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~~  285 (355)
T 3p32_A          239 ARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQVL  285 (355)
T ss_dssp             HHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHh
Confidence            1112111          246899999999999999999999888653

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.94  E-value=9.6e-10  Score=92.04  Aligned_cols=98  Identities=21%  Similarity=0.207  Sum_probs=71.5

Q ss_pred             CChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHH----HH
Q psy13390        122 AGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEV----FA  197 (245)
Q Consensus       122 ~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~----~~  197 (245)
                      ..++.|++..+.++++++++++|+|++++.+     .|...+.... .+.|+++|+||+|+.... ...+....    ++
T Consensus        56 ~~~e~f~~~L~~~~~~~~lil~VvD~~d~~~-----s~~~~l~~~l-~~~piilV~NK~DLl~~~-~~~~~~~~~l~~~~  128 (369)
T 3ec1_A           56 LDDDDFLSMLHRIGESKALVVNIVDIFDFNG-----SFIPGLPRFA-ADNPILLVGNKADLLPRS-VKYPKLLRWMRRMA  128 (369)
T ss_dssp             ---CHHHHHHHHHHHHCCEEEEEEETTCSGG-----GCCSSHHHHC-TTSCEEEEEECGGGSCTT-CCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHhhccCcEEEEEEECCCCCC-----chhhHHHHHh-CCCCEEEEEEChhcCCCc-cCHHHHHHHHHHHH
Confidence            4578899999999999999999999998763     3444444443 368999999999996432 22333333    35


Q ss_pred             HHcCC---cEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        198 REHGL---VFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       198 ~~~~~---~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      ...++   +++.+||++|.|++++++.+.+..
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~  160 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYR  160 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHHhhc
Confidence            55676   689999999999999999886543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.94  E-value=1e-09  Score=83.27  Aligned_cols=57  Identities=39%  Similarity=0.558  Sum_probs=52.8

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++|+||+|+.+.+.+..+++..++...+++++++||++|.||+++|..+++.+.
T Consensus       129 ~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  185 (192)
T 2fg5_A          129 IVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQIP  185 (192)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence            589999999999887889999999999999999999999999999999999988764

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.93  E-value=2.9e-09  Score=79.53  Aligned_cols=59  Identities=27%  Similarity=0.450  Sum_probs=51.6

Q ss_pred             CeEEEEeecCCCc-cCCCCCHHHHHHHHHH-hCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLD-ARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~-~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|+++|+||+|+. ..+.+..+++..++.. .+.+++++||++|.||+++|..+++.+.+.
T Consensus       119 ~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          119 FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             CCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            4899999999994 4567889999999984 567899999999999999999999988765

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.93  E-value=1.7e-09  Score=82.77  Aligned_cols=60  Identities=25%  Similarity=0.477  Sum_probs=44.2

Q ss_pred             CeEEEEeecCCCcc-CCCCCHHHHHHHHHHhCCcEEEecccC-CCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDA-RREVKKEEGEVFAREHGLVFMETSAKL-ATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~-~~~v~~~~~~~~~~~~~~~~~~~Sa~~-~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|+++|+||+|+.+ .+.++.+++..++..++..++++||++ |.|++++|..+++.+.+..
T Consensus       133 ~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~gi~~l~~~i~~~~~~~~  194 (208)
T 2yc2_C          133 LRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGKDADAPFLSIATTFYRNY  194 (208)
T ss_dssp             CEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-------CHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCcCHHHHHHHHHHHHHHHH
Confidence            58999999999987 788999999999999999999999999 9999999999999887654

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.92  E-value=1.2e-09  Score=81.38  Aligned_cols=56  Identities=46%  Similarity=0.704  Sum_probs=52.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|+++|+||+|+.+.+.+..+++..++...+.+++++||++|.|++++|..+++.+
T Consensus       120 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~  175 (179)
T 2y8e_A          120 VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  175 (179)
T ss_dssp             SEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHHHHHHHHTC
T ss_pred             CcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            58999999999988888999999999999999999999999999999999998765

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.92  E-value=4.3e-09  Score=80.90  Aligned_cols=60  Identities=47%  Similarity=0.690  Sum_probs=54.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ   61 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~   61 (245)
                      +|+++|+||+|+ ..+.+..+++..++..++++++++||++|.||+++|..+++.+.+...
T Consensus       126 ~piilv~nK~Dl-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~~~  185 (213)
T 3cph_A          126 AQLLLVGNKSDM-ETRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKID  185 (213)
T ss_dssp             SEEEEEEECTTC-SSCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCC-cccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHh
Confidence            489999999999 457788899999999999999999999999999999999999877654

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.92  E-value=2.4e-09  Score=82.75  Aligned_cols=59  Identities=31%  Similarity=0.499  Sum_probs=52.9

Q ss_pred             CeEEEEeecCCCccC------------CCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|++|||||+|+...            +.++.+++..+++..+. .++++||++|.||+++|..+++.+.+.
T Consensus       139 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~~~~~  210 (214)
T 2j1l_A          139 VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVFQEAAEVALSS  210 (214)
T ss_dssp             CCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            589999999999764            37888999999999997 899999999999999999999988654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.92  E-value=2.4e-09  Score=79.14  Aligned_cols=56  Identities=46%  Similarity=0.592  Sum_probs=51.7

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|+++|+||+|+...+.+..+++..++..++.+++++||++|.|++++|..+++.+
T Consensus       110 ~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~  165 (172)
T 2erx_A          110 IPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  165 (172)
T ss_dssp             CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             CCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHHHHHHHHHH
Confidence            48999999999988888999999999999999999999999999999999998755

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.91  E-value=4.8e-09  Score=78.88  Aligned_cols=59  Identities=37%  Similarity=0.590  Sum_probs=53.6

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|+++|+||+|+. .+.+..+++..++..++.+++++||++|.|++++|..+++.+....
T Consensus       110 ~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  168 (189)
T 4dsu_A          110 VPMVLVGNKCDLP-SRTVDTKQAQDLARSYGIPFIETSAKTRQGVDDAFYTLVREIRKHK  168 (189)
T ss_dssp             CCEEEEEECTTSS-SCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECccCc-ccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHhh
Confidence            5899999999997 4678889999999999999999999999999999999999987654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.91  E-value=1.7e-09  Score=79.85  Aligned_cols=56  Identities=46%  Similarity=0.748  Sum_probs=50.9

Q ss_pred             CeEEEEeecCCCccC---CCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDAR---REVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~---~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|+++|+||+|+...   +.+..+++..++...+++++++||++|.|++++|..+++.+
T Consensus       109 ~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          109 IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             CEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             CcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHH
Confidence            589999999999765   77889999999999999999999999999999999998754

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.91  E-value=2.7e-09  Score=79.46  Aligned_cols=57  Identities=35%  Similarity=0.581  Sum_probs=50.9

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHH-HhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAR-EHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|+++|+||+|+. .+.+..+++..++. ..+.+++++||++|.|++++|..+++.+.+
T Consensus       117 ~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          117 FPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             SCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            4899999999997 57788999999998 456899999999999999999999998864

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.90  E-value=5.7e-09  Score=79.36  Aligned_cols=59  Identities=37%  Similarity=0.594  Sum_probs=52.9

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|+++|+||+| ...+.+..+++..++...+.+++++||++|.|++++|..+++.+.+..
T Consensus       148 ~piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l~~~l~~~~~~~~  206 (208)
T 3clv_A          148 YIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNIKNIFYMLAEEIYKNI  206 (208)
T ss_dssp             CEEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHHHhc
Confidence            58999999999 556788999999999999999999999999999999999999887653

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.89  E-value=2.5e-09  Score=82.67  Aligned_cols=60  Identities=23%  Similarity=0.283  Sum_probs=51.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|+++|+||+|+.+.+.+..+++..++...+..++++||++|.|++++|..+++.+....
T Consensus       118 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  177 (218)
T 4djt_A          118 APIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLPFLHLARIFTGRP  177 (218)
T ss_dssp             SCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHHHHHHHHHHHCCT
T ss_pred             CCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhccc
Confidence            489999999999888889999999999999999999999999999999999999886543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.89  E-value=5.1e-09  Score=79.20  Aligned_cols=58  Identities=43%  Similarity=0.682  Sum_probs=52.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|+++|+||+|+. .+.+..+++..++...++.++++||++|.||+++|..+++.+.+.
T Consensus       122 ~p~ilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (195)
T 1x3s_A          122 IVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT  179 (195)
T ss_dssp             CEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             CcEEEEEECCcCc-ccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHhh
Confidence            5899999999995 467888999999999999999999999999999999999988653

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.89  E-value=6.4e-10  Score=82.34  Aligned_cols=55  Identities=18%  Similarity=0.169  Sum_probs=47.7

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|+++|+||+|+...+.+.. ++..++..++.+++++||++|.||+++|..+++.+
T Consensus       109 ~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~~l~~~l~~~~  163 (165)
T 2wji_A          109 ANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAV  163 (165)
T ss_dssp             CCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHT
T ss_pred             CCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHHHHHHHHHHHh
Confidence            58999999999976666654 46788999999999999999999999999998765

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=98.88  E-value=4.2e-09  Score=96.85  Aligned_cols=70  Identities=23%  Similarity=0.275  Sum_probs=59.8

Q ss_pred             CCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390        110 DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD  183 (245)
Q Consensus       110 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  183 (245)
                      ++..+.++||||||+.+|...+..+++.+|++|+|+|++++.+++....|.... .   .++|+++|+||+|+.
T Consensus        94 ~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa~~g~~~qt~~~~~~~~-~---~~~p~ilviNK~D~~  163 (842)
T 1n0u_A           94 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQAL-G---ERIKPVVVINKVDRA  163 (842)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHHHH-H---TTCEEEEEEECHHHH
T ss_pred             cCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHHH-H---cCCCeEEEEECCCcc
Confidence            455789999999999999999999999999999999999998888766554432 2   358999999999985

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.87  E-value=7.5e-09  Score=78.11  Aligned_cols=58  Identities=38%  Similarity=0.596  Sum_probs=53.0

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|+++|+||+|+.. +.+..+++..+++.++++++++||++|.|++++|..+++.+.+.
T Consensus       127 ~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  184 (190)
T 3con_A          127 VPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVEDAFYTLVREIRQY  184 (190)
T ss_dssp             CCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            48999999999976 67888999999999999999999999999999999999988654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.87  E-value=6.1e-09  Score=76.36  Aligned_cols=56  Identities=43%  Similarity=0.647  Sum_probs=51.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++|+||+|+.+ +.+..+++..++..++.+++++||++|.|++++|..+++.+.
T Consensus       109 ~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          109 VPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             CCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             CcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            58999999999976 667888999999999999999999999999999999998874

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.86  E-value=3.2e-09  Score=79.66  Aligned_cols=57  Identities=25%  Similarity=0.418  Sum_probs=51.5

Q ss_pred             CeEEEEeecCCCccC------------CCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++|+||+|+.+.            +.+..+++..++...+. +++++||++|.|++++|..+++.+.
T Consensus       110 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          110 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             CCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEEEEecCCCccCHHHHHHHHHHHHh
Confidence            589999999999753            67889999999999997 8999999999999999999998874

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.86  E-value=6.3e-09  Score=79.86  Aligned_cols=58  Identities=28%  Similarity=0.449  Sum_probs=52.4

Q ss_pred             CeEEEEeecCCCccC------------CCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|+++|+||+|+...            +.+..+++..++...+. .++++||++|.||+++|..+++.+.+
T Consensus       130 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi~el~~~l~~~i~~  200 (207)
T 2fv8_A          130 VPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDYLECSAKTKEGVREVFETATRAALQ  200 (207)
T ss_dssp             CCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHS
T ss_pred             CCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            589999999999765            66889999999999998 89999999999999999999998864

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.84  E-value=8.7e-09  Score=78.78  Aligned_cols=59  Identities=32%  Similarity=0.533  Sum_probs=52.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHH-HhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAR-EHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~-~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|+++|+||+|+. .+.+..+++..++. ..+.+++++||++|.|++++|..+++.+.+..
T Consensus       118 ~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~~  177 (207)
T 1vg8_A          118 FPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQE  177 (207)
T ss_dssp             SCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            4899999999997 56778888998988 56789999999999999999999999987654

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.83  E-value=8.1e-10  Score=98.78  Aligned_cols=72  Identities=18%  Similarity=0.191  Sum_probs=56.5

Q ss_pred             EECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390        108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD  183 (245)
Q Consensus       108 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  183 (245)
                      .+.++.+.++|+||||+..|..-....++-+|++|+|+|+.++-.-+...-|.. +..+   ++|.+++.||+|..
T Consensus        61 ~~~~~~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~-a~~~---~lp~i~~INKmDr~  132 (638)
T 3j25_A           61 SFQWENTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRILFHA-LRKM---GIPTIFFINKIDQN  132 (638)
T ss_dssp             CCBCSSCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHH-HHHH---TCSCEECCEECCSS
T ss_pred             EEEECCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHH-HHHc---CCCeEEEEeccccc
Confidence            344455679999999999999999999999999999999998765554433332 3333   48999999999974

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=98.83  E-value=1.3e-09  Score=92.39  Aligned_cols=126  Identities=16%  Similarity=0.133  Sum_probs=57.9

Q ss_pred             CCCcceeeEEEEEECCeEEEEEEEcCCChhhhh-------hh------------------hHhhccCCcE--EEEEEeCC
Q psy13390         96 SGGGVEFGARMITIDGKQIKLQIWDTAGQEAFR-------SI------------------TRSYYRGAAG--ALLVYDIT  148 (245)
Q Consensus        96 ~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-------~~------------------~~~~~~~~d~--vi~v~d~~  148 (245)
                      +|++.+.....+...+....+++|||+|...+.       .+                  .+.++.++++  ++++.+.+
T Consensus        70 ~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt  149 (418)
T 2qag_C           70 KTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPS  149 (418)
T ss_dssp             -CCEEEEEECC------CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-
T ss_pred             cceeeeeEEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCc
Confidence            455443333333333444579999999986531       11                  1224455554  44444433


Q ss_pred             ChhhHHHHH-HHHHHHHhhcCCCCeEEEEEeCCCCccCcccCH--HHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q psy13390        149 RRETFNHLT-TWLEDARQHSNSNMVIMLIGNKSDLDARREVKK--EEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE  225 (245)
Q Consensus       149 ~~~s~~~~~-~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  225 (245)
                      . .+++... .|+..+.    .++|+|+|+||+|+...+++..  +.+...+...+++++++||+++.++.++|..+...
T Consensus       150 ~-~~L~~~d~~~lk~L~----~~v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          150 G-HGLKPLDIEFMKRLH----EKVNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             C-CSCCHHHHHHHHHHT----TTSEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred             c-cCCCHHHHHHHHHHh----ccCcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence            1 2344433 4555553    3689999999999865544443  56667777889999999999999999988777654


Q ss_pred             H
Q psy13390        226 I  226 (245)
Q Consensus       226 i  226 (245)
                      +
T Consensus       225 i  225 (418)
T 2qag_C          225 L  225 (418)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.83  E-value=2.7e-09  Score=82.13  Aligned_cols=59  Identities=27%  Similarity=0.483  Sum_probs=51.9

Q ss_pred             CeEEEEeecCCCccCCC--------CCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARRE--------VKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~--------v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|++|||||+|+.+.+.        +..+++..++..++. +++++||++|.||+++|..+++.+.+.
T Consensus       114 ~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  181 (212)
T 2j0v_A          114 VPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECSSKTQQNVKAVFDTAIKVVLQP  181 (212)
T ss_dssp             CCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECCTTTCTTHHHHHHHHHHHHHCC
T ss_pred             CCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEccCCCCCCHHHHHHHHHHHHhhh
Confidence            58999999999976543        488899999999996 899999999999999999999988644

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.83  E-value=7.4e-09  Score=78.61  Aligned_cols=56  Identities=41%  Similarity=0.525  Sum_probs=50.8

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++|+||+|+.+ +.+..+++..++..++..++++||++|.||+++|..+++.+.
T Consensus       115 ~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~  170 (199)
T 2gf0_A          115 IPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKELFQELLTLET  170 (199)
T ss_dssp             SCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHCS
T ss_pred             CCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHHHHHHHHHHh
Confidence            48999999999975 678889999999999999999999999999999999998764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.82  E-value=9.1e-09  Score=80.23  Aligned_cols=60  Identities=17%  Similarity=0.044  Sum_probs=49.3

Q ss_pred             CeEEEEeecCCCccCCCCCHH---HHHHHHHHhC--CcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKE---EGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~---~~~~~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|+++|+||+|+.+.+.+..+   .+..++...+  ..++++||++|.||+++|..+++.+.+..
T Consensus       143 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~~~~  207 (228)
T 2qu8_A          143 KSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLTGVGVEQAKITACELLKNDQ  207 (228)
T ss_dssp             CCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEecccCCCHHHHHHHHHHHHHHHH
Confidence            589999999999877777765   4566777777  78999999999999999999999886553

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.81  E-value=1.4e-08  Score=81.74  Aligned_cols=102  Identities=12%  Similarity=0.035  Sum_probs=69.3

Q ss_pred             EEcCCChh-hhhhhhHhhccCCcEEEEEEeCCChhhHH--HHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHH
Q psy13390        118 IWDTAGQE-AFRSITRSYYRGAAGALLVYDITRRETFN--HLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGE  194 (245)
Q Consensus       118 l~Dt~G~~-~~~~~~~~~~~~~d~vi~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~  194 (245)
                      +-..||+. +........++.+|++++|+|+.++.+..  .+.+|+        .++|+++|+||+|+.....  .+...
T Consensus         3 i~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--------~~kp~ilVlNK~DL~~~~~--~~~~~   72 (282)
T 1puj_A            3 IQWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--------KNKPRIMLLNKADKADAAV--TQQWK   72 (282)
T ss_dssp             ------CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--------SSSCEEEEEECGGGSCHHH--HHHHH
T ss_pred             CcCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--------CCCCEEEEEECcccCCHHH--HHHHH
Confidence            33466764 44445566899999999999999987664  333332        4689999999999964211  12223


Q ss_pred             HHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        195 VFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       195 ~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      .+....+++++++||+++.|++++++.+.+.+...
T Consensus        73 ~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~  107 (282)
T 1puj_A           73 EHFENQGIRSLSINSVNGQGLNQIVPASKEILQEK  107 (282)
T ss_dssp             HHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             HHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHH
Confidence            33344578999999999999999999888777543

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=98.78  E-value=7.7e-10  Score=92.17  Aligned_cols=109  Identities=14%  Similarity=0.083  Sum_probs=67.6

Q ss_pred             EEEEEEcCCChh-------------hhhhhhHhhccCCcE-EEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeC
Q psy13390        114 IKLQIWDTAGQE-------------AFRSITRSYYRGAAG-ALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNK  179 (245)
Q Consensus       114 ~~~~l~Dt~G~~-------------~~~~~~~~~~~~~d~-vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK  179 (245)
                      ..+.||||||..             .+..+...|++.++. +++|.|++....-.+...++..   ....+.|+++|+||
T Consensus       130 ~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~---~~~~~~~~i~V~NK  206 (353)
T 2x2e_A          130 LNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKE---VDPQGQRTIGVITK  206 (353)
T ss_dssp             CSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHH---HCTTCTTEEEEEEC
T ss_pred             CCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHH---hCcCCCceEEEecc
Confidence            569999999963             455667778876655 4555666543222222223333   33356899999999


Q ss_pred             CCCccCcccCHHHHHH--HHHHcC-CcEEEeccCCCCCHHHHHHHHHHH
Q psy13390        180 SDLDARREVKKEEGEV--FAREHG-LVFMETSAKLATNVEEAFIDTAKE  225 (245)
Q Consensus       180 ~Dl~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~  225 (245)
                      +|+.............  +....+ .+++.+||++|.|++++++++.+.
T Consensus       207 ~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e  255 (353)
T 2x2e_A          207 LDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  255 (353)
T ss_dssp             GGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred             ccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence            9986543311211110  001123 247889999999999999998873

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.76  E-value=1.4e-08  Score=76.38  Aligned_cols=56  Identities=23%  Similarity=0.202  Sum_probs=48.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCc-------EEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLV-------FMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-------~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|+++|+||+|+...+   .+++..++..++.+       ++++||++|.|++++|..+++.+.+.
T Consensus       123 ~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          123 IPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             CCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             CceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence            5899999999997654   56788899988874       69999999999999999999988654

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=98.74  E-value=8.6e-09  Score=86.95  Aligned_cols=49  Identities=20%  Similarity=0.209  Sum_probs=33.0

Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFI  220 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~  220 (245)
                      .+|+++|+||+|+. ... ............+.+++.+||+.+.++.++++
T Consensus       214 ~kP~i~v~NK~D~~-~~~-~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          214 NKPMVIAANKADAA-SDE-QIKRLVREEEKRGYIVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             HSCEEEEEECGGGS-CHH-HHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred             CCCEEEEEeCcccc-chH-HHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence            48999999999985 211 11222222233367899999999999877543

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.74  E-value=4.3e-10  Score=85.83  Aligned_cols=57  Identities=44%  Similarity=0.619  Sum_probs=45.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|++||+||+|+.+.+.+..+++..++..++++++++||++|.||+++|..+++.+.
T Consensus       139 ~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~l~~~l~~~l~  195 (199)
T 3l0i_B          139 VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQSFMTMAAEIK  195 (199)
T ss_dssp             SEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHHHHHHHTTTTT
T ss_pred             CCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999888888888889999999999999999999999999999987664

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=98.71  E-value=1.2e-08  Score=84.44  Aligned_cols=104  Identities=13%  Similarity=0.017  Sum_probs=65.5

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCH--
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKK--  190 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--  190 (245)
                      .+.+.||||+|......   ...+.+|++++|+|++....++.+..   ..     .+.|.++|+||+|+.....+..  
T Consensus       148 ~~~i~liDTpG~~~~~~---~~~~~aD~vl~Vvd~~~~~~~~~l~~---~~-----~~~p~ivv~NK~Dl~~~~~~~~~~  216 (341)
T 2p67_A          148 GYDVVIVETVGVGQSET---EVARMVDCFISLQIAGGGDDLQGIKK---GL-----MEVADLIVINKDDGDNHTNVAIAR  216 (341)
T ss_dssp             TCSEEEEEEECCTTHHH---HHHTTCSEEEEEECC------CCCCH---HH-----HHHCSEEEECCCCTTCHHHHHHHH
T ss_pred             CCCEEEEeCCCccchHH---HHHHhCCEEEEEEeCCccHHHHHHHH---hh-----hcccCEEEEECCCCCChHHHHHHH
Confidence            35699999999754332   24689999999999976533221111   00     1368899999999864221110  


Q ss_pred             HHHHHHHHHc-------CCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        191 EEGEVFAREH-------GLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       191 ~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ++........       ..+++.+||++|.|++++++++.+.+.
T Consensus       217 ~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          217 HMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            1122211121       346899999999999999999998765

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=98.69  E-value=1.8e-08  Score=82.83  Aligned_cols=58  Identities=24%  Similarity=0.393  Sum_probs=52.2

Q ss_pred             CeEEEEeecCCCccC------------CCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|+++||||+|+.+.            +.+..+++..++...+. +++++||++|.||+++|..+++.+..
T Consensus       260 ~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  330 (332)
T 2wkq_A          260 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVLC  330 (332)
T ss_dssp             SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             CcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHhc
Confidence            589999999999653            67899999999999997 89999999999999999999988753

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.67  E-value=9.7e-09  Score=77.29  Aligned_cols=57  Identities=18%  Similarity=0.163  Sum_probs=49.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|+++|+||+|+...+.+. +++..+++.++.+++++||++|.|++++|+.+++.+..
T Consensus       113 ~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~  169 (188)
T 2wjg_A          113 ANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKD  169 (188)
T ss_dssp             CCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTT
T ss_pred             CCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHh
Confidence            5899999999997666555 45788899999999999999999999999999988754

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.66  E-value=1.3e-08  Score=77.16  Aligned_cols=58  Identities=19%  Similarity=0.268  Sum_probs=43.7

Q ss_pred             CeEEEEeecCCCccCCCCCHHHH-HHH-----HHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEG-EVF-----AREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~-~~~-----~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|++||+||+|+.....  .++. ..+     ++..++.++++||++|.||+++|..+++.+.+..
T Consensus       128 ~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~  191 (199)
T 4bas_A          128 VPFLFFANKMDAAGAKT--AAELVEILDLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQS  191 (199)
T ss_dssp             CCEEEEEECTTSTTCCC--HHHHHHHHTHHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             CCEEEEEECcCCCCCCC--HHHHHHHhcchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence            48999999999976532  2221 111     1335678999999999999999999999987664

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.64  E-value=1.6e-07  Score=84.98  Aligned_cols=68  Identities=22%  Similarity=0.259  Sum_probs=55.9

Q ss_pred             eEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390        112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD  183 (245)
Q Consensus       112 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  183 (245)
                      +.+.++|+||||+-.|..-....++-+|++|+|+|+.++-.-+...-|.+ ..++   ++|.+++.||+|..
T Consensus        83 ~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~~v~~~-a~~~---~lp~i~~iNKiDr~  150 (709)
T 4fn5_A           83 DNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSETVWRQ-ANKY---GVPRIVYVNKMDRQ  150 (709)
T ss_dssp             CCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHH-HHHH---TCCEEEEEECSSST
T ss_pred             CCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHHHHHHH-HHHc---CCCeEEEEcccccc
Confidence            46889999999999999999999999999999999998766665444443 3333   48999999999974

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.64  E-value=1.8e-08  Score=77.97  Aligned_cols=58  Identities=33%  Similarity=0.484  Sum_probs=49.0

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|+++||||+|+.+.+. .. ++..++...+..++++||++|.||+++|..+++.+....
T Consensus       120 ~p~ilv~nK~Dl~~~~~-~~-~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~l~~~~  177 (221)
T 3gj0_A          120 IPIVLCGNKVDIKDRKV-KA-KSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGDP  177 (221)
T ss_dssp             CCEEEEEECTTSSSCSS-CG-GGCCHHHHHTCEEEECBGGGTBTTTHHHHHHHHHHHTCT
T ss_pred             CCEEEEEECCccccccc-cH-HHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhCc
Confidence            58999999999976443 33 567788889999999999999999999999999886543

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.63  E-value=3.8e-09  Score=77.62  Aligned_cols=56  Identities=18%  Similarity=0.201  Sum_probs=39.3

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHH-H----HHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEV-F----AREHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|+++|+||+|+.+.  ...++... +    +...+.+++++||++|.|++++|..+++.+.+
T Consensus       102 ~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          102 AVLLVFANKQDLPNA--MNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             CEEEEEEECTTSTTC--CCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             CeEEEEEECcCCcCC--CCHHHHHHHhCcccccCccEEEEEcccCCCcCHHHHHHHHHHHHhh
Confidence            589999999999653  23222221 1    11124469999999999999999999987743

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.63  E-value=1.4e-07  Score=71.76  Aligned_cols=60  Identities=52%  Similarity=0.721  Sum_probs=55.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      .|+++|+||+||.+.+.+..+++..++...++.++++||+++.|++++|..+.+.+.+..
T Consensus       111 ~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l~~~l~~~~~~~~  170 (199)
T 2f9l_A          111 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV  170 (199)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            479999999999888888999999999999999999999999999999999999987654

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=98.61  E-value=3.3e-09  Score=86.62  Aligned_cols=57  Identities=21%  Similarity=0.208  Sum_probs=49.4

Q ss_pred             CeEEEEeecCCCccC-------CCCCHHHHHHHHHH----hCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDAR-------REVKKEEGEVFARE----HGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~-------~~v~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|++|||||+||..+       |+|..++++.+|+.    +++.||||||++ .||.++|..+++.+..
T Consensus       107 ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~  174 (331)
T 3r7w_B          107 INIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIP  174 (331)
T ss_dssp             CEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSST
T ss_pred             CcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHh
Confidence            589999999999753       56888889999986    678999999998 6999999999988753

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.60  E-value=8.1e-09  Score=76.33  Aligned_cols=56  Identities=18%  Similarity=0.246  Sum_probs=41.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHH-H----HHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGE-V----FAREHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~-~----~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|+++|+||+|+.+.+  ..++.. .    ++...+.+++++||++|.|++++|..+++.+.+
T Consensus       109 ~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          109 AILVVFANKQDMEQAM--TSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             CEEEEEEECTTSTTCC--CHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CEEEEEEECCCCcCCC--CHHHHHHHhCchhccCCceEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence            5899999999997543  222221 1    122335579999999999999999999988753

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.60  E-value=1.5e-08  Score=76.21  Aligned_cols=58  Identities=12%  Similarity=0.201  Sum_probs=45.5

Q ss_pred             CeEEEEeecCCCccCCCCC---HHHHHHHHHHhCCc----EEEecccCCC-cHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVK---KEEGEVFAREHGLV----FMETSAKLAT-NVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~---~~~~~~~~~~~~~~----~~~~Sa~~~~-~i~~~f~~l~~~~~~   58 (245)
                      +|++|||||+|+.+.+.+.   .+.+..+++.++++    ++++||++|. +++++|..+.+.+.+
T Consensus       113 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~  178 (184)
T 2zej_A          113 SPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVNATEESDALAKLRKTIINESLN  178 (184)
T ss_dssp             CEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHC
T ss_pred             CcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEecccCchhHHHHHHHHHHHHhc
Confidence            5899999999997655433   34456677667776    9999999997 999999999887753

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.57  E-value=9.7e-10  Score=85.54  Aligned_cols=58  Identities=17%  Similarity=0.064  Sum_probs=46.2

Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHc--CCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREH--GLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      .|.++|+||+|+...+....++...++...  +++++++||++|.|++++|+++.+.+..
T Consensus       165 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~  224 (226)
T 2hf9_A          165 TADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE  224 (226)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             cCCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence            688999999998654334566666666543  5789999999999999999999887753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=98.56  E-value=4.2e-07  Score=75.43  Aligned_cols=103  Identities=11%  Similarity=0.017  Sum_probs=62.8

Q ss_pred             EEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHH
Q psy13390        114 IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEG  193 (245)
Q Consensus       114 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~  193 (245)
                      +.+.|+||+|....   .......+|++++|+|++.+...+.+..   .+     -..|.++|+||+|+...... ....
T Consensus       167 ~~~iliDT~Gi~~~---~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i-----l~~~~ivVlNK~Dl~~~~~~-~~~~  234 (349)
T 2www_A          167 YDIILIETVGVGQS---EFAVADMVDMFVLLLPPAGGDELQGIKR---GI-----IEMADLVAVTKSDGDLIVPA-RRIQ  234 (349)
T ss_dssp             CSEEEEECCCC--C---HHHHHTTCSEEEEEECCC--------------------CCSCSEEEECCCSGGGHHHH-HHHH
T ss_pred             CCEEEEECCCcchh---hhhHHhhCCEEEEEEcCCcchhHHHhHH---HH-----HhcCCEEEEeeecCCCchhH-HHHH
Confidence            45899999996421   2345679999999999987543322211   11     13588999999998532110 0111


Q ss_pred             HHHHH----------HcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        194 EVFAR----------EHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       194 ~~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      ..+..          .+..+++.+||++|.|++++++++.+.+..
T Consensus       235 ~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~  279 (349)
T 2www_A          235 AEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL  279 (349)
T ss_dssp             HHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            11211          124568999999999999999999887644

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=98.54  E-value=5.5e-08  Score=79.11  Aligned_cols=51  Identities=20%  Similarity=0.157  Sum_probs=42.9

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhC--CcEEEecccCCCcHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTA   53 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~   53 (245)
                      +|++||+||+||.+.+.+  +++..++..++  ..++++||++|.||+++|..+.
T Consensus       116 ~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~  168 (301)
T 1u0l_A          116 LETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLK  168 (301)
T ss_dssp             CEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHS
T ss_pred             CCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhc
Confidence            589999999999765443  55778888887  8999999999999999997764

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.53  E-value=1.6e-08  Score=76.25  Aligned_cols=57  Identities=16%  Similarity=0.214  Sum_probs=41.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHH-H----HHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEV-F----AREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~-~----~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|+++|+||+|+.+..  ..++... +    +...+.+++++||++|.|++++|+.+++.+.+.
T Consensus       124 ~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          124 SLLLIFANKQDLPDAA--SEAEIAEQLGVSSIMNRTWTIVKSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             CEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             CeEEEEEECCCCcCCC--CHHHHHHHhChhhccCCceEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence            5899999999996542  2222221 1    122345799999999999999999999988543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.51  E-value=1.6e-08  Score=75.95  Aligned_cols=56  Identities=18%  Similarity=0.143  Sum_probs=39.9

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHH-----HHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFA-----REHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|+++||||+|+.+.+  ..++.....     ...+..++++||++|.||+++|..+++.+.+
T Consensus       118 ~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (181)
T 1fzq_A          118 VPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNVNA  178 (181)
T ss_dssp             CCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC--
T ss_pred             CCEEEEEECcCcccCC--CHHHHHHHhCchhccCCceEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence            5899999999997643  233322211     1224569999999999999999999987643

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=98.48  E-value=5.3e-08  Score=80.82  Aligned_cols=59  Identities=24%  Similarity=0.199  Sum_probs=49.6

Q ss_pred             CeEEEEeecCCCccCC---------------CCCHHHHHHHHHH-----------hCCcEEEecccCCCcHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARR---------------EVKKEEGEVFARE-----------HGLVFMETSAKLATNVEEAFIDTAK   54 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~---------------~v~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~i~~~f~~l~~   54 (245)
                      +|++|||||+||..++               .++.+++..++..           .++.+++|||+++.||.++|..+++
T Consensus       261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~  340 (353)
T 1cip_A          261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD  340 (353)
T ss_dssp             SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence            5899999999995332               4788999998873           4567999999999999999999999


Q ss_pred             HHHHH
Q psy13390         55 EIYEK   59 (245)
Q Consensus        55 ~~~~~   59 (245)
                      .+.+.
T Consensus       341 ~i~~~  345 (353)
T 1cip_A          341 VIIKN  345 (353)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=98.47  E-value=7.6e-08  Score=76.54  Aligned_cols=55  Identities=15%  Similarity=0.091  Sum_probs=48.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|+++|+||+|+...+.+.. ++..+++.+|++++++||++|.|++++|..+++.+
T Consensus       111 ~pvilv~NK~Dl~~~~~i~~-~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~~  165 (258)
T 3a1s_A          111 KKVILAMTAIDEAKKTGMKI-DRYELQKHLGIPVVFTSSVTGEGLEELKEKIVEYA  165 (258)
T ss_dssp             CCEEEEEECHHHHHHTTCCB-CHHHHHHHHCSCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CCEEEEEECcCCCCccchHH-HHHHHHHHcCCCEEEEEeeCCcCHHHHHHHHHHHh
Confidence            58999999999977666654 47789999999999999999999999999998865

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.47  E-value=1.7e-07  Score=70.67  Aligned_cols=55  Identities=16%  Similarity=0.144  Sum_probs=43.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHH-----HhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAR-----EHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++|+||+|+.+  .+..++...+..     ..+..++++||++|.||+++|+.+++.+.
T Consensus       127 ~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~  186 (190)
T 2h57_A          127 IPILFFANKMDLRD--AVTSVKVSQLLCLENIKDKPWHICASDAIKGEGLQEGVDWLQDQIQ  186 (190)
T ss_dssp             CCEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC-
T ss_pred             CeEEEEEeCcCccc--CCCHHHHHHHhChhhccCCceEEEEccCCCCcCHHHHHHHHHHHHH
Confidence            48999999999964  345666665553     13567999999999999999999998764

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=98.46  E-value=6.8e-08  Score=77.40  Aligned_cols=54  Identities=19%  Similarity=0.152  Sum_probs=46.8

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE   55 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~   55 (245)
                      +|+++|+||+|+...+.+. .++..++..++++++++||++|.||+++|..+++.
T Consensus       108 ~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  161 (272)
T 3b1v_A          108 IPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVDQVVKKAAHT  161 (272)
T ss_dssp             SCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHHHHHHHHHHS
T ss_pred             CCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHHHHHHHHHHH
Confidence            5899999999997666655 45678999999999999999999999999998764

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=98.46  E-value=1.2e-06  Score=72.63  Aligned_cols=42  Identities=17%  Similarity=0.119  Sum_probs=30.9

Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCC
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL  211 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  211 (245)
                      .+|+++++|+.|..-......+..+.++...+.+++.+||+.
T Consensus       199 ~KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             CCcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence            589999999998642111234566777877889999999764

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.45  E-value=3.4e-08  Score=79.58  Aligned_cols=117  Identities=11%  Similarity=0.110  Sum_probs=59.0

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHH---HhCCcEEEecccCCCcHHHHHHHHHHHHHHHhccCcc-ccccccCCccc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAR---EHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVF-DITNEANGIKI   76 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~~~~-~~~~~~~~~~~   76 (245)
                      .|+++|.||+||.+     .+..+.|..   ..+.+++.+||+++.|+++++..+.+.+......... ........+.+
T Consensus        51 kp~ilVlNK~DL~~-----~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~~~~~~~~v~~  125 (282)
T 1puj_A           51 KPRIMLLNKADKAD-----AAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALI  125 (282)
T ss_dssp             SCEEEEEECGGGSC-----HHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEE
T ss_pred             CCEEEEEECcccCC-----HHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCCCceEEE
Confidence            37899999999864     233333433   3467889999999999999998887766543210000 00011111222


Q ss_pred             CCCCCCCC-----CCCCCCCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChh
Q psy13390         77 GPQHSPNN-----PSLPSGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQE  125 (245)
Q Consensus        77 ~~~~~~~~-----~~l~~~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~  125 (245)
                      .+.++..+     ...+.......++.|++.....+....   .+.+|||||..
T Consensus       126 vG~~nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~  176 (282)
T 1puj_A          126 IGIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGIL  176 (282)
T ss_dssp             EESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCCC
T ss_pred             EecCCCchHHHHHHHhcCceeecCCCCCeeeeeEEEEeCC---CEEEEECcCcC
Confidence            22221111     112333345556666665554444433   48999999974

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.44  E-value=2.1e-07  Score=69.96  Aligned_cols=55  Identities=13%  Similarity=0.140  Sum_probs=42.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHH-----HhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAR-----EHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++|+||+|+.+  ....++......     ..+..++++||++|.|++++|+.+++.+.
T Consensus       118 ~piilv~NK~Dl~~--~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  177 (187)
T 1zj6_A          118 AGLLIFANKQDVKE--CMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK  177 (187)
T ss_dssp             CEEEEEEECTTSTT--CCCHHHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             CeEEEEEECCCCcC--CCCHHHHHHHhChhhhcCCCcEEEEccCCCCcCHHHHHHHHHHHHH
Confidence            58999999999964  334555443332     23557999999999999999999998774

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=98.43  E-value=5.5e-08  Score=87.74  Aligned_cols=108  Identities=14%  Similarity=0.085  Sum_probs=69.9

Q ss_pred             EEEEEcCCChhh-------------hhhhhHhhc-cCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q psy13390        115 KLQIWDTAGQEA-------------FRSITRSYY-RGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKS  180 (245)
Q Consensus       115 ~~~l~Dt~G~~~-------------~~~~~~~~~-~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~  180 (245)
                      .+.|+||||...             +..+...|+ ..+|++++|+|++.+...++...++..+.   ..+.|+++|.||+
T Consensus       151 qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~---~~g~pvIlVlNKi  227 (772)
T 3zvr_A          151 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVD---PQGQRTIGVITKL  227 (772)
T ss_dssp             SEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHC---TTCSSEEEEEECT
T ss_pred             ceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHH---hcCCCEEEEEeCc
Confidence            589999999643             223344454 58899999999987544344323333333   3468999999999


Q ss_pred             CCccCcccCHHHHHH-H-HHHcC-CcEEEeccCCCCCHHHHHHHHHHH
Q psy13390        181 DLDARREVKKEEGEV-F-AREHG-LVFMETSAKLATNVEEAFIDTAKE  225 (245)
Q Consensus       181 Dl~~~~~~~~~~~~~-~-~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~  225 (245)
                      |+............. . ....+ .+++.+||++|.|++++++.+.+.
T Consensus       228 Dlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          228 DLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             TSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             ccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            987544332211110 0 00012 357789999999999999988763

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.42  E-value=3.5e-07  Score=68.23  Aligned_cols=57  Identities=16%  Similarity=0.111  Sum_probs=42.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHH-----hCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFARE-----HGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|+++|+||+|+.+.  ...++.......     .+.+++++||++|.|++++|+.+++.+.++
T Consensus       120 ~piilv~nK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          120 AALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             CEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence            589999999999653  344444333221     234699999999999999999999988654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.42  E-value=2.5e-07  Score=71.68  Aligned_cols=56  Identities=16%  Similarity=0.049  Sum_probs=47.2

Q ss_pred             eEEEEeecCCCccCCCCCHHHHHHHHHHh--CCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          2 VIMLIGNKSDLDARREVKKEEGEVFAREH--GLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      |.++|+||+|+.+.+.+..+++..++..+  +.+++++||++|.|++++|..+.+.+.
T Consensus       166 ~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~  223 (226)
T 2hf9_A          166 ADLIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVK  223 (226)
T ss_dssp             CSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCEEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHH
Confidence            56999999999765556778888887765  568999999999999999999988764

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.41  E-value=3.3e-07  Score=68.70  Aligned_cols=56  Identities=14%  Similarity=0.071  Sum_probs=41.9

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHH-----HhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAR-----EHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~-----~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|+++|+||+|+.+.+  ..++......     ..+.+++++||++|.|++++|..+++.+.+
T Consensus       120 ~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~  180 (186)
T 1ksh_A          120 ATLLIFANKQDLPGAL--SCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  180 (186)
T ss_dssp             CEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CcEEEEEeCccCCCCC--CHHHHHHHhChhhccCCceEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            5899999999997543  3333322211     235579999999999999999999998754

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=98.38  E-value=7.6e-08  Score=78.82  Aligned_cols=59  Identities=19%  Similarity=0.184  Sum_probs=49.7

Q ss_pred             CeEEEEeecCCCccCC----------------CCCHHHHHHHH----------HHhCCcEEEecccCCCcHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARR----------------EVKKEEGEVFA----------REHGLVFMETSAKLATNVEEAFIDTAK   54 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~----------------~v~~~~~~~~~----------~~~~~~~~~~Sa~~~~~i~~~f~~l~~   54 (245)
                      +|++|+|||+||..++                .++.++|..+.          ...++.+++|||+++.||+++|..+++
T Consensus       235 ~~iiL~~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~  314 (327)
T 3ohm_A          235 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD  314 (327)
T ss_dssp             CEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ceEEEEEECchhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHH
Confidence            5899999999997544                57889998884          345567899999999999999999999


Q ss_pred             HHHHH
Q psy13390         55 EIYEK   59 (245)
Q Consensus        55 ~~~~~   59 (245)
                      .+.+.
T Consensus       315 ~Il~~  319 (327)
T 3ohm_A          315 TILQL  319 (327)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            99765

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.38  E-value=2.5e-08  Score=75.25  Aligned_cols=55  Identities=16%  Similarity=0.241  Sum_probs=39.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHH-HH----HHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEV-FA----REHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++|+||+|+...  ...++... +.    ...+..++++||++|.||+++|..+++.+.
T Consensus       125 ~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~  184 (188)
T 1zd9_A          125 IPVLVLGNKRDLPGA--LDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHSK  184 (188)
T ss_dssp             CCEEEEEECTTSTTC--CCHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTCC
T ss_pred             CCEEEEEECCCCccC--CCHHHHHHHhChhhhccCCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            589999999999653  23322211 11    122456899999999999999999988664

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=98.38  E-value=2e-07  Score=81.77  Aligned_cols=58  Identities=14%  Similarity=0.084  Sum_probs=47.9

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|+++||||+|+...+.+..+++..++...+.+++++||++|.||+++|..+++.+.+
T Consensus       151 ~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          151 SPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             CCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred             CCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHHHHHHHHHHhc
Confidence            4899999999998888889999999998999999999999999999999999887643

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.38  E-value=6.5e-07  Score=66.39  Aligned_cols=56  Identities=18%  Similarity=0.065  Sum_probs=41.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHh-------C--CcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREH-------G--LVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~-------~--~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|+++|+||+|+...   ..++........       +  .+++++||++|.|++++|..+++.+...
T Consensus       108 ~p~ilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  172 (178)
T 2lkc_A          108 VPIIVAINKMDKPEA---NPDRVMQELMEYNLVPEEWGGDTIFCKLSAKTKEGLDHLLEMILLVSEME  172 (178)
T ss_dssp             CCEEEEEETTTSSCS---CHHHHHHHHTTTTCCBTTTTSSEEEEECCSSSSHHHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECccCCcC---CHHHHHHHHHhcCcChhHcCCcccEEEEecCCCCCHHHHHHHHHHhhhhh
Confidence            589999999998653   233333322222       2  4799999999999999999999887543

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=98.35  E-value=2.4e-07  Score=81.42  Aligned_cols=68  Identities=21%  Similarity=0.291  Sum_probs=52.3

Q ss_pred             EEEEEcCCChhh-----------hhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390        115 KLQIWDTAGQEA-----------FRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD  183 (245)
Q Consensus       115 ~~~l~Dt~G~~~-----------~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  183 (245)
                      .+.||||+|...           +...+..+++.+|++++|+|+++.........|+..+..   .+.|+++|+||+|+.
T Consensus       155 ~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~---~~~pvilVlNK~Dl~  231 (550)
T 2qpt_A          155 SISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRG---HEDKIRVVLNKADMV  231 (550)
T ss_dssp             HCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTT---CGGGEEEEEECGGGS
T ss_pred             CEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHh---cCCCEEEEEECCCcc
Confidence            589999999864           556777789999999999999875444455566655543   347999999999986


Q ss_pred             cC
Q psy13390        184 AR  185 (245)
Q Consensus       184 ~~  185 (245)
                      ..
T Consensus       232 ~~  233 (550)
T 2qpt_A          232 ET  233 (550)
T ss_dssp             CH
T ss_pred             CH
Confidence            43

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.31  E-value=6.9e-07  Score=67.16  Aligned_cols=42  Identities=36%  Similarity=0.511  Sum_probs=39.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCC
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA   42 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~   42 (245)
                      +|+++|+||+|+.+.+.+..+++..++..+++.++++||++|
T Consensus       128 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  169 (189)
T 1z06_A          128 IPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP  169 (189)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSG
T ss_pred             CCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcC
Confidence            489999999999888889999999999999999999999999

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.31  E-value=3.1e-07  Score=74.66  Aligned_cols=53  Identities=25%  Similarity=0.191  Sum_probs=42.4

Q ss_pred             CeEEEEeecCCCccCCCCC-HHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVK-KEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA   53 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~-~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~   53 (245)
                      +|++||+||+||.+++.+. .++...++...+.+++++||++|.|++++|..+.
T Consensus       111 ~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          111 VEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             CEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTT
T ss_pred             CCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhcc
Confidence            5899999999997544333 4555667777889999999999999999997664

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=98.30  E-value=2.8e-07  Score=76.69  Aligned_cols=60  Identities=23%  Similarity=0.203  Sum_probs=48.0

Q ss_pred             CeEEEEeecCCCccCC----------------CCCHHHHHHHHH-----------HhCCcEEEecccCCCcHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARR----------------EVKKEEGEVFAR-----------EHGLVFMETSAKLATNVEEAFIDTA   53 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~----------------~v~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~~f~~l~   53 (245)
                      +|++|||||+||..++                .++.+++..++.           ..++.+++|||+++.||+++|..++
T Consensus       269 ~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~  348 (362)
T 1zcb_A          269 VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVK  348 (362)
T ss_dssp             SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHH
Confidence            5899999999986432                377888888762           3456789999999999999999999


Q ss_pred             HHHHHHh
Q psy13390         54 KEIYEKI   60 (245)
Q Consensus        54 ~~~~~~~   60 (245)
                      +.+.+..
T Consensus       349 ~~i~~~~  355 (362)
T 1zcb_A          349 DTILHDN  355 (362)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9887653

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=98.29  E-value=3.6e-07  Score=75.80  Aligned_cols=59  Identities=20%  Similarity=0.205  Sum_probs=44.8

Q ss_pred             CeEEEEeecCCCccCCC--C-------------------CHHHHHHHHHH-h---------------CCcEEEecccCCC
Q psy13390          1 MVIMLIGNKSDLDARRE--V-------------------KKEEGEVFARE-H---------------GLVFMETSAKLAT   43 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~--v-------------------~~~~~~~~~~~-~---------------~~~~~~~Sa~~~~   43 (245)
                      +|++|||||+||..++.  +                   +.+++..++.. +               ...+++|||+++.
T Consensus       251 ~piiLvgNK~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~  330 (354)
T 2xtz_A          251 TSFMLFLNKFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQK  330 (354)
T ss_dssp             CEEEEEEECHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHH
T ss_pred             CeEEEEEECcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecch
Confidence            58999999999864322  2                   25677777543 1               2246899999999


Q ss_pred             cHHHHHHHHHHHHHHH
Q psy13390         44 NVEEAFIDTAKEIYEK   59 (245)
Q Consensus        44 ~i~~~f~~l~~~~~~~   59 (245)
                      ||+++|..+++.+.+.
T Consensus       331 nV~~vF~~v~~~I~~~  346 (354)
T 2xtz_A          331 LVKKTFKLVDETLRRR  346 (354)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHH
Confidence            9999999999988654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=98.28  E-value=1.1e-06  Score=71.73  Aligned_cols=57  Identities=16%  Similarity=0.057  Sum_probs=48.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhC--CcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++|+||+|+...+....+....++..++  ..++++||++|.|++++|..+++.+.
T Consensus       123 ~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          123 KPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             CCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHHHHHHHHHHhCc
Confidence            5899999999997445556677778888876  67999999999999999999988763

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.27  E-value=1.7e-07  Score=77.13  Aligned_cols=56  Identities=18%  Similarity=0.191  Sum_probs=40.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHH-HH----HHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEV-FA----REHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~-~~----~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|++|||||+|+.+..  ..++... +.    ...+.+++++||++|.||+++|..+++.+.+
T Consensus       267 ~piilV~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          267 AVLLVFANKQDLPNAM--NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             CEEEEEEECTTSTTCC--CHHHHHHHHTCTTCCSSCEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             CeEEEEEECccCCccc--CHHHHHHHhchhhhhcCCCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            5899999999997543  2222221 11    1123469999999999999999999987743

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=98.27  E-value=1.6e-06  Score=71.53  Aligned_cols=103  Identities=8%  Similarity=0.010  Sum_probs=63.0

Q ss_pred             EEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHH
Q psy13390        114 IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEG  193 (245)
Q Consensus       114 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~  193 (245)
                      +.+.|+||+|...-.   ......+|.+++++|...+...+.+...+   .     ..|.+++.||+|+...........
T Consensus       148 ~~~iliDT~Gi~~~~---~~v~~~~d~vl~v~d~~~~~~~~~i~~~i---~-----~~~~ivvlNK~Dl~~~~~~s~~~~  216 (337)
T 2qm8_A          148 FDVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKKGI---F-----ELADMIAVNKADDGDGERRASAAA  216 (337)
T ss_dssp             CCEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCTTH---H-----HHCSEEEEECCSTTCCHHHHHHHH
T ss_pred             CCEEEEECCCCCcch---hhHHhhCCEEEEEEcCCCcccHHHHHHHH---h-----ccccEEEEEchhccCchhHHHHHH
Confidence            468999999975422   22457899999999986543222111111   1     135577779999743221111122


Q ss_pred             HHHHHH----------cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        194 EVFARE----------HGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       194 ~~~~~~----------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ..+...          +..+++.+||+++.|++++++.+.+...
T Consensus       217 ~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          217 SEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             HHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            222221          1346899999999999999999988764

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=98.27  E-value=2.7e-06  Score=70.92  Aligned_cols=52  Identities=19%  Similarity=0.165  Sum_probs=37.9

Q ss_pred             CCeEEEEEeCCCCc--cC-cccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLD--AR-REVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID  221 (245)
Q Consensus       170 ~~piivv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~  221 (245)
                      .+|+++++||.|..  .. +....+..+.++...+.+++++||+++.++.+++..
T Consensus       201 ~KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~  255 (368)
T 2dby_A          201 AKPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGE  255 (368)
T ss_dssp             GSCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHH
T ss_pred             cCCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchH
Confidence            47999999999842  21 122346677788878899999999987777766544

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.24  E-value=4.9e-07  Score=73.41  Aligned_cols=92  Identities=15%  Similarity=0.113  Sum_probs=62.6

Q ss_pred             hhhhhHhhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCccc--CHHHHHHHHHHcCCc
Q psy13390        127 FRSITRSYYRGAAGALLVYDITRRE-TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREV--KKEEGEVFAREHGLV  203 (245)
Q Consensus       127 ~~~~~~~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~  203 (245)
                      .+.+.+..+.++|.+++|+|+.+|. +...+.+++.....   .++|.+||.||+|+......  ..+.........|++
T Consensus        76 ~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i~r~L~~~~~---~~~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~  152 (307)
T 1t9h_A           76 TNELIRPPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYD  152 (307)
T ss_dssp             SCEETTTTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCC
T ss_pred             hhhhhHHHHHhCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---CCCCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCe
Confidence            3445566899999999999998765 34444554433322   46899999999999653210  012233344456889


Q ss_pred             EEEeccCCCCCHHHHHHH
Q psy13390        204 FMETSAKLATNVEEAFID  221 (245)
Q Consensus       204 ~~~~Sa~~~~~i~~~~~~  221 (245)
                      ++.+||+++.|+++++..
T Consensus       153 v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          153 VYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             EEECCHHHHTTCTTTGGG
T ss_pred             EEEEecCCCCCHHHHHhh
Confidence            999999999998876643

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=98.23  E-value=1.1e-06  Score=73.26  Aligned_cols=57  Identities=21%  Similarity=0.238  Sum_probs=47.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      .|+++|+||+|+...+.  .+++..++...+.+++++||++|.|++++|..+++.+...
T Consensus       281 ~piilV~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~iSA~~g~gi~~l~~~i~~~l~~~  337 (357)
T 2e87_A          281 LPFLVVINKIDVADEEN--IKRLEKFVKEKGLNPIKISALKGTGIDLVKEEIIKTLRPL  337 (357)
T ss_dssp             SCEEEEECCTTTCCHHH--HHHHHHHHHHTTCCCEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECcccCChHH--HHHHHHHHHhcCCCeEEEeCCCCcCHHHHHHHHHHHHHHH
Confidence            48999999999865433  2456677778888999999999999999999999888543

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=98.22  E-value=5.4e-07  Score=73.48  Aligned_cols=55  Identities=22%  Similarity=0.204  Sum_probs=47.8

Q ss_pred             CeEEEEeecCCCcc--CCC----CCHHHHHHHHHHhC---CcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDA--RRE----VKKEEGEVFAREHG---LVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~--~~~----v~~~~~~~~~~~~~---~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|+++||||+|+..  .+.    +..+++..+++.+|   ++++++||++ .++.++|..+++.+
T Consensus       116 ~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~~~tSa~~-~~i~e~~~~iv~~l  179 (307)
T 3r7w_A          116 AKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIGFPTSIWD-ESLYKAWSQIVCSL  179 (307)
T ss_dssp             CEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEEEECCTTS-SHHHHHHHHHHHTT
T ss_pred             CeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEEEEeeecC-ChHHHHHHHHHHHH
Confidence            58999999999976  454    66788899999987   6899999999 99999999998765

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.22  E-value=6.4e-08  Score=77.09  Aligned_cols=105  Identities=14%  Similarity=0.113  Sum_probs=52.9

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhccCccccccccCCcccCCCC
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFDITNEANGIKIGPQH   80 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (245)
                      .|.++|.||+||.+...  .+....+.+..|.++ .+||+++.|+++++..+...+               ..+.+.+.+
T Consensus        47 k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~~~---------------~~v~~vG~~  108 (262)
T 3cnl_A           47 KETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFDRL---------------ARVLIVGVP  108 (262)
T ss_dssp             SEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCCTT---------------CEEEEEEST
T ss_pred             CCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHHhh---------------hheEEeCCC
Confidence            47899999999864211  112223344457778 899999999998876654322               011111111


Q ss_pred             CCCC-----CCCCCCCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhh
Q psy13390         81 SPNN-----PSLPSGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEA  126 (245)
Q Consensus        81 ~~~~-----~~l~~~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~  126 (245)
                      +..+     ...+.....+.++.|.+.....+....   .+.+|||||...
T Consensus       109 ~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~~~~~---~~~l~DtpG~~~  156 (262)
T 3cnl_A          109 NTGKSTIINKLKGKRASSVGAQPGITKGIQWFSLEN---GVKILDTPGILY  156 (262)
T ss_dssp             TSSHHHHHHHHHTTCC----------CCSCEEECTT---SCEEESSCEECC
T ss_pred             CCCHHHHHHHHhcccccccCCCCCCccceEEEEeCC---CEEEEECCCccc
Confidence            1111     111222233455666666544444332   489999999764

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.22  E-value=7.7e-07  Score=70.82  Aligned_cols=84  Identities=13%  Similarity=0.026  Sum_probs=59.2

Q ss_pred             hhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEecc
Q psy13390        130 ITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSA  209 (245)
Q Consensus       130 ~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa  209 (245)
                      .....++++|+++.|+|+.++.+.....  +. +   .  ++|.++|.||+|+.....  .+....+....++++ .+||
T Consensus        14 ~~~~~l~~~D~vl~VvDar~P~~~~~~~--l~-l---l--~k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~iSa   82 (262)
T 3cnl_A           14 QIKDLLRLVNTVVEVRDARAPFATSAYG--VD-F---S--RKETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-ITTH   82 (262)
T ss_dssp             HHHHHHTTCSEEEEEEETTSTTTTSCTT--SC-C---T--TSEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-EECC
T ss_pred             HHHHHHhhCCEEEEEeeCCCCCcCcChH--HH-h---c--CCCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-EEEC
Confidence            4456889999999999999886654211  11 1   1  589999999999964211  122233444567888 9999


Q ss_pred             CCCCCHHHHHHHHHH
Q psy13390        210 KLATNVEEAFIDTAK  224 (245)
Q Consensus       210 ~~~~~i~~~~~~i~~  224 (245)
                      ++|.|++++++.+..
T Consensus        83 ~~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           83 KGEPRKVLLKKLSFD   97 (262)
T ss_dssp             TTSCHHHHHHHHCCC
T ss_pred             CCCcCHHHHHHHHHH
Confidence            999999998877643

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=98.19  E-value=1.1e-06  Score=67.79  Aligned_cols=59  Identities=17%  Similarity=0.015  Sum_probs=40.8

Q ss_pred             CeEEEEeecCCCccCCCCCH--HHHHH-HHHH------hCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKK--EEGEV-FARE------HGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~--~~~~~-~~~~------~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|+++|+||+|+...+.+..  ++... +...      .+.+++++||++|.||+++|..+.+.+...
T Consensus       145 ~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~~  212 (223)
T 4dhe_A          145 KPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRPA  212 (223)
T ss_dssp             CCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC--
T ss_pred             CCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCcc
Confidence            58999999999865332211  11122 2222      456799999999999999999999887543

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.19  E-value=6.1e-07  Score=71.78  Aligned_cols=55  Identities=29%  Similarity=0.226  Sum_probs=47.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|+++|+||+|+.+.+.+... ...++..++++++++||++|.|++++|..+.+.+
T Consensus       110 ~p~ilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~~~~~Sa~~g~gi~~l~~~i~~~~  164 (271)
T 3k53_A          110 KNIILVLNKFDLLKKKGAKID-IKKMRKELGVPVIPTNAKKGEGVEELKRMIALMA  164 (271)
T ss_dssp             CSEEEEEECHHHHHHHTCCCC-HHHHHHHHSSCEEECBGGGTBTHHHHHHHHHHHH
T ss_pred             CCEEEEEEChhcCcccccHHH-HHHHHHHcCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence            589999999998765544443 6778889999999999999999999999998876

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.15  E-value=3.2e-06  Score=62.99  Aligned_cols=42  Identities=33%  Similarity=0.521  Sum_probs=38.8

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCC
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA   42 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~   42 (245)
                      +|+++|+||+|+.+.+.+..+++..++..++++++++||++.
T Consensus       124 ~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~  165 (183)
T 3kkq_A          124 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDP  165 (183)
T ss_dssp             CCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSS
T ss_pred             CcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCC
Confidence            589999999999988899999999999999999999999753

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=98.15  E-value=1.6e-06  Score=66.88  Aligned_cols=58  Identities=16%  Similarity=0.012  Sum_probs=46.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhC--CcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      .|+++|+||+|+...+....++...++...+  .+++++||++|.|++++|..+.+.+..
T Consensus       155 ~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~  214 (221)
T 2wsm_A          155 VADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGKGFEEWIDFLRGILNV  214 (221)
T ss_dssp             TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTBTHHHHHHHHHHHHC-
T ss_pred             cCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHH
Confidence            4789999999987544456777777776653  679999999999999999999987744

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=98.14  E-value=6.2e-07  Score=71.15  Aligned_cols=54  Identities=11%  Similarity=0.071  Sum_probs=44.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE   55 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~   55 (245)
                      +|+++|+||+|+...+.+... ...+++.++++++++||++|.|++++|..+.+.
T Consensus       111 ~pvilv~NK~Dl~~~~~~~~~-~~~l~~~lg~~vi~~SA~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          111 KPVVVALNMMDIAEHRGISID-TEKLESLLGCSVIPIQAHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             SCEEEEEECHHHHHHTTCEEC-HHHHHHHHCSCEEECBGGGTBSHHHHHHHHHTC
T ss_pred             CCEEEEEEChhcCCcCCcHHH-HHHHHHHcCCCEEEEECCCCCCHHHHHHHHHhh
Confidence            589999999998765544332 455888899999999999999999999988663

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=98.11  E-value=4.9e-07  Score=76.73  Aligned_cols=55  Identities=11%  Similarity=0.073  Sum_probs=47.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++|+||+|+...+..  +.+..++..++.+++++||++|.|++++|..+++.+.
T Consensus       141 ~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g~~v~~vSAktg~gI~eL~~~L~~~l~  195 (423)
T 3qq5_A          141 IPFVVVVNKIDVLGEKAE--ELKGLYESRYEAKVLLVSALQKKGFDDIGKTISEILP  195 (423)
T ss_dssp             CCEEEECCCCTTTTCCCT--HHHHHSSCCTTCCCCCCSSCCTTSTTTHHHHHHHHSC
T ss_pred             CCEEEEEeCcCCCCccHH--HHHHHHHHHcCCCEEEEECCCCCCHHHHHHHHHHhhh
Confidence            589999999999876554  5667777778899999999999999999999998874

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=98.09  E-value=3.3e-06  Score=63.43  Aligned_cols=56  Identities=34%  Similarity=0.453  Sum_probs=44.8

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|++|||||+|+...+.++.+++..++..+++.++++||+.. +  +-...+...+.+.
T Consensus       128 ~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~-g--~gv~~lf~~l~~~  183 (187)
T 3c5c_A          128 IPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLD-F--EHVQHVFHEAVRE  183 (187)
T ss_dssp             CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSC-S--HHHHHHHHHHHHH
T ss_pred             CCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCc-c--ccHHHHHHHHHHH
Confidence            589999999999888889999999999999999999999732 2  2345555555443

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=98.09  E-value=5.5e-07  Score=72.21  Aligned_cols=55  Identities=9%  Similarity=0.138  Sum_probs=44.8

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|+++|+||+|+.+.+.+.. +...+++.++++++++||++|.|++++|..+.+.+
T Consensus       113 ~p~ivv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~i~~SA~~g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          113 IPCIVALNMLDIAEKQNIRI-EIDALSARLGCPVIPLVSTRGRGIEALKLAIDRYK  167 (274)
T ss_dssp             CCEEEEEECHHHHHHTTEEE-CHHHHHHHHTSCEEECCCGGGHHHHHHHHHHHTCC
T ss_pred             CCEEEEEECccchhhhhHHH-HHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence            58999999999876544332 24678888999999999999999999998886643

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=98.06  E-value=1.3e-06  Score=73.55  Aligned_cols=59  Identities=25%  Similarity=0.208  Sum_probs=44.1

Q ss_pred             CeEEEEeecCCCccCCC---C---------------------------CHHHHHHHH-----HH--------hCCcEEEe
Q psy13390          1 MVIMLIGNKSDLDARRE---V---------------------------KKEEGEVFA-----RE--------HGLVFMET   37 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~---v---------------------------~~~~~~~~~-----~~--------~~~~~~~~   37 (245)
                      +|++|||||+||...+.   +                           +.++|..|+     ..        .++.+++|
T Consensus       285 ~piiLvgNK~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~T  364 (402)
T 1azs_C          285 ISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFT  364 (402)
T ss_dssp             CCEEEEEECHHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEEC
T ss_pred             CeEEEEEEChhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEE
Confidence            58999999999865332   2                           145676664     22        13457899


Q ss_pred             cccCCCcHHHHHHHHHHHHHHH
Q psy13390         38 SAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus        38 Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      ||+++.||+++|..+.+.+.+.
T Consensus       365 SA~d~~nV~~vF~~v~~~I~~~  386 (402)
T 1azs_C          365 CAVDTENIRRVFNDCRDIIQRM  386 (402)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHH
T ss_pred             EeecCcCHHHHHHHHHHHHHHH
Confidence            9999999999999998888654

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=97.99  E-value=9.1e-06  Score=70.16  Aligned_cols=55  Identities=18%  Similarity=0.108  Sum_probs=43.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      .|+++|+||+|+...  +..++...++. .+.+++++||++|.|++++|..+.+.+..
T Consensus       351 ~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL~~~l~~~~~~  405 (482)
T 1xzp_A          351 KRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKLEESIYRETQE  405 (482)
T ss_dssp             SSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHHHHHHHHHTHH
T ss_pred             CCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence            489999999999643  45555554432 34689999999999999999999987653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=97.95  E-value=1e-05  Score=60.41  Aligned_cols=55  Identities=25%  Similarity=0.360  Sum_probs=42.1

Q ss_pred             CeEEEEeecCCCcc------------CCCCCHHHHHHHHHHhC-CcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDA------------RREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|++|||||+|+.+            .+.++.+++..+++.++ .+++++||+++.   +-...+...+.+
T Consensus       112 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~---~gi~~l~~~i~~  179 (184)
T 1m7b_A          112 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE---NSVRDIFHVATL  179 (184)
T ss_dssp             CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBH---HHHHHHHHHHHH
T ss_pred             CCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEEEEeeecCCC---cCHHHHHHHHHH
Confidence            58999999999975            26789999999999988 689999998532   234455555543

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.95  E-value=1.7e-06  Score=70.24  Aligned_cols=56  Identities=16%  Similarity=0.119  Sum_probs=38.7

Q ss_pred             CeEEEEeecCCCccCCCC--CHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREV--KKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +++++|+||.|+...+++  ..+++..++..+++.+|++||+++ |++++|..+++.+.
T Consensus       156 ~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~  213 (301)
T 2qnr_A          156 VNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLK  213 (301)
T ss_dssp             SCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHH
T ss_pred             CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhh
Confidence            478999999998754432  346778899999999999999999 99999999998885

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=97.93  E-value=9.4e-06  Score=69.98  Aligned_cols=54  Identities=15%  Similarity=0.090  Sum_probs=42.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      .|+++|+||+|+...+.+   +...++.....+++++||++|.||+++|..+.+.+.
T Consensus       344 ~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          344 AKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             SEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             CCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCHHHHHHHHHHHHh
Confidence            489999999999765543   223455543478999999999999999999988774

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=97.92  E-value=4.2e-06  Score=69.09  Aligned_cols=53  Identities=19%  Similarity=0.249  Sum_probs=43.8

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhC--CcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      .|+++|+||+|+...    .+....+++.+.  ..++++||+++.|++++|..+.+.+.
T Consensus       275 ~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~  329 (342)
T 1lnz_A          275 RPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE  329 (342)
T ss_dssp             SCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred             CCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCCCcCHHHHHHHHHHHHh
Confidence            478999999998642    245667777776  67999999999999999999998874

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.90  E-value=4.8e-05  Score=62.98  Aligned_cols=84  Identities=15%  Similarity=0.129  Sum_probs=55.2

Q ss_pred             hccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccC-HHHHHHHHHHcCCcEEEeccCC
Q psy13390        134 YYRGAAGALLVYDITRRE-TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVK-KEEGEVFAREHGLVFMETSAKL  211 (245)
Q Consensus       134 ~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~  211 (245)
                      ...++|.+++|.+. +|. +...+.+++.....   .++|.+||.||+|+....... .+.........|++++.+||++
T Consensus       127 i~anvD~v~iv~a~-~P~~~~~~i~r~L~~a~~---~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~  202 (358)
T 2rcn_A          127 IAANIDQIVIVSAI-LPELSLNIIDRYLVGCET---LQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHT  202 (358)
T ss_dssp             EEECCCEEEEEEES-TTTCCHHHHHHHHHHHHH---HTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTT
T ss_pred             HHhcCCEEEEEEeC-CCCCCHHHHHHHHHHHHh---cCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCC
Confidence            47899999988665 453 34445555543333   247889999999996432100 1112223345688999999999


Q ss_pred             CCCHHHHHHH
Q psy13390        212 ATNVEEAFID  221 (245)
Q Consensus       212 ~~~i~~~~~~  221 (245)
                      +.|++++...
T Consensus       203 ~~gl~~L~~~  212 (358)
T 2rcn_A          203 QDGLKPLEEA  212 (358)
T ss_dssp             TBTHHHHHHH
T ss_pred             CcCHHHHHHh
Confidence            9999988754

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.86  E-value=1.7e-06  Score=72.03  Aligned_cols=58  Identities=14%  Similarity=0.135  Sum_probs=38.2

Q ss_pred             CeEEEEeecCCCccCCCCCH--HHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKK--EEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|+++|+||+|+...+.+..  +++..++..++++++++||++|.+ ++.|..+++.+.+.
T Consensus       175 ~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~~  234 (361)
T 2qag_A          175 VNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKAS  234 (361)
T ss_dssp             SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHhc
Confidence            58999999999876555444  466677777889999999999999 99999999888654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=97.84  E-value=2e-05  Score=60.10  Aligned_cols=55  Identities=25%  Similarity=0.360  Sum_probs=42.2

Q ss_pred             CeEEEEeecCCCcc------------CCCCCHHHHHHHHHHhC-CcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDA------------RREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|++|||||+|+.+            .+.++.+++..+++.++ ..|+++||+++.   +-.+.+...+.+
T Consensus       133 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~---~gv~~lf~~l~~  200 (205)
T 1gwn_A          133 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSE---NSVRDIFHVATL  200 (205)
T ss_dssp             CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECCTTTCH---HHHHHHHHHHHH
T ss_pred             CCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEEEEeeeccCC---cCHHHHHHHHHH
Confidence            58999999999974            36789999999999988 689999998542   334555555543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=97.83  E-value=5.9e-06  Score=67.93  Aligned_cols=58  Identities=19%  Similarity=0.220  Sum_probs=45.8

Q ss_pred             CeEEEEeecCCCccCC---------------CCCHHHHHHHHHH-h--------------------------CCcEEEec
Q psy13390          1 MVIMLIGNKSDLDARR---------------EVKKEEGEVFARE-H--------------------------GLVFMETS   38 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~---------------~v~~~~~~~~~~~-~--------------------------~~~~~~~S   38 (245)
                      +|++|+|||+||..++               ..+.++|..|... +                          .+.+++||
T Consensus       229 ~piiLv~NK~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~Ts  308 (340)
T 4fid_A          229 AVKLIFLNKMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTN  308 (340)
T ss_dssp             SEEEEEEECHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEEC
T ss_pred             CeEEEEEECchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEE
Confidence            5899999999986421               1357777666543 3                          25689999


Q ss_pred             ccCCCcHHHHHHHHHHHHHH
Q psy13390         39 AKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus        39 a~~~~~i~~~f~~l~~~~~~   58 (245)
                      |+++.||+.+|..+.+.|++
T Consensus       309 A~dt~nv~~vF~~v~~~Il~  328 (340)
T 4fid_A          309 ATDGSNIKRVFMLAVDVIMK  328 (340)
T ss_dssp             TTCHHHHHHHHHHHHHHHHH
T ss_pred             eeCcHHHHHHHHHHHHHHHH
Confidence            99999999999999999987

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.72  E-value=3.1e-05  Score=65.55  Aligned_cols=56  Identities=20%  Similarity=0.228  Sum_probs=37.3

Q ss_pred             eEEEEeecCCCccCCC--CCHHHHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          2 VIMLIGNKSDLDARRE--VKKEEGEVFARE---HGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~--v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      |+++|+||+|+.+.+.  ...++...++..   .+.+++++||++|.|++++|+.+.+.+.
T Consensus       137 ~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i~  197 (408)
T 1s0u_A          137 KIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFIP  197 (408)
T ss_dssp             CEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHSC
T ss_pred             eEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            6899999999976443  234556666654   2568999999999999999999887653

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=97.66  E-value=2e-05  Score=67.71  Aligned_cols=52  Identities=15%  Similarity=0.106  Sum_probs=39.8

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      .|+++|+||+|+...+.+.  ....++  .+.+++++||++|.|++++|..+.+.+
T Consensus       331 ~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL~~~i~~~~  382 (462)
T 3geh_A          331 RPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSLETAILEIV  382 (462)
T ss_dssp             SCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence            3899999999997655443  111111  356799999999999999999998876

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=97.63  E-value=7.1e-05  Score=66.21  Aligned_cols=55  Identities=22%  Similarity=0.239  Sum_probs=44.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCc---EEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLV---FMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~---~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++|+||+|+...+  ..+....++..++..   ++++||++|.||+++|+.+++.+.
T Consensus       124 ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~lp  181 (599)
T 3cb4_D          124 LEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDIP  181 (599)
T ss_dssp             CEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHSC
T ss_pred             CCEEEeeeccCccccc--HHHHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcCC
Confidence            5899999999997543  233456677777764   899999999999999999988764

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.63  E-value=3.4e-05  Score=62.57  Aligned_cols=56  Identities=18%  Similarity=0.110  Sum_probs=42.0

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      .|+++|+||+|+...+....+....++..++. .++++||++|.|++++++.+.+.+
T Consensus       117 ~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i~~~l  173 (301)
T 1ega_A          117 APVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL  173 (301)
T ss_dssp             SCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             CCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHHHHhC
Confidence            48999999999865222223444556666665 689999999999999999988754

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.62  E-value=1.8e-05  Score=64.14  Aligned_cols=52  Identities=27%  Similarity=0.104  Sum_probs=38.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHh-C-CcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREH-G-LVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~-~-~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|+++|+||+|+...+.    +....+..+ + ..++++||++|.|++++|+.+.+.+
T Consensus       118 ~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          118 VPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  171 (301)
T ss_dssp             SCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCCCCCHHHHHHHHHHhc
Confidence            48999999999865432    022233332 3 4689999999999999999988754

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=97.53  E-value=1.3e-05  Score=61.59  Aligned_cols=44  Identities=20%  Similarity=0.205  Sum_probs=29.4

Q ss_pred             CeEEEEeecCCCccCCCCC------HHHHHHHHHHhCCcEEEecccCCCc
Q psy13390          1 MVIMLIGNKSDLDARREVK------KEEGEVFAREHGLVFMETSAKLATN   44 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~------~~~~~~~~~~~~~~~~~~Sa~~~~~   44 (245)
                      +|+++|+||+|+...+.+.      .+++..++...+..++++||++|.+
T Consensus       121 ~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~Sa~~~~~  170 (218)
T 1nrj_B          121 IDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEE  170 (218)
T ss_dssp             CCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC--------
T ss_pred             CCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhccccccccccccc
Confidence            5899999999998776654      5567778888888999999998875

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=97.53  E-value=9.2e-05  Score=65.45  Aligned_cols=55  Identities=25%  Similarity=0.232  Sum_probs=43.3

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCC---cEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGL---VFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~---~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++|+||+|+...+  ..+....++..++.   .++++||++|.||+++|+.+++.+.
T Consensus       126 ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~lp  183 (600)
T 2ywe_A          126 LVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRIP  183 (600)
T ss_dssp             CEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             CCEEEEEeccCccccC--HHHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhcc
Confidence            5899999999997543  22334556666676   3899999999999999999988774

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=97.48  E-value=6.7e-05  Score=64.84  Aligned_cols=57  Identities=18%  Similarity=0.090  Sum_probs=42.2

Q ss_pred             CeEEEEeecCCCccCCC--CCHHHHHHHHHHh----CCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARRE--VKKEEGEVFAREH----GLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~--v~~~~~~~~~~~~----~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++|+||+|+.+...  ...++...+....    +.+++++||++|.|++++|+.+.+.+.
T Consensus       126 ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          126 IPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             CCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            47799999999864211  1123344555544    567999999999999999999998775

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.44  E-value=2.4e-05  Score=66.30  Aligned_cols=55  Identities=13%  Similarity=0.061  Sum_probs=31.4

Q ss_pred             CeEEEEeecCCCccCCCCCH--HHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKK--EEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE   55 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~   55 (245)
                      +|+++|+||+|+...+.+..  +++..++...++.+|++||+++.+++++|..+...
T Consensus       168 v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~~~~~~l~~~  224 (418)
T 2qag_C          168 VNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  224 (418)
T ss_dssp             SEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC-----------------
T ss_pred             CcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHHHHHHHHHhh
Confidence            48999999999876555554  66778888899999999999999999887766543

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=97.43  E-value=6e-05  Score=63.79  Aligned_cols=56  Identities=16%  Similarity=0.126  Sum_probs=40.5

Q ss_pred             eEEEEeecCCCccCCC--CCHHHHHHHHHH---hCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          2 VIMLIGNKSDLDARRE--VKKEEGEVFARE---HGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~--v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      |+++|+||+|+.+...  ...++...+...   .+.+++++||++|.|++++|+.+.+.+.
T Consensus       139 ~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~~  199 (410)
T 1kk1_A          139 NIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFIP  199 (410)
T ss_dssp             CEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             cEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhCC
Confidence            6899999999865321  122334444443   3568999999999999999999887653

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=97.41  E-value=0.00025  Score=59.89  Aligned_cols=55  Identities=16%  Similarity=0.242  Sum_probs=38.0

Q ss_pred             eEEEEeecCCCccCCCCC--HHHHHHHHHHh---CCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          2 VIMLIGNKSDLDARREVK--KEEGEVFAREH---GLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~v~--~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      |+++|+||+|+.+.....  .++...+....   +.+++++||++|.|++++|+.+.+.+
T Consensus       131 ~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          131 NLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             CEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             CEEEEEECccccchHHHHHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            789999999986432111  11112222211   56799999999999999999998765

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=97.35  E-value=0.0024  Score=53.19  Aligned_cols=109  Identities=12%  Similarity=0.005  Sum_probs=60.9

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhh----h---hHhhccCCcEEEEEEeCCChhh-HHHHHHHHHHHH
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRS----I---TRSYYRGAAGALLVYDITRRET-FNHLTTWLEDAR  164 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----~---~~~~~~~~d~vi~v~d~~~~~s-~~~~~~~~~~~~  164 (245)
                      ...+-.++|.....-.+.....++.|+||||...-..    +   .-..++.||++++|+|++++.. ++.+...+..+.
T Consensus        98 ~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il~vvD~~~p~~~~~~i~~EL~~~~  177 (376)
T 4a9a_A           98 EAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLFIILDVNKPLHHKQIIEKELEGVG  177 (376)
T ss_dssp             CGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEEEEEETTSHHHHHHHHHHHHHHTT
T ss_pred             cccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccccccccCccHHHHHHHHHHHHHhh
Confidence            3344445555555333333335689999999743211    1   1235678999999999998743 222222332221


Q ss_pred             hhcCCCCeEEEEEeCCCCcc--------CcccCHHHHHHHHHHcCC
Q psy13390        165 QHSNSNMVIMLIGNKSDLDA--------RREVKKEEGEVFAREHGL  202 (245)
Q Consensus       165 ~~~~~~~piivv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~  202 (245)
                      ... .+.|.+++.||.|...        ......++.+.+...+.+
T Consensus       178 ~~l-~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~l  222 (376)
T 4a9a_A          178 IRL-NKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRI  222 (376)
T ss_dssp             EEE-TCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTC
T ss_pred             Hhh-ccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcc
Confidence            111 4578889999999631        123455555555554443

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=97.35  E-value=0.00022  Score=60.27  Aligned_cols=56  Identities=14%  Similarity=-0.012  Sum_probs=42.9

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      .|.+||+||+|+...  ...++...+....+..++.+||+++.|++++|+.+++.+..
T Consensus       270 ~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~~~l~~  325 (416)
T 1udx_A          270 RPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLPALKEALHALVRS  325 (416)
T ss_dssp             SCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHHHHHHh
Confidence            378999999998643  12333344445557789999999999999999999998854

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=97.33  E-value=2.2e-05  Score=60.04  Aligned_cols=16  Identities=19%  Similarity=0.376  Sum_probs=13.6

Q ss_pred             CeEEEEeecCCCccCC
Q psy13390          1 MVIMLIGNKSDLDARR   16 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~   16 (245)
                      +|++|||||+||...+
T Consensus       116 ~piilv~nK~Dl~~~~  131 (214)
T 2fh5_B          116 PSLLIACNKQDIAMAK  131 (214)
T ss_dssp             CEEEEEEECTTSTTCC
T ss_pred             CCEEEEEECCCCCCcc
Confidence            5899999999997654

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=97.29  E-value=0.00014  Score=60.26  Aligned_cols=56  Identities=13%  Similarity=0.109  Sum_probs=39.1

Q ss_pred             eEEEEeecCCCccCCCCCHHHHHHHHHH----------hCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          2 VIMLIGNKSDLDARREVKKEEGEVFARE----------HGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      |+++|.||+|+.+...... ....+...          ++.+++++||++|.|+++++..+.+.+..
T Consensus       219 p~ivVlNK~Dl~~~~~~~~-~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          219 ADIVVVNKADGEHHKEARL-AARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             CSEEEEECCCGGGHHHHHH-HHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCcChhHHHH-HHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            7799999999864321111 11222222          14679999999999999999999887754

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.27  E-value=0.00032  Score=58.32  Aligned_cols=59  Identities=20%  Similarity=0.007  Sum_probs=42.4

Q ss_pred             CeEEEEeecCCCccCCCC-CHHHHHHHHHHh-C--CcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREV-KKEEGEVFAREH-G--LVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v-~~~~~~~~~~~~-~--~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      .|+++|+||+|+...... ..+.+..++..+ .  ..++++||++|.|++++|..+.+.+...
T Consensus       293 ~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~~  355 (364)
T 2qtf_A          293 KPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKRTNLELLRDKIYQLATQL  355 (364)
T ss_dssp             CCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCCcCHHHHHHHHHHHhccc
Confidence            489999999998653310 012334455655 3  3689999999999999999998877554

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=97.26  E-value=0.00035  Score=55.02  Aligned_cols=26  Identities=15%  Similarity=0.008  Sum_probs=23.2

Q ss_pred             CcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390         32 LVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus        32 ~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      .+++++||++|.|++++|..+.+.+.
T Consensus       231 ~~~~~~SA~~~~gi~~l~~~i~~~~~  256 (262)
T 1yrb_A          231 VRVLYLSAKTREGFEDLETLAYEHYC  256 (262)
T ss_dssp             CCCEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccceEEEecCcccHHHHHHHHHHHhc
Confidence            47899999999999999999988764

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=97.21  E-value=0.00015  Score=62.78  Aligned_cols=47  Identities=15%  Similarity=0.095  Sum_probs=32.9

Q ss_pred             eEEEEeecCCCccCCCCCHHHHHH----HHHHh-----CCcEEEecccCCCcHHHH
Q psy13390          2 VIMLIGNKSDLDARREVKKEEGEV----FAREH-----GLVFMETSAKLATNVEEA   48 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~v~~~~~~~----~~~~~-----~~~~~~~Sa~~~~~i~~~   48 (245)
                      |+++|+||+|+.+.++...++...    +....     +.+++++||++|.|++++
T Consensus       173 ~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~el  228 (483)
T 3p26_A          173 NLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  228 (483)
T ss_dssp             CEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSSS
T ss_pred             cEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCcccc
Confidence            589999999997654444443333    33333     346899999999999853

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=97.11  E-value=0.00066  Score=58.75  Aligned_cols=102  Identities=13%  Similarity=0.061  Sum_probs=61.7

Q ss_pred             EEEEEEEcCCChhhhhh-hhH---hh--ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeE-EEEEeCCCCccC
Q psy13390        113 QIKLQIWDTAGQEAFRS-ITR---SY--YRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVI-MLIGNKSDLDAR  185 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~-~~~---~~--~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pi-ivv~nK~Dl~~~  185 (245)
                      .+.+.|+||||...... ++.   ..  +..+|.+++|+|++......   .....+..    .+|+ ++|.||+|....
T Consensus       183 ~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~~~---~~a~~~~~----~~~i~gvVlNK~D~~~~  255 (504)
T 2j37_W          183 NFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQACE---AQAKAFKD----KVDVASVIVTKLDGHAK  255 (504)
T ss_dssp             TCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTTHH---HHHHHHHH----HHCCCCEEEECTTSCCC
T ss_pred             CCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEeccccccHH---HHHHHHHh----hcCceEEEEeCCccccc
Confidence            35699999999754321 111   11  23789999999998754321   11222222    1565 889999997532


Q ss_pred             cccCHHHHHHHHHHcCCcE------------------EEeccCCCCC-HHHHHHHHHHH
Q psy13390        186 REVKKEEGEVFAREHGLVF------------------METSAKLATN-VEEAFIDTAKE  225 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~------------------~~~Sa~~~~~-i~~~~~~i~~~  225 (245)
                      ..    .........+.|+                  +.+|+.+|.| +.++++++.+.
T Consensus       256 ~g----~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          256 GG----GALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CT----HHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             hH----HHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            21    1222233344443                  4478999999 98888888755

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=97.05  E-value=0.00012  Score=63.92  Aligned_cols=55  Identities=24%  Similarity=0.131  Sum_probs=38.2

Q ss_pred             CeEEEEeecCCCccCCC--CCHHHHHHH---HHHh--CCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARRE--VKKEEGEVF---AREH--GLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~--v~~~~~~~~---~~~~--~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|+++|+||+|+.+.+.  +..+ ...+   +..+  ..+++++||++|.|++++|+.+...+
T Consensus       105 vPiIVViNKiDl~~~~~~~v~~~-l~~~~~~~e~~~~~~~iv~vSAktG~GI~eLle~I~~l~  166 (537)
T 3izy_P          105 VPIVLAINKCDKAEADPEKVKKE-LLAYDVVCEDYGGDVQAVHVSALTGENMMALAEATIALA  166 (537)
T ss_dssp             CCEEECCBSGGGTTTSCCSSSSH-HHHTTSCCCCSSSSEEECCCCSSSSCSSHHHHHHHHHHH
T ss_pred             CcEEEEEecccccccchHHHHHH-HHhhhhhHHhcCCCceEEEEECCCCCCchhHHHHHHHhh
Confidence            58999999999874322  1111 1111   1122  24799999999999999999998765

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.02  E-value=0.00036  Score=58.18  Aligned_cols=56  Identities=7%  Similarity=-0.014  Sum_probs=39.8

Q ss_pred             eE-EEEee-cCCCccCCCCCH--HHHHHHHHHhC---CcEEE--ecccC---CCcHHHHHHHHHHHHHH
Q psy13390          2 VI-MLIGN-KSDLDARREVKK--EEGEVFAREHG---LVFME--TSAKL---ATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         2 ~~-~lvgn-K~Dl~~~~~v~~--~~~~~~~~~~~---~~~~~--~Sa~~---~~~i~~~f~~l~~~~~~   58 (245)
                      |. ++|+| |+|+ +.+.+..  ++...+.+..+   .++++  +||++   +.|++++|..+.+.+..
T Consensus       113 ~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA~~~~~g~gi~~L~~~l~~~~~~  180 (370)
T 2elf_A          113 KHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNKSAKNPFEGVDELKARINEVAEK  180 (370)
T ss_dssp             CEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCTTSSSTTTTHHHHHHHHHHHHHH
T ss_pred             CeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEecccccccCcCCCCHHHHHHHHHhhccc
Confidence            55 88888 9998 4322221  33444444433   57999  99999   99999999999887654

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=96.98  E-value=6.3e-05  Score=60.61  Aligned_cols=56  Identities=16%  Similarity=-0.002  Sum_probs=38.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHH--hC-CcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFARE--HG-LVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      .|+++|+||+|+.+.+....+........  .+ .+++++||++|.|++++|..+.+..
T Consensus       193 ~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          193 QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             SSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             CeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            48999999999976544333322210001  12 2578899999999999999998754

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=96.92  E-value=0.00011  Score=58.58  Aligned_cols=55  Identities=15%  Similarity=0.071  Sum_probs=28.8

Q ss_pred             CeEEEEeecCCCccCCCCC--HHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVK--KEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE   55 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~   55 (245)
                      +|+++|+||+|+.......  .+.........++.++++||+++.++++++..+.+.
T Consensus       145 ~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          145 VNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             SCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred             CCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence            5899999999975322211  122344445678889999999999999988777653

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=96.91  E-value=0.0015  Score=57.02  Aligned_cols=26  Identities=23%  Similarity=-0.044  Sum_probs=22.8

Q ss_pred             cEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390         33 VFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus        33 ~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +++.+||++|.||+++|+.+++.+..
T Consensus       252 PV~~gSA~~~~GV~~Lld~i~~~~p~  277 (528)
T 3tr5_A          252 PIFFGSAINNFGVGELLDAFVKEAPP  277 (528)
T ss_dssp             EEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred             EEEeccccCCccHHHHHHHHHHhCCC
Confidence            57889999999999999999987743

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=96.91  E-value=0.00033  Score=55.25  Aligned_cols=57  Identities=19%  Similarity=0.211  Sum_probs=39.0

Q ss_pred             eEEEEeecCCCccCCCCCH-------HHHHHHHHHhCCc---E--EEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          2 VIMLIGNKSDLDARREVKK-------EEGEVFAREHGLV---F--METSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~v~~-------~~~~~~~~~~~~~---~--~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +++++.||+|+... .+..       +++..++...+..   |  +++||++|.|++++|..+.+.+...
T Consensus       141 ~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~gv~~l~~~i~~~~~~~  209 (260)
T 2xtp_A          141 TIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNRAEGSNQDDQVKELMDCIEDLLMEK  209 (260)
T ss_dssp             EEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             EEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCcccccccHHHHHHHHHHHHHHHHhC
Confidence            34455559999743 2222       2344566666643   2  7899999999999999999887543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=96.90  E-value=0.00039  Score=58.57  Aligned_cols=56  Identities=21%  Similarity=0.151  Sum_probs=39.6

Q ss_pred             Ce-EEEEeecCCCccCCC---CCHHHHHHHHHHhC-----CcEEEecccCCCc----------HHHHHHHHHHHH
Q psy13390          1 MV-IMLIGNKSDLDARRE---VKKEEGEVFAREHG-----LVFMETSAKLATN----------VEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~-~~lvgnK~Dl~~~~~---v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~----------i~~~f~~l~~~~   56 (245)
                      +| +++|+||+|+.+...   ...++...+++..+     .+++++||++|.|          +.++|+.+.+.+
T Consensus       119 vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          119 VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             CCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence            36 689999999864211   11235566777665     5799999999775          888888877655

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=96.89  E-value=0.00064  Score=51.49  Aligned_cols=56  Identities=9%  Similarity=-0.022  Sum_probs=40.8

Q ss_pred             CeEEEEeecCCCccCC--CCCHHHHHHHHHHhC--CcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARR--EVKKEEGEVFAREHG--LVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~--~v~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|+++|+||+|+....  +...+.+..++...+  ..++++||+++.|++++|..+.+.+
T Consensus       138 ~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~  197 (210)
T 1pui_A          138 IAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF  197 (210)
T ss_dssp             CCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence            4788999999975421  112345555555554  4688999999999999999888765

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=96.84  E-value=0.0035  Score=55.48  Aligned_cols=26  Identities=12%  Similarity=0.004  Sum_probs=23.4

Q ss_pred             cEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390         33 VFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus        33 ~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +++++||++|.|++++++.+...+..
T Consensus       193 pvv~vSA~tG~GI~eLl~~I~~~~~~  218 (594)
T 1g7s_A          193 SIIPISAITGEGIPELLTMLMGLAQQ  218 (594)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             eEEEEeccCCCCchhHHHHHHhhccc
Confidence            68999999999999999999887754

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=96.82  E-value=0.00026  Score=60.36  Aligned_cols=50  Identities=28%  Similarity=0.210  Sum_probs=36.4

Q ss_pred             eEEEEeecCCCccCCC--C--CHHHHHHHHHHhC-----CcEEEecccCCCcHHHHHHH
Q psy13390          2 VIMLIGNKSDLDARRE--V--KKEEGEVFAREHG-----LVFMETSAKLATNVEEAFID   51 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~--v--~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~f~~   51 (245)
                      |+++|+||+|+.+...  +  ..++...+++.++     .+++++||++|.|++++|..
T Consensus       159 ~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~~~~  217 (434)
T 1zun_B          159 HIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNKSER  217 (434)
T ss_dssp             EEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSCCTT
T ss_pred             eEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCccccccc
Confidence            5899999999865321  1  1244556666677     57999999999999986543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=96.78  E-value=0.00049  Score=58.07  Aligned_cols=44  Identities=23%  Similarity=0.189  Sum_probs=30.8

Q ss_pred             Ce-EEEEeecCCCccCCC-C--CHHHHHHHHHHhC-----CcEEEecccCCCc
Q psy13390          1 MV-IMLIGNKSDLDARRE-V--KKEEGEVFAREHG-----LVFMETSAKLATN   44 (245)
Q Consensus         1 ~~-~~lvgnK~Dl~~~~~-v--~~~~~~~~~~~~~-----~~~~~~Sa~~~~~   44 (245)
                      +| +++|+||+|+.+.+. .  ..++...++...+     .+++++||++|.|
T Consensus       128 ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~SA~~g~~  180 (405)
T 2c78_A          128 VPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALLALE  180 (405)
T ss_dssp             CCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHH
T ss_pred             CCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEccHHHhhh
Confidence            46 889999999864211 1  1234556666665     5799999999988

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=96.78  E-value=9.4e-05  Score=64.00  Aligned_cols=54  Identities=26%  Similarity=0.307  Sum_probs=36.7

Q ss_pred             CeEEEEeecCCCccC--CCCCHH--HHHHHHHHhC--CcEEEecccCCCcHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDAR--REVKKE--EGEVFAREHG--LVFMETSAKLATNVEEAFIDTAK   54 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~--~~v~~~--~~~~~~~~~~--~~~~~~Sa~~~~~i~~~f~~l~~   54 (245)
                      +|+++|+||+|+...  +.+..+  +...++..++  .+++++||++|.|++++|+.++.
T Consensus       104 vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          104 VPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             CCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTTTCTTCTTHHHHTTT
T ss_pred             ceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeeeeccCcchhhhhhhh
Confidence            589999999999642  111111  0011122233  68999999999999999999875

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.68  E-value=0.0019  Score=57.99  Aligned_cols=27  Identities=7%  Similarity=-0.116  Sum_probs=24.0

Q ss_pred             CcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390         32 LVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus        32 ~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      .+++++||++|.||+++|+.+++.+..
T Consensus       248 ~pv~~~SA~~~~Gv~~Ll~~i~~~lp~  274 (665)
T 2dy1_A          248 YPVALASGEREIGVLPLLELILEALPS  274 (665)
T ss_dssp             EEEEECBTTTTBSHHHHHHHHHHHSCC
T ss_pred             eEEEEeecccCcCHHHHHHHHHHhCCC
Confidence            468999999999999999999988753

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=96.67  E-value=0.0026  Score=49.41  Aligned_cols=57  Identities=12%  Similarity=0.086  Sum_probs=40.0

Q ss_pred             eEEEEeecCCCccCCCCC------HHHHHHHHHHhCCcEEEecccCC-----CcHHHHHHHHHHHHHH
Q psy13390          2 VIMLIGNKSDLDARREVK------KEEGEVFAREHGLVFMETSAKLA-----TNVEEAFIDTAKEIYE   58 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~v~------~~~~~~~~~~~~~~~~~~Sa~~~-----~~i~~~f~~l~~~~~~   58 (245)
                      |+++|+||+|+...+.+.      .+....+++..+..++.+++..+     .++.++|..+.+.+.+
T Consensus       147 ~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          147 FMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             GEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            799999999986554443      24567788888888877776644     7899999888776643

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=96.63  E-value=0.00036  Score=59.51  Aligned_cols=49  Identities=22%  Similarity=0.243  Sum_probs=36.0

Q ss_pred             eEEEEeecCCCccCC--C----CCHHHHHHHHHHhC-----CcEEEecccCCCcHHHHHH
Q psy13390          2 VIMLIGNKSDLDARR--E----VKKEEGEVFAREHG-----LVFMETSAKLATNVEEAFI   50 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~--~----v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~f~   50 (245)
                      |+++|+||+|+.+..  +    ...++...++...+     .+++++||++|.|+.+++.
T Consensus       146 ~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~~  205 (435)
T 1jny_A          146 QLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKSE  205 (435)
T ss_dssp             TCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCCS
T ss_pred             eEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCcccccccc
Confidence            578999999986521  1    12345666777766     5799999999999987654

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=96.63  E-value=0.00082  Score=57.35  Aligned_cols=48  Identities=25%  Similarity=0.248  Sum_probs=33.2

Q ss_pred             EEEEeecCCCccCC--C----CCHHHHHHHHHHhC------CcEEEecccCCCcHHHHHH
Q psy13390          3 IMLIGNKSDLDARR--E----VKKEEGEVFAREHG------LVFMETSAKLATNVEEAFI   50 (245)
Q Consensus         3 ~~lvgnK~Dl~~~~--~----v~~~~~~~~~~~~~------~~~~~~Sa~~~~~i~~~f~   50 (245)
                      +++|+||+|+....  +    ...++...+++..+      .+++++||++|.|+++++.
T Consensus       158 iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          158 LIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             EEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            89999999985311  1    11233444555554      3699999999999999765

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=96.60  E-value=0.00074  Score=60.00  Aligned_cols=48  Identities=15%  Similarity=0.060  Sum_probs=33.6

Q ss_pred             eEEEEeecCCCccCCCCCHH----HHHHHHHHhC-----CcEEEecccCCCcHHHHH
Q psy13390          2 VIMLIGNKSDLDARREVKKE----EGEVFAREHG-----LVFMETSAKLATNVEEAF   49 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~v~~~----~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~f   49 (245)
                      |+++|+||+|+.+.++...+    +...+....+     .+++++||++|.||.++.
T Consensus       307 ~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el~  363 (611)
T 3izq_1          307 NLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKIE  363 (611)
T ss_dssp             EEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSCT
T ss_pred             eEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCccccC
Confidence            58999999998764332222    2334444444     479999999999998763

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=96.48  E-value=0.00056  Score=58.84  Aligned_cols=49  Identities=22%  Similarity=0.310  Sum_probs=34.5

Q ss_pred             Ce-EEEEeecCCCccCC------CCCHHHHHHHHHHh-C------CcEEEecccCCCcHHHHH
Q psy13390          1 MV-IMLIGNKSDLDARR------EVKKEEGEVFAREH-G------LVFMETSAKLATNVEEAF   49 (245)
Q Consensus         1 ~~-~~lvgnK~Dl~~~~------~v~~~~~~~~~~~~-~------~~~~~~Sa~~~~~i~~~f   49 (245)
                      +| +++|+||+|+....      ....++...+++.. +      .+++++||++|.|+.++|
T Consensus       181 vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          181 INHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             CSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             CCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            35 89999999985311      11123455666665 3      459999999999999876

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=96.45  E-value=0.0024  Score=60.24  Aligned_cols=56  Identities=20%  Similarity=0.076  Sum_probs=40.0

Q ss_pred             Ce-EEEEeecCCCccCCCC---CHHHHHHHHHHhC-----CcEEEecccCC--------CcHHHHHHHHHHHH
Q psy13390          1 MV-IMLIGNKSDLDARREV---KKEEGEVFAREHG-----LVFMETSAKLA--------TNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~-~~lvgnK~Dl~~~~~v---~~~~~~~~~~~~~-----~~~~~~Sa~~~--------~~i~~~f~~l~~~~   56 (245)
                      +| +++|+||+|+.+.+..   ..++...++...+     .+++++||++|        .||.++|+.+.+.+
T Consensus       412 IP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~I  484 (1289)
T 3avx_A          412 VPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSYI  484 (1289)
T ss_dssp             CSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHTS
T ss_pred             CCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhhc
Confidence            46 7899999998752211   1245566777665     57999999999        46888888877655

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=96.31  E-value=0.0028  Score=52.16  Aligned_cols=56  Identities=16%  Similarity=0.013  Sum_probs=36.6

Q ss_pred             eEEEEeecCCCccCCCCCH--HHHHHHHHHh-------CCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          2 VIMLIGNKSDLDARREVKK--EEGEVFAREH-------GLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~v~~--~~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      |.++|.||+|+.....+..  ++.......+       ..+++++||++|.|++++++.+.+.+.
T Consensus       196 p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          196 ADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             CSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             cCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            6789999999854211110  0111111121       346889999999999999999988663

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=96.27  E-value=0.0015  Score=56.05  Aligned_cols=47  Identities=26%  Similarity=0.227  Sum_probs=33.4

Q ss_pred             eEEEEeecCCCccCCC----CCHHHHHHHHHHhC-----CcEEEecccCCCcHHHH
Q psy13390          2 VIMLIGNKSDLDARRE----VKKEEGEVFAREHG-----LVFMETSAKLATNVEEA   48 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~----v~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~~   48 (245)
                      ++++|+||+|+.+...    ...++...+++..+     .+++++||++|.|+.++
T Consensus       147 ~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          147 QLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             EEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             eEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            4899999999863211    11234556666665     57999999999999755

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=96.23  E-value=0.0026  Score=53.29  Aligned_cols=38  Identities=16%  Similarity=0.046  Sum_probs=24.0

Q ss_pred             EEEEEcCCChhhhhh-------hhHhhccCCcEEEEEEeCCChhh
Q psy13390        115 KLQIWDTAGQEAFRS-------ITRSYYRGAAGALLVYDITRRET  152 (245)
Q Consensus       115 ~~~l~Dt~G~~~~~~-------~~~~~~~~~d~vi~v~d~~~~~s  152 (245)
                      .+.+|||||+.....       .+..+++.+|++++|+|+++..+
T Consensus        87 ~i~lvDtpGl~~~as~~~glg~~~l~~ir~aD~Il~VvD~~~~~~  131 (396)
T 2ohf_A           87 FLNVVDIAGLVKGAHNGQGLGNAFLSHISACDGIFHLTRAFEDDD  131 (396)
T ss_dssp             EEEEEECCC-----------CCHHHHHHHTSSSEEEEEEC-----
T ss_pred             ccEEEECCCcccccchhhHHHHHHHHHHHhcCeEEEEEecCCCcc
Confidence            599999999876543       34568899999999999986433

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.22  E-value=0.077  Score=44.37  Aligned_cols=42  Identities=12%  Similarity=0.121  Sum_probs=29.3

Q ss_pred             CCeEEEEEeCCCCcc--CcccCHHHHHHHHHHcC--CcEEEeccCC
Q psy13390        170 NMVIMLIGNKSDLDA--RREVKKEEGEVFAREHG--LVFMETSAKL  211 (245)
Q Consensus       170 ~~piivv~nK~Dl~~--~~~~~~~~~~~~~~~~~--~~~~~~Sa~~  211 (245)
                      ..|++.++|+.|..-  ...-..+..+.++...+  .+++.+||+.
T Consensus       224 ~kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~  269 (392)
T 1ni3_A          224 AKPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF  269 (392)
T ss_dssp             GSCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred             cCceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence            489999999998421  11122456677776665  7899999886

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=96.01  E-value=0.00094  Score=55.39  Aligned_cols=56  Identities=11%  Similarity=-0.079  Sum_probs=43.3

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      .|+++|+||+|+.+.+....+.+..++..++.+|+++|+.++.++++.+.......
T Consensus       204 ~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~~~~~~~~~~  259 (360)
T 3t34_A          204 DRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINKNVDMIAARK  259 (360)
T ss_dssp             TTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHTTCCHHHHHH
T ss_pred             CCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhccCCCHHHHHH
Confidence            37899999999987666555555555556678899999999999998876655544

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=95.98  E-value=0.024  Score=48.16  Aligned_cols=92  Identities=16%  Similarity=0.102  Sum_probs=56.5

Q ss_pred             EEEEEEcCCChhhhh-----hhhH-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcc
Q psy13390        114 IKLQIWDTAGQEAFR-----SITR-SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARRE  187 (245)
Q Consensus       114 ~~~~l~Dt~G~~~~~-----~~~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~  187 (245)
                      +.+.|+||+|.....     .+.. .....+|.+++|+|++......   .....+....   .+..+|.||+|....  
T Consensus       183 ~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~---~~a~~f~~~~---~i~gVIlTKlD~~~~--  254 (443)
T 3dm5_A          183 VDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAY---NQALAFKEAT---PIGSIIVTKLDGSAK--  254 (443)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHH---HHHHHHHHSC---TTEEEEEECCSSCSS--
T ss_pred             CCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHH---HHHHHHHhhC---CCeEEEEECCCCccc--
Confidence            568999999964322     1221 2344689999999998653322   2223333222   345688999997532  


Q ss_pred             cCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q psy13390        188 VKKEEGEVFAREHGLVFMETSAKLATNVEE  217 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  217 (245)
                        ...+.......+.|+.+++.  |+++++
T Consensus       255 --gG~~ls~~~~~g~PI~fig~--Ge~vdd  280 (443)
T 3dm5_A          255 --GGGALSAVAATGAPIKFIGT--GEKIDD  280 (443)
T ss_dssp             --HHHHHHHHHTTCCCEEEEEC--SSSTTC
T ss_pred             --ccHHHHHHHHHCCCEEEEEc--CCChHH
Confidence              23345555667899888875  776653

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=95.92  E-value=0.0027  Score=56.26  Aligned_cols=44  Identities=30%  Similarity=0.225  Sum_probs=29.0

Q ss_pred             EEEEeecCCCccCCCCCH----HHHHHHH-HHhCC-----cEEEecccCCCcHH
Q psy13390          3 IMLIGNKSDLDARREVKK----EEGEVFA-REHGL-----VFMETSAKLATNVE   46 (245)
Q Consensus         3 ~~lvgnK~Dl~~~~~v~~----~~~~~~~-~~~~~-----~~~~~Sa~~~~~i~   46 (245)
                      +++|+||+|+.+......    ++...+. +..+.     +++++||++|.||.
T Consensus       318 iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~  371 (592)
T 3mca_A          318 IVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLI  371 (592)
T ss_dssp             EEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSC
T ss_pred             EEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccc
Confidence            899999999865221111    2223333 33344     69999999999998

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=95.65  E-value=0.014  Score=43.37  Aligned_cols=35  Identities=29%  Similarity=0.494  Sum_probs=28.7

Q ss_pred             CeEEEEeecCCCccC------------CCCCHHHHHHHHHHhCCcEE
Q psy13390          1 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGLVFM   35 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~~~~   35 (245)
                      +|+++||||+|+.+.            +.+..+++..++..++...+
T Consensus       123 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  169 (194)
T 2atx_A          123 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY  169 (194)
T ss_dssp             CCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred             CCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEE
Confidence            589999999999753            57888889999988876555

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=95.63  E-value=0.02  Score=47.23  Aligned_cols=55  Identities=13%  Similarity=0.016  Sum_probs=35.9

Q ss_pred             eEEEEeecCCCccCCCCCHHHHHHHHH----------HhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          2 VIMLIGNKSDLDARREVKKEEGEVFAR----------EHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~v~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      |.++|.||+|+.+.... ......+..          .+..+++.+||++|.|+++++..+.+.+.
T Consensus       214 ~~ivVlNK~Dl~~~~~~-~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          214 ADLVAVTKSDGDLIVPA-RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             CSEEEECCCSGGGHHHH-HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCEEEEeeecCCCchhH-HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            56889999998532110 001122222          12346788999999999999999987653

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=95.61  E-value=0.0087  Score=49.44  Aligned_cols=49  Identities=12%  Similarity=0.011  Sum_probs=34.3

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHH---HhCCcEEEecccCCCcHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAR---EHGLVFMETSAKLATNVEEAFID   51 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~---~~~~~~~~~Sa~~~~~i~~~f~~   51 (245)
                      +|.+||.||+||.+...  .+....|..   ..|.+.+.+||+++.|++++...
T Consensus       161 ~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~  212 (358)
T 2rcn_A          161 VEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEA  212 (358)
T ss_dssp             CEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHH
T ss_pred             CCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHh
Confidence            47899999999965321  111333433   45788899999999999987653

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.49  E-value=0.0025  Score=51.64  Aligned_cols=51  Identities=16%  Similarity=0.059  Sum_probs=34.4

Q ss_pred             CeEEEEeecCCCccCCCC--CHHHHHHHHHHhCCcEEEecccCCCcHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREV--KKEEGEVFAREHGLVFMETSAKLATNVEEAFID   51 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~   51 (245)
                      +|.+||.||+||.+....  ..+....+....|...+.+||+++.|+++++..
T Consensus       118 ~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~  170 (307)
T 1t9h_A          118 IQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPH  170 (307)
T ss_dssp             CEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGG
T ss_pred             CCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhh
Confidence            478999999999754210  012223333345788899999999998877643

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=95.46  E-value=0.011  Score=44.89  Aligned_cols=55  Identities=11%  Similarity=-0.043  Sum_probs=38.2

Q ss_pred             CeEEEEeecC-CCccCCCCCHHHHHHHHH----HhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKS-DLDARREVKKEEGEVFAR----EHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~-Dl~~~~~v~~~~~~~~~~----~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++.+||. |++  ...+..+....-.    ......+.|||++|+|+.+-+++|++.+.
T Consensus       163 apLLVlANKqqDlp--~Ams~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~  222 (227)
T 3l82_B          163 RPLLVLSCISQGDV--KRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  222 (227)
T ss_dssp             SCEEEEEEESSTTS--CBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTT
T ss_pred             CeEEEEeCCCcCcc--CCCCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHH
Confidence            5899999996 674  3455544332211    11234799999999999999999987663

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=95.44  E-value=0.013  Score=47.30  Aligned_cols=57  Identities=12%  Similarity=-0.045  Sum_probs=35.0

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccC------CCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL------ATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~------~~~i~~~f~~l~~~~~   57 (245)
                      .|+++|+||+|+...+....+........++..|+++|+..      +.|+.+++..+.+.+.
T Consensus       199 ~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~~~~~gv~~l~~~~~~~~~  261 (315)
T 1jwy_B          199 KRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDIIAKKSIRESLKSEILYFK  261 (315)
T ss_dssp             SSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHHSSSCCHHHHHHHHHHHHH
T ss_pred             CcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhhccCCCHHHHHHHHHHHHh
Confidence            48999999999875543222222210011225677776654      6788888887776653

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=95.43  E-value=0.044  Score=44.05  Aligned_cols=93  Identities=17%  Similarity=0.083  Sum_probs=58.2

Q ss_pred             EEEEEEEcCCChhh--hhh-hhH-----hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEEeCCCCc
Q psy13390        113 QIKLQIWDTAGQEA--FRS-ITR-----SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV-IMLIGNKSDLD  183 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~--~~~-~~~-----~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl~  183 (245)
                      .+.+.|+||||...  ... +..     .....+|.+++|+|++...   +.......+..    ..| ..+|.||+|..
T Consensus       180 ~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g~---~~~~~~~~~~~----~~~i~gvVlnk~D~~  252 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQ---KAYDLASKFNQ----ASKIGTIIITKMDGT  252 (297)
T ss_dssp             TCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGG---GHHHHHHHHHH----TCTTEEEEEECGGGC
T ss_pred             CCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCchH---HHHHHHHHHHh----hCCCCEEEEeCCCCC
Confidence            34689999999866  321 111     2345799999999987432   22222222322    245 67889999964


Q ss_pred             cCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q psy13390        184 ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA  218 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  218 (245)
                      .    .......+....+.|+.+++  +|++++++
T Consensus       253 ~----~~g~~~~~~~~~~~pi~~i~--~Ge~v~dl  281 (297)
T 1j8m_F          253 A----KGGGALSAVAATGATIKFIG--TGEKIDEL  281 (297)
T ss_dssp             T----THHHHHHHHHTTTCCEEEEE--CSSSTTCE
T ss_pred             c----chHHHHHHHHHHCcCEEEEe--CCCChhhc
Confidence            2    22344556677889988876  57777654

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=95.31  E-value=0.00035  Score=57.83  Aligned_cols=54  Identities=15%  Similarity=0.038  Sum_probs=35.6

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHH--HHHHhC-CcEEEecccCCCcHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEV--FAREHG-LVFMETSAKLATNVEEAFIDTAK   54 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~~f~~l~~   54 (245)
                      .|+++|+||+|+.+.+....+....  +....+ ..++++||+++.|++++|..+.+
T Consensus       198 ~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~  254 (353)
T 2x2e_A          198 QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAA  254 (353)
T ss_dssp             TTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHH
T ss_pred             CceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHH
Confidence            3789999999987544321211110  000122 24678999999999999999876

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=95.30  E-value=0.018  Score=43.15  Aligned_cols=35  Identities=34%  Similarity=0.466  Sum_probs=28.5

Q ss_pred             CeEEEEeecCCCccC------------CCCCHHHHHHHHHHhCCcEE
Q psy13390          1 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHGLVFM   35 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~------------~~v~~~~~~~~~~~~~~~~~   35 (245)
                      +|+++|+||+|+.+.            +.+..+++..++...+...+
T Consensus       130 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  176 (201)
T 2gco_A          130 VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY  176 (201)
T ss_dssp             CCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred             CCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence            589999999999764            56888888888888876655

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=95.15  E-value=0.013  Score=52.88  Aligned_cols=57  Identities=11%  Similarity=0.014  Sum_probs=38.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHH----------HHH-----HHHHh--------CCcEEEeccc--------------CCC
Q psy13390          1 MVIMLIGNKSDLDARREVKKEE----------GEV-----FAREH--------GLVFMETSAK--------------LAT   43 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~----------~~~-----~~~~~--------~~~~~~~Sa~--------------~~~   43 (245)
                      .|+++|+||+|+...+.++.++          ...     +....        ...++++||+              ++.
T Consensus       231 ~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~  310 (695)
T 2j69_A          231 LTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQALRRRLKNPQADLDGT  310 (695)
T ss_dssp             CCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTS
T ss_pred             CCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHHHHhhccCchhhhhcc
Confidence            3789999999986544222211          111     11111        2368999999              999


Q ss_pred             cHHHHHHHHHHHHH
Q psy13390         44 NVEEAFIDTAKEIY   57 (245)
Q Consensus        44 ~i~~~f~~l~~~~~   57 (245)
                      |+++++..+.+.+.
T Consensus       311 Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          311 GFPKFMDSLNTFLT  324 (695)
T ss_dssp             SHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999987663

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=94.91  E-value=0.054  Score=43.26  Aligned_cols=55  Identities=9%  Similarity=-0.077  Sum_probs=38.2

Q ss_pred             CeEEEEeec-CCCccCCCCCHHHHHHHHHH----hCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNK-SDLDARREVKKEEGEVFARE----HGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK-~Dl~~~~~v~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++.+|| -|++  ...+..+....-..    .....+.|||.+|+|+.+-++.+++.+.
T Consensus       248 apLLVfANKkQDlp--~Ams~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~  307 (312)
T 3l2o_B          248 RPLLVLSCISQGDV--KRMPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVE  307 (312)
T ss_dssp             CCEEEEEEESSTTS--CBCCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSC
T ss_pred             CeEEEEeCCccccc--CCCCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHH
Confidence            589999997 4874  34455443221110    1234799999999999999999998763

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=94.70  E-value=0.0057  Score=43.75  Aligned_cols=33  Identities=18%  Similarity=0.090  Sum_probs=26.9

Q ss_pred             HHHHHHHhCC-cEEEecccCCCcHHHHHHHHHHHH
Q psy13390         23 GEVFAREHGL-VFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus        23 ~~~~~~~~~~-~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +..++ .++. +++++||++|.|++++|..+++.+
T Consensus       127 ~~~~~-~~~~~~~~~~Sa~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          127 LGPLY-GLGFGDPIPTSSEHARGLEELLEAIWERL  160 (161)
T ss_dssp             CGGGG-GGSSCSCEECBTTTTBSHHHHHHHHHHHC
T ss_pred             HHHHH-hCCCCCeEEEecccCCChHHHHHHHHHhC
Confidence            34455 5676 799999999999999999998764

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=94.66  E-value=0.039  Score=45.22  Aligned_cols=56  Identities=9%  Similarity=0.019  Sum_probs=35.1

Q ss_pred             eEEEEeecCCCccCCCCCHHHHHHHHHHh----------CCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          2 VIMLIGNKSDLDARREVKKEEGEVFAREH----------GLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~----------~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +.++|.||+|+.............+....          ..+++.+||+++.|++++++.+.+...
T Consensus       195 ~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          195 ADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             CSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             ccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            34677799996432111111122333221          346788999999999999998887653

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=94.62  E-value=0.012  Score=42.92  Aligned_cols=32  Identities=28%  Similarity=0.511  Sum_probs=26.6

Q ss_pred             CeEEEEeecCCCccCCC----------CCHHHHHHHHHHhCC
Q psy13390          1 MVIMLIGNKSDLDARRE----------VKKEEGEVFAREHGL   32 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~----------v~~~~~~~~~~~~~~   32 (245)
                      +|+++|+||+|+.+.+.          +..+++..++..++.
T Consensus       113 ~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  154 (182)
T 3bwd_D          113 VPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGA  154 (182)
T ss_dssp             CCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTC
T ss_pred             CCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCC
Confidence            58999999999976544          578889999998886

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=94.57  E-value=0.19  Score=42.63  Aligned_cols=85  Identities=16%  Similarity=0.043  Sum_probs=49.9

Q ss_pred             EEEEEEEcCCChhhhhh-----hhH-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-e-EEEEEeCCCCcc
Q psy13390        113 QIKLQIWDTAGQEAFRS-----ITR-SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM-V-IMLIGNKSDLDA  184 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~-----~~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-p-iivv~nK~Dl~~  184 (245)
                      .+.+.|+||+|......     +.. ..+..+|.+++|+|++.+..   .......+   . ... | ..+|.||+|...
T Consensus       180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~~---~~~~~~~~---~-~~~~~i~gvVlnK~D~~~  252 (432)
T 2v3c_C          180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQQ---AGIQAKAF---K-EAVGEIGSIIVTKLDGSA  252 (432)
T ss_dssp             SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGGG---HHHHHHHH---H-TTSCSCEEEEEECSSSCS
T ss_pred             CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccHH---HHHHHHHH---h-hcccCCeEEEEeCCCCcc
Confidence            35689999999754321     111 12336899999999876532   22222222   2 235 5 788999999743


Q ss_pred             CcccCHHHHHHHHHHcCCcEEEec
Q psy13390        185 RREVKKEEGEVFAREHGLVFMETS  208 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~S  208 (245)
                      ..    .....+....+.|+.+++
T Consensus       253 ~~----g~~l~~~~~~~~pi~~ig  272 (432)
T 2v3c_C          253 KG----GGALSAVAETKAPIKFIG  272 (432)
T ss_dssp             TT----HHHHHHHHHSSCCEEEEC
T ss_pred             ch----HHHHHHHHHHCCCEEEee
Confidence            21    223345566777766553

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=94.32  E-value=0.1  Score=44.20  Aligned_cols=92  Identities=17%  Similarity=0.105  Sum_probs=56.1

Q ss_pred             EEEEEEEcCCChhh--h-----hhhhH-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q psy13390        113 QIKLQIWDTAGQEA--F-----RSITR-SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDA  184 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~--~-----~~~~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  184 (245)
                      .+.+.|+||+|...  .     ..+.. ......+.+++|+|+.......   .....+....   .+..+|.||.|...
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~---~~a~~f~~~~---~~~gVIlTKlD~~a  252 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY---DLASRFHQAS---PIGSVIITKMDGTA  252 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH---HHHHHHHHHC---SSEEEEEECGGGCS
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH---HHHHHHhccc---CCcEEEEecccccc
Confidence            34578999999644  1     11211 1223579999999998653322   2223333322   35678999999642


Q ss_pred             CcccCHHHHHHHHHHcCCcEEEeccCCCCCHH
Q psy13390        185 RREVKKEEGEVFAREHGLVFMETSAKLATNVE  216 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~  216 (245)
                          ....+.......+.|+.+++.  |++++
T Consensus       253 ----~~G~als~~~~~g~Pi~fig~--Ge~v~  278 (433)
T 3kl4_A          253 ----KGGGALSAVVATGATIKFIGT--GEKID  278 (433)
T ss_dssp             ----CHHHHHHHHHHHTCEEEEEEC--CSSSS
T ss_pred             ----cchHHHHHHHHHCCCEEEEEC--CCChH
Confidence                233455556667999888875  77764

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=94.18  E-value=0.12  Score=38.44  Aligned_cols=65  Identities=9%  Similarity=-0.037  Sum_probs=47.0

Q ss_pred             EEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc--CCCCeEEEEEeCCCC
Q psy13390        114 IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS--NSNMVIMLIGNKSDL  182 (245)
Q Consensus       114 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~piivv~nK~Dl  182 (245)
                      +.+.++|+++..  .......+..+|.+++++..+.. + ..+...++.+....  .++.++.+|.|+.|.
T Consensus        76 yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~  142 (206)
T 4dzz_A           76 YDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIE  142 (206)
T ss_dssp             SSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCT
T ss_pred             CCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCC
Confidence            568999999865  33445567789999999987644 4 66666666665543  245788999999985

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=93.51  E-value=0.037  Score=40.29  Aligned_cols=27  Identities=15%  Similarity=0.139  Sum_probs=23.3

Q ss_pred             CCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390         31 GLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus        31 ~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +.+++++||++|.||+++|..+++.+.
T Consensus       139 ~~~~~~~SA~~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          139 GHALIRLSARTGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             TEEEEECCTTTCTTHHHHHHHHHHHC-
T ss_pred             CCceEEEeCCCCCCHHHHHHHHHHHhh
Confidence            457899999999999999999988763

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=93.14  E-value=0.079  Score=39.49  Aligned_cols=26  Identities=23%  Similarity=0.342  Sum_probs=19.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAR   28 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~   28 (245)
                      +|+++||||+|+.+  .++.+++..++.
T Consensus       127 ~piilv~NK~Dl~~--~~~~~~~~~~~~  152 (198)
T 1f6b_A          127 VPILILGNKIDRPE--AISEERLREMFG  152 (198)
T ss_dssp             SCEEEEEECTTSTT--CCCHHHHHHHHT
T ss_pred             CcEEEEEECCCccc--cCCHHHHHHHhC
Confidence            58999999999964  566776665543

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=92.95  E-value=0.046  Score=45.34  Aligned_cols=58  Identities=21%  Similarity=0.215  Sum_probs=43.1

Q ss_pred             CeEEEEeecCCCc--cC-CCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLD--AR-REVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~--~~-~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      .|+++|+||.|..  +. +....+....+++..+..++++||+...++.+++..-...+++
T Consensus       202 KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~~~~~~~l~  262 (368)
T 2dby_A          202 KPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSGEEARELLA  262 (368)
T ss_dssp             SCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCHHHHHHHHH
T ss_pred             CCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhchHHHHHHHH
Confidence            3899999999842  21 1234566788888889999999999999998887765444443

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=92.94  E-value=0.029  Score=41.78  Aligned_cols=14  Identities=21%  Similarity=0.007  Sum_probs=12.0

Q ss_pred             CeEEEEeecCCCcc
Q psy13390          1 MVIMLIGNKSDLDA   14 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~   14 (245)
                      +|++|||||+||.+
T Consensus       130 ~piilv~nK~Dl~~  143 (196)
T 3llu_A          130 MNFEVFIHKVDGLS  143 (196)
T ss_dssp             CEEEEEEECGGGSC
T ss_pred             CcEEEEEeccccCc
Confidence            58999999999753

>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}

Probab=92.89  E-value=0.97  Score=34.46  Aligned_cols=87  Identities=10%  Similarity=0.072  Sum_probs=57.9

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHH
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEE  192 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~  192 (245)
                      .+.+.++|+++..  .......+..+|.+++++..+ ..++..+...++.+.....+...+-+|.|+.+...  ....+ 
T Consensus       118 ~yD~viiD~p~~~--~~~~~~~l~~ad~viiv~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~~--~~~~~-  191 (245)
T 3ea0_A          118 FYDYIIVDFGASI--DHVGVWVLEHLDELCIVTTPS-LQSLRRAGQLLKLCKEFEKPISRIEIILNRADTNS--RITSD-  191 (245)
T ss_dssp             HCSEEEEEEESSC--CTTHHHHGGGCSEEEEEECSS-HHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSCT--TSCHH-
T ss_pred             hCCEEEEeCCCCC--chHHHHHHHHCCEEEEEecCc-HHHHHHHHHHHHHHHHhCCCccceEEEEecCCCCC--CCCHH-
Confidence            4568999998754  224455788899999999865 66777777777777655433456788999998532  23333 


Q ss_pred             HHHHHHHcCCcEEEe
Q psy13390        193 GEVFAREHGLVFMET  207 (245)
Q Consensus       193 ~~~~~~~~~~~~~~~  207 (245)
                        .+....+.+++.+
T Consensus       192 --~~~~~~~~~v~~~  204 (245)
T 3ea0_A          192 --EIEKVIGRPISKR  204 (245)
T ss_dssp             --HHHHHHTSCEEEE
T ss_pred             --HHHHHhCCCeEEE
Confidence              3334456665543

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=92.73  E-value=0.021  Score=47.92  Aligned_cols=45  Identities=24%  Similarity=0.327  Sum_probs=31.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHH---hCCcEEEecccCCCcHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFARE---HGLVFMETSAKLATNVEEAFI   50 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~~f~   50 (245)
                      .|+++|+||+|+. .    .+....+...   .+..++.+||+.+.++.+++.
T Consensus       215 kP~i~v~NK~D~~-~----~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~  262 (397)
T 1wxq_A          215 KPMVIAANKADAA-S----DEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK  262 (397)
T ss_dssp             SCEEEEEECGGGS-C----HHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred             CCEEEEEeCcccc-c----hHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence            4899999999975 1    2223333333   367899999999888876543

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=92.40  E-value=0.86  Score=34.19  Aligned_cols=66  Identities=11%  Similarity=0.010  Sum_probs=47.2

Q ss_pred             EEEEEEEcCCCh-hhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390        113 QIKLQIWDTAGQ-EAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD  183 (245)
Q Consensus       113 ~~~~~l~Dt~G~-~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  183 (245)
                      .+.+.++||++. ..  ......+..+|.+++++..+ ..++..+...+..+....  +.++.+|.|+.|..
T Consensus        67 ~yD~viiD~p~~~~~--~~~~~~l~~aD~viiv~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~  133 (209)
T 3cwq_A           67 KYQNIVIDTQARPED--EDLEALADGCDLLVIPSTPD-ALALDALMLTIETLQKLG--NNRFRILLTIIPPY  133 (209)
T ss_dssp             GCSEEEEEEECCCSS--SHHHHHHHTSSEEEEEECSS-HHHHHHHHHHHHHHHHTC--SSSEEEEECSBCCT
T ss_pred             cCCEEEEeCCCCcCc--HHHHHHHHHCCEEEEEecCC-chhHHHHHHHHHHHHhcc--CCCEEEEEEecCCc
Confidence            356889999876 32  23345778899999999865 556777777666666533  35688999999864

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=92.00  E-value=0.13  Score=37.93  Aligned_cols=24  Identities=25%  Similarity=0.325  Sum_probs=17.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVF   26 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~   26 (245)
                      +|+++||||+|+.+  .++.+++..+
T Consensus       125 ~piilv~NK~Dl~~--~~~~~~~~~~  148 (190)
T 1m2o_B          125 VPFVILGNKIDAPN--AVSEAELRSA  148 (190)
T ss_dssp             CCEEEEEECTTSTT--CCCHHHHHHH
T ss_pred             CCEEEEEECCCCcC--CCCHHHHHHH
Confidence            58999999999965  4566555433

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=91.66  E-value=0.22  Score=44.86  Aligned_cols=27  Identities=11%  Similarity=-0.095  Sum_probs=23.1

Q ss_pred             CcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390         32 LVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus        32 ~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      .+.+..||++|.|++.+++.++..+..
T Consensus       256 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPs  282 (691)
T 1dar_A          256 TPVFLGSALKNKGVQLLLDAVVDYLPS  282 (691)
T ss_dssp             EEEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred             eEEEEeecccCcCHHHHHHHHHHhCCC
Confidence            368889999999999999999887743

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=89.70  E-value=0.16  Score=44.19  Aligned_cols=46  Identities=24%  Similarity=0.113  Sum_probs=29.8

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCc-----EEEecccCCCcHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLV-----FMETSAKLATNVEEA   48 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~-----~~~~Sa~~~~~i~~~   48 (245)
                      +|+++|+||+|+....  ..+....+...++..     +...|++++.|+.++
T Consensus       135 ipiivviNK~Dl~~~~--~~~~~~~i~~~l~~~~~~~~~pi~sa~~~~Gv~dl  185 (529)
T 2h5e_A          135 TPILTFMNKLDRDIRD--PMELLDEVENELKIGCAPITWPIGCGKLFKGVYHL  185 (529)
T ss_dssp             CCEEEEEECTTSCCSC--HHHHHHHHHHHHCCEEEESEEEESCGGGCCEEEET
T ss_pred             CCEEEEEcCcCCcccc--HHHHHHHHHHHhCCCccceecceecccCcceeeeh
Confidence            5899999999986543  223345566666653     334677777666544

>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A

Probab=89.42  E-value=1.2  Score=34.58  Aligned_cols=65  Identities=11%  Similarity=0.017  Sum_probs=46.7

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSD  181 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D  181 (245)
                      .+.+.++|+++..  .......+..+|.+++++..+ ..+...+...+..+.... .+.++.+|.|+.+
T Consensus       144 ~yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~-~~s~~~~~~~~~~l~~~~-~~~~~~vv~N~~~  208 (267)
T 3k9g_A          144 KYDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAE-KWAVESLDLFNFFVRKLN-LFLPIFLIITRFK  208 (267)
T ss_dssp             TCSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESC-TTHHHHHHHHHHHHHTTT-CCCCEEEEEEEEC
T ss_pred             CCCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCC-hHHHHHHHHHHHHHHHHh-ccCCEEEEEeccc
Confidence            3568899998754  233455677799999999975 456676766666665554 4567889999984

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=89.40  E-value=0.67  Score=41.85  Aligned_cols=27  Identities=11%  Similarity=-0.015  Sum_probs=23.3

Q ss_pred             CcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390         32 LVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus        32 ~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      .+.+..||+++.|++.+++.++..+..
T Consensus       262 ~Pv~~gSa~~~~Gv~~LLd~i~~~lPs  288 (704)
T 2rdo_7          262 ILVTCGSAFKNKGVQAMLDAVIDYLPS  288 (704)
T ss_pred             eEEEEeecccCccHHHHHHHHHHHCCC
Confidence            468889999999999999999988753

>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*

Probab=89.13  E-value=2.2  Score=32.98  Aligned_cols=68  Identities=13%  Similarity=0.130  Sum_probs=43.7

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHH---HhhcCCCCeEE-EEEeCCCCc
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA---RQHSNSNMVIM-LIGNKSDLD  183 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~---~~~~~~~~pii-vv~nK~Dl~  183 (245)
                      .+.+.++|+++....  .....+..+|.+++++..+. .++..+...++.+   ......+.+++ +|.|+.|..
T Consensus       111 ~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~-~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~  182 (257)
T 1wcv_1          111 GYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEY-YALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR  182 (257)
T ss_dssp             TCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESST-HHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred             CCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCch-HHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence            456899999876432  23345667999999999764 4555544444433   33223467774 899999853

>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}

Probab=88.51  E-value=2.2  Score=34.99  Aligned_cols=123  Identities=9%  Similarity=0.035  Sum_probs=57.3

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-----------------CCC-----
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-----------------NSN-----  170 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-----------------~~~-----  170 (245)
                      .+.+.|+||+..-  .......+..||.+|++...+ ..++..+...+..+....                 .++     
T Consensus       153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~-~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  229 (361)
T 3pg5_A          153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATD-LFSFHAFGNLARWFDAWVTQYAEIHEGNMAEWKKYSADVEAKT  229 (361)
T ss_dssp             CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSTHHHHT
T ss_pred             CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCC-hHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCccccccc
Confidence            4668999998653  344455677799999999875 555554444333322211                 101     


Q ss_pred             ------------Ce-EEEEEeCCCCccCcc------cC---HHH-----------------------------HHHHHHH
Q psy13390        171 ------------MV-IMLIGNKSDLDARRE------VK---KEE-----------------------------GEVFARE  199 (245)
Q Consensus       171 ------------~p-iivv~nK~Dl~~~~~------~~---~~~-----------------------------~~~~~~~  199 (245)
                                  .. +=+|.|+.|......      ..   .+.                             ....++.
T Consensus       230 ~~~~~~g~~~~~l~~lG~v~n~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i~~~~s~~~~aq~  309 (361)
T 3pg5_A          230 RPLRLGGFDGEGLRYLGYTTLEYVKRRANGQEQLVGAFERFRGRFAAEAERISNSLSKHSNSTLLGHVPHMHSMPATAQD  309 (361)
T ss_dssp             SSSCTTSSSSSCCEEEEEEECC-----------------TTHHHHHHHHHHHHHHSCSSCCCCEEEECC-----------
T ss_pred             cccccccccccccceeeEEEEcchhhcCCCchhhhHHHHHHHHHHHHHHHhccccccCCCCccccccCCchhhHHHHHHH
Confidence                        22 346788988653221      00   011                             1122344


Q ss_pred             cCCcEEEeccCC---------CCCHHHHHHHHHHHHHHHHhcCCCCCC
Q psy13390        200 HGLVFMETSAKL---------ATNVEEAFIDTAKEIYEKIQEGVFDIT  238 (245)
Q Consensus       200 ~~~~~~~~Sa~~---------~~~i~~~~~~i~~~i~~~~~~~~~~~~  238 (245)
                      .+.|+|.+++.+         ..+..+.|..+...+.+......++-.
T Consensus       310 ~~~Pi~~l~~~~~~~g~~~~~~~~~~~~~~~la~~i~~~~~~~~~~~~  357 (361)
T 3pg5_A          310 VHAPIMELSSSDRVRGAQINQRNAYAEKINSVAANVYKALFPNELEHH  357 (361)
T ss_dssp             -----------------------CCHHHHHHHHHHHHHHHCCCC----
T ss_pred             HCCCeEECchhcCCccHHHHHHHHHHHHHHHHHHHHHHHhCcchhhhc
Confidence            567888888755         558889999999999998877665543

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=88.27  E-value=0.13  Score=37.73  Aligned_cols=14  Identities=14%  Similarity=0.102  Sum_probs=12.1

Q ss_pred             CeEEEEeecCCCcc
Q psy13390          1 MVIMLIGNKSDLDA   14 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~   14 (245)
                      +|+++|+||+|+.+
T Consensus       134 ~p~i~v~nK~Dl~~  147 (195)
T 3pqc_A          134 IPFTIVLTKMDKVK  147 (195)
T ss_dssp             CCEEEEEECGGGSC
T ss_pred             CCEEEEEEChhcCC
Confidence            58999999999864

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=87.79  E-value=0.69  Score=39.03  Aligned_cols=66  Identities=14%  Similarity=0.054  Sum_probs=33.0

Q ss_pred             EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCH--HHHHHHHHHcCCcEEEeccC
Q psy13390        140 GALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKK--EEGEVFAREHGLVFMETSAK  210 (245)
Q Consensus       140 ~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~  210 (245)
                      +++|+.|+..+.+-.++ .+   +.... .++|+|+|.||+|.....++..  ..........|++++.+|.-
T Consensus       151 ~v~fI~d~~~~l~~~Di-ei---lk~L~-~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~  218 (427)
T 2qag_B          151 CLYFIAPTGHSLKSLDL-VT---MKKLD-SKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD  218 (427)
T ss_dssp             EEEEECCCC---CHHHH-HH---HHHTC-SCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred             EEEEEeCCCCCCCHHHH-HH---HHHHh-hCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence            36666776544333332 22   22222 5789999999999754332111  11111123357788888753

>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10

Probab=87.60  E-value=3.6  Score=31.68  Aligned_cols=82  Identities=10%  Similarity=-0.063  Sum_probs=51.8

Q ss_pred             EEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHH
Q psy13390        114 IKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEG  193 (245)
Q Consensus       114 ~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~  193 (245)
                      +.+.|+|+++...  ......+..+|.+|+++..+ ..+...+...+..+....  ..++-+|.|+.+.....    ...
T Consensus       111 yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~~~~----~~~  181 (263)
T 1hyq_A          111 TDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPE-ISSITDGLKTKIVAERLG--TKVLGVVVNRITTLGIE----MAK  181 (263)
T ss_dssp             CSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CEEEEEEEEEECTTTHH----HHH
T ss_pred             CCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCC-hhHHHHHHHHHHHHHhcC--CCeeEEEEccCCccccc----chH
Confidence            5689999987543  33445677899999999865 556677766666665542  23556889999853211    233


Q ss_pred             HHHHHHcCCcE
Q psy13390        194 EVFAREHGLVF  204 (245)
Q Consensus       194 ~~~~~~~~~~~  204 (245)
                      ..+....+.++
T Consensus       182 ~~~~~~~~~~~  192 (263)
T 1hyq_A          182 NEIEAILEAKV  192 (263)
T ss_dssp             HHHHHHTTSCE
T ss_pred             HHHHHHhCCCe
Confidence            34444456553

>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*

Probab=87.35  E-value=4  Score=30.79  Aligned_cols=66  Identities=11%  Similarity=-0.008  Sum_probs=46.0

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD  183 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  183 (245)
                      .+.+.++|+++...  ......+..+|.++++...+ ..++..+...+..+.+..  ...+-+|.|+.+..
T Consensus       111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~-~~~~~~~~~~~~~l~~~~--~~~~~vv~N~~~~~  176 (237)
T 1g3q_A          111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKKAG--LAILGFVLNRYGRS  176 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHHTT--CEEEEEEEEEETSC
T ss_pred             cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCC-cccHHHHHHHHHHHHhCC--CceEEEEEecCCcc
Confidence            35688999987543  33455778999999999865 556777777666665542  23456789999854

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=87.21  E-value=1.2  Score=40.21  Aligned_cols=27  Identities=7%  Similarity=-0.102  Sum_probs=22.8

Q ss_pred             cEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390         33 VFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus        33 ~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +.+..||.++.|++.+++.+++.+...
T Consensus       255 Pv~~gSA~~~~Gv~~LLd~i~~~lPsP  281 (693)
T 2xex_A          255 PVLCGTAFKNKGVQLMLDAVIDYLPSP  281 (693)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHSCCG
T ss_pred             eEEEeecccCcCHHHHHHHHHHHCCCc
Confidence            578899999999999999998887543

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=86.62  E-value=0.18  Score=45.78  Aligned_cols=55  Identities=16%  Similarity=0.059  Sum_probs=35.3

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHH--HHHHhC-CcEEEecccCCCcHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEV--FAREHG-LVFMETSAKLATNVEEAFIDTAKE   55 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~~f~~l~~~   55 (245)
                      .|+++|.||+|+.+...........  +....+ ...+.+||++|.|+++++..+.+.
T Consensus       218 ~pvIlVlNKiDlv~~~~~~~~il~~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          218 QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             SSEEEEEECTTSSCTTCCSHHHHTTCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             CCEEEEEeCcccCCcchhhHHHHHHHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence            4899999999987544332211110  000012 245679999999999999888763

>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*

Probab=86.06  E-value=2  Score=33.33  Aligned_cols=91  Identities=15%  Similarity=0.164  Sum_probs=52.5

Q ss_pred             eEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCCcc----Cc
Q psy13390        112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIM-LIGNKSDLDA----RR  186 (245)
Q Consensus       112 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~----~~  186 (245)
                      ..+.+.|+||++...........+..+|.+|++...+ ..+...+...++.+...   +.+++ +|.|+.|...    .+
T Consensus       127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~---~~~~~gvV~N~~~~~~~~~~~~  202 (262)
T 2ph1_A          127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQ-ELTAVIVEKAINMAEET---NTSVLGLVENMSYFVCPNCGHK  202 (262)
T ss_dssp             CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSS-SCCHHHHHHHHHHHHTT---TCCEEEEEETTCCEECTTTCCE
T ss_pred             cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCc-cchHHHHHHHHHHHHhC---CCCEEEEEECCCccCCcccccc
Confidence            3467899999875432112222233689999999876 34566666666655443   46766 8999987421    11


Q ss_pred             -cc-CHHHHHHHHHHcCCcEEE
Q psy13390        187 -EV-KKEEGEVFAREHGLVFME  206 (245)
Q Consensus       187 -~~-~~~~~~~~~~~~~~~~~~  206 (245)
                       .+ .......+....+.+++.
T Consensus       203 ~~~~~~~~~~~~~~~~g~~~~~  224 (262)
T 2ph1_A          203 SYIFGEGKGESLAKKYNIGFFT  224 (262)
T ss_dssp             ECTTCCCCHHHHHHHTTCSEEE
T ss_pred             cccccccHHHHHHHHcCCCeEE
Confidence             11 111234455567777553

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=85.78  E-value=0.41  Score=35.24  Aligned_cols=15  Identities=27%  Similarity=0.550  Sum_probs=12.8

Q ss_pred             CeEEEEeecCCCccC
Q psy13390          1 MVIMLIGNKSDLDAR   15 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~   15 (245)
                      +|+++|+||+|+.+.
T Consensus       131 ~piilv~NK~Dl~~~  145 (192)
T 2b6h_A          131 AVLLVFANKQDMPNA  145 (192)
T ss_dssp             CEEEEEEECTTSTTC
T ss_pred             CeEEEEEECCCCCCC
Confidence            589999999999653

>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*

Probab=85.77  E-value=1.9  Score=33.06  Aligned_cols=67  Identities=9%  Similarity=-0.011  Sum_probs=46.8

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC------CCCeEEEEEeCCCC
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN------SNMVIMLIGNKSDL  182 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~------~~~piivv~nK~Dl  182 (245)
                      .+.+.++|+++...  ......+..+|.++++++.+ ..++..+...+..+.....      ....+.+|.|++|.
T Consensus       113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~  185 (260)
T 3q9l_A          113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPE-VSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNP  185 (260)
T ss_dssp             TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSS-HHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECH
T ss_pred             CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCC-hhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCc
Confidence            35689999987532  34556778999999999865 5677777766666544321      12467889999984

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=84.46  E-value=8.7  Score=32.18  Aligned_cols=107  Identities=14%  Similarity=0.134  Sum_probs=58.2

Q ss_pred             EEEEEcCCChhhh----hhhh-HhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc--c---
Q psy13390        115 KLQIWDTAGQEAF----RSIT-RSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD--A---  184 (245)
Q Consensus       115 ~~~l~Dt~G~~~~----~~~~-~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~--~---  184 (245)
                      .+.+||++|....    .... ..-+...+.+++ ++...+ .-+++ .+...+..   .+.|+++|.||.|+.  +   
T Consensus       121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~~-~kqrv-~la~aL~~---~~~p~~lV~tkpdlllLDEPt  194 (413)
T 1tq4_A          121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATRF-KKNDI-DIAKAISM---MKKEFYFVRTKVDSDITNEAD  194 (413)
T ss_dssp             TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSCC-CHHHH-HHHHHHHH---TTCEEEEEECCHHHHHHHHHT
T ss_pred             CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCCc-cHHHH-HHHHHHHh---cCCCeEEEEecCcccccCccc
Confidence            4789999985321    1111 122444566665 776521 11111 11222222   247999999999963  0   


Q ss_pred             --CcccCHH----HHHHHH----HHcC---CcEEEecc--CCCCCHHHHHHHHHHHHH
Q psy13390        185 --RREVKKE----EGEVFA----REHG---LVFMETSA--KLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       185 --~~~~~~~----~~~~~~----~~~~---~~~~~~Sa--~~~~~i~~~~~~i~~~i~  227 (245)
                        -......    ..+.+.    ...+   -.++.+|+  .++.|++++.+.+.+.+.
T Consensus       195 sgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lp  252 (413)
T 1tq4_A          195 GEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  252 (413)
T ss_dssp             TCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             ccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCc
Confidence              0111222    223332    1222   24788999  777789999998887763

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=84.23  E-value=2.7  Score=35.39  Aligned_cols=92  Identities=21%  Similarity=0.140  Sum_probs=51.8

Q ss_pred             EEEEEEcCCChhhhhh--hhH----hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcc
Q psy13390        114 IKLQIWDTAGQEAFRS--ITR----SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARRE  187 (245)
Q Consensus       114 ~~~~l~Dt~G~~~~~~--~~~----~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~  187 (245)
                      +.+.|+||+|......  +..    ...-.+|.+++|+|+...   ++.......+....  + ..-+|.||.|....  
T Consensus       181 ~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg---q~av~~a~~f~~~l--~-i~GVIlTKlD~~~~--  252 (425)
T 2ffh_A          181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG---QEALSVARAFDEKV--G-VTGLVLTKLDGDAR--  252 (425)
T ss_dssp             CSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHT--C-CCEEEEESGGGCSS--
T ss_pred             CCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch---HHHHHHHHHHHhcC--C-ceEEEEeCcCCccc--
Confidence            4588999999743321  111    122368999999998643   22223233333221  1 23568899996422  


Q ss_pred             cCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q psy13390        188 VKKEEGEVFAREHGLVFMETSAKLATNVEE  217 (245)
Q Consensus       188 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  217 (245)
                        ...........+.|+.++.  +|+.+++
T Consensus       253 --~g~alsi~~~~g~PI~flg--~Ge~~~d  278 (425)
T 2ffh_A          253 --GGAALSARHVTGKPIYFAG--VSEKPEG  278 (425)
T ss_dssp             --CHHHHHHHHHHCCCEEEEE--CSSSGGG
T ss_pred             --HHHHHHHHHHHCCCEEEEe--CCCChhh
Confidence              1234455666788977765  3445554

>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*

Probab=84.03  E-value=3.2  Score=31.46  Aligned_cols=64  Identities=11%  Similarity=0.008  Sum_probs=45.0

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSD  181 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D  181 (245)
                      .+.+.++||++....  .....+..+|.+++++..+ ..++..+....+.+....  -..+.+|.|+.+
T Consensus       131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~~~--~~~~~~v~N~~~  194 (254)
T 3kjh_A          131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPN-LNSIKTGLNIEKLAGDLG--IKKVRYVINKVR  194 (254)
T ss_dssp             CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSS-HHHHHHHHHHHHHHHHHT--CSCEEEEEEEEC
T ss_pred             CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCC-HHHHHHHHHHHHHHHHcC--CccEEEEEeCCC
Confidence            456899999875432  4455778999999999875 566777666655444443  245778899988

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=83.29  E-value=1.9  Score=34.97  Aligned_cols=92  Identities=14%  Similarity=0.115  Sum_probs=54.1

Q ss_pred             EEEEEcCCChhhhhh-----hhH-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCccc
Q psy13390        115 KLQIWDTAGQEAFRS-----ITR-SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREV  188 (245)
Q Consensus       115 ~~~l~Dt~G~~~~~~-----~~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~  188 (245)
                      .+.++||+|......     +.. ...-..|-.++++|+...   +++...+..+....  ++ -+++.||.|....   
T Consensus       213 d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~---~~~~~~~~~~~~~~--~i-t~iilTKlD~~a~---  283 (328)
T 3e70_C          213 DVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG---NAIVEQARQFNEAV--KI-DGIILTKLDADAR---  283 (328)
T ss_dssp             SEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT---THHHHHHHHHHHHS--CC-CEEEEECGGGCSC---
T ss_pred             hhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH---HHHHHHHHHHHHhc--CC-CEEEEeCcCCccc---
Confidence            356799999744322     111 012247889999998654   23333334443322  22 2677899996321   


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q psy13390        189 KKEEGEVFAREHGLVFMETSAKLATNVEEA  218 (245)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  218 (245)
                       .-.........+.|+.+++  +|++++++
T Consensus       284 -~G~~l~~~~~~~~pi~~i~--~Ge~v~dl  310 (328)
T 3e70_C          284 -GGAALSISYVIDAPILFVG--VGQGYDDL  310 (328)
T ss_dssp             -CHHHHHHHHHHTCCEEEEE--CSSSTTCE
T ss_pred             -hhHHHHHHHHHCCCEEEEe--CCCCcccc
Confidence             2334556667789988887  78887654

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=83.23  E-value=0.41  Score=35.03  Aligned_cols=16  Identities=19%  Similarity=0.380  Sum_probs=13.3

Q ss_pred             CeEEEEeecCCCccCC
Q psy13390          1 MVIMLIGNKSDLDARR   16 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~   16 (245)
                      +|+++|+||+|+...+
T Consensus       135 ~p~i~v~nK~Dl~~~~  150 (195)
T 1svi_A          135 IPVIVIATKADKIPKG  150 (195)
T ss_dssp             CCEEEEEECGGGSCGG
T ss_pred             CCEEEEEECcccCChH
Confidence            5899999999987544

>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10

Probab=83.20  E-value=14  Score=28.39  Aligned_cols=87  Identities=13%  Similarity=0.121  Sum_probs=52.0

Q ss_pred             EEEEEEcCCChhhhhhhh-HhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeE-EEEEeCCCCccCcccCH
Q psy13390        114 IKLQIWDTAGQEAFRSIT-RSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNMVI-MLIGNKSDLDARREVKK  190 (245)
Q Consensus       114 ~~~~l~Dt~G~~~~~~~~-~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~pi-ivv~nK~Dl~~~~~~~~  190 (245)
                      +.+.|+||+|......+. ......+|.++++...+ ..++..+...+..+..... .+.++ -+|.|+.+..    ...
T Consensus       116 yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~~----~~~  190 (269)
T 1cp2_A          116 LDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGE-MMALYAANNISKGIQKYAKSGGVRLGGIICNSRKVA----NEY  190 (269)
T ss_dssp             CSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSS-HHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSSS----CCH
T ss_pred             CCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCc-hhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCcc----hhH
Confidence            558999998854322221 22235799999999864 5667776666666655432 24554 5789998732    123


Q ss_pred             HHHHHHHHHcCCcEE
Q psy13390        191 EEGEVFAREHGLVFM  205 (245)
Q Consensus       191 ~~~~~~~~~~~~~~~  205 (245)
                      +....+....+.+++
T Consensus       191 ~~~~~l~~~~~~~v~  205 (269)
T 1cp2_A          191 ELLDAFAKELGSQLI  205 (269)
T ss_dssp             HHHHHHHHHHTCCEE
T ss_pred             HHHHHHHHHcCCccc
Confidence            344445555565543

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=81.79  E-value=2.4  Score=37.02  Aligned_cols=26  Identities=15%  Similarity=-0.193  Sum_probs=22.5

Q ss_pred             cEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390         33 VFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus        33 ~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +.+..||+.+.||+.+++.+++.+..
T Consensus       270 PV~~gSA~~~~Gv~~LLd~iv~~~Ps  295 (548)
T 3vqt_A          270 PVFFGSAINNFGVREMLDMFVEFAPG  295 (548)
T ss_dssp             EEEECBGGGTBSHHHHHHHHHHHSCC
T ss_pred             eeeecccccCcCHHHHHHHHHHhCCC
Confidence            57788999999999999999887753

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=81.67  E-value=1.3  Score=36.55  Aligned_cols=41  Identities=17%  Similarity=0.146  Sum_probs=30.9

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccC
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL   41 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~   41 (245)
                      .|+++|+||.|..-......+....++...+..++.+||+.
T Consensus       200 KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~  240 (363)
T 1jal_A          200 KPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI  240 (363)
T ss_dssp             SCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred             CcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence            38999999999643223335666778888899999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	3e-40
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	8e-11
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-37
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	6e-10
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	3e-36
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	9e-12
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	4e-35
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	2e-17
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	8e-35
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	1e-13
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	4e-33
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	6e-12
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-33
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	2e-08
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	7e-33
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-11
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	3e-32
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-07
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	3e-32
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	2e-06
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-31
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	5e-09
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	4e-30
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	1e-11
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	8e-27
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-10
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	1e-25
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	2e-09
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	4e-25
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-09
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	5e-23
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	2e-14
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	1e-21
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	4e-12
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	7e-21
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	4e-10
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	8e-21
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	1e-10
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	1e-20
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	8e-09
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-20
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	1e-08
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	8e-20
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	9e-09
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-19
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	3e-06
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	1e-19
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-11
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-19
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	2e-06
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-19
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	3e-11
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	3e-19
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-09
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	3e-19
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	1e-09
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	9e-19
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	1e-08
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	2e-18
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	8e-11
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	3e-18
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	5e-09
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	4e-18
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	8e-06
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	6e-17
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	2e-07
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	3e-16
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	7e-09
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	5e-16
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	9e-07
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	5e-16
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	5e-07
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	5e-16
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-09
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	6e-16
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	7e-08
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	3e-15
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	2e-07
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	8e-15
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	9e-12
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	6e-14
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-07
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	6e-13
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	1e-08
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	9e-13
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	2e-04
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-12
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	3e-08
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	9e-12
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	6e-09
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	2e-11
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	1e-09
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-11
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-09
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	7e-11
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-06
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	2e-10
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	8e-10
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	9e-07
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	4e-08
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	7e-07
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	2e-06
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	4e-06

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  134 bits (338), Expect = 3e-40
 Identities = 66/134 (49%), Positives = 99/134 (73%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G++F  R I +DGK+IKLQIWDTAGQE FR+IT +YYRGA G +LVYDIT  ++F+++  
Sbjct: 40  GIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRN 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W+ +  +H+++++  M++GNK D++ +R+V KE GE  A ++G+ FMETSAK   NVE A
Sbjct: 100 WIRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENA 159

Query: 219 FIDTAKEIYEKIQE 232
           F   A++I  K+ +
Sbjct: 160 FFTLARDIKAKMDK 173

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.1 bits (137), Expect = 8e-11
 Identities = 28/62 (45%), Positives = 42/62 (67%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           +  M++GNK D++ +R+V KE GE  A ++G+ FMETSAK   NVE AF   A++I  K+
Sbjct: 112 VEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM 171

Query: 61  QE 62
            +
Sbjct: 172 DK 173

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  127 bits (321), Expect = 1e-37
 Identities = 64/132 (48%), Positives = 90/132 (68%), Gaps = 1/132 (0%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G++F  + + I+GK++KLQIWDTAGQE FR+IT +YYRGA G +LVYDIT   TF ++  
Sbjct: 36  GIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQ 95

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W +   +H+N    ++L+GNKSD++ R     ++GE  A+E G+ F+E+SAK   NV E 
Sbjct: 96  WFKTVNEHANDEAQLLLVGNKSDMETRVVT-ADQGEALAKELGIPFIESSAKNDDNVNEI 154

Query: 219 FIDTAKEIYEKI 230
           F   AK I EKI
Sbjct: 155 FFTLAKLIQEKI 166

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.4 bits (130), Expect = 6e-10
 Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
             ++L+GNKSD++ R     ++GE  A+E G+ F+E+SAK   NV E F   AK I EKI
Sbjct: 108 AQLLLVGNKSDMETRVVTA-DQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEKI 166

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  124 bits (311), Expect = 3e-36
 Identities = 60/129 (46%), Positives = 92/129 (71%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G++F  +++ +DG ++KLQ+WDTAGQE FRS+T +YYR A   LL+YD+T + +F+++  
Sbjct: 41  GIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQA 100

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL +  +++  ++ +ML+GNK D    R VK+E+GE  A+E+GL FMETSAK   NV+ A
Sbjct: 101 WLTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 160

Query: 219 FIDTAKEIY 227
           F   AKE+ 
Sbjct: 161 FTAIAKELK 169

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.5 bits (143), Expect = 9e-12
 Identities = 30/57 (52%), Positives = 39/57 (68%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
           + +ML+GNK D    R VK+E+GE  A+E+GL FMETSAK   NV+ AF   AKE+ 
Sbjct: 113 VALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK 169

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  121 bits (304), Expect = 4e-35
 Identities = 113/130 (86%), Positives = 125/130 (96%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ 165
           M+ IDGKQIKLQIWDTAGQE+FRSITRSYYRGAAGALLVYDITRRETFNHLT+WLEDARQ
Sbjct: 44  MVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQ 103

Query: 166 HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 225
           HS+SNMVIMLIGNKSDL++RR+VK+EEGE FAREHGL+FMETSAK A NVEEAFI+TAKE
Sbjct: 104 HSSSNMVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKE 163

Query: 226 IYEKIQEGVF 235
           IY KIQ+G+F
Sbjct: 164 IYRKIQQGLF 173

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 75.3 bits (184), Expect = 2e-17
 Identities = 53/65 (81%), Positives = 61/65 (93%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           MVIMLIGNKSDL++RR+VK+EEGE FAREHGL+FMETSAK A NVEEAFI+TAKEIY KI
Sbjct: 109 MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKI 168

Query: 61  QEGVF 65
           Q+G+F
Sbjct: 169 QQGLF 173

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  120 bits (301), Expect = 8e-35
 Identities = 85/129 (65%), Positives = 109/129 (84%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEFG R+I + G++IKLQIWDTAGQE FR++TRSYYRGAAGAL+VYDITRR T+NHL++
Sbjct: 38  GVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSS 97

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL DAR  +N N VI+LIGNK+DL+A+R+V  EE + FA E+GL+F+E SAK   NVE+A
Sbjct: 98  WLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 157

Query: 219 FIDTAKEIY 227
           F++ AK+IY
Sbjct: 158 FLEAAKKIY 166

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (156), Expect = 1e-13
 Identities = 33/57 (57%), Positives = 46/57 (80%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
            VI+LIGNK+DL+A+R+V  EE + FA E+GL+F+E SAK   NVE+AF++ AK+IY
Sbjct: 110 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKIY 166

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  116 bits (291), Expect = 4e-33
 Identities = 74/135 (54%), Positives = 95/135 (70%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GVEF  R I +DGK IK QIWDTAGQE +R IT +YYRGA GALLVYDI +  T+ ++  
Sbjct: 38  GVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVER 97

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL++ R H++SN+VIML+GNKSDL   R V  +E   FA ++ L F+ETSA  +TNVEEA
Sbjct: 98  WLKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEA 157

Query: 219 FIDTAKEIYEKIQEG 233
           F +   EIY  + + 
Sbjct: 158 FKNILTEIYRIVSQK 172

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.3 bits (145), Expect = 6e-12
 Identities = 31/63 (49%), Positives = 41/63 (65%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           +VIML+GNKSDL   R V  +E   FA ++ L F+ETSA  +TNVEEAF +   EIY  +
Sbjct: 110 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIV 169

Query: 61  QEG 63
            + 
Sbjct: 170 SQK 172

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score =  116 bits (290), Expect = 4e-33
 Identities = 58/131 (44%), Positives = 79/131 (60%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G++F  + I  + K+IKLQIWDTAGQE +R+IT +YYRGA G +L+YDIT  E+FN +  
Sbjct: 39  GIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQD 98

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W    + +S  N  ++L+GNK D++  R V  E G   A   G  F E SAK   NV++ 
Sbjct: 99  WSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQT 158

Query: 219 FIDTAKEIYEK 229
           F      I EK
Sbjct: 159 FERLVDVICEK 169

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 50.3 bits (119), Expect = 2e-08
 Identities = 22/59 (37%), Positives = 29/59 (49%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
             ++L+GNK D++  R V  E G   A   G  F E SAK   NV++ F      I EK
Sbjct: 111 AQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICEK 169

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (289), Expect = 7e-33
 Identities = 83/132 (62%), Positives = 102/132 (77%)

Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           FG+++I + GK +KLQIWDTAGQE FRS+TRSYYRGAAGALLVYDIT RET+N LT WL 
Sbjct: 42  FGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLT 101

Query: 162 DARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFID 221
           DAR  ++ N+VI+L GNK DLDA REV   E   FA+E+ L+F+ETSA    NVEEAF+ 
Sbjct: 102 DARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQ 161

Query: 222 TAKEIYEKIQEG 233
            A++I  KI+ G
Sbjct: 162 CARKILNKIESG 173

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (138), Expect = 4e-11
 Identities = 34/63 (53%), Positives = 44/63 (69%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           +VI+L GNK DLDA REV   E   FA+E+ L+F+ETSA    NVEEAF+  A++I  KI
Sbjct: 111 IVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKI 170

Query: 61  QEG 63
           + G
Sbjct: 171 ESG 173

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  114 bits (285), Expect = 3e-32
 Identities = 61/139 (43%), Positives = 92/139 (66%)

Query: 91  SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR 150
             G  +  GV+F  + + I+G+++KLQIWDTAGQE FRSIT+SYYR A   +L YDIT  
Sbjct: 31  PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCE 90

Query: 151 ETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK 210
           E+F  L  WL +  Q++++ ++ +L+GNK DL  RREV ++  E F+    + ++ETSAK
Sbjct: 91  ESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAK 150

Query: 211 LATNVEEAFIDTAKEIYEK 229
            + NVE+ F+D A  +  +
Sbjct: 151 ESDNVEKLFLDLACRLISE 169

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (112), Expect = 2e-07
 Identities = 23/59 (38%), Positives = 38/59 (64%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           ++ +L+GNK DL  RREV ++  E F+    + ++ETSAK + NVE+ F+D A  +  +
Sbjct: 111 VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE 169

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  114 bits (286), Expect = 3e-32
 Identities = 62/142 (43%), Positives = 100/142 (70%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  + + +DGK +KLQIWDTAGQE FR+IT SYYRG+ G ++VYD+T +E+FN +  
Sbjct: 40  GVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKM 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL++  +++ S ++ +L+GNK DL  +R V+ +  + FA  + + F+ETSA  +TNVE+A
Sbjct: 100 WLQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDA 159

Query: 219 FIDTAKEIYEKIQEGVFDITNE 240
           F+  A++I E + +   + T +
Sbjct: 160 FLTMARQIKESMSQQNLNETTQ 181

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 25/70 (35%), Positives = 45/70 (64%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           ++ +L+GNK DL  +R V+ +  + FA  + + F+ETSA  +TNVE+AF+  A++I E +
Sbjct: 112 VLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM 171

Query: 61  QEGVFDITNE 70
            +   + T +
Sbjct: 172 SQQNLNETTQ 181

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  111 bits (279), Expect = 2e-31
 Identities = 57/130 (43%), Positives = 83/130 (63%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           GV+F  + I++DG + KL IWDTAGQE FR++T SYYRGA G +LVYD+TRR+TF  L  
Sbjct: 41  GVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDN 100

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           WL +   +   N ++ ++         REV + EG  FAR+H ++F+E SAK    V+ A
Sbjct: 101 WLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCA 160

Query: 219 FIDTAKEIYE 228
           F +  ++I +
Sbjct: 161 FEELVEKIIQ 170

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.2 bits (124), Expect = 5e-09
 Identities = 18/58 (31%), Positives = 32/58 (55%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
            ++ ++         REV + EG  FAR+H ++F+E SAK    V+ AF +  ++I +
Sbjct: 113 DIVNMLVGNKIDKENREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQ 170

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  108 bits (271), Expect = 4e-30
 Identities = 44/127 (34%), Positives = 79/127 (62%), Gaps = 1/127 (0%)

Query: 107 ITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH 166
            +    ++ LQ+WDTAGQE FRS+T +++R A G LL++D+T +++F ++  W+   + +
Sbjct: 57  SSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQAN 116

Query: 167 SNSNMV-IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 225
           +      I+LIGNK+DL  +REV + +    A ++G+ + ETSA    NVE+A       
Sbjct: 117 AYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDL 176

Query: 226 IYEKIQE 232
           I +++++
Sbjct: 177 IMKRMEQ 183

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.9 bits (144), Expect = 1e-11
 Identities = 22/61 (36%), Positives = 37/61 (60%)

Query: 2   VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ 61
            I+LIGNK+DL  +REV + +    A ++G+ + ETSA    NVE+A       I ++++
Sbjct: 123 DIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME 182

Query: 62  E 62
           +
Sbjct: 183 Q 183

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.6 bits (247), Expect = 8e-27
 Identities = 55/121 (45%), Positives = 82/121 (67%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ 165
            + ++ + I+LQ+WDTAGQE FRS+  SY R +A A++VYDIT   +F   T W++D R 
Sbjct: 41  TMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRT 100

Query: 166 HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 225
              S+++IML+GNK+DL  +R+V  EEGE  A+E  ++F+ETSAK   NV++ F   A  
Sbjct: 101 ERGSDVIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAA 160

Query: 226 I 226
           +
Sbjct: 161 L 161

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.5 bits (135), Expect = 1e-10
 Identities = 26/56 (46%), Positives = 39/56 (69%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           ++IML+GNK+DL  +R+V  EEGE  A+E  ++F+ETSAK   NV++ F   A  +
Sbjct: 106 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL 161

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 96.6 bits (239), Expect = 1e-25
 Identities = 48/124 (38%), Positives = 74/124 (59%)

Query: 105 RMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDAR 164
           + + I GK++ L IWDTAGQE F ++   YYR + GA+LVYDIT  ++F  +  W+++ R
Sbjct: 43  KKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELR 102

Query: 165 QHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK 224
           +   + + + ++GNK DL+  R V  +E E +A   G     TSAK    +EE F+D  K
Sbjct: 103 KMLGNEICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCK 162

Query: 225 EIYE 228
            + E
Sbjct: 163 RMIE 166

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 2e-09
 Identities = 21/58 (36%), Positives = 31/58 (53%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
           + + ++GNK DL+  R V  +E E +A   G     TSAK    +EE F+D  K + E
Sbjct: 109 ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE 166

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.5 bits (236), Expect = 4e-25
 Identities = 54/130 (41%), Positives = 85/130 (65%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G  F  + + +D   +K +IWDTAGQE + S+   YYRGA  A++VYDIT  E+F     
Sbjct: 40  GAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKN 99

Query: 159 WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
           W+++ ++ ++ N+VI L GNK+DL  +R V  +E + +A ++ L+FMETSAK + NV E 
Sbjct: 100 WVKELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 159

Query: 219 FIDTAKEIYE 228
           F+  AK++ +
Sbjct: 160 FMAIAKKLPK 169

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 26/58 (44%), Positives = 40/58 (68%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
           +VI L GNK+DL  +R V  +E + +A ++ L+FMETSAK + NV E F+  AK++ +
Sbjct: 112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLPK 169

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.0 bits (222), Expect = 5e-23
 Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 1/128 (0%)

Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTW 159
           +F  + I +D     L+I DTAG E F S+   Y +   G +LVY +  +++F +     
Sbjct: 38  DFYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMR 97

Query: 160 LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
            +  R      + ++L+GNK DL++ REV   EG   A E G  FMETSAK  T V+E F
Sbjct: 98  DQIIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELF 157

Query: 220 IDTAKEIY 227
            +  +++ 
Sbjct: 158 AEIVRQMN 165

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.9 bits (162), Expect = 2e-14
 Identities = 25/57 (43%), Positives = 36/57 (63%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
           + ++L+GNK DL++ REV   EG   A E G  FMETSAK  T V+E F +  +++ 
Sbjct: 109 VPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 86.1 bits (212), Expect = 1e-21
 Identities = 45/125 (36%), Positives = 75/125 (60%), Gaps = 1/125 (0%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-AR 164
            + +DG+++++ I DTAGQE + +I  +Y+R   G L V+ IT  E+F     + E   R
Sbjct: 44  KVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILR 103

Query: 165 QHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK 224
              + N+  +L+GNKSDL+ +R+V  EE +  A +  + ++ETSAK   NV++ F D  +
Sbjct: 104 VKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMR 163

Query: 225 EIYEK 229
           EI  +
Sbjct: 164 EIRAR 168

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 60.3 bits (145), Expect = 4e-12
 Identities = 23/59 (38%), Positives = 38/59 (64%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           +  +L+GNKSDL+ +R+V  EE +  A +  + ++ETSAK   NV++ F D  +EI  +
Sbjct: 110 VPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIRAR 168

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 84.3 bits (207), Expect = 7e-21
 Identities = 50/110 (45%), Positives = 73/110 (66%)

Query: 117 QIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLI 176
            IWDTAG E FR++   YYRG+A A++VYDIT+ ETF+ L  W+ + RQH   ++V+ + 
Sbjct: 56  LIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIA 115

Query: 177 GNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 226
           GNK DL   REV + + + +A     +F+ETSAK A N+ E FI+ ++ I
Sbjct: 116 GNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.0 bits (131), Expect = 4e-10
 Identities = 22/56 (39%), Positives = 35/56 (62%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           +V+ + GNK DL   REV + + + +A     +F+ETSAK A N+ E FI+ ++ I
Sbjct: 110 IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 165

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (207), Expect = 8e-21
 Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 13/137 (9%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ 165
            + +DGK + L +WDTAGQE +  +    Y     +L+ + +    +F ++        +
Sbjct: 45  NVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVR 104

Query: 166 HSNSNMVIMLIGNKSDLDARREVKKE------------EGEVFAREHGLV-FMETSAKLA 212
           H   N  I+L+G K DL   ++  ++            +G   A+E G V ++E SA   
Sbjct: 105 HHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQ 164

Query: 213 TNVEEAFIDTAKEIYEK 229
             ++  F +  + +   
Sbjct: 165 RGLKTVFDEAIRAVLCP 181

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 1e-10
 Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 13/72 (18%)

Query: 1   MVIMLIGNKSDLDARREVKKEE------------GEVFAREHGLV-FMETSAKLATNVEE 47
             I+L+G K DL   ++  ++             G   A+E G V ++E SA     ++ 
Sbjct: 110 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKT 169

Query: 48  AFIDTAKEIYEK 59
            F +  + +   
Sbjct: 170 VFDEAIRAVLCP 181

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.3 bits (207), Expect = 1e-20
 Identities = 27/145 (18%), Positives = 51/145 (35%), Gaps = 13/145 (8%)

Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWL 160
           +  A  + I G+   L ++DTAGQE +  +    Y      L+ + +    +F ++    
Sbjct: 38  DNYAVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKW 97

Query: 161 EDARQHSNSNMVIMLIGNKSDLDARREVK------------KEEGEVFARE-HGLVFMET 207
                H       +L+G + DL                    E  E  AR+   + ++E 
Sbjct: 98  VPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVEC 157

Query: 208 SAKLATNVEEAFIDTAKEIYEKIQE 232
           SA     ++  F +      E  + 
Sbjct: 158 SALTQKGLKNVFDEAILAALEPPEP 182

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 8e-09
 Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 13/75 (17%)

Query: 1   MVIMLIGNKSDLDARREVK------------KEEGEVFARE-HGLVFMETSAKLATNVEE 47
              +L+G + DL                    E  E  AR+   + ++E SA     ++ 
Sbjct: 108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKN 167

Query: 48  AFIDTAKEIYEKIQE 62
            F +      E  + 
Sbjct: 168 VFDEAILAALEPPEP 182

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.8 bits (203), Expect = 2e-20
 Identities = 54/134 (40%), Positives = 83/134 (61%), Gaps = 3/134 (2%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G  F  + +TI+   +K +IWDTAGQE F S+   YYR A  AL+VYD+T+ ++F     
Sbjct: 37  GAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARH 96

Query: 159 WLEDARQHSNSNMVIMLIGNKSDL---DARREVKKEEGEVFAREHGLVFMETSAKLATNV 215
           W+++  + ++ +++I L+GNK D+      R+V +EEGE  A E GL+F ETSAK   NV
Sbjct: 97  WVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENV 156

Query: 216 EEAFIDTAKEIYEK 229
            + F+   ++I  K
Sbjct: 157 NDVFLGIGEKIPLK 170

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.8 bits (120), Expect = 1e-08
 Identities = 27/62 (43%), Positives = 38/62 (61%), Gaps = 3/62 (4%)

Query: 1   MVIMLIGNKSDL---DARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
           ++I L+GNK D+      R+V +EEGE  A E GL+F ETSAK   NV + F+   ++I 
Sbjct: 109 IIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKIP 168

Query: 58  EK 59
            K
Sbjct: 169 LK 170

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 81.5 bits (200), Expect = 8e-20
 Identities = 43/130 (33%), Positives = 76/130 (58%), Gaps = 6/130 (4%)

Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
           F  + + +DG  + +QIWDTAGQE FRS+   +YRG+   LL + +   ++F +L+ W +
Sbjct: 43  FLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKK 102

Query: 162 DARQHSNS----NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLV-FMETSAKLATNVE 216
           +   +++     +   +++GNK D+  R+    EE + + R++G   + ETSAK ATNV 
Sbjct: 103 EFIYYADVKEPESFPFVILGNKIDISERQVST-EEAQAWCRDNGDYPYFETSAKDATNVA 161

Query: 217 EAFIDTAKEI 226
            AF +  + +
Sbjct: 162 AAFEEAVRRV 171

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 9e-09
 Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLV-FMETSAKLATNVEEAFIDTAKEI 56
              +++GNK D+  R+    EE + + R++G   + ETSAK ATNV  AF +  + +
Sbjct: 116 FPFVILGNKIDISERQVST-EEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRV 171

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 80.8 bits (198), Expect = 1e-19
 Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 4/122 (3%)

Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
            G  + T+  K +K  +WD  GQ+  R + R YY G  G + V D   R+  +     L 
Sbjct: 44  VGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELH 103

Query: 162 DARQH-SNSNMVIMLIGNKSDLDARR---EVKKEEGEVFAREHGLVFMETSAKLATNVEE 217
                    + +I++  NK DL       E++++ G    R+       + A     + E
Sbjct: 104 RIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYE 163

Query: 218 AF 219
             
Sbjct: 164 GL 165

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 3e-06
 Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 3/52 (5%)

Query: 1   MVIMLIGNKSDLDARR---EVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
            +I++  NK DL       E++++ G    R+       + A     + E  
Sbjct: 114 AIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGL 165

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.9 bits (198), Expect = 1e-19
 Identities = 43/135 (31%), Positives = 74/135 (54%), Gaps = 1/135 (0%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
             +   ++ ++DG   +L I DTAGQE F ++   Y R   G LLV+ I  R++FN +  
Sbjct: 39  IEDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGK 98

Query: 159 WL-EDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEE 217
              +  R     +  ++L+GNK+DL+++R+V + E   F   H + + E SAKL  NV+E
Sbjct: 99  LFTQILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE 158

Query: 218 AFIDTAKEIYEKIQE 232
           AF    + + +  ++
Sbjct: 159 AFEQLVRAVRKYQEQ 173

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 3e-11
 Identities = 21/62 (33%), Positives = 38/62 (61%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
             ++L+GNK+DL+++R+V + E   F   H + + E SAKL  NV+EAF    + + +  
Sbjct: 112 FPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ 171

Query: 61  QE 62
           ++
Sbjct: 172 EQ 173

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 80.8 bits (198), Expect = 2e-19
 Identities = 33/141 (23%), Positives = 53/141 (37%), Gaps = 4/141 (2%)

Query: 93  GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRET 152
           G         G  + T+  K +KL +WD  GQ + R   R YY   A  + V D T ++ 
Sbjct: 40  GEVVTTKPTIGFNVETLSYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDR 99

Query: 153 FNHLTTWLEDARQH-SNSNMVIMLIGNKSDLDAR---REVKKEEGEVFAREHGLVFMETS 208
            +  +  L    Q     +  +++  NK D        EV KE   V  ++     + +S
Sbjct: 100 MSTASKELHLMLQEEELQDAALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASS 159

Query: 209 AKLATNVEEAFIDTAKEIYEK 229
           A     + E        I E+
Sbjct: 160 AIKGEGITEGLDWLIDVIKEE 180

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 3/62 (4%)

Query: 1   MVIMLIGNKSDLDAR---REVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
             +++  NK D        EV KE   V  ++     + +SA     + E        I 
Sbjct: 119 AALLVFANKQDQPGALSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIK 178

Query: 58  EK 59
           E+
Sbjct: 179 EE 180

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 80.1 bits (196), Expect = 3e-19
 Identities = 49/133 (36%), Positives = 76/133 (57%), Gaps = 2/133 (1%)

Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWL 160
           +   +   ID +  +L I DTAGQE F ++   Y R   G LLV+ +T R +F  +  + 
Sbjct: 40  DSYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQ 99

Query: 161 -EDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
            +  R        ++LIGNK+DLD +R+V +EEG+  AR+  + +ME SAK+  NV++AF
Sbjct: 100 RQILRVKDRDEFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAF 159

Query: 220 IDTAKEIYEKIQE 232
            +  + I  K QE
Sbjct: 160 HELVRVIR-KFQE 171

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 3e-11
 Identities = 28/62 (45%), Positives = 43/62 (69%), Gaps = 1/62 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
             ++LIGNK+DLD +R+V +EEG+  AR+  + +ME SAK+  NV++AF +  + I  K 
Sbjct: 111 FPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIR-KF 169

Query: 61  QE 62
           QE
Sbjct: 170 QE 171

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 79.7 bits (195), Expect = 3e-19
 Identities = 52/130 (40%), Positives = 79/130 (60%), Gaps = 5/130 (3%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAF-RSITRSYYRGAAGALLVYDITRRETFNHLT 157
           GV+F  R + IDG++IK+Q+WDTAGQE F +S+ + YYR     + VYD+T   +F+ L 
Sbjct: 36  GVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLP 95

Query: 158 TWLEDARQHSNSNMV-IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT--- 213
            W+E+ +QH  +N +  +L+GNK DL +  +V  +  + FA  H +   ETSAK      
Sbjct: 96  AWIEECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDND 155

Query: 214 NVEEAFIDTA 223
           +VE  F+  A
Sbjct: 156 HVEAIFMTLA 165

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.7 bits (125), Expect = 2e-09
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT---NVEEAFIDTA 53
           +  +L+GNK DL +  +V  +  + FA  H +   ETSAK      +VE  F+  A
Sbjct: 110 IPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 79.6 bits (195), Expect = 3e-19
 Identities = 39/123 (31%), Positives = 65/123 (52%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ 165
            + IDG+   L I DTAGQE + ++   Y R   G L V+ I   ++F  +  + E  ++
Sbjct: 43  QVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKR 102

Query: 166 HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 225
             +S+ V M++       A R V+  + +  AR +G+ ++ETSAK    VE+AF    +E
Sbjct: 103 VKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVRE 162

Query: 226 IYE 228
           I +
Sbjct: 163 IRQ 165

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 1e-09
 Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
           + ++L+GNK DL AR    ++  +  AR +G+ ++ETSAK    VE+AF    +EI +
Sbjct: 109 VPMVLVGNKCDLAARTVESRQAQD-LARSYGIPYIETSAKTRQGVEDAFYTLVREIRQ 165

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 78.5 bits (192), Expect = 9e-19
 Identities = 47/129 (36%), Positives = 70/129 (54%), Gaps = 2/129 (1%)

Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWL 160
           +   + + +D +Q  L+I DTAG E F ++   Y +   G  LVY IT + TFN L    
Sbjct: 38  DSYRKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLR 97

Query: 161 ED-ARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEA 218
           E   R     ++ ++L+GNK DL+  R V KE+G+  AR+     F+E+SAK   NV E 
Sbjct: 98  EQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEI 157

Query: 219 FIDTAKEIY 227
           F D  ++I 
Sbjct: 158 FYDLVRQIN 166

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 1e-08
 Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDTAKEIY 57
           + ++L+GNK DL+  R V KE+G+  AR+     F+E+SAK   NV E F D  ++I 
Sbjct: 109 VPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN 166

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.8 bits (190), Expect = 2e-18
 Identities = 39/126 (30%), Positives = 69/126 (54%), Gaps = 2/126 (1%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED-AR 164
              ID +   L + DTAGQE F ++   Y R   G L+VY +T + +F H+  + +   R
Sbjct: 44  HTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILR 103

Query: 165 QHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDTA 223
                +  ++L+ NK DL   R+V +++G+  A ++ + ++ETSAK    NV++ F D  
Sbjct: 104 VKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLV 163

Query: 224 KEIYEK 229
           + I ++
Sbjct: 164 RVIRQQ 169

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.0 bits (136), Expect = 8e-11
 Identities = 19/60 (31%), Positives = 37/60 (61%), Gaps = 1/60 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDTAKEIYEK 59
             ++L+ NK DL   R+V +++G+  A ++ + ++ETSAK    NV++ F D  + I ++
Sbjct: 110 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQQ 169

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.7 bits (190), Expect = 3e-18
 Identities = 31/141 (21%), Positives = 58/141 (41%), Gaps = 13/141 (9%)

Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWL 160
           +  A  +T+ GKQ  L ++DTAGQE +  +    Y      L+ + +    +F ++    
Sbjct: 44  DHYAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEW 103

Query: 161 EDARQHSNSNMVIMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMET 207
               +    N+  +LIG + DL    +            +  E+G+  A+E G   ++E 
Sbjct: 104 VPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVEC 163

Query: 208 SAKLATNVEEAFIDTAKEIYE 228
           SA     ++  F +    I  
Sbjct: 164 SALTQKGLKTVFDEAIIAILT 184

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 5e-09
 Identities = 15/71 (21%), Positives = 28/71 (39%), Gaps = 13/71 (18%)

Query: 1   MVIMLIGNKSDLDARRE------------VKKEEGEVFAREHGLV-FMETSAKLATNVEE 47
           +  +LIG + DL    +            +  E+G+  A+E G   ++E SA     ++ 
Sbjct: 114 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKT 173

Query: 48  AFIDTAKEIYE 58
            F +    I  
Sbjct: 174 VFDEAIIAILT 184

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 76.6 bits (187), Expect = 4e-18
 Identities = 27/140 (19%), Positives = 49/140 (35%), Gaps = 4/140 (2%)

Query: 91  SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR 150
             G         G  + T++ K I   +WD  GQ+  R + R Y++   G + V D   R
Sbjct: 21  KLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80

Query: 151 ETFNHL-TTWLEDARQHSNSNMVIMLIGNKS---DLDARREVKKEEGEVFAREHGLVFME 206
           E  N      +    +    + V+++  NK    +     E+  + G    R        
Sbjct: 81  ERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQA 140

Query: 207 TSAKLATNVEEAFIDTAKEI 226
           T A     + E     + ++
Sbjct: 141 TCATSGDGLYEGLDWLSNQL 160

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 8e-06
 Identities = 7/56 (12%), Positives = 16/56 (28%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           +V     +  +     E+  + G    R        T A     + E     + ++
Sbjct: 105 LVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL 160

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 73.6 bits (179), Expect = 6e-17
 Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 1/123 (0%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ 165
            I ++ + ++L +WDTAGQE F +IT++YYRGA   +LV+  T RE+F  +++W E    
Sbjct: 43  QIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREK-VV 101

Query: 166 HSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE 225
               ++   L+ NK DL     +K EE E  A+   L F  TS K   NV E F   A++
Sbjct: 102 AEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEK 161

Query: 226 IYE 228
             +
Sbjct: 162 HLQ 164

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.4 bits (111), Expect = 2e-07
 Identities = 20/58 (34%), Positives = 27/58 (46%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE 58
           +   L+ NK DL     +K EE E  A+   L F  TS K   NV E F   A++  +
Sbjct: 107 IPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHLQ 164

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 72.0 bits (175), Expect = 3e-16
 Identities = 52/147 (35%), Positives = 81/147 (55%), Gaps = 6/147 (4%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
           G +F  + + +D + + +QIWDTAGQE F+S+  ++YRGA   +LV+D+T   TF  L +
Sbjct: 36  GADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDS 95

Query: 159 W----LEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATN 214
           W    L  A      N   +++GNK DL+ R+   K        ++ + + ETSAK A N
Sbjct: 96  WRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAIN 155

Query: 215 VEEAFIDTAKEIYEKIQEGVFDITNEV 241
           VE+AF   A+   +  QE   ++ NE 
Sbjct: 156 VEQAFQTIARNALK--QETEVELYNEF 180

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 51.6 bits (122), Expect = 7e-09
 Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
              +++GNK DL+ R+   K        ++ + + ETSAK A NVE+AF   A+   +  
Sbjct: 112 FPFVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALK-- 169

Query: 61  QEGVFDITNE 70
           QE   ++ NE
Sbjct: 170 QETEVELYNE 179

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.6 bits (174), Expect = 5e-16
 Identities = 38/150 (25%), Positives = 59/150 (39%), Gaps = 13/150 (8%)

Query: 92  SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE 151
                    E     I +DGKQ++L +WDTAG E +  +    Y      L+ + I   +
Sbjct: 28  PEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPD 87

Query: 152 TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKK------------EEGEVFARE 199
           +  ++        +H   N+ I+L+GNK DL      ++            EEG   A  
Sbjct: 88  SLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR 147

Query: 200 HGLV-FMETSAKLATNVEEAFIDTAKEIYE 228
            G   +ME SAK    V E F    +   +
Sbjct: 148 IGAFGYMECSAKTKDGVREVFEMATRAALQ 177

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 9e-07
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 13/71 (18%)

Query: 1   MVIMLIGNKSDLDARREVKK------------EEGEVFAREHGLV-FMETSAKLATNVEE 47
           + I+L+GNK DL      ++            EEG   A   G   +ME SAK    V E
Sbjct: 107 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVRE 166

Query: 48  AFIDTAKEIYE 58
            F    +   +
Sbjct: 167 VFEMATRAALQ 177

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.3 bits (173), Expect = 5e-16
 Identities = 44/144 (30%), Positives = 78/144 (54%), Gaps = 6/144 (4%)

Query: 94  SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF 153
            ++ G       +     K   +Q+WDTAGQE F+S+  ++YRGA   +LVYD+T   +F
Sbjct: 32  KATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSF 91

Query: 154 NHLTTWLEDARQHSNSN----MVIMLIGNKSDLDARREVKKEEG-EVFAREHGLV-FMET 207
            ++ +W ++   H+N N       +++GNK D +  +++  E+  +  A+  G +    T
Sbjct: 92  ENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLT 151

Query: 208 SAKLATNVEEAFIDTAKEIYEKIQ 231
           SAK A NV+ AF + A+   ++ Q
Sbjct: 152 SAKNAINVDTAFEEIARSALQQNQ 175

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.2 bits (108), Expect = 5e-07
 Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 2/63 (3%)

Query: 1   MVIMLIGNKSDLDARREVKKEEG-EVFAREHGLV-FMETSAKLATNVEEAFIDTAKEIYE 58
              +++GNK D +  +++  E+  +  A+  G +    TSAK A NV+ AF + A+   +
Sbjct: 113 FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQ 172

Query: 59  KIQ 61
           + Q
Sbjct: 173 QNQ 175

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.2 bits (173), Expect = 5e-16
 Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 3/126 (2%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDAR 164
             TID + + ++I DTAGQE        + R   G +LVYDIT R +F   L        
Sbjct: 42  QATIDDEVVSMEILDTAGQE-DTIQREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDE 100

Query: 165 QHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDTA 223
                N+ ++L+GNK+DLD  R+V  EEGE  A E    F E SA     N+ E F +  
Sbjct: 101 IKKPKNVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELC 160

Query: 224 KEIYEK 229
           +E+  +
Sbjct: 161 REVRRR 166

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 1e-09
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDTAKEIYEK 59
           + ++L+GNK+DLD  R+V  EEGE  A E    F E SA     N+ E F +  +E+  +
Sbjct: 107 VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR 166

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 71.2 bits (173), Expect = 6e-16
 Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 14/143 (9%)

Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWL 160
           E       ID ++I+L +WDT+G   + ++    Y  +   L+ +DI+R ET + +    
Sbjct: 37  ENYTASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKW 96

Query: 161 EDARQHSNSNMVIMLIGNKSDLDA------------RREVKKEEGEVFAREHG-LVFMET 207
           +   Q    N  ++L+G KSDL              +  V  ++G   A++ G   ++E 
Sbjct: 97  KGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIEC 156

Query: 208 SAKLATN-VEEAFIDTAKEIYEK 229
           SA  + N V + F         K
Sbjct: 157 SALQSENSVRDIFHVATLACVNK 179

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.9 bits (115), Expect = 7e-08
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 14/73 (19%)

Query: 1   MVIMLIGNKSDLDA------------RREVKKEEGEVFAREHG-LVFMETSAKLATN-VE 46
             ++L+G KSDL              +  V  ++G   A++ G   ++E SA  + N V 
Sbjct: 107 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVR 166

Query: 47  EAFIDTAKEIYEK 59
           + F         K
Sbjct: 167 DIFHVATLACVNK 179

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 69.3 bits (168), Expect = 3e-15
 Identities = 24/138 (17%), Positives = 45/138 (32%), Gaps = 4/138 (2%)

Query: 93  GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRET 152
                     G+ +  I     +  +WD  GQE+ RS   +YY      ++V D T RE 
Sbjct: 38  NEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER 97

Query: 153 FNHLTTWLEDARQHSNSNMV-IMLIGNKSDLDAR---REVKKEEGEVFAREHGLVFMETS 208
            +     L     H +     +++  NK D+       E+ +       ++H        
Sbjct: 98  ISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACC 157

Query: 209 AKLATNVEEAFIDTAKEI 226
           A     + +        +
Sbjct: 158 ALTGEGLCQGLEWMMSRL 175

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 47.7 bits (112), Expect = 2e-07
 Identities = 6/59 (10%), Positives = 17/59 (28%), Gaps = 3/59 (5%)

Query: 1   MVIMLIGNKSDLDAR---REVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
             +++  NK D+       E+ +       ++H        A     + +        +
Sbjct: 117 AGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL 175

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.1 bits (165), Expect = 8e-15
 Identities = 44/126 (34%), Positives = 59/126 (46%), Gaps = 2/126 (1%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ 165
           +I+ D     LQI DT G   F ++ R         +LVY IT R++   L    E   +
Sbjct: 42  VISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICE 101

Query: 166 HSN--SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTA 223
                 ++ IML+GNK D    REV+  E E  AR     FMETSAKL  NV+E F +  
Sbjct: 102 IKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELL 161

Query: 224 KEIYEK 229
                +
Sbjct: 162 NLEKRR 167

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 9e-12
 Identities = 26/59 (44%), Positives = 32/59 (54%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           + IML+GNK D    REV+  E E  AR     FMETSAKL  NV+E F +       +
Sbjct: 109 IPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLEKRR 167

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 65.7 bits (159), Expect = 6e-14
 Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 4/128 (3%)

Query: 103 GARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED 162
           G  + ++  +  KL +WD  GQ   R   RSY+      + V D   R+ F      L +
Sbjct: 49  GFNIKSVQSQGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTE 108

Query: 163 ARQHSN-SNMVIMLIGNKSDL---DARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA 218
             +    S + +++  NK DL       E+ +       R+        SA     V++ 
Sbjct: 109 LLEEEKLSCVPVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDG 168

Query: 219 FIDTAKEI 226
                K +
Sbjct: 169 MNWVCKNV 176

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 46.9 bits (110), Expect = 3e-07
 Identities = 10/58 (17%), Positives = 19/58 (32%), Gaps = 3/58 (5%)

Query: 2   VIMLIGNKSDL---DARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
            +++  NK DL       E+ +       R+        SA     V++      K +
Sbjct: 119 PVLIFANKQDLLTAAPASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKNV 176

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.8 bits (151), Expect = 6e-13
 Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 1/122 (0%)

Query: 106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ 165
           +IT++G++  LQ+ DTAGQ+ +    ++Y     G +LVY +T  ++F  +         
Sbjct: 44  LITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLD 103

Query: 166 HSNS-NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAK 224
                 + IML+GNK DL   R +  EEG+  A      F+E+SAK      + F     
Sbjct: 104 MVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIIL 163

Query: 225 EI 226
           E 
Sbjct: 164 EA 165

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.9 bits (120), Expect = 1e-08
 Identities = 20/56 (35%), Positives = 27/56 (48%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI 56
           + IML+GNK DL   R +  EEG+  A      F+E+SAK      + F     E 
Sbjct: 110 IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEA 165

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 62.4 bits (150), Expect = 9e-13
 Identities = 26/135 (19%), Positives = 47/135 (34%), Gaps = 4/135 (2%)

Query: 99  GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT 158
               G  + T++ +  KL IWD  GQ++ RS  R+Y+    G + V D   R+       
Sbjct: 31  SPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQR 90

Query: 159 W-LEDARQHSNSNMVIMLIGNKSDLDARREV---KKEEGEVFAREHGLVFMETSAKLATN 214
                  +   +   +++  NK DL         ++       R H       SA    +
Sbjct: 91  ELQSLLVEERLAGATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGED 150

Query: 215 VEEAFIDTAKEIYEK 229
           +         +I  +
Sbjct: 151 LLPGIDWLLDDISSR 165

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 9/62 (14%), Positives = 18/62 (29%), Gaps = 3/62 (4%)

Query: 1   MVIMLIGNKSDLDARREV---KKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
             +++  NK DL         ++       R H       SA    ++         +I 
Sbjct: 104 ATLLIFANKQDLPGALSCNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDIS 163

Query: 58  EK 59
            +
Sbjct: 164 SR 165

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.8 bits (146), Expect = 3e-12
 Identities = 41/129 (31%), Positives = 66/129 (51%), Gaps = 3/129 (2%)

Query: 101 EFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWL 160
           E    +   +   IK  +WDTAGQE F  +   YY  A  A++++D+T R T+ ++  W 
Sbjct: 39  EVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWH 98

Query: 161 EDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFI 220
            D  +    N+ I+L GNK D+  R+   K    VF R+  L + + SAK   N E+ F+
Sbjct: 99  RDLVRVCE-NIPIVLCGNKVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFL 155

Query: 221 DTAKEIYEK 229
             A+++   
Sbjct: 156 WLARKLIGD 164

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 3e-08
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           + I+L GNK D+  R+   K    VF R+  L + + SAK   N E+ F+  A+++   
Sbjct: 108 IPIVLCGNKVDIKDRKVKAKSI--VFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 164

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.6 bits (143), Expect = 9e-12
 Identities = 20/134 (14%), Positives = 45/134 (33%), Gaps = 5/134 (3%)

Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLE 161
              + + +DG+   + I + AG     +    +         + D    +  + L   L 
Sbjct: 40  QYKKEMLVDGQTHLVLIREEAGA--PDAKFSGWADAVIFVFSLEDENSFQAVSRLHGQLS 97

Query: 162 DARQHSNSNMVIMLIGNKSD--LDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEA 218
             R      + + L+G +      + R V          +     + ET A    NV+  
Sbjct: 98  SLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRV 157

Query: 219 FIDTAKEIYEKIQE 232
           F + A+++    ++
Sbjct: 158 FQEVAQKVVTLRKQ 171

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 6e-09
 Identities = 11/65 (16%), Positives = 25/65 (38%), Gaps = 3/65 (4%)

Query: 1   MVIMLIGNKSD--LDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDTAKEIY 57
           + + L+G +      + R V          +     + ET A    NV+  F + A+++ 
Sbjct: 107 LALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVV 166

Query: 58  EKIQE 62
              ++
Sbjct: 167 TLRKQ 171

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 2e-11
 Identities = 37/140 (26%), Positives = 63/140 (45%), Gaps = 1/140 (0%)

Query: 93  GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRET 152
           G  +        R I +DG++  L ++D   Q+  R +           ++VY +T + +
Sbjct: 27  GPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGS 86

Query: 153 FNHLTTWLEDARQHSNSNMVIML-IGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL 211
           F   +      R+   ++ V ++ +GNKSDL   REV  +EG   A      F+ETSA L
Sbjct: 87  FEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAAL 146

Query: 212 ATNVEEAFIDTAKEIYEKIQ 231
             NV+  F    ++I  +  
Sbjct: 147 HHNVQALFEGVVRQIRLRRD 166

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.6 bits (127), Expect = 1e-09
 Identities = 24/61 (39%), Positives = 33/61 (54%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI 60
           + I+L+GNKSDL   REV  +EG   A      F+ETSA L  NV+  F    ++I  + 
Sbjct: 106 VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR 165

Query: 61  Q 61
            
Sbjct: 166 D 166

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.0 bits (141), Expect = 2e-11
 Identities = 24/77 (31%), Positives = 37/77 (48%)

Query: 153 FNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA 212
                  ++  R     ++ I+L+GNKSDL   REV   EG   A      F+ETSA + 
Sbjct: 94  EKASELRIQLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQ 153

Query: 213 TNVEEAFIDTAKEIYEK 229
            NV+E F    +++  +
Sbjct: 154 HNVKELFEGIVRQVRLR 170

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 2e-09
 Identities = 23/59 (38%), Positives = 33/59 (55%)

Query: 1   MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK 59
           + I+L+GNKSDL   REV   EG   A      F+ETSA +  NV+E F    +++  +
Sbjct: 112 IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR 170

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 7e-11
 Identities = 26/132 (19%), Positives = 50/132 (37%), Gaps = 4/132 (3%)

Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDIT-RRETFNHLTTWL 160
            G  + T+  K +K Q+WD  G  + R   R YY      + V D   R       +  +
Sbjct: 37  IGFNVETVTYKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELV 96

Query: 161 EDARQHSNSNMVIMLIGNKSDLDARR---EVKKEEGEVFAREHGLVFMETSAKLATNVEE 217
               +      ++++  NK D++      E+    G    ++      +TSA   T ++E
Sbjct: 97  AMLEEEELRKAILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDE 156

Query: 218 AFIDTAKEIYEK 229
           A     + +  +
Sbjct: 157 AMEWLVETLKSR 168

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 45.1 bits (105), Expect = 1e-06
 Identities = 11/62 (17%), Positives = 26/62 (41%), Gaps = 3/62 (4%)

Query: 1   MVIMLIGNKSDLDARR---EVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY 57
            ++++  NK D++      E+    G    ++      +TSA   T ++EA     + + 
Sbjct: 107 AILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLK 166

Query: 58  EK 59
            +
Sbjct: 167 SR 168

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.9 bits (133), Expect = 2e-10
 Identities = 19/140 (13%), Positives = 40/140 (28%), Gaps = 11/140 (7%)

Query: 91  SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRR 150
            +   +     +      +    IK   +D  G    R + + Y+    G + + D    
Sbjct: 21  KNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADP 80

Query: 151 ETFNHLTTWL-EDARQHSNSNMVIMLIGNKSDLDARREVKK----------EEGEVFARE 199
           E F+     L          ++  +++GNK D        +             +    +
Sbjct: 81  ERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLNTTGSQRIEGQ 140

Query: 200 HGLVFMETSAKLATNVEEAF 219
             +     S  +     EAF
Sbjct: 141 RPVEVFMCSVVMRNGYLEAF 160

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 8e-10
 Identities = 24/120 (20%), Positives = 48/120 (40%), Gaps = 4/120 (3%)

Query: 104 ARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDA 163
             M  I    + +++WD  GQ  FRS+   Y RG +  + + D   +E        L + 
Sbjct: 37  FNMRKITKGNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNL 96

Query: 164 RQHSN-SNMVIMLIGNKSDLDA---RREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 219
                   + ++++GNK DL      +E+ ++      ++  +     S K   N++   
Sbjct: 97  LDKPQLQGIPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 156

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 45.4 bits (106), Expect = 9e-07
 Identities = 9/52 (17%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 1   MVIMLIGNKSDLDA---RREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF 49
           + ++++GNK DL      +E+ ++      ++  +     S K   N++   
Sbjct: 105 IPVLVLGNKRDLPGALDEKELIEKMNLSAIQDREICCYSISCKEKDNIDITL 156

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.5 bits (117), Expect = 4e-08
 Identities = 19/138 (13%), Positives = 39/138 (28%), Gaps = 13/138 (9%)

Query: 103 GARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLED 162
           G      + K +  ++ D  GQ + R      +      L +   +  +           
Sbjct: 33  GIHEYDFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNR 92

Query: 163 A-----------RQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL 211
                            SN+ I+L  NK+DL   +       + F    G        + 
Sbjct: 93  LTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQ- 151

Query: 212 ATNVEEAFIDTAKEIYEK 229
              + E F    ++  ++
Sbjct: 152 -KFLVECFRGKRRDQQQR 168

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 45.8 bits (107), Expect = 7e-07
 Identities = 21/141 (14%), Positives = 36/141 (25%), Gaps = 16/141 (11%)

Query: 102 FGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWL- 160
                  +    +    +D  G    R + ++Y     G + + D    E        L 
Sbjct: 45  LHPTSEELTIAGMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELD 104

Query: 161 EDARQHSNSNMVIMLIGNKSDLDARREV---------------KKEEGEVFAREHGLVFM 205
                 + +N+ I+++GNK D                      K            L   
Sbjct: 105 SLMTDETIANVPILILGNKIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVF 164

Query: 206 ETSAKLATNVEEAFIDTAKEI 226
             S        E F   A+ I
Sbjct: 165 MCSVLKRQGYGEGFRWMAQYI 185

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 21/167 (12%), Positives = 39/167 (23%), Gaps = 37/167 (22%)

Query: 100 VEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT- 158
              G        K +  +++D  GQ + R      + G    +    ++  +        
Sbjct: 28  AGTGIVETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEE 87

Query: 159 ----------WLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFM--- 205
                     +         ++  I+L  NK DL   +  K      +    G       
Sbjct: 88  MNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEA 147

Query: 206 -----------------------ETSAKLATNVEEAFIDTAKEIYEK 229
                                   T A    NV+  F      I + 
Sbjct: 148 AAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 194

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (103), Expect = 4e-06
 Identities = 19/164 (11%), Positives = 38/164 (23%), Gaps = 37/164 (22%)

Query: 103 GARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDIT-----------RRE 151
           G      D + +  ++ D  GQ + R      +      + +  ++              
Sbjct: 34  GIIEYPFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENR 93

Query: 152 TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHG---------- 201
                  +          N  ++L  NK DL   + +     + F    G          
Sbjct: 94  MEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAARE 153

Query: 202 ----------------LVFMETSAKLATNVEEAFIDTAKEIYEK 229
                           +    T A    N+   F      I + 
Sbjct: 154 FILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 197

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.96
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.96
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.95
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.95
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.95
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.95
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.94
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.94
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.94
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.94
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.92
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.92
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.91
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.91
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.9
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.86
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.86
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.86
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.85
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.83
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.76
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.69
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.68
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.65
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.62
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.6
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.59
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.58
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.54
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.53
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.52
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.47
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.47
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.46
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.45
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.45
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.45
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.43
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.43
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.41
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.41
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.4
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.4
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.4
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.39
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.39
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.39
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.38
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.38
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.37
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.37
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.36
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.36
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.36
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.35
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.35
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.34
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.32
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.3
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.3
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.29
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.28
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.28
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.28
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.27
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.26
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.19
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.13
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.12
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.11
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.11
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.09
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.09
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.06
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.05
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.02
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	98.98
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.97
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.97
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.91
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	98.86
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	98.8
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	98.79
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	98.76
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	98.75
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.75
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.66
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.59
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	98.58
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.53
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.51
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.51
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.48
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	98.4
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.39
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.35
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	98.32
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	98.23
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	98.13
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.11
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.11
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	98.01
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	97.99
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	97.92
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.92
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.84
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	97.8
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	97.74
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.74
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	97.67
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	97.63
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.47
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	97.36
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	97.23
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	96.94
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	96.64
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	96.54
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	96.49
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	96.36
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	96.18
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	95.8
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.29
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	95.2
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.08
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	94.05
d1okkd2	207	GTPase domain of the signal recognition particle r	94.04
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	93.68
d2qy9a2	211	GTPase domain of the signal recognition particle r	93.48
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	92.77
d1j8yf2	211	GTPase domain of the signal sequence recognition p	90.88
d1vmaa2	213	GTPase domain of the signal recognition particle r	90.69
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	89.27
d1ls1a2	207	GTPase domain of the signal sequence recognition p	89.18
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	88.46
d2fh5b1	207	Signal recognition particle receptor beta-subunit	88.23
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	87.81
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	87.76
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	83.94
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	82.89
d1nrjb_	209	Signal recognition particle receptor beta-subunit	82.38
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	80.88

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=7.4e-28  Score=179.21  Aligned_cols=138  Identities=28%  Similarity=0.418  Sum_probs=114.1

Q ss_pred             CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCe
Q psy13390         94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNMV  172 (245)
Q Consensus        94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~p  172 (245)
                      +.||.+.++ ...+.+++..+.+.+|||+|++.+..++..+++++|++++|||++++.|++.+..|+..+..... ..+|
T Consensus        29 ~~~~~~~~~-~~~i~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~~d~~ilv~d~t~~~s~~~~~~~~~~i~~~~~~~~~p  107 (168)
T d2gjsa1          29 EAEAAGHTY-DRSIVVDGEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVP  107 (168)
T ss_dssp             -----CEEE-EEEEEETTEEEEEEEEECC-------CHHHHHTSCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCC
T ss_pred             cCCeeeeee-cceeeccccccceeeeecccccccceecccchhhhhhhceeccccccccccccccccchhhcccccccce
Confidence            345565555 56778899999999999999999999999999999999999999999999999999999877653 6789


Q ss_pred             EEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390        173 IMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE  232 (245)
Q Consensus       173 iivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  232 (245)
                      +++||||+|+...++++..++..++..+++++++|||++|.||+++|.++++.+..++++
T Consensus       108 iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~i~~~~~~  167 (168)
T d2gjsa1         108 IILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRRDS  167 (168)
T ss_dssp             EEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHHHH
T ss_pred             EEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHhhC
Confidence            999999999988888999999999999999999999999999999999999998776643

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.7e-27  Score=177.66  Aligned_cols=139  Identities=44%  Similarity=0.761  Sum_probs=129.4

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.|+++.++....+.+++..+.+.+|||+|++.|..+++.++++++++++|||.+++.+++.+..|+..+.+.....
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  110 (171)
T d2ew1a1          31 PPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK  110 (171)
T ss_dssp             CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred             CCcccccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhccceEEEeeecccchhhhhhhhhhhhhccccccc
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999887776678


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      .|+++||||+|+...+.+..+++..++..+++++++|||++|.||+++|.+++++++..
T Consensus       111 ~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         111 VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE  169 (171)
T ss_dssp             CEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999988788889999999999999999999999999999999999988764

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=6.5e-28  Score=178.83  Aligned_cols=136  Identities=36%  Similarity=0.577  Sum_probs=128.0

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||+|.++........+..+.+.+|||+|++.+..+++.+++++|++++|||++++.|++.+..|++.+..+. ++
T Consensus        28 ~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~-~~  106 (164)
T d1z2aa1          28 TKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEV-GD  106 (164)
T ss_dssp             CCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHH-CS
T ss_pred             CcccccccccccceeeeeecCceeeeeeeccCCccchhhhhhhhhccCceEEEEEeccchhhhhhcccccccccccC-CC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999998776 57


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      +|+++||||+|+...+.+..++++.+++.+++++++|||++|.||+++|++++++++
T Consensus       107 ~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~l  163 (164)
T d1z2aa1         107 IPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL  163 (164)
T ss_dssp             CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             ceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHHHh
Confidence            999999999999888889999999999999999999999999999999999999886

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=1.5e-27  Score=177.77  Aligned_cols=138  Identities=42%  Similarity=0.688  Sum_probs=128.5

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.|++|.++....+...+..+.+.+|||+|++.+..+++.+++++|++|+|||++++.++.....|+..+.......
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G~e~~~~~~~~~~~~ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~  110 (169)
T d3raba_          31 TPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDN  110 (169)
T ss_dssp             CSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTTTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSC
T ss_pred             CcccccccccceeeEEEEeecceEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECccchhhhhhhhhhhhhhcccCCc
Confidence            45688999999999999999999999999999999999999999999999999999999999999999888877766678


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      .|+++|+||+|+...+.++.+++..+++.+++++++|||++|.||+++|+++++.+.+
T Consensus       111 ~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         111 AQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE  168 (169)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHT
T ss_pred             ceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            9999999999998888889999999999999999999999999999999999998865

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-27  Score=177.95  Aligned_cols=138  Identities=36%  Similarity=0.669  Sum_probs=122.4

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||++.++.......++..+.+.+||++|++.+..+++.+++++|++++|||+++++||+.+..|+..+.......
T Consensus        29 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~Sf~~~~~~~~~~~~~~~~~  108 (167)
T d1z08a1          29 NDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITDEDSFQKVKNWVKELRKMLGNE  108 (167)
T ss_dssp             CSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHHGGG
T ss_pred             CcccccccccchheeeeccCCccceeeeeccCCcceecccchhhccCCceeEEEEeCCchhHHHhhhhhhhhcccccccc
Confidence            45789999999999999999999999999999999999999999999999999999999999999999998887666567


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      .|+++||||+|+...+.++.+++..++..+++++++|||++|.||+++|.+|++++++
T Consensus       109 ~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         109 ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             SEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             cceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHHHHhh
Confidence            8999999999998888899999999999999999999999999999999999998864

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.95  E-value=4.5e-27  Score=174.95  Aligned_cols=136  Identities=32%  Similarity=0.556  Sum_probs=121.8

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~  169 (245)
                      ...|.||+|.++ ...+.+++..+.+.+||++|++.+..++..+++++|++++|||++++.+++.+..|+..+.+.. .+
T Consensus        30 ~~~~~~T~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~  108 (168)
T d1u8za_          30 VEDYEPTKADSY-RKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDE  108 (168)
T ss_dssp             CSCCCTTCCEEE-EEEEEETTEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             CcccCCcccccc-ccccccccccccccccccccccchhhhhhhcccccceeEEEeeccchhhhhhHHHHHHHHHHhhCCC
Confidence            456789999887 4567789999999999999999999999999999999999999999999999999999987764 36


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ++|+++||||+|+.+.+.++.++++.++..+++++++|||++|.||+++|+++++.+.
T Consensus       109 ~~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~  166 (168)
T d1u8za_         109 NVPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             TSCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            8999999999999888889999999999999999999999999999999999998874

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=6.6e-27  Score=174.19  Aligned_cols=137  Identities=28%  Similarity=0.455  Sum_probs=124.6

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~  169 (245)
                      ...+.||++..+ ...+.+++..+.+.+||++|++.+..+++.+++++|++++|||++++.||+.+..|+..+.+.. ..
T Consensus        30 ~~~~~~t~~~~~-~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~  108 (169)
T d1x1ra1          30 VPDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRE  108 (169)
T ss_dssp             CTTCCTTCCEEE-EEEEEETTEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS
T ss_pred             CcccCcceeecc-ccccccccccccccccccccccccccchhhhhhhccEEEEecccccchhhhccchhhHHHHhhcccc
Confidence            456788888666 5667889999999999999999999999999999999999999999999999999999987664 36


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCC-CHHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDTAKEIYE  228 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~i~~~i~~  228 (245)
                      ++|+++++||+|+...+.++.+++..++..+++++++|||++|. ||+++|.++++.+.+
T Consensus       109 ~~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         109 SFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             CCCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             CccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence            89999999999998888899999999999999999999999986 999999999998875

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=6.7e-27  Score=173.79  Aligned_cols=136  Identities=28%  Similarity=0.431  Sum_probs=124.8

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~  169 (245)
                      ...+.||++.++ ...+.+++..+.+.+|||+|.+.+..++..+++.+|++++|||++++.||+.+..|+..+.+.. ..
T Consensus        30 ~~~~~~t~~~~~-~~~~~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~  108 (167)
T d1xtqa1          30 VDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTSIKSFEVIKVIHGKLLDMVGKV  108 (167)
T ss_dssp             CSCCCSSCCEEE-EEEEEETTEEEEEEEEECCCCCTTCCCCGGGTSSCCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSS
T ss_pred             CcccCcceeccc-ceEEecCcEEEEeeecccccccccccccchhhhhhhhhhhhcccchhhhhhhhhhhhhhhhhccccc
Confidence            456789999887 5677899999999999999999999999999999999999999999999999999998887654 36


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ++|+++||||+|+...+.++.++++.++..++++|++|||++|.||+++|+.+++.+.
T Consensus       109 ~~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         109 QIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             CCCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             ccceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHHhc
Confidence            7999999999999888889999999999999999999999999999999999998774

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=2.3e-26  Score=170.72  Aligned_cols=136  Identities=62%  Similarity=1.027  Sum_probs=127.2

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.|+.+.++......+++..+.+.+|||+|++.+..++..+++++|++++|||+++..|++.+..|+..+.......
T Consensus        30 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~  109 (166)
T d1z0fa1          30 MADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN  109 (166)
T ss_dssp             CSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred             CCcccccccccceeEEEEECCEEEEEEEeccCCchhHHHHHHHHhcCCcEEEEEeccCchHHHHHHHHHHHHHHhhcccc
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999888777778


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      .|+++++||+|+...+.+..+++..+++.+++++++|||++|.||+++|.++++.+
T Consensus       110 ~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         110 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999999999987788888999999999999999999999999999999999876

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3e-26  Score=171.32  Aligned_cols=144  Identities=60%  Similarity=0.916  Sum_probs=133.4

Q ss_pred             CCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q psy13390         90 GSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS  169 (245)
Q Consensus        90 ~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~  169 (245)
                      ....+.||.+.++....+..++..+.+.+|||+|++++..+++.+++++|++++|||.+++.++..+..|+..+......
T Consensus        30 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~  109 (174)
T d2bmea1          30 FKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRETYNALTNWLTDARMLASQ  109 (174)
T ss_dssp             CCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCcccccccccceeeEEEEecCcceeEEEEECCCchhhhhhHHHHhhhCCEEEEEEecccchhHHHHhhhhcccccccCC
Confidence            35678899999998888999999999999999999999999999999999999999999999999999999998887767


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEG  233 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~  233 (245)
                      +.|+++|+||+|+...+....+....++..+++++++|||++|.||+++|.++++.++++.+.+
T Consensus       110 ~~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~~i~~~~~~~  173 (174)
T d2bmea1         110 NIVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIESG  173 (174)
T ss_dssp             TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHSC
T ss_pred             ceEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHHHHHHHhcC
Confidence            8999999999999887888888999999999999999999999999999999999999887654

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-26  Score=171.25  Aligned_cols=136  Identities=42%  Similarity=0.725  Sum_probs=127.3

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.|+++.++.......++..+.+.+||++|++.+...+..+++.+|++++|||++++.|++.+..|+..+......+
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~i~~~~~~~~~~~~~~  105 (164)
T d1yzqa1          26 DNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSAAAVVVYDITNVNSFQQTTKWIDDVRTERGSD  105 (164)
T ss_dssp             CSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS
T ss_pred             CCccccceeeeccceeeccCCCceeeeecccCCcchhccchHHHhhccceEEEeeccccccchhhhHhhHHHHHHhcCCC
Confidence            45778999999988899999999999999999999999999999999999999999999999999999999888777678


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      +|+++||||+|+.+.+.+..+++..++..+++++++|||++|.||+++|++|++.+
T Consensus       106 ~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         106 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             SEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred             ceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHhh
Confidence            99999999999988788888999999999999999999999999999999999876

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.6e-26  Score=172.67  Aligned_cols=139  Identities=31%  Similarity=0.530  Sum_probs=124.7

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~  169 (245)
                      ...+.||. .+.....+.+++..+.+.+|||+|++++...+..+++++|++++|||++++.||+.+..|+..+.+.. ..
T Consensus        32 ~~~~~~t~-~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~  110 (173)
T d2fn4a1          32 VSDYDPTI-EDSYTKICSVDGIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRD  110 (173)
T ss_dssp             CSSCCTTC-CEEEEEEEEETTEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSS
T ss_pred             Cccccccc-ccceeeEeccCCeeeeeeccccccccccccccchhhccceeeeeecccccccccchhhhhhHHHHHHhccC
Confidence            34566775 45556788899999999999999999999999999999999999999999999999999999887654 36


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      ++|++|||||+|+...+.+..+++..++..+++++++|||++|.||+++|+++++.+.+.+
T Consensus       111 ~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~k~~  171 (173)
T d2fn4a1         111 DFPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ  171 (173)
T ss_dssp             CCCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             CCceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHh
Confidence            7999999999999887888899999999999999999999999999999999999986654

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=4.6e-26  Score=169.21  Aligned_cols=136  Identities=39%  Similarity=0.686  Sum_probs=128.3

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||.+.++.......+.....+.+|||+|++.+..++..+++.+|++++|||++++.+|+.+..|+..+......+
T Consensus        30 ~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  109 (167)
T d1z0ja1          30 DPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPS  109 (167)
T ss_dssp             CTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT
T ss_pred             CcccccccccccccccccccccccceeeeecCCchhhhHHHHHHHhhccceEEEeeechhhhhhhHHHhhhhhhhccCCc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999998888777788


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      .|+++|+||+|+...+.+..++++.++..+++++++|||++|.||+++|.++++.|
T Consensus       110 ~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         110 IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             SEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence            99999999999988888999999999999999999999999999999999999876

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.6e-26  Score=169.70  Aligned_cols=143  Identities=83%  Similarity=1.224  Sum_probs=128.5

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.|+.+.+.........+..+.+.+||++|++.+..+++.+++.+|++++|||++++.+|+.+..|+..+.+....+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~  108 (173)
T d2a5ja1          29 QPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN  108 (173)
T ss_dssp             CC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred             CCCcccceeeccceeeeeeeeeEEEEEeecccCccchhhHHHHHhhccCEEEEEEeecChHHHHhHHHHHHHHHHhCCCC
Confidence            45667888888888888999999999999999999999999999999999999999999999999999999988877678


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcC
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEG  233 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~  233 (245)
                      +|++||+||+|+...+.+..+++..++..+++++++|||++|.||+++|.++++.+.++.+++
T Consensus       109 ~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~~i~~~~~~~  171 (173)
T d2a5ja1         109 MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQG  171 (173)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHTT
T ss_pred             CeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHcc
Confidence            999999999999887888899999999999999999999999999999999999998877654

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.9e-26  Score=169.20  Aligned_cols=146  Identities=52%  Similarity=0.809  Sum_probs=130.9

Q ss_pred             CCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q psy13390         90 GSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS  169 (245)
Q Consensus        90 ~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~  169 (245)
                      ....+.++.+.+.....+.+++..+.+.+|||+|+++|...+..+++.+|++++|||.+++.||..+..|+..+.++..+
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~e~~~~~~~~~~~~~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~  108 (175)
T d2f9la1          29 FNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAKHLTYENVERWLKELRDHADS  108 (175)
T ss_dssp             CCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCT
T ss_pred             CCCcccccccceeeeEEEEECCEEEEEEecccCCcHHHHHHHHHHhhccCeEEEEEECCCcccchhHHHHHHHHHHhcCC
Confidence            35667888999998999999999999999999999999999999999999999999999999999999999999888878


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCCC
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVF  235 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~~  235 (245)
                      ++|+++||||+|+.+.+....+....+...++.++++|||++|.|++++|+++++.+.+...+.+.
T Consensus       109 ~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~~~~~~qi  174 (175)
T d2f9la1         109 NIVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVSQKQI  174 (175)
T ss_dssp             TCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHTSCC
T ss_pred             CCcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHHHHHHHhhhccC
Confidence            899999999999987777777888888888999999999999999999999999999877766543

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4.3e-26  Score=173.45  Aligned_cols=142  Identities=44%  Similarity=0.750  Sum_probs=131.3

Q ss_pred             CCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q psy13390         90 GSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS  169 (245)
Q Consensus        90 ~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~  169 (245)
                      ....+.||+|.++....+.+++..+.+.+|||+|++++..+|..++++||++|+|||++++.++..+..|+..+.+....
T Consensus        31 ~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~  110 (194)
T d2bcgy1          31 YTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATS  110 (194)
T ss_dssp             CCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCcchhhhhhHhhhhhhhhhcccC
Confidence            35678899999999999999999999999999999999999999999999999999999999999999998888777668


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ  231 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  231 (245)
                      .+|+++|+||+|+...+.+..++...++...+++++++||++|.||+++|+++++.+.+...
T Consensus       111 ~~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~~i~~~~~  172 (194)
T d2bcgy1         111 TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESMS  172 (194)
T ss_dssp             TCEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHCC
T ss_pred             CceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHHHHHHHhh
Confidence            89999999999998888899999999999999999999999999999999999998876443

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.9e-26  Score=169.10  Aligned_cols=138  Identities=40%  Similarity=0.686  Sum_probs=128.8

Q ss_pred             CCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q psy13390         90 GSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS  169 (245)
Q Consensus        90 ~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~  169 (245)
                      ....+.||.+.++........+..+.+.+|||+|++.+..+++.++++++++++|||.+++.+++.+..|...+.+...+
T Consensus        31 f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~  110 (170)
T d1r2qa_          31 FHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITNEESFARAKNWVKELQRQASP  110 (170)
T ss_dssp             CCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCT
T ss_pred             CCcccccccccccccceeeccceEEEEEeccCCCchhhhhhHHHHhhCcceEEEEeccchhhHHHHHHHHhhhhhhccCC
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999888777667


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ++|+++|+||+|+..++.++.+++..++..+++++++|||++|.||+++|.+|++.+.
T Consensus       111 ~~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~~i~  168 (170)
T d1r2qa_         111 NIVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKLP  168 (170)
T ss_dssp             TCEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTSC
T ss_pred             CceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            8999999999999888889999999999999999999999999999999999988653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1.6e-26  Score=172.77  Aligned_cols=141  Identities=48%  Similarity=0.837  Sum_probs=115.9

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||+|.++....+.+++..+.+.+|||+|++.+..+++.+++++|++|+|||++++.|++.+..|+..+......+
T Consensus        32 ~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  111 (173)
T d2fu5c1          32 NSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASAD  111 (173)
T ss_dssp             --CHHHHHCEEEEEEEEEETTEEEEEEEEEC---------CCTTTTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT
T ss_pred             CCccCccccceEEEEEEEECCEEEEEEEEECCCchhhHHHHHHhccCCCEEEEEEECCChhhHHHHHHHHHHhhhhccCC
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999887777688


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ  231 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  231 (245)
                      .|+++|+||.|+...+....+++..++...++++++|||++|.||+++|.++++.+.++..
T Consensus       112 ~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i~~k~~  172 (173)
T d2fu5c1         112 VEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKMD  172 (173)
T ss_dssp             CEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhcC
Confidence            9999999999998777788888999999999999999999999999999999999977654

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.1e-26  Score=170.57  Aligned_cols=136  Identities=29%  Similarity=0.400  Sum_probs=116.6

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||+|. .......+++..+.+.+||++|++.|..+++.+++++|++++|||++++.||+.+..|+........++
T Consensus        28 ~~~~~~t~~~-~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~  106 (177)
T d1kmqa_          28 PEVYVPTVFE-NYVADIEVDGKQVELALWDTAGLEDYDRLRPLSYPDTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPN  106 (177)
T ss_dssp             CSSCCCCSEE-EEEEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTT
T ss_pred             CCCcCCceee-eccccccccccceeeeccccCccchhcccchhhcccchhhhhhcccchhHHHHHHHHHHHHHHHHhCCC
Confidence            3457788884 446777889999999999999999999999999999999999999999999998887554444444478


Q ss_pred             CeEEEEEeCCCCccC------------cccCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       171 ~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      +|++|||||+|+...            +.++.+++..++..++ .+|++|||++|.||+++|+.+++.++
T Consensus       107 ~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~~E~SAkt~~gi~e~F~~i~~~~l  176 (177)
T d1kmqa_         107 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVFEMATRAAL  176 (177)
T ss_dssp             SCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence            999999999998532            4577888999999888 57999999999999999999999876

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.4e-26  Score=168.61  Aligned_cols=138  Identities=32%  Similarity=0.427  Sum_probs=120.0

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~  169 (245)
                      ...|.||+|.++. .....++..+.+.+|||+|++.+. .+..+++++|++++|||++++.|++.+..|+....... ..
T Consensus        28 ~~~~~pTi~~~~~-~~~~~~~~~~~l~i~D~~g~~~~~-~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~  105 (168)
T d2atva1          28 IWEYDPTLESTYR-HQATIDDEVVSMEILDTAGQEDTI-QREGHMRWGEGFVLVYDITDRGSFEEVLPLKNILDEIKKPK  105 (168)
T ss_dssp             CSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCCCCH-HHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTS
T ss_pred             CCccCCceecccc-ccccccccceEEEEeecccccccc-cchhhhcccccceeecccCCccchhhhhhhccccccccccc
Confidence            4568899998884 445678999999999999998874 55679999999999999999999999998876654433 36


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCC-CHHHHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~~~~i~~~i~~~~  230 (245)
                      +.|+++||||+|+...+.++.+++..+++.++++|++|||++|. ||+++|.++++.+.+++
T Consensus       106 ~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l~~~i~~~r  167 (168)
T d2atva1         106 NVTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRRR  167 (168)
T ss_dssp             CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHHH
T ss_pred             CcceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHHHHHHHHhc
Confidence            79999999999998878899999999999999999999999998 59999999999987764

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=7.2e-26  Score=168.63  Aligned_cols=136  Identities=45%  Similarity=0.780  Sum_probs=118.7

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM  171 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  171 (245)
                      ..+.+++|.++....+.+++..+.+++|||+|++++..++..+++++|++++|||++++.++..+..|+..+........
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~e~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~  113 (170)
T d2g6ba1          34 GTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDV  113 (170)
T ss_dssp             CCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC--------CCGGGCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTC
T ss_pred             ccccceeeeeeEEEEEEecCcEEEEEEEECCCchhhHHHHHHhhcCCceeEEEecCCcccchhhhhhhhhhhhhccCCCc
Confidence            44577889999999999999999999999999999999999999999999999999999999999999888877766788


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      |+++|+||+|+.....++.+++..++..+++++++|||++|.||+++|+++++.+.
T Consensus       114 ~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         114 ALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             EEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             eEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            99999999999888889999999999999999999999999999999999998874

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-25  Score=168.01  Aligned_cols=138  Identities=33%  Similarity=0.518  Sum_probs=120.5

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~  169 (245)
                      ...+.||.|. .....+.+++..+.+.+||++|.+.+...++.+++.+|++++|||++++.||+.+..|+..+.... ..
T Consensus        31 ~~~~~~t~~~-~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~  109 (171)
T d2erya1          31 VTDYDPTIED-SYTKQCVIDDRAARLDILDTAGQEEFGAMREQYMRTGEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRD  109 (171)
T ss_dssp             CSSCCTTCCE-EEEEEEEETTEEEEEEEEECC----CCHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSS
T ss_pred             CcccCccccc-ceeeeeeecccccccccccccccccccccccccccccceEEEeeccccccchhhHHHHhHHHHhhcccC
Confidence            4567888874 457778899999999999999999999999999999999999999999999999999998876654 36


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      ..|+++|+||+|+...+.+..+++..+++.+++++++|||++|.||+++|.++++.+.+.
T Consensus       110 ~~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~k~  169 (171)
T d2erya1         110 EFPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF  169 (171)
T ss_dssp             CCSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            789999999999988888999999999999999999999999999999999999998654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=8.1e-26  Score=170.66  Aligned_cols=135  Identities=24%  Similarity=0.388  Sum_probs=116.5

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHH-HHHHHHhhcCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT-WLEDARQHSNS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~-~~~~~~~~~~~  169 (245)
                      ...+.||++.. ....+.+.+..+.+.+|||+|++.+..++..+++++|++++|||++++.||+.+.. |...+... ..
T Consensus        35 ~~~~~~Ti~~~-~~~~~~~~~~~~~l~i~D~~g~e~~~~~~~~~~~~a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~-~~  112 (185)
T d2atxa1          35 PEEYVPTVFDH-YAVSVTVGGKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVNPASFQNVKEEWVPELKEY-AP  112 (185)
T ss_dssp             CCSCCCSSCCC-EEEEEESSSCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHH-ST
T ss_pred             CCcCCCceeee-eeEEEeeCCceEEeecccccccchhhhhhhhcccccceeeeccccchHHHHHHHHHHHHHHHHhc-CC
Confidence            45678999754 46677788999999999999999999999999999999999999999999998765 45544444 46


Q ss_pred             CCeEEEEEeCCCCcc------------CcccCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDA------------RREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       170 ~~piivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ++|+++|+||+|+..            .+.++.+++..+++.++ ++|++|||++|.||+++|+.+++.++
T Consensus       113 ~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~~E~SAk~~~gv~e~F~~li~~il  183 (185)
T d2atxa1         113 NVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCYVECSALTQKGLKTVFDEAIIAIL  183 (185)
T ss_dssp             TCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHc
Confidence            899999999999863            35688899999998887 68999999999999999999998874

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.1e-26  Score=170.78  Aligned_cols=135  Identities=33%  Similarity=0.422  Sum_probs=121.0

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN--  168 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--  168 (245)
                      ...+.||+|..+ .....+++..+.+.+||++|++.+...+..+++.+|++++|||++++.+++.+..|+..+.+...  
T Consensus        28 ~~~~~~T~~~~~-~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~  106 (171)
T d2erxa1          28 RESYIPTVEDTY-RQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDV  106 (171)
T ss_dssp             CSSCCCCSCEEE-EEEEEETTEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCHHHHHTTHHHHHHHHHHHC--
T ss_pred             CCccCcceeecc-ccceeeccccceeccccccccccccccccccccceeEEEEEeecccccchhcccchhhhhhhhhccC
Confidence            456789998766 55667899999999999999999999999999999999999999999999999999888766432  


Q ss_pred             CCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        169 SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       169 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      .++|++|||||+|+...+.++.++++.++..+++++++|||++|.||+++|+.+++.+
T Consensus       107 ~~~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         107 ESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  164 (171)
T ss_dssp             -CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             CCCcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            6799999999999988888999999999999999999999999999999999998754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.5e-27  Score=174.79  Aligned_cols=135  Identities=31%  Similarity=0.528  Sum_probs=121.0

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||+|.++....+..++..+.+.+|||+|++.+..+++.+++++|++++|||++++.||+.+..|+..+.+.. ++
T Consensus        29 ~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~-~~  107 (170)
T d1i2ma_          29 EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVC-EN  107 (170)
T ss_dssp             -CCEEEETTEEEEEEEECBTTCCEEEEEEECTTHHHHSSCGGGGTTTCCEEEEEEETTSGGGGTTHHHHHHHHHHHH-CS
T ss_pred             CcccccceeccccccccccccccccccccccccccccceecchhcccccchhhccccccccccchhHHHHHHHhhcc-CC
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999988776 67


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +|+++||||+|+...+..  ++...++...++++++|||++|.||+++|.+|++.++.
T Consensus       108 ~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~  163 (170)
T d1i2ma_         108 IPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  163 (170)
T ss_dssp             CCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHHT
T ss_pred             Cceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHcc
Confidence            999999999999765432  34556788889999999999999999999999998864

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.3e-25  Score=165.85  Aligned_cols=136  Identities=39%  Similarity=0.722  Sum_probs=125.3

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||+|.++....+.+++..+.+.+|||+|++.+..+++.+++++|++++|||.+++.|++.+..|+..+.......
T Consensus        29 ~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~  108 (170)
T d1ek0a_          29 AENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERFASLAPMYYRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKD  108 (170)
T ss_dssp             CTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTT
T ss_pred             CccccccccceeeccccccccccccccccccCCchhHHHHHHHHHhccceEEEEEeCCcccchhhhhhhhhhhccccccc
Confidence            45688999999999999999999999999999999999999999999999999999999999999999998877776678


Q ss_pred             CeEEEEEeCCCCcc---CcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDA---RREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       171 ~piivv~nK~Dl~~---~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      .|+++++||+|+..   .+.+..+++..+++.++++|++|||++|.||+++|.+++++|
T Consensus       109 ~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         109 IIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             CEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             cceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHh
Confidence            99999999999853   367888999999999999999999999999999999998765

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.8e-25  Score=166.85  Aligned_cols=136  Identities=27%  Similarity=0.393  Sum_probs=118.3

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCC---ChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-C
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTA---GQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-N  168 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~---G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~  168 (245)
                      .+.+|+|.++....+.++++.+.+.+||++   |++++  ++..+++++|++|+|||++++.|++.+..|+..+.... .
T Consensus        32 ~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~~~g~e~~--~~~~~~~~~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~  109 (172)
T d2g3ya1          32 SDCEVLGEDTYERTLMVDGESATIILLDMWENKGENEW--LHDHCMQVGDAYLIVYSITDRASFEKASELRIQLRRARQT  109 (172)
T ss_dssp             CC---CCTTEEEEEEEETTEEEEEEEECCTTTTHHHHH--HHHCCCCCCSEEEEEEETTCHHHHHHHHHHHHHHHTSGGG
T ss_pred             ccccceeeecceeeeccCCceeeeeeeccccccccccc--cccccccccceeeeeecccccchhhhhhhhhhhhhhcccc
Confidence            345788888888999999999999999864   56655  66779999999999999999999999999998887653 3


Q ss_pred             CCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        169 SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       169 ~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      +++|+++|+||+|+...+.++.++++.++..+++++++|||++|.||+++|.++++.+..++
T Consensus       110 ~~~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         110 EDIPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             TTSCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             CCceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHHHHHHHHHcc
Confidence            68999999999999888889999999999999999999999999999999999999987654

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.5e-25  Score=166.41  Aligned_cols=136  Identities=32%  Similarity=0.499  Sum_probs=122.6

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-S  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~  169 (245)
                      ...+.||+|. +......+++..+.+.+||++|++.+...+..+++++|++++|||++++.+|..+..|+..+..... +
T Consensus        29 ~~~~~~t~~~-~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~~~~a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~  107 (167)
T d1kaoa_          29 IEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYE  107 (167)
T ss_dssp             CSCCCTTCCE-EEEEEEEETTEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTS
T ss_pred             CCccCCceee-eeeeeeecCcceEeeccccCCCccccccchHHHhhcccceeeeeeecchhhhhhhhchhhhhhhhccCC
Confidence            4457788874 4567788899999999999999999999999999999999999999999999999999988876543 6


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ++|++|||||+|+...+.+..+++..++..+++++++|||++|.||+++|.++++++.
T Consensus       108 ~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         108 KVPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHHHHHc
Confidence            7999999999999887888899999999999999999999999999999999998764

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=6.4e-26  Score=171.34  Aligned_cols=141  Identities=33%  Similarity=0.611  Sum_probs=124.2

Q ss_pred             CCCCCCCCcceeeEEEEEEC----------CeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHH
Q psy13390         91 SSGSSSGGGVEFGARMITID----------GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWL  160 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~----------~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~  160 (245)
                      ...+.+|.+.++....+.++          +..+.+.+|||+|++.|+.+++.+++++|++|+|||++++.+++.+..|+
T Consensus        31 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G~e~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~  110 (186)
T d2f7sa1          31 NPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWM  110 (186)
T ss_dssp             CCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEEEETTCHHHHHHHHHHH
T ss_pred             CCccCCcccceeeEEEEEEecccccccccccceEEeccccCCcchhhHHHHHHHHhcCCEEEEEEeccccccceeeeecc
Confidence            44567788888776666553          34578999999999999999999999999999999999999999999999


Q ss_pred             HHHHhhcC-CCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHh
Q psy13390        161 EDARQHSN-SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ  231 (245)
Q Consensus       161 ~~~~~~~~-~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~  231 (245)
                      ..+..+.. ...|+++|+||+|+...++++.+++..++..+++++++|||++|.||+++|+++++.+.++.+
T Consensus       111 ~~~~~~~~~~~~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~~k~~  182 (186)
T d2f7sa1         111 SQLQANAYCENPDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME  182 (186)
T ss_dssp             HTCCCCCTTTCCEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhccCCCceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            87766543 678999999999998888899999999999999999999999999999999999999987654

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.3e-25  Score=165.39  Aligned_cols=136  Identities=34%  Similarity=0.515  Sum_probs=121.7

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~  169 (245)
                      ...+.||+|..+ ...+.+++..+.+.+||++|++.+..+++.+++++|++++|||++++.||+.+..|+..+.+.. .+
T Consensus        29 ~~~~~~t~~~~~-~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~  107 (167)
T d1c1ya_          29 VEKYDPTIEDSY-RKQVEVDCQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTE  107 (167)
T ss_dssp             CCSCCCCSEEEE-EEEEESSSCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCS
T ss_pred             CCccCCcccccc-ceeEEeeeeEEEeccccccCcccccccccccccccceeEEeeeccchhhhHhHHHHHHHHHHhcCCC
Confidence            456889998776 5566788999999999999999999999999999999999999999999999999999887654 36


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHH-cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ++|+++||||+|+...+.+..+++..++.. .++++++|||++|.||+++|.++++.+.
T Consensus       108 ~~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         108 DVPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             CCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             CCeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence            899999999999988888888888888877 4789999999999999999999998873

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-24  Score=164.61  Aligned_cols=138  Identities=20%  Similarity=0.315  Sum_probs=117.4

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||+|..+ .....+.+..+.+.+|||+|+++|+.+++.+++++|++++|||++++.||+.+..|+.........+
T Consensus        29 ~~~~~~t~~~~~-~~~~~~~~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~  107 (191)
T d2ngra_          29 PSEYVPTVFDNY-AVTVMIGGEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPK  107 (191)
T ss_dssp             CSSCCCCSEEEE-EEEEEETTEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT
T ss_pred             CCCcCCceeeec-ceeEeeCCceeeeeccccccchhhhhhhhhcccccceeecccccchHHHHHHHHHHHHHHHhhcCCC
Confidence            456789998554 6667788999999999999999999999999999999999999999999999987544444444478


Q ss_pred             CeEEEEEeCCCCcc------------CcccCHHHHHHHHHHc-CCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDA------------RREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       171 ~piivv~nK~Dl~~------------~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      .|+++|+||+|+..            .+.++.+++..++..+ +.++++|||++|.||+++|+.+++.+++.
T Consensus       108 ~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~~  179 (191)
T d2ngra_         108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALEP  179 (191)
T ss_dssp             CCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHHTSC
T ss_pred             CceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHhcC
Confidence            99999999999853            2458889999999886 47899999999999999999999887553

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.1e-24  Score=161.51  Aligned_cols=138  Identities=46%  Similarity=0.820  Sum_probs=120.2

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||+|.++....+.+++..+.+.+|||||++.++.+++.+++++|++++|||++++.|++.+..|+..+.......
T Consensus        28 ~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~  107 (166)
T d1g16a_          28 NPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITDERTFTNIKQWFKTVNEHANDE  107 (166)
T ss_dssp             CC-------CCEEEEEEESSSCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT
T ss_pred             CCccCCccceeEEEEEEEECCEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccCHHHHHhhhhhhhccccCc
Confidence            45688999999999999999999999999999999999999999999999999999999999999999888887777778


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      .|++++++|.|+.. +....+++..++..+++++++|||++|.||+++|.++++.+.++
T Consensus       108 ~~~i~~~~k~d~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         108 AQLLLVGNKSDMET-RVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             CEEEEEEECTTCTT-CCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             ceeeeecchhhhhh-hhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHHHHhc
Confidence            89999999999854 55678889999999999999999999999999999999988654

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.7e-24  Score=158.62  Aligned_cols=135  Identities=30%  Similarity=0.520  Sum_probs=121.0

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-C
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-S  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~  169 (245)
                      ...+.||+|.++... +...+..+.+.+||++|++.+...++.+++.++++++|||++++.+|+.+..|+..+.+... .
T Consensus        29 ~~~~~~~~~~~~~~~-~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~iiv~d~~~~~s~~~~~~~~~~i~~~~~~~  107 (166)
T d1ctqa_          29 VDEYDPTIEDSYRKQ-VVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSD  107 (166)
T ss_dssp             CCSCCCCSEEEEEEE-EEETTEEEEEEEEEECCCGGGHHHHHHHHHHCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCS
T ss_pred             CCccCCccceeeccc-eeeeceeeeeeeeeccCccccccchhhhhhcccccceeecccccccHHHHHHHHHHHHHhcCCC
Confidence            456789999887544 56788899999999999999999999999999999999999999999999999999877653 5


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ++|+++|+||+|+. .+.++.+++..++..+++++++|||++|.||+++|.++++.+.
T Consensus       108 ~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~~~i~  164 (166)
T d1ctqa_         108 DVPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             SCCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CCeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            79999999999985 4567788999999999999999999999999999999999874

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.3e-24  Score=159.45  Aligned_cols=140  Identities=45%  Similarity=0.785  Sum_probs=127.2

Q ss_pred             CCCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC
Q psy13390         89 SGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN  168 (245)
Q Consensus        89 ~~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~  168 (245)
                      .....+.++.+.++....+.+++..+.+.+|||+|+++++.+++.+++++|++++|||++++.+++.+..|+..+.+...
T Consensus        31 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~  110 (177)
T d1x3sa1          31 TFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCT  110 (177)
T ss_dssp             CCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHTTCCS
T ss_pred             CCCCccccceeecceeEEEEEeccccEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCccccccchhhhhhhccccc
Confidence            34567888899999888999999999999999999999999999999999999999999999999999999999877553


Q ss_pred             -CCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        169 -SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       169 -~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                       ...|+++++||.|.. .+.+..+++..++..+++++++|||++|.||+++|+++++.+++.
T Consensus       111 ~~~~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~~~l~~~  171 (177)
T d1x3sa1         111 RNDIVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT  171 (177)
T ss_dssp             CSCCEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             ccceeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHHHccC
Confidence             578999999999975 467888999999999999999999999999999999999998754

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=1.4e-24  Score=162.87  Aligned_cols=137  Identities=24%  Similarity=0.395  Sum_probs=116.3

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSN  170 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~  170 (245)
                      ...+.||++..+ ...+.+++..+.+.+||++|++.+...++.+++++|++++|||++++.||+.+..|+.........+
T Consensus        28 ~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~  106 (179)
T d1m7ba_          28 PENYVPTVFENY-TASFEIDTQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISRPETLDSVLKKWKGEIQEFCPN  106 (179)
T ss_dssp             CSSCCCCSEEEE-EEEEECSSCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTT
T ss_pred             CCccCCceeecc-cccccccceEEeeccccccccccccccccchhhhhhhhheeeecccCCCHHHHHHHHHHHHhccCCc
Confidence            345778887554 5667788999999999999999999999999999999999999999999999887555444433468


Q ss_pred             CeEEEEEeCCCCcc------------CcccCHHHHHHHHHHcCC-cEEEeccCCCCC-HHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDA------------RREVKKEEGEVFAREHGL-VFMETSAKLATN-VEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~-i~~~~~~i~~~i~~  228 (245)
                      .|+++||||+|+..            .+.++.+++..+++.++. +|++|||++|.+ |+++|+.+++.+++
T Consensus       107 ~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n~i~~~F~~~~~~~l~  178 (179)
T d1m7ba_         107 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSENSVRDIFHVATLACVN  178 (179)
T ss_dssp             CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred             ceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCcCHHHHHHHHHHHHhc
Confidence            99999999999853            356888999999988874 799999999985 99999999998875

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.5e-24  Score=161.29  Aligned_cols=135  Identities=24%  Similarity=0.459  Sum_probs=115.0

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHH-HHHHHHhhcCC
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTT-WLEDARQHSNS  169 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~-~~~~~~~~~~~  169 (245)
                      ...+.||++.. ....+.+++..+.+.+||++|++.+..++..+++++|++++|||++++.||+.+.. |...+..+. .
T Consensus        31 ~~~~~~ti~~~-~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~-~  108 (183)
T d1mh1a_          31 PGEYIPTVFDN-YSANVMVDGKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC-P  108 (183)
T ss_dssp             CSSCCCCSCCE-EEEEEEETTEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHS-T
T ss_pred             Ccccccceeec-eeeeeeccCcceEEEeecccccccchhhhhhcccccceeeeeeccchHHHHHHHHHHHHHHHHHhC-C
Confidence            45678999855 45667789999999999999999999999999999999999999999999999976 555555444 6


Q ss_pred             CCeEEEEEeCCCCccC------------cccCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDAR------------REVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ++|++||+||+|+...            +.....++..+++.++ ++|++|||++|.||+++|+++++.++
T Consensus       109 ~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         109 NTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             TSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             CCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHc
Confidence            8999999999998533            2355677888888877 78999999999999999999999874

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=5.4e-24  Score=158.99  Aligned_cols=140  Identities=33%  Similarity=0.590  Sum_probs=107.8

Q ss_pred             CCCCCCCCcceeeEEEEEEC-CeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-
Q psy13390         91 SSGSSSGGGVEFGARMITID-GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-  168 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~-~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-  168 (245)
                      ...+.||.|.++........ .....+.+|||+|++++...+..+++.++++++|||++++.||+.+..|+..+..+.. 
T Consensus        28 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~  107 (175)
T d1ky3a_          28 SQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANV  107 (175)
T ss_dssp             CTTC---CCCSCEEEEECCSSSCCEEEEEECCC----------CCSTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHHCC
T ss_pred             CCccCcccccceeeeeeeecCcccccceeeccCCchhhhhHHHHHhhccceEEEEeecccccccchhhhcchhhhhhhhh
Confidence            34677888888777666544 4567799999999999999999999999999999999999999999999998865432 


Q ss_pred             ---CCCeEEEEEeCCCCccC-cccCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        169 ---SNMVIMLIGNKSDLDAR-REVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       169 ---~~~piivv~nK~Dl~~~-~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                         .++|+++|+||+|+... +.++.+++..++..++ +++++|||++|.||+++|+++++.++++.
T Consensus       108 ~~~~~~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         108 NSPETFPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  174 (175)
T ss_dssp             SCTTTCCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             cccccCcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhcc
Confidence               47899999999999754 3477888999998886 78999999999999999999999998764

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=1.2e-23  Score=155.55  Aligned_cols=134  Identities=38%  Similarity=0.687  Sum_probs=119.7

Q ss_pred             CCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhh-hhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC
Q psy13390         90 GSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRS-ITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN  168 (245)
Q Consensus        90 ~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~-~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~  168 (245)
                      ....+.+|++.++......+......+.+||++|...+.. .++.+++++|++++|||++++.||+.+..|+..+.++..
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~  106 (165)
T d1z06a1          27 FPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLL  106 (165)
T ss_dssp             CCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHCC
T ss_pred             CCCccCcccccccceeeeeeeccceEEEEEeccCchhhccccceeeecCCCceEEEEEeehhhhhhhhhhhhHHHHhhcc
Confidence            3456789999999899999999999999999999877654 567899999999999999999999999999999877653


Q ss_pred             -CCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCC---CCCHHHHHHHHH
Q psy13390        169 -SNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKL---ATNVEEAFIDTA  223 (245)
Q Consensus       169 -~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~~~~~i~  223 (245)
                       +++|++|||||+|+.+.+.++.++++.+++.+++++++|||++   +.||+++|.+|+
T Consensus       107 ~~~~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~~~~~~V~e~F~~lA  165 (165)
T d1z06a1         107 ANDIPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDHVEAIFMTLA  165 (165)
T ss_dssp             CSCCCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSCHHHHHHHHC
T ss_pred             CCCCeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccCCcCcCHHHHHHHhC
Confidence             6899999999999988888999999999999999999999997   559999998873

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2.7e-23  Score=155.04  Aligned_cols=137  Identities=34%  Similarity=0.635  Sum_probs=120.0

Q ss_pred             CCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-
Q psy13390         90 GSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-  168 (245)
Q Consensus        90 ~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-  168 (245)
                      ....+.+|++.++........+..+.+.+||++|...+...+..++..+++++++||.+++.|++.+..|+..+..... 
T Consensus        31 ~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~  110 (174)
T d1wmsa_          31 FDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADV  110 (174)
T ss_dssp             CCC----CCSEEEEEEEEEETTEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHTC
T ss_pred             CCCccccceeeeeeeeeeeecCceeeEeeecccCcceehhhhhhhhhccceEEEEEeeecccccchhhhHHHHHHHHhcc
Confidence            3557889999999999999999999999999999999999999999999999999999999999999999988765432 


Q ss_pred             ---CCCeEEEEEeCCCCccCcccCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        169 ---SNMVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       169 ---~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                         .++|+++||||+|+.+ +.++.+++..+++..+ +++++|||++|.||+++|+++++.++
T Consensus       111 ~~~~~~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il  172 (174)
T d1wmsa_         111 KEPESFPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL  172 (174)
T ss_dssp             SCTTTSCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccCCCceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHh
Confidence               4789999999999854 6788999999998764 88999999999999999999999885

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.91  E-value=1.5e-23  Score=157.90  Aligned_cols=141  Identities=34%  Similarity=0.614  Sum_probs=123.3

Q ss_pred             CCCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC--
Q psy13390         91 SSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN--  168 (245)
Q Consensus        91 ~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~--  168 (245)
                      ...+.||+|.++....+...+..+.+.+|||+|...+...+..++..+|++++|||.+++.+++.+..|+..+..+..  
T Consensus        28 ~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~  107 (184)
T d1vg8a_          28 SNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPR  107 (184)
T ss_dssp             CSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCS
T ss_pred             CCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccccccccccCccEEEEeecccchhhhhcchhhHHHHHHHhccc
Confidence            456889999999999999999999999999999999999999999999999999999999999999999988866532  


Q ss_pred             --CCCeEEEEEeCCCCccCcccCHHHHHHHHHH-cCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390        169 --SNMVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE  232 (245)
Q Consensus       169 --~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  232 (245)
                        .++|+++|+||+|+.+ +.+..++...++.. .++++++|||++|.||+++|+++++.+.++..+
T Consensus       108 ~~~~ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~~~~~  173 (184)
T d1vg8a_         108 DPENFPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQETE  173 (184)
T ss_dssp             SGGGSCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHHH
T ss_pred             cccCCCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHHHhcccc
Confidence              4689999999999865 44666666666654 578999999999999999999999998876554

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.7e-23  Score=155.17  Aligned_cols=137  Identities=14%  Similarity=0.282  Sum_probs=114.8

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc---C
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS---N  168 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~---~  168 (245)
                      ..+.+|.+.++ ...+.+++..+.+.+|||+|+..+     .|++++|++|+|||++++.||+.+..|+..+....   .
T Consensus        31 ~~~~~t~~~~~-~~~i~v~~~~~~l~i~Dt~g~~~~-----~~~~~ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~  104 (175)
T d2bmja1          31 QVLEKTESEQY-KKEMLVDGQTHLVLIREEAGAPDA-----KFSGWADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGR  104 (175)
T ss_dssp             CCCCCSSCEEE-EEEEEETTEEEEEEEEECSSCCCH-----HHHHHCSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--C
T ss_pred             CCcCCccceeE-EEEeecCceEEEEEEeeccccccc-----ccccccceeEEEeecccchhhhhhHHHHHHHHHHhhccc
Confidence            34567777666 677789999999999999999864     37899999999999999999999999988876543   2


Q ss_pred             CCCeEEEEEeCCCCc--cCcccCHHHHHHHHHH-cCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhcCC
Q psy13390        169 SNMVIMLIGNKSDLD--ARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGV  234 (245)
Q Consensus       169 ~~~piivv~nK~Dl~--~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~~~  234 (245)
                      ..+|+++|+||.|+.  ..+.++.+++..++.. ++++|++|||++|.||+++|..+++.++....+++
T Consensus       105 ~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~~~~  173 (175)
T d2bmja1         105 GGLALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRKQQQ  173 (175)
T ss_dssp             CCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHHHHhhhhcc
Confidence            578999999998874  3466888888888654 56889999999999999999999999988876654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.86  E-value=1.6e-22  Score=149.43  Aligned_cols=131  Identities=21%  Similarity=0.281  Sum_probs=100.9

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  170 (245)
                      ..+.||+|...    ..++.+.+.+.+|||+|++.++..++.+++.++++++|||+++..++.....++....... ..+
T Consensus        28 ~~~~~t~~~~~----~~~~~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~  103 (165)
T d1ksha_          28 DTISPTLGFNI----KTLEHRGFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAG  103 (165)
T ss_dssp             SSCCCCSSEEE----EEEEETTEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred             CcccceEeeee----eeccccccceeeeecCcchhhhhHHHhhhhhhhcceeeeecccchhHHHHHHhhhhhhhhcccCC
Confidence            44567777543    3334455789999999999999999999999999999999999999988887766655433 367


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHH-----HHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFA-----REHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +|+++|+||+|+.+...  .++.....     ....+++++|||++|+||+++|+||++.+..
T Consensus       104 ~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         104 ATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             CEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CceEEEEeccccccccC--HHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence            99999999999975443  22222221     1224578999999999999999999988753

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.86  E-value=2.3e-22  Score=148.56  Aligned_cols=129  Identities=19%  Similarity=0.308  Sum_probs=102.1

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  170 (245)
                      ..+.||+|.++..  +..  ..+.+.+||++|++.+...|..++..++++++|||+++..++.....|+..+.+.. .++
T Consensus        29 ~~~~~T~~~~~~~--~~~--~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~  104 (164)
T d1zd9a1          29 EDMIPTVGFNMRK--ITK--GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQG  104 (164)
T ss_dssp             CSCCCCCSEEEEE--EEE--TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTT
T ss_pred             Ccccccceeeeee--eee--eeEEEEEeeccccccccccccccccccchhhcccccccccccchhhhhhhhhhhhhcccC
Confidence            4467899876643  333  34789999999999999999999999999999999999999999998888776554 368


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHH-----HHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGE-----VFAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~-----~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      +|++||+||+|+.+..  ...+..     ..+...+++++++||++|.|++++|+||++.+
T Consensus       105 ~pi~lv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         105 IPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             CCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             CcEEEEEeccccchhh--hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHcc
Confidence            9999999999986432  222222     12233456799999999999999999998753

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.86  E-value=1.3e-22  Score=152.31  Aligned_cols=133  Identities=20%  Similarity=0.273  Sum_probs=100.2

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~  170 (245)
                      ..+.||.|..+...    ..+.+.+.+||++|++.++..++.+++++|++++|||++++.++.....|+....... ..+
T Consensus        43 ~~~~~t~~~~~~~~----~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~  118 (182)
T d1moza_          43 VTTKPTIGFNVETL----SYKNLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQD  118 (182)
T ss_dssp             EEECSSTTCCEEEE----EETTEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSS
T ss_pred             CccccccceEEEEE----eeCCEEEEEEecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCC
Confidence            44567777665332    2345789999999999999999999999999999999999999999988887765543 367


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHH-----HHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEV-----FAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      .|++||+||+|+...  ...++...     .+...++++++|||++|+||+++|+++++.+.+++
T Consensus       119 ~piliv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~~~  181 (182)
T d1moza_         119 AALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             CEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEeeccccc--cCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            999999999998642  23333222     22334567999999999999999999999987654

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.85  E-value=1.5e-22  Score=150.76  Aligned_cols=127  Identities=22%  Similarity=0.358  Sum_probs=98.1

Q ss_pred             CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCe
Q psy13390         94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSNMV  172 (245)
Q Consensus        94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~p  172 (245)
                      ..||.|..+    .......+.+.+||++|++.++..+..++++++++++|||+++..++..+..|+....+.. ..+.|
T Consensus        40 ~~~t~~~~~----~~~~~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~p  115 (173)
T d1e0sa_          40 TIPTVGFNV----ETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARQELHRIINDREMRDAI  115 (173)
T ss_dssp             EEEETTEEE----EEEEETTEEEEEEEESCCGGGHHHHGGGTTTCCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCE
T ss_pred             ccceeeeeE----EEeeccceeeEEecCCCcchhhhHHHhhhcccceEEEEEecccchhHHHHHHHHHHHhhhcccccce
Confidence            345555443    3334455789999999999999999999999999999999999999999988887766543 36799


Q ss_pred             EEEEEeCCCCccCcccCHHHHHH-----HHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        173 IMLIGNKSDLDARREVKKEEGEV-----FAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       173 iivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      +++|+||+|+.+..  ...+...     .+...++++++|||++|+||+++|+||.+.+
T Consensus       116 iiiv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         116 ILIFANKQDLPDAM--KPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             EEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             eeeeeecccccccc--cHHHHHHHHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHhc
Confidence            99999999996432  2222221     2233456799999999999999999998764

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.83  E-value=8e-22  Score=147.14  Aligned_cols=128  Identities=22%  Similarity=0.293  Sum_probs=99.4

Q ss_pred             CCCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CC
Q psy13390         92 SGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SN  170 (245)
Q Consensus        92 ~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~  170 (245)
                      ..+.|++|.++.  .+..  ..+.+.+||++|++.++..++.+++.+|++++|||+++..++..+..|+..+..... .+
T Consensus        42 ~~~~~~~~~~~~--~i~~--~~~~~~i~d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~  117 (176)
T d1fzqa_          42 SHITPTQGFNIK--SVQS--QGFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSC  117 (176)
T ss_dssp             EEEEEETTEEEE--EEEE--TTEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTT
T ss_pred             CcceeeeeeeEE--Eecc--CCeeEeEeeccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCC
Confidence            445677775543  2333  447899999999999999999999999999999999999999999888777655433 67


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHH-----HHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEV-----FAREHGLVFMETSAKLATNVEEAFIDTAKE  225 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  225 (245)
                      +|++||+||+|+....  ......+     .+....+++++|||++|+|++++|+|+++.
T Consensus       118 ~pillv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         118 VPVLIFANKQDLLTAA--PASEIAEGLNLHTIRDRVWQIQSCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             CCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             CeEEEEEEeccccccc--cHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence            9999999999996543  2222222     122345679999999999999999999875

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.76  E-value=4.8e-19  Score=129.35  Aligned_cols=119  Identities=23%  Similarity=0.373  Sum_probs=95.2

Q ss_pred             EECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCCeEEEEEeCCCCccCc
Q psy13390        108 TIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNMVIMLIGNKSDLDARR  186 (245)
Q Consensus       108 ~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~piivv~nK~Dl~~~~  186 (245)
                      ..+...+.+.+||++|.+.+...+..+++.+++++++||.+++.++..+..|+..+..... ...|+++++||.|+....
T Consensus        38 ~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~  117 (160)
T d1r8sa_          38 TVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM  117 (160)
T ss_dssp             EEECSSCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             EEeeeeEEEEEecCCCcccchhhhhhhhccceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc
Confidence            4455667899999999999999999999999999999999999999998888777765443 678999999999986432


Q ss_pred             c---cCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        187 E---VKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       187 ~---~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      .   +.......++...++++++|||++|+||+++|++|++++
T Consensus       118 ~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         118 NAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             CHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence            1   111112223344567899999999999999999998764

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.69  E-value=4e-17  Score=122.89  Aligned_cols=123  Identities=17%  Similarity=0.193  Sum_probs=89.1

Q ss_pred             EEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhH-----------HHHHHHHHHHHhhcCCCCeEE
Q psy13390        106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-----------NHLTTWLEDARQHSNSNMVIM  174 (245)
Q Consensus       106 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~-----------~~~~~~~~~~~~~~~~~~pii  174 (245)
                      +..++...+.+.+|||+|++.++.+|..|++.++++++|+|.++..++           +....|...+......+.|++
T Consensus        34 ~~~~~~~~~~~~i~D~~Gq~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~  113 (195)
T d1svsa1          34 ETHFTFKDLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSII  113 (195)
T ss_dssp             EEEEEETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEE
T ss_pred             EEEEEeeeeeeeeeccccccccccchhhcccCCceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEE
Confidence            344555667899999999999999999999999999999999988765           233345555544444789999


Q ss_pred             EEEeCCCCccCc---------------ccCHHHHHH-----HHHH------cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        175 LIGNKSDLDARR---------------EVKKEEGEV-----FARE------HGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       175 vv~nK~Dl~~~~---------------~~~~~~~~~-----~~~~------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +++||+|+...+               .....+...     +...      ..+.+++|||++|.||+++|+.+.+.|++
T Consensus       114 lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il~  193 (195)
T d1svsa1         114 LFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIK  193 (195)
T ss_dssp             EEEECHHHHHHHTTTSCGGGTCTTCCSCSSHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEeccchhhhhhccchHHHHHhhhhcCcccHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHHh
Confidence            999999963211               111122211     1111      23457899999999999999999887765

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=1.5e-17  Score=125.70  Aligned_cols=133  Identities=14%  Similarity=0.103  Sum_probs=99.0

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChh-----------hHHHHHHHHH
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE-----------TFNHLTTWLE  161 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~-----------s~~~~~~~~~  161 (245)
                      .+.||+|.++.    .+....+.+++||++|++.++..|..+++.+++++++||.++..           .++....|..
T Consensus        28 ~~~pTiG~~~~----~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~  103 (200)
T d2bcjq2          28 SGVPTTGIIEY----PFDLQSVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRT  103 (200)
T ss_dssp             SCCCCCSCEEE----EEECSSCEEEEEECCCSTTGGGGGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHH
T ss_pred             CCCceeeEEEE----EEeccceeeeeccccccccccccccccccccceeeEeeeccchhhhhhhhccccchHHHHHHHHH
Confidence            36799997753    34456678999999999999999999999999999999998764           3455556777


Q ss_pred             HHHhhcCCCCeEEEEEeCCCCccCcc----------------cCHHHHHHHHH----------HcCCcEEEeccCCCCCH
Q psy13390        162 DARQHSNSNMVIMLIGNKSDLDARRE----------------VKKEEGEVFAR----------EHGLVFMETSAKLATNV  215 (245)
Q Consensus       162 ~~~~~~~~~~piivv~nK~Dl~~~~~----------------~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i  215 (245)
                      .+......+.|+++++||+|+...+.                ........+..          .+.+.+++|||++|.||
T Consensus       104 ~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni  183 (200)
T d2bcjq2         104 IITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENI  183 (200)
T ss_dssp             HHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHH
T ss_pred             HHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhH
Confidence            66666557899999999999742211                11222222221          12344789999999999


Q ss_pred             HHHHHHHHHHHHHH
Q psy13390        216 EEAFIDTAKEIYEK  229 (245)
Q Consensus       216 ~~~~~~i~~~i~~~  229 (245)
                      .++|+.+.+.|++.
T Consensus       184 ~~vF~~i~~~I~~~  197 (200)
T d2bcjq2         184 RFVFAAVKDTILQL  197 (200)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999998888754

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.65  E-value=3.6e-16  Score=116.26  Aligned_cols=109  Identities=17%  Similarity=0.074  Sum_probs=77.3

Q ss_pred             EEEEEEEcCCChhhh--------hhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q psy13390        113 QIKLQIWDTAGQEAF--------RSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDA  184 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~--------~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  184 (245)
                      ...+.+|||+|....        ......++++||++++|+|++++....+ ..|+..+.... .++|+++|+||+|+..
T Consensus        52 ~~~~~~~DtpG~~~~~~~~~~~~~~~~~~~~~~ad~il~v~D~~~~~~~~~-~~i~~~l~~~~-~~~piilv~NK~Dl~~  129 (178)
T d1wf3a1          52 RRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPED-ELVARALKPLV-GKVPILLVGNKLDAAK  129 (178)
T ss_dssp             TEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSEEEEEEETTSCCCHHH-HHHHHHHGGGT-TTSCEEEEEECGGGCS
T ss_pred             eeeeeecccccccccccccchhcccccccccccccceeeeechhhhhcccc-cchhhheeccc-cchhhhhhhccccccc
Confidence            356999999997332        2333456889999999999988655433 33444444433 5789999999999864


Q ss_pred             CcccCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        185 RREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      ..   .+....+....+ ..++++||++|.|++++++++++.+
T Consensus       130 ~~---~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         130 YP---EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  169 (178)
T ss_dssp             SH---HHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             CH---HHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhC
Confidence            32   233334444444 4589999999999999999998765

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.62  E-value=7.3e-16  Score=114.18  Aligned_cols=113  Identities=20%  Similarity=0.282  Sum_probs=85.9

Q ss_pred             eEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhc-CCCCeEEEEEeCCCCccCcccCH
Q psy13390        112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHS-NSNMVIMLIGNKSDLDARREVKK  190 (245)
Q Consensus       112 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~piivv~nK~Dl~~~~~~~~  190 (245)
                      ..+.+.+||++|.+.++..+..++..++++++++|.++..+++....+........ ....|+++|+||+|+.....  .
T Consensus        57 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~--~  134 (177)
T d1zj6a1          57 NNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT--V  134 (177)
T ss_dssp             TTEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC--H
T ss_pred             cceEEEEeccccccccccchhhhhccceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc--H
Confidence            34679999999999999999999999999999999999999988776655554433 26899999999999864432  2


Q ss_pred             HHHHHH-----HHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        191 EEGEVF-----AREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       191 ~~~~~~-----~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      .+....     +...+++++++||++|+|++++|++|.+.+
T Consensus       135 ~~i~~~~~~~~~~~~~~~~~~~Sa~tg~Gi~e~~~~L~~~l  175 (177)
T d1zj6a1         135 AEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRL  175 (177)
T ss_dssp             HHHHHHHTGGGCCSSCEEEEECBTTTTBTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhHhcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            222222     223456799999999999999999999875

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=2e-15  Score=114.03  Aligned_cols=133  Identities=20%  Similarity=0.208  Sum_probs=87.5

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhh----------HHHHHHHHHH
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRET----------FNHLTTWLED  162 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s----------~~~~~~~~~~  162 (245)
                      .+.||+|....    .+..+.+.+.+||++|++.++..|..+++++++++++||.++..+          ++....++..
T Consensus        27 ~~~pTiG~~~~----~~~~~~~~~~~~D~~gq~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (200)
T d1zcba2          27 GQDPTKGIHEY----DFEIKNVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFET  102 (200)
T ss_dssp             SCCCCSSEEEE----EEEETTEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHH
T ss_pred             CCCCeeeeEEE----EEeeeeeeeeeecccceeeecccccccccccceeEEEEEcCCcceeeeecccchhhhHHHHHHHH
Confidence            45689996542    334456779999999999999999999999999999999997543          3444445555


Q ss_pred             HHhh-cCCCCeEEEEEeCCCCccCc----------------ccCHHHHHHHHHH-----------cCCcEEEeccCCCCC
Q psy13390        163 ARQH-SNSNMVIMLIGNKSDLDARR----------------EVKKEEGEVFARE-----------HGLVFMETSAKLATN  214 (245)
Q Consensus       163 ~~~~-~~~~~piivv~nK~Dl~~~~----------------~~~~~~~~~~~~~-----------~~~~~~~~Sa~~~~~  214 (245)
                      +... ...++|+++++||+|+.+.+                .-..+.+..+...           ..+.++++||+++.|
T Consensus       103 i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~n  182 (200)
T d1zcba2         103 IVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTEN  182 (200)
T ss_dssp             HHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHH
T ss_pred             HhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHH
Confidence            4433 23689999999999974311                0112223322211           124467899999999


Q ss_pred             HHHHHHHHHHHHHHH
Q psy13390        215 VEEAFIDTAKEIYEK  229 (245)
Q Consensus       215 i~~~~~~i~~~i~~~  229 (245)
                      |+++|+.+.+.|++.
T Consensus       183 i~~vf~~v~d~i~~~  197 (200)
T d1zcba2         183 IRLVFRDVKDTILHD  197 (200)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998877654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.59  E-value=2.2e-15  Score=110.38  Aligned_cols=118  Identities=20%  Similarity=0.317  Sum_probs=91.1

Q ss_pred             CeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHh-hcCCCCeEEEEEeCCCCccCcc--
Q psy13390        111 GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQ-HSNSNMVIMLIGNKSDLDARRE--  187 (245)
Q Consensus       111 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~piivv~nK~Dl~~~~~--  187 (245)
                      .+.+.+.+||++|.+.+...+..++..++++++++|+++..++.....+...... ......|+++++||+|+.....  
T Consensus        46 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~~~~  125 (169)
T d1upta_          46 YKNLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAMTSS  125 (169)
T ss_dssp             ETTEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCCHH
T ss_pred             cCceEEEEeeccccccccccchhhhhhhhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccccHH
Confidence            3456799999999999999999999999999999999988888777765444433 3336789999999999965332  


Q ss_pred             -cCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        188 -VKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       188 -~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                       +.......++....+++++|||++|.||+++|++|++.+.+
T Consensus       126 ~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         126 EMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             HHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence             11122222344456789999999999999999999987743

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=1.3e-14  Score=105.54  Aligned_cols=126  Identities=17%  Similarity=0.189  Sum_probs=96.0

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcC-CCC
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSN-SNM  171 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~  171 (245)
                      .+.||++.+.    ..+........+||+.|...+...++.++..++++++++|.++..++.....|......... .+.
T Consensus        27 ~~~~t~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (166)
T d2qtvb1          27 TLQPTWHPTS----EELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDV  102 (166)
T ss_dssp             CCCCCCSCEE----EEECCTTCCEEEEECCCSGGGGGGGGGGCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTC
T ss_pred             eeeceeeEeE----EEeccCCeeEEEEeeccchhhhhhHhhhhhheeeeeeeccccchhhhhhhhHHHHhhhhhhccCCc
Confidence            4566776544    34444556789999999999999999999999999999999999998888777666655443 688


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHH------------HHcCCcEEEeccCCCCCHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFA------------REHGLVFMETSAKLATNVEEAFIDTAK  224 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~~i~~~~~~i~~  224 (245)
                      |+++++||.|+...  ....+.....            ....+++++|||++|+|++++|+||.+
T Consensus       103 ~i~i~~~k~d~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         103 PFVILGNKIDAPNA--VSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             CEEEEEECTTSSSC--CCHHHHHHHHTCSSCCC---CCSSCCEEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             eEEEEecccccccc--CCHHHHHHHhhhhhhhHHHhhcccCCCEEEEeeCCCCCCHHHHHHHHhC
Confidence            99999999998643  2333322221            122356899999999999999999875

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.54  E-value=2.8e-15  Score=109.30  Aligned_cols=106  Identities=19%  Similarity=0.234  Sum_probs=78.6

Q ss_pred             EEEEEEEcCCChhhhh--------hhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCcc
Q psy13390        113 QIKLQIWDTAGQEAFR--------SITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDA  184 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~--------~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~  184 (245)
                      ...+.+||++|.....        .....++..+|++++++|..+..+++....|...+.... .++|+++|+||+|+..
T Consensus        48 ~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~-~~~~iilv~NK~Dl~~  126 (161)
T d2gj8a1          48 GMPLHIIDTAGLREASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLP-AKLPITVVRNKADITG  126 (161)
T ss_dssp             TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSC-TTCCEEEEEECHHHHC
T ss_pred             CceeeeccccccccccccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcc-cccceeeccchhhhhh
Confidence            3468899999963322        123457889999999999998887777666655555444 5799999999999864


Q ss_pred             CcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        185 RREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       185 ~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      ....       +....+.+++++||++|.||++++++|.+.+
T Consensus       127 ~~~~-------~~~~~~~~~~~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         127 ETLG-------MSEVNGHALIRLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             CCCE-------EEEETTEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             hHHH-------HHHhCCCcEEEEECCCCCCHHHHHHHHHhhC
Confidence            3221       1122456799999999999999999998753

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.53  E-value=4.5e-14  Score=104.84  Aligned_cols=114  Identities=13%  Similarity=-0.009  Sum_probs=77.1

Q ss_pred             CeEEEEEEEcCCChhhh-------hhhhHhhccCCcEEEEEEeCCChh--hHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q psy13390        111 GKQIKLQIWDTAGQEAF-------RSITRSYYRGAAGALLVYDITRRE--TFNHLTTWLEDARQHSNSNMVIMLIGNKSD  181 (245)
Q Consensus       111 ~~~~~~~l~Dt~G~~~~-------~~~~~~~~~~~d~vi~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~piivv~nK~D  181 (245)
                      .....+.+|||+|....       ....-..+..++++++++|.....  ++.....|+....... .++|+++|+||+|
T Consensus        46 ~~~~~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~p~iiv~NK~D  124 (180)
T d1udxa2          46 SEEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPAL-LRRPSLVALNKVD  124 (180)
T ss_dssp             SSSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHH-HHSCEEEEEECCT
T ss_pred             cCCCeEEEcCCCeeecCchHHHHHHHHHHHHHHhhhhhhhhcccccccccchhhhhhhhhcccccc-chhhhhhhhhhhh
Confidence            33446899999995321       112234678999999999986532  3333333433322211 3579999999999


Q ss_pred             CccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        182 LDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       182 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      +...+.  .+.........+.+++++||++|.|++++++.+.+.+.
T Consensus       125 ~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l~  168 (180)
T d1udxa2         125 LLEEEA--VKALADALAREGLAVLPVSALTGAGLPALKEALHALVR  168 (180)
T ss_dssp             TSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            865432  23334445567889999999999999999998888774

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.52  E-value=2.4e-14  Score=105.40  Aligned_cols=126  Identities=20%  Similarity=0.102  Sum_probs=81.4

Q ss_pred             cceeeEEEEEECCeEEEEEEEcCCChhhh---------hhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCC
Q psy13390         99 GVEFGARMITIDGKQIKLQIWDTAGQEAF---------RSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNS  169 (245)
Q Consensus        99 g~~~~~~~~~~~~~~~~~~l~Dt~G~~~~---------~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~  169 (245)
                      |.+.......+......+.+||++|....         ......++..+|+++++.|.+++..... ..++..+...   
T Consensus        33 ~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~ad~i~~~~~~~~~~~~~~-~~~~~~l~~~---  108 (171)
T d1mkya1          33 GVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREADLVLFVVDGKRGITKED-ESLADFLRKS---  108 (171)
T ss_dssp             ----CCSEEEEEETTEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCSEEEEEEETTTCCCHHH-HHHHHHHHHH---
T ss_pred             ceeeccccccccccccccccccccceeeeeccccccccccccccccccCcEEEEeecccccccccc-cccccccccc---
Confidence            33333333344445567999999995222         2233456789999999999987655443 3344444443   


Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      ++|+++|+||+|+..+.  ..+....+......+++++||++|.|++++++++.+.+.++.
T Consensus       109 ~~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~~l~e~~  167 (171)
T d1mkya1         109 TVDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKG  167 (171)
T ss_dssp             TCCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTT
T ss_pred             cccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHhCCCCC
Confidence            47999999999986321  122222232233456899999999999999999999876643

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.47  E-value=8.4e-14  Score=103.32  Aligned_cols=112  Identities=17%  Similarity=0.088  Sum_probs=80.9

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccC--H
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVK--K  190 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~  190 (245)
                      ...+.++|++|+..|.......+..+|++++|+|++++...+....| ..+..   .++|+++|+||+|+.......  .
T Consensus        58 ~~~~~~~d~~g~~~~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~-~~~~~---~~~p~iiv~NKiD~~~~~~~~~~~  133 (179)
T d1wb1a4          58 NYRITLVDAPGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHM-LILDH---FNIPIIVVITKSDNAGTEEIKRTE  133 (179)
T ss_dssp             TEEEEECCCSSHHHHHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHH-HHHHH---TTCCBCEEEECTTSSCHHHHHHHH
T ss_pred             Cccccccccccccccccchhhhhhhccccccccccccccchhhhhhh-hhhhh---cCCcceeccccccccCHHHHHHHH
Confidence            35689999999999988888899999999999999987554433222 22222   468999999999986432211  1


Q ss_pred             HHHHHHHHH----cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        191 EEGEVFARE----HGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       191 ~~~~~~~~~----~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +..+.+...    .+.+++++||++|.|++++++.+.+.+.+
T Consensus       134 ~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         134 MIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             HHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            112222221    23579999999999999999999888754

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.47  E-value=3.7e-14  Score=108.85  Aligned_cols=132  Identities=17%  Similarity=0.183  Sum_probs=90.9

Q ss_pred             CCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChh----------hHHHHHHHHHHH
Q psy13390         94 SSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRE----------TFNHLTTWLEDA  163 (245)
Q Consensus        94 ~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~----------s~~~~~~~~~~~  163 (245)
                      +.||+|.+.  ..+.++  .+.+.+||++|++.++..|..++++++++++|+|.++..          .+.+...++..+
T Consensus        31 ~~pTiG~~~--~~~~~~--~~~~~~~D~~Gq~~~r~~w~~~~~~~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~i  106 (221)
T d1azta2          31 VVLTSGIFE--TKFQVD--KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSI  106 (221)
T ss_dssp             CCCCCSCEE--EEEEET--TEEEEEEECCCSTTTTTGGGGGCTTCSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHH
T ss_pred             cCCCCCeEE--EEEEEC--cEEEEEEecCccceeccchhhhcccccceEEEEEccccccccccccchHHHHHHHHHHHHH
Confidence            458999553  334444  477999999999999999999999999999999998642          233333334444


Q ss_pred             Hhh-cCCCCeEEEEEeCCCCccCcc----cC--------------------------HHHHHHH-----HHH--------
Q psy13390        164 RQH-SNSNMVIMLIGNKSDLDARRE----VK--------------------------KEEGEVF-----ARE--------  199 (245)
Q Consensus       164 ~~~-~~~~~piivv~nK~Dl~~~~~----~~--------------------------~~~~~~~-----~~~--------  199 (245)
                      ... ...++|++|++||+|+.+.+.    ..                          ...+..+     ...        
T Consensus       107 l~~~~~~~~~iil~~NK~Dl~~~k~~~~~~~~~~~f~~~~~~~~~~~~~~~~g~~~~~~~a~~~i~~~f~~~~~~~~~~~  186 (221)
T d1azta2         107 WNNRWLRTISVILFLNKQDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGR  186 (221)
T ss_dssp             HTCGGGSSCEEEEEEECHHHHHHHHHHCSSCHHHHCGGGGGCCCCTTCCCCTTCCHHHHHHHHHHHHHHHHHHTSSCTTS
T ss_pred             hcChhhCCCcEEEEechhhhhhhhhccCcccHHHhCccccccCCcccccccCCCchhHHHHHHHHHHHHHHHhccCCCCC
Confidence            333 236899999999999853210    00                          1122222     111        


Q ss_pred             cCCcEEEeccCCCCCHHHHHHHHHHHHHHH
Q psy13390        200 HGLVFMETSAKLATNVEEAFIDTAKEIYEK  229 (245)
Q Consensus       200 ~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~  229 (245)
                      ..+-.+++||+++.+|+.+|+.+.+.|++.
T Consensus       187 ~~~y~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         187 HYCYPHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             CCEEEEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             CceeeeecceeccHHHHHHHHHHHHHHHHH
Confidence            112357899999999999999988777754

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.46  E-value=4.8e-13  Score=99.10  Aligned_cols=128  Identities=19%  Similarity=0.209  Sum_probs=89.2

Q ss_pred             CCCCCCcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhh-cCCCC
Q psy13390         93 GSSSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQH-SNSNM  171 (245)
Q Consensus        93 ~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~  171 (245)
                      ...|+.+.++..  +.+++  ..+.+||+.++..+...+..+++.++++++++|.++...+.....++...... ...++
T Consensus        40 ~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~  115 (186)
T d1f6ba_          40 QHVPTLHPTSEE--LTIAG--MTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANV  115 (186)
T ss_dssp             ---CCCCCSCEE--EEETT--EEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTS
T ss_pred             ceecccccceeE--EEecc--cccccccccchhhhhhHHhhhhcccceeeeeeeccCccchHHHHHHHHHhhcccccCCC
Confidence            345666655433  34444  45889999999999999999999999999999999998888776655444432 23689


Q ss_pred             eEEEEEeCCCCccCcccCHHHHHHHHH-----------------HcCCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        172 VIMLIGNKSDLDARREVKKEEGEVFAR-----------------EHGLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       172 piivv~nK~Dl~~~~~~~~~~~~~~~~-----------------~~~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      |+++++||.|++..  ....+......                 ..++++++|||++|+|++++|+|+++++
T Consensus       116 ~~li~~~K~D~~~~--~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         116 PILILGNKIDRPEA--ISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CEEEEEECTTSTTC--CCHHHHHHHHTCTTTCCCSSCCCTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             ceEEEEeccCcccc--CCHHHHHHHHhhcccchhhhhhhHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence            99999999998642  23333333221                 1234689999999999999999998754

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=8.6e-14  Score=102.58  Aligned_cols=59  Identities=39%  Similarity=0.509  Sum_probs=56.0

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|++|||||+||.+.|+++.++++.++..++++|+||||++|.||+++|..+++++..+
T Consensus       112 ~piilvgnK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sak~g~~i~~~f~~l~~~i~~r  170 (172)
T d2g3ya1         112 IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKELFEGIVRQVRLR  170 (172)
T ss_dssp             SCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeccccccccccccHHHHHHHHHHcCCeEEEEeCCCCcCHHHHHHHHHHHHHHc
Confidence            58999999999999999999999999999999999999999999999999999998654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.7e-14  Score=101.87  Aligned_cols=60  Identities=40%  Similarity=0.507  Sum_probs=56.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|++|||||+||.+.++++.++++.+++.++++|+||||++|.||+++|..+++++..+.
T Consensus       106 ~piilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~~f~~l~~~i~~~~  165 (168)
T d2gjsa1         106 VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQALFEGVVRQIRLRR  165 (168)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             ceEEEeecccchhhhcchhHHHHHHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999999999999999999999999987654

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=9.9e-14  Score=101.83  Aligned_cols=59  Identities=39%  Similarity=0.628  Sum_probs=55.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCC-cHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~f~~l~~~~~~~   59 (245)
                      +|++|||||+||.+.|.|+.+++..+|+.++++|+||||++|. ||+++|..+++.+.++
T Consensus       107 ~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~Saktg~gnV~e~F~~l~~~i~~~  166 (168)
T d2atva1         107 VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNITEIFYELCREVRRR  166 (168)
T ss_dssp             CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred             cceeeeccchhhhhhccCcHHHHHHHHHHhCCeEEEEccccCCcCHHHHHHHHHHHHHHh
Confidence            5899999999999989999999999999999999999999998 6999999999998765

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=8.3e-14  Score=101.79  Aligned_cols=57  Identities=35%  Similarity=0.343  Sum_probs=54.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|++|||||+|+.++|+++.++++.+++.++++|+|+||++|.||+++|..++++++
T Consensus       107 ~~iilVgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e~f~~l~~~~l  163 (164)
T d1z2aa1         107 IPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAEKHL  163 (164)
T ss_dssp             CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             ceEEEeeccCCcccceeeeehhhHHHHHHcCCEEEEeccCCCcCHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999999999999999999999999875

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.43  E-value=1e-13  Score=101.77  Aligned_cols=57  Identities=40%  Similarity=0.613  Sum_probs=54.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++||||+||.+.++++.++++.+++.++++|+||||++|.||+++|..+++++.
T Consensus       110 ~piiivgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~  166 (168)
T d1u8za_         110 VPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDKVFFDLMREIR  166 (168)
T ss_dssp             SCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CcEEEEeccccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999999999999999999999999875

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=2.4e-13  Score=100.17  Aligned_cols=60  Identities=35%  Similarity=0.624  Sum_probs=56.3

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|++|||||+||.+.+.+..+++..+++.++++|+||||++|.||+++|..+++.+.+..
T Consensus       112 ~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~k~~  171 (173)
T d2fn4a1         112 FPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQ  171 (173)
T ss_dssp             CCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             CceEEEEEeechhhccccchhhhhHHHHhcCCEEEEEeCCCCcCHHHHHHHHHHHHHHHh
Confidence            589999999999998999999999999999999999999999999999999999987653

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.5e-13  Score=100.62  Aligned_cols=57  Identities=35%  Similarity=0.487  Sum_probs=54.3

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|++|||||+||...|.++.+++..+|+.++++|+||||++|.||+++|..+++.+.
T Consensus       110 ~piilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~Sak~~~~v~~~f~~li~~~~  166 (167)
T d1xtqa1         110 IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVDVFRRIILEAE  166 (167)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             cceeeeccccccccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHHhc
Confidence            589999999999999999999999999999999999999999999999999998874

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.40  E-value=3.3e-13  Score=99.08  Aligned_cols=58  Identities=33%  Similarity=0.520  Sum_probs=54.6

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCC-cHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLAT-NVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~~~f~~l~~~~~~   58 (245)
                      +|++|||||+|+.+.+.++.+++.++|+.++++|+|+|||++. ||+++|..+++.+.+
T Consensus       110 ~p~ilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         110 FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             CCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             ccEEEEecccchhhhceeehhhHHHHHHHcCCEEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence            5899999999999999999999999999999999999999985 999999999998865

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=4.6e-13  Score=98.61  Aligned_cols=62  Identities=82%  Similarity=1.181  Sum_probs=58.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhcc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE   62 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~   62 (245)
                      +|++|||||+|+...+.+..+++..+++.++++|+|+||++|.||+++|..+++.+.++.++
T Consensus       109 ~piilv~nK~D~~~~~~~~~~~~~~~a~~~~~~~~e~Sa~tg~~V~e~f~~i~~~i~~~~~~  170 (173)
T d2a5ja1         109 MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTACNVEEAFINTAKEIYRKIQQ  170 (173)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHHHHHHHHHHHHHHHHT
T ss_pred             CeEEEEecCCchhhhhhhHHHHHHHHHHHcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            58999999999998899999999999999999999999999999999999999999877654

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=2.5e-13  Score=99.48  Aligned_cols=58  Identities=36%  Similarity=0.570  Sum_probs=54.8

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      .|++|||||+|+..+|+|+.+++..+|+.++++|+||||++|.||+++|..|++++++
T Consensus       109 ~~~ilvgnK~Dl~~~~~v~~~e~~~~a~~~~~~~~e~Sak~~~~v~e~F~~l~~~i~~  166 (167)
T d1z08a1         109 ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEELFLDLCKRMIE  166 (167)
T ss_dssp             SEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHHHHHHHHHHHC
T ss_pred             cceeeeccccccccccccchHHHHHHHHHcCCeEEEEecCCCcCHHHHHHHHHHHHhh
Confidence            4789999999999999999999999999999999999999999999999999998863

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=4.6e-13  Score=98.40  Aligned_cols=59  Identities=42%  Similarity=0.683  Sum_probs=55.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|++|||||+|+...+.+..+++..+++.++++|+||||++|.||+++|..+++.+.+.
T Consensus       111 ~p~ilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~k~  169 (171)
T d2erya1         111 FPMILIGNKADLDHQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRVIRKF  169 (171)
T ss_dssp             CSEEEEEECTTCTTSCSSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeccchhhhccchHHHHHHHHHHcCCEEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            48999999999999999999999999999999999999999999999999999988544

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.7e-13  Score=100.80  Aligned_cols=56  Identities=46%  Similarity=0.592  Sum_probs=53.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|++|||||+|+...|+++.++++.+|+.++++|+||||++|.||+++|..+++.+
T Consensus       109 ~piilVgnK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~~  164 (171)
T d2erxa1         109 IPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKELFQELLNLE  164 (171)
T ss_dssp             CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHTC
T ss_pred             CcEEEEeecccccccccccHHHHHHHHHHcCCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence            58999999999998899999999999999999999999999999999999999765

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.39  E-value=1.2e-12  Score=95.01  Aligned_cols=104  Identities=20%  Similarity=0.106  Sum_probs=71.2

Q ss_pred             EEEEEEEcCCChhh--------hh-hhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390        113 QIKLQIWDTAGQEA--------FR-SITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD  183 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~--------~~-~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  183 (245)
                      ...+.+|||+|...        +. ......+..+|++++|+|++++...+...-+. .+     ...++++++||.|+.
T Consensus        47 ~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ii~v~d~~~~~~~~~~~~~~-~~-----~~~~~i~~~~k~d~~  120 (160)
T d1xzpa2          47 GILFRIVDTAGVRSETNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILE-RI-----KNKRYLVVINKVDVV  120 (160)
T ss_dssp             TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCSEEEEEEETTSCCCHHHHHHHH-HH-----TTSSEEEEEEECSSC
T ss_pred             CeeEEeccccccccCCccHHHHHHHHHHHHHHHhCCEEEEEEeCCCCcchhhhhhhh-hc-----ccccceeeeeecccc
Confidence            35688999999521        11 11223578899999999999887655433221 11     347899999999987


Q ss_pred             cCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHHHHHHHH
Q psy13390        184 ARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKE  225 (245)
Q Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~~~i~~~  225 (245)
                      +..  ..++... ....+.+++++||++|.|+++++++|.+.
T Consensus       121 ~~~--~~~~~~~-~~~~~~~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         121 EKI--NEEEIKN-KLGTDRHMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             CCC--CHHHHHH-HHTCSTTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             chh--hhHHHHH-HhCCCCcEEEEECCCCCCHHHHHHHHHhc
Confidence            532  3333222 22345789999999999999999988763

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.39  E-value=3.2e-13  Score=98.91  Aligned_cols=56  Identities=39%  Similarity=0.609  Sum_probs=53.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      .|++|||||+|+.+.|.+..++++.+|+.++++|+||||++|.||+++|..+++++
T Consensus       110 ~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         110 IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             SEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHHHHHHHHHC
T ss_pred             ceEEEecccchhccccchhHHHHHHHHHHcCCEEEEEecCCCCCHHHHHHHHHHhC
Confidence            48999999999999999999999999999999999999999999999999999876

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.38  E-value=1.8e-12  Score=96.17  Aligned_cols=107  Identities=21%  Similarity=0.141  Sum_probs=68.5

Q ss_pred             EEEEcCCChh-----------h----hhhhhHhhccCCcEEEEEEeCCChhhHHHHH----------HHHHHHHhhcCCC
Q psy13390        116 LQIWDTAGQE-----------A----FRSITRSYYRGAAGALLVYDITRRETFNHLT----------TWLEDARQHSNSN  170 (245)
Q Consensus       116 ~~l~Dt~G~~-----------~----~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~----------~~~~~~~~~~~~~  170 (245)
                      +.+|||||..           .    +.......++.+|++++|+|++.........          ..++.+..   .+
T Consensus        45 ~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~---~~  121 (184)
T d2cxxa1          45 HKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRE---LD  121 (184)
T ss_dssp             EEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHHGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHH---TT
T ss_pred             ceecccCCceeccccccccccccchhhhhhhhhcccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHH---cC
Confidence            6789999941           1    1122345678899999999997543322111          12222222   46


Q ss_pred             CeEEEEEeCCCCccCcccCHHHHHHHHHHcC-------CcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        171 MVIMLIGNKSDLDARREVKKEEGEVFAREHG-------LVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       171 ~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~-------~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +|+++|+||+|+.....   .....+.....       ..++++||++|.|++++++++.+.+.+
T Consensus       122 ~p~iiv~NK~D~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         122 IPTIVAVNKLDKIKNVQ---EVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             CCEEEEEECGGGCSCHH---HHHHHHHHHHTCCGGGHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeeeehhhhHH---HHHHHHHHHhcccccccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            89999999999754321   11122222221       238899999999999999999988865

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.38  E-value=4.4e-13  Score=103.11  Aligned_cols=115  Identities=19%  Similarity=0.085  Sum_probs=79.2

Q ss_pred             eEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccC--
Q psy13390        112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVK--  189 (245)
Q Consensus       112 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--  189 (245)
                      ....+.|+||||+..|...+...+..+|++|+|+|+.++..-+.. ..+..+..   .++|+|+|.||+|+.......  
T Consensus        68 ~~~~~~~iDtPGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~~~~-~~~~~~~~---~~~p~iivlNK~D~~~~~~~~~~  143 (227)
T d1g7sa4          68 TLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQ-EALNILRM---YRTPFVVAANKIDRIHGWRVHEG  143 (227)
T ss_dssp             TCCEEEEECCCTTSCCTTSBCSSSBSCSEEEEEEETTTCCCHHHH-HHHHHHHH---TTCCEEEEEECGGGSTTCCCCTT
T ss_pred             cccccccccccceecccccchhcccccceEEEEEecccCcccchh-HHHHHhhc---CCCeEEEEEECccCCCchhhhhh
Confidence            344689999999999888887889999999999999876554443 22333333   358999999999985432110  


Q ss_pred             -----------H-------HHHHH----HHHH--------------cCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        190 -----------K-------EEGEV----FARE--------------HGLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       190 -----------~-------~~~~~----~~~~--------------~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                                 .       .....    +...              ..++++.+||++|.|++++++.+.....+..
T Consensus       144 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~~  220 (227)
T d1g7sa4         144 RPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQYL  220 (227)
T ss_dssp             CCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHHH
Confidence                       0       00000    1110              1146899999999999999998887765544

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=2.8e-13  Score=99.22  Aligned_cols=57  Identities=44%  Similarity=0.685  Sum_probs=54.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|++|||||+|+.+.+.+..+++..+++.++++|+||||++|.||+++|..+++++.
T Consensus       109 ~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         109 VPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEccchhhcccchHHHHHHHHHHcCCeEEEECCCCCcCHHHHHHHHHHHHc
Confidence            589999999999988999999999999999999999999999999999999999874

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.37  E-value=4.7e-12  Score=95.79  Aligned_cols=91  Identities=13%  Similarity=0.203  Sum_probs=66.6

Q ss_pred             CCCCcceeeEEEEEECCeEEEEEEEcCCChhhhh-hhhHhhccCCcEEEEEEeCCChhhH-HHHHHHHHHHHhh---cCC
Q psy13390         95 SSGGGVEFGARMITIDGKQIKLQIWDTAGQEAFR-SITRSYYRGAAGALLVYDITRRETF-NHLTTWLEDARQH---SNS  169 (245)
Q Consensus        95 ~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~d~vi~v~d~~~~~s~-~~~~~~~~~~~~~---~~~  169 (245)
                      .||++.++....+. ....+.+.+||++|++.++ ..+..+++.++++++|+|+++..++ .+...|+..+...   ...
T Consensus        29 ~~t~~~~~~~~~~~-~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~  107 (207)
T d2fh5b1          29 QTSITDSSAIYKVN-NNRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKN  107 (207)
T ss_dssp             CCCCSCEEEEEECS-STTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred             cCCeeEEEEEEEEe-eeeeeeeeeeeccccccccchhhhhhhhhccccceEEEcccccccHHHHHHHHHHHHHhHHHhhc
Confidence            46777776554432 4556789999999999885 5678899999999999999987663 4544554444321   225


Q ss_pred             CCeEEEEEeCCCCccCc
Q psy13390        170 NMVIMLIGNKSDLDARR  186 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~  186 (245)
                      .+|++||+||+|++..+
T Consensus       108 ~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1         108 SPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             CCEEEEEEECTTSTTCC
T ss_pred             CCcEEEEEECcccCCCC
Confidence            68999999999997543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6.2e-13  Score=96.97  Aligned_cols=56  Identities=46%  Similarity=0.687  Sum_probs=53.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|++|||||+|+.+.+++..+++..+++.+++.|+||||++|.||+++|..+++.+
T Consensus       106 ~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         106 VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             SEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHS
T ss_pred             ceEEEEecccchhhhhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHhh
Confidence            58999999999998899999999999999999999999999999999999999875

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=9.4e-13  Score=96.71  Aligned_cols=59  Identities=39%  Similarity=0.647  Sum_probs=55.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|++|||||+|+.+.++++.+++..+++.++++|++|||++|.||+++|..+++++...
T Consensus       111 ~~~ilvgnK~D~~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gV~e~f~~l~~~l~~~  169 (171)
T d2ew1a1         111 VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLACRLISE  169 (171)
T ss_dssp             CEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             ccEEEEEeecccccccchhhhHHHHHHHhCCCEEEEEccCCCCCHHHHHHHHHHHHHHh
Confidence            58999999999998899999999999999999999999999999999999999988754

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1e-12  Score=97.80  Aligned_cols=61  Identities=36%  Similarity=0.508  Sum_probs=57.3

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ   61 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~   61 (245)
                      +|++|||||+||...+.++.+++..+++.++++|+|+||++|.||+++|..+++.+.++.+
T Consensus       122 ~~iilv~nK~Dl~~~~~v~~~e~~~~~~~~~~~~~e~Sak~~~~i~e~f~~l~~~i~~k~~  182 (186)
T d2f7sa1         122 PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEKAVETLLDLIMKRME  182 (186)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEeeeccchhhhcchHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHHHHH
Confidence            4899999999999999999999999999999999999999999999999999999987654

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.35  E-value=3.6e-12  Score=95.60  Aligned_cols=113  Identities=16%  Similarity=0.099  Sum_probs=79.2

Q ss_pred             eEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccC--
Q psy13390        112 KQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVK--  189 (245)
Q Consensus       112 ~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--  189 (245)
                      ....+.++||||+..|.......+..+|++++|+|+.++...+...+.+..+....  ..+++++.||+|+.+.....  
T Consensus        76 ~~~~~~~iDtPGh~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~--~~~iiv~inK~D~~d~~~~~~~  153 (195)
T d1kk1a3          76 FVRRVSFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIG--QKNIIIAQNKIELVDKEKALEN  153 (195)
T ss_dssp             EEEEEEEEECSSHHHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHT--CCCEEEEEECGGGSCHHHHHHH
T ss_pred             CceeEeeeccchhhhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhc--CccceeeeecccchhhHHHHHH
Confidence            34569999999999998888888999999999999998643333333333333332  24578899999986432211  


Q ss_pred             HHHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        190 KEEGEVFAREH---GLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       190 ~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      .+....+....   .++++++||++|.|++++++.+.+++
T Consensus       154 ~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~i  193 (195)
T d1kk1a3         154 YRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  193 (195)
T ss_dssp             HHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHHC
Confidence            12222233222   36799999999999999999887754

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=5.2e-13  Score=98.01  Aligned_cols=56  Identities=46%  Similarity=0.711  Sum_probs=53.6

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|++|||||+|+.++++++.+++..+++.++++|+||||++|.||+++|..|++++
T Consensus       112 ~~iilvgnK~Dl~~~~~v~~e~~~~~~~~~~~~~~e~SAk~g~~V~e~f~~l~~~i  167 (170)
T d1r2qa_         112 IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHTS
T ss_pred             ceEEeecccccccccccccHHHHHHHHHhcCCEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            58999999999999999999999999999999999999999999999999999876

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.34  E-value=4.6e-12  Score=95.77  Aligned_cols=112  Identities=15%  Similarity=0.141  Sum_probs=76.9

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCH--
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKK--  190 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~--  190 (245)
                      ...+.+.||||+..|-......+..+|++|+|+|+.++..-...+..+..+....  -.|+||+.||+|+........  
T Consensus        85 ~r~~~iiD~PGH~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~--i~~iIV~vNK~Dl~~~~~~~~~~  162 (205)
T d2qn6a3          85 LRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIG--VKNLIIVQNKVDVVSKEEALSQY  162 (205)
T ss_dssp             EEEEEEEECSCHHHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTT--CCCEEEEEECGGGSCHHHHHHHH
T ss_pred             eEEEEEeccchHHHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcC--CceeeeccccCCCccchHHHHHH
Confidence            3468999999999998887788899999999999988642222232222233222  248899999999964322111  


Q ss_pred             HHHHHHHHHc---CCcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        191 EEGEVFAREH---GLVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       191 ~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      .....+....   .++++.+||++|.||+++++.+..++
T Consensus       163 ~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         163 RQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             HHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            1112222211   36799999999999999999888764

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.32  E-value=2.4e-12  Score=96.42  Aligned_cols=125  Identities=18%  Similarity=0.092  Sum_probs=86.3

Q ss_pred             CcceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEE
Q psy13390         98 GGVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIG  177 (245)
Q Consensus        98 ig~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~  177 (245)
                      -|.++......+......+.++||||+..|.......+..+|++++|+|+.++..-|.. +.+..+....  ..|+|++.
T Consensus        50 rgiTi~~~~~~~~~~~~~~~~iDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~QT~-~~~~~a~~~~--~~~iIv~i  126 (196)
T d1d2ea3          50 RGITINAAHVEYSTAARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTR-EHLLLARQIG--VEHVVVYV  126 (196)
T ss_dssp             TTEEEECEEEEEECSSCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHH-HHHHHHHHTT--CCCEEEEE
T ss_pred             CCccCCcceEEEEeceeeEEeecCcchHHHHHHHHHHHhhcCeEEEEEEcCCCCchhHH-HHHHHHHHhc--CCcEEEEE
Confidence            35556566666666667899999999999988888889999999999999987554432 2222233322  35899999


Q ss_pred             eCCCCccCccc---CHHHHHHHHHHcC-----CcEEEeccCCC----------CCHHHHHHHHHHH
Q psy13390        178 NKSDLDARREV---KKEEGEVFAREHG-----LVFMETSAKLA----------TNVEEAFIDTAKE  225 (245)
Q Consensus       178 nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~~~Sa~~~----------~~i~~~~~~i~~~  225 (245)
                      ||+|+......   ...+.+.+....+     +|++.+||++|          .++.++++.+.+.
T Consensus       127 NK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         127 NKADAVQDSEMVELVELEIRELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             ECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             ecccccccHHHHHHHHHHHHHHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence            99998643221   1123334444333     56999999998          5888888776554

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.8e-12  Score=93.68  Aligned_cols=56  Identities=57%  Similarity=0.900  Sum_probs=53.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|+++||||+|+...+.+..+++..+++.++++++||||++|.||+++|..+++.+
T Consensus       110 ~~iilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         110 TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ceEEEEcccccchhhcccHHHHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHh
Confidence            58999999999999999999999999999999999999999999999999999876

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.30  E-value=3.6e-12  Score=93.75  Aligned_cols=60  Identities=28%  Similarity=0.438  Sum_probs=53.4

Q ss_pred             CeEEEEeecCCCccC-CCCCHHHHHHHHHHhC-CcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDAR-REVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~-~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|++|||||+|+.+. +.++.+++..+++.++ .+|++|||++|.||+++|..+++.++++.
T Consensus       113 ~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         113 FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNAINVDTAFEEIARSALQQN  174 (175)
T ss_dssp             CCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEecccchhhhhcchhHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHHhcc
Confidence            589999999999865 4588899999999986 68999999999999999999999987653

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=3.1e-12  Score=93.70  Aligned_cols=58  Identities=36%  Similarity=0.546  Sum_probs=54.7

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|+++||||+|+.+.+.++.+++..+++..++++++|||++|.||+++|+.+++.+.+
T Consensus       111 ~~iivv~nK~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~f~~l~~~i~e  168 (169)
T d3raba_         111 AQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDVICE  168 (169)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHHHHHHHHHHHT
T ss_pred             ceEEEEEeecccccccccchhhhHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            4899999999999999999999999999999999999999999999999999998864

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.9e-12  Score=92.85  Aligned_cols=56  Identities=39%  Similarity=0.617  Sum_probs=51.8

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++||||+|+. .+.++.+++..+++.++++|+||||++|.||+++|..+++.+.
T Consensus       109 ~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~i~~~i~  164 (166)
T d1ctqa_         109 VPMVLVGNKCDLA-ARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             CCEEEEEECTTCS-CCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CeEEEEecccccc-cccccHHHHHHHHHHhCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            5899999999986 4678899999999999999999999999999999999999874

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=3.7e-12  Score=93.06  Aligned_cols=57  Identities=42%  Similarity=0.662  Sum_probs=52.7

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHh-CCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREH-GLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|++|||||+|+...+.+..+++..+++++ +.+|+||||++|.||+++|..+++++.
T Consensus       109 ~p~ilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         109 VPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             CeEEEEEEecCcccccccchhHHHHHHHHhCCCEEEEEcCCCCcCHHHHHHHHHHHhc
Confidence            589999999999999999999999999885 689999999999999999999998873

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=5.6e-12  Score=92.71  Aligned_cols=62  Identities=53%  Similarity=0.743  Sum_probs=57.9

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhcc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE   62 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~   62 (245)
                      +|+++||||+|+...+++..+++..+++.++++|+|+||++|.||+++|..+++.+.++.+.
T Consensus       111 ~piivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gi~e~f~~l~~~i~~~~~~  172 (174)
T d2bmea1         111 IVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEAFVQCARKILNKIES  172 (174)
T ss_dssp             CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHHS
T ss_pred             eEEEEEEecccccchhchhhhHHHHHHHhCCCEEEEeeCCCCcCHHHHHHHHHHHHHHHHhc
Confidence            59999999999998899999999999999999999999999999999999999999877643

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=5.5e-12  Score=92.78  Aligned_cols=56  Identities=38%  Similarity=0.654  Sum_probs=51.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhC-CcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|++|||||+|+.+ +.++.+++..+++..+ ++|+||||++|.||+++|+.+++.++
T Consensus       116 ~piilVgnK~Dl~~-~~v~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~il  172 (174)
T d1wmsa_         116 FPFVILGNKIDISE-RQVSTEEAQAWCRDNGDYPYFETSAKDATNVAAAFEEAVRRVL  172 (174)
T ss_dssp             SCEEEEEECTTCSS-CSSCHHHHHHHHHHTTCCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ceEEEeccccchhh-ccCcHHHHHHHHHHcCCCeEEEEcCCCCcCHHHHHHHHHHHHh
Confidence            58999999999964 7899999999999865 79999999999999999999999885

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.26  E-value=2e-11  Score=90.53  Aligned_cols=116  Identities=22%  Similarity=0.132  Sum_probs=74.9

Q ss_pred             EEECCeEEEEEEEcCCChhhhh------------hhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE
Q psy13390        107 ITIDGKQIKLQIWDTAGQEAFR------------SITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIM  174 (245)
Q Consensus       107 ~~~~~~~~~~~l~Dt~G~~~~~------------~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii  174 (245)
                      +.+++.  .+.++|++|.....            .....+++.+|++++|+|+..+..-+. ..++..+..   .+.|+|
T Consensus        51 ~~~~~~--~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~dvii~v~d~~~~~~~~~-~~~~~~~~~---~~~~~i  124 (186)
T d1mkya2          51 VFIDGR--KYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADVVVIVLDATQGITRQD-QRMAGLMER---RGRASV  124 (186)
T ss_dssp             EEETTE--EEEESSCSCC-----------CCSCCHHHHHHHHHCSEEEEEEETTTCCCHHH-HHHHHHHHH---TTCEEE
T ss_pred             eccCCc--eeeeeccCCccccccccccccccchhHHHHHHHhcCCEEEEeecccccchhhH-HHHHHHHHH---cCCcee
Confidence            344544  47888999864322            233446788999999999986544322 333333333   358999


Q ss_pred             EEEeCCCCccCcccCHHHHHHHHHH-----cCCcEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13390        175 LIGNKSDLDARREVKKEEGEVFARE-----HGLVFMETSAKLATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       175 vv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~  228 (245)
                      +|+||+|+.........+.......     ...+++++||++|.|+++++++|.+.+..
T Consensus       125 ~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~~~  183 (186)
T d1mkya2         125 VVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAYAS  183 (186)
T ss_dssp             EEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             eeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            9999999864443333333332222     24579999999999999999999766543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.4e-11  Score=89.37  Aligned_cols=61  Identities=51%  Similarity=0.710  Sum_probs=56.0

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ   61 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~   61 (245)
                      +|++|||||+|+.+.+....+.+..++..++.+++++||++|.||+++|..+++.+.+...
T Consensus       110 ~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~~i~e~f~~l~~~i~~~~~  170 (175)
T d2f9la1         110 IVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNILTEIYRIVS  170 (175)
T ss_dssp             CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEEeeecccccccchHHHHHHhhcccCceEEEEecCCCcCHHHHHHHHHHHHHHHhh
Confidence            5999999999999888888888899999999999999999999999999999999876544

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.19  E-value=4.6e-12  Score=94.09  Aligned_cols=109  Identities=14%  Similarity=0.128  Sum_probs=69.6

Q ss_pred             EEEEEcCCChhhhhh----hh---HhhccCCcEEEEEEeCCChhhHHHHHH--HHHHHHhh---cCCCCeEEEEEeCCCC
Q psy13390        115 KLQIWDTAGQEAFRS----IT---RSYYRGAAGALLVYDITRRETFNHLTT--WLEDARQH---SNSNMVIMLIGNKSDL  182 (245)
Q Consensus       115 ~~~l~Dt~G~~~~~~----~~---~~~~~~~d~vi~v~d~~~~~s~~~~~~--~~~~~~~~---~~~~~piivv~nK~Dl  182 (245)
                      .+.+|||||..+...    +.   -..+..++.++++++............  +.......   ...++|+++|+||+|+
T Consensus        50 ~~~~~DtpG~~~~~~~~~~~~~~~l~~~~~~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl  129 (185)
T d1lnza2          50 SFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDM  129 (185)
T ss_dssp             EEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTS
T ss_pred             EEEEecCCCcccCchHHHHHHHHHHHHHHHhhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccch
Confidence            588999999643221    11   234567899999998765433222211  11111111   1146899999999998


Q ss_pred             ccCcccCHHHHHHHHHH--cCCcEEEeccCCCCCHHHHHHHHHHHHH
Q psy13390        183 DARREVKKEEGEVFARE--HGLVFMETSAKLATNVEEAFIDTAKEIY  227 (245)
Q Consensus       183 ~~~~~~~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~i~  227 (245)
                      ....    +....+...  .+.+++.+||++|.|++++++++.+.+.
T Consensus       130 ~~~~----~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~  172 (185)
T d1lnza2         130 PEAA----ENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQLE  172 (185)
T ss_dssp             TTHH----HHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHHT
T ss_pred             HhHH----HHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhhh
Confidence            6432    222333333  3678999999999999999999988763

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=3.3e-11  Score=88.13  Aligned_cols=57  Identities=53%  Similarity=0.715  Sum_probs=54.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      .|++|||||+|+..++.++.+++..+++.++++|+|+||++|.||+++|..+++++.
T Consensus       113 ~~iilv~~k~d~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         113 VALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             CEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ceEEEEEeeechhhcccccHHHHHHHHHHcCCEEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            489999999999999999999999999999999999999999999999999999874

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.13  E-value=5.1e-11  Score=88.25  Aligned_cols=60  Identities=32%  Similarity=0.515  Sum_probs=51.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHH-hCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ   61 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~   61 (245)
                      +|++|||||+||.+ +.+..+++..++.. ++++|++|||++|.||+++|..+++.+.++..
T Consensus       112 ip~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~e~Sak~~~gI~e~f~~l~~~i~~~~~  172 (184)
T d1vg8a_         112 FPFVVLGNKIDLEN-RQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIARNALKQET  172 (184)
T ss_dssp             SCEEEEEECTTSSC-CCSCHHHHHHHHHHTTSCCEEECBTTTTBSHHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEEEeecccc-cchhHHHHHHHHHHhcCCeEEEEcCCCCcCHHHHHHHHHHHHHhccc
Confidence            58999999999976 56788888877765 57899999999999999999999999877643

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.12  E-value=1.3e-10  Score=86.76  Aligned_cols=60  Identities=40%  Similarity=0.615  Sum_probs=56.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|++|||||+|+.+.+.+..+++..+++..+..|+++||++|.||+++|..+++.+.+..
T Consensus       112 ~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~gi~e~f~~l~~~i~~~~  171 (194)
T d2bcgy1         112 VLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMARQIKESM  171 (194)
T ss_dssp             CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHHHHHHHHHHHHHC
T ss_pred             ceEEEEEeccccccccchhHHHHhhhhhccCcceEEEecCcCccHHHHHHHHHHHHHHHh
Confidence            589999999999999999999999999999999999999999999999999999987654

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.11  E-value=7e-11  Score=88.98  Aligned_cols=109  Identities=18%  Similarity=0.155  Sum_probs=71.9

Q ss_pred             cceeeEEEEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCe-EEEEE
Q psy13390         99 GVEFGARMITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMV-IMLIG  177 (245)
Q Consensus        99 g~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p-iivv~  177 (245)
                      |.++......+.+...+++|+||||+..|.......++.+|++|+|+|+.++...+....|. .+..   .++| ++++.
T Consensus        52 giTi~~~~~~~~~~~~~i~iiDtPGh~df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~-~~~~---~gi~~iiv~i  127 (204)
T d2c78a3          52 GITINTAHVEYETAKRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHIL-LARQ---VGVPYIVVFM  127 (204)
T ss_dssp             TCCCSCEEEEEECSSCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHH-HHHH---TTCCCEEEEE
T ss_pred             CeEEEeeEEEEEeCCeEEEEEeCCCchhhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHH-HHHH---cCCCeEEEEE
Confidence            33343444455555667999999999999888888999999999999999887766544432 2222   2465 77889


Q ss_pred             eCCCCccCccc---CHHHHHHHHHHcC-----CcEEEeccCC
Q psy13390        178 NKSDLDARREV---KKEEGEVFAREHG-----LVFMETSAKL  211 (245)
Q Consensus       178 nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~~~Sa~~  211 (245)
                      ||+|+....+.   ..++.+.+....+     ++++..||..
T Consensus       128 NK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~i~~i~~sa~~  169 (204)
T d2c78a3         128 NKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRGSALL  169 (204)
T ss_dssp             ECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEECCHHH
T ss_pred             EecccCCCHHHHHHHHHHHHHHHHhcCCCcccceeeeeechh
Confidence            99998543211   1123333333333     4578888764

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=9.9e-11  Score=85.80  Aligned_cols=60  Identities=47%  Similarity=0.709  Sum_probs=51.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHHh
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEKI   60 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~   60 (245)
                      +|+++||||+|+...+....+++..+++..+++|++|||++|.||+++|..+++.+..++
T Consensus       112 ~~iilv~~k~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~f~~l~~~i~~k~  171 (173)
T d2fu5c1         112 VEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLARDIKAKM  171 (173)
T ss_dssp             CEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHHHHHHHHHHHHHH
T ss_pred             ceEEEEEecccchhhcccHHHHHHHHHHhcCCEEEEEeCCCCCCHHHHHHHHHHHHHHhc
Confidence            589999999999988889999999999999999999999999999999999999997764

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2e-11  Score=89.34  Aligned_cols=56  Identities=32%  Similarity=0.487  Sum_probs=48.8

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|++|||||+||...+..  +++..++...+++|+|+||++|.||+++|..|++.++.
T Consensus       108 ~piilvgnK~Dl~~~~~~--~~~~~~~~~~~~~~~e~Sak~~~~v~e~f~~l~~~l~~  163 (170)
T d1i2ma_         108 IPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIG  163 (170)
T ss_dssp             CCEEEEEECCCCSCSCCT--TTSHHHHSSCSSEEEEEBTTTTBTTTHHHHHHHHHHHT
T ss_pred             Cceeeecchhhhhhhhhh--hHHHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHcc
Confidence            599999999999876543  34667888899999999999999999999999998864

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.09  E-value=5.7e-11  Score=86.82  Aligned_cols=56  Identities=46%  Similarity=0.767  Sum_probs=51.1

Q ss_pred             CeEEEEeecCCCcc---CCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDA---RREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~---~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      .|+++||||+|+.+   .+.++.+++.++++.++++|+|+||++|.||+++|..+++++
T Consensus       109 ~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~gV~e~F~~i~~~i  167 (170)
T d1ek0a_         109 IIIALVGNKIDMLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             CEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             cceeeeecccccccccchhhhhHHHHHHHHHHcCCEEEEecCCCCcCHHHHHHHHHHHh
Confidence            47899999999864   478999999999999999999999999999999999998765

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.09  E-value=5.6e-10  Score=84.90  Aligned_cols=104  Identities=22%  Similarity=0.135  Sum_probs=70.8

Q ss_pred             ECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCC-eEEEEEeCCCCccCcc
Q psy13390        109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNM-VIMLIGNKSDLDARRE  187 (245)
Q Consensus       109 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~-piivv~nK~Dl~~~~~  187 (245)
                      +......+.|+||||+..|-.........+|++++|+|+.++..-+.... +..+..   .++ .+|++.||+|+.+..+
T Consensus        84 ~~~~~~~~~iiD~PGH~dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~-~~~~~~---~gv~~iiv~vNK~D~~~~~~  159 (222)
T d1zunb3          84 FSTAKRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRH-SYIASL---LGIKHIVVAINKMDLNGFDE  159 (222)
T ss_dssp             EECSSEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHH-HHHHHH---TTCCEEEEEEECTTTTTSCH
T ss_pred             EeccceEEEEEeccchhhhhhhhccccccCceEEEEeccccCcccchHHH-HHHHHH---cCCCEEEEEEEccccccccc
Confidence            33344569999999999998888788999999999999998755443322 222222   234 4888999999864321


Q ss_pred             c----CHHHHHHHHHHcCC-----cEEEeccCCCCCHH
Q psy13390        188 V----KKEEGEVFAREHGL-----VFMETSAKLATNVE  216 (245)
Q Consensus       188 ~----~~~~~~~~~~~~~~-----~~~~~Sa~~~~~i~  216 (245)
                      -    ..++...+....++     +++.+||++|.|+.
T Consensus       160 ~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         160 RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             eehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            1    11233444444443     57899999999984

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=7.1e-11  Score=87.40  Aligned_cols=57  Identities=25%  Similarity=0.435  Sum_probs=49.9

Q ss_pred             CeEEEEeecCCCccC------------CCCCHHHHHHHHHHhC-CcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDAR------------REVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~------------~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|++|||||+|+.+.            +.+...++..+|+.++ +.|+||||++|.||+++|..+++.++
T Consensus       110 ~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~E~SAk~~~~V~e~F~~l~~~il  179 (183)
T d1mh1a_         110 TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTVFDEAIRAVL  179 (183)
T ss_dssp             SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             CcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHHHcCCceEEEcCCCCCcCHHHHHHHHHHHHc
Confidence            589999999998543            4467788999999987 68999999999999999999999874

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.2e-10  Score=86.71  Aligned_cols=58  Identities=22%  Similarity=0.382  Sum_probs=50.9

Q ss_pred             CeEEEEeecCCCcc------------CCCCCHHHHHHHHHHhC-CcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDA------------RREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~------------~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|+++||||+||.+            .+.|+.+++..||...+ ..|+||||++|.||+++|+.+++.+.+
T Consensus       108 ~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~V~e~f~~l~~~~~~  178 (191)
T d2ngra_         108 TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNVFDEAILAALE  178 (191)
T ss_dssp             CCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSCEEECCTTTCTTHHHHHHHHHHHHTS
T ss_pred             CceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHcCCCeEEEEeCCCCcCHHHHHHHHHHHHhc
Confidence            58999999999863            35699999999999964 789999999999999999999987754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.05  E-value=9.8e-10  Score=81.86  Aligned_cols=89  Identities=12%  Similarity=0.125  Sum_probs=61.0

Q ss_pred             hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHH----cCCcEEEec
Q psy13390        133 SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFARE----HGLVFMETS  208 (245)
Q Consensus       133 ~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~S  208 (245)
                      ..+..++++++++|++++..-++ ..++..+..   .++|+++|+||+|+.+..... +....+...    .+.+++.+|
T Consensus       101 ~~~~~~~~vi~viD~~~~~~~~~-~~~~~~l~~---~~~piivv~NK~D~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~S  175 (195)
T d1svia_         101 TTREELKAVVQIVDLRHAPSNDD-VQMYEFLKY---YGIPVIVIATKADKIPKGKWD-KHAKVVRQTLNIDPEDELILFS  175 (195)
T ss_dssp             HHCTTEEEEEEEEETTSCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSCGGGHH-HHHHHHHHHHTCCTTSEEEECC
T ss_pred             ccccchhhhhhhhhccccccccc-ccccccccc---ccCcceechhhccccCHHHHH-HHHHHHHHHhcccCCCCEEEEe
Confidence            45567899999999987644322 334444443   358999999999986443221 222222222    345799999


Q ss_pred             cCCCCCHHHHHHHHHHHH
Q psy13390        209 AKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       209 a~~~~~i~~~~~~i~~~i  226 (245)
                      |++|.|++++++++.+.+
T Consensus       176 A~~~~gi~el~~~i~~~l  193 (195)
T d1svia_         176 SETKKGKDEAWGAIKKMI  193 (195)
T ss_dssp             TTTCTTHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHh
Confidence            999999999999998775

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.02  E-value=1.5e-10  Score=84.01  Aligned_cols=42  Identities=36%  Similarity=0.511  Sum_probs=39.7

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCC
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLA   42 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~   42 (245)
                      +|++|||||+||.+.++++.++++.+++.++++|+|||||+|
T Consensus       110 ~pi~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAkt~  151 (165)
T d1z06a1         110 IPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNP  151 (165)
T ss_dssp             CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSG
T ss_pred             CeEEEEeccccchhccchhHHHHHHHHHHCCCEEEEEecccC
Confidence            589999999999999999999999999999999999999974

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=5.2e-10  Score=82.09  Aligned_cols=61  Identities=18%  Similarity=0.373  Sum_probs=52.2

Q ss_pred             CeEEEEeecCCCc--cCCCCCHHHHHHHHHH-hCCcEEEecccCCCcHHHHHHHHHHHHHHHhc
Q psy13390          1 MVIMLIGNKSDLD--ARREVKKEEGEVFARE-HGLVFMETSAKLATNVEEAFIDTAKEIYEKIQ   61 (245)
Q Consensus         1 ~~~~lvgnK~Dl~--~~~~v~~~~~~~~~~~-~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~   61 (245)
                      +|++|||||.|+.  ..+.++.+++..++.. +++.|+||||++|.||+++|..+++++.....
T Consensus       107 ~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~~~  170 (175)
T d2bmja1         107 LALALVGTQDRISASSPRVVGDARARALCADMKRCSYYETCATYGLNVDRVFQEVAQKVVTLRK  170 (175)
T ss_dssp             CEEEEEEECTTCCSSSCCCSCHHHHHHHHHTSTTEEEEEEBTTTTBTHHHHHHHHHHHHHHHHH
T ss_pred             ccEEEEeeecCcchhhhcchhHHHHHHHHHHhCCCeEEEeCCCCCcCHHHHHHHHHHHHHHhhh
Confidence            5899999988875  4577899999999765 56799999999999999999999999976643

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.97  E-value=3e-09  Score=82.76  Aligned_cols=69  Identities=17%  Similarity=0.189  Sum_probs=55.2

Q ss_pred             CeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390        111 GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD  183 (245)
Q Consensus       111 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  183 (245)
                      ++..+++|+||||+..|.......++-+|++++|+|+.++..-+...-|. .+.+   .++|.+++.||+|..
T Consensus        64 ~~~~~~n~iDtPGh~dF~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~-~~~~---~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          64 FRGHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWT-VAER---LGLPRMVVVTKLDKG  132 (267)
T ss_dssp             ETTEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHH-HHHH---TTCCEEEEEECGGGC
T ss_pred             ccccceeEEccCchhhhhhhhhhhhcccCceEEEeeccCCccchhHHHHH-hhhh---ccccccccccccccc
Confidence            34456999999999999988888999999999999999887666655543 2333   358999999999963

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.97  E-value=2.2e-09  Score=83.77  Aligned_cols=74  Identities=23%  Similarity=0.283  Sum_probs=58.1

Q ss_pred             EEEECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390        106 MITIDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD  183 (245)
Q Consensus       106 ~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  183 (245)
                      ...+.++..+++|+||||+..|.......++-+|++|+|+|+.++..-+...-|-. ...   .++|.+++.||+|..
T Consensus        63 ~~~~~~~~~~~n~iDtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv~~~T~~~w~~-a~~---~~lP~i~fINKmDr~  136 (276)
T d2bv3a2          63 VTTCFWKDHRINIIDAPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQ-AEK---YKVPRIAFANKMDKT  136 (276)
T ss_dssp             EEEEEETTEEEEEECCCSSSSCSTTHHHHHHHCCEEEEEEETTTSSCHHHHHHHHH-HHT---TTCCEEEEEECTTST
T ss_pred             eeeeccCCeEEEEecCCchhhhHHHHHHHHHhhhheEEeccccCCcchhHHHHHHH-HHH---cCCCEEEEEeccccc
Confidence            33344455679999999999998888889999999999999998866665554432 332   469999999999975

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=1.9e-09  Score=79.06  Aligned_cols=58  Identities=43%  Similarity=0.682  Sum_probs=53.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      .|+++++||.|.. .+.+..+++..+++.+++.++++||++|.||+++|+.+++.+.+.
T Consensus       114 ~~i~~~~nk~d~~-~~~v~~~~~~~~~~~~~~~~~e~Sa~tg~gv~e~f~~l~~~l~~~  171 (177)
T d1x3sa1         114 IVNMLVGNKIDKE-NREVDRNEGLKFARKHSMLFIEASAKTCDGVQCAFEELVEKIIQT  171 (177)
T ss_dssp             CEEEEEEECTTSS-SCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             eeeEEEeeccccc-cccccHHHHHHHHHHCCCEEEEEeCCCCCCHHHHHHHHHHHHccC
Confidence            4789999999965 578999999999999999999999999999999999999998754

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=5.4e-09  Score=80.23  Aligned_cols=103  Identities=18%  Similarity=0.105  Sum_probs=68.9

Q ss_pred             CeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhH-------HHHHHHHHHHHhhcCCCCe-EEEEEeCCCC
Q psy13390        111 GKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETF-------NHLTTWLEDARQHSNSNMV-IMLIGNKSDL  182 (245)
Q Consensus       111 ~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~-------~~~~~~~~~~~~~~~~~~p-iivv~nK~Dl  182 (245)
                      ....+++|.||||+..|-.........+|++|+|+|+.++.--       |....| .....   -++| +|++.||+|+
T Consensus        81 ~~~~~i~iiDtPGH~df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~-~~~~~---~gv~~iiv~iNKmD~  156 (239)
T d1f60a3          81 TPKYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHA-LLAFT---LGVRQLIVAVNKMDS  156 (239)
T ss_dssp             CSSEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHH-HHHHH---TTCCEEEEEEECGGG
T ss_pred             cCCEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHH-HHHHH---cCCCeEEEEEECCCC
Confidence            3446799999999999988888899999999999999865321       222212 11222   2354 8889999998


Q ss_pred             ccCcccC----HHHHHHHHHHcC-----CcEEEeccCCCCCHHH
Q psy13390        183 DARREVK----KEEGEVFAREHG-----LVFMETSAKLATNVEE  217 (245)
Q Consensus       183 ~~~~~~~----~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  217 (245)
                      .+...-.    .++...+....+     ++++.+||.+|.|+-+
T Consensus       157 ~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         157 VKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             GTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             CCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            6432111    122333444443     4589999999998744

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=98.80  E-value=7.2e-09  Score=78.89  Aligned_cols=106  Identities=20%  Similarity=0.171  Sum_probs=69.2

Q ss_pred             CCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHH------HHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390        110 DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFN------HLTTWLEDARQHSNSNMVIMLIGNKSDLD  183 (245)
Q Consensus       110 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~piivv~nK~Dl~  183 (245)
                      +.....++|+||||+..|........+-+|++|+|+|+.++..-+      ...+-+......  .-.++|++.||+|+.
T Consensus        77 ~~~~~~i~iiDtPGH~df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~--~~~~iIv~iNK~D~~  154 (224)
T d1jnya3          77 ETKKYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTM--GLDQLIVAVNKMDLT  154 (224)
T ss_dssp             ECSSCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHT--TCTTCEEEEECGGGS
T ss_pred             ecCCceeEEeeCCCcHHHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHh--CCCceEEEEEcccCC
Confidence            334467999999999999999988999999999999999864221      111111111211  234688899999985


Q ss_pred             cCccc------CHHHHHHHHHHcC-----CcEEEeccCCCCCHHH
Q psy13390        184 ARREV------KKEEGEVFAREHG-----LVFMETSAKLATNVEE  217 (245)
Q Consensus       184 ~~~~~------~~~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~  217 (245)
                      .....      ...+...+....+     ++++.+||.+|.|+.+
T Consensus       155 ~~~~~~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         155 EPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             SSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             CccccHHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            32110      1122233333333     4578999999999853

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.79  E-value=8.9e-09  Score=74.45  Aligned_cols=58  Identities=47%  Similarity=0.701  Sum_probs=52.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      .|+++++||.|+. .+.+..+++..+++.+++++++|||++|.||+++|..|++.+.++
T Consensus       108 ~~~i~~~~k~d~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         108 AQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             CEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             ceeeeecchhhhh-hhhhhHHHHHHHHHhcCCeEEEECCCCCCCHHHHHHHHHHHHHhc
Confidence            4788999999975 466889999999999999999999999999999999999988654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.76  E-value=1.4e-08  Score=78.18  Aligned_cols=108  Identities=19%  Similarity=0.198  Sum_probs=60.0

Q ss_pred             ECCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHH------HHHHHHHHHHhhcCCCC-eEEEEEeCCC
Q psy13390        109 IDGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFN------HLTTWLEDARQHSNSNM-VIMLIGNKSD  181 (245)
Q Consensus       109 ~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~------~~~~~~~~~~~~~~~~~-piivv~nK~D  181 (245)
                      +......+.+.||||+..|..........+|++++|+|+.++.--+      .....+..+..   .++ +++++.||+|
T Consensus        97 ~~~~~~~i~~iDtPGH~df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~---~~i~~iiv~iNKmD  173 (245)
T d1r5ba3          97 FETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLART---QGINHLVVVINKMD  173 (245)
T ss_dssp             EECSSEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHH---TTCSSEEEEEECTT
T ss_pred             cccccceeeeecccccccchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHH---cCCCeEEEEEEcCC
Confidence            3344457999999999999888888889999999999998753111      11222222222   234 4888999999


Q ss_pred             CccCcccCHH-------HHHHHHHHc-------CCcEEEeccCCCCCHHHHHH
Q psy13390        182 LDARREVKKE-------EGEVFAREH-------GLVFMETSAKLATNVEEAFI  220 (245)
Q Consensus       182 l~~~~~~~~~-------~~~~~~~~~-------~~~~~~~Sa~~~~~i~~~~~  220 (245)
                      +.... ..++       +...+....       .++++.+||++|.||.++++
T Consensus       174 ~~~~~-~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         174 EPSVQ-WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             STTCS-SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             CCccc-hhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            86322 1221       112221221       24689999999999977643

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.75  E-value=4.2e-08  Score=71.49  Aligned_cols=107  Identities=19%  Similarity=0.093  Sum_probs=68.1

Q ss_pred             EEEEEcCCChhhhhh---------hhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccC
Q psy13390        115 KLQIWDTAGQEAFRS---------ITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDAR  185 (245)
Q Consensus       115 ~~~l~Dt~G~~~~~~---------~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  185 (245)
                      .+.+||++|......         ........+++++++.|..+....  ...+...+..   ...|+++|.||+|....
T Consensus        54 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~--~~~~~~~l~~---~~~~~i~v~~k~d~~~~  128 (179)
T d1egaa1          54 QAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPD--DEMVLNKLRE---GKAPVILAVNKVDNVQE  128 (179)
T ss_dssp             EEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEEEEEEEEETTCCCHH--HHHHHHHHHS---SSSCEEEEEESTTTCCC
T ss_pred             eeEeecCCCceecchhhhhhhhhhccccchhhcceeEEEEecCccchh--HHHHHHHhhh---ccCceeeeeeeeeccch
Confidence            366788887532211         112234577888899998754322  2222222332   45789999999998654


Q ss_pred             cccCHHHHHHHHHHcC-CcEEEeccCCCCCHHHHHHHHHHHH
Q psy13390        186 REVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEI  226 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~~~~i~~~i  226 (245)
                      +.........+...++ .+++++||++|.|++++++.+.+.+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         129 KADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             HHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             hhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHhC
Confidence            4322333444444454 5799999999999999999987764

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.75  E-value=7.1e-10  Score=81.71  Aligned_cols=57  Identities=16%  Similarity=0.157  Sum_probs=42.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHH-----HHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEV-----FAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~-----~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|+++||||+|+.+.  ++.++...     .+...+..+++|||++|+||+++|+.|++.+.++
T Consensus       119 ~piliv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~e~SA~~g~gv~e~~~~l~~~i~~~  180 (182)
T d1moza_         119 AALLVFANKQDQPGA--LSASEVSKELNLVELKDRSWSIVASSAIKGEGITEGLDWLIDVIKEE  180 (182)
T ss_dssp             CEEEEEEECTTSTTC--CCHHHHHHHTTTTTCCSSCEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEeeccccc--cCHHHHHHHHHHHHHhhCCCEEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence            589999999998643  33333322     2223355799999999999999999999988654

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.66  E-value=6.7e-09  Score=74.99  Aligned_cols=56  Identities=16%  Similarity=0.104  Sum_probs=41.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHH-H----HHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVF-A----REHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~-~----~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|+++||||+|+.+.+.  .++.... .    ....+.+++|||++|.||+++|+.|++.+..
T Consensus       104 ~p~iiv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         104 ATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             CEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             CceEEEEeccccccccC--HHHHHHHHHhhhhhcCCCEEEEEECCCCCCHHHHHHHHHHHHHc
Confidence            58999999999975443  3333222 1    1123468999999999999999999988753

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=2.9e-08  Score=74.23  Aligned_cols=78  Identities=18%  Similarity=0.208  Sum_probs=55.2

Q ss_pred             EECCeEEEEEEEcCCChhhhhhhhHh----hccCCcEEEEEEeCCC-hhhHHHHHHHHHHH----HhhcCCCCeEEEEEe
Q psy13390        108 TIDGKQIKLQIWDTAGQEAFRSITRS----YYRGAAGALLVYDITR-RETFNHLTTWLEDA----RQHSNSNMVIMLIGN  178 (245)
Q Consensus       108 ~~~~~~~~~~l~Dt~G~~~~~~~~~~----~~~~~d~vi~v~d~~~-~~s~~~~~~~~~~~----~~~~~~~~piivv~n  178 (245)
                      .+......+.+|||+|++.++..+..    ....++.+++++|+.+ ..++.....|+..+    ......++|+++|+|
T Consensus        40 ~~~~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~N  119 (209)
T d1nrjb_          40 AADYDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACN  119 (209)
T ss_dssp             ETTGGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEE
T ss_pred             EEEeCCeEEEEEecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEE
Confidence            34445556899999999887665544    4556689999999774 45566666555433    344446899999999


Q ss_pred             CCCCccC
Q psy13390        179 KSDLDAR  185 (245)
Q Consensus       179 K~Dl~~~  185 (245)
                      |+|+...
T Consensus       120 K~D~~~~  126 (209)
T d1nrjb_         120 KSELFTA  126 (209)
T ss_dssp             CTTSTTC
T ss_pred             eeccccc
Confidence            9998653

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.58  E-value=5.9e-08  Score=71.01  Aligned_cols=44  Identities=32%  Similarity=0.518  Sum_probs=38.8

Q ss_pred             CeEEEEeecCCCcc------------CCCCCHHHHHHHHHHhCC-cEEEecccCCCc
Q psy13390          1 MVIMLIGNKSDLDA------------RREVKKEEGEVFAREHGL-VFMETSAKLATN   44 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~-~~~~~Sa~~~~~   44 (245)
                      +|++|||||+|+..            .+.|+.+++..+|+.++. .|+||||++|.|
T Consensus       107 ~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~y~E~SAk~~~n  163 (179)
T d1m7ba_         107 TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATYIECSALQSEN  163 (179)
T ss_dssp             CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEEEECBTTTBHH
T ss_pred             ceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHHhCCCeEEEEeCCCCCc
Confidence            58999999999863            467999999999999875 799999999985

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.53  E-value=1.2e-08  Score=73.50  Aligned_cols=58  Identities=17%  Similarity=0.248  Sum_probs=42.6

Q ss_pred             CeEEEEeecCCCccCCC---CCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARRE---VKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~---v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      .|+++|+||.|+.+...   +..+.+..++.....+++++||++|.||+++|+.|++.+.+
T Consensus       107 ~~i~iv~nk~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SA~~g~gv~e~~~~l~~~l~~  167 (169)
T d1upta_         107 AILVVFANKQDMEQAMTSSEMANSLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVETLKS  167 (169)
T ss_dssp             CEEEEEEECTTSTTCCCHHHHHHHHTGGGCTTSCEEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             ceEEEEEeeccccccccHHHHHHHHHHHHHhcCCCEEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            47899999999975432   11222223444456789999999999999999999997743

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=98.51  E-value=4.7e-09  Score=75.08  Aligned_cols=56  Identities=18%  Similarity=0.207  Sum_probs=41.0

Q ss_pred             CeEEEEeecCCCccCCC---CCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARRE---VKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~---v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +|+++|+||.|+.+...   +..+.+..+++..+..++++||++|.||+++|+.|++++
T Consensus       102 ~~i~~v~~k~d~~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~gi~e~~~~l~~~l  160 (160)
T d1r8sa_         102 AVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSNQL  160 (160)
T ss_dssp             CEEEEEEECTTSTTCCCHHHHHHHTTGGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             ceEEEEeecccccccccHHHHHHHHHHHHHhhCCCEEEEeECCCCCCHHHHHHHHHhcC
Confidence            58999999999864321   222222334445567899999999999999999998763

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=98.51  E-value=4.6e-09  Score=75.89  Aligned_cols=53  Identities=17%  Similarity=0.223  Sum_probs=38.8

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHH-H----HHHHhCCcEEEecccCCCcHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGE-V----FAREHGLVFMETSAKLATNVEEAFIDTAKE   55 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~-~----~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~   55 (245)
                      +|++|||||.|+.+..  ...+.. .    ++...+..++++||++|.||+++|+.|++.
T Consensus       105 ~pi~lv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~e~Sa~~g~gv~e~~~~l~~~  162 (164)
T d1zd9a1         105 IPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEKDNIDITLQWLIQH  162 (164)
T ss_dssp             CCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             CcEEEEEeccccchhh--hHHHHHHHHHHHHHHhCCCEEEEEeCcCCcCHHHHHHHHHHc
Confidence            5899999999986432  333222 1    222335578999999999999999999874

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.48  E-value=1.7e-07  Score=75.12  Aligned_cols=70  Identities=24%  Similarity=0.284  Sum_probs=57.7

Q ss_pred             CCeEEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCc
Q psy13390        110 DGKQIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLD  183 (245)
Q Consensus       110 ~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~  183 (245)
                      +++.+.++|+||||+..|.......++-+|++++|+|+.++...+...-|.. ...   .++|++++.||+|..
T Consensus        92 ~~~~~~inliDtPGh~dF~~ev~~al~~~D~allVVda~eGv~~qT~~~~~~-a~~---~~~p~i~viNKiDr~  161 (341)
T d1n0ua2          92 DGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDTIEGVCVQTETVLRQ-ALG---ERIKPVVVINKVDRA  161 (341)
T ss_dssp             CSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEETTTBSCHHHHHHHHH-HHH---TTCEEEEEEECHHHH
T ss_pred             cccceEEEEEcCCCcHHHHHHHHHHHhhcCceEEEEecccCcchhHHHHHHH-HHH---cCCCeEEEEECcccc
Confidence            4567889999999999999888889999999999999999877776555433 222   358999999999963

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.40  E-value=1.6e-07  Score=68.48  Aligned_cols=55  Identities=15%  Similarity=0.003  Sum_probs=42.4

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      .|+++|+||+|+..++.  .++..+.....+.+++.+||++|.||+++++.+.+.+.
T Consensus       114 ~p~iiv~NK~D~~~~~~--~~~~~~~~~~~~~~~~~iSA~tg~gid~L~~~i~~~l~  168 (180)
T d1udxa2         114 RPSLVALNKVDLLEEEA--VKALADALAREGLAVLPVSALTGAGLPALKEALHALVR  168 (180)
T ss_dssp             SCEEEEEECCTTSCHHH--HHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhHHH--HHHHHHHHHhcCCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence            48999999999865432  23334444556788999999999999999998888774

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.39  E-value=4.3e-07  Score=68.21  Aligned_cols=85  Identities=18%  Similarity=0.138  Sum_probs=60.8

Q ss_pred             hhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHH--HcCCcEEEecc
Q psy13390        133 SYYRGAAGALLVYDITRRE-TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAR--EHGLVFMETSA  209 (245)
Q Consensus       133 ~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~--~~~~~~~~~Sa  209 (245)
                      -.+.+.|.+++|+++.+|. +...+.+++.....   .++|.+||.||+||.+...  .+....+..  ..+++++.+||
T Consensus         6 P~vANiD~vliV~s~~~P~~~~~~ldR~Lv~a~~---~~i~pvIvlnK~DL~~~~~--~~~~~~~~~~~~~~~~v~~vSa   80 (225)
T d1u0la2           6 PHVANVDQVILVVTVKMPETSTYIIDKFLVLAEK---NELETVMVINKMDLYDEDD--LRKVRELEEIYSGLYPIVKTSA   80 (225)
T ss_dssp             TTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHH---TTCEEEEEECCGGGCCHHH--HHHHHHHHHHHTTTSCEEECCT
T ss_pred             CCcccCCEEEEEEeCCCCCCCHHHHHHHHHHHHH---cCCCEEEEEeCcccCCHHH--HHHHHHhhcccccceeEEEecc
Confidence            3568999999999988753 56666777655544   3589999999999964321  122222222  23578999999


Q ss_pred             CCCCCHHHHHHHH
Q psy13390        210 KLATNVEEAFIDT  222 (245)
Q Consensus       210 ~~~~~i~~~~~~i  222 (245)
                      +++.|++++...+
T Consensus        81 ~~~~g~~~L~~~l   93 (225)
T d1u0la2          81 KTGMGIEELKEYL   93 (225)
T ss_dssp             TTCTTHHHHHHHH
T ss_pred             ccchhHhhHHHHh
Confidence            9999999987765

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.35  E-value=5.3e-07  Score=70.31  Aligned_cols=92  Identities=12%  Similarity=0.082  Sum_probs=64.7

Q ss_pred             hHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccC
Q psy13390        131 TRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK  210 (245)
Q Consensus       131 ~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  210 (245)
                      ....++.+|+|++|+|+.+|.+..+  ..+..+.    .++|+|+|.||+|+.+.. . .+.........+...+.+||+
T Consensus         9 i~~~i~~~DvIl~V~DaR~P~ss~~--~~l~~~~----~~Kp~IlVlNK~DLv~~~-~-~~~w~~~f~~~~~~~i~isa~   80 (273)
T d1puja_           9 VTEKLKLIDIVYELVDARIPMSSRN--PMIEDIL----KNKPRIMLLNKADKADAA-V-TQQWKEHFENQGIRSLSINSV   80 (273)
T ss_dssp             HHHHGGGCSEEEEEEETTSTTTTSC--HHHHHHC----SSSCEEEEEECGGGSCHH-H-HHHHHHHHHTTTCCEEECCTT
T ss_pred             HHHHHHhCCEEEEEEECCCCCCCCC--HHHHHHH----cCCCeEEEEECccCCchH-H-HHHHHHHHHhcCCccceeecc
Confidence            3457999999999999998866543  1222222    357999999999996432 1 122233334556789999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHH
Q psy13390        211 LATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       211 ~~~~i~~~~~~i~~~i~~~~  230 (245)
                      ++.++.++...+.+.+.+..
T Consensus        81 ~~~~~~~~~~~~~~~l~~~~  100 (273)
T d1puja_          81 NGQGLNQIVPASKEILQEKF  100 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHHHH
T ss_pred             cCCCccccchhhhhhhhhhh
Confidence            99999988888777665543

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=98.32  E-value=1.3e-07  Score=68.49  Aligned_cols=57  Identities=18%  Similarity=0.075  Sum_probs=40.7

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +|+++|+||+|+.++.  ..+....+.+.....++++||++|.||+++++.+++.+.++
T Consensus       110 ~pviiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~i~iSAk~g~gid~L~~~i~~~l~e~  166 (171)
T d1mkya1         110 VDTILVANKAENLREF--EREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEK  166 (171)
T ss_dssp             CCEEEEEESCCSHHHH--HHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             ccccccchhhhhhhhh--hhHHHHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHhCCCC
Confidence            4899999999986421  12222223222334678899999999999999999988654

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=98.23  E-value=2.2e-06  Score=62.19  Aligned_cols=88  Identities=15%  Similarity=0.037  Sum_probs=53.0

Q ss_pred             ccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccC--HHHHHHHHHHc--CCcEEEeccC
Q psy13390        135 YRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVK--KEEGEVFAREH--GLVFMETSAK  210 (245)
Q Consensus       135 ~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~~--~~~~~~~Sa~  210 (245)
                      ......++.+.+......... ..++..+..   ...++++++||+|+.......  .+...+.....  ..+++.+||+
T Consensus        96 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~~~~~~v~~k~D~~~~~~~~~~~~~~~~~l~~~~~~~~~i~vSA~  171 (188)
T d1puia_          96 RQSLQGLVVLMDIRHPLKDLD-QQMIEWAVD---SNIAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSL  171 (188)
T ss_dssp             CTTEEEEEEEEETTSCCCHHH-HHHHHHHHH---TTCCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTT
T ss_pred             hhheeEEEEeecccccchhHH-HHHHHHhhh---ccccccchhhhhhccCHHHHHHHHHHHHHHHHhhCCCCcEEEEeCC
Confidence            345556667777665443333 333333333   347899999999986432111  11112212122  2468999999


Q ss_pred             CCCCHHHHHHHHHHHH
Q psy13390        211 LATNVEEAFIDTAKEI  226 (245)
Q Consensus       211 ~~~~i~~~~~~i~~~i  226 (245)
                      +|.||+++++.|.+.+
T Consensus       172 ~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         172 KKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             TTBSHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHh
Confidence            9999999999887654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.13  E-value=5.2e-07  Score=65.61  Aligned_cols=53  Identities=23%  Similarity=0.107  Sum_probs=40.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhC-CcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      .|+++|+||+|+....   .+....+....+ ..++++||++|.||+++|+.+++.+
T Consensus       116 ~piilv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~iSA~~~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         116 VPILLVGNKLDAAKYP---EEAMKAYHELLPEAEPRMLSALDERQVAELKADLLALM  169 (178)
T ss_dssp             SCEEEEEECGGGCSSH---HHHHHHHHHTSTTSEEEECCTTCHHHHHHHHHHHHTTC
T ss_pred             hhhhhhhcccccccCH---HHHHHHHHhhcccCceEEEecCCCCCHHHHHHHHHHhC
Confidence            4899999999985432   233345555555 4688999999999999999998754

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.11  E-value=7e-07  Score=69.62  Aligned_cols=115  Identities=13%  Similarity=0.156  Sum_probs=60.9

Q ss_pred             eEEEEeecCCCccCCCCCHHHHHHHHHHh---CCcEEEecccCCCcHHHHHHHHHHHHHHHhccCccc-ccccc-----C
Q psy13390          2 VIMLIGNKSDLDARREVKKEEGEVFAREH---GLVFMETSAKLATNVEEAFIDTAKEIYEKIQEGVFD-ITNEA-----N   72 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~f~~l~~~~~~~~~~~~~~-~~~~~-----~   72 (245)
                      |+++|.||+||.+     .+....|...+   +...+.+||+++.++.++...+.+.+.+........ .....     .
T Consensus        44 p~IlVlNK~DLv~-----~~~~~~w~~~f~~~~~~~i~isa~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vv  118 (273)
T d1puja_          44 PRIMLLNKADKAD-----AAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALII  118 (273)
T ss_dssp             CEEEEEECGGGSC-----HHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEE
T ss_pred             CeEEEEECccCCc-----hHHHHHHHHHHHhcCCccceeecccCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEE
Confidence            7899999999854     33444555443   567888999999999888777766554432211110 01111     1


Q ss_pred             CcccCCCCCCCCCCCCCCCCCCCCCCcceeeEEEEEECCeEEEEEEEcCCCh
Q psy13390         73 GIKIGPQHSPNNPSLPSGSSGSSSGGGVEFGARMITIDGKQIKLQIWDTAGQ  124 (245)
Q Consensus        73 ~~~~~~~~~~~~~~l~~~~~~~~~tig~~~~~~~~~~~~~~~~~~l~Dt~G~  124 (245)
                      |.+..++++.-|...+.......++.|.|.....+..+.   .+.+.||||.
T Consensus       119 G~PNvGKSsliN~L~~~~~~~~~~~pG~Tr~~~~i~~~~---~~~l~DTPGi  167 (273)
T d1puja_         119 GIPNVGKSTLINRLAKKNIAKTGDRPGITTSQQWVKVGK---ELELLDTPGI  167 (273)
T ss_dssp             ESTTSSHHHHHHHHHTSCCC------------CCEEETT---TEEEEECCCC
T ss_pred             ecCccchhhhhhhhhccceEEECCcccccccceEEECCC---CeEEecCCCc
Confidence            222222222223335566778888888888766555443   3899999996

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.11  E-value=6.2e-07  Score=67.54  Aligned_cols=87  Identities=15%  Similarity=0.080  Sum_probs=62.1

Q ss_pred             hhccCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccC--HHHHHHHHHHcCCcEEEecc
Q psy13390        133 SYYRGAAGALLVYDITRR-ETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVK--KEEGEVFAREHGLVFMETSA  209 (245)
Q Consensus       133 ~~~~~~d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa  209 (245)
                      -.+.+.|.+++|+++.+| .++..+.+++.....   .+++.+||.||+||.......  .+.........+++++.+||
T Consensus         6 P~vANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~---~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~Sa   82 (231)
T d1t9ha2           6 PPICNVDQAVLVFSAVQPSFSTALLDRFLVLVEA---NDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSS   82 (231)
T ss_dssp             TTEECCCEEEEEEESTTTTCCHHHHHHHHHHHHT---TTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCH
T ss_pred             CCccccCEEEEEEECCCCCCCHHHHHHHHHHHHH---cCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccceeeec
Confidence            356899999999999876 366777777655443   468999999999996532111  11122334556899999999


Q ss_pred             CCCCCHHHHHHHH
Q psy13390        210 KLATNVEEAFIDT  222 (245)
Q Consensus       210 ~~~~~i~~~~~~i  222 (245)
                      +++.|++++..++
T Consensus        83 ~~~~gl~~L~~~l   95 (231)
T d1t9ha2          83 KDQDSLADIIPHF   95 (231)
T ss_dssp             HHHTTCTTTGGGG
T ss_pred             CChhHHHHHHHhh
Confidence            9999998877654

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.01  E-value=1.5e-06  Score=63.47  Aligned_cols=52  Identities=19%  Similarity=0.279  Sum_probs=40.2

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHh--CCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREH--GLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      .|+++|+||+|+.+.    .+..+.+.+.+  +.+++.+||++|.||++++..+++.+
T Consensus       118 kp~ivv~NK~Dl~~~----~~~~~~~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~L  171 (185)
T d1lnza2         118 RPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQL  171 (185)
T ss_dssp             SCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCSSTTHHHHHHHHHHH
T ss_pred             CcchhhccccchHhH----HHHHHHHHHHhccCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            378999999998643    23344455554  56789999999999999999998876

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=97.99  E-value=2.4e-05  Score=59.11  Aligned_cols=109  Identities=14%  Similarity=0.004  Sum_probs=64.2

Q ss_pred             EEEEEcCCChhhhhhhhH---hh--ccCCcEEEEEEeCCC---hhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCc
Q psy13390        115 KLQIWDTAGQEAFRSITR---SY--YRGAAGALLVYDITR---RETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARR  186 (245)
Q Consensus       115 ~~~l~Dt~G~~~~~~~~~---~~--~~~~d~vi~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~  186 (245)
                      .+.+.|++|+..+.....   ..  ....+++++++|+..   +..+.............  -..|.++|.||+|+....
T Consensus        96 ~~~~id~~g~~~~~~~~~~~~~~~~~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~--~~~~~ivvinK~D~~~~~  173 (244)
T d1yrba1          96 DYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLR--LGATTIPALNKVDLLSEE  173 (244)
T ss_dssp             SEEEEECCSSHHHHHHSHHHHHHHHTSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHH--HTSCEEEEECCGGGCCHH
T ss_pred             ceeeeccccchhHHHHHHHHHHHHhhccCceEEEEeccccccCchhHhhHHHHHHHHHHH--hCCCceeeeeccccccHH
Confidence            488999999976533221   11  235678999999853   33332222111111111  247999999999986432


Q ss_pred             ccCH-----------------------HHHHH---HHHH--cCCcEEEeccCCCCCHHHHHHHHHHH
Q psy13390        187 EVKK-----------------------EEGEV---FARE--HGLVFMETSAKLATNVEEAFIDTAKE  225 (245)
Q Consensus       187 ~~~~-----------------------~~~~~---~~~~--~~~~~~~~Sa~~~~~i~~~~~~i~~~  225 (245)
                      ....                       .....   ....  ..++++.+||++|+|+++++..+.+.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~vSa~~geGi~~L~~~l~e~  240 (244)
T d1yrba1         174 EKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEH  240 (244)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            1000                       00000   0111  24679999999999999999887664

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=97.92  E-value=5.4e-06  Score=60.13  Aligned_cols=58  Identities=21%  Similarity=0.185  Sum_probs=39.3

Q ss_pred             CeEEEEeecCCCccCCCCCH--HHHHHHHHH-h---CCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKK--EEGEVFARE-H---GLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~--~~~~~~~~~-~---~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      +|+++|.||+|+........  +....+.+. .   ..+++++||++|.|++++++.+.+.+..
T Consensus       112 ~p~iiv~NKiD~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         112 IPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             CCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CcceeccccccccCHHHHHHHHHHHHHHHHHhhcCCCCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            58899999999864321111  111222222 1   3478999999999999999999887754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.92  E-value=1.7e-05  Score=57.51  Aligned_cols=56  Identities=23%  Similarity=0.127  Sum_probs=41.0

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHh-----CCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREH-----GLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~-----~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      .|+++|+||+|+.........+........     ..+++++||++|.||+++++.+.+.+
T Consensus       121 ~~~i~v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSa~~g~gv~~L~~~i~~~~  181 (186)
T d1mkya2         121 RASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMIDAMNLAY  181 (186)
T ss_dssp             CEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             CceeeeccchhhhcchhhhhhhHHHHHHHHhcccCCCeEEEEeCCCCCCHHHHHHHHHHHH
Confidence            489999999998655544445444333331     34689999999999999999986554

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.84  E-value=8.9e-07  Score=65.19  Aligned_cols=59  Identities=19%  Similarity=0.140  Sum_probs=40.3

Q ss_pred             CeEEEEeecCCCccCCC----------------CCHHHHHHHHHH----------hCCcEEEecccCCCcHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARRE----------------VKKEEGEVFARE----------HGLVFMETSAKLATNVEEAFIDTAK   54 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~----------------v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~f~~l~~   54 (245)
                      +|+++||||.|+...+.                -+...+..+...          ..+.+++|||++|.||+++|+.+.+
T Consensus       113 ~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~  192 (200)
T d2bcjq2         113 SSVILFLNKKDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKD  192 (200)
T ss_dssp             SEEEEEEECHHHHHHHTTTSCHHHHSTTCCSCSSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             ccEEEecchhhhhhhcccchHHHHhcccccCCchhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHH
Confidence            48999999999843221                223333332221          1234789999999999999999988


Q ss_pred             HHHHH
Q psy13390         55 EIYEK   59 (245)
Q Consensus        55 ~~~~~   59 (245)
                      .|.+.
T Consensus       193 ~I~~~  197 (200)
T d2bcjq2         193 TILQL  197 (200)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88754

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.80  E-value=9.1e-05  Score=60.46  Aligned_cols=108  Identities=13%  Similarity=0.115  Sum_probs=62.7

Q ss_pred             EEEEEcCCChhhhhh-----hhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccC----
Q psy13390        115 KLQIWDTAGQEAFRS-----ITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDAR----  185 (245)
Q Consensus       115 ~~~l~Dt~G~~~~~~-----~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~----  185 (245)
                      .+.||||||......     +....+..+|+++++.|..-  +-.+ ..++..+..   .++|+++|.||+|....    
T Consensus       108 ~~~l~DtPG~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~~--~~~d-~~l~~~l~~---~~k~~~~V~nK~D~~~~~~~~  181 (400)
T d1tq4a_         108 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRF--KKND-IDIAKAISM---MKKEFYFVRTKVDSDITNEAD  181 (400)
T ss_dssp             TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEEEESSCC--CHHH-HHHHHHHHH---TTCEEEEEECCHHHHHHHHHT
T ss_pred             eEEEEeCCCcccccccHHHHHHHhhhhcceEEEEecCCCC--CHHH-HHHHHHHHH---cCCCEEEEEeCcccccchhhh
Confidence            478999999754332     22334667899988887542  2222 223333433   35899999999996310    


Q ss_pred             ---cccCHHH----HHH----HHHHcCC---cEEEeccCC--CCCHHHHHHHHHHHHHH
Q psy13390        186 ---REVKKEE----GEV----FAREHGL---VFMETSAKL--ATNVEEAFIDTAKEIYE  228 (245)
Q Consensus       186 ---~~~~~~~----~~~----~~~~~~~---~~~~~Sa~~--~~~i~~~~~~i~~~i~~  228 (245)
                         .....+.    .+.    .....++   ++|.+|..+  ..++..+.+.+.+.+.+
T Consensus       182 ~~~~~~~~e~~l~~ir~~~~~~l~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~~  240 (400)
T d1tq4a_         182 GEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPI  240 (400)
T ss_dssp             TCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCG
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhHH
Confidence               1111111    111    1222233   488888764  45888888888776643

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.74  E-value=1.7e-05  Score=58.13  Aligned_cols=59  Identities=25%  Similarity=0.229  Sum_probs=40.0

Q ss_pred             CeEEEEeecCCCccCC----------------CCCHHHHHHHHHH-h----------CCcEEEecccCCCcHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARR----------------EVKKEEGEVFARE-H----------GLVFMETSAKLATNVEEAFIDTA   53 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~----------------~v~~~~~~~~~~~-~----------~~~~~~~Sa~~~~~i~~~f~~l~   53 (245)
                      +|++|||||+|+.+.+                .-..+.+..+... +          .+.+++|||+++.||+++|+.+.
T Consensus       112 ~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~  191 (200)
T d1zcba2         112 VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVK  191 (200)
T ss_dssp             SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred             ceEEEEeccchhhhhhccccHHHHhCccccCCcchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHH
Confidence            5899999999974211                1123344433322 1          23466899999999999999988


Q ss_pred             HHHHHH
Q psy13390         54 KEIYEK   59 (245)
Q Consensus        54 ~~~~~~   59 (245)
                      +.|.+.
T Consensus       192 d~i~~~  197 (200)
T d1zcba2         192 DTILHD  197 (200)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            877654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.74  E-value=8.5e-06  Score=62.70  Aligned_cols=98  Identities=12%  Similarity=-0.011  Sum_probs=52.0

Q ss_pred             CCCCCCCCCCcceeeEEEE--EECCeEEEEEEEcCCChhhhhh-------hhHh--hccCCcEEEEEEeCCChh-hHHHH
Q psy13390         89 SGSSGSSSGGGVEFGARMI--TIDGKQIKLQIWDTAGQEAFRS-------ITRS--YYRGAAGALLVYDITRRE-TFNHL  156 (245)
Q Consensus        89 ~~~~~~~~tig~~~~~~~~--~~~~~~~~~~l~Dt~G~~~~~~-------~~~~--~~~~~d~vi~v~d~~~~~-s~~~~  156 (245)
                      .......+..+.+......  ...+  ..+.+|||||......       ....  .....|+++||++++... +..+ 
T Consensus        55 ~~~~~vs~~~~~T~~~~~~~~~~~g--~~i~viDTPGl~~~~~~~~~~~~~i~~~~~~~~~~~il~v~~~~~~r~~~~~-  131 (257)
T d1h65a_          55 ERVVSISPFQSEGPRPVMVSRSRAG--FTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLD-  131 (257)
T ss_dssp             SCCSCCCSSSCCCSSCEEEEEEETT--EEEEEEECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHH-
T ss_pred             CCceeecCCCCcceeEEEEEEEecc--EEEEEEeeecccCCcchHHHHHHHHHHHHhcCCCCeEEEEEECCCCCCCHHH-
Confidence            3333334444444433333  4444  4699999999642211       1111  234568999999987532 2222 


Q ss_pred             HHHHHHHHhhcCC--CCeEEEEEeCCCCccCcccC
Q psy13390        157 TTWLEDARQHSNS--NMVIMLIGNKSDLDARREVK  189 (245)
Q Consensus       157 ~~~~~~~~~~~~~--~~piivv~nK~Dl~~~~~~~  189 (245)
                      ...+..+......  -.++++|.||+|........
T Consensus       132 ~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~~~~  166 (257)
T d1h65a_         132 KLVAKAITDSFGKGIWNKAIVALTHAQFSPPDGLP  166 (257)
T ss_dssp             HHHHHHHHHHHCGGGGGGEEEEEECCSCCCGGGCC
T ss_pred             HHHHHHHHHHcchhhhhCEEEEEECcccCCcCCCc
Confidence            2222333322211  25789999999986544333

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.67  E-value=2.6e-05  Score=56.71  Aligned_cols=27  Identities=22%  Similarity=0.074  Sum_probs=23.4

Q ss_pred             cEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390         33 VFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus        33 ~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      .+++|||++|.||+++|+.+.+.+++.
T Consensus       168 ~~~~tSA~~~~nv~~~F~~v~~~il~~  194 (195)
T d1svsa1         168 YTHFTCATDTKNVQFVFDAVTDVIIKN  194 (195)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             eeEEEEeECCHhHHHHHHHHHHHHHhc
Confidence            467899999999999999998877654

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.63  E-value=0.00011  Score=58.15  Aligned_cols=107  Identities=7%  Similarity=0.005  Sum_probs=63.7

Q ss_pred             EEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCcccCHHHHH
Q psy13390        115 KLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREVKKEEGE  194 (245)
Q Consensus       115 ~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~~~~~~~  194 (245)
                      .+.|+.|.|.-.-.   ......+|..++|.....++..+....   .+.+     .+=++|.||+|+............
T Consensus       145 d~iiiETVG~gq~e---~~~~~~~D~~v~v~~p~~GD~iQ~~k~---gilE-----~aDi~vvNKaD~~~~~~~~~~~~~  213 (323)
T d2qm8a1         145 DVILVETVGVGQSE---TAVADLTDFFLVLMLPGAGDELQGIKK---GIFE-----LADMIAVNKADDGDGERRASAAAS  213 (323)
T ss_dssp             CEEEEEECSSSSCH---HHHHTTSSEEEEEECSCC------CCT---THHH-----HCSEEEEECCSTTCCHHHHHHHHH
T ss_pred             CeEEEeehhhhhhh---hhhhcccceEEEEeeccchhhhhhhhh---hHhh-----hhheeeEeccccccchHHHHHHHH
Confidence            46777887653322   224566999999999988765554322   1222     233899999998643222111111


Q ss_pred             HHHH----------HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHHhc
Q psy13390        195 VFAR----------EHGLVFMETSAKLATNVEEAFIDTAKEIYEKIQE  232 (245)
Q Consensus       195 ~~~~----------~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~~~  232 (245)
                      .+..          .+..+++.+||++|.|++++.+++.+........
T Consensus       214 ~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~~~~~  261 (323)
T d2qm8a1         214 EYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSKLTAT  261 (323)
T ss_dssp             HHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHHHHHC
Confidence            1111          1335699999999999999999998776554433

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.47  E-value=2.6e-05  Score=56.08  Aligned_cols=56  Identities=20%  Similarity=0.122  Sum_probs=40.5

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHHhC-CcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFAREHG-LVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      .|+++|.||+|+...+.........+...++ .+++++||++|.|++++++.+++.+
T Consensus       114 ~~~i~v~~k~d~~~~~~~~~~~~~~~~~~~~~~~~~~vSA~~g~gi~~L~~~i~~~l  170 (179)
T d1egaa1         114 APVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKHL  170 (179)
T ss_dssp             SCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHHHTTC
T ss_pred             CceeeeeeeeeccchhhhhhhHhhhhhhhcCCCCEEEEeCcCCCCHHHHHHHHHHhC
Confidence            3788999999976543222333445555555 4799999999999999998887654

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=97.36  E-value=8.4e-05  Score=58.89  Aligned_cols=105  Identities=13%  Similarity=0.024  Sum_probs=60.7

Q ss_pred             EEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCccc--CHHH
Q psy13390        115 KLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREV--KKEE  192 (245)
Q Consensus       115 ~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~--~~~~  192 (245)
                      .+.|++|.|.-.-.   ..+...+|.+++|.+....+..+....-   +.+.     +=++|.||+|+......  ...+
T Consensus       148 d~iliEtvG~gq~e---~~i~~~aD~~l~v~~P~~Gd~iq~~k~g---i~e~-----aDi~VvNKaD~~~~~~~~~~~~~  216 (327)
T d2p67a1         148 DVVIVETVGVGQSE---TEVARMVDCFISLQIAGGGDDLQGIKKG---LMEV-----ADLIVINKDDGDNHTNVAIARHM  216 (327)
T ss_dssp             SEEEEEEECCTTHH---HHHHTTCSEEEEEECC------CCCCHH---HHHH-----CSEEEECCCCTTCHHHHHHHHHH
T ss_pred             CeEEEeeccccccc---hhhhhccceEEEEecCCCchhhhhhchh---hhcc-----ccEEEEEeecccchHHHHHHHHH
Confidence            36677776643211   2367789999999988765554433332   2222     23788899998643211  1111


Q ss_pred             HHHHHH-------HcCCcEEEeccCCCCCHHHHHHHHHHHHHHHH
Q psy13390        193 GEVFAR-------EHGLVFMETSAKLATNVEEAFIDTAKEIYEKI  230 (245)
Q Consensus       193 ~~~~~~-------~~~~~~~~~Sa~~~~~i~~~~~~i~~~i~~~~  230 (245)
                      ......       .+..+++.|||++|.|++++.+.|.+......
T Consensus       217 ~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l~  261 (327)
T d2p67a1         217 YESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALT  261 (327)
T ss_dssp             HHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHHHH
Confidence            121111       12346999999999999999999887664433

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=97.23  E-value=0.00011  Score=54.13  Aligned_cols=55  Identities=16%  Similarity=0.242  Sum_probs=36.4

Q ss_pred             eEEEEeecCCCccCCCCC--HHHHHHHHHHh---CCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390          2 VIMLIGNKSDLDARREVK--KEEGEVFAREH---GLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~v~--~~~~~~~~~~~---~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      |++++.||+|+.+.....  ..+...+....   ..+++.+||++|.||+++++.+...+
T Consensus       142 ~iIV~vNK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~i  201 (205)
T d2qn6a3         142 NLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  201 (205)
T ss_dssp             CEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             eeeeccccCCCccchHHHHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhhC
Confidence            688899999986532211  11112222222   35789999999999999998877654

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.94  E-value=0.00048  Score=51.47  Aligned_cols=27  Identities=11%  Similarity=-0.022  Sum_probs=22.5

Q ss_pred             cEEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390         33 VFMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus        33 ~~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +++.+||++|.|++++++.+.....+.
T Consensus       193 ~i~pvSa~~G~gid~Ll~~l~~l~~~~  219 (227)
T d1g7sa4         193 SIIPISAITGEGIPELLTMLMGLAQQY  219 (227)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence            588999999999999998887765443

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.64  E-value=0.0002  Score=53.43  Aligned_cols=26  Identities=23%  Similarity=0.073  Sum_probs=22.4

Q ss_pred             EEEecccCCCcHHHHHHHHHHHHHHH
Q psy13390         34 FMETSAKLATNVEEAFIDTAKEIYEK   59 (245)
Q Consensus        34 ~~~~Sa~~~~~i~~~f~~l~~~~~~~   59 (245)
                      +++|||.++.||+.+|+.+.+.|++.
T Consensus       191 ~h~T~A~Dt~ni~~vf~~v~d~I~~~  216 (221)
T d1azta2         191 PHFTCAVDTENIRRVFNDCRDIIQRM  216 (221)
T ss_dssp             EEECCTTCHHHHHHHHHTTHHHHHHH
T ss_pred             eeecceeccHHHHHHHHHHHHHHHHH
Confidence            56899999999999999988777654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.0013  Score=47.27  Aligned_cols=54  Identities=22%  Similarity=0.321  Sum_probs=36.8

Q ss_pred             CeEEEEeecCCCcc------------CCCCCHHHHHHHHHHhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDA------------RREVKKEEGEVFAREHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      +|+++||||+||.+            .|.|+.+++..+|+.++...| +-.-...|..  .+++...+.
T Consensus       114 ~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a~~~~~~~~-~E~SAk~~~g--v~e~F~~li  179 (185)
T d2atxa1         114 VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY-VECSALTQKG--LKTVFDEAI  179 (185)
T ss_dssp             CCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE-EECCTTTCTT--HHHHHHHHH
T ss_pred             CCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHHHHcCCCEE-EEecCCCCcC--HHHHHHHHH
Confidence            58999999999864            578999999999999884322 2333345543  345544443

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=96.49  E-value=0.0009  Score=49.67  Aligned_cols=50  Identities=20%  Similarity=0.096  Sum_probs=33.9

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHHHHHHH--hCCcEEEecccCCCcHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGEVFARE--HGLVFMETSAKLATNVEEAFIDT   52 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~~~~~~--~~~~~~~~Sa~~~~~i~~~f~~l   52 (245)
                      ++.+||.||+||.++.  ..+....+...  .+.+.+.+||+++.+++++-..+
T Consensus        42 i~pvIvlnK~DL~~~~--~~~~~~~~~~~~~~~~~v~~vSa~~~~g~~~L~~~l   93 (225)
T d1u0la2          42 LETVMVINKMDLYDED--DLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYL   93 (225)
T ss_dssp             CEEEEEECCGGGCCHH--HHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHH
T ss_pred             CCEEEEEeCcccCCHH--HHHHHHHhhcccccceeEEEeccccchhHhhHHHHh
Confidence            5789999999996422  11222233332  34678899999999999876554

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=96.36  E-value=0.003  Score=49.58  Aligned_cols=55  Identities=9%  Similarity=0.055  Sum_probs=36.8

Q ss_pred             EEEeecCCCccCCCCCHHHHHHHHHH----------hCCcEEEecccCCCcHHHHHHHHHHHHHH
Q psy13390          4 MLIGNKSDLDARREVKKEEGEVFARE----------HGLVFMETSAKLATNVEEAFIDTAKEIYE   58 (245)
Q Consensus         4 ~lvgnK~Dl~~~~~v~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~~f~~l~~~~~~   58 (245)
                      ++|.||+|+.............+...          +..+.+.+||++|.|+++++..+.+....
T Consensus       193 i~vvNKaD~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         193 MIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             EEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             eeeEeccccccchHHHHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence            68999999764322222222222222          34569999999999999999999776543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0029  Score=44.85  Aligned_cols=33  Identities=42%  Similarity=0.626  Sum_probs=27.8

Q ss_pred             CeEEEEeecCCCcc------------CCCCCHHHHHHHHHHhCCc
Q psy13390          1 MVIMLIGNKSDLDA------------RREVKKEEGEVFAREHGLV   33 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~------------~~~v~~~~~~~~~~~~~~~   33 (245)
                      +|++|||||+|+.+            .+.++.+++..+|+.++..
T Consensus       107 ~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~  151 (177)
T d1kmqa_         107 VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANRIGAF  151 (177)
T ss_dssp             SCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCS
T ss_pred             CceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHHcCCc
Confidence            58999999999963            3568899999999998863

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.80  E-value=0.013  Score=45.05  Aligned_cols=67  Identities=13%  Similarity=0.074  Sum_probs=43.8

Q ss_pred             EEEEEcCCChhh-------------hhhhhHhhccCCc-EEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q psy13390        115 KLQIWDTAGQEA-------------FRSITRSYYRGAA-GALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKS  180 (245)
Q Consensus       115 ~~~l~Dt~G~~~-------------~~~~~~~~~~~~d-~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~  180 (245)
                      .+.|+||||...             ...+...|+..++ ++++|.+++...+......+...+..   ...++++|.||+
T Consensus       126 ~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~~~~il~v~~a~~~~~~~~~~~~~~~~~~---~~~r~i~Vltk~  202 (299)
T d2akab1         126 NLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDP---QGQRTIGVITKL  202 (299)
T ss_dssp             SEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCT---TCSSEEEEEECG
T ss_pred             CeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCccceeeeecccccchhhhHHHHHHHHhCc---CCCceeeEEecc
Confidence            489999999632             1234556777776 45666667665555555555554432   346889999999


Q ss_pred             CCcc
Q psy13390        181 DLDA  184 (245)
Q Consensus       181 Dl~~  184 (245)
                      |...
T Consensus       203 D~~~  206 (299)
T d2akab1         203 DLMD  206 (299)
T ss_dssp             GGSC
T ss_pred             cccc
Confidence            9854

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.29  E-value=0.011  Score=45.70  Aligned_cols=66  Identities=12%  Similarity=0.134  Sum_probs=42.2

Q ss_pred             EEEEEcCCChhh-------------hhhhhHhhccCCcEEEEEE-eCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCC
Q psy13390        115 KLQIWDTAGQEA-------------FRSITRSYYRGAAGALLVY-DITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKS  180 (245)
Q Consensus       115 ~~~l~Dt~G~~~-------------~~~~~~~~~~~~d~vi~v~-d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~  180 (245)
                      .+.|+||||...             ...+...|+..++.+++++ ++.....-+....+...+   .+...++++|.||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~---~~~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEV---DPEGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHH---CSSCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHh---CcCCCeEEEEEecc
Confidence            589999999632             2245667899999866665 444333333333443333   22346899999999


Q ss_pred             CCc
Q psy13390        181 DLD  183 (245)
Q Consensus       181 Dl~  183 (245)
                      |..
T Consensus       209 D~~  211 (306)
T d1jwyb_         209 DLM  211 (306)
T ss_dssp             TSS
T ss_pred             ccc
Confidence            985

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=95.20  E-value=0.0013  Score=48.88  Aligned_cols=51  Identities=16%  Similarity=0.080  Sum_probs=35.1

Q ss_pred             CeEEEEeecCCCccCCCCCHHHHH---HHHHHhCCcEEEecccCCCcHHHHHHHH
Q psy13390          1 MVIMLIGNKSDLDARREVKKEEGE---VFAREHGLVFMETSAKLATNVEEAFIDT   52 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~~v~~~~~~---~~~~~~~~~~~~~Sa~~~~~i~~~f~~l   52 (245)
                      ++.+||.||+||.++.. ..+...   ......|.+.+.+||+++.|++++-..+
T Consensus        42 i~pvIvlnK~DL~~~~~-~~~~~~~~~~~y~~~g~~v~~~Sa~~~~gl~~L~~~l   95 (231)
T d1t9ha2          42 IQPIICITKMDLIEDQD-TEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHF   95 (231)
T ss_dssp             CEEEEEEECGGGCCCHH-HHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGG
T ss_pred             CCEEEEEecccccccHH-HHHHHHHHHHHHhhccccceeeecCChhHHHHHHHhh
Confidence            57899999999965321 111122   2334568999999999999998765544

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.08  E-value=0.0076  Score=47.26  Aligned_cols=54  Identities=19%  Similarity=0.111  Sum_probs=34.2

Q ss_pred             EEEeecCCCccCCCCC--HHHHHHHHH-------HhCCcEEEecccCCCcHHHHHHHHHHHHH
Q psy13390          4 MLIGNKSDLDARREVK--KEEGEVFAR-------EHGLVFMETSAKLATNVEEAFIDTAKEIY   57 (245)
Q Consensus         4 ~lvgnK~Dl~~~~~v~--~~~~~~~~~-------~~~~~~~~~Sa~~~~~i~~~f~~l~~~~~   57 (245)
                      ++|.||+|++......  ..+......       .+..+.+.|||++|.||+++++.+.+...
T Consensus       196 i~VvNKaD~~~~~~~~~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~  258 (327)
T d2p67a1         196 LIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  258 (327)
T ss_dssp             EEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             EEEEEeecccchHHHHHHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHH
Confidence            6789999976422111  111111111       12346899999999999999998876543

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=94.05  E-value=0.012  Score=40.53  Aligned_cols=26  Identities=15%  Similarity=0.195  Sum_probs=23.0

Q ss_pred             CCcEEEecccCCCcHHHHHHHHHHHH
Q psy13390         31 GLVFMETSAKLATNVEEAFIDTAKEI   56 (245)
Q Consensus        31 ~~~~~~~Sa~~~~~i~~~f~~l~~~~   56 (245)
                      +.+++++||++|.||+++++.|++.+
T Consensus       136 ~~~~~~iSAk~~~gi~~L~~~l~~~l  161 (161)
T d2gj8a1         136 GHALIRLSARTGEGVDVLRNHLKQSM  161 (161)
T ss_dssp             TEEEEECCTTTCTTHHHHHHHHHHHC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHhhC
Confidence            45799999999999999999998753

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=94.04  E-value=0.055  Score=39.19  Aligned_cols=91  Identities=15%  Similarity=0.088  Sum_probs=53.6

Q ss_pred             EEEEcCCChhhhhhh----hHh---hc-----cCCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q psy13390        116 LQIWDTAGQEAFRSI----TRS---YY-----RGAAGALLVYDITRR-ETFNHLTTWLEDARQHSNSNMVIMLIGNKSDL  182 (245)
Q Consensus       116 ~~l~Dt~G~~~~~~~----~~~---~~-----~~~d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  182 (245)
                      +.|+||+|...+...    ...   ..     ...+-+++|+|++.. .....+...+..+   .    +-=++.||.|.
T Consensus        91 ~ilIDTaGr~~~d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~~---~----~~~lI~TKlDe  163 (207)
T d1okkd2          91 LLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLEQAKKFHEAV---G----LTGVIVTKLDG  163 (207)
T ss_dssp             EEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHHHHHHHHHHH---C----CSEEEEECTTS
T ss_pred             EEEcCccccchhhHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHHHHHHhhhcc---C----CceEEEeccCC
Confidence            899999996444321    111   11     245788999999854 3344444433332   1    12467899996


Q ss_pred             ccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHHH
Q psy13390        183 DARREVKKEEGEVFAREHGLVFMETSAKLATNVEEAF  219 (245)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~~  219 (245)
                      ...    .-.........+.|+.+++  +|++.+++.
T Consensus       164 t~~----~G~~l~~~~~~~~Pi~~i~--~Gq~p~Dl~  194 (207)
T d1okkd2         164 TAK----GGVLIPIVRTLKVPIKFVG--VGEGPDDLQ  194 (207)
T ss_dssp             SCC----CTTHHHHHHHHCCCEEEEE--CSSSTTCEE
T ss_pred             CCC----ccHHHHHHHHHCCCEEEEe--CCCChHhCc
Confidence            432    1224456677889987776  466666543

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.68  E-value=0.036  Score=37.94  Aligned_cols=25  Identities=16%  Similarity=0.052  Sum_probs=21.9

Q ss_pred             CCcEEEecccCCCcHHHHHHHHHHH
Q psy13390         31 GLVFMETSAKLATNVEEAFIDTAKE   55 (245)
Q Consensus        31 ~~~~~~~Sa~~~~~i~~~f~~l~~~   55 (245)
                      ..+++++||++|.||+++|+.+.++
T Consensus       135 ~~~~~~vSA~~g~gi~~L~~~I~ke  159 (160)
T d1xzpa2         135 DRHMVKISALKGEGLEKLEESIYRE  159 (160)
T ss_dssp             STTEEEEEGGGTCCHHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHhc
Confidence            4579999999999999999988763

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=93.48  E-value=0.13  Score=37.20  Aligned_cols=91  Identities=16%  Similarity=0.155  Sum_probs=54.0

Q ss_pred             EEEEEcCCChhhhhh-----hh--Hhhcc-----CCcEEEEEEeCCCh-hhHHHHHHHHHHHHhhcCCCCeEEEEEeCCC
Q psy13390        115 KLQIWDTAGQEAFRS-----IT--RSYYR-----GAAGALLVYDITRR-ETFNHLTTWLEDARQHSNSNMVIMLIGNKSD  181 (245)
Q Consensus       115 ~~~l~Dt~G~~~~~~-----~~--~~~~~-----~~d~vi~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~piivv~nK~D  181 (245)
                      .+.|+||+|....+.     +.  ....+     ..+-+++|.|++.. .....+...+..   ..    +-=++.||.|
T Consensus        93 d~ilIDTaGr~~~d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~~~~~~~~~---~~----~~~lIlTKlD  165 (211)
T d2qy9a2          93 DVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEA---VG----LTGITLTKLD  165 (211)
T ss_dssp             SEEEECCCCCGGGHHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHHHHHHHHHH---SC----CCEEEEECCT
T ss_pred             CEEEeccCCCccccHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHHHHhhhhhc---cC----CceEEEeecC
Confidence            389999999644322     11  11222     24689999998753 233333332222   11    2247789999


Q ss_pred             CccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q psy13390        182 LDARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA  218 (245)
Q Consensus       182 l~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  218 (245)
                      ....    .-.....+...+.|+.+++  +|++|+++
T Consensus       166 e~~~----~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  196 (211)
T d2qy9a2         166 GTAK----GGVIFSVADQFGIPIRYIG--VGERIEDL  196 (211)
T ss_dssp             TCTT----TTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             CCCC----ccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            6432    2344556777899988886  68888653

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=92.77  E-value=0.04  Score=40.47  Aligned_cols=45  Identities=29%  Similarity=0.227  Sum_probs=29.0

Q ss_pred             EEEEeecCCCccCCCCCH----HHHHHHHHHhCC-----cEEEecccCCCcHHH
Q psy13390          3 IMLIGNKSDLDARREVKK----EEGEVFAREHGL-----VFMETSAKLATNVEE   47 (245)
Q Consensus         3 ~~lvgnK~Dl~~~~~v~~----~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~   47 (245)
                      ++++.||.|+.+..+-..    ++...+.+..+.     +|+++||++|.||.+
T Consensus       145 iiv~vNK~D~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~~  198 (222)
T d1zunb3         145 IVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVN  198 (222)
T ss_dssp             EEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSS
T ss_pred             EEEEEEccccccccceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCCc
Confidence            788999999875432111    122334444432     578999999999853

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=90.88  E-value=0.31  Score=35.17  Aligned_cols=90  Identities=18%  Similarity=0.181  Sum_probs=53.9

Q ss_pred             EEEEEcCCChhhhhh-------hhH-hhccCCcEEEEEEeCCChh-hHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccC
Q psy13390        115 KLQIWDTAGQEAFRS-------ITR-SYYRGAAGALLVYDITRRE-TFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDAR  185 (245)
Q Consensus       115 ~~~l~Dt~G~~~~~~-------~~~-~~~~~~d~vi~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~  185 (245)
                      .+.|+||+|...+..       +.. ...-..+-+++|+|++... ..+.+...+   . ..  +.. =++.||.|... 
T Consensus        96 d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~---~-~~--~~~-~lI~TKlDet~-  167 (211)
T d1j8yf2          96 EIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFN---Q-AS--KIG-TIIITKMDGTA-  167 (211)
T ss_dssp             SEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH---H-HC--TTE-EEEEECTTSCS-
T ss_pred             ceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhh---c-cc--Ccc-eEEEecccCCC-
Confidence            389999999643321       111 1122467889999987543 233222222   1 11  222 36699999642 


Q ss_pred             cccCHHHHHHHHHHcCCcEEEeccCCCCCHHH
Q psy13390        186 REVKKEEGEVFAREHGLVFMETSAKLATNVEE  217 (245)
Q Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~  217 (245)
                         ..-.....+...++|+.++|  +|++|++
T Consensus       168 ---~~G~~l~~~~~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 ---KGGGALSAVAATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             ---CHHHHHHHHHTTTCCEEEEE--CSSSTTC
T ss_pred             ---cccHHHHHHHHHCcCEEEEe--CCCCccc
Confidence               34556667778899987776  5888765

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=90.69  E-value=0.24  Score=35.79  Aligned_cols=92  Identities=25%  Similarity=0.185  Sum_probs=53.3

Q ss_pred             EEEEEcCCChhhhhh-----hhH--hhcc-----CCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCC
Q psy13390        115 KLQIWDTAGQEAFRS-----ITR--SYYR-----GAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDL  182 (245)
Q Consensus       115 ~~~l~Dt~G~~~~~~-----~~~--~~~~-----~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl  182 (245)
                      .+.|+||+|...++.     +..  ....     ..+-+++|+|++..  .+.+...........    +-=++.+|.|.
T Consensus        95 d~ilIDTaGr~~~d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~--~~~~~~~~~~~~~~~----~~~lI~TKlDe  168 (213)
T d1vmaa2          95 DVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKEAVN----VTGIILTKLDG  168 (213)
T ss_dssp             SEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHHHSC----CCEEEEECGGG
T ss_pred             CEEEEeccccccchHHHHHHHHHHHhhhhhccccccceeEEeeccccC--cchhhhhhhhccccC----CceEEEecccC
Confidence            389999999644322     111  1111     24679999998754  233333222222221    22477899996


Q ss_pred             ccCcccCHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q psy13390        183 DARREVKKEEGEVFAREHGLVFMETSAKLATNVEEA  218 (245)
Q Consensus       183 ~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  218 (245)
                      ..    ..-.....+...+.|+.+++  +|++++++
T Consensus       169 ~~----~~G~~l~~~~~~~~Pi~~i~--~Gq~v~Dl  198 (213)
T d1vmaa2         169 TA----KGGITLAIARELGIPIKFIG--VGEKAEDL  198 (213)
T ss_dssp             CS----CTTHHHHHHHHHCCCEEEEE--CSSSGGGE
T ss_pred             CC----cccHHHHHHHHHCCCEEEEe--CCCCcccC
Confidence            42    22344556777889988886  68888654

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=89.27  E-value=0.1  Score=38.78  Aligned_cols=49  Identities=24%  Similarity=0.272  Sum_probs=29.1

Q ss_pred             eEEEEeecCCCccCCC--CCHHH----HHHHHHHh-C------CcEEEecccCCCcHHHHHH
Q psy13390          2 VIMLIGNKSDLDARRE--VKKEE----GEVFAREH-G------LVFMETSAKLATNVEEAFI   50 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~--v~~~~----~~~~~~~~-~------~~~~~~Sa~~~~~i~~~f~   50 (245)
                      .++++.||.|+.....  -..++    ...+.... +      .+|+++||++|.||.++++
T Consensus       164 ~iiv~iNKmD~~~~~~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~~  225 (245)
T d1r5ba3         164 HLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRVD  225 (245)
T ss_dssp             SEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCCC
T ss_pred             eEEEEEEcCCCCccchhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccchh
Confidence            3778999999863211  11111    12222221 2      3689999999999976543

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=89.18  E-value=0.99  Score=32.22  Aligned_cols=92  Identities=21%  Similarity=0.176  Sum_probs=50.1

Q ss_pred             EEEEEcCCChhhhhh-----hhH-hhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEEEEEeCCCCccCccc
Q psy13390        115 KLQIWDTAGQEAFRS-----ITR-SYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIMLIGNKSDLDARREV  188 (245)
Q Consensus       115 ~~~l~Dt~G~~~~~~-----~~~-~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~Dl~~~~~~  188 (245)
                      .+.|+||+|...++.     +.. ....+.+-+++|.|++.+..  .+ .....+.+...  + -=++.+|.|...    
T Consensus        94 d~vlIDTaGr~~~d~~~~~el~~~~~~~~~~~~llv~~a~~~~~--~~-~~~~~f~~~~~--~-~~~I~TKlDe~~----  163 (207)
T d1ls1a2          94 DLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTGQE--AL-SVARAFDEKVG--V-TGLVLTKLDGDA----  163 (207)
T ss_dssp             CEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGTHH--HH-HHHHHHHHHTC--C-CEEEEECGGGCS----
T ss_pred             cceeecccccchhhhhhHHHHHHHHhhcCCceEEEEeccccchh--HH-HHHHHHHhhCC--C-CeeEEeecCccc----
Confidence            479999999654432     111 12346788999999876532  22 12222222221  1 137789999632    


Q ss_pred             CHHHHHHHHHHcCCcEEEeccCCCCCHHHH
Q psy13390        189 KKEEGEVFAREHGLVFMETSAKLATNVEEA  218 (245)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~~  218 (245)
                      ..-....++...+.|+.+++  +|+..+++
T Consensus       164 ~~G~~l~~~~~~~~Pi~~i~--~Gq~pedl  191 (207)
T d1ls1a2         164 RGGAALSARHVTGKPIYFAG--VSEKPEGL  191 (207)
T ss_dssp             SCHHHHHHHHHHCCCEEEEC--------CC
T ss_pred             cchHHHHHHHHHCCCEEEEe--CCCChhhc
Confidence            23445666777899987775  35555544

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=88.46  E-value=2  Score=30.51  Aligned_cols=66  Identities=12%  Similarity=0.056  Sum_probs=45.8

Q ss_pred             EEEEEEEcCCChhhhhhhhHhhccCCcEEEEEEeCCChhhHHHHHHHHHHHHhhcCCCCeEE-EEEeCCCCcc
Q psy13390        113 QIKLQIWDTAGQEAFRSITRSYYRGAAGALLVYDITRRETFNHLTTWLEDARQHSNSNMVIM-LIGNKSDLDA  184 (245)
Q Consensus       113 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vi~v~d~~~~~s~~~~~~~~~~~~~~~~~~~pii-vv~nK~Dl~~  184 (245)
                      .+.+.++|+++...  ......+..+|.++++...+ ..++....+.+..+.+   .+.|++ +|.|+.+..+
T Consensus       111 ~~d~IiiD~~~~~~--~~~~~~l~~aD~viiv~~~~-~~s~~~~~~~~~~~~~---~~~~~~giv~N~~~~~~  177 (237)
T d1g3qa_         111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPE-ISCLTDTMKVGIVLKK---AGLAILGFVLNRYGRSD  177 (237)
T ss_dssp             GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSC-HHHHHHHHHHHHHHHH---TTCEEEEEEEEEETSCT
T ss_pred             cCCEEEEccccccc--ccchhhhhhhhccccccccc-ceecchhhHHHHHHhh---hhhhhhhhhhccccccc
Confidence            45689999987643  23344577899999999865 5566766666655544   346765 7899998643

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.23  E-value=0.13  Score=36.79  Aligned_cols=16  Identities=19%  Similarity=0.376  Sum_probs=13.3

Q ss_pred             CeEEEEeecCCCccCC
Q psy13390          1 MVIMLIGNKSDLDARR   16 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~   16 (245)
                      +|+++|+||+|++..+
T Consensus       109 ~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1         109 PSLLIACNKQDIAMAK  124 (207)
T ss_dssp             CEEEEEEECTTSTTCC
T ss_pred             CcEEEEEECcccCCCC
Confidence            5899999999997543

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=87.81  E-value=0.13  Score=35.50  Aligned_cols=15  Identities=27%  Similarity=0.487  Sum_probs=12.8

Q ss_pred             CeEEEEeecCCCccC
Q psy13390          1 MVIMLIGNKSDLDAR   15 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~   15 (245)
                      +|+++||||+|+.+.
T Consensus       118 ~pillv~nK~Dl~~~  132 (176)
T d1fzqa_         118 VPVLIFANKQDLLTA  132 (176)
T ss_dssp             CCEEEEEECTTSTTC
T ss_pred             CeEEEEEEecccccc
Confidence            589999999999654

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=87.76  E-value=3.6  Score=30.40  Aligned_cols=41  Identities=17%  Similarity=0.099  Sum_probs=27.2

Q ss_pred             CCeEEEEEeCCCCccCcccCHHHHHHHHHHcCCcEEEeccC
Q psy13390        170 NMVIMLIGNKSDLDARREVKKEEGEVFAREHGLVFMETSAK  210 (245)
Q Consensus       170 ~~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  210 (245)
                      .+|++.++|..+......-..+....++...+..++.+||+
T Consensus       199 ~KP~i~v~Nv~E~~~~~~~~~~~l~~~~~~~~~~vI~isa~  239 (278)
T d1jala1         199 LKPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAA  239 (278)
T ss_dssp             TSCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHH
T ss_pred             cchhhhhhccccccccccHHHHHHHHHHHhcCCeEEEeEHH
Confidence            58999999975532111112355666777788889999984

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=83.94  E-value=0.29  Score=33.63  Aligned_cols=15  Identities=33%  Similarity=0.618  Sum_probs=12.7

Q ss_pred             CeEEEEeecCCCccC
Q psy13390          1 MVIMLIGNKSDLDAR   15 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~   15 (245)
                      .|+++||||+|+.+.
T Consensus       114 ~piiiv~NK~Dl~~~  128 (173)
T d1e0sa_         114 AIILIFANKQDLPDA  128 (173)
T ss_dssp             CEEEEEEECTTSTTC
T ss_pred             ceeeeeeeccccccc
Confidence            589999999998643

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.89  E-value=0.44  Score=34.95  Aligned_cols=46  Identities=24%  Similarity=0.244  Sum_probs=29.0

Q ss_pred             eEEEEeecCCCccCCCCCH----HHHHHHHHHhC-----CcEEEecccCCCcHHH
Q psy13390          2 VIMLIGNKSDLDARREVKK----EEGEVFAREHG-----LVFMETSAKLATNVEE   47 (245)
Q Consensus         2 ~~~lvgnK~Dl~~~~~v~~----~~~~~~~~~~~-----~~~~~~Sa~~~~~i~~   47 (245)
                      +++++.||.|+.+..+-..    ++...+....+     +.|..+||..|.|+-+
T Consensus       146 ~iiv~iNKmD~~~~d~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni~~  200 (239)
T d1f60a3         146 QLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIE  200 (239)
T ss_dssp             EEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTB
T ss_pred             eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCccee
Confidence            4788999999865432111    22233444433     4588999999988754

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.38  E-value=0.33  Score=34.25  Aligned_cols=16  Identities=38%  Similarity=0.470  Sum_probs=13.2

Q ss_pred             CeEEEEeecCCCccCC
Q psy13390          1 MVIMLIGNKSDLDARR   16 (245)
Q Consensus         1 ~~~~lvgnK~Dl~~~~   16 (245)
                      +|+++|+||+|+.+.+
T Consensus       112 ~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_         112 IDILIACNKSELFTAR  127 (209)
T ss_dssp             CCEEEEEECTTSTTCC
T ss_pred             CCeEEEEEeecccccC
Confidence            5899999999986543

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.88  E-value=2.3  Score=30.40  Aligned_cols=93  Identities=10%  Similarity=-0.003  Sum_probs=47.3

Q ss_pred             EEEEcCCChhhhhhhhH--------hhccCCcEEEEEEeCCChhhHHHHHH-HHHHHHhhcCCCCeEEEEEeCCCCccCc
Q psy13390        116 LQIWDTAGQEAFRSITR--------SYYRGAAGALLVYDITRRETFNHLTT-WLEDARQHSNSNMVIMLIGNKSDLDARR  186 (245)
Q Consensus       116 ~~l~Dt~G~~~~~~~~~--------~~~~~~d~vi~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~piivv~nK~Dl~~~~  186 (245)
                      ..++.+.|...-..+..        ...-..++++.|+|+......-.... +...+.. .     =+||.||+|+....
T Consensus        92 ~iiIE~sG~~~p~~l~~~~~~~~~~~~~~~l~~vi~vVDa~~~~~~~~~~~~~~~Qi~~-A-----D~ivlNK~Dl~~~~  165 (222)
T d1nija1          92 RLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGY-A-----DRILLTKTDVAGEA  165 (222)
T ss_dssp             EEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHT-C-----SEEEEECTTTCSCT
T ss_pred             eeEEeecccchhhHHHHHHHhhhcccccccccchhhhhhhhhhhhhhhhhHHHHHHHHh-C-----CcccccccccccHH
Confidence            46777777633222111        11223588999999987543222111 2222222 2     27889999986432


Q ss_pred             ccCHHHHHHHHHHc--CCcEEEeccCCCCCHHHHH
Q psy13390        187 EVKKEEGEVFAREH--GLVFMETSAKLATNVEEAF  219 (245)
Q Consensus       187 ~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~~~  219 (245)
                          +..+...+..  .++++++| .-...+..+|
T Consensus       166 ----~~~~~~l~~lNP~a~Ii~~~-~g~v~~~~ll  195 (222)
T d1nija1         166 ----EKLHERLARINARAPVYTVT-HGDIDLGLLF  195 (222)
T ss_dssp             ----HHHHHHHHHHCSSSCEEECC-SSCCCGGGGS
T ss_pred             ----HHHHHHHHHHhCCCeEEEee-CCccCHHHhh
Confidence                2333333333  46677655 2234555444