Psyllid ID: psy1340

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50-
Protein Sequence
MYEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQNLM
Secondary Structure (PSIPRED)
cccccEEcEEEEEEEEEEccEEEEEEEEEccccccccccEEEEEEEEcccc
Secondary Structure Prediction (SSPRO)
ccccccccEEEEEEEEEccccEEEEEEEcccccccccccHEEEHEEccccc
Coil and Loop (DISEMBL)
myegelcdIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQNLM
Flexible Loop (DISEMBL)
MYEGELCDIYTATILTLRGASYVSYRVYDWKdrvhssqnrisvqfklqnlm
Low Complexity Region (SEG)
MYEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQNLM
Disordered region (IsUnstruct)
****ELCDIYTATILTLRGASYVSYRVYDWKDRVH****************
Disordered Region (DISOPRED)
****ELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQNL*
Disordered Region (DISEMBL)
MYEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQNLM
Disordered Region (DISPRO)
***GELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MYEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQNLM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	51
345497419	2064	PREDICTED: hypothetical protein LOC10011	0.921	0.022	0.808	5e-16
307213135	2046	Contactin-associated protein-like 2 [Har	0.921	0.022	0.808	5e-16
332019922	2026	Neurexin-4 [Acromyrmex echinatior]	0.921	0.023	0.808	6e-16
383852936	1951	PREDICTED: uncharacterized protein LOC10	0.921	0.024	0.808	7e-16
307184317	1984	Contactin associated protein like 5-1 [C	0.921	0.023	0.808	7e-16
380015075	1897	PREDICTED: neurexin-4-like [Apis florea]	0.921	0.024	0.808	8e-16
328780915	1917	PREDICTED: axotactin [Apis mellifera]	0.921	0.024	0.808	8e-16
442630275	2047	axotactin, isoform I [Drosophila melanog	0.882	0.021	0.822	9e-16
442630269	2147	axotactin, isoform F [Drosophila melanog	0.882	0.020	0.822	9e-16
386770608	2070	axotactin, isoform D [Drosophila melanog	0.882	0.021	0.822	9e-16

>gi|345497419|ref|XP_003427983.1| PREDICTED: hypothetical protein LOC100115644 [Nasonia vitripennis]

 Score = 88.6 bits (218), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 43/47 (91%)

Query: 2   YEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQ 48
           YEGE CD+YTATILTLRG+SYVS+RVYDWKDRVHSS NRIS+ FK +
Sbjct: 422 YEGERCDVYTATILTLRGSSYVSFRVYDWKDRVHSSVNRISLAFKTK 468

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307213135|gb|EFN88657.1| Contactin-associated protein-like 2 [Harpegnathos saltator]

 Score = 88.2 bits (217), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 43/47 (91%)

Query: 2   YEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQ 48
           YEGE CD+YTATILTLRG+SYVS+RVYDWKDRVHSS NRIS+ FK +
Sbjct: 398 YEGERCDVYTATILTLRGSSYVSFRVYDWKDRVHSSVNRISLAFKTK 444

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019922|gb|EGI60382.1| Neurexin-4 [Acromyrmex echinatior]

 Score = 88.2 bits (217), Expect = 6e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 43/47 (91%)

Query: 2   YEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQ 48
           YEGE CD+YTATILTLRG+SYVS+RVYDWKDRVHSS NRIS+ FK +
Sbjct: 397 YEGERCDVYTATILTLRGSSYVSFRVYDWKDRVHSSVNRISLAFKTK 443

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852936|ref|XP_003701981.1| PREDICTED: uncharacterized protein LOC100875110 [Megachile rotundata]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 43/47 (91%)

Query: 2   YEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQ 48
           YEGE CD+YTATILTLRG+SYVS+RVYDWKDRVHSS NRIS+ FK +
Sbjct: 398 YEGERCDVYTATILTLRGSSYVSFRVYDWKDRVHSSVNRISLAFKTK 444

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184317|gb|EFN70775.1| Contactin associated protein like 5-1 [Camponotus floridanus]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 43/47 (91%)

Query: 2   YEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQ 48
           YEGE CD+YTATILTLRG+SYVS+RVYDWKDRVHSS NRIS+ FK +
Sbjct: 368 YEGERCDVYTATILTLRGSSYVSFRVYDWKDRVHSSVNRISLAFKTK 414

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380015075|ref|XP_003691537.1| PREDICTED: neurexin-4-like [Apis florea]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 43/47 (91%)

Query: 2   YEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQ 48
           YEGE CD+YTATILTLRG+SYVS+RVYDWKDRVHSS NRIS+ FK +
Sbjct: 362 YEGERCDVYTATILTLRGSSYVSFRVYDWKDRVHSSVNRISLAFKTK 408

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780915|ref|XP_394721.4| PREDICTED: axotactin [Apis mellifera]

 Score = 87.8 bits (216), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 38/47 (80%), Positives = 43/47 (91%)

Query: 2   YEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQ 48
           YEGE CD+YTATILTLRG+SYVS+RVYDWKDRVHSS NRIS+ FK +
Sbjct: 362 YEGERCDVYTATILTLRGSSYVSFRVYDWKDRVHSSVNRISLAFKTK 408

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442630275|ref|NP_524656.5| axotactin, isoform I [Drosophila melanogaster] gi|440215312|gb|AAF47929.5| axotactin, isoform I [Drosophila melanogaster]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 2   YEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFK 46
           YEGE CDIYTATI+TLRGASYVSYR+YDWKDRVHSS  RIS+ F+
Sbjct: 471 YEGEHCDIYTATIITLRGASYVSYRIYDWKDRVHSSTRRISLMFR 515

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442630269|ref|NP_001261422.1| axotactin, isoform F [Drosophila melanogaster] gi|440215309|gb|AGB94117.1| axotactin, isoform F [Drosophila melanogaster]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 2   YEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFK 46
           YEGE CDIYTATI+TLRGASYVSYR+YDWKDRVHSS  RIS+ F+
Sbjct: 471 YEGEHCDIYTATIITLRGASYVSYRIYDWKDRVHSSTRRISLMFR 515

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|386770608|ref|NP_001246632.1| axotactin, isoform D [Drosophila melanogaster] gi|442630273|ref|NP_001261424.1| axotactin, isoform H [Drosophila melanogaster] gi|383291766|gb|AFH04303.1| axotactin, isoform D [Drosophila melanogaster] gi|440215311|gb|AGB94119.1| axotactin, isoform H [Drosophila melanogaster]

 Score = 87.4 bits (215), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 37/45 (82%), Positives = 41/45 (91%)

Query: 2   YEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFK 46
           YEGE CDIYTATI+TLRGASYVSYR+YDWKDRVHSS  RIS+ F+
Sbjct: 471 YEGEHCDIYTATIITLRGASYVSYRIYDWKDRVHSSTRRISLMFR 515

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	51
FB|FBgn0262870	1685	axo "axotactin" [Drosophila me	0.862	0.026	0.711	2.2e-10

FB|FBgn0262870 axo "axotactin" [Drosophila melanogaster (taxid:7227)]

 Score = 162 (62.1 bits), Expect = 2.2e-10, P = 2.2e-10
 Identities = 32/45 (71%), Positives = 36/45 (80%)

Query:     2 YEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFK 46
             YEGE    YT  I+TLRGASYVSYR+YDWKDRVHSS  RIS+ F+
Sbjct:   469 YEGEALRHYTH-IITLRGASYVSYRIYDWKDRVHSSTRRISLMFR 512


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.134   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       51        51   0.00091  102 3  11 22  0.35    27
                                                     29  0.44    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  460 (49 KB)
  Total size of DFA:  83 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  5.23u 0.09s 5.32t   Elapsed:  00:00:17
  Total cpu time:  5.23u 0.09s 5.32t   Elapsed:  00:00:17
  Start:  Thu Aug 15 14:44:25 2013   End:  Thu Aug 15 14:44:42 2013

GO:0008038 "neuron recognition" evidence=ISS

GO:0019226 "transmission of nerve impulse" evidence=IMP

GO:0005576 "extracellular region" evidence=ISS

GO:0004867 "serine-type endopeptidase inhibitor activity" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	51
KOG3514|consensus	1591		91.26
cd00110	151	LamG Laminin G domain; Laminin G-like domains are	88.95
KOG3516|consensus	1306		85.52
cd07279	112	PX_SNX20_21_like The phosphoinositide binding Phox	80.8
PF07067	236	DUF1340: Protein of unknown function (DUF1340); In	80.43

>KOG3514|consensus

Probab=91.26  E-value=0.28  Score=42.73  Aligned_cols=46  Identities=20%  Similarity=0.468  Sum_probs=39.5

Q ss_pred             Cccceecee-eeeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340           2 YEGELCDIY-TATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus         2 YEge~Cd~y-taT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      |.|+.|++- ..-+.|.+|..|++|-+-  .+-+.|+..-|+|.|||.|
T Consensus       239 ~dgq~cekeK~~~eaTF~G~ef~~YDls--~npI~s~~d~itl~FrT~q  285 (1591)
T KOG3514|consen  239 HDGQNCEKEKNDGEATFGGDEFVGYDLS--QNPIRSKKDNITLTFRTVQ  285 (1591)
T ss_pred             cCccccccccCcceEEecCceEEEeecc--CCcccccccceEEEEEEec
Confidence            678889885 457899999999999875  3688999999999999986

>cd00110 LamG Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans

Probab=88.95  E-value=0.68  Score=26.17  Aligned_cols=31  Identities=23%  Similarity=0.417  Sum_probs=22.8

Q ss_pred             EEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340          15 LTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus        15 ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      +...|++|+.|...  ...  .....||+.|||.+
T Consensus         2 ~~F~g~~~i~~~~~--~~~--~~~~~i~~~frt~~   32 (151)
T cd00110           2 VSFSGSSYVRLPTL--PAP--RTRLSISFSFRTTS   32 (151)
T ss_pred             eEeCCCceEEecCC--CCC--cceeEEEEEEEeCC
Confidence            45678888887654  222  77888999999975

Proteins that contain LamG domains serve a variety of purposes including signal transduction via cell-surface steroid receptors, adhesion, migration and differentiation through mediation of cell adhesion molecules.

>KOG3516|consensus

Probab=85.52  E-value=0.97  Score=39.05  Aligned_cols=40  Identities=28%  Similarity=0.503  Sum_probs=32.8

Q ss_pred             eceeeeeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340           7 CDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus         7 Cd~ytaT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      |+ |.+-++-++|.|++.||.-.|.  +.+.-++|||-|||-+
T Consensus       173 c~-y~s~vi~fdg~s~~~yr~~~~~--m~s~~d~is~~Fkt~~  212 (1306)
T KOG3516|consen  173 CS-YKSPVIYFDGSSSLLYRFHRKL--MSSLKDVISLKFKTMQ  212 (1306)
T ss_pred             cc-ccCceeEECCccceeeeccccc--cccccceeEEEEEeec
Confidence            44 4566889999999999988665  6677899999999965

>cd07279 PX_SNX20_21_like The phosphoinositide binding Phox Homology domain of Sorting Nexins 20 and 21

Probab=80.80  E-value=1.8  Score=25.60  Aligned_cols=24  Identities=21%  Similarity=0.265  Sum_probs=22.0

Q ss_pred             eeceeeeeEEEEecceeeEEEEee
Q psy1340           6 LCDIYTATILTLRGASYVSYRVYD   29 (51)
Q Consensus         6 ~Cd~ytaT~ltLRG~sYVsyrvyd   29 (51)
                      .|||-+++++.=.|.+||.|.|.-
T Consensus         2 ~~~i~~~~~~~~~~~~yv~Y~I~v   25 (112)
T cd07279           2 KFEIVSARTVKEGEKKYVVYQLAV   25 (112)
T ss_pred             eEEeccCeEEcCCCeeEEEEEEEE
Confidence            499999999999999999999873

The PX domain is a phosphoinositide (PI) binding module present in many proteins with diverse functions. Sorting nexins (SNXs) make up the largest group among PX domain containing proteins. They are involved in regulating membrane traffic and protein sorting in the endosomal system. The PX domain of SNXs binds PIs and targets the protein to PI-enriched membranes. SNXs differ from each other in PI-binding specificity and affinity, and the presence of other protein-protein interaction domains, which help determine subcellular localization and specific function in the endocytic pathway. This subfamily consists of SNX20, SNX21, and similar proteins. SNX20 interacts with P-Selectin glycoprotein ligand-1 (PSGL-1), a surface-expressed mucin that acts as a ligand for the selectin family of adhesion proteins. It may function in the sorting and cycling of PSGL-1 into endosomes. SNX21, also cal

>PF07067 DUF1340: Protein of unknown function (DUF1340); InterPro: IPR009774 This family consists of several hypothetical Streptococcus thermophilus bacteriophage proteins of around 235 residues in length

Probab=80.43  E-value=0.56  Score=34.14  Aligned_cols=25  Identities=20%  Similarity=0.724  Sum_probs=22.6

Q ss_pred             EEEeecccccccccceeEEEEEecc
Q psy1340          25 YRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus        25 yrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      |.-|.|-++++|+|+||-|.++|+.
T Consensus       191 fNkYEWpesLD~EVdRI~LEYRTKG  215 (236)
T PF07067_consen  191 FNKYEWPESLDSEVDRIYLEYRTKG  215 (236)
T ss_pred             hccccCchhhHhhhhhheeeeeccc
Confidence            5679999999999999999999963

The function of this family is unknown.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	51
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	6e-05
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	1e-04
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	3e-04

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E* Length = 226

 Score = 36.9 bits (85), Expect = 6e-05
 Identities = 7/46 (15%), Positives = 18/46 (39%), Gaps = 1/46 (2%)

Query: 1  MYEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFK 46
                      T +  +G   ++Y+ +   DR  +  +R+++ F 
Sbjct: 28 SPASLRGGHAGTTYIFSKGGGQITYK-WPPNDRPSTRADRLAIGFS 72

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A* Length = 178

 Score = 35.6 bits (82), Expect = 1e-04
 Identities = 7/37 (18%), Positives = 19/37 (51%), Gaps = 1/37 (2%)

Query: 10 YTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFK 46
            +T +  +G   ++Y+ +   DR  +  +R+++ F 
Sbjct: 3  LGSTYIFSKGGGQITYK-WPPNDRPSTRADRLAIGFS 38

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus} Length = 184

 Score = 34.8 bits (80), Expect = 3e-04
 Identities = 10/37 (27%), Positives = 19/37 (51%), Gaps = 2/37 (5%)

Query: 10 YTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFK 46
              I T +G+ Y  Y +   ++ + SS + I++ FK
Sbjct: 3  KEEYIATFKGSEYFCYDLS--QNPIQSSSDEITLSFK 37

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	51
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	97.45
1pz7_A	204	Agrin; structural protein; 1.42A {Gallus gallus} S	97.33
2r1d_A	226	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	97.0
3v64_A	191	Low-density lipoprotein receptor-related protein;	96.87
2r16_A	182	Neurexin-1-alpha; beta-sandwich, cell adhesion, sp	96.59
2h0b_A	184	Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A	96.18
2r1b_A	220	Neurexin-1-beta, neurexin I-beta; beta-sandwich, c	96.06
3sh4_A	195	LG3 peptide; actin disassambly, integrin alpha12 B	96.04
3asi_A	410	Neurexin-1-alpha; beta-sandwich, cell adhesion, sy	95.98
3pve_A	189	Agrin, AGRN protein; mRNA splicing, structural gen	95.49
3qcw_A	1245	Neurexin-1-alpha; synaptic adhesion molecule, cell	95.48
3bod_A	178	Neurexin-1-alpha; neurexin1D, LNS6, alternative sp	95.11
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	93.7
1dyk_A	394	Laminin alpha 2 chain; metal binding protein; 2.0A	93.13
2jd4_A	383	Laminin subunit alpha-1; basement membrane protein	92.89
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	91.32
2wjs_A	608	Laminin subunit alpha-2; integrin, secreted, coile	90.79
1d2s_A	170	SHBG, sex hormone-binding globulin; steroid transp	81.81
1qwr_A	319	Mannose-6-phosphate isomerase; structural genomics	81.55

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=97.45  E-value=7.7e-05  Score=56.76  Aligned_cols=46  Identities=26%  Similarity=0.569  Sum_probs=30.7

Q ss_pred             Cccceece-eeeeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340           2 YEGELCDI-YTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus         2 YEge~Cd~-ytaT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      |+|++|+. ..+.+++..|++|+.|+..  ++.+++..+.|+|.|||.+
T Consensus       220 ~~G~~Ce~~~~~~~~~F~G~~~~~y~~~--~~~~~~~~~~i~l~FrT~~  266 (1245)
T 3qcw_A          220 FRGKDCSQGKEEYIATFKGSEYFCYDLS--QNPIQSSSDEITLSFKTLQ  266 (1245)
T ss_dssp             -----------CCEEEECSSCEEEEECT--TSCEEESEEEEEEEEECSC
T ss_pred             ccCCccccCcccceeeeCCcEEEEEccc--cCcccccccEEEEEEEeCC
Confidence            89999996 4578899999999999975  4567788899999999964

>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4 PDB: 1pz8_A 1pz9_A 1q56_A

Probab=97.33  E-value=0.00019  Score=43.88  Aligned_cols=43  Identities=19%  Similarity=0.273  Sum_probs=30.6

Q ss_pred             CCccceeceeeeeEEEEecceeeEEEEee--------------cccccccccceeEEEEEecc
Q psy1340           1 MYEGELCDIYTATILTLRGASYVSYRVYD--------------WKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus         1 ~YEge~Cd~ytaT~ltLRG~sYVsyrvyd--------------wkdrvhs~~nRiSl~Fkt~~   49 (51)
                      .||+..|+..+   +...|.||+.|..-+              |+.   .....|||.|||.+
T Consensus         4 ~~e~~~~~~~~---~~F~G~sy~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~is~~frT~~   60 (204)
T 1pz7_A            4 IIEKAAGDAEA---IAFDGRTYMEYHNAVTKSPDALDYPAEPSEKA---LQSNHFELSIKTEA   60 (204)
T ss_dssp             ---CTTSSSCC---EEEESSCCEEEECCSCCC-------CCSSCEE---ESEEEEEEEEEECC
T ss_pred             ccccccccccc---eeECCceeEEEcCccccccccccccccccccc---ceeEEEEEEEEcCC
Confidence            37999999755   567999999998653              332   24578999999975

>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB: 3biw_E*

Probab=97.00  E-value=0.001  Score=42.50  Aligned_cols=46  Identities=15%  Similarity=0.182  Sum_probs=28.8

Q ss_pred             Cccceeceee-eeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340           2 YEGELCDIYT-ATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus         2 YEge~Cd~yt-aT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      +.|-.|+.+. +.++...| ||++|+.- .+++.....+.|||.|||.+
T Consensus        29 ~~g~r~~~~gc~y~f~~~g-s~i~y~~~-~~~~~~~~~~~isl~FrT~~   75 (226)
T 2r1d_A           29 PASLRGGHAGTTYIFSKGG-GQITYKWP-PNDRPSTRADRLAIGFSTVQ   75 (226)
T ss_dssp             ------CCCSSEEEEEEEE-EEEEEECC-GGGCCCBSEEEEEEEEECCC
T ss_pred             ccccCcccCCeEEEEecCC-cEEEEECC-ccccccccccEEEEEEEeCC
Confidence            4577787653 33778888 99998733 22355666679999999976

>3v64_A Low-density lipoprotein receptor-related protein; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} PDB: 3v65_A

Probab=96.87  E-value=0.00095  Score=40.60  Aligned_cols=38  Identities=13%  Similarity=0.263  Sum_probs=29.1

Q ss_pred             eeEEEEecceeeEEEEeeccc--------ccccccceeEEEEEecc
Q psy1340          12 ATILTLRGASYVSYRVYDWKD--------RVHSSQNRISVQFKLQN   49 (51)
Q Consensus        12 aT~ltLRG~sYVsyrvydwkd--------rvhs~~nRiSl~Fkt~~   49 (51)
                      +-.+...|.||+.|+...++.        .--.....|||.|||.+
T Consensus         2 ~~~~~F~G~sy~~y~~~~~~~~~~~~~~~~~~~~~~~isl~frT~~   47 (191)
T 3v64_A            2 LETLAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEA   47 (191)
T ss_dssp             CCEEEEESSCCEEEECSCCCHHHHCCCCCCEEESEEEEEEEEECSC
T ss_pred             CccceecCceeEEEccccccccccccccccccccceEEEEEEEeCC
Confidence            346789999999999987663        11245678999999975

>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A {Bos taurus}

Probab=96.59  E-value=0.0036  Score=37.75  Aligned_cols=36  Identities=22%  Similarity=0.456  Sum_probs=28.6

Q ss_pred             eeeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340          11 TATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus        11 taT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      ++|.+...|+||+.|..-.+   .++....|||.|||.+
T Consensus         4 ~~~~~~F~G~sy~~~~~~~~---~~~~~~~isl~FrT~~   39 (182)
T 2r16_A            4 EATVLSYDGSMFMKIQLPVV---MHTEAEDVSLRFRSQR   39 (182)
T ss_dssp             -CCEEEEESSCCEEEEEEEE---EEESEEEEEEEEECSC
T ss_pred             ccccEEECCCceEEEECCCc---CCccceEEEEEEEECC
Confidence            57889999999999876544   3467788999999975

>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}

Probab=96.18  E-value=0.0062  Score=36.14  Aligned_cols=37  Identities=27%  Similarity=0.546  Sum_probs=28.7

Q ss_pred             eeeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340          11 TATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus        11 taT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      ..+.....|++|+.|..-.  ....+....|||.|||.+
T Consensus         4 ~~~~~~F~G~sy~~~~~~~--~~~~~~~~~isl~frT~~   40 (184)
T 2h0b_A            4 EEYIATFKGSEYFCYDLSQ--NPIQSSSDEITLSFKTLQ   40 (184)
T ss_dssp             CCCEEEEESSEEEEEECSS--SCEEESEEEEEEEEEESC
T ss_pred             ccceeEECCceEEEEcccc--CccccCccEEEEEEEeCC
Confidence            4678899999999997641  234556789999999975

>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion, splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E* 3mw3_A*

Probab=96.06  E-value=0.009  Score=37.55  Aligned_cols=41  Identities=17%  Similarity=0.386  Sum_probs=27.8

Q ss_pred             eeceeeeeEEEEecceeeEEEEeeccc--ccccccceeEEEEEecc
Q psy1340           6 LCDIYTATILTLRGASYVSYRVYDWKD--RVHSSQNRISVQFKLQN   49 (51)
Q Consensus         6 ~Cd~ytaT~ltLRG~sYVsyrvydwkd--rvhs~~nRiSl~Fkt~~   49 (51)
                      .|+-..+|.---.|.||++|   .|..  +.....++|||.|||.+
T Consensus         5 ~c~~~~t~~~F~~g~s~l~y---~~~~~~~~~~~~~~isl~FrT~~   47 (220)
T 2r1b_A            5 RGGHAGTTYIFSKGGGQITY---KWPPNDRPSTRADRLAIGFSTVQ   47 (220)
T ss_dssp             -CCCCSSEEEEEEEEEEEEE---ECCGGGCCCBSEEEEEEEEECCC
T ss_pred             ccCCCCceEEECCCCeEEEE---ECCCCCcccccCcEEEEEEEeCC
Confidence            47765544433367788877   4654  56666779999999976

>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A

Probab=96.04  E-value=0.0038  Score=38.03  Aligned_cols=36  Identities=3%  Similarity=0.118  Sum_probs=28.9

Q ss_pred             EEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340          14 ILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus        14 ~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      .....|.||++|....+....+.....||+.|||.+
T Consensus         7 ~~~F~G~syl~lp~~~~~~~~~~~~~~is~~frT~~   42 (195)
T 3sh4_A            7 GAYFHDDGFLAFPGHVFSRSLPEVPETIELEVRTST   42 (195)
T ss_dssp             EEEEEEEEEEEECGGGGCCCSTTCCEEEEEEEEECC
T ss_pred             cCEECCCEEEEEccccccccccccceEEEEEEEeCC
Confidence            357789999999987665545566789999999975

>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation, neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos taurus}

Probab=95.98  E-value=0.0071  Score=40.00  Aligned_cols=45  Identities=22%  Similarity=0.578  Sum_probs=31.0

Q ss_pred             CccceeceeeeeEEEEecceeeEEEEeeccc--ccccccceeEEEEEecc
Q psy1340           2 YEGELCDIYTATILTLRGASYVSYRVYDWKD--RVHSSQNRISVQFKLQN   49 (51)
Q Consensus         2 YEge~Cd~ytaT~ltLRG~sYVsyrvydwkd--rvhs~~nRiSl~Fkt~~   49 (51)
                      |.|..|+...++...-+|.+|+.|   +|.+  +......+|+|.|||.+
T Consensus       215 ~~G~~C~~~~~~~~f~~~~~~~~~---~~~~~~~~~~~~~~i~l~frT~~  261 (410)
T 3asi_A          215 FSGPLCNDPGTTYIFSKGGGQITY---KWPPNDRPSTRADRLAIGFSTVQ  261 (410)
T ss_dssp             EESTTSCEECCEEEEEEEEEEEEE---ECCTTCCCCBSEEEEEEEEECCC
T ss_pred             ccCCCCCCCcccccccCCCceEEE---ecCCCCCccceeeEEEEEEEeCC
Confidence            678889876655555578888876   4443  33334558999999975

>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2, protein structure initiative; 1.40A {Mus musculus}

Probab=95.49  E-value=0.0093  Score=35.99  Aligned_cols=39  Identities=13%  Similarity=0.187  Sum_probs=26.1

Q ss_pred             eeeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340          11 TATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus        11 taT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      .+.+....|.||+.|....+..+-.+....|||.|||.+
T Consensus         8 ~~~~~~F~g~syl~~~~~~~~~~~~~~~~~isl~frT~~   46 (189)
T 3pve_A            8 RPFLADFNGFSYLELKGLHTFERDLGEKMALEMVFLARG   46 (189)
T ss_dssp             CBCCEEEESSCEEEECCGGGC-------CEEEEEEEESS
T ss_pred             CceeeEECCCceEEEcCcccccccccceEEEEEEEEeCC
Confidence            455678899999999877554333455778999999975

>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET: NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*

Probab=95.48  E-value=0.012  Score=44.85  Aligned_cols=44  Identities=25%  Similarity=0.517  Sum_probs=36.5

Q ss_pred             CccceeceeeeeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340           2 YEGELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus         2 YEge~Cd~ytaT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      |.|..|+.. ++.+...|++|+.|   .|....|+....|||.|||++
T Consensus       649 ~~G~~C~~~-~~~~~fdGs~~l~~---~~~~~~~~~~~~isl~FrT~~  692 (1245)
T 3qcw_A          649 YLGRSCERE-ATVLSYDGSMFMKI---QLPVVMHTEAEDVSLRFRSQR  692 (1245)
T ss_dssp             EESTTSCEE-CCEEEEESSCCEEE---EEEEEEEESEEEEEEEEECSS
T ss_pred             cccccCccc-ccccccCCCCceEE---ecccccccccceEEEEEEEcC
Confidence            778999874 56788999999876   566778888889999999986

>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium, cell adhesion, EGF-like domain, glycoprotein, membrane, metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C* 2wqz_C* 1c4r_A 3bop_A 3mw4_A*

Probab=95.11  E-value=0.023  Score=34.10  Aligned_cols=37  Identities=16%  Similarity=0.387  Sum_probs=25.7

Q ss_pred             eeEEEE-ecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340          12 ATILTL-RGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus        12 aT~ltL-RG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      .|.... .|.||++|+.-.| ++.....+.|||.|||.+
T Consensus         4 ~t~~~F~~~~s~l~y~~~~~-~~~~~~~~~isl~FrT~~   41 (178)
T 3bod_A            4 GSTYIFSKGGGQITYKWPPN-DRPSTRADRLAIGFSTVQ   41 (178)
T ss_dssp             SCEEEEEEEEEEEEEECCTT-SCCCBSEEEEEEEEECCC
T ss_pred             ceEEEECCCCcEEEEECCCc-CCCCccccEEEEEEEECC
Confidence            355666 4678888864332 355666789999999976

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}

Probab=93.70  E-value=0.093  Score=33.97  Aligned_cols=43  Identities=14%  Similarity=0.259  Sum_probs=30.3

Q ss_pred             cceeceeeeeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340           4 GELCDIYTATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus         4 ge~Cd~ytaT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      +..|...........|.+|+.|..-+|+.   .....|||.|||++
T Consensus       190 ~~~C~~~~~~g~~F~g~sy~~~~~~~~~~---~~~~~isl~frT~~  232 (383)
T 2jd4_A          190 VDRCYVVAQEGTFFEGSGYAALVKEGYKV---RLDLQITLEFRTTS  232 (383)
T ss_dssp             CBCCBSSEESSEEEEEEEEEEEEEEEECC---BSCEEEEEEEEESC
T ss_pred             cccccCcCccCceECCCeEEEEecCcccc---CCceEEEEEEEeCC
Confidence            34565443334678899999997666654   23468999999975

>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus} SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A

Probab=93.13  E-value=0.061  Score=35.32  Aligned_cols=44  Identities=16%  Similarity=0.201  Sum_probs=31.1

Q ss_pred             Cccceeceee-------eeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340           2 YEGELCDIYT-------ATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus         2 YEge~Cd~yt-------aT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      |.|. |....       |+.....+.||+.|..-+|+-   +....||+.|||.+
T Consensus        19 ~~~~-C~~~~~~~~~~~a~~Fg~~~~s~~~~~~~~~~~---~~~~~is~~frT~~   69 (394)
T 1dyk_A           19 VHGP-CVAESEPALLTGSKQFGLSRNSHIAIAFDDTKV---KNRLTIELEVRTEA   69 (394)
T ss_dssp             -CCS-SCCCCCCCBCTTCEECCSSTTCEEEEECCGGGG---SSEEEEEEEEEECC
T ss_pred             CCCc-cCCCccccccccceecCCCCCcEEEEEcCcccc---ccceEEEEEEEeCC
Confidence            4555 75543       666666778999888766653   45778999999975

>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding protein; 1.9A {Mus musculus}

Probab=92.89  E-value=0.052  Score=35.15  Aligned_cols=35  Identities=9%  Similarity=0.036  Sum_probs=26.0

Q ss_pred             eeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340          12 ATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus        12 aT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      |......|.||++|..-+|+.   +....||+.|||.+
T Consensus        21 a~~Fg~~~~S~~~~~~~~~~~---~~~~~is~~frT~~   55 (383)
T 2jd4_A           21 AHQFGLSQNSHLVLPLQQSDV---RKRLQVQLSIRTFA   55 (383)
T ss_dssp             CEECCSSTTCEEEEECCSCCC---SSEEEEEEEEEECC
T ss_pred             ccccCCCCCeeEEEeCCchhc---ccceEEEEEEEcCC
Confidence            344445568999999887753   44678999999975

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}

Probab=91.32  E-value=0.077  Score=36.81  Aligned_cols=31  Identities=26%  Similarity=0.299  Sum_probs=21.9

Q ss_pred             EEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340          15 LTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus        15 ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      +...|++|++|+- +|   ..+..+.|||.|||.+
T Consensus        13 ~~F~g~~~~~y~p-~~---~~~~~~~isl~FrT~~   43 (608)
T 2wjs_A           13 VSSGGDCVRTYRP-EI---KKGSYNNIVVHVKTAV   43 (608)
T ss_dssp             CC----CEEEECC-CC---SCTTEEEEEEEEEESC
T ss_pred             EEcCCCeEEEecC-CC---CCcccceEEEEEecCC
Confidence            4568999999995 44   6778899999999975

>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil, glycoprotein, laminin EGF-like domain, extracellular matrix, laminin G-like domain; HET: NAG; 2.80A {Mus musculus}

Probab=90.79  E-value=0.2  Score=34.77  Aligned_cols=33  Identities=12%  Similarity=0.169  Sum_probs=25.0

Q ss_pred             EEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340          14 ILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus        14 ~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      .++..|++|+.|..-   .+.++....|||.|||.+
T Consensus       205 ~~~F~g~sy~~~~~~---~~~~~~~~~isl~FrT~~  237 (608)
T 2wjs_A          205 TIQFDGEGYALVSRP---IRWYPNISTVMFKFRTFS  237 (608)
T ss_dssp             CEEEEEEEEEEEECC---TTCBTTEEEEEEEEEESC
T ss_pred             ceEECCCcceEEecc---ccCCCcceEEEEEEEeCC
Confidence            588899999877532   234567789999999975

>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin G-like domain, jellyroll, androgen binding protein (ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4 PDB: 1kdk_A* 1kdm_A*

Probab=81.81  E-value=1.9  Score=25.51  Aligned_cols=12  Identities=8%  Similarity=0.141  Sum_probs=10.1

Q ss_pred             cceeEEEEEecc
Q psy1340          38 QNRISVQFKLQN   49 (51)
Q Consensus        38 ~nRiSl~Fkt~~   49 (51)
                      ...||+.|||.+
T Consensus        27 ~~~is~~FrT~~   38 (170)
T 1d2s_A           27 KTSSSFEVRTWD   38 (170)
T ss_dssp             CCEEEEEEEESC
T ss_pred             ceEEEEEEEeCC
Confidence            359999999975

>1qwr_A Mannose-6-phosphate isomerase; structural genomics, D-mannose 6-phosphate, PSI, protein structure initiative; 1.80A {Bacillus subtilis} SCOP: b.82.1.3

Probab=81.55  E-value=0.89  Score=30.58  Aligned_cols=22  Identities=45%  Similarity=0.806  Sum_probs=17.9

Q ss_pred             EEEEecceeeEEEEeeccccccc
Q psy1340          14 ILTLRGASYVSYRVYDWKDRVHS   36 (51)
Q Consensus        14 ~ltLRG~sYVsyrvydwkdrvhs   36 (51)
                      ++-+--+|-+.||+||| ||+..
T Consensus       184 ~~Eiq~~SD~t~R~yDy-~R~g~  205 (319)
T 1qwr_A          184 VLETQQNSDATYRVYDY-DRLDS  205 (319)
T ss_dssp             EEEEEESCCCCEEEECT-TCBCT
T ss_pred             EEEEEeCCccEEEcccc-cccCC
Confidence            67777889999999999 67643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	51
d2r1da1	177	Ligand-binding domain of neurexin 1beta {Rat (Ratt	97.73
d1h30a2	218	Growth-arrest-specific protein Gas6 {Human (Homo s	91.62
d1dyka2	185	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	88.36
d1pz7a_	195	Agrin {Chicken (Gallus gallus) [TaxId: 9031]}	86.32
d2i9aa1	40	Plasminogen activator (urokinase-type) {Human (Hom	84.68
d1d2sa_	170	Sex hormone-binding globulin {Human (Homo sapiens)	84.18
d1dyka1	189	Laminin alpha2 chain {Mouse (Mus musculus) [TaxId:	84.18

>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Ligand-binding domain of neurexin 1beta
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.73  E-value=2.1e-05  Score=45.16  Aligned_cols=37  Identities=19%  Similarity=0.452  Sum_probs=30.9

Q ss_pred             eeEEEEecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340          12 ATILTLRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus        12 aT~ltLRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      +|.+..+|.+|++|+ +.+.++..+...+||+.|||.+
T Consensus         4 ~t~~F~~g~~~i~y~-~~~~~~~~~~~~~is~~FrT~~   40 (177)
T d2r1da1           4 TTYIFSKGGGQITYK-WPPNDRPSTRADRLAIGFSTVQ   40 (177)
T ss_dssp             SEEEEEEEEEEEEEE-CCGGGCCCBSEEEEEEEEECCC
T ss_pred             ccEEeCCCCeEEEEE-CCCccCCCccccEEEEEEEeCC
Confidence            566777999999998 5566777788889999999975

>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Growth-arrest-specific protein Gas6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.62  E-value=0.044  Score=31.50  Aligned_cols=34  Identities=6%  Similarity=0.176  Sum_probs=21.2

Q ss_pred             EEecceeeEEEEeecccccccc-----cceeEEEEEecc
Q psy1340          16 TLRGASYVSYRVYDWKDRVHSS-----QNRISVQFKLQN   49 (51)
Q Consensus        16 tLRG~sYVsyrvydwkdrvhs~-----~nRiSl~Fkt~~   49 (51)
                      -..|++|++|+.-+..-+.+..     ..-|+|.|||.+
T Consensus        19 ~F~G~g~~~~~~~~~~~~~~~~~~~~~~~~isl~frT~~   57 (218)
T d1h30a2          19 FYPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAA   57 (218)
T ss_dssp             EECSSCCEEECCCCBC--------CCBCEEEEEEEEESS
T ss_pred             EeCCCEEEEEeccccccccccccccceeEEEEEEEEcCC
Confidence            4689999999865444333322     235999999975

>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.36  E-value=0.088  Score=29.67  Aligned_cols=29  Identities=14%  Similarity=0.266  Sum_probs=19.9

Q ss_pred             EecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340          17 LRGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus        17 LRG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      ..|++|++|.. +|.  +.+. -.||+.|||.+
T Consensus         8 F~G~~y~~~~~-~~~--~~~~-~~is~~frT~~   36 (185)
T d1dyka2           8 FDGTGFAKAVG-GFK--VGLD-LLVEFEFRTTR   36 (185)
T ss_dssp             EEEEEEEECCS-SBC--CBSE-EEEEEEEEESC
T ss_pred             ECCCceEEEcC-CCC--CCce-EEEEEEEEECC
Confidence            56899998864 232  3332 36999999976

>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Agrin
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=86.32  E-value=0.27  Score=27.93  Aligned_cols=37  Identities=19%  Similarity=0.316  Sum_probs=23.0

Q ss_pred             eEEEEecceeeEEEEeecc-----c------ccccccceeEEEEEecc
Q psy1340          13 TILTLRGASYVSYRVYDWK-----D------RVHSSQNRISVQFKLQN   49 (51)
Q Consensus        13 T~ltLRG~sYVsyrvydwk-----d------rvhs~~nRiSl~Fkt~~   49 (51)
                      ..+..-|.||++|..-.=+     +      .-....+.|||.|||.+
T Consensus         7 ~~~~F~G~sy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~frT~~   54 (195)
T d1pz7a_           7 EAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEA   54 (195)
T ss_dssp             CCEEEESSCCEEEECCSCCC-------CCSSCEEESEEEEEEEEEECC
T ss_pred             cCEEECCceEEEEecccccccccccccccccccccceeEEEEEEEeCC
Confidence            3455679999999532211     1      11223467999999975

>d2i9aa1 g.3.11.1 (A:10-49) Plasminogen activator (urokinase-type) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Plasminogen activator (urokinase-type)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.68  E-value=0.091  Score=27.51  Aligned_cols=12  Identities=25%  Similarity=0.720  Sum_probs=10.3

Q ss_pred             CCccceeceeee
Q psy1340           1 MYEGELCDIYTA   12 (51)
Q Consensus         1 ~YEge~Cd~yta   12 (51)
                      +|+|+||+|++.
T Consensus        27 ~f~G~HCEiDt~   38 (40)
T d2i9aa1          27 KFGGQHCEIDKS   38 (40)
T ss_dssp             TEESTTSCEESS
T ss_pred             ccCceeEEeccc
Confidence            489999999874

>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Sex hormone-binding globulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.18  E-value=0.61  Score=26.02  Aligned_cols=28  Identities=11%  Similarity=0.224  Sum_probs=19.4

Q ss_pred             cceeeEEEEeecccccccccceeEEEEEecc
Q psy1340          19 GASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus        19 G~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      |.++++|--|++.+.   ..+-||+.|||.+
T Consensus        11 g~~~~~~~~~~~~~~---~~~~isf~FrT~~   38 (170)
T d1d2sa_          11 GQEPIAVMTFDLTKI---TKTSSSFEVRTWD   38 (170)
T ss_dssp             CCSCSEEEEEEGGGC---CCCEEEEEEEESC
T ss_pred             CCCCeEEEEEeccCC---ceeEEEEEEEECC
Confidence            455667777765442   4556999999975

>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: Laminin G-like module
domain: Laminin alpha2 chain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=84.18  E-value=0.21  Score=28.28  Aligned_cols=29  Identities=14%  Similarity=0.129  Sum_probs=18.8

Q ss_pred             ecceeeEEEEeecccccccccceeEEEEEecc
Q psy1340          18 RGASYVSYRVYDWKDRVHSSQNRISVQFKLQN   49 (51)
Q Consensus        18 RG~sYVsyrvydwkdrvhs~~nRiSl~Fkt~~   49 (51)
                      -++||+.|..-++.   .+....||+.|||++
T Consensus        22 s~~s~~~~~~~~~~---~~~~~~i~~~frT~~   50 (189)
T d1dyka1          22 SRNSHIAIAFDDTK---VKNRLTIELEVRTEA   50 (189)
T ss_dssp             STTCEEEEECCGGG---GSSEEEEEEEEEECC
T ss_pred             CCCceEEEecCccc---ccccEEEEEEEEECC
Confidence            35666666655443   344456999999985