Psyllid ID: psy13418

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------16
Protein Sequence
RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ
Secondary Structure (PSIPRED)
cEEEccccccccccEEEEEEEEccccccccccEEEEEEEcccccccccccEEEEEEEccccEEEEEccccccccEEEEccccccccccccccccccccccccccEEEEEEEEcccccEEEEccccEEEEEEEEccEEEEEcccccEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cEEEEEccccccEEEEEEEEccccccccccccEEEEEEEcccccccHHHHHHEHHEEccccEEEEcccccEcccEEEcccccccccEEEEcccccccccccccEEEEEEEEccccHHHHHHHHHHHHHHEEccccEEEEEcccccEEEEEEEEEEEccc
Coil and Loop (DISEMBL)
rvvvaglgggikedihwvhdfrrgptddsppleerviqiipspaptvrtaNLALVGSGDFLKLILATEnmkagdilktsmfipripvrakegdaypvgalpmgsivccvekfpgegaHYARAAGNSCTLVRTLHDRVvlqlpskhevavdKHCMAVVAQ
Flexible Loop (DISEMBL)
rvvvaglgggikedihwvhdfrrgptddsppLEERVIQiipspaptvRTANLALVGSGDFLKLILATENmkagdilktsmfiprIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQlpskhevavdkhCMAVVAQ
Low Complexity Region (SEG)
RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ
Disordered region (IsUnstruct)
**VVAGLGGGIKEDIHWVHDFR************RVIQIIPSPAPTVRTANLALVGSGDFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAV***
Disordered Region (DISOPRED)
RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ
Disordered Region (DISEMBL)
RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ
Disordered Region (DISPRO)
RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVA*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	159	2.2.26 [Sep-21-2011]
Q5T653	305	39S ribosomal protein L2,	yes	N/A	0.981	0.511	0.431	6e-29
Q2TA12	306	39S ribosomal protein L2,	yes	N/A	0.981	0.509	0.428	2e-28
Q9D773	306	39S ribosomal protein L2,	yes	N/A	0.981	0.509	0.416	5e-28
Q498T4	304	39S ribosomal protein L2,	yes	N/A	0.981	0.513	0.416	9e-28
Q3J8R7	274	50S ribosomal protein L2	yes	N/A	0.918	0.532	0.337	9e-13
B6JET6	278	50S ribosomal protein L2	yes	N/A	0.911	0.521	0.345	5e-12
Q21M54	275	50S ribosomal protein L2	yes	N/A	0.918	0.530	0.331	5e-12
Q7MPI5	274	50S ribosomal protein L2	yes	N/A	0.817	0.474	0.347	2e-11
Q8DE42	274	50S ribosomal protein L2	yes	N/A	0.817	0.474	0.347	2e-11
A6W389	274	50S ribosomal protein L2	yes	N/A	0.918	0.532	0.337	3e-11

>sp|Q5T653|RM02_HUMAN 39S ribosomal protein L2, mitochondrial OS=Homo sapiens GN=MRPL2 PE=1 SV=2

 Score =  126 bits (316), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 69/160 (43%), Positives = 101/160 (63%), Gaps = 4/160 (2%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTD-DSPPLEERVIQIIPSPAPTVRTANLALVGSGD 59
           R+ V G+GGG K+    +   R  P +  S P EE+VIQ+   P    R+A++ALV  G 
Sbjct: 90  RIRVHGIGGGHKQRYRMIDFLRFRPEETKSGPFEEKVIQVRYDPC---RSADIALVAGGS 146

Query: 60  FLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
             + I+ATENM+AGD +  S  I R+ V A+EGDA+P+GALP+G+++  VE  PG GA Y
Sbjct: 147 RKRWIIATENMQAGDTILNSNHIGRMAVAAREGDAHPLGALPVGTLINNVESEPGRGAQY 206

Query: 120 ARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
            RAAG    L+R ++   ++QLPSK ++ V + C+A V +
Sbjct: 207 IRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETCVATVGR 246

Homo sapiens (taxid: 9606)

>sp|Q2TA12|RM02_BOVIN 39S ribosomal protein L2, mitochondrial OS=Bos taurus GN=MRPL2 PE=1 SV=2

 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 100/161 (62%), Gaps = 5/161 (3%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPP--LEERVIQIIPSPAPTVRTANLALVGSG 58
           R+ V G+GGG K+    +   R  P  +S P   EE+VI +   P    R+A++ALV  G
Sbjct: 90  RIQVHGIGGGHKQRYRMIDFLRFRPEQESKPGPFEEKVIVVRYDPC---RSADIALVAGG 146

Query: 59  DFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAH 118
           +  + I+ATENMKAGD +  S  I R+ V A+EGDA+P+GALP+G+++  VE  PG GA 
Sbjct: 147 NRKRWIIATENMKAGDTILNSDHIGRMAVAAREGDAHPLGALPVGTLINNVESEPGRGAQ 206

Query: 119 YARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
           Y RAAG    L+R ++   ++QLPSK ++ V + C A V +
Sbjct: 207 YIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETCTATVGR 247

Bos taurus (taxid: 9913)

>sp|Q9D773|RM02_MOUSE 39S ribosomal protein L2, mitochondrial OS=Mus musculus GN=Mrpl2 PE=2 SV=1

 Score =  123 bits (308), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 99/161 (61%), Gaps = 5/161 (3%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPP--LEERVIQIIPSPAPTVRTANLALVGSG 58
           R+ V G+GGG K++   +   R  P  +  P   EE+V+ +   P    R+A++ALV  G
Sbjct: 90  RIRVHGIGGGHKQNYRMIDFLRFRPEKEKAPEPFEEKVVVVRYDP---CRSADIALVAGG 146

Query: 59  DFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAH 118
              + I+ATENMKAGD +  S  I R+ V A+EGDA+P+GALP+G+++  VE  PG GA 
Sbjct: 147 SRKRWIIATENMKAGDTILNSNHIGRMAVAAQEGDAHPLGALPVGTLINNVESEPGRGAQ 206

Query: 119 YARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
           Y RAAG    L+R ++   ++QLPSK ++ V + C A V +
Sbjct: 207 YIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLESCTATVGR 247

Mus musculus (taxid: 10090)

>sp|Q498T4|RM02_RAT 39S ribosomal protein L2, mitochondrial OS=Rattus norvegicus GN=Mrpl2 PE=2 SV=1

 Score =  122 bits (306), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 67/161 (41%), Positives = 99/161 (61%), Gaps = 5/161 (3%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPP--LEERVIQIIPSPAPTVRTANLALVGSG 58
           R+ V G+GGG K++   +   R  P   + P   EE+V+ +   P    R+A++ALV  G
Sbjct: 88  RIRVHGIGGGHKQNYRMIDFLRFRPEKGTEPEPFEEKVVVVRYDP---CRSADIALVAGG 144

Query: 59  DFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAH 118
              + I+ATENMKAGD +  S  I R+ V A+EGDA+P+GALP+G+++  VE  PG GA 
Sbjct: 145 SRKRWIIATENMKAGDTILNSNHIGRMAVAAQEGDAHPLGALPVGTLINNVESEPGRGAQ 204

Query: 119 YARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
           Y RAAG    L+R ++   ++QLPSK ++ V + C A V +
Sbjct: 205 YIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLESCTATVGR 245

Rattus norvegicus (taxid: 10116)

>sp|Q3J8R7|RL2_NITOC 50S ribosomal protein L2 OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=rplB PE=3 SV=1

 Score = 72.8 bits (177), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 85/160 (53%), Gaps = 14/160 (8%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+ V   GGG K  ++ + DFRR   D    +  RV +I   P    R+A++AL+   D 
Sbjct: 48  RITVRHCGGGHKR-LYRIIDFRRDKID----VLGRVKRIEYDPN---RSAHIALINYSDG 99

Query: 61  LK-LILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
            K  I+A + +K GDI+ +    P      ++G+  P+  +P+G++V C+E  PG+GA  
Sbjct: 100 EKRYIIAPKAVKVGDIITSGREAP-----IRDGNCLPLRNIPVGTLVHCIELKPGKGAQI 154

Query: 120 ARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
           AR+AG+SC LV    D  +L+L S     V   C A + +
Sbjct: 155 ARSAGSSCQLVAREGDHAMLRLRSGEIRKVPLECRATIGE 194

One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.

Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) (taxid: 323261)

>sp|B6JET6|RL2_OLICO 50S ribosomal protein L2 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rplB PE=3 SV=1

 Score = 70.5 bits (171), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 14/159 (8%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+ V   GGG K+    + DF+R   D  P   ER ++  P+     RTA +AL+   D 
Sbjct: 48  RITVRFRGGGHKQTYRLI-DFKRTKVD-VPATVER-LEYDPN-----RTAFIALIKYADG 99

Query: 61  -LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
            L  ILA + +  GD +    +     V  K G+A P+G +P+G+IV  VE   G+G   
Sbjct: 100 ELSYILAPQRLAVGDTVVAGSY-----VDVKPGNAMPMGNMPVGTIVHNVEMKIGKGGQM 154

Query: 120 ARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVA 158
           AR+AG    +V   HD V+L+L S  +  V   CMA + 
Sbjct: 155 ARSAGTYAQIVGRDHDYVILRLNSGEQRMVHGRCMATIG 193

One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.

Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) (taxid: 504832)

>sp|Q21M54|RL2_SACD2 50S ribosomal protein L2 OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=rplB PE=3 SV=1

 Score = 70.1 bits (170), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 82/160 (51%), Gaps = 14/160 (8%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+    +GGG K+  + V DFRR    D  P +   ++  P+     RTA +ALV   D 
Sbjct: 48  RITTRHIGGGHKQH-YRVIDFRR--NKDGIPAKVERLEYDPN-----RTAYIALVCYADG 99

Query: 61  -LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
             + I+A + +KAGD++++    P      K G+A P+  +P+GS+V C+E  PG+GA  
Sbjct: 100 ERRYIIAPKGVKAGDVIQSGDAAP-----IKPGNALPLRNIPVGSVVHCIEMKPGKGAQI 154

Query: 120 ARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
           AR+AG S  LV        L+L S     +   C A + +
Sbjct: 155 ARSAGTSVQLVAREGQYCTLRLRSGEMRKILSECRATLGE 194

One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.

Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) (taxid: 203122)

>sp|Q7MPI5|RL2_VIBVY 50S ribosomal protein L2 OS=Vibrio vulnificus (strain YJ016) GN=rplB PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 14/144 (9%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+ V  +GGG K+    V DF+R  T D  P +   ++  P+     R+AN+ALV   D 
Sbjct: 48  RITVRHIGGGHKQHYRVV-DFKR--TKDGIPAKVERLEYDPN-----RSANIALVLYADG 99

Query: 61  -LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
             + I+A + M+AGD++++ +  P      K G+  P+  +P+GS + CVE  PG+GA  
Sbjct: 100 ERRYIIAPKGMQAGDVIQSGVDAP-----IKAGNTLPMRNIPVGSTIHCVELTPGKGAQL 154

Query: 120 ARAAGNSCTLVRTLHDRVVLQLPS 143
           AR+AG    LV      V ++L S
Sbjct: 155 ARSAGAYAQLVARDGSYVTIRLRS 178

One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.

Vibrio vulnificus (strain YJ016) (taxid: 196600)

>sp|Q8DE42|RL2_VIBVU 50S ribosomal protein L2 OS=Vibrio vulnificus (strain CMCP6) GN=rplB PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 50/144 (34%), Positives = 78/144 (54%), Gaps = 14/144 (9%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+ V  +GGG K+    V DF+R  T D  P +   ++  P+     R+AN+ALV   D 
Sbjct: 48  RITVRHIGGGHKQHYRVV-DFKR--TKDGIPAKVERLEYDPN-----RSANIALVLYADG 99

Query: 61  -LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
             + I+A + M+AGD++++ +  P      K G+  P+  +P+GS + CVE  PG+GA  
Sbjct: 100 ERRYIIAPKGMQAGDVIQSGVDAP-----IKAGNTLPMRNIPVGSTIHCVELTPGKGAQL 154

Query: 120 ARAAGNSCTLVRTLHDRVVLQLPS 143
           AR+AG    LV      V ++L S
Sbjct: 155 ARSAGAYAQLVARDGSYVTIRLRS 178

One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.

Vibrio vulnificus (taxid: 672)

>sp|A6W389|RL2_MARMS 50S ribosomal protein L2 OS=Marinomonas sp. (strain MWYL1) GN=rplB PE=3 SV=1

 Score = 67.8 bits (164), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 14/160 (8%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+    +GGG K+    V DFRR     S  +E   ++  P+     R+AN+AL+   D 
Sbjct: 48  RITTRHVGGGHKQHYRMV-DFRRNKDGISAVVER--LEYDPN-----RSANIALIRYADG 99

Query: 61  -LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
             + I+A++ M AG+I+ +    P      K G+  P+  +P+GS V CVE  PG+GA  
Sbjct: 100 ERRYIIASKGMVAGNIVFSGADAP-----IKAGNTLPLQNIPVGSTVHCVELKPGKGAQV 154

Query: 120 ARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
           AR+AG S  LV      V L+L S     V   C A + +
Sbjct: 155 ARSAGASAQLVAREGRYVTLRLRSGEMRKVLTECRATLGE 194

One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome.

Marinomonas sp. (strain MWYL1) (taxid: 400668)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
357626965	297	mitochondrial ribosomal protein L2 [Dana	0.974	0.521	0.559	3e-42
354549505	249	mitochondrial ribosomal protein L2 [Anth	0.974	0.622	0.547	6e-41
242247146	303	39S ribosomal protein L2, mitochondrial	0.981	0.514	0.556	1e-40
195441600	295	GK20336 [Drosophila willistoni] gi|19416	0.974	0.525	0.547	2e-39
195379540	296	GJ14025 [Drosophila virilis] gi|19415569	0.974	0.523	0.534	4e-39
312383182	297	hypothetical protein AND_03848 [Anophele	0.974	0.521	0.522	4e-39
125979819	297	GA20496 [Drosophila pseudoobscura pseudo	0.974	0.521	0.547	7e-39
157117802	297	mitochondrial ribosomal protein L2 [Aede	0.974	0.521	0.528	7e-39
21064523	294	RE45450p [Drosophila melanogaster]	0.968	0.523	0.540	8e-39
201065963	316	FI07257p [Drosophila melanogaster]	0.968	0.487	0.540	9e-39

>gi|357626965|gb|EHJ76838.1| mitochondrial ribosomal protein L2 [Danaus plexippus]

 Score =  176 bits (445), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 89/159 (55%), Positives = 116/159 (72%), Gaps = 4/159 (2%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           RVV  G+GGGIK   HW++  R GPT+  PP EE+VI+II       RT+++ALV  GD 
Sbjct: 77  RVVAKGIGGGIKHKYHWINWVRDGPTE-GPPQEEKVIEIIEC---GCRTSHVALVAVGDK 132

Query: 61  LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYA 120
           LK ILATENMKAGDI+K+S ++PRIPVRA EGDAY +GALP G+IV C+EK PG+G  Y 
Sbjct: 133 LKYILATENMKAGDIIKSSRYLPRIPVRANEGDAYVLGALPTGTIVHCIEKEPGQGGLYI 192

Query: 121 RAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
            AAG   T++R   DR+++Q+PSK   + ++HCMAVV +
Sbjct: 193 HAAGTFGTILRRQDDRIIVQMPSKRLFSFNEHCMAVVGR 231

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|354549505|gb|AER27809.1| mitochondrial ribosomal protein L2 [Antheraea yamamai]

 Score =  172 bits (435), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 113/159 (71%), Gaps = 4/159 (2%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+V  G+GGGIK   HW+  FR GPT+  PP EE+VIQ+I       RTA++ALV  G+ 
Sbjct: 75  RLVAKGIGGGIKHKYHWIDWFRVGPTE-GPPQEEKVIQVIED---GCRTAHIALVAVGNR 130

Query: 61  LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYA 120
           LK ILAT+ MKAGDI+KTS  +PRIPVRA +GDAY +GALP+G+ V CVEK PG+G  Y 
Sbjct: 131 LKYILATDKMKAGDIIKTSRELPRIPVRANDGDAYVLGALPLGTFVHCVEKEPGQGGLYI 190

Query: 121 RAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
            AAG    ++R   +RV++Q+PSK   + D+HCMAVV +
Sbjct: 191 HAAGTYGVIIRKEENRVIVQMPSKRLFSFDQHCMAVVGR 229

Source: Antheraea yamamai

Species: Antheraea yamamai

Genus: Antheraea

Family: Saturniidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242247146|ref|NP_001156286.1| 39S ribosomal protein L2, mitochondrial [Acyrthosiphon pisum] gi|239793641|dbj|BAH72926.1| ACYPI009104 [Acyrthosiphon pisum]

 Score =  171 bits (433), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 89/160 (55%), Positives = 113/160 (70%), Gaps = 4/160 (2%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPT-DDSPPLEERVIQIIPSPAPTVRTANLALVGSGD 59
           RVVV GLGGGIK+  HWV   R GPT +   P  +RV++I+       RTA +ALVG G 
Sbjct: 79  RVVVKGLGGGIKQKYHWVDLKRFGPTGEHDAPRIDRVLEIMDC---GCRTAKVALVGCGT 135

Query: 60  FLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
            LK I+AT NMK GD+L TS +IPRIPV   EGDAYP+GAL  G+ V C+EK PGEGAHY
Sbjct: 136 HLKYIIATVNMKPGDMLVTSGYIPRIPVNPNEGDAYPLGALSKGTKVHCIEKMPGEGAHY 195

Query: 120 ARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
              AG++ T++R + DRV++QLPSK +V++ KHCMA + Q
Sbjct: 196 VMTAGSTATILRQVDDRVIIQLPSKLQVSLSKHCMASIGQ 235

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195441600|ref|XP_002068593.1| GK20336 [Drosophila willistoni] gi|194164678|gb|EDW79579.1| GK20336 [Drosophila willistoni]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 109/159 (68%), Gaps = 4/159 (2%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           RVV  G+GGGIK+   W+   R GPT+ S   EERV++++       RTA +ALV  GD 
Sbjct: 75  RVVAKGIGGGIKQQYRWIKWVRDGPTEGSAQ-EERVVEVLND---GCRTAKVALVAVGDE 130

Query: 61  LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYA 120
           LK ILATENMKAGDILKTS  IPRIPVR  +GDAYP+GALP+G+ + C+EK P +  H  
Sbjct: 131 LKYILATENMKAGDILKTSRVIPRIPVRPNDGDAYPLGALPVGTRIHCLEKNPNQPCHLI 190

Query: 121 RAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
            AAG   T++R   D+VV+QLPSK E A D+ CMA V +
Sbjct: 191 HAAGTFGTILRKFDDKVVVQLPSKREFAFDRTCMATVGR 229

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195379540|ref|XP_002048536.1| GJ14025 [Drosophila virilis] gi|194155694|gb|EDW70878.1| GJ14025 [Drosophila virilis]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 85/159 (53%), Positives = 110/159 (69%), Gaps = 4/159 (2%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+V  G+GGGIK+   W+   R GP++ +P  EERV++++       RTA +ALV  GD 
Sbjct: 76  RMVAKGIGGGIKQQYRWIKWVRDGPSEGAPQ-EERVVELLRD---GCRTAKVALVAVGDE 131

Query: 61  LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYA 120
           LK ILATENM+ GDILKTS  IPRIPVR  EGDAYP+GALP+G+ + C+EK PG+  H  
Sbjct: 132 LKYILATENMREGDILKTSRVIPRIPVRPNEGDAYPLGALPVGTRIHCLEKNPGQPCHLI 191

Query: 121 RAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
            AAG   T++R   D+VV+QLPSK E A D+ CMA V +
Sbjct: 192 HAAGTFGTILRKFDDKVVVQLPSKREFAFDRICMATVGR 230

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312383182|gb|EFR28366.1| hypothetical protein AND_03848 [Anopheles darlingi]

 Score =  166 bits (419), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 83/159 (52%), Positives = 110/159 (69%), Gaps = 4/159 (2%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R++  G+GGGIK   HW+   R GP++ SP +E +VI +I       RTA +ALV  G+ 
Sbjct: 77  RLIAKGIGGGIKHKYHWIKWVRDGPSEGSPQIE-KVIDVIDD---GCRTAKVALVAVGNE 132

Query: 61  LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYA 120
           +K ILATENMK GD++KTS FIPRIPVRA EGDAYP+GAL +G+ + C+EK+PG+  H  
Sbjct: 133 MKYILATENMKPGDLIKTSRFIPRIPVRANEGDAYPLGALQVGTQIHCLEKYPGQACHLI 192

Query: 121 RAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
            AAG+  T++R   D VV+QLPSK E A  + CMA V +
Sbjct: 193 HAAGSYGTILRKFGDLVVVQLPSKQEFAFQQTCMATVGR 231

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125979819|ref|XP_001353942.1| GA20496 [Drosophila pseudoobscura pseudoobscura] gi|54640927|gb|EAL29678.1| GA20496 [Drosophila pseudoobscura pseudoobscura]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 109/159 (68%), Gaps = 4/159 (2%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+V  G+GGGIK+   WV   R GP + +P  EE V++I+       RTA +ALV  GD 
Sbjct: 77  RMVAKGIGGGIKQQYRWVKWVRDGPGEGAP-QEELVVEILHD---GCRTAKVALVAVGDE 132

Query: 61  LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYA 120
           LK ILATENMKAGD+LKTS  IPRIPVR  EGDAYP+GALP+G+ + C+EK PG+  H  
Sbjct: 133 LKYILATENMKAGDVLKTSRVIPRIPVRPNEGDAYPLGALPVGTRIHCLEKNPGQQCHLI 192

Query: 121 RAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
            AAG   T++R   D+VV+QLPSK E A D+ CMA V +
Sbjct: 193 HAAGTFGTILRKFDDKVVVQLPSKREFAFDRICMATVGR 231

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157117802|ref|XP_001658945.1| mitochondrial ribosomal protein L2 [Aedes aegypti] gi|108884612|gb|EAT48837.1| AAEL000210-PA [Aedes aegypti]

 Score =  165 bits (417), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 84/159 (52%), Positives = 108/159 (67%), Gaps = 4/159 (2%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R++  G+GGGIK   HW+   R GP +  PP  E+VI +I       RTA +ALV  GD 
Sbjct: 77  RLIAKGIGGGIKHKYHWIKWVRDGPLE-GPPQIEKVIDVIHD---GCRTAKVALVAVGDE 132

Query: 61  LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYA 120
           LK I+ATENMKAGD++KTS FIPRIPVRA EGDAYP+GAL +G+ + C+EK+PG+  H  
Sbjct: 133 LKYIIATENMKAGDLIKTSRFIPRIPVRANEGDAYPLGALQVGTQIHCLEKYPGQQCHLI 192

Query: 121 RAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
            +AG   T++R   D VV+QLPSK E A  + CMA V +
Sbjct: 193 HSAGTYGTILRKFGDLVVVQLPSKQEFAFHQTCMATVGR 231

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|21064523|gb|AAM29491.1| RE45450p [Drosophila melanogaster]

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 86/159 (54%), Positives = 109/159 (68%), Gaps = 5/159 (3%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+V  G+GGGIK+   WV   R GPT+ +   EE V++++       RTA +ALV  GD 
Sbjct: 75  RLVAKGIGGGIKQQYRWVKWVRDGPTEGA--QEELVLEVLRD---GCRTAKVALVAVGDE 129

Query: 61  LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYA 120
           LK ILATENMKAGDILKTS FIPRIPVR  EGDAYP+GALP+G+ + C+EK PG+  H  
Sbjct: 130 LKYILATENMKAGDILKTSRFIPRIPVRPNEGDAYPLGALPVGTRIHCLEKNPGQMCHLI 189

Query: 121 RAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
            AAG   T++R   ++VV+QLPSK E A  + CMA V +
Sbjct: 190 HAAGTFGTILRKFDEKVVVQLPSKREFAFQRTCMATVGR 228

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|201065963|gb|ACH92391.1| FI07257p [Drosophila melanogaster]

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 86/159 (54%), Positives = 109/159 (68%), Gaps = 5/159 (3%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+V  G+GGGIK+   WV   R GPT+ +   EE V++++       RTA +ALV  GD 
Sbjct: 97  RLVAKGIGGGIKQQYRWVKWVRDGPTEGAQ--EELVLEVLRD---GCRTAKVALVAVGDE 151

Query: 61  LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYA 120
           LK ILATENMKAGDILKTS FIPRIPVR  EGDAYP+GALP+G+ + C+EK PG+  H  
Sbjct: 152 LKYILATENMKAGDILKTSRFIPRIPVRPNEGDAYPLGALPVGTRIHCLEKNPGQMCHLI 211

Query: 121 RAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
            AAG   T++R   ++VV+QLPSK E A  + CMA V +
Sbjct: 212 HAAGTFGTILRKFDEKVVVQLPSKREFAFQRTCMATVGR 250

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	159
FB|FBgn0036135	294	mRpL2 "mitochondrial ribosomal	0.968	0.523	0.540	1.6e-38
ZFIN|ZDB-GENE-050809-12	294	im:6908224 "im:6908224" [Danio	0.974	0.527	0.407	3.9e-28
UNIPROTKB|Q5T653	305	MRPL2 "39S ribosomal protein L	0.981	0.511	0.431	5e-28
UNIPROTKB|E2RCD7	306	MRPL2 "Uncharacterized protein	0.981	0.509	0.434	6.4e-28
UNIPROTKB|Q2TA12	306	MRPL2 "39S ribosomal protein L	0.981	0.509	0.434	1e-27
UNIPROTKB|F1RRN2	306	MRPL2 "Uncharacterized protein	0.981	0.509	0.428	2.2e-27
MGI|MGI:1351622	306	Mrpl2 "mitochondrial ribosomal	0.981	0.509	0.422	2.2e-27
UNIPROTKB|F1NY85	259	MRPL2 "Uncharacterized protein	0.955	0.586	0.421	2.8e-27
RGD|1307147	304	Mrpl2 "mitochondrial ribosomal	0.981	0.513	0.422	4.5e-27
UNIPROTKB|Q498T4	304	Mrpl2 "39S ribosomal protein L	0.981	0.513	0.422	4.5e-27

FB|FBgn0036135 mRpL2 "mitochondrial ribosomal protein L2" [Drosophila melanogaster (taxid:7227)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 86/159 (54%), Positives = 109/159 (68%)

Query:     1 RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
             R+V  G+GGGIK+   WV   R GPT+ +   EE V++++       RTA +ALV  GD 
Sbjct:    75 RLVAKGIGGGIKQQYRWVKWVRDGPTEGAQ--EELVLEVLRDGC---RTAKVALVAVGDE 129

Query:    61 LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYA 120
             LK ILATENMKAGDILKTS FIPRIPVR  EGDAYP+GALP+G+ + C+EK PG+  H  
Sbjct:   130 LKYILATENMKAGDILKTSRFIPRIPVRPNEGDAYPLGALPVGTRIHCLEKNPGQMCHLI 189

Query:   121 RAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
              AAG   T++R   ++VV+QLPSK E A  + CMA V +
Sbjct:   190 HAAGTFGTILRKFDEKVVVQLPSKREFAFQRTCMATVGR 228

GO:0006412 "translation" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISS

ZFIN|ZDB-GENE-050809-12 im:6908224 "im:6908224" [Danio rerio (taxid:7955)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 66/162 (40%), Positives = 107/162 (66%)

Query:     1 RVVVAGLGGGIKEDIHWVHDFRR---GPTDDSPPLEERVIQIIPSPAPTVRTANLALVGS 57
             R+   G+GGG K+  H + DF+R    P  + P + E+V+++   P    R+A++ALV  
Sbjct:    78 RIKTHGIGGGHKQR-HRIIDFQRLRSEPGKEQPVMVEKVLEVRYDPC---RSADIALVAG 133

Query:    58 GDFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGA 117
             G+  + I+A++NM+AGD++++   I R+ V A+EGDA+PVGALP+G+++  +E FPG GA
Sbjct:   134 GNRKRWIIASQNMEAGDLIQSCRGIGRMAVLAQEGDAHPVGALPVGTLIHNLELFPGRGA 193

Query:   118 HYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
              Y RAAG    L+R +    ++QLPSKH++ V + C+A V +
Sbjct:   194 QYIRAAGTCGVLLRKVSGTAIIQLPSKHQIQVLETCVATVGR 235

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q5T653 MRPL2 "39S ribosomal protein L2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 69/160 (43%), Positives = 101/160 (63%)

Query:     1 RVVVAGLGGGIKEDIHWVHDFRRGPTDD-SPPLEERVIQIIPSPAPTVRTANLALVGSGD 59
             R+ V G+GGG K+    +   R  P +  S P EE+VIQ+   P    R+A++ALV  G 
Sbjct:    90 RIRVHGIGGGHKQRYRMIDFLRFRPEETKSGPFEEKVIQVRYDPC---RSADIALVAGGS 146

Query:    60 FLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
               + I+ATENM+AGD +  S  I R+ V A+EGDA+P+GALP+G+++  VE  PG GA Y
Sbjct:   147 RKRWIIATENMQAGDTILNSNHIGRMAVAAREGDAHPLGALPVGTLINNVESEPGRGAQY 206

Query:   120 ARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
              RAAG    L+R ++   ++QLPSK ++ V + C+A V +
Sbjct:   207 IRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETCVATVGR 246

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|E2RCD7 MRPL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 70/161 (43%), Positives = 101/161 (62%)

Query:     1 RVVVAGLGGGIKEDIHWVHDFRRGPT-DDSP-PLEERVIQIIPSPAPTVRTANLALVGSG 58
             R+ V G+GGG K+    +   R  P  +  P P EE+VI +   P    R+A++ALV  G
Sbjct:    90 RIQVHGIGGGHKQRYRMIDFLRFRPELETKPGPFEEKVIMVRYDPC---RSADIALVAGG 146

Query:    59 DFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAH 118
                + I+ATENM+AGDI+  S  I R+ V A+EGDA+P+GALP+G+++  VE  PG GA 
Sbjct:   147 SRKRWIVATENMQAGDIILNSDHIGRMAVAAREGDAHPLGALPVGTLINNVESEPGRGAQ 206

Query:   119 YARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
             Y RAAG    L+R ++   ++QLPSK ++ V + CMA V +
Sbjct:   207 YIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETCMATVGR 247

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q2TA12 MRPL2 "39S ribosomal protein L2, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 70/161 (43%), Positives = 101/161 (62%)

Query:     1 RVVVAGLGGGIKEDIHWVHDFRRGPTDDS-P-PLEERVIQIIPSPAPTVRTANLALVGSG 58
             R+ V G+GGG K+    +   R  P  +S P P EE+VI +   P    R+A++ALV  G
Sbjct:    90 RIQVHGIGGGHKQRYRMIDFLRFRPEQESKPGPFEEKVIVVRYDPC---RSADIALVAGG 146

Query:    59 DFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAH 118
             +  + I+ATENMKAGD +  S  I R+ V A+EGDA+P+GALP+G+++  VE  PG GA 
Sbjct:   147 NRKRWIIATENMKAGDTILNSDHIGRMAVAAREGDAHPLGALPVGTLINNVESEPGRGAQ 206

Query:   119 YARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
             Y RAAG    L+R ++   ++QLPSK ++ V + C A V +
Sbjct:   207 YIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETCTATVGR 247

GO:0005739 "mitochondrion" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|F1RRN2 MRPL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 69/161 (42%), Positives = 102/161 (63%)

Query:     1 RVVVAGLGGGIKEDIHWVHDFRRGPTDDS-P-PLEERVIQIIPSPAPTVRTANLALVGSG 58
             ++ V G+GGG K+    +   R  P  +S P P EE+VI +   P    R+A++ALV  G
Sbjct:    90 QIQVHGIGGGHKQRYRMIDFLRFRPEHESKPGPFEEKVIAVRYDPC---RSADIALVAGG 146

Query:    59 DFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAH 118
             +  + I+ATENMKAGD +  S  I R+ V A+EGDA+P+GALP+G+++  VE  PG GA 
Sbjct:   147 NRKRWIIATENMKAGDTVLNSDHIGRMAVAAREGDAHPLGALPVGTLINNVESEPGRGAQ 206

Query:   119 YARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
             Y RAAG    L+R ++   ++QLPSK ++ V + C+A V +
Sbjct:   207 YIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETCIATVGR 247

GO:0005739 "mitochondrion" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:1351622 Mrpl2 "mitochondrial ribosomal protein L2" [Mus musculus (taxid:10090)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 68/161 (42%), Positives = 101/161 (62%)

Query:     1 RVVVAGLGGGIKEDIHWVHDFRRGPTDD-SP-PLEERVIQIIPSPAPTVRTANLALVGSG 58
             R+ V G+GGG K++   +   R  P  + +P P EE+V+ +   P    R+A++ALV  G
Sbjct:    90 RIRVHGIGGGHKQNYRMIDFLRFRPEKEKAPEPFEEKVVVVRYDPC---RSADIALVAGG 146

Query:    59 DFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAH 118
                + I+ATENMKAGD +  S  I R+ V A+EGDA+P+GALP+G+++  VE  PG GA 
Sbjct:   147 SRKRWIIATENMKAGDTILNSNHIGRMAVAAQEGDAHPLGALPVGTLINNVESEPGRGAQ 206

Query:   119 YARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
             Y RAAG    L+R ++   ++QLPSK ++ V + C A V +
Sbjct:   207 YIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLESCTATVGR 247

GO:0003735 "structural constituent of ribosome" evidence=ISA

GO:0005622 "intracellular" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005762 "mitochondrial large ribosomal subunit" evidence=ISA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=ISA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1NY85 MRPL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 67/159 (42%), Positives = 101/159 (63%)

Query:     1 RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
             R+ V G+GGG K     + DF+R   ++     E+VI +   P    R+A++ALV  G+ 
Sbjct:    49 RIRVRGIGGGHKRRYRMI-DFQRLRYNEGT---EKVIAVRYDPC---RSADIALVAGGNQ 101

Query:    61 LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYA 120
              + I+ATENM+ GD++K S  I R+ V A EGDAYP+GALP+G+++C +E  PG+GA Y 
Sbjct:   102 KRWIIATENMQPGDLIKNSSHIGRMAVLANEGDAYPLGALPVGTLICNLESHPGKGAQYI 161

Query:   121 RAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
             RAAG    L+R ++   ++QLPSK  + V + C+A V +
Sbjct:   162 RAAGTCGVLLRKVNGTAIVQLPSKRHMQVLETCVATVGR 200

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0015934 "large ribosomal subunit" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|1307147 Mrpl2 "mitochondrial ribosomal protein L2" [Rattus norvegicus (taxid:10116)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 68/161 (42%), Positives = 100/161 (62%)

Query:     1 RVVVAGLGGGIKEDIHWVHDFRRGPTDDS-P-PLEERVIQIIPSPAPTVRTANLALVGSG 58
             R+ V G+GGG K++   +   R  P   + P P EE+V+ +   P    R+A++ALV  G
Sbjct:    88 RIRVHGIGGGHKQNYRMIDFLRFRPEKGTEPEPFEEKVVVVRYDPC---RSADIALVAGG 144

Query:    59 DFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAH 118
                + I+ATENMKAGD +  S  I R+ V A+EGDA+P+GALP+G+++  VE  PG GA 
Sbjct:   145 SRKRWIIATENMKAGDTILNSNHIGRMAVAAQEGDAHPLGALPVGTLINNVESEPGRGAQ 204

Query:   119 YARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
             Y RAAG    L+R ++   ++QLPSK ++ V + C A V +
Sbjct:   205 YIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLESCTATVGR 245

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q498T4 Mrpl2 "39S ribosomal protein L2, mitochondrial" [Rattus norvegicus (taxid:10116)]

 Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
 Identities = 68/161 (42%), Positives = 100/161 (62%)

Query:     1 RVVVAGLGGGIKEDIHWVHDFRRGPTDDS-P-PLEERVIQIIPSPAPTVRTANLALVGSG 58
             R+ V G+GGG K++   +   R  P   + P P EE+V+ +   P    R+A++ALV  G
Sbjct:    88 RIRVHGIGGGHKQNYRMIDFLRFRPEKGTEPEPFEEKVVVVRYDPC---RSADIALVAGG 144

Query:    59 DFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAH 118
                + I+ATENMKAGD +  S  I R+ V A+EGDA+P+GALP+G+++  VE  PG GA 
Sbjct:   145 SRKRWIIATENMKAGDTILNSNHIGRMAVAAQEGDAHPLGALPVGTLINNVESEPGRGAQ 204

Query:   119 YARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
             Y RAAG    L+R ++   ++QLPSK ++ V + C A V +
Sbjct:   205 YIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLESCTATVGR 245

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	159
COG0090	275	COG0090, RplB, Ribosomal protein L2 [Translation,	2e-19
pfam03947	130	pfam03947, Ribosomal_L2_C, Ribosomal Proteins L2,	5e-19
PRK09612	238	PRK09612, rpl2p, 50S ribosomal protein L2P; Valida	2e-16
PRK09374	276	PRK09374, rplB, 50S ribosomal protein L2; Validate	3e-14
TIGR01171	273	TIGR01171, rplB_bact, ribosomal protein L2, bacter	4e-12
CHL00052	273	CHL00052, rpl2, ribosomal protein L2	1e-11
PTZ00031	317	PTZ00031, PTZ00031, ribosomal protein L2; Provisio	2e-11
pfam00181	77	pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RN	5e-07
PTZ00180	260	PTZ00180, PTZ00180, 60S ribosomal protein L8; Prov	6e-07

>gnl|CDD|223168 COG0090, RplB, Ribosomal protein L2 [Translation, ribosomal structure and biogenesis]

 Score = 81.9 bits (203), Expect = 2e-19
 Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 14/151 (9%)

Query: 8   GGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLK-LILA 66
           GGG K     + DF+R        +  +V  I   P    R+A +ALV   D  K  ILA
Sbjct: 55  GGGHKRRYRLI-DFKRNKDG----IPGKVEDIEYDPN---RSAPIALVVYEDGEKRYILA 106

Query: 67  TENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNS 126
            E +K GD++          +  K G+A P+G +P G+IV  VE  PG+G   AR+AG  
Sbjct: 107 PEGLKVGDVI---ESGKDADI--KPGNALPLGNIPEGTIVHNVELKPGDGGQLARSAGTY 161

Query: 127 CTLVRTLHDRVVLQLPSKHEVAVDKHCMAVV 157
             +V    + V+++LPS     V   C A +
Sbjct: 162 AQVVGKEGNYVIVRLPSGEMRKVLSECRATI 192

Length = 275

>gnl|CDD|202823 pfam03947, Ribosomal_L2_C, Ribosomal Proteins L2, C-terminal domain

 Score = 77.2 bits (191), Expect = 5e-19
 Identities = 22/70 (31%), Positives = 37/70 (52%)

Query: 90  KEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAV 149
           K G+A P+  +P+G+++  +E  PG+G   AR+AG    ++      V L+LPS     V
Sbjct: 2   KIGNALPLKNIPIGTVIHNIELIPGKGGQLARSAGTYAQIIAKEGKYVTLKLPSGEVRLV 61

Query: 150 DKHCMAVVAQ 159
             +C A +  
Sbjct: 62  SSNCRATIGV 71

Length = 130

>gnl|CDD|236589 PRK09612, rpl2p, 50S ribosomal protein L2P; Validated

 Score = 73.3 bits (181), Expect = 2e-16
 Identities = 40/134 (29%), Positives = 65/134 (48%), Gaps = 9/134 (6%)

Query: 25  PTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLK-LILATENMKAGDILKTSMFIP 83
           P D    L  +V+ I+  P    R A +A V   +  + LILA E +  G  ++      
Sbjct: 32  PLDKDGTLRGKVVDILHDPG---RNAPVAKVKFENGEEFLILAPEGLYVGQEIEIG---- 84

Query: 84  RIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPS 143
                 K G+  P+G +P G+ VC +E  PG+G  +AR++G    +V    D+V++QLPS
Sbjct: 85  -PSAEIKPGNTLPLGEIPEGTPVCNIESRPGDGGKFARSSGTYALVVGHEGDKVIVQLPS 143

Query: 144 KHEVAVDKHCMAVV 157
                ++  C A +
Sbjct: 144 GKIKELNPRCRATI 157

Length = 238

>gnl|CDD|236488 PRK09374, rplB, 50S ribosomal protein L2; Validated

 Score = 67.8 bits (167), Expect = 3e-14
 Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 8/114 (7%)

Query: 48  RTANLALVGSGDFLK-LILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIV 106
           R+A +AL+   D  K  ILA + +K GD + +    P   ++   G+A P+  +P+G+ V
Sbjct: 87  RSARIALLHYADGEKRYILAPKGLKVGDTVVSG---PDADIKP--GNALPLRNIPVGTTV 141

Query: 107 CCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEV-AVDKHCMAVVAQ 159
             +E  PG+G   AR+AG S  LV        L+LPS  EV  V   C A + +
Sbjct: 142 HNIELKPGKGGQLARSAGTSAQLVAKEGKYATLRLPSG-EVRKVLAECRATIGE 194

Length = 276

>gnl|CDD|162234 TIGR01171, rplB_bact, ribosomal protein L2, bacterial/organellar

 Score = 61.9 bits (151), Expect = 4e-12
 Identities = 49/153 (32%), Positives = 77/153 (50%), Gaps = 14/153 (9%)

Query: 8   GGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLK-LILA 66
           GGG K  ++ + DF+R    +   +  +V  I   P    R+A +AL+   D  K  ILA
Sbjct: 53  GGGHKR-LYRIIDFKR----NKDGIPAKVAAIEYDPN---RSARIALLHYADGEKRYILA 104

Query: 67  TENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNS 126
            + +K GD +   +  P  P+  K G+A P+  +P+G+ V  +E  PG+G   AR+AG S
Sbjct: 105 PKGLKVGDTV---ISGPEAPI--KPGNALPLRNIPVGTTVHNIELKPGKGGQLARSAGTS 159

Query: 127 CTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
             ++      V L+LPS     V K C A + +
Sbjct: 160 AQILAKEGGYVTLRLPSGEMRMVLKECRATIGE 192

This model distinguishes bacterial and organellar ribosomal protein L2 from its counterparts in the archaea nad in the eukaryotic cytosol. Plant mitochondrial examples tend to have long, variable inserts [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 273

>gnl|CDD|176993 CHL00052, rpl2, ribosomal protein L2

 Score = 60.3 bits (147), Expect = 1e-11
 Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 13/141 (9%)

Query: 20  DFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLK-LILATENMKAGDILKT 78
           DFRR   D    +  R++ I   P    R A + L+  GD  K  IL    +K GD + +
Sbjct: 64  DFRRNKKD----IYGRIVTIEYDPN---RNAYICLIHYGDGEKRYILHPRGLKIGDTIVS 116

Query: 79  SMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVV 138
                  P+  K G+A P+  +P+G+ +  +E  PG+G   ARAAG    L+        
Sbjct: 117 G---TEAPI--KIGNALPLTNIPLGTAIHNIEITPGKGGQLARAAGAVAKLIAKEGKSAT 171

Query: 139 LQLPSKHEVAVDKHCMAVVAQ 159
           L+LPS     + K+C A + Q
Sbjct: 172 LKLPSGEVRLISKNCSATIGQ 192

Length = 273

>gnl|CDD|173329 PTZ00031, PTZ00031, ribosomal protein L2; Provisional

 Score = 60.6 bits (147), Expect = 2e-11
 Identities = 47/160 (29%), Positives = 73/160 (45%), Gaps = 14/160 (8%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD- 59
           R+     GGG  + + ++ DF+R   D    +   V++I   P+   R+A++AL+   D 
Sbjct: 79  RITTRHRGGGHVQRLRFI-DFKRSRKD----IYSTVLRIEYDPS---RSAHIALLQYEDG 130

Query: 60  FLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
            L  ILA   ++ GD +  S +    P     G++ P+  +P+GSIV  VE  PG G   
Sbjct: 131 VLSYILAPLLLRPGDKIIASKYANINP-----GNSLPLRNIPVGSIVHNVEMRPGAGGQI 185

Query: 120 ARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
            RA G   T+V        L+L S         C A + Q
Sbjct: 186 IRAGGTYATVVSKDEQFATLKLKSTEIRKFPLDCWATIGQ 225

Length = 317

>gnl|CDD|109247 pfam00181, Ribosomal_L2, Ribosomal Proteins L2, RNA binding domain

 Score = 44.5 bits (106), Expect = 5e-07
 Identities = 27/79 (34%), Positives = 40/79 (50%), Gaps = 9/79 (11%)

Query: 1  RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
          R+ V   GGG K     + DF+R   +    ++ +VI I   P    R+A +ALV   D 
Sbjct: 7  RITVRHRGGGHKRLYRLI-DFKRNKGN----IKGKVIDIEYDPN---RSAPIALVKYEDG 58

Query: 61 LK-LILATENMKAGDILKT 78
           K  ILA E +K GD +++
Sbjct: 59 EKRYILAPEGLKVGDTIES 77

Length = 77

>gnl|CDD|173464 PTZ00180, PTZ00180, 60S ribosomal protein L8; Provisional

 Score = 47.0 bits (112), Expect = 6e-07
 Identities = 23/68 (33%), Positives = 38/68 (55%), Gaps = 2/68 (2%)

Query: 92  GDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHD--RVVLQLPSKHEVAV 149
           G+  P+G +P G+IVC VE+ PG+    ARA+G   T++    D  +  ++LPS  +  V
Sbjct: 99  GNVLPLGQIPEGTIVCNVEEKPGDRGTLARASGCYATIIGHSDDGGKTRIRLPSGQKKTV 158

Query: 150 DKHCMAVV 157
                A++
Sbjct: 159 SSLSRAMI 166

Length = 260

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	159
2ftc_B	136	Structural Model For The Large Subunit Of The Mamma		2e-24
3fik_C	271	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		4e-10
3e1b_N	270	Structure Of The 50s Subunit Of E. Coli Ribosome In		4e-10
2j28_C	267	Model Of E. Coli Srp Bound To 70s Rncs Length = 267		4e-10
2aw4_C	273	Crystal Structure Of The Bacterial Ribosome From Es		4e-10
1p85_A	272	Real Space Refined Coordinates Of The 50s Subunit F		4e-10
2gya_A	227	Structure Of The 50s Subunit Of A Pre-Translocation		6e-10
1nwx_A	274	Complex Of The Large Ribosomal Subunit From Deinoco		1e-08
1nkw_A	275	Crystal Structure Of The Large Ribosomal Subunit Fr		1e-08
1pnu_A	270	Crystal Structure Of A Streptomycin Dependent Ribos		1e-08
1s72_A	240	Refined Crystal Structure Of The Haloarcula Marismo		2e-08
3g4s_A	237	Co-Crystal Structure Of Tiamulin Bound To The Large		2e-08
2otl_A	239	Girodazole Bound To The Large Subunit Of Haloarcula		2e-08
1ffk_A	239	Crystal Structure Of The Large Ribosomal Subunit Fr		2e-08
3ow2_A	237	Crystal Structure Of Enhanced Macrolide Bound To 50		2e-08
3fin_D	272	T. Thermophilus 70s Ribosome In Complex With Mrna,		5e-08
3j21_B	239	Promiscuous Behavior Of Proteins In Archaeal Riboso		5e-08
3pyo_C	271	Crystal Structure Of A Complex Containing Domain 3		5e-08
2j01_D	276	Structure Of The Thermus Thermophilus 70s Ribosome		6e-08
3mrz_C	275	Recognition Of The Amber Stop Codon By Release Fact		6e-08
3bbo_E	269	Homology Model For The Spinach Chloroplast 50s Subu		8e-08
1rl2_A	137	Ribosomal Protein L2 Rna-Binding Domain From Bacill		1e-07
487d_I	135	Seven Ribosomal Proteins Fitted To A Cryo-Electron		2e-07
2b66_D	173	50s Ribosomal Subunit From A Crystal Structure Of R		4e-07
1giy_D	178	Crystal Structure Of The Ribosome At 5.5 A Resoluti		4e-07
2zkr_a	257	Structure Of A Mammalian Ribosomal 60s Subunit With		2e-06
3zf7_e	260	High-resolution Cryo-electron Microscopy Structure		1e-04

>pdb|2FTC|B Chain B, Structural Model For The Large Subunit Of The Mammalian Mitochondrial Ribosome Length = 136

Iteration: 1
 Score =  107 bits (268), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 56/124 (45%), Positives = 82/124 (66%), Gaps = 3/124 (2%)
Query: 36  VIQIIPSPAPTVRTANLALVGSGDFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAY 95
           VIQ+   P    R+A++ALV  G   + I+ATENM+AGD +  S  I R+ V A+EGDA+
Sbjct: 1   VIQVRYDPC---RSADIALVAGGSRKRWIIATENMQAGDTILNSNHIGRMAVAAREGDAH 57
Query: 96  PVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMA 155
           P+GALP+G+++  VE  PG GA Y RAAG    L+R ++   ++QLPSK ++ V + C+A
Sbjct: 58  PLGALPVGTLINNVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETCVA 117
Query: 156 VVAQ 159
            V +
Sbjct: 118 TVGR 121

>pdb|3FIK|C Chain C, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 271

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+    +GGG K+    V DF+R   D  P + ER ++  P+     R+AN+ALV   D 
Sbjct: 47  RITTRHIGGGHKQAYRIV-DFKRN-KDGIPAVVER-LEYDPN-----RSANIALVLYKDG 98
Query: 61  -LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
             + ILA + +KAGD +++      +    K G+  P+  +P+GS V  VE  PG+G   
Sbjct: 99  ERRYILAPKGLKAGDQIQSG-----VDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQL 153
Query: 120 ARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
           AR+AG    +V      V L+L S     V+  C A + +
Sbjct: 154 ARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGE 193

>pdb|3E1B|N Chain N, Structure Of The 50s Subunit Of E. Coli Ribosome In Pre-Accommodation State Length = 270

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+    +GGG K+    V DF+R   D  P + ER ++  P+     R+AN+ALV   D 
Sbjct: 48  RITTRHIGGGHKQAYRIV-DFKRN-KDGIPAVVER-LEYDPN-----RSANIALVLYKDG 99
Query: 61  -LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
             + ILA + +KAGD +++      +    K G+  P+  +P+GS V  VE  PG+G   
Sbjct: 100 ERRYILAPKGLKAGDQIQSG-----VDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQL 154
Query: 120 ARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
           AR+AG    +V      V L+L S     V+  C A + +
Sbjct: 155 ARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGE 194

>pdb|2J28|C Chain C, Model Of E. Coli Srp Bound To 70s Rncs Length = 267

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+    +GGG K+    V DF+R   D  P + ER ++  P+     R+AN+ALV   D 
Sbjct: 45  RITTRHIGGGHKQAYRIV-DFKRN-KDGIPAVVER-LEYDPN-----RSANIALVLYKDG 96
Query: 61  -LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
             + ILA + +KAGD +++      +    K G+  P+  +P+GS V  VE  PG+G   
Sbjct: 97  ERRYILAPKGLKAGDQIQSG-----VDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQL 151
Query: 120 ARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
           AR+AG    +V      V L+L S     V+  C A + +
Sbjct: 152 ARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGE 191

>pdb|2AW4|C Chain C, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli At 3.5 A Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 273

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+    +GGG K+    V DF+R   D  P + ER ++  P+     R+AN+ALV   D 
Sbjct: 48  RITTRHIGGGHKQAYRIV-DFKRN-KDGIPAVVER-LEYDPN-----RSANIALVLYKDG 99
Query: 61  -LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
             + ILA + +KAGD +++      +    K G+  P+  +P+GS V  VE  PG+G   
Sbjct: 100 ERRYILAPKGLKAGDQIQSG-----VDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQL 154
Query: 120 ARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
           AR+AG    +V      V L+L S     V+  C A + +
Sbjct: 155 ARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGE 194

>pdb|1P85|A Chain A, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 272

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+    +GGG K+    V DF+R   D  P + ER ++  P+     R+AN+ALV   D 
Sbjct: 47  RITTRHIGGGHKQAYRIV-DFKRN-KDGIPAVVER-LEYDPN-----RSANIALVLYKDG 98
Query: 61  -LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
             + ILA + +KAGD +++      +    K G+  P+  +P+GS V  VE  PG+G   
Sbjct: 99  ERRYILAPKGLKAGDQIQSG-----VDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQL 153
Query: 120 ARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
           AR+AG    +V      V L+L S     V+  C A + +
Sbjct: 154 ARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGE 193

>pdb|2GYA|A Chain A, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 227

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/160 (32%), Positives = 80/160 (50%), Gaps = 14/160 (8%)
Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+    +GGG K+    V DF+R   D  P + ER ++  P+     R+AN+ALV   D 
Sbjct: 10  RITTRHIGGGHKQAYRIV-DFKRN-KDGIPAVVER-LEYDPN-----RSANIALVLYKDG 61
Query: 61  -LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
             + ILA + +KAGD +++      +    K G+  P+  +P+GS V  VE  PG+G   
Sbjct: 62  ERRYILAPKGLKAGDQIQSG-----VDAAIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQL 116
Query: 120 ARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
           AR+AG    +V      V L+L S     V+  C A + +
Sbjct: 117 ARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGE 156

>pdb|1NWX|A Chain A, Complex Of The Large Ribosomal Subunit From Deinococcus Radiodurans With Abt-773 Length = 274

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+    +GGG K  ++ + DF+R    D   +  +V  I   P    R+A +AL+   D 
Sbjct: 47  RITSRFIGGGHKR-LYRIIDFKR---RDKSGVNAKVAAIEYDPN---RSARIALLHYADG 99
Query: 61  LK-LILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
            K  ILA E +  G  +             K G+A P+  +P+G++V  +E  PG+GA  
Sbjct: 100 EKRYILAPEGLTVGATVNAGP-----EAEPKLGNALPLRFVPVGAVVHALELVPGKGAQL 154
Query: 120 ARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVA 158
           AR+AG S  +     D V+++LPS     V   C A + 
Sbjct: 155 ARSAGTSVQVQGKESDYVIVRLPSGELRRVHSECYATIG 193

>pdb|1NKW|A Chain A, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 275

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+    +GGG K  ++ + DF+R    D   +  +V  I   P    R+A +AL+   D 
Sbjct: 48  RITSRFIGGGHKR-LYRIIDFKR---RDKSGVNAKVAAIEYDPN---RSARIALLHYADG 100
Query: 61  LK-LILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
            K  ILA E +  G  +             K G+A P+  +P+G++V  +E  PG+GA  
Sbjct: 101 EKRYILAPEGLTVGATVNAGP-----EAEPKLGNALPLRFVPVGAVVHALELVPGKGAQL 155
Query: 120 ARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVA 158
           AR+AG S  +     D V+++LPS     V   C A + 
Sbjct: 156 ARSAGTSVQVQGKESDYVIVRLPSGELRRVHSECYATIG 194

>pdb|1PNU|A Chain A, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 270

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 48/159 (30%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+    +GGG K  ++ + DF+R    D   +  +V  I   P    R+A +AL+   D 
Sbjct: 45  RITSRFIGGGHKR-LYRIIDFKR---RDKSGVNAKVAAIEYDPN---RSARIALLHYADG 97
Query: 61  LK-LILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHY 119
            K  ILA E +  G  +             K G+A P+  +P+G++V  +E  PG+GA  
Sbjct: 98  EKRYILAPEGLTVGATVNAGP-----EAEPKLGNALPLRFVPVGAVVHALELVPGKGAQL 152
Query: 120 ARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVA 158
           AR+AG S  +     D V+++LPS     V   C A + 
Sbjct: 153 ARSAGTSVQVQGKESDYVIVRLPSGELRRVHSECYATIG 191

>pdb|1S72|A Chain A, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 240

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 36  VIQIIPSPAPTVRTANLALVGSGDF-LKLILATENMKAGDILKTSMFIPRIPVRAKEGDA 94
           V+ I   PA   R+A +A V   D   +LILA E +  GD L+  +     P     G+ 
Sbjct: 43  VVDIEHDPA---RSAPVAAVEFEDGDRRLILAPEGVGVGDELQVGVSAEIAP-----GNT 94
Query: 95  YPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDR--VVLQLPSKHEVAVDKH 152
            P+  +P G  VC VE  PG+G  +ARA+G +  L+   HDR   V++LPS     +D  
Sbjct: 95  LPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLL--THDRNVAVVKLPSGEMKRLDPQ 152
Query: 153 CMAVVA 158
           C A + 
Sbjct: 153 CRATIG 158

>pdb|3G4S|A Chain A, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 237

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 36  VIQIIPSPAPTVRTANLALVGSGDF-LKLILATENMKAGDILKTSMFIPRIPVRAKEGDA 94
           V+ I   PA   R+A +A V   D   +LILA E +  GD L+  +     P     G+ 
Sbjct: 42  VVDIEHDPA---RSAPVAAVEFEDGDRRLILAPEGVGVGDELQVGVSAEIAP-----GNT 93
Query: 95  YPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDR--VVLQLPSKHEVAVDKH 152
            P+  +P G  VC VE  PG+G  +ARA+G +  L+   HDR   V++LPS     +D  
Sbjct: 94  LPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLL--THDRNVAVVKLPSGEMKRLDPQ 151
Query: 153 CMAVVA 158
           C A + 
Sbjct: 152 CRATIG 157

>pdb|2OTL|A Chain A, Girodazole Bound To The Large Subunit Of Haloarcula Marismortui Length = 239

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 36  VIQIIPSPAPTVRTANLALVGSGDF-LKLILATENMKAGDILKTSMFIPRIPVRAKEGDA 94
           V+ I   PA   R+A +A V   D   +LILA E +  GD L+  +     P     G+ 
Sbjct: 42  VVDIEHDPA---RSAPVAAVEFEDGDRRLILAPEGVGVGDELQVGVSAEIAP-----GNT 93
Query: 95  YPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDR--VVLQLPSKHEVAVDKH 152
            P+  +P G  VC VE  PG+G  +ARA+G +  L+   HDR   V++LPS     +D  
Sbjct: 94  LPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLL--THDRNVAVVKLPSGEMKRLDPQ 151
Query: 153 CMAVVA 158
           C A + 
Sbjct: 152 CRATIG 157

>pdb|1FFK|A Chain A, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 239

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 36  VIQIIPSPAPTVRTANLALVGSGDF-LKLILATENMKAGDILKTSMFIPRIPVRAKEGDA 94
           V+ I   PA   R+A +A V   D   +LILA E +  GD L+  +     P     G+ 
Sbjct: 42  VVDIEHDPA---RSAPVAAVEFEDGDRRLILAPEGVGVGDELQVGVDAEIAP-----GNT 93
Query: 95  YPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDR--VVLQLPSKHEVAVDKH 152
            P+  +P G  VC VE  PG+G  +ARA+G +  L+   HDR   V++LPS     +D  
Sbjct: 94  LPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLL--THDRNVAVVKLPSGEMKRLDPQ 151
Query: 153 CMAVVA 158
           C A + 
Sbjct: 152 CRATIG 157

>pdb|3OW2|A Chain A, Crystal Structure Of Enhanced Macrolide Bound To 50s Ribosomal Subunit Length = 237

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 63/126 (50%), Gaps = 13/126 (10%)
Query: 36  VIQIIPSPAPTVRTANLALVGSGDF-LKLILATENMKAGDILKTSMFIPRIPVRAKEGDA 94
           V+ I   PA   R+A +A V   D   +LILA E +  GD L+  +     P     G+ 
Sbjct: 42  VVDIEHDPA---RSAPVAAVEFEDGDRRLILAPEGVGVGDELQVGVDAEIAP-----GNT 93
Query: 95  YPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDR--VVLQLPSKHEVAVDKH 152
            P+  +P G  VC VE  PG+G  +ARA+G +  L+   HDR   V++LPS     +D  
Sbjct: 94  LPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLL--THDRNVAVVKLPSGEMKRLDPQ 151
Query: 153 CMAVVA 158
           C A + 
Sbjct: 152 CRATIG 157

>pdb|3FIN|D Chain D, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 50s Subunit. Length = 272

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+ V   GGG K  ++ + DF+R    D   +  +V  I   P  + R A L  V     
Sbjct: 47  RITVRFRGGGHKR-LYRIIDFKRW---DKVGIPAKVAAIEYDPNRSARIALLHYVDGEK- 101
Query: 61  LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYA 120
            + I+A + ++ G  +      P  P++   G+A P+  +P+G++V  VE  P +GA  A
Sbjct: 102 -RYIIAPDGLQVGQQVVAG---PDAPIQV--GNALPLRFIPVGTVVHAVELEPKKGAKLA 155
Query: 121 RAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVA 158
           RAAG S  +     D V+L+LPS     V   C A V 
Sbjct: 156 RAAGTSAQIQGREGDYVILRLPSGELRKVHGECYATVG 193

>pdb|3J21|B Chain B, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 239

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 8/113 (7%)
Query: 48  RTANLALVGSGDFL-KLILATENMKAGDILKTSMFI-PRIPVRAKEGDAYPVGALPMGSI 105
           RTA +A V   + + KLI+A E +  G      ++I P  P+    G+  P+  +P G+ 
Sbjct: 54  RTAPVARVKFENGIEKLIIAPEGLLVGQ----EIYIGPDAPIAV--GNTLPLAKIPEGTY 107
Query: 106 VCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVA 158
           V  +E  PG+G  Y RA G    +V    D+V++QLPS    A +  C A + 
Sbjct: 108 VYNIEGIPGDGGKYVRAGGTYALVVSREPDKVIVQLPSGELKAFNPMCRATIG 160

>pdb|3PYO|C Chain C, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 271

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+ V   GGG K  ++ + DF+R    D   +  +V  I   P  + R A L  V     
Sbjct: 47  RITVRFRGGGHKR-LYRIIDFKRW---DKVGIPAKVAAIEYDPNRSARIALLHYVDGEK- 101
Query: 61  LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYA 120
            + I+A + ++ G  +      P  P++   G+A P+  +P+G++V  VE  P +GA  A
Sbjct: 102 -RYIIAPDGLQVGQQVVAG---PDAPIQV--GNALPLRFIPVGTVVHAVELEPKKGAKLA 155
Query: 121 RAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVA 158
           RAAG S  +     D V+L+LPS     V   C A V 
Sbjct: 156 RAAGTSAQIQGREGDYVILRLPSGELRKVHGECYATVG 193

>pdb|2J01|D Chain D, Structure Of The Thermus Thermophilus 70s Ribosome Complexed With Mrna, Trna And Paromomycin (Part 2 Of 4). This File Contains The 50s Subunit From Molecule I. Length = 276

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+ V   GGG K  ++ + DF+R    D   +  +V  I   P  + R A L  V     
Sbjct: 48  RITVRFRGGGHKR-LYRIIDFKRW---DKVGIPAKVAAIEYDPNRSARIALLHYVDGEK- 102
Query: 61  LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYA 120
            + I+A + ++ G  +      P  P++   G+A P+  +P+G++V  VE  P +GA  A
Sbjct: 103 -RYIIAPDGLQVGQQVVAG---PDAPIQV--GNALPLRFIPVGTVVHAVELEPKKGAKLA 156
Query: 121 RAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVA 158
           RAAG S  +     D V+L+LPS     V   C A V 
Sbjct: 157 RAAGTSAQIQGREGDYVILRLPSGELRKVHGECYATVG 194

>pdb|3MRZ|C Chain C, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 275

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 49/158 (31%), Positives = 75/158 (47%), Gaps = 11/158 (6%)
Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+ V   GGG K  ++ + DF+R    D   +  +V  I   P  + R A L  V     
Sbjct: 47  RITVRFRGGGHKR-LYRIIDFKRW---DKVGIPAKVAAIEYDPNRSARIALLHYVDGEK- 101
Query: 61  LKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYA 120
            + I+A + ++ G  +      P  P++   G+A P+  +P+G++V  VE  P +GA  A
Sbjct: 102 -RYIIAPDGLQVGQQVVAG---PDAPIQV--GNALPLRFIPVGTVVHAVELEPKKGAKLA 155
Query: 121 RAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVA 158
           RAAG S  +     D V+L+LPS     V   C A V 
Sbjct: 156 RAAGTSAQIQGREGDYVILRLPSGELRKVHGECYATVG 193

>pdb|3BBO|E Chain E, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 269

Iteration: 1
 Score = 52.8 bits (125), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 13/159 (8%)
Query: 2   VVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFL 61
           ++ A   GG  + ++   DFRR   D    +  +++ I   P    R A + L+  GD  
Sbjct: 44  IITARHRGGGHKRLYRKIDFRRNEKD----IYGKIVTIEYDPN---RNAYICLIHYGDGE 96
Query: 62  K-LILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYA 120
           K  IL       GD + +   +P      K G+A P+  +P+G+ +  +E   G G   A
Sbjct: 97  KRYILHPRGAIIGDTIVSGTEVP-----IKMGNALPLTDMPLGTAIHNIEITLGRGGQLA 151
Query: 121 RAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
           RAAG    L+        L+LPS     + K+C A V Q
Sbjct: 152 RAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 190

>pdb|1RL2|A Chain A, Ribosomal Protein L2 Rna-Binding Domain From Bacillus Stearothermophilus Length = 137

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 16  HWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLK-LILATENMKAGD 74
           + + DF+R    D   +  RV  I   P    R+AN+AL+   D  K  I+A +N+K G 
Sbjct: 2   YRIIDFKR----DKDGIPGRVATIEYDPN---RSANIALINYADGEKRYIIAPKNLKVGX 54
Query: 75  ILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLH 134
            + +    P   +  K G+A P+  +P+G++V  +E  PG G    RAAG S  ++    
Sbjct: 55  EIXSG---PDADI--KIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEG 109
Query: 135 DRVVLQLPSKHEVAVDKHCMAVVAQ 159
             V+++L S     +   C A V +
Sbjct: 110 KYVIVRLASGEVRXILGKCRATVGE 134

>pdb|487D|I Chain I, Seven Ribosomal Proteins Fitted To A Cryo-Electron Microscopic Map Of The Large 50s Subunit At 7.5 Angstroms Resolution Length = 135

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 70/145 (48%), Gaps = 13/145 (8%)
Query: 16  HWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLK-LILATENMKAGD 74
           + + DF+R    D   +  RV  I   P    R+AN+AL+   D  K  I+A +N+K G 
Sbjct: 2   YRIIDFKR----DKDGIPGRVATIEYDPN---RSANIALINYADGEKRYIIAPKNLKVGX 54
Query: 75  ILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLH 134
            + +    P   +  K G+A P+  +P+G++V  +E  PG G    RAAG S  ++    
Sbjct: 55  EIXSG---PDADI--KIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEG 109
Query: 135 DRVVLQLPSKHEVAVDKHCMAVVAQ 159
             V+++L S     +   C A V +
Sbjct: 110 KYVIVRLASGEVRXILGKCRATVGE 134

>pdb|2B66|D Chain D, 50s Ribosomal Subunit From A Crystal Structure Of Release Factor Rf1, Trnas And Mrna Bound To The Ribosome. This File Contains The 50s Subunit From A Crystal Structure Of Release Factor Rf1, Trnas And Mrna Bound To The Ribosome And Is Described In Remark 400 Length = 173

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 69/146 (47%), Gaps = 15/146 (10%)
Query: 16  HWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLK-LILATENMKAGD 74
           + + DF+R    D   +  RV  I   P    R+AN+AL+   D  K  I+A +N+K G 
Sbjct: 2   YRIIDFKR----DKDGIPGRVATIEYDPN---RSANIALINYADGEKRYIIAPKNLKVG- 53
Query: 75  ILKTSMFIPRIP-VRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTL 133
                M I   P    K G+A P+  +P+G++V  +E  PG G    RAAG S  ++   
Sbjct: 54  -----MEIMSGPDADIKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKE 108
Query: 134 HDRVVLQLPSKHEVAVDKHCMAVVAQ 159
              V+++L S     +   C A V +
Sbjct: 109 GKYVIVRLASGEVRMILGKCRATVGE 134

>pdb|1GIY|D Chain D, Crystal Structure Of The Ribosome At 5.5 A Resolution. This File, 1giy, Contains The 50s Ribosome Subunit. The 30s Ribosome Subunit, Three Trna, And Mrna Molecules Are In The File 1gix Length = 178

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/142 (31%), Positives = 67/142 (47%), Gaps = 15/142 (10%)
Query: 20  DFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLK-LILATENMKAGDILKT 78
           DF+R    D   +  RV  I   P    R+AN+AL+   D  K  I+A +N+K G     
Sbjct: 6   DFKR----DKDGIPGRVATIEYDPN---RSANIALINYADGEKRYIIAPKNLKVG----- 53
Query: 79  SMFIPRIP-VRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRV 137
            M I   P    K G+A P+  +P+G++V  +E  PG G    RAAG S  ++      V
Sbjct: 54  -MEIMSGPDADIKIGNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYV 112
Query: 138 VLQLPSKHEVAVDKHCMAVVAQ 159
           +++L S     +   C A V +
Sbjct: 113 IVRLASGEVRMILGKCRATVGE 134

>pdb|2ZKR|AA Chain a, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 257

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 54/114 (47%), Gaps = 8/114 (7%)
Query: 36  VIQIIPSPAPTVRTANLALVGSGDFLKLILATENMKAGDILKTSMFIP-RIPVRAKEGDA 94
           V  II  P    R A LA V   D  +    TE   A + + T  F+      +   G+ 
Sbjct: 45  VKDIIHDPG---RGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNV 101
Query: 95  YPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLV----RTLHDRVVLQLPSK 144
            PVG +P G+IVCC+E+ PG+    ARA+GN  T++     T   RV L   SK
Sbjct: 102 LPVGTMPEGTIVCCLEEKPGDRGKLARASGNYATVISHNPETKKTRVKLPSGSK 155

>pdb|3ZF7|EE Chain e, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 260

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/99 (30%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
Query: 62  KLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYAR 121
           +L++A E M  G  +   +  P        G+  P+G +  G IVC VE   G+    AR
Sbjct: 74  ELMVAPEGMFTGQSMLCGVKAP-----LAIGNVLPLGQITEGCIVCNVEAKVGDRGTLAR 128
Query: 122 AAGNSCTLV--RTLHDRVVLQLPSKHEVAVDKHCMAVVA 158
           A+G+ C ++   T   R  L+LPS  +  V   C A++ 
Sbjct: 129 ASGDYCIIISHNTETGRTRLKLPSGQKKTVPSSCRAMIG 167

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	159
2ftc_B	136	Mitochondrial ribosomal protein L2; mitochondrial	1e-19
1vq8_A	240	50S ribosomal protein L2P; ribosome 50S, protein-p	2e-19
3jyw_B	243	60S ribosomal protein L2; eukaryotic ribosome, RAC	8e-19
3iz5_B	261	60S ribosomal protein L2 (L2P); eukaryotic ribosom	8e-19
4a17_A	264	RPL8; eukaryotic ribosome, ribosome, eukaryotic in	3e-18
1rl2_A	137	Protein (ribosomal protein L2); RNA-binding domain	5e-15
3v2d_D	276	50S ribosomal protein L2; ribosome associated inhi	6e-15
3r8s_C	271	50S ribosomal protein L2; protein biosynthesis, RN	2e-14
3bbo_E	269	Ribosomal protein L2; large ribosomal subunit, spi	2e-14
1giy_D	178	50S ribosomal protein L2; ribosome assembly, prote	4e-14

>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B Length = 136

 Score = 78.4 bits (194), Expect = 1e-19
 Identities = 52/112 (46%), Positives = 77/112 (68%)

Query: 48  RTANLALVGSGDFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVC 107
           R+A++ALV  G   + I+ATENM+AGD +  S  I R+ V A+EGDA+P+GALP+G+++ 
Sbjct: 10  RSADIALVAGGSRKRWIIATENMQAGDTILNSNHIGRMAVAAREGDAHPLGALPVGTLIN 69

Query: 108 CVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
            VE  PG GA Y RAAG    L+R ++   ++QLPSK ++ V + C+A V +
Sbjct: 70  NVESEPGRGAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETCVATVGR 121

>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ... Length = 240

 Score = 80.7 bits (200), Expect = 2e-19
 Identities = 41/141 (29%), Positives = 62/141 (43%), Gaps = 12/141 (8%)

Query: 20  DFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLK-LILATENMKAGDILKT 78
             +    D        V+ I   PA   R+A +A V   D  + LILA E +  GD L+ 
Sbjct: 30  HRKVEDGDVIAG---TVVDIEHDPA---RSAPVAAVEFEDGDRRLILAPEGVGVGDELQV 83

Query: 79  SMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVV 138
                   +    G+  P+  +P G  VC VE  PG+G  +ARA+G +  L+    +  V
Sbjct: 84  G---VSAEI--APGNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAV 138

Query: 139 LQLPSKHEVAVDKHCMAVVAQ 159
           ++LPS     +D  C A +  
Sbjct: 139 VKLPSGEMKRLDPQCRATIGV 159

>3jyw_B 60S ribosomal protein L2; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_B 3izs_B 3o58_B 3o5h_B 3u5e_A 3u5i_A 1s1i_B Length = 243

 Score = 78.8 bits (195), Expect = 8e-19
 Identities = 30/120 (25%), Positives = 53/120 (44%), Gaps = 13/120 (10%)

Query: 48  RTANLALVGSGD------FLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALP 101
           R A LA V   D        ++ +A E +  G  +       +  +    G+  P+G++P
Sbjct: 53  RGAPLAKVVFRDPYKYRLREEIFIANEGVHTGQFI---YAGKKASL--NVGNVLPLGSVP 107

Query: 102 MGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHD--RVVLQLPSKHEVAVDKHCMAVVAQ 159
            G+IV  VE+ PG+    ARA+GN   ++    D  +  ++LPS  +  +      V+  
Sbjct: 108 EGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARGVIGV 167

>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A Length = 264

 Score = 77.6 bits (192), Expect = 3e-18
 Identities = 29/120 (24%), Positives = 51/120 (42%), Gaps = 13/120 (10%)

Query: 48  RTANLALVGSGDFLK------LILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALP 101
           R A LA V   D  +        +A E   +G  +       +  +    G+  P+  +P
Sbjct: 55  RGAPLAEVAFRDPYRYKTNKEHFIAAEGQYSGQYVYCG---LKAQI--AVGNVLPINRIP 109

Query: 102 MGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHD--RVVLQLPSKHEVAVDKHCMAVVAQ 159
            G++VC VE+  G+   ++RA+G   T++    D  +  ++LPS     +   C A V  
Sbjct: 110 EGTVVCNVEEKVGDRGTFSRASGCYATIIGHSEDGDKTRIRLPSGARKTIPGSCRATVGI 169

>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I Length = 137

 Score = 66.7 bits (164), Expect = 5e-15
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 48  RTANLALVGSGDFLK-LILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIV 106
           R+AN+AL+   D  K  I+A +N+K G  + +    P   +  K G+A P+  +P+G++V
Sbjct: 27  RSANIALINYADGEKRYIIAPKNLKVGMEIMSG---PDADI--KIGNALPLENIPVGTLV 81

Query: 107 CCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
             +E  PG G    RAAG S  ++      V+++L S     +   C A V +
Sbjct: 82  HNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRMILGKCRATVGE 134

>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ... Length = 276

 Score = 69.1 bits (170), Expect = 6e-15
 Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 13/153 (8%)

Query: 8   GGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLK-LILA 66
           GGG K     + DF+R      P      I+  P+     R+A +AL+   D  K  I+A
Sbjct: 55  GGGHKRLYRII-DFKRWDKVGIPAKVAA-IEYDPN-----RSARIALLHYVDGEKRYIIA 107

Query: 67  TENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNS 126
            + ++ G  +      P  P+  + G+A P+  +P+G++V  VE  P +GA  ARAAG S
Sbjct: 108 PDGLQVGQQVVAG---PDAPI--QVGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTS 162

Query: 127 CTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
             +     D V+L+LPS     V   C A V  
Sbjct: 163 AQIQGREGDYVILRLPSGELRKVHGECYATVGA 195

>3r8s_C 50S ribosomal protein L2; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_C 2wwq_C 3oat_C* 3oas_C* 3ofd_C 3ofc_C 3ofr_C* 3ofz_C* 3og0_C 3ofq_C 3r8t_C 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C 3df2_C ... Length = 271

 Score = 67.5 bits (166), Expect = 2e-14
 Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 48  RTANLALVGSGDFLKL-ILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIV 106
           R+AN+ALV   D  +  ILA + +KAGD +++        +  K G+  P+  +P+GS V
Sbjct: 86  RSANIALVLYKDGERRYILAPKGLKAGDQIQSG---VDAAI--KPGNTLPMRNIPVGSTV 140

Query: 107 CCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
             VE  PG+G   AR+AG    +V      V L+L S     V+  C A + +
Sbjct: 141 HNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGE 193

>3bbo_E Ribosomal protein L2; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 269

 Score = 67.5 bits (166), Expect = 2e-14
 Identities = 35/113 (30%), Positives = 52/113 (46%), Gaps = 6/113 (5%)

Query: 48  RTANLALVGSGDFLK-LILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIV 106
           R A + L+  GD  K  IL       GD + +      +P+  K G+A P+  +P+G+ +
Sbjct: 83  RNAYICLIHYGDGEKRYILHPRGAIIGDTIVSG---TEVPI--KMGNALPLTDMPLGTAI 137

Query: 107 CCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
             +E   G G   ARAAG    L+        L+LPS     + K+C A V Q
Sbjct: 138 HNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ 190

>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D Length = 178

 Score = 65.2 bits (160), Expect = 4e-14
 Identities = 35/113 (30%), Positives = 58/113 (51%), Gaps = 6/113 (5%)

Query: 48  RTANLALVGSGDFLK-LILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIV 106
           R+AN+AL+   D  K  I+A +N+K G  + +    P   +  K G+A P+  +P+G++V
Sbjct: 27  RSANIALINYADGEKRYIIAPKNLKVGMEIMSG---PDADI--KIGNALPLENIPVGTLV 81

Query: 107 CCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ 159
             +E  PG G    RAAG S  ++      V+++L S     +   C A V +
Sbjct: 82  HNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRMILGKCRATVGE 134

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	159
3r8s_C	271	50S ribosomal protein L2; protein biosynthesis, RN	100.0
3v2d_D	276	50S ribosomal protein L2; ribosome associated inhi	100.0
3bbo_E	269	Ribosomal protein L2; large ribosomal subunit, spi	100.0
1rl2_A	137	Protein (ribosomal protein L2); RNA-binding domain	100.0
1giy_D	178	50S ribosomal protein L2; ribosome assembly, prote	100.0
3j21_B	239	50S ribosomal protein L2P; archaea, archaeal, KINK	100.0
3iz5_B	261	60S ribosomal protein L2 (L2P); eukaryotic ribosom	100.0
4a17_A	264	RPL8; eukaryotic ribosome, ribosome, eukaryotic in	100.0
2ftc_B	136	Mitochondrial ribosomal protein L2; mitochondrial	100.0
3jyw_B	243	60S ribosomal protein L2; eukaryotic ribosome, RAC	100.0
1vq8_A	240	50S ribosomal protein L2P; ribosome 50S, protein-p	100.0

>3r8s_C 50S ribosomal protein L2; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_C 3j19_C 2wwq_C 3oat_C* 3oas_C* 3ofd_C 3ofc_C 3ofr_C* 3ofz_C* 3og0_C 3ofq_C 3r8t_C 3i1n_C 1vs8_C 1vs6_C 2aw4_C 2awb_C 2vhm_C 2vhn_C 3bbx_C ...

Probab=100.00  E-value=3.4e-61  Score=402.66  Aligned_cols=146  Identities=32%  Similarity=0.447  Sum_probs=139.3

Q ss_pred             CeeEecccCCcccceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeec
Q psy13418          1 RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTS   79 (159)
Q Consensus         1 rit~rhrGGG~K~~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~   79 (159)
                      |||+|||||||||+||+|||+|+..   +  +.++|++|||||   +|||+||||.|.| +++||||||+|++||+|+++
T Consensus        47 rIt~rhrGGGhKr~yR~IDf~r~~~---~--i~g~V~~IeyDP---nRsA~IAlv~~~dg~k~YIlAp~gl~~Gd~I~sg  118 (271)
T 3r8s_C           47 RITTRHIGGGHKQAYRIVDFKRNKD---G--IPAVVERLEYDP---NRSANIALVLYKDGERRYILAPKGLKAGDQIQSG  118 (271)
T ss_dssp             CBSSTTBCCCCCCCEECBCCSCCCB---S--CCEEEEEEEECT---TSSSEEEEEEETTSCEEEEECBTTCCSSCBCCBS
T ss_pred             CEEEeecCCCcCcceEEEeeccccC---C--CCEEEEEEEECC---CCceeEEEEEecCCCEEEEEeeCCCcCCCEEEEC
Confidence            7999999999999999999999753   2  359999999999   9999999999865 89999999999999999999


Q ss_pred             CCCCCCcccCCCCCeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418         80 MFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ  159 (159)
Q Consensus        80 ~~~~~~~~~~~~Gn~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~  159 (159)
                      .++     ++++||+|||.+||+||.|||||+.||+||||||||||||+|++|++++++|||||||+|+|+++|+||||+
T Consensus       119 ~~a-----~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~~~~~vrLPSGe~r~i~~~c~ATIG~  193 (271)
T 3r8s_C          119 VDA-----AIKPGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGE  193 (271)
T ss_dssp             SSS-----CSSTTCEEEGGGSCTTCEEESCCSSTTTCCCSCCSTTCCEEEEECSTTEEEEECTTSCEEEEETTCEEEESC
T ss_pred             CCC-----CCCcCcEeehhhCCCCCEEEEEEecCCCCceEEEeCCCeEEEEEecCCEEEEECCCCCeEEEcccCeEEEEe
Confidence            875     789999999999999999999999999999999999999999999999999999999999999999999995

>3v2d_D 50S ribosomal protein L2; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_B 2hgj_D 2hgq_D 2hgu_D 1vsa_B 2j03_D 2jl6_D 2jl8_D 2v47_D 2v49_D 2wdi_D 2wdj_D 2wdl_D 2wdn_D 2wh2_D 2wh4_D 2wrj_D 2wrl_D 2wro_D 2wrr_D ...

Probab=100.00  E-value=6.2e-61  Score=401.92  Aligned_cols=146  Identities=31%  Similarity=0.408  Sum_probs=138.6

Q ss_pred             CeeEecccCCcccceEEccccc-cCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeee
Q psy13418          1 RVVVAGLGGGIKEDIHWVHDFR-RGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKT   78 (159)
Q Consensus         1 rit~rhrGGG~K~~yR~Id~~r-~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~   78 (159)
                      |||+|||||||||+||+|||+| +..   +  +.++|++|||||   +|||+||||.|.| +++||||||+|++||+|++
T Consensus        48 rIt~rhrGGGhKr~yR~IDf~R~~k~---~--i~g~V~~IeyDP---nRsA~IAlv~~~dg~k~yIlAp~gl~~Gd~I~s  119 (276)
T 3v2d_D           48 RITVRFRGGGHKRLYRIIDFKRWDKV---G--IPAKVAAIEYDP---NRSARIALLHYVDGEKRYIIAPDGLQVGQQVVA  119 (276)
T ss_dssp             CBSSSSBCCCCCCEEECCCCCCGGGT---T--CCEEEEEEECCT---TSSSCEEEEEETTSCEEEEECBTTCCTTCEECB
T ss_pred             CEEEeecCCCcccceEEeeeccccCC---C--CCEEEEEEEECC---CCCceEEEEEeCCCCEEEEEeeCCCcCCCEEEe
Confidence            7999999999999999999999 432   1  369999999999   9999999999865 8999999999999999999


Q ss_pred             cCCCCCCcccCCCCCeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeec
Q psy13418         79 SMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVA  158 (159)
Q Consensus        79 ~~~~~~~~~~~~~Gn~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG  158 (159)
                      +..+     ++++||+|||.+||+||.|||||+.||+||||||||||||+|++|++++++|||||||+|+|+++|+||||
T Consensus       120 g~~a-----~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~~~~~vrLPSGe~r~i~~~c~AtIG  194 (276)
T 3v2d_D          120 GPDA-----PIQVGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGDYVILRLPSGELRKVHGECYATVG  194 (276)
T ss_dssp             STTC-----CSSTTCEEEGGGSCTTCEEESEESSTTSCEEESCSTTCCEEEEEEETTEEEEECTTSCEEEEETTCEEEES
T ss_pred             CCCC-----CCCCCCeehhhhCCCCCEEEEEEecCCCCceEEEeCCCeEEEEEecCCEEEEECCCCCeEEEcccCeEEEE
Confidence            9875     78999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             C
Q psy13418        159 Q  159 (159)
Q Consensus       159 ~  159 (159)
                      +
T Consensus       195 ~  195 (276)
T 3v2d_D          195 A  195 (276)
T ss_dssp             C
T ss_pred             e
Confidence            6

>3bbo_E Ribosomal protein L2; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=100.00  E-value=6.2e-61  Score=400.95  Aligned_cols=146  Identities=27%  Similarity=0.403  Sum_probs=139.0

Q ss_pred             CeeEecccCCcccceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeec
Q psy13418          1 RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTS   79 (159)
Q Consensus         1 rit~rhrGGG~K~~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~   79 (159)
                      |||+||||||||++||+|||+|+...     +.++|++|||||   +|||+||||.|.| +++||||||+|++||+|+++
T Consensus        44 rit~rhrGGGhKr~yR~IDf~r~~~~-----i~g~V~~IeyDP---nRsA~IAlv~y~dg~k~yIlAp~gl~~Gd~I~sg  115 (269)
T 3bbo_E           44 IITARHRGGGHKRLYRKIDFRRNEKD-----IYGKIVTIEYDP---NRNAYICLIHYGDGEKRYILHPRGAIIGDTIVSG  115 (269)
T ss_dssp             SCCCSCCCCCSCCCCCCCCCSCCCCS-----CCCCCCCCCCCS---SSCSCCCCCCCSSCCCCCCCCCSSCSSCCCCCCS
T ss_pred             CEEEEecCCccccccceeeecccCCC-----ccEEEEEEEECC---CCCeeEEEEEeCCCCEEEEEchhhcccccEEEEC
Confidence            69999999999999999999997532     469999999999   9999999999765 89999999999999999999


Q ss_pred             CCCCCCcccCCCCCeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418         80 MFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ  159 (159)
Q Consensus        80 ~~~~~~~~~~~~Gn~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~  159 (159)
                      .++     ++++||+|||.+||+||.|||||+.||+||||||||||||+|++||+++++|||||||+|+|+++|+||||+
T Consensus       116 ~~a-----~i~~GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~ke~~~~~vrLPSGe~r~v~~~c~AtIG~  190 (269)
T 3bbo_E          116 TEV-----PIKMGNALPLTDMPLGTAIHNIEITLGRGGQLARAAGAVAKLIAKEGKSATLKLPSGEVRLISKNCSATVGQ  190 (269)
T ss_dssp             SSC-----CCSSCSCEEGGGCSSCSSCCCCCSSSSCCCSSCCTTTCCCBCCSSCSTTCCCBCSTTCBCCCCSSCEECSCC
T ss_pred             CCC-----CCCcCCEeEeccCCCCCEEEeEeccCCCCceEEeeCCCEEEEEEecCCEEEEECCCCCEEEEchhhheeEee
Confidence            875     689999999999999999999999999999999999999999999999999999999999999999999996

>1rl2_A Protein (ribosomal protein L2); RNA-binding domain, peptidyltransferease center, X-RAY diffraction; 2.30A {Geobacillus stearothermophilus} SCOP: b.34.5.3 b.40.4.5 PDB: 1c04_A 487d_I

Probab=100.00  E-value=1.3e-57  Score=349.49  Aligned_cols=133  Identities=29%  Similarity=0.409  Sum_probs=125.8

Q ss_pred             ceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeecCCCCCCcccCCCC
Q psy13418         14 DIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTSMFIPRIPVRAKEG   92 (159)
Q Consensus        14 ~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~~~~~~~~~~~~~G   92 (159)
                      +||+|||+|+..   +  ..++|++|||||   ||||+||||.|.| +++|||||+||++||+|+++.++     ++++|
T Consensus         1 ~yR~iDf~r~~~---~--i~~~V~~IeyDP---nRsA~IAlv~y~dg~k~yIlAp~gl~~Gd~I~~g~~a-----~i~~G   67 (137)
T 1rl2_A            1 QYRIIDFKRDKD---G--IPGRVATIEYDP---NRSANIALINYADGEKRYIIAPKNLKVGMEIMSGPDA-----DIKIG   67 (137)
T ss_dssp             CCSCBCSSCCCT---T--CCEEEEEEEEEG---GGTEEEEEEEETTSCEEEEECCTTCCTTCEECBSTTC-----CSCTT
T ss_pred             CCceEecccccC---C--ccEEEEEEEECC---CCCEEEEEEEeCCCCEEEEEecccCccceEEEECCcc-----ccccC
Confidence            589999999753   2  369999999999   9999999999875 89999999999999999999875     68999


Q ss_pred             CeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418         93 DAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ  159 (159)
Q Consensus        93 n~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~  159 (159)
                      |+|||++||+||.|||||++||+||||||||||||+|++|++++++|||||||+|+|+++|+||||+
T Consensus        68 N~lpL~~iP~Gt~IhNIE~~pG~gg~laRsAGt~a~ii~ke~~~~~vrLPSGe~r~v~~~c~AtIG~  134 (137)
T 1rl2_A           68 NALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRMILGKCRATVGE  134 (137)
T ss_dssp             CEEEGGGSCTTCEEESEESSTTSCEEESSSSSCCEEEEEEETTEEEEECTTSCEEEEETTSEEEESC
T ss_pred             CEeehhhCCCCCEEEEEEccCCCCcEEEEeCCCeEEEEEEcCCEEEEECCCCCeEEECCcCcEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999996

>1giy_D 50S ribosomal protein L2; ribosome assembly, protein synthesis, LIFE; 5.50A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1ml5_d* 1yl3_D 2b66_D 2b9n_D 2b9p_D

Probab=100.00  E-value=6.4e-55  Score=346.68  Aligned_cols=133  Identities=29%  Similarity=0.406  Sum_probs=125.7

Q ss_pred             ceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeecCCCCCCcccCCCC
Q psy13418         14 DIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTSMFIPRIPVRAKEG   92 (159)
Q Consensus        14 ~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~~~~~~~~~~~~~G   92 (159)
                      +||+|||+|+...     +.++|++|||||   +|||+||||.|.| +++||||||||++||+|+++.++     ++++|
T Consensus         1 ~yR~iDf~r~~~~-----i~~~V~~IeyDP---~RsA~IAlv~y~dg~~~yilAp~gl~~Gd~I~~g~~a-----~i~~G   67 (178)
T 1giy_D            1 QYRIIDFKRDKDG-----IPGRVATIEYDP---NRSANIALINYADGEKRYIIAPKNLKVGMEIMSGPDA-----DIKIG   67 (178)
T ss_pred             CCceeecccccCC-----ccEEEEEEEECC---CCCeEEEEEEecCCCEEEEECccCCccccEEEECCCC-----ccccC
Confidence            5999999997532     369999999999   9999999999765 89999999999999999999875     68999


Q ss_pred             CeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418         93 DAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ  159 (159)
Q Consensus        93 n~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~  159 (159)
                      |+|||++||+||.|||||++||+||||||||||||+|++|++++++|||||||+|+|+++|+||||+
T Consensus        68 N~lpL~~iP~Gt~I~NIE~~pG~gg~laRsAGt~a~ii~ke~~~~~vrLPSGe~r~v~~~c~AtIG~  134 (178)
T 1giy_D           68 NALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRMILGKCRATVGE  134 (178)
T ss_pred             CCcccccCCCCCEEEeEeccCCCCeEEEEeCCCeEEEEEecCCeEEEECCCCCEEEEcccCcEEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999999995

>3j21_B 50S ribosomal protein L2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.2e-53  Score=352.01  Aligned_cols=132  Identities=29%  Similarity=0.411  Sum_probs=125.4

Q ss_pred             ceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeecCCCCCCcccCCCC
Q psy13418         14 DIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTSMFIPRIPVRAKEG   92 (159)
Q Consensus        14 ~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~~~~~~~~~~~~~G   92 (159)
                      +||.|||+|...      +.++|++|||||   ||||+||||.|.| +++||||||||++||+|+++.++     ++++|
T Consensus        29 ~yR~iDf~r~~~------i~g~V~~IeyDP---nRsA~IALV~~~dgek~YIlApeGl~vGd~I~sG~~a-----~i~~G   94 (239)
T 3j21_B           29 KYIPLNYTQEKT------LRGVVEEIMHDP---GRTAPVARVKFENGIEKLIIAPEGLLVGQEIYIGPDA-----PIAVG   94 (239)
T ss_dssp             CCCSTTCSTTCC------EEEEEEEEEEET---TTTEEEEEEEESSSCEEEECCBTTCCTTCEEEESSSS-----CSSTT
T ss_pred             hcceeccccCCC------ccEEEEEEEECC---CCCeeEEEEEecCCCEEEEEccccCccccEEEECCCC-----CCCcC
Confidence            799999996432      469999999999   9999999999876 99999999999999999999875     78999


Q ss_pred             CeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418         93 DAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ  159 (159)
Q Consensus        93 n~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~  159 (159)
                      |+|||.+||+||.|||||+.||+||||||||||||+|++|++++++|||||||+|+|+++|+||||+
T Consensus        95 N~LPL~~iP~GT~I~NIE~~pG~gg~laRsAGt~A~ii~k~~~~~~vrLPSGe~r~v~~~c~AtIG~  161 (239)
T 3j21_B           95 NTLPLAKIPEGTYVYNIEGIPGDGGKYVRAGGTYALVVSREPDKVIVQLPSGELKAFNPMCRATIGV  161 (239)
T ss_dssp             CEEETTTSCTTCEEESCCSSSSSCCCSCCSTTCCEEEEEECSSCEEEECTTSCEEEECTTCEEEESC
T ss_pred             CEeeccccCCCCEEEeEEecCCCceeEEEecCCeEEEEEecCCEEEEEcCCCCEEEEeccCeEEEee
Confidence            9999999999999999999999999999999999999999999999999999999999999999995

>4a17_A RPL8; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_A 4a1c_A 4a1e_A

Probab=100.00  E-value=2.1e-53  Score=353.99  Aligned_cols=141  Identities=23%  Similarity=0.336  Sum_probs=129.4

Q ss_pred             EecccCCcccceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC------ceEEEEeeccceeceeee
Q psy13418          4 VAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD------FLKLILATENMKAGDILK   77 (159)
Q Consensus         4 ~rhrGGG~K~~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~------~~~yIla~eg~~~Gd~I~   77 (159)
                      ++||.|.++  ||+|||+|+..     .+.++|++|||||   ||||+||||.|.|      +++||||||||++||+|+
T Consensus        21 ~~~r~g~~~--yR~IDf~r~~~-----~i~g~V~~IeyDP---nRsA~IAlv~~~dg~~~k~~k~YIlApeGl~vGd~I~   90 (264)
T 4a17_A           21 KSGRIAPAQ--YRVYDFAERQG-----YIRGCIRDIVHEP---GRGAPLAEVAFRDPYRYKTNKEHFIAAEGQYSGQYVY   90 (264)
T ss_dssp             CTTCCCCCC--CCCCCHHHHHS-----EEEEEEEEEECCT---TCSSCEEEEEEECTTSSCEEEEEEECBTTCBTTCEEE
T ss_pred             ccccccccc--cceeeecccCC-----CcCEEEEEEEECC---CCCceEEEEEecCCCcccceEEEEEeecCCccccEEE
Confidence            456666554  99999999743     1469999999999   9999999999754      689999999999999999


Q ss_pred             ecCCCCCCcccCCCCCeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEe--CCEEEEEcCCCcEEEECCCCee
Q psy13418         78 TSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTL--HDRVVLQLPSKHEVAVDKHCMA  155 (159)
Q Consensus        78 ~~~~~~~~~~~~~~Gn~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~--~~~~~vkLPSg~~k~i~~~c~A  155 (159)
                      ++.++     ++++||+|||++||+||.|||||++||+||||||||||||+|++|+  +++++|||||||+|+|+++|+|
T Consensus        91 sg~~a-----~i~~GN~LPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~~CrA  165 (264)
T 4a17_A           91 CGLKA-----QIAVGNVLPINRIPEGTVVCNVEEKVGDRGTFSRASGCYATIIGHSEDGDKTRIRLPSGARKTIPGSCRA  165 (264)
T ss_dssp             EESSC-----CCCTTCEEEGGGSCTTCEEESBCSSTTCSCCBCCSTTCCEEEEEECSSSCEEEEECTTSCEEEEETTCEE
T ss_pred             ECCCC-----CCCcCCcccHhhCCCCCEEEEEEecCCCcceEEEeCCCeEEEEEEccCCCEEEEECCCCCEEEEeccCcE
Confidence            99885     7899999999999999999999999999999999999999999996  8999999999999999999999


Q ss_pred             eecC
Q psy13418        156 VVAQ  159 (159)
Q Consensus       156 tIG~  159 (159)
                      |||+
T Consensus       166 TIG~  169 (264)
T 4a17_A          166 TVGI  169 (264)
T ss_dssp             EESC
T ss_pred             EEEe
Confidence            9995

>2ftc_B Mitochondrial ribosomal protein L2; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_B

Probab=100.00  E-value=9.1e-52  Score=316.66  Aligned_cols=121  Identities=46%  Similarity=0.748  Sum_probs=112.7

Q ss_pred             EEEEeEcCCCCCcceeEEEeeeCCceEEEEeeccceeceeeeecCCCCCCcccCCCCCeecCCCCCCCceeeeeEEeCCC
Q psy13418         36 VIQIIPSPAPTVRTANLALVGSGDFLKLILATENMKAGDILKTSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGE  115 (159)
Q Consensus        36 V~~i~yDp~~~~Rsa~Ialv~~~~~~~yIla~eg~~~Gd~I~~~~~~~~~~~~~~~Gn~lpL~~iP~Gt~I~nIE~~pg~  115 (159)
                      |++|||||   ||||+||||.+.++++|||||+||++||+|+++.+...+++++++||+|||++||+||.|||||++||+
T Consensus         1 V~~IeyDP---nRsA~IAlv~~~~~k~yIlAp~gl~~Gd~I~s~~~~g~~a~~i~~GN~lpL~~iP~Gt~IhNIE~~pG~   77 (136)
T 2ftc_B            1 VIQVRYDP---CRSADIALVAGGSRKRWIIATENMQAGDTILNSNHIGRMAVAAREGDAHPLGALPVGTLINNVESEPGR   77 (136)
T ss_pred             CEEEEECC---CCCcEEEEEECCCeeEEEEeecCCcCCCEEEECCcccccccccCcCcEEEecccCCCCEEEEEeccCCC
Confidence            68999999   999999999776569999999999999999998763333347899999999999999999999999999


Q ss_pred             CceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418        116 GAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ  159 (159)
Q Consensus       116 Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~  159 (159)
                      ||||||||||||+|++|++++++|||||||+|+|+++||||||+
T Consensus        78 gg~laRsAGt~a~ii~ke~~~~~vrLPSGe~r~v~~~c~AtIG~  121 (136)
T 2ftc_B           78 GAQYIRAAGTCGVLLRKVNGTAIIQLPSKRQMQVLETCVATVGR  121 (136)
T ss_pred             CcEEEEeCCCeEEEEEecCCEEEEECCCCCeEEECcCCcEEEEE
Confidence            99999999999999999999999999999999999999999995

>3jyw_B 60S ribosomal protein L2; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_B 3izs_B 3o58_B 3o5h_B 3u5e_A 3u5i_A 4b6a_A 1s1i_B

Probab=100.00  E-value=6.9e-54  Score=353.89  Aligned_cols=141  Identities=24%  Similarity=0.340  Sum_probs=129.4

Q ss_pred             EecccCCcccceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC------ceEEEEeeccceeceeee
Q psy13418          4 VAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD------FLKLILATENMKAGDILK   77 (159)
Q Consensus         4 ~rhrGGG~K~~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~------~~~yIla~eg~~~Gd~I~   77 (159)
                      ++||.|.  .+||+|||+|+...     +.++|++|||||   ||||+||||.|.|      +++||||||||++||+|+
T Consensus        19 ~~~r~g~--~~yR~iDf~r~~~~-----i~g~V~~IeyDP---nRsA~IAlv~~~dg~~~k~~k~yIlApeGl~vGd~I~   88 (243)
T 3jyw_B           19 TRLRQGA--AKLRTLDYAERHGY-----IRGIVKQIVHDS---GRGAPLAKVVFRDPYKYRLREEIFIANEGVHTGQFIY   88 (243)
T ss_dssp             SSSSCCC--SCCCCCCSCCSSCS-----SCCBBCCCCEET---TTTEECCBBCCSSCCSSSSCCCBCCCCTTCCSSCBCC
T ss_pred             ccccccc--hhcceeeecccCCC-----cCEEEEEEEECC---CceeEEEEEEecCCCcccceEEEEEeecCCccccEEE
Confidence            4566664  45999999997532     369999999999   9999999999765      679999999999999999


Q ss_pred             ecCCCCCCcccCCCCCeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEe--CCEEEEEcCCCcEEEECCCCee
Q psy13418         78 TSMFIPRIPVRAKEGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTL--HDRVVLQLPSKHEVAVDKHCMA  155 (159)
Q Consensus        78 ~~~~~~~~~~~~~~Gn~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~--~~~~~vkLPSg~~k~i~~~c~A  155 (159)
                      ++.++     ++++||+|||++||+||.|||||+.||+||||||||||||+|++|+  +++++|||||||+|+|+++|+|
T Consensus        89 sg~~a-----~i~~GN~lPL~~IP~GT~IhNIE~~pG~gg~laRsAGt~A~ii~k~~e~~~~~vrLPSGe~r~v~~~c~A  163 (243)
T 3jyw_B           89 AGKKA-----SLNVGNVLPLGSVPEGTIVSNVEEKPGDRGALARASGNYVIIIGHNPDENKTRVRLPSGAKKVISSDARG  163 (243)
T ss_dssp             CSTTC-----CCCBTCEEESSSSCTTEEEESBCCSSCCSCCBCCSSSCCEEECCCSSSCSSBCEECSSSCCCCBSSCCEE
T ss_pred             ECCCC-----CCCcCCEeccccCCCCCEEEEEEecCCCcceEEEecCCeEEEEEEccCCCEEEEECCCCCEEEEeccCeE
Confidence            99885     7899999999999999999999999999999999999999999996  8999999999999999999999


Q ss_pred             eecC
Q psy13418        156 VVAQ  159 (159)
Q Consensus       156 tIG~  159 (159)
                      |||+
T Consensus       164 TIG~  167 (243)
T 3jyw_B          164 VIGV  167 (243)
T ss_dssp             EESC
T ss_pred             EEEe
Confidence            9995

>1vq8_A 50S ribosomal protein L2P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.3 b.40.4.5 PDB: 1vq4_A* 1vq5_A* 1vq6_A* 1vq7_A* 1s72_A* 1vq9_A* 1vqk_A* 1vql_A* 1vqm_A* 1vqn_A* 1vqo_A* 1vqp_A* 1yhq_A* 1yi2_A* 1yij_A* 1yit_A* 1yj9_A* 1yjn_A* 1yjw_A* 2otj_A* ...

Probab=100.00  E-value=9.7e-52  Score=340.59  Aligned_cols=131  Identities=31%  Similarity=0.479  Sum_probs=122.6

Q ss_pred             cceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeecCCCCCCcccCCC
Q psy13418         13 EDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTSMFIPRIPVRAKE   91 (159)
Q Consensus        13 ~~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~~~~~~~~~~~~~   91 (159)
                      .+||.||  |..    +  +.++|++|||||   +|||+||||.|.| +++||||||+|++||+|+++.++     ++++
T Consensus        28 ~~yR~iD--R~~----~--i~g~V~~IeyDP---nRsA~IAlv~y~dg~k~yIlAp~gl~vGd~I~sg~~a-----~i~~   91 (240)
T 1vq8_A           28 LEHRKVE--DGD----V--IAGTVVDIEHDP---ARSAPVAAVEFEDGDRRLILAPEGVGVGDELQVGVSA-----EIAP   91 (240)
T ss_dssp             CCCCCCC--SSS----C--CEEEEEEEEEET---TTTEEEEEEEETTSCEEEECCBTTCBTTCEEEBSTTC-----CSCT
T ss_pred             hhceeee--ccC----C--ccEEEEEEEECC---CCceeEEEEEecCCCEEEEEecCCCccCeEEEECCCc-----cccc
Confidence            4788888  432    1  469999999999   9999999999876 69999999999999999999875     6899


Q ss_pred             CCeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418         92 GDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ  159 (159)
Q Consensus        92 Gn~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~  159 (159)
                      ||+|||.+||+||.|||||++||+||||||||||||+|++||+++++|||||||+|+|+++|+||||+
T Consensus        92 GN~lPL~~IP~GT~IhNIE~~pG~Gg~laRsAGt~A~ii~ke~~~~~vrLPSGe~r~v~~~crAtIG~  159 (240)
T 1vq8_A           92 GNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCRATIGV  159 (240)
T ss_dssp             TCEEEGGGSCTTCEEESBCSSTTSCCCBSCSTTCCEEEEECCSSCEEEECTTSCEEEECTTCEEEESC
T ss_pred             cccccccCCCCCCEEEeEeccCCCCceEEEeCCCeEEEEEecCCEEEEECCCCCEEEEechheeeEEE
Confidence            99999999999999999999999999999999999999999999999999999999999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	159
d1vqoa1	147	b.34.5.3 (A:91-237) C-terminal domain of ribosomal	4e-16
d2j01d1	147	b.34.5.3 (D:127-273) C-terminal domain of ribosoma	4e-15
d1rl2a1	70	b.34.5.3 (A:126-195) C-terminal domain of ribosoma	8e-15
d2qamc1	145	b.34.5.3 (C:125-269) C-terminal domain of ribosoma	5e-14
d2zjra2	95	b.40.4.5 (A:33-127) N-terminal domain of ribosomal	4e-08
d2j01d2	125	b.40.4.5 (D:2-126) N-terminal domain of ribosomal	4e-06
d1rl2a2	66	b.40.4.5 (A:60-125) N-terminal domain of ribosomal	2e-04
d2qamc2	64	b.40.4.5 (C:61-124) N-terminal domain of ribosomal	4e-04

>d1vqoa1 b.34.5.3 (A:91-237) C-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 147

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: C-terminal domain of ribosomal protein L2
domain: C-terminal domain of ribosomal protein L2
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 68.7 bits (168), Expect = 4e-16
 Identities = 23/68 (33%), Positives = 36/68 (52%)

Query: 92  GDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDK 151
           G+  P+  +P G  VC VE  PG+G  +ARA+G +  L+    +  V++LPS     +D 
Sbjct: 1   GNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDP 60

Query: 152 HCMAVVAQ 159
            C A +  
Sbjct: 61  QCRATIGV 68

>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]} Length = 147

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: C-terminal domain of ribosomal protein L2
domain: C-terminal domain of ribosomal protein L2
species: Thermus thermophilus [TaxId: 274]

 Score = 66.0 bits (161), Expect = 4e-15
 Identities = 27/68 (39%), Positives = 37/68 (54%)

Query: 92  GDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDK 151
           G+A P+  +P+G++V  VE  P +GA  ARAAG S  +     D V+L+LPS     V  
Sbjct: 2   GNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGDYVILRLPSGELRKVHG 61

Query: 152 HCMAVVAQ 159
            C A V  
Sbjct: 62  ECYATVGA 69

>d1rl2a1 b.34.5.3 (A:126-195) C-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]} Length = 70

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: C-terminal domain of ribosomal protein L2
domain: C-terminal domain of ribosomal protein L2
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 63.2 bits (154), Expect = 8e-15
 Identities = 21/68 (30%), Positives = 35/68 (51%)

Query: 92  GDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDK 151
           G+A P+  +P+G++V  +E  PG G    RAAG S  ++      V+++L S     +  
Sbjct: 1   GNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRMILG 60

Query: 152 HCMAVVAQ 159
            C A V +
Sbjct: 61  KCRATVGE 68

>d2qamc1 b.34.5.3 (C:125-269) C-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]} Length = 145

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: C-terminal domain of ribosomal protein L2
domain: C-terminal domain of ribosomal protein L2
species: Escherichia coli [TaxId: 562]

 Score = 63.0 bits (153), Expect = 5e-14
 Identities = 23/68 (33%), Positives = 34/68 (50%)

Query: 92  GDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDK 151
           G+  P+  +P+GS V  VE  PG+G   AR+AG    +V      V L+L S     V+ 
Sbjct: 2   GNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEA 61

Query: 152 HCMAVVAQ 159
            C A + +
Sbjct: 62  DCRATLGE 69

>d2zjra2 b.40.4.5 (A:33-127) N-terminal domain of ribosomal protein L2 {Deinococcus radiodurans [TaxId: 1299]} Length = 95

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: N-terminal domain of ribosomal protein L2
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 46.3 bits (110), Expect = 4e-08
 Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 8/80 (10%)

Query: 1  RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
          R+    +GGG K     +   RR  +        +V  I   P    R+A +AL+   D 
Sbjct: 16 RITSRFIGGGHKRLYRIIDFKRRDKSGV----NAKVAAIEYDPN---RSARIALLHYADG 68

Query: 61 LK-LILATENMKAGDILKTS 79
           K  ILA E +  G  +   
Sbjct: 69 EKRYILAPEGLTVGATVNAG 88

>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]} Length = 125

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: N-terminal domain of ribosomal protein L2
species: Thermus thermophilus [TaxId: 274]

 Score = 41.4 bits (97), Expect = 4e-06
 Identities = 23/84 (27%), Positives = 35/84 (41%), Gaps = 8/84 (9%)

Query: 1   RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDF 60
           R+ V   GGG K     + DF+R      P    +V  I   P    R+A +AL+   D 
Sbjct: 47  RITVRFRGGGHKRLYRII-DFKRWDKVGIP---AKVAAIEYDPN---RSARIALLHYVDG 99

Query: 61  LK-LILATENMKAGDILKTSMFIP 83
            K  I+A + ++ G  +      P
Sbjct: 100 EKRYIIAPDGLQVGQQVVAGPDAP 123

>d1rl2a2 b.40.4.5 (A:60-125) N-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]} Length = 66

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: N-terminal domain of ribosomal protein L2
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 35.4 bits (82), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 8/61 (13%)

Query: 20 DFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLK-LILATENMKAGDILKT 78
          DF+R        +  RV  I   P    R+AN+AL+   D  K  I+A +N+K G  + +
Sbjct: 6  DFKRDKDG----IPGRVATIEYDPN---RSANIALINYADGEKRYIIAPKNLKVGMEIMS 58

Query: 79 S 79
           
Sbjct: 59 G 59

>d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]} Length = 64

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: N-terminal domain of ribosomal protein L2
species: Escherichia coli [TaxId: 562]

 Score = 35.1 bits (81), Expect = 4e-04
 Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 8/61 (13%)

Query: 20 DFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGDFLK-LILATENMKAGDILKT 78
          DF+R        +   V ++   P    R+AN+ALV   D  +  ILA + +KAGD +++
Sbjct: 5  DFKRNKDG----IPAVVERLEYDPN---RSANIALVLYKDGERRYILAPKGLKAGDQIQS 57

Query: 79 S 79
           
Sbjct: 58 G 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	159
d1rl2a1	70	C-terminal domain of ribosomal protein L2 {Bacillu	100.0
d2zjra2	95	N-terminal domain of ribosomal protein L2 {Deinoco	99.97
d2qamc1	145	C-terminal domain of ribosomal protein L2 {Escheri	99.97
d2j01d1	147	C-terminal domain of ribosomal protein L2 {Thermus	99.97
d1vqoa1	147	C-terminal domain of ribosomal protein L2 {Archaeo	99.97
d2j01d2	125	N-terminal domain of ribosomal protein L2 {Thermus	99.96
d1vqoa2	90	N-terminal domain of ribosomal protein L2 {Archaeo	99.89
d1rl2a2	66	N-terminal domain of ribosomal protein L2 {Bacillu	99.88
d2qamc2	64	N-terminal domain of ribosomal protein L2 {Escheri	99.84
d1iz6a1	69	Eukaryotic initiation translation factor 5a (eIF5a	86.52
d2dy1a1	103	Elongation factor G (EF-G), domain II {Thermus the	85.12

>d1rl2a1 b.34.5.3 (A:126-195) C-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: C-terminal domain of ribosomal protein L2
domain: C-terminal domain of ribosomal protein L2
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=100.00  E-value=8.9e-36  Score=203.33  Aligned_cols=68  Identities=31%  Similarity=0.544  Sum_probs=67.3

Q ss_pred             CCeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418         92 GDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ  159 (159)
Q Consensus        92 Gn~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~  159 (159)
                      ||++||++||+||.|||||+.||+||||+||||+||+|++|++++++|||||||+|+|+++||||||+
T Consensus         1 GN~~pl~~IP~Gt~I~niE~~pg~ggk~~RsAGt~a~ii~k~~~~~~vkLpSge~r~i~~~c~AtIG~   68 (70)
T d1rl2a1           1 GNALPLENIPVGTLVHNIELKPGRGGQLVRAAGTSAQVLGKEGKYVIVRLASGEVRMILGKCRATVGE   68 (70)
T ss_dssp             TCEEEGGGSCTTCEEESEESSTTSCEEESSSSSCCEEEEEEETTEEEEECTTSCEEEEETTSEEEESC
T ss_pred             CCccchhhCCCCCEEEEEEeeccCCcEEEEccCceEEEEEEeCCeeEEEeCCCCEEEECCcCeEEEee
Confidence            89999999999999999999999999999999999999999999999999999999999999999996

>d2zjra2 b.40.4.5 (A:33-127) N-terminal domain of ribosomal protein L2 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: N-terminal domain of ribosomal protein L2
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.97  E-value=3.3e-32  Score=195.11  Aligned_cols=75  Identities=27%  Similarity=0.329  Sum_probs=68.6

Q ss_pred             CeeEecccCCcccceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeec
Q psy13418          1 RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTS   79 (159)
Q Consensus         1 rit~rhrGGG~K~~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~   79 (159)
                      |||+|||||||||+||+|||+|....    ...++|++|||||   ||||+||||.+.+ +++|||||++|++||+|.++
T Consensus        16 rIT~rhrGGGhKr~yR~IDf~R~~~~----~~~~~V~~IeYDP---nRSa~IALv~y~dG~k~YILap~glkvGd~I~sg   88 (95)
T d2zjra2          16 RITSRFIGGGHKRLYRIIDFKRRDKS----GVNAKVAAIEYDP---NRSARIALLHYADGEKRYILAPEGLTVGATVNAG   88 (95)
T ss_dssp             SBCSCSCCCCCCCBCCCBCCSCCTTT----TCEEEEEEEECCT---TTSSCEEEEEETTSCEEEEECBTTCCTTCEEEBS
T ss_pred             CEEEEEECCcccEEEEEeeehhhccC----CCCEEEEEEEEcC---CCCEEEEEEEcCCCeEEEEEccCCCCCCCEEEEC
Confidence            79999999999999999999986432    2479999999999   9999999999866 89999999999999999999


Q ss_pred             CCC
Q psy13418         80 MFI   82 (159)
Q Consensus        80 ~~~   82 (159)
                      .++
T Consensus        89 ~~a   91 (95)
T d2zjra2          89 PEA   91 (95)
T ss_dssp             SSS
T ss_pred             CCC
Confidence            876

>d2qamc1 b.34.5.3 (C:125-269) C-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: C-terminal domain of ribosomal protein L2
domain: C-terminal domain of ribosomal protein L2
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=2.5e-32  Score=208.89  Aligned_cols=69  Identities=33%  Similarity=0.524  Sum_probs=68.1

Q ss_pred             CCCeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418         91 EGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ  159 (159)
Q Consensus        91 ~Gn~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~  159 (159)
                      +||+|||++||+||.|||||+.||+||+|||||||||+|++|++++++|||||||+++|+++|+||||+
T Consensus         1 pGN~lpL~~IP~Gt~I~NIE~~pg~Ggkl~RsAGt~a~vi~k~~~~~~vkLPSGe~r~i~~~c~ATiG~   69 (145)
T d2qamc1           1 PGNTLPMRNIPVGSTVHNVEMKPGKGGQLARSAGTYVQIVARDGAYVTLRLRSGEMRKVEADCRATLGE   69 (145)
T ss_dssp             TTCCCBTTTSCSSCCCCSBCSSTTSCCCBSCSTTCCCEEEEEETTEEEEECTTSCEEEECSSCBCCSSC
T ss_pred             CcccCcHhhCCCCCeEEEEeccCCCCccEeeecccEEEEEEecCCEEEEEecCcceEEeccccceEecc
Confidence            699999999999999999999999999999999999999999999999999999999999999999995

>d2j01d1 b.34.5.3 (D:127-273) C-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: C-terminal domain of ribosomal protein L2
domain: C-terminal domain of ribosomal protein L2
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=5.7e-32  Score=207.29  Aligned_cols=69  Identities=39%  Similarity=0.582  Sum_probs=68.0

Q ss_pred             CCCeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418         91 EGDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ  159 (159)
Q Consensus        91 ~Gn~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~  159 (159)
                      +||+|||++||+||.|||||+.||+||+||||||+||+|++|++++++|||||||+++|+++|+||||+
T Consensus         1 iGN~lPL~~IP~Gt~I~NIE~~PG~Ggkl~RsAGt~A~Ii~k~~~~~~vkLPSGe~r~i~~~c~AtiG~   69 (147)
T d2j01d1           1 VGNALPLRFIPVGTVVHAVELEPKKGAKLARAAGTSAQIQGREGDYVILRLPSGELRKVHGECYATVGA   69 (147)
T ss_dssp             TTCEEEGGGSCTTCEEESEESSTTSCEEESCSSSCCEEECCCBTTEEEEECTTSCEEEEETTSEEEESC
T ss_pred             CcccccHhhCCCCCEEEEEEecCCCCceEEEeccceEEEEEecCCeEEEEecCCceEEecccceEEEeE
Confidence            599999999999999999999999999999999999999999999999999999999999999999996

>d1vqoa1 b.34.5.3 (A:91-237) C-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: C-terminal domain of ribosomal protein L2
domain: C-terminal domain of ribosomal protein L2
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.97  E-value=9.4e-32  Score=206.26  Aligned_cols=68  Identities=34%  Similarity=0.654  Sum_probs=67.2

Q ss_pred             CCeecCCCCCCCceeeeeEEeCCCCceEEecCCCcEEEEEEeCCEEEEEcCCCcEEEECCCCeeeecC
Q psy13418         92 GDAYPVGALPMGSIVCCVEKFPGEGAHYARAAGNSCTLVRTLHDRVVLQLPSKHEVAVDKHCMAVVAQ  159 (159)
Q Consensus        92 Gn~lpL~~iP~Gt~I~nIE~~pg~Gg~~~RsAGt~a~ii~k~~~~~~vkLPSg~~k~i~~~c~AtIG~  159 (159)
                      ||+|||++||+||.|||||+.||+||||||||||||+|++|++++++|||||||+|+|+++|+||||+
T Consensus         1 Gn~lpL~~IP~Gt~IhNIE~~pg~ggkl~RsAGt~A~ii~k~~~~~~vkLPSGe~r~i~~~c~ATIG~   68 (147)
T d1vqoa1           1 GNTLPLAEIPEGVPVCNVESSPGDGGKFARASGVNAQLLTHDRNVAVVKLPSGEMKRLDPQCRATIGV   68 (147)
T ss_dssp             TCEEEGGGSCTTCEEESBCSSTTSCCCBSCSTTCCEEEEECCSSCEEEECTTSCEEEECTTCEEEESC
T ss_pred             CCccchhhCCCCCEEEEEEecCCCCceEEEecCceEEEEEeccceEEEEecCCceEEEChhcceeeee
Confidence            89999999999999999999999999999999999999999999999999999999999999999995

>d2j01d2 b.40.4.5 (D:2-126) N-terminal domain of ribosomal protein L2 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: N-terminal domain of ribosomal protein L2
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=7.1e-31  Score=196.18  Aligned_cols=76  Identities=25%  Similarity=0.286  Sum_probs=68.6

Q ss_pred             CeeEecccCCcccceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeec
Q psy13418          1 RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTS   79 (159)
Q Consensus         1 rit~rhrGGG~K~~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~   79 (159)
                      |||+||||||||++||+|||+|.+..    ...++|++|||||   ||||+||||.|.| +++|||||++|++||+|.+|
T Consensus        47 rIT~RhrGGGhKr~yR~IDfkR~~k~----~i~~~V~~IeYDP---nRsa~IALv~y~dg~k~YIlap~glkvGd~i~sg  119 (125)
T d2j01d2          47 RITVRFRGGGHKRLYRIIDFKRWDKV----GIPAKVAAIEYDP---NRSARIALLHYVDGEKRYIIAPDGLQVGQQVVAG  119 (125)
T ss_dssp             SBSSTTBCCCCCCCBCCCCCCCGGGT----TCCEEEEECCCCT---TCSSCEEEEEETTSCEEEEECCTTCCTTCEECBS
T ss_pred             cEEEeeecCCceEEEEEEEEEcccCC----CcceEEEEEEecC---CCceEEEEEEeCCCcEEEEEccCCCCCCCEEEEC
Confidence            79999999999999999999995422    1469999999999   9999999999866 89999999999999999999


Q ss_pred             CCCC
Q psy13418         80 MFIP   83 (159)
Q Consensus        80 ~~~~   83 (159)
                      .++|
T Consensus       120 ~~a~  123 (125)
T d2j01d2         120 PDAP  123 (125)
T ss_dssp             SSSC
T ss_pred             CCCC
Confidence            8863

>d1vqoa2 b.40.4.5 (A:1-90) N-terminal domain of ribosomal protein L2 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: N-terminal domain of ribosomal protein L2
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.89  E-value=6.8e-24  Score=150.37  Aligned_cols=75  Identities=24%  Similarity=0.203  Sum_probs=66.6

Q ss_pred             CeeEecccCCcccceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeec
Q psy13418          1 RVVVAGLGGGIKEDIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTS   79 (159)
Q Consensus         1 rit~rhrGGG~K~~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~   79 (159)
                      |+|++|||+|||++++..|+++....    .+.|+|++|||||   ||||+||||.+.| +++||||||||++||+|.+|
T Consensus        11 rgt~~~R~~ghk~~~~~~~~~~~~~~----~i~g~V~~IeyDP---~Rsa~iAlv~~~dg~~~yilApegl~vG~~I~~G   83 (90)
T d1vqoa2          11 RGTSTFRAPSHRYKADLEHRKVEDGD----VIAGTVVDIEHDP---ARSAPVAAVEFEDGDRRLILAPEGVGVGDELQVG   83 (90)
T ss_dssp             TCCGGGSCCGGGCCCCCCCCCCCSSC----CCEEEEEEEEEET---TTTEEEEEEEETTSCEEEECCBTTCBTTCEEEBS
T ss_pred             CCCCEeECCCcCccceeccccccccC----cccEEEEEEEecC---CCCceEEEEEecCCCEEEEECcCCCCCCCEEEEC
Confidence            67899999999999999988764311    2469999999999   9999999999876 89999999999999999999


Q ss_pred             CCC
Q psy13418         80 MFI   82 (159)
Q Consensus        80 ~~~   82 (159)
                      .++
T Consensus        84 ~~a   86 (90)
T d1vqoa2          84 VSA   86 (90)
T ss_dssp             TTC
T ss_pred             CCC
Confidence            886

>d1rl2a2 b.40.4.5 (A:60-125) N-terminal domain of ribosomal protein L2 {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: N-terminal domain of ribosomal protein L2
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.88  E-value=1.5e-23  Score=140.80  Aligned_cols=61  Identities=26%  Similarity=0.281  Sum_probs=55.4

Q ss_pred             ceEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeecCCC
Q psy13418         14 DIHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTSMFI   82 (159)
Q Consensus        14 ~yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~~~~   82 (159)
                      +||.|||+|+...     ..|+|++|||||   ||||+||||.+.| +++|||||+||++||.|.+|.++
T Consensus         1 kYR~IDF~R~k~~-----i~g~V~~IEYDP---nRsa~IAlv~y~dG~k~YILap~gl~vGd~i~sg~~a   62 (66)
T d1rl2a2           1 QYRIIDFKRDKDG-----IPGRVATIEYDP---NRSANIALINYADGEKRYIIAPKNLKVGMEIMSGPDA   62 (66)
T ss_dssp             CCSCBCSSCCCTT-----CCEEEEEEEEEG---GGTEEEEEEEETTSCEEEEECCTTCCTTCEECBSTTC
T ss_pred             CCcEEeeeecCCC-----CCEEEEEEEeCC---CCCeEEEEEEcCCCcEEEEEccCCCCCCCEEEECCCC
Confidence            5999999998542     359999999999   9999999999875 89999999999999999999886

>d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal protein L2 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: N-terminal domain of ribosomal protein L2
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=4.3e-23  Score=137.82  Aligned_cols=60  Identities=30%  Similarity=0.295  Sum_probs=54.7

Q ss_pred             eEEccccccCCCCCCCCcccEEEEEeEcCCCCCcceeEEEeeeCC-ceEEEEeeccceeceeeeecCCC
Q psy13418         15 IHWVHDFRRGPTDDSPPLEERVIQIIPSPAPTVRTANLALVGSGD-FLKLILATENMKAGDILKTSMFI   82 (159)
Q Consensus        15 yR~Id~~r~~~~~~~~~~~~~V~~i~yDp~~~~Rsa~Ialv~~~~-~~~yIla~eg~~~Gd~I~~~~~~   82 (159)
                      ||.|||+|+...     ..|+|++|||||   ||||+||||++.+ +++|||||+||++||.|.+|.++
T Consensus         1 YR~IDF~R~k~~-----i~g~V~~IEYDP---nRsA~IALv~y~dG~k~Yilap~gl~vGd~I~sg~~a   61 (64)
T d2qamc2           1 YRIVDFKRNKDG-----IPAVVERLEYDP---NRSANIALVLYKDGERRYILAPKGLKAGDQIQSGVDA   61 (64)
T ss_dssp             CCCCCSCCCCCS-----CCEECCCCCCCS---SSSSCCBCCCBTTSCCCCBCCBSSCCTTCEECCSSSC
T ss_pred             CCeEeeeECcCC-----CCEEEEEEEeCC---CCCceEEEEEcCCCcEEEEEccCCCCCCCEEEECCCC
Confidence            899999998642     359999999999   9999999999775 89999999999999999999886

>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=86.52  E-value=1.3  Score=27.47  Aligned_cols=54  Identities=19%  Similarity=0.248  Sum_probs=42.1

Q ss_pred             cCCCCCeecCCCCCCCceeeeeEE-eCCC-CceEEecCCCcEEEEEEe---CCEEEEEcCCCcEEEEC
Q psy13418         88 RAKEGDAYPVGALPMGSIVCCVEK-FPGE-GAHYARAAGNSCTLVRTL---HDRVVLQLPSKHEVAVD  150 (159)
Q Consensus        88 ~~~~Gn~lpL~~iP~Gt~I~nIE~-~pg~-Gg~~~RsAGt~a~ii~k~---~~~~~vkLPSg~~k~i~  150 (159)
                      +++.|+..-+..-|  ..|-.+|. +||+ |+.       +.++..++   ++..-..+||++...+|
T Consensus        10 ~lkkG~~i~~~g~p--~~V~e~~~~kpGk~G~a-------~~~~k~k~i~tG~~~e~~~~s~d~vevP   68 (69)
T d1iz6a1          10 KLKPGRYIIIDDEP--CRIVNITVSSPGKHGSA-------KARIEAVGIFDGKVRSIVKPTSAEVDVP   68 (69)
T ss_dssp             GCCTTSEEEETTEE--EEEEEEEECCCCTTSCC-------EEEEEEEETTTCCEEEEEEETTSEEEEE
T ss_pred             HccCCCEEEECCEE--EEEEEEEEEcCCCcCcc-------EEEEEEEEcccCCEEEEEEcCCCEEecc
Confidence            67889888888888  77888877 7787 544       45566664   88899999999988775

>d2dy1a1 b.43.3.1 (A:275-377) Elongation factor G (EF-G), domain II {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Elongation factor G (EF-G), domain II
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=85.12  E-value=1.5  Score=28.94  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=16.9

Q ss_pred             CcccEEEEEeEcCCCCCcceeEEEee
Q psy13418         31 PLEERVIQIIPSPAPTVRTANLALVG   56 (159)
Q Consensus        31 ~~~~~V~~i~yDp~~~~Rsa~Ialv~   56 (159)
                      ++.+.|.+++|||   .+.- |+.++
T Consensus         9 p~~a~Vfk~~~d~---~~G~-i~~~R   30 (103)
T d2dy1a1           9 PPLAKVFKVQVDP---FMGQ-VAYLR   30 (103)
T ss_dssp             SCEEEEEEEEEET---TTEE-EEEEE
T ss_pred             CcEEEEEEEEecC---CCCE-EEEEE
Confidence            3689999999999   7654 46555