Psyllid ID: psy13437

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80
Protein Sequence
MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERIGKD
Secondary Structure (PSIPRED)
cccEEEEEEEEEEccccEEEEEEEEcccEEEEccccccccccccccccccEEEEEEccEEEcccccHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccEEEEEEEEEcccccEEEEEEEEcccccEEcHHHHHcccHHHHcccHHHEEEEEcccccccccccHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFqaiecglanivpvgtdgeyNIILIVERIGKD
Flexible Loop (DISEMBL)
MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLanivpvgtdgeYNIILIVERIGKD
Low Complexity Region (SEG)
MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERIGKD
Disordered region (IsUnstruct)
**GWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERI***
Disordered Region (DISOPRED)
MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERIGKD
Disordered Region (DISEMBL)
MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERIGKD
Disordered Region (DISPRO)
*GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERIGK*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERIGKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	80	2.2.26 [Sep-21-2011]
O88884	854	A-kinase anchor protein 1	yes	N/A	0.85	0.079	0.411	9e-12
O08715	857	A-kinase anchor protein 1	yes	N/A	0.85	0.079	0.411	9e-12
Q92667	903	A-kinase anchor protein 1	yes	N/A	0.85	0.075	0.397	1e-11
Q80VL1	560	Tudor and KH domain-conta	no	N/A	0.762	0.108	0.483	3e-10
Q9Y2W6	561	Tudor and KH domain-conta	no	N/A	0.812	0.115	0.469	3e-10
Q09285	867	KH domain-containing prot	no	N/A	0.812	0.074	0.477	3e-09
Q9BXT4	1180	Tudor domain-containing p	no	N/A	0.712	0.048	0.431	8e-07
A9CPT4	1133	Tudor domain-containing p	N/A	N/A	0.75	0.052	0.409	1e-06
Q58EK5	1175	Tudor domain-containing p	no	N/A	0.725	0.049	0.423	3e-06
Q99MV1	1172	Tudor domain-containing p	no	N/A	0.737	0.050	0.383	1e-05

>sp|O88884|AKAP1_RAT A-kinase anchor protein 1, mitochondrial OS=Rattus norvegicus GN=Akap1 PE=2 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 45/68 (66%)

Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
           G W+RAQ++A        ++++VDYGGY  ++   LRQIR+DF++LPFQ  E  L ++VP
Sbjct: 723 GAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVVP 782

Query: 62  VGTDGEYN 69
           +  D  ++
Sbjct: 783 LSDDDHFS 790

Binds to type I and II regulatory subunits of protein kinase A and anchors them to the cytoplasmic face of the mitochondrial outer membrane.
Rattus norvegicus (taxid: 10116)

>sp|O08715|AKAP1_MOUSE A-kinase anchor protein 1, mitochondrial OS=Mus musculus GN=Akap1 PE=1 SV=4

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 28/68 (41%), Positives = 45/68 (66%)

Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
           G W+RAQ++A        ++++VDYGGY  ++   LRQIR+DF++LPFQ  E  L ++VP
Sbjct: 726 GAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVVP 785

Query: 62  VGTDGEYN 69
           +  D  ++
Sbjct: 786 LSDDDHFS 793

Differentially targeted protein that binds to type I and II regulatory subunits of protein kinase A. Anchors them to the cytoplasmic face of the mitochondrial outer membrane or allows them to reside in the endoplasmic reticulum. Does not contain the classic KDEL endoplasmic reticulum-targeting sequence. This explains how it is able to switch its localization, either being in the endoplasmic reticulum or in the mitochondria depending on which N-terminal part begins the isoform. The longest N-terminal part only present in isoform 2 and isoform 4 acts as a suppressor of mitochondrial targeting and as an activator of recessive endoplasmic reticulum targeting motif.

Mus musculus (taxid: 10090)

>sp|Q92667|AKAP1_HUMAN A-kinase anchor protein 1, mitochondrial OS=Homo sapiens GN=AKAP1 PE=1 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 27/68 (39%), Positives = 46/68 (67%)

Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
           G W+RAQ++A        ++++VDYGGY  ++   LRQIR+DF++LPFQ  E  L +++P
Sbjct: 772 GAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVMP 831

Query: 62  VGTDGEYN 69
           +  D +++
Sbjct: 832 LSDDDQFS 839

Binds to type I and II regulatory subunits of protein kinase A and anchors them to the cytoplasmic face of the mitochondrial outer membrane.

Homo sapiens (taxid: 9606)

>sp|Q80VL1|TDRKH_MOUSE Tudor and KH domain-containing protein OS=Mus musculus GN=Tdrkh PE=1 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/62 (48%), Positives = 39/62 (62%), Gaps = 1/62 (1%)

Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
           G W+RA++L   + N +  + FVD+G         LR +R+DFLSLPFQAIEC LA I P
Sbjct: 368 GSWYRARVLGT-LENGNLDLYFVDFGDNGDCALKDLRALRSDFLSLPFQAIECSLARIAP 426

Query: 62  VG 63
            G
Sbjct: 427 TG 428

Mus musculus (taxid: 10090)

>sp|Q9Y2W6|TDRKH_HUMAN Tudor and KH domain-containing protein OS=Homo sapiens GN=TDRKH PE=1 SV=2

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 40/66 (60%), Gaps = 1/66 (1%)

Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
           G W+RA++L   + N +  + FVD+G         LR +R+DFLSLPFQAIEC LA I P
Sbjct: 368 GSWYRARVLGT-LENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIAP 426

Query: 62  VGTDGE 67
            G   E
Sbjct: 427 SGDQWE 432

Homo sapiens (taxid: 9606)

>sp|Q09285|YQK1_CAEEL KH domain-containing protein C56G2.1 OS=Caenorhabditis elegans GN=C56G2.1/C56G2.2 PE=4 SV=2

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 32/67 (47%), Positives = 38/67 (56%), Gaps = 2/67 (2%)

Query: 3   GWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPV 62
            WFRA  +          VKFVDYGGY  +    LRQIR D +SLPFQ+ E  LA++ PV
Sbjct: 703 AWFRAVTVQYFDETDEVFVKFVDYGGYSKMARQDLRQIRTDLMSLPFQSTEVMLAHVRPV 762

Query: 63  GTDGEYN 69
             DG  N
Sbjct: 763 --DGTTN 767

Caenorhabditis elegans (taxid: 6239)

>sp|Q9BXT4|TDRD1_HUMAN Tudor domain-containing protein 1 OS=Homo sapiens GN=TDRD1 PE=2 SV=2

 Score = 52.4 bits (124), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANI 59
           G W+RA +  + + N   +V FVDYG    +    LR I + FL+LPFQ I C LA+I
Sbjct: 777 GSWYRALVKEI-LPNGHVKVHFVDYGNIEEVTADELRMISSTFLNLPFQGIRCQLADI 833

Plays a central role during spermatogenesis by participating in the repression transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Required for the localization of Piwi proteins to the meiotic nuage. Involved in the piRNA metabolic process by ensuring the entry of correct transcripts into the normal piRNA pool and limiting the entry of cellular transcripts into the piRNA pathway. May act by allowing the recruitment of piRNA biogenesis or loading factors that ensure the correct entry of transcripts and piRNAs into Piwi proteins.

Homo sapiens (taxid: 9606)

>sp|A9CPT4|TDRD1_ORYLA Tudor domain-containing protein 1 OS=Oryzias latipes GN=tdrd1 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 27/66 (40%), Positives = 37/66 (56%), Gaps = 6/66 (9%)

Query: 2   GGWFRAQI--LAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANI 59
           G W+RA +  L  DVV    +V FVD+G  + +    LR I    L LPFQA+ C LA +
Sbjct: 671 GKWYRAMVKELLGDVV----KVNFVDFGHNMIVGKGCLRSITPKLLKLPFQAVRCWLAGV 726

Query: 60  VPVGTD 65
            P G++
Sbjct: 727 KPAGSE 732

Plays a central role during spermatogenesis by participating in the repression transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Required for the localization of Piwi proteins to the meiotic nuage. Involved in the piRNA metabolic process by ensuring the entry of correct transcripts into the normal piRNA pool and limiting the entry of cellular transcripts into the piRNA pathway. May act by allowing the recruitment of piRNA biogenesis or loading factors that ensure the correct entry of transcripts and piRNAs into Piwi proteins.

Oryzias latipes (taxid: 8090)

>sp|Q58EK5|TDRD1_DANRE Tudor domain-containing protein 1 OS=Danio rerio GN=tdrd1 PE=2 SV=2

 Score = 50.4 bits (119), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 25/59 (42%), Positives = 33/59 (55%), Gaps = 1/59 (1%)

Query: 4   WFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPV 62
           W+RA +L V       +V FVDYG    ++ + L+ I    L LPFQAI C LA + PV
Sbjct: 691 WYRAMVLEV-CGEGKARVCFVDYGNSCEVDAAHLKAITQSLLKLPFQAIRCWLAGVEPV 748

Plays a central role during spermatogenesis by participating in the repression transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Required for the localization of Piwi proteins to the meiotic nuage. Involved in the piRNA metabolic process by ensuring the entry of correct transcripts into the normal piRNA pool and limiting the entry of cellular transcripts into the piRNA pathway. May act by allowing the recruitment of piRNA biogenesis or loading factors that ensure the correct entry of transcripts and piRNAs into Piwi proteins.

Danio rerio (taxid: 7955)

>sp|Q99MV1|TDRD1_MOUSE Tudor domain-containing protein 1 OS=Mus musculus GN=Tdrd1 PE=1 SV=2

 Score = 48.1 bits (113), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)

Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
           G W+RA +  + + + + +V FVDYG    + T  L+ I   FL LPFQ ++C L +I P
Sbjct: 771 GNWYRALVKEI-LPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQP 829

Plays a central role during spermatogenesis by participating in the repression transposable elements and prevent their mobilization, which is essential for the germline integrity. Acts via the piRNA metabolic process, which mediates the repression of transposable elements during meiosis by forming complexes composed of piRNAs and Piwi proteins and govern the methylation and subsequent repression of transposons. Required for the localization of Piwi proteins to the meiotic nuage. Involved in the piRNA metabolic process by ensuring the entry of correct transcripts into the normal piRNA pool and limiting the entry of cellular transcripts into the piRNA pathway. May act by allowing the recruitment of piRNA biogenesis or loading factors that ensure the correct entry of transcripts and piRNAs into Piwi proteins.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
241652783	311	A kinase anchor protein, putative [Ixode	0.85	0.218	0.558	1e-15
242010558	714	KH domain-containing protein C56G2.1, pu	0.737	0.082	0.610	6e-15
390346155	671	PREDICTED: uncharacterized protein LOC76	0.862	0.102	0.507	2e-14
427789997	692	Hypothetical protein [Rhipicephalus pulc	0.787	0.091	0.571	2e-14
405950059	744	A kinase anchor protein 1, mitochondrial	0.837	0.090	0.544	2e-14
91090284	536	PREDICTED: similar to a kinase anchor pr	0.787	0.117	0.571	3e-14
170070834	589	a kinase anchor protein [Culex quinquefa	0.812	0.110	0.492	2e-13
195134202	681	GI11050 [Drosophila mojavensis] gi|19390	0.762	0.089	0.539	4e-13
194763815	610	GF20944 [Drosophila ananassae] gi|190618	0.975	0.127	0.455	6e-13
195046542	627	GH24358 [Drosophila grimshawi] gi|193893	0.762	0.097	0.532	1e-12

>gi|241652783|ref|XP_002410418.1| A kinase anchor protein, putative [Ixodes scapularis] gi|215501634|gb|EEC11128.1| A kinase anchor protein, putative [Ixodes scapularis]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/68 (55%), Positives = 48/68 (70%)

Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
           GGWFRA ++        C +KF+DYGGY+ L TS LRQIR+DF+ LPFQA EC LAN+ P
Sbjct: 180 GGWFRALVVGTSEDGEECDIKFLDYGGYMRLATSLLRQIRSDFMMLPFQASECYLANVQP 239

Query: 62  VGTDGEYN 69
            G DG ++
Sbjct: 240 AGEDGVWS 247

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242010558|ref|XP_002426032.1| KH domain-containing protein C56G2.1, putative [Pediculus humanus corporis] gi|212510042|gb|EEB13294.1| KH domain-containing protein C56G2.1, putative [Pediculus humanus corporis]

 Score = 84.7 bits (208), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 47/59 (79%)

Query: 3   GWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
           GW+RAQI+++D  +  C VKFVDYGGY+T+  S LRQIR DF++LPFQA EC LA++ P
Sbjct: 557 GWYRAQIVSMDEDSKICDVKFVDYGGYMTMPVSLLRQIRFDFVNLPFQAAECYLASVKP 615

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|390346155|ref|XP_001199246.2| PREDICTED: uncharacterized protein LOC763319 isoform 1 [Strongylocentrotus purpuratus] gi|390346157|ref|XP_003726488.1| PREDICTED: uncharacterized protein LOC763319 isoform 2 [Strongylocentrotus purpuratus]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 35/69 (50%), Positives = 48/69 (69%)

Query: 1   MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIV 60
           M GW+RAQ++ V        V+F+DYGGY  +E  ALRQIR+DFL LPFQA EC ++NI 
Sbjct: 516 MDGWYRAQVVEVTHETDEVDVRFLDYGGYARVEAYALRQIRSDFLGLPFQATECYMSNIA 575

Query: 61  PVGTDGEYN 69
           P+  D +++
Sbjct: 576 PLPGDADFS 584

Source: Strongylocentrotus purpuratus

Species: Strongylocentrotus purpuratus

Genus: Strongylocentrotus

Family: Strongylocentrotidae

Order: Echinoida

Class: Echinoidea

Phylum: Echinodermata

Superkingdom: Eukaryota

>gi|427789997|gb|JAA60450.1| Hypothetical protein [Rhipicephalus pulchellus]

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 45/63 (71%)

Query: 3   GWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPV 62
           GW+RA ++     +  C VKF+DYGGY+TL TS LRQIR+DF+ LPFQA EC LAN+ P 
Sbjct: 565 GWYRALVVGPSEDSDECDVKFLDYGGYMTLSTSLLRQIRSDFMMLPFQASECYLANVQPA 624

Query: 63  GTD 65
             D
Sbjct: 625 EDD 627

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|405950059|gb|EKC18066.1| A kinase anchor protein 1, mitochondrial [Crassostrea gigas]

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 1   MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIV 60
           + GW+RAQI AV      C +K+VDYGG+  ++ S LRQIR+DF++LPFQA EC +ANI 
Sbjct: 629 LNGWYRAQISAVCEETDECDIKYVDYGGFSRVQGSLLRQIRSDFMTLPFQACECYMANIT 688

Query: 61  PVGTDGEY 68
           P+  D EY
Sbjct: 689 PL-QDEEY 695

Source: Crassostrea gigas

Species: Crassostrea gigas

Genus: Crassostrea

Family: Ostreidae

Order: Ostreoida

Class: Bivalvia

Phylum: Mollusca

Superkingdom: Eukaryota

>gi|91090284|ref|XP_971237.1| PREDICTED: similar to a kinase anchor protein [Tribolium castaneum] gi|270013437|gb|EFA09885.1| hypothetical protein TcasGA2_TC012034 [Tribolium castaneum]

 Score = 82.4 bits (202), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 36/63 (57%), Positives = 46/63 (73%)

Query: 4   WFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVG 63
           W+RA +L+ D  +A+  VKF+D+GGY  +E S LRQIR DF+SLPFQA EC LAN+ PV 
Sbjct: 402 WYRAVVLSTDAESATAYVKFLDFGGYSYIEISKLRQIRGDFMSLPFQAAECFLANVKPVE 461

Query: 64  TDG 66
             G
Sbjct: 462 ETG 464

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170070834|ref|XP_001869726.1| a kinase anchor protein [Culex quinquefasciatus] gi|167866758|gb|EDS30141.1| a kinase anchor protein [Culex quinquefasciatus]

 Score = 79.7 bits (195), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 32/65 (49%), Positives = 46/65 (70%)

Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
           G WFR QI++    +  C VK++DYGGY  +  ++LRQIR DF+++PFQ+IEC L+N+ P
Sbjct: 456 GNWFRVQIVSHSPEDQHCLVKYLDYGGYANVPVTSLRQIRTDFMAVPFQSIECVLSNVKP 515

Query: 62  VGTDG 66
            G  G
Sbjct: 516 SGDSG 520

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195134202|ref|XP_002011526.1| GI11050 [Drosophila mojavensis] gi|193906649|gb|EDW05516.1| GI11050 [Drosophila mojavensis]

 Score = 78.6 bits (192), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 34/63 (53%), Positives = 45/63 (71%), Gaps = 2/63 (3%)

Query: 2   GGWFRAQILAVDV--VNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANI 59
           GGW+R QI+  D   V   C VKF+D+GGY+ +  S LRQIR DF++LPFQA EC L+N+
Sbjct: 552 GGWYRVQIVDNDPNDVEERCVVKFLDFGGYMNVSFSVLRQIRTDFMTLPFQATECILSNV 611

Query: 60  VPV 62
            P+
Sbjct: 612 EPI 614

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194763815|ref|XP_001964028.1| GF20944 [Drosophila ananassae] gi|190618953|gb|EDV34477.1| GF20944 [Drosophila ananassae]

 Score = 78.2 bits (191), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 36/79 (45%), Positives = 53/79 (67%), Gaps = 1/79 (1%)

Query: 2   GGWFRAQILAVDVVNAS-CQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIV 60
           G W+R QI+ VD  +   C V+F+D+GGY+ +  S LRQIRADF+S+PFQA EC L+N+ 
Sbjct: 482 GVWYRVQIVDVDPEDEERCVVRFLDFGGYMNVGFSLLRQIRADFMSVPFQATECILSNVE 541

Query: 61  PVGTDGEYNIILIVERIGK 79
           P+G +       I+ ++ K
Sbjct: 542 PIGDNWSIEAAEILNQLTK 560

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195046542|ref|XP_001992176.1| GH24358 [Drosophila grimshawi] gi|193893017|gb|EDV91883.1| GH24358 [Drosophila grimshawi]

 Score = 77.4 bits (189), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 33/62 (53%), Positives = 45/62 (72%), Gaps = 1/62 (1%)

Query: 2   GGWFRAQILAVDVVNAS-CQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIV 60
           G W+R QI+  D  +   C +KF+D+GGY+ +  SALRQIR DF++LPFQA EC L+NI 
Sbjct: 499 GIWYRVQIVDTDADDVERCLIKFLDFGGYMNVSFSALRQIRTDFMALPFQATECILSNIE 558

Query: 61  PV 62
           P+
Sbjct: 559 PI 560

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	80
FB|FBgn0263987	607	spoon "spoonbill" [Drosophila	0.812	0.107	0.455	1.7e-11
ZFIN|ZDB-GENE-030131-5980	596	akap1a "A kinase (PRKA) anchor	0.85	0.114	0.455	2.1e-11
UNIPROTKB|H9L3I1	367	TDRKH "Uncharacterized protein	0.912	0.198	0.445	1.3e-10
RGD|620826	854	Akap1 "A kinase (PRKA) anchor	0.85	0.079	0.411	2.6e-10
MGI|MGI:104729	857	Akap1 "A kinase (PRKA) anchor	0.85	0.079	0.411	2.6e-10
UNIPROTKB|Q92667	903	AKAP1 "A-kinase anchor protein	0.85	0.075	0.397	3.5e-10
UNIPROTKB|E1BM36	833	AKAP1 "Uncharacterized protein	0.85	0.081	0.397	4e-10
UNIPROTKB|E1BMU6	843	AKAP1 "Uncharacterized protein	0.85	0.080	0.397	4.1e-10
UNIPROTKB|E2RKF9	864	AKAP1 "Uncharacterized protein	0.85	0.078	0.397	4.2e-10
UNIPROTKB|J9P6R4	882	AKAP1 "Uncharacterized protein	0.85	0.077	0.397	4.4e-10

FB|FBgn0263987 spoon "spoonbill" [Drosophila melanogaster (taxid:7227)]

 Score = 167 (63.8 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 31/68 (45%), Positives = 48/68 (70%)

Query:     4 WFRAQILAVDVVNAS-CQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPV 62
             W+R QI+  D  +   C +KF+D+GGY+ +  + LRQIR DF+++PFQ+ EC L+NI P+
Sbjct:   481 WYRVQIVDTDPEDEERCVIKFLDFGGYMNVGFNTLRQIRTDFMNVPFQSTECILSNIEPI 540

Query:    63 GTDGEYNI 70
             G  G ++I
Sbjct:   541 G--GTWSI 546

GO:0008104 "protein localization" evidence=ISS

GO:0051018 "protein kinase A binding" evidence=ISS

GO:0006403 "RNA localization" evidence=IMP

GO:0003723 "RNA binding" evidence=IEA

GO:0046843 "dorsal appendage formation" evidence=IMP

GO:0008298 "intracellular mRNA localization" evidence=IMP

GO:0008069 "dorsal/ventral axis specification, ovarian follicular epithelium" evidence=IMP

GO:0051276 "chromosome organization" evidence=IMP

GO:0060269 "centripetally migrating follicle cell migration" evidence=IMP

GO:0007298 "border follicle cell migration" evidence=IMP

GO:0008070 "maternal determination of dorsal/ventral axis, ovarian follicular epithelium, germ-line encoded" evidence=IMP

GO:0030837 "negative regulation of actin filament polymerization" evidence=IGI;IMP

GO:0006099 "tricarboxylic acid cycle" evidence=IDA

GO:0007616 "long-term memory" evidence=IMP

GO:0005739 "mitochondrion" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

ZFIN|ZDB-GENE-030131-5980 akap1a "A kinase (PRKA) anchor protein 1a" [Danio rerio (taxid:7955)]

 Score = 166 (63.5 bits), Expect = 2.1e-11, P = 2.1e-11
 Identities = 31/68 (45%), Positives = 48/68 (70%)

Query:     3 GWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPV 62
             GW RAQ++  D    +  +++VD GGY T+ ++ LRQIR+DF++LPFQA E  L NI+P+
Sbjct:   471 GWQRAQVIQYDGETGTTHIRYVDSGGYDTVNSTTLRQIRSDFVTLPFQAAEVLLDNIMPL 530

Query:    63 GTDGEYNI 70
               D E+++
Sbjct:   531 PGDEEFSL 538

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|H9L3I1 TDRKH "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 155 (59.6 bits), Expect = 1.3e-10, P = 1.3e-10
 Identities = 33/74 (44%), Positives = 46/74 (62%)

Query:     4 WFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVG 63
             W+RA++L   + N +  + +VD+G        ALR +R+DFLSLPFQAIEC LA IVPVG
Sbjct:   236 WYRARVLGT-LENGNLDLYYVDFGDNGEAPREALRVLRSDFLSLPFQAIECSLAGIVPVG 294

Query:    64 TDGEYNIILIVERI 77
                +   +   ER+
Sbjct:   295 EQWDEAALDAFERL 308

GO:0003723 "RNA binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

RGD|620826 Akap1 "A kinase (PRKA) anchor protein 1" [Rattus norvegicus (taxid:10116)]

 Score = 158 (60.7 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 28/68 (41%), Positives = 45/68 (66%)

Query:     2 GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
             G W+RAQ++A        ++++VDYGGY  ++   LRQIR+DF++LPFQ  E  L ++VP
Sbjct:   723 GAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVVP 782

Query:    62 VGTDGEYN 69
             +  D  ++
Sbjct:   783 LSDDDHFS 790

GO:0003723 "RNA binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005811 "lipid particle" evidence=IDA

GO:0008017 "microtubule binding" evidence=IDA

GO:0010614 "negative regulation of cardiac muscle hypertrophy" evidence=IMP

GO:0010738 "regulation of protein kinase A signaling cascade" evidence=IC

GO:0016021 "integral to membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IDA

GO:0019903 "protein phosphatase binding" evidence=IDA

GO:0019904 "protein domain specific binding" evidence=IMP

GO:0030061 "mitochondrial crista" evidence=IDA

GO:0030346 "protein phosphatase 2B binding" evidence=IDA

GO:0031594 "neuromuscular junction" evidence=IDA

GO:0032869 "cellular response to insulin stimulus" evidence=IEP

GO:0032947 "protein complex scaffold" evidence=IDA

GO:0034237 "protein kinase A regulatory subunit binding" evidence=IDA

GO:0035308 "negative regulation of protein dephosphorylation" evidence=IMP

GO:0045211 "postsynaptic membrane" evidence=IDA

GO:0048487 "beta-tubulin binding" evidence=IDA

GO:0051534 "negative regulation of NFAT protein import into nucleus" evidence=IMP

GO:0070887 "cellular response to chemical stimulus" evidence=IEP

MGI|MGI:104729 Akap1 "A kinase (PRKA) anchor protein 1" [Mus musculus (taxid:10090)]

 Score = 158 (60.7 bits), Expect = 2.6e-10, P = 2.6e-10
 Identities = 28/68 (41%), Positives = 45/68 (66%)

Query:     2 GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
             G W+RAQ++A        ++++VDYGGY  ++   LRQIR+DF++LPFQ  E  L ++VP
Sbjct:   726 GAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVVP 785

Query:    62 VGTDGEYN 69
             +  D  ++
Sbjct:   786 LSDDDHFS 793

GO:0003723 "RNA binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0005759 "mitochondrial matrix" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005811 "lipid particle" evidence=ISO

GO:0008017 "microtubule binding" evidence=ISO

GO:0010614 "negative regulation of cardiac muscle hypertrophy" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=ISO

GO:0019903 "protein phosphatase binding" evidence=ISO

GO:0019904 "protein domain specific binding" evidence=ISO

GO:0030061 "mitochondrial crista" evidence=ISO

GO:0030346 "protein phosphatase 2B binding" evidence=ISO

GO:0031594 "neuromuscular junction" evidence=ISO

GO:0032947 "protein complex scaffold" evidence=ISO

GO:0034237 "protein kinase A regulatory subunit binding" evidence=ISO

GO:0035308 "negative regulation of protein dephosphorylation" evidence=ISO

GO:0045211 "postsynaptic membrane" evidence=ISO

GO:0048487 "beta-tubulin binding" evidence=ISO

GO:0051534 "negative regulation of NFAT protein import into nucleus" evidence=ISO

UNIPROTKB|Q92667 AKAP1 "A-kinase anchor protein 1, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 157 (60.3 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 27/68 (39%), Positives = 46/68 (67%)

Query:     2 GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
             G W+RAQ++A        ++++VDYGGY  ++   LRQIR+DF++LPFQ  E  L +++P
Sbjct:   772 GAWWRAQVVASYEETNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVMP 831

Query:    62 VGTDGEYN 69
             +  D +++
Sbjct:   832 LSDDDQFS 839

GO:0003723 "RNA binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005829 "cytosol" evidence=TAS

GO:0007596 "blood coagulation" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|E1BM36 AKAP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 4.0e-10, P = 4.0e-10
 Identities = 27/68 (39%), Positives = 45/68 (66%)

Query:     2 GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
             G W+RAQ++A        ++++VDYGGY  ++   LRQIR+DF++LPFQ  E  L +++P
Sbjct:   702 GAWWRAQVVAAYEDTNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVMP 761

Query:    62 VGTDGEYN 69
             +  D  ++
Sbjct:   762 LSDDDHFS 769

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E1BMU6 AKAP1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 27/68 (39%), Positives = 45/68 (66%)

Query:     2 GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
             G W+RAQ++A        ++++VDYGGY  ++   LRQIR+DF++LPFQ  E  L +++P
Sbjct:   712 GAWWRAQVVAAYEDTNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVMP 771

Query:    62 VGTDGEYN 69
             +  D  ++
Sbjct:   772 LSDDDHFS 779

GO:0005739 "mitochondrion" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|E2RKF9 AKAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 156 (60.0 bits), Expect = 4.2e-10, P = 4.2e-10
 Identities = 27/68 (39%), Positives = 46/68 (67%)

Query:     2 GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
             G W+RAQ++A    +   ++++VDYGGY  ++   LRQIR+DF++LPFQ  E  L +++P
Sbjct:   733 GAWWRAQVVASYEESNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVMP 792

Query:    62 VGTDGEYN 69
             +  D  ++
Sbjct:   793 LSDDDHFS 800

GO:0005739 "mitochondrion" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|J9P6R4 AKAP1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 156 (60.0 bits), Expect = 4.4e-10, P = 4.4e-10
 Identities = 27/68 (39%), Positives = 46/68 (67%)

Query:     2 GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
             G W+RAQ++A    +   ++++VDYGGY  ++   LRQIR+DF++LPFQ  E  L +++P
Sbjct:   751 GAWWRAQVVASYEESNEVEIRYVDYGGYKRVKVDVLRQIRSDFVTLPFQGAEVLLDSVMP 810

Query:    62 VGTDGEYN 69
             +  D  ++
Sbjct:   811 LSDDDHFS 818

GO:0003723 "RNA binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	80
pfam00567	118	pfam00567, TUDOR, Tudor domain	3e-15
smart00333	57	smart00333, TUDOR, Tudor domain	1e-06
cd04508	48	cd04508, TUDOR, Tudor domains are found in many eu	2e-05

>gnl|CDD|215998 pfam00567, TUDOR, Tudor domain

 Score = 64.3 bits (157), Expect = 3e-15
 Identities = 26/57 (45%), Positives = 37/57 (64%), Gaps = 1/57 (1%)

Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLAN 58
           G W+RA+IL V + +   +V F+DYG   T+  S LR + ++F SLP QAI+C LA 
Sbjct: 63  GKWYRAKIL-VSLDDGLVEVFFIDYGNTETVPLSDLRPLPSEFASLPPQAIKCSLAG 118

Length = 118

>gnl|CDD|197660 smart00333, TUDOR, Tudor domain

 Score = 40.7 bits (96), Expect = 1e-06
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 4  WFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADF 44
          W+RA+I+ VD      +V F+DYG    +  S LRQ+  + 
Sbjct: 18 WYRARIVKVDG-EQLYEVFFIDYGNEEVVPPSDLRQLPEEL 57

Domain of unknown function present in several RNA-binding proteins. 10 copies in the Drosophila Tudor protein. Initial proposal that the survival motor neuron gene product contain a Tudor domain are corroborated by more recent database search techniques such as PSI-BLAST (unpublished). Length = 57

>gnl|CDD|119391 cd04508, TUDOR, Tudor domains are found in many eukaryotic organisms and have been implicated in protein-protein interactions in which methylated protein substrates bind to these domains

 Score = 37.2 bits (87), Expect = 2e-05
 Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 2  GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQ 39
          G W+RA+I ++   +   +V FVDYG    +  S LR 
Sbjct: 12 GKWYRAKITSILS-DGKVEVFFVDYGNTEVVPLSDLRP 48

For example, the Tudor domain of Survival of Motor Neuron (SMN) binds to symmetrically dimethylated arginines of arginine-glycine (RG) rich sequences found in the C-terminal tails of Sm proteins. The SMN protein is linked to spinal muscular atrophy. Another example is the tandem tudor domains of 53BP1, which bind to histone H4 specifically dimethylated at Lys20 (H4-K20me2). 53BP1 is a key transducer of the DNA damage checkpoint signal. Length = 48

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	80
2diq_A	110	Solution Structure Of The Tudor Domain Of Tudor And		1e-09
3fdr_A	94	Crystal Structure Of Tdrd2 Length = 94		2e-08
4b9x_A	226	Structure Of Extended Tudor Domain Td3 From Mouse T		2e-06
4b9w_A	201	Structure Of Extended Tudor Domain Td3 From Mouse T		3e-06

>pdb|2DIQ|A Chain A, Solution Structure Of The Tudor Domain Of Tudor And Kh Domain Containing Protein Length = 110

Iteration: 1
 Score = 58.2 bits (139), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
           G W+RA++L   + N +  + FVD+G         LR +R+DFLSLPFQAIEC LA I  
Sbjct: 47  GSWYRARVLGT-LENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIAS 105
Query: 62  VGTDG 66
             + G
Sbjct: 106 GPSSG 110

>pdb|3FDR|A Chain A, Crystal Structure Of Tdrd2 Length = 94

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 1/54 (1%)
Query: 2  GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECG 55
          G W+RA++L   + N +  + FVD+G         LR +R+DFLSLPFQAIEC 
Sbjct: 42 GSWYRARVLGT-LENGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS 94

>pdb|4B9X|A Chain A, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1 Length = 226

Iteration: 1
 Score = 47.0 bits (110), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
           G W+RA +  + + + + +V FVDYG    + T  L+ I   FL LPFQ ++C L +I P
Sbjct: 80  GNWYRALVKEI-LPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQP 138

>pdb|4B9W|A Chain A, Structure Of Extended Tudor Domain Td3 From Mouse Tdrd1 In Complex With Mili Peptide Containing Dimethylarginine 45. Length = 201

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
           G W+RA +  + + + + +V FVDYG    + T  L+ I   FL LPFQ ++C L +I P
Sbjct: 80  GNWYRALVKEI-LPSGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQP 138

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	80
2diq_A	110	Tudor and KH domain-containing protein; tudor doma	6e-21
3fdr_A	94	Tudor and KH domain-containing protein; TDRD2, str	3e-18
3ntk_A	169	Maternal protein tudor; tudor domain, OB-fold, GER	2e-15
3bdl_A	570	Staphylococcal nuclease domain-containing protein	2e-14
3pnw_C	77	Tudor domain-containing protein 3; FAB, structural	2e-11
2d9t_A	78	Tudor domain-containing protein 3; structural geno	6e-10
2hqx_A	246	P100 CO-activator tudor domain; human P100 tudor d	7e-10
2wac_A	218	CG7008-PA; unknown function, tudor, beta-barrel, n	1e-09
3s6w_A	54	Tudor domain-containing protein 3; methylated argi	4e-08
1g5v_A	88	SurviVal motor neuron protein 1; mRNA processing,	2e-07
4a4f_A	64	SurviVal of motor neuron-related-splicing factor;	3e-06
1mhn_A	59	SurviVal motor neuron protein; SMN, SMA, spinal mu	6e-06

>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1 Length = 110

 Score = 78.3 bits (193), Expect = 6e-21
 Identities = 29/65 (44%), Positives = 38/65 (58%), Gaps = 1/65 (1%)

Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
           G W+RA++L     N +  + FVD+G         LR +R+DFLSLPFQAIEC LA I  
Sbjct: 47  GSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIAS 105

Query: 62  VGTDG 66
             + G
Sbjct: 106 GPSSG 110

>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} Length = 94

 Score = 71.0 bits (174), Expect = 3e-18
 Identities = 25/53 (47%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 2  GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIEC 54
          G W+RA++L     N +  + FVD+G         LR +R+DFLSLPFQAIEC
Sbjct: 42 GSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIEC 93

>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A* Length = 169

 Score = 65.7 bits (160), Expect = 2e-15
 Identities = 17/78 (21%), Positives = 27/78 (34%), Gaps = 3/78 (3%)

Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
             ++RAQI  V   +  C+V F+D+G          RQ+  +       +  C L     
Sbjct: 62  EVFYRAQIRKVLD-DGKCEVHFIDFGNNAVT--QQFRQLPEELAKPARYSRHCELDASTI 118

Query: 62  VGTDGEYNIILIVERIGK 79
              D       I  R  +
Sbjct: 119 SKCDAALLQSFIDTRFSE 136

>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens} Length = 570

 Score = 65.3 bits (158), Expect = 2e-14
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLS--LPFQAIECGLANI 59
           G W+RA++  V+   A   V ++DYG    L ++ L  +   F +  LP QA E   A I
Sbjct: 425 GEWYRARVEKVES-PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFI 483

Query: 60  -VPVGTD 65
            VP   D
Sbjct: 484 QVPQDDD 490

>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens} Length = 77

 Score = 53.3 bits (128), Expect = 2e-11
 Identities = 12/45 (26%), Positives = 24/45 (53%)

Query: 2  GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLS 46
            ++RA++ A+     +  VKF+DYG Y  +  S ++ I+ +   
Sbjct: 32 NKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTEAWE 76

>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1 Length = 78

 Score = 49.5 bits (118), Expect = 6e-10
 Identities = 11/47 (23%), Positives = 23/47 (48%)

Query: 2  GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLP 48
            ++RA++ A+     +  VKF DYG Y  +  S ++ ++ +     
Sbjct: 24 NKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTEAWVRD 70

>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B Length = 246

 Score = 52.0 bits (124), Expect = 7e-10
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLS--LPFQAIECGLANI 59
           G W+RA++  V+   A   V ++DYG    L ++ L  +   F +  LP QA E   A I
Sbjct: 79  GEWYRARVEKVES-PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFI 137

Query: 60  VP 61
             
Sbjct: 138 QV 139

>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster} Length = 218

 Score = 50.9 bits (121), Expect = 1e-09
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 2   GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVP 61
             W+RA++  V    ++  V ++DYG   TL T+ L  +   F S    A E  LA +  
Sbjct: 66  NQWYRAKVERVQ--GSNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVAL 123

>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A* Length = 54

 Score = 44.2 bits (105), Expect = 4e-08
 Identities = 12/39 (30%), Positives = 22/39 (56%)

Query: 2  GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQI 40
            ++RA++ A+     +  VKF+DYG Y  +  S ++ I
Sbjct: 16 NKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI 54

>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1 Length = 88

 Score = 43.4 bits (102), Expect = 2e-07
 Identities = 11/52 (21%), Positives = 19/52 (36%)

Query: 2  GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIE 53
          G  + A I ++D    +C V +  YG       S L     +  +   Q  +
Sbjct: 25 GCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICEVANNIEQNAQ 76

>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A* Length = 64

 Score = 39.3 bits (92), Expect = 3e-06
 Identities = 9/39 (23%), Positives = 16/39 (41%)

Query: 2  GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQI 40
          G  + A+I  +D  N +  + F  YG         L+ +
Sbjct: 23 GQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPV 61

>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A* Length = 59

 Score = 38.6 bits (90), Expect = 6e-06
 Identities = 10/42 (23%), Positives = 16/42 (38%)

Query: 2  GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRAD 43
          G  + A I ++D    +C V +  YG       S L     +
Sbjct: 18 GCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE 59

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	80
4b9w_A	201	TDRD1, tudor domain-containing protein 1; replicat	99.95
4b9x_A	226	TDRD1, tudor domain-containing protein 1; replicat	99.95
2diq_A	110	Tudor and KH domain-containing protein; tudor doma	99.92
2wac_A	218	CG7008-PA; unknown function, tudor, beta-barrel, n	99.91
3ntk_A	169	Maternal protein tudor; tudor domain, OB-fold, GER	99.9
2hqx_A	246	P100 CO-activator tudor domain; human P100 tudor d	99.89
3fdr_A	94	Tudor and KH domain-containing protein; TDRD2, str	99.89
3bdl_A	570	Staphylococcal nuclease domain-containing protein	99.88
2eqk_A	85	Tudor domain-containing protein 4; structural geno	99.74
1mhn_A	59	SurviVal motor neuron protein; SMN, SMA, spinal mu	99.72
2d9t_A	78	Tudor domain-containing protein 3; structural geno	99.72
3pnw_C	77	Tudor domain-containing protein 3; FAB, structural	99.69
3s6w_A	54	Tudor domain-containing protein 3; methylated argi	99.69
4a4f_A	64	SurviVal of motor neuron-related-splicing factor;	99.68
1g5v_A	88	SurviVal motor neuron protein 1; mRNA processing,	99.67
2equ_A	74	PHD finger protein 20-like 1; tudor domain, struct	99.32
2ldm_A	81	Uncharacterized protein; PHF20, tudor domain, epig	98.84
3p8d_A	67	Medulloblastoma antigen MU-MB-50.72; tudor domain,	98.69
3qii_A	85	PHD finger protein 20; tudor domain, structural ge	98.67
2dig_A	68	Lamin-B receptor; tudor domain, integral nuclear e	98.27
2l8d_A	66	Lamin-B receptor; DNA binding protein; NMR {Gallus	98.07
2bud_A	92	Males-absent on the first protein; transferase, MO	97.24
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	97.08
2ro0_A	92	Histone acetyltransferase ESA1; HAT, chromodomain,	96.21
2f5k_A	102	MORF-related gene 15 isoform 1; beta barrel, gene	95.9
2eko_A	87	Histone acetyltransferase htatip; chromo domain, h	95.84
2rnz_A	94	Histone acetyltransferase ESA1; HAT, chromodomain,	95.8
4hcz_A	58	PHD finger protein 1; protein-peptide complex, tud	95.47
2lcc_A	76	AT-rich interactive domain-containing protein 4A;	95.39
1wgs_A	133	MYST histone acetyltransferase 1; tudor domain, MY	95.35
3h8z_A	128	FragIle X mental retardation syndrome-related Pro;	95.25
2eqj_A	66	Metal-response element-binding transcription facto	94.44
2e5p_A	68	Protein PHF1, PHD finger protein 1; tudor domain,	93.46
2lrq_A	85	Protein MRG15, NUA4 complex subunit EAF3 homolog;	91.44
2e5q_A	63	PHD finger protein 19; tudor domain, isoform B, st	92.17
3dlm_A	213	Histone-lysine N-methyltransferase setdb1; setdb1_	92.06
2m0o_A	79	PHD finger protein 1; tudor domain, H3K36ME3 bindi	90.57
2qqr_A	118	JMJC domain-containing histone demethylation prote	89.83
2g3r_A	123	Tumor suppressor P53-binding protein 1; tandem tud	89.63
3db3_A	161	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	89.2
3ask_A	226	E3 ubiquitin-protein ligase UHRF1; histone reader	88.65
3m9q_A	101	Protein MALE-specific lethal-3; chromodomain, MSL3	87.76
2eqm_A	88	PHD finger protein 20-like 1; structural genomics,	86.37
4eqp_A	143	Thermonuclease; staphylococcal nuclease, hyperstab	84.84
3m9p_A	110	MALE-specific lethal 3 homolog; chromodomain, MSL3	83.72
1ssf_A	156	Transformation related protein 53 binding protein	83.48
2xdp_A	123	Lysine-specific demethylase 4C; oxidoreductase, hi	82.45

>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}

Probab=99.95  E-value=4.1e-28  Score=157.42  Aligned_cols=75  Identities=32%  Similarity=0.600  Sum_probs=69.7

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCCCcceeEEEecceEeCCCCCCCCHHHHHhhhcc
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERIGK   79 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~lP~qA~~c~L~~v~p~~~~~~Ws~~a~~~~f~~   79 (80)
                      ||.||||+|+++.+ ++.+.|+||||||++.|+.++||+||++|..+|+||++|+|+||+|.  +..|+++| ++.|++
T Consensus        79 d~~wyRa~V~~~~~-~~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea-~~~f~~  153 (201)
T 4b9w_A           79 DGNWYRALVKEILP-SGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEA-TARFQA  153 (201)
T ss_dssp             TTEEEEEEEEEECT-TSCEEEEETTTCCEEEECGGGEEECCGGGGSSCBCCEEEEESSEECS--SSSCCHHH-HHHHHH
T ss_pred             CCeEEEEEEEEECC-CCeEEEEEEccCCEEEEEHHHhccChHhHcccchhhEEEEEcCEEcC--CCCCCHHH-HHHHHH
Confidence            78999999999975 46799999999999999999999999999999999999999999998  57899999 888864

>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}

Probab=99.95  E-value=7e-28  Score=158.73  Aligned_cols=75  Identities=32%  Similarity=0.600  Sum_probs=69.9

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCCCcceeEEEecceEeCCCCCCCCHHHHHhhhcc
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERIGK   79 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~lP~qA~~c~L~~v~p~~~~~~Ws~~a~~~~f~~   79 (80)
                      ||.||||+|+++.. ++.+.|+||||||++.|+.++||+||++|..+|+||++|+|+||+|.  +..|+++| +++|++
T Consensus        79 d~~WyRa~V~~~~~-~~~~~V~~vDyGn~~~v~~~~l~~l~~~f~~lP~qA~~c~L~~v~p~--~~~w~~ea-~~~f~~  153 (226)
T 4b9x_A           79 DGNWYRALVKEILP-SGNVKVHFVDYGNVEEVTTDQLQAILPQFLLLPFQGMQCWLVDIQPP--NKHWTKEA-TARFQA  153 (226)
T ss_dssp             TTEEEEEEEEEECS-SSEEEEECTTTCCEEEEEGGGEECCCGGGSSSCBCCEEEEESSEECS--SSSCCHHH-HHHHHH
T ss_pred             CCeEEEEEEEEECC-CCeEEEEEEecCCEEEEEHHHhccChHHHcccccceEEEEEecEECC--CCCCCHHH-HHHHHH
Confidence            78999999999975 46899999999999999999999999999999999999999999998  57899999 888864

>2diq_A Tudor and KH domain-containing protein; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=99.92  E-value=1.5e-26  Score=138.29  Aligned_cols=63  Identities=44%  Similarity=0.753  Sum_probs=59.4

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCCCcceeEEEecceEeCCC
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGT   64 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~lP~qA~~c~L~~v~p~~~   64 (80)
                      ||.||||+|+++.. ++.+.|+||||||++.|+.++||+||++|..+|+||++|+|++|+|..+
T Consensus        46 d~~wyRA~V~~~~~-~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~lP~qA~~c~L~~v~p~~~  108 (110)
T 2diq_A           46 NGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARIASGPS  108 (110)
T ss_dssp             TCSCEEEEECCCCS-SSCEEEEETTTCCEEEECGGGCEECCHHHHSSCCSSCCSCSSCSCCSCC
T ss_pred             CCeEEEEEEEEECC-CCeEEEEEEeCCCeEEEehHHhhcCcHHHhCCCcceEEEEECCeEECCC
Confidence            78999999999975 3689999999999999999999999999999999999999999999864

>2wac_A CG7008-PA; unknown function, tudor, beta-barrel, nuclease domain, tudor P100, SND1, methylated arginine, SDMA, splicing; 2.10A {Drosophila melanogaster}

Probab=99.91  E-value=8.8e-25  Score=141.86  Aligned_cols=75  Identities=27%  Similarity=0.334  Sum_probs=69.9

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCCCcceeEEEecceEeCCCCCCCCHHHHHhhhcc
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERIGK   79 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~lP~qA~~c~L~~v~p~~~~~~Ws~~a~~~~f~~   79 (80)
                      ||.||||+|+++..  +.+.|+|||||+++.|+.++||+||++|..+|+||++|+|+||+|+. +..|+++| .+.|++
T Consensus        65 d~~wyRa~V~~v~~--~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~~p~~a~~~~Lagv~~p~-~~~w~~eA-~~~l~~  139 (218)
T 2wac_A           65 DNQWYRAKVERVQG--SNATVLYIDYGNKETLPTNRLAALPPAFSSEKPYATEYALALVALPT-DNEDKEEA-LRAFSE  139 (218)
T ss_dssp             TCCEEEEEEEEEET--TEEEEEETTTCCEEEEEGGGEEECCGGGSSSCCSEEEEEETTEECCS-SHHHHHHH-HHHHHH
T ss_pred             CCeEEEEEEEEecC--CeEEEEEEecCCeEEEchHHcccCChhhccCCcceeEEEECCEECCC-CcchHHHH-HHHHHH
Confidence            68999999999984  79999999999999999999999999999999999999999999876 67899999 888764

>3ntk_A Maternal protein tudor; tudor domain, OB-fold, GERM cell formation, transcription; 1.80A {Drosophila melanogaster} PDB: 3nth_A* 3nti_A*

Probab=99.90  E-value=1e-24  Score=138.50  Aligned_cols=71  Identities=23%  Similarity=0.331  Sum_probs=63.8

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCCCcceeEEEecceEeCCCCCCCCHHHHHhhhcc
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERIGK   79 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~lP~qA~~c~L~~v~p~~~~~~Ws~~a~~~~f~~   79 (80)
                      ||.||||+|+++..+ +.+.|+||||||++.  .++||+||++|..+|+||++|+|+|++|+..    +.+| .+.|++
T Consensus        61 d~~wyRa~I~~~~~~-~~~~V~fvDyGn~~~--v~~lr~l~~~f~~lP~qA~~c~L~~v~~~~~----~~ea-~~~f~~  131 (169)
T 3ntk_A           61 DEVFYRAQIRKVLDD-GKCEVHFIDFGNNAV--TQQFRQLPEELAKPARYSRHCELDASTISKC----DAAL-LQSFID  131 (169)
T ss_dssp             TTEEEEEEEEEECST-TCEEEEETTTTEEEE--ESCEECCCHHHHSSCCSSEEEEECGGGSCHH----HHHH-HHHHHH
T ss_pred             CCcEEEEEEEEECCC-CEEEEEEEecCCeEE--hhhhhccCHHHhhCCceeEEEEECCcCCCCC----hHHH-HHHHHH
Confidence            789999999999863 589999999999999  4899999999999999999999999998852    8888 888764

>2hqx_A P100 CO-activator tudor domain; human P100 tudor domain, proteolytic fragment, PSI, structural genomics; 1.42A {Homo sapiens} SCOP: b.34.9.1 PDB: 2hqe_A 3omc_A* 3omg_A* 2o4x_A 2e6n_A 2o4x_B

Probab=99.89  E-value=9.4e-24  Score=139.83  Aligned_cols=76  Identities=29%  Similarity=0.444  Sum_probs=47.0

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhc--CCCcceeEEEecceEeCCCCCCCCHHHHHhhhc
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFL--SLPFQAIECGLANIVPVGTDGEYNIILIVERIG   78 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~--~lP~qA~~c~L~~v~p~~~~~~Ws~~a~~~~f~   78 (80)
                      ||.||||+|+++.. ++.+.|+||||||++.|+.++||+||++|.  .+|+||++|+|++++|+. +..|..+| .+.|.
T Consensus        78 d~~wyRa~V~~~~~-~~~~~V~~vDyGn~~~v~~~~lr~l~~~~~~~~lp~~a~~~~L~~v~~p~-~~~~~~eA-~~~l~  154 (246)
T 2hqx_A           78 DGEWYRARVEKVES-PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQ-DDDARTDA-VDSVV  154 (246)
T ss_dssp             TSCEEEEEEEEEEE-TTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC---------------------------
T ss_pred             CCCEEEEEEEEEcC-CCeEEEEEEeCCCeEEEeHHHhhcCCHhHcCCCCchhhhhhhhhceecCC-CccchHHH-HHHHH
Confidence            78999999999975 369999999999999999999999999998  689999999999999876 46799999 77765


Q ss_pred             c
Q psy13437         79 K   79 (80)
Q Consensus        79 ~   79 (80)
                      +
T Consensus       155 ~  155 (246)
T 2hqx_A          155 R  155 (246)
T ss_dssp             -
T ss_pred             H
Confidence            3

>3fdr_A Tudor and KH domain-containing protein; TDRD2, structural genomics, structural genomics consortium, SGC, alternative splicing, RNA-binding; 1.75A {Homo sapiens} SCOP: b.34.9.1

Probab=99.89  E-value=9.9e-24  Score=122.89  Aligned_cols=54  Identities=46%  Similarity=0.830  Sum_probs=50.4

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCCCcceeEEE
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECG   55 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~lP~qA~~c~   55 (80)
                      ||.||||+|+++.. ++.+.|+||||||++.|+.++||+||++|..+|+||++|+
T Consensus        41 d~~wyRA~I~~~~~-~~~~~V~fvDyGn~e~v~~~~lr~l~~~f~~lP~qA~~Cs   94 (94)
T 3fdr_A           41 NGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECS   94 (94)
T ss_dssp             TTEEEEEEEEEECT-TSCEEEEETTTCCEEEECGGGCEECCGGGGCSCCCCCCC-
T ss_pred             CCeEEEEEEEEECC-CCeEEEEEEcCCCeEEEEHHHhhhcCHHHhcCCcceEEeC
Confidence            78999999999974 4689999999999999999999999999999999999995

>3bdl_A Staphylococcal nuclease domain-containing protein 1; staphylococcal nuclease OB fold, tudor domain, cytoplasm, HOST-virus interaction, nucleus; HET: CIT; 1.90A {Homo sapiens}

Probab=99.88  E-value=2.8e-23  Score=151.04  Aligned_cols=76  Identities=28%  Similarity=0.428  Sum_probs=70.5

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCC--CcceeEEEecceEeCCCCCCCCHHHHHhhhc
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSL--PFQAIECGLANIVPVGTDGEYNIILIVERIG   78 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~l--P~qA~~c~L~~v~p~~~~~~Ws~~a~~~~f~   78 (80)
                      ||.||||+|+++.. .+.+.|+||||||++.|+.++||+||++|..+  |+||++|+|++|+|+. +..|+++| ++.|+
T Consensus       424 d~~wyRa~I~~v~~-~~~~~V~fvDyGn~e~v~~~~Lr~l~~~f~~l~lP~qA~~c~La~v~pp~-~~~w~~ea-~~~f~  500 (570)
T 3bdl_A          424 DGEWYRARVEKVES-PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQ-DDDARTDA-VDSVV  500 (570)
T ss_dssp             TSCEEEEEEEEEEE-TTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCCEEEEETTEECCS-SHHHHHHH-HHHHH
T ss_pred             CCCEEEEEEEEEcC-CCeEEEEEEeCCCeEEEEHHHCccCCHHHhcCCCCcceEEEEECCeEcCC-CCCCcHHH-HHHHH
Confidence            78999999999986 47999999999999999999999999999976  9999999999999876 67999999 88886


Q ss_pred             c
Q psy13437         79 K   79 (80)
Q Consensus        79 ~   79 (80)
                      +
T Consensus       501 ~  501 (570)
T 3bdl_A          501 R  501 (570)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2eqk_A Tudor domain-containing protein 4; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.74  E-value=2.1e-18  Score=98.68  Aligned_cols=51  Identities=20%  Similarity=0.331  Sum_probs=46.6

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCCCccee
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAI   52 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~lP~qA~   52 (80)
                      ||+||||+|+++..+ +.++|+|+|||+.++|+.++||+|+++|..++.+|+
T Consensus        35 ~n~WyRakV~~v~~~-~~veVl~~DyGn~~~V~~~~LR~L~~~l~~~~~~~~   85 (85)
T 2eqk_A           35 KNQWRRGQIIRMVTD-TLVEVLLYDVGVELVVNVDCLRKLEENLKTMGRLSL   85 (85)
T ss_dssp             SCCEEEEEEEEECSS-SEEEEECTTTCCEEEEETTTEEECCHHHHTCSSCCC
T ss_pred             CCeEEEEEEEEecCC-CeEEEEEEccCCEEEEEccccccCCHHHhhhhhccC
Confidence            579999999999974 679999999999999999999999999999988763

>1mhn_A SurviVal motor neuron protein; SMN, SMA, spinal muscular atrophy, RNA binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 PDB: 4a4e_A* 4a4g_A*

Probab=99.72  E-value=5.2e-18  Score=91.40  Aligned_cols=43  Identities=23%  Similarity=0.353  Sum_probs=39.4

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchh
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRAD   43 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~   43 (80)
                      ||.||||+|+++..+++.+.|+|+||||++.|+.++||+||++
T Consensus        17 Dg~wYrA~I~~i~~~~~~~~V~f~DYGn~e~v~~~~Lr~~~~~   59 (59)
T 1mhn_A           17 DGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICE   59 (59)
T ss_dssp             TSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTCC
T ss_pred             CCCEEEEEEEEEcCCCCEEEEEEEcCCCEEEEcHHHeeCCCCC
Confidence            7999999999998655899999999999999999999999853

>2d9t_A Tudor domain-containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.34.9.1

Probab=99.72  E-value=5.5e-18  Score=95.95  Aligned_cols=46  Identities=24%  Similarity=0.463  Sum_probs=41.9

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcC
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLS   46 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~   46 (80)
                      ||.||||+|+++..+++.+.|+||||||++.|+.++||+||+++.+
T Consensus        23 Dg~wYRA~I~~i~~~~~~~~V~fiDYGN~e~V~~~~Lr~l~~~ll~   68 (78)
T 2d9t_A           23 DNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTEAWV   68 (78)
T ss_dssp             TCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCCCCC
T ss_pred             CCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEcHHHeEeCCHHHhh
Confidence            7899999999998645799999999999999999999999988754

>3pnw_C Tudor domain-containing protein 3; FAB, structural genomics consortium, antibody, SGC, protein immune system complex; 2.05A {Homo sapiens}

Probab=99.69  E-value=2.1e-17  Score=93.38  Aligned_cols=43  Identities=28%  Similarity=0.556  Sum_probs=37.6

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchh
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRAD   43 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~   43 (80)
                      ||.||||+|+++..+++.+.|+|+||||++.|+.++||+||.+
T Consensus        31 Dg~wYRA~I~~i~~~~~~~~V~fvDYGN~e~V~~~~Lr~l~~~   73 (77)
T 3pnw_C           31 DNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPIQTE   73 (77)
T ss_dssp             TTEEEEEEEEEECTTSSEEEEEETTTCCEEEEEGGGEECC---
T ss_pred             CCCEEEEEEEEEeCCCCEEEEEEEcCCCeEEEeHHHeEECChh
Confidence            7999999999998655799999999999999999999999876

>3s6w_A Tudor domain-containing protein 3; methylated arginine recognize, ISO-propanol, transcri; 1.78A {Homo sapiens} PDB: 3pmt_A*

Probab=99.69  E-value=2e-17  Score=87.64  Aligned_cols=40  Identities=30%  Similarity=0.558  Sum_probs=35.5

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccccc
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQI   40 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l   40 (80)
                      ||.||||+|+++..+++.+.|+|+||||.+.|+.++||+|
T Consensus        15 Dg~wYrA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lrpi   54 (54)
T 3s6w_A           15 DNKFYRAEVEALHSSGMTAVVKFIDYGNYEEVLLSNIKPI   54 (54)
T ss_dssp             TTEEEEEEEEEC--CCSEEEEEETTTCCEEEEEGGGEECC
T ss_pred             CCCEEEEEEEEEeCCCCEEEEEEEccCCeEEEeHHHEEEC
Confidence            7999999999997655789999999999999999999986

>4a4f_A SurviVal of motor neuron-related-splicing factor; RNA binding protein; HET: 2MR; NMR {Homo sapiens} PDB: 4a4h_A*

Probab=99.68  E-value=4.4e-17  Score=89.08  Aligned_cols=42  Identities=21%  Similarity=0.376  Sum_probs=38.9

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccch
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRA   42 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~   42 (80)
                      ||.||||+|+++..+++.+.|+|+||||.+.|+.++||+|++
T Consensus        22 Dg~wYrA~I~~v~~~~~~~~V~fvdYGn~e~V~~~~Lrpl~~   63 (64)
T 4a4f_A           22 DGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEE   63 (64)
T ss_dssp             TSSEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGEECCSC
T ss_pred             CCCEEEEEEEEEcCCCCEEEEEEEecCCEEEEeHHHcEeCCC
Confidence            799999999999965579999999999999999999999874

>1g5v_A SurviVal motor neuron protein 1; mRNA processing, translation; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=99.67  E-value=7.4e-17  Score=93.17  Aligned_cols=47  Identities=21%  Similarity=0.301  Sum_probs=38.8

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCC
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSL   47 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~l   47 (80)
                      ||.||||+|+++...++.+.|+|+||||.+.|+.++|++++..|..-
T Consensus        24 Dg~wYrA~I~~i~~~~~~~~V~fiDYGN~E~V~~~~Lrp~~~~~~~~   70 (88)
T 1g5v_A           24 DGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPICEVANN   70 (88)
T ss_dssp             TCCEEEEEEEEEETTTTEEEEEETTTCCEEEEEGGGCBCCC------
T ss_pred             CCCEEEEEEEEecCCCCEEEEEEecCCCEEEEcHHHcccCChhhccc
Confidence            79999999999986458999999999999999999999999988653

>2equ_A PHD finger protein 20-like 1; tudor domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.32  E-value=2.4e-12  Score=72.02  Aligned_cols=45  Identities=18%  Similarity=0.197  Sum_probs=40.3

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCC
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSL   47 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~l   47 (80)
                      ||.||||+|+++..+ +.+.|.|+|| +.++|+.++|++||++....
T Consensus        22 Dg~~Y~A~I~~v~~~-~~~~V~f~Dy-n~e~v~~~~lrplp~~~k~~   66 (74)
T 2equ_A           22 DCRYYPAKIEAINKE-GTFTVQFYDG-VIRCLKRMHIKAMPEDAKGQ   66 (74)
T ss_dssp             SSSEEEEEEEEESTT-SSEEEEETTS-CEEEECGGGEECCCGGGTCC
T ss_pred             CCCEEEEEEEEECCC-CEEEEEEecC-CeEEecHHHCeeCChhHhhc
Confidence            799999999999863 6899999999 99999999999999876543

>2ldm_A Uncharacterized protein; PHF20, tudor domain, epigenetics, methylated P53, transcript factor, transcription-protein binding complex; HET: M2L; NMR {Homo sapiens}

Probab=98.84  E-value=1.3e-12  Score=74.23  Aligned_cols=42  Identities=24%  Similarity=0.375  Sum_probs=38.1

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhh
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADF   44 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f   44 (80)
                      ||.||||+|+++.. ++.+.|+|+| ||.++|+.++|++||.+-
T Consensus        19 Dg~wY~A~I~~v~~-~~~y~V~F~D-Gn~E~V~~s~LrPl~~~~   60 (81)
T 2ldm_A           19 DSRFYPAKVTAVNK-DGTYTVKFYD-GVVQTVKHIHVKAFSKDQ   60 (81)
Confidence            79999999999975 3689999999 999999999999999753

>3p8d_A Medulloblastoma antigen MU-MB-50.72; tudor domain, lysine-methylated P53 binding, histone binding binding; 2.00A {Homo sapiens}

Probab=98.69  E-value=3.4e-08  Score=54.06  Aligned_cols=41  Identities=24%  Similarity=0.344  Sum_probs=36.7

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchh
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRAD   43 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~   43 (80)
                      |+.||-|+|+++..+ +.+.|.|.| |++++|..++|+++|.+
T Consensus        19 D~~yYpA~I~si~~~-~~Y~V~F~d-G~~etvk~~~ikp~~~~   59 (67)
T 3p8d_A           19 DCRFYPAKVTAVNKD-GTYTVKFYD-GVVQTVKHIHVKAFSKD   59 (67)
T ss_dssp             TSCEEEEEEEEECTT-SEEEEEETT-SCEEEEEGGGEEECC--
T ss_pred             CCCEeeEEEEEECCC-CeEEEEEeC-CceEEEeHHHcccCCcc
Confidence            789999999999964 689999999 99999999999999975

>3qii_A PHD finger protein 20; tudor domain, structural genomics, structural GE consortium, SGC, transcription regulator; 2.30A {Homo sapiens}

Probab=98.67  E-value=4e-08  Score=56.01  Aligned_cols=42  Identities=24%  Similarity=0.316  Sum_probs=36.8

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhh
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADF   44 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f   44 (80)
                      |+.||-|+|+++..+ +.+.|.|-| |++++|...+|+++|.+-
T Consensus        34 D~~yYPAkI~sV~~~-~~YtV~F~D-G~~etvk~~~IKp~~~~~   75 (85)
T 3qii_A           34 DCRFYPAKVTAVNKD-GTYTVKFYD-GVVQTVKHIHVKAFSKDQ   75 (85)
T ss_dssp             TSCEEEEEEEEECTT-SEEEEEETT-SCEEEEEGGGEEECC---
T ss_pred             CCCEeeEEEEEECCC-CeEEEEEeC-CCeEEecHHHcccCChhh
Confidence            789999999999974 689999999 999999999999999753

>2dig_A Lamin-B receptor; tudor domain, integral nuclear envelope inner membrane protein, nuclear protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.34.9.1

Probab=98.27  E-value=1.8e-06  Score=46.80  Aligned_cols=41  Identities=22%  Similarity=0.354  Sum_probs=38.4

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccch
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRA   42 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~   42 (80)
                      |+.+|-|+|+++...+..+.|.|-| |.++.+..++|+++|.
T Consensus        26 d~~yYparItSits~~~~Y~VkfKd-gT~e~L~~kDIKp~~~   66 (68)
T 2dig_A           26 SSLYYEVEILSHDSTSQLYTVKYKD-GTELELKENDIKSGPS   66 (68)
T ss_dssp             TCCEEEEEEEEEETTTTEEEEECTT-SCEEEEETTTEECCCC
T ss_pred             CccceEEEEEEeccCCceEEEEecC-CCEEEechhccccCCC
Confidence            6789999999999877899999999 9999999999999985

>2l8d_A Lamin-B receptor; DNA binding protein; NMR {Gallus gallus}

Probab=98.07  E-value=1e-05  Score=43.64  Aligned_cols=40  Identities=25%  Similarity=0.313  Sum_probs=37.1

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccc
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIR   41 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~   41 (80)
                      |+.+|-|+|+++...+..+.|.|-| |.++.+..++|++++
T Consensus        23 d~~yYparI~Si~s~~~~Y~V~fKd-gT~e~L~~kDIkp~~   62 (66)
T 2l8d_A           23 SVLYYEVQVTSYDDASHLYTVKYKD-GTELALKESDIRLQS   62 (66)
T ss_dssp             SSCEEEEEEEEEETTTTEEEEEETT-SCEEEEEGGGEECSS
T ss_pred             CccceEEEEEEeccCCceEEEEecC-CCEEeechhccccch
Confidence            6789999999999877899999999 999999999999883

>2bud_A Males-absent on the first protein; transferase, MOF, HAT, acetyl-transfer, dosage compensation complex, DCC, royal family; NMR {Drosophila melanogaster} SCOP: b.34.13.3

Probab=97.24  E-value=0.00086  Score=38.53  Aligned_cols=45  Identities=16%  Similarity=0.110  Sum_probs=38.2

Q ss_pred             CCcEEEEEEEEEecC-----CCEEEEEEeeeCCe--EEEccccccccchhhc
Q psy13437          1 MGGWFRAQILAVDVV-----NASCQVKFVDYGGY--LTLETSALRQIRADFL   45 (80)
Q Consensus         1 D~~wyRa~I~~~~~~-----~~~~~V~~vDyG~~--~~v~~~~lr~l~~~f~   45 (80)
                      |+.||+|+|+++...     ...+.|+|.+|-..  |.|+.++|....+++.
T Consensus        27 dg~~yeAeIl~ir~~~~~~~~~~YYVHY~g~NkRlDEWV~~~RL~~~~~~~g   78 (92)
T 2bud_A           27 DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRISDNADDLG   78 (92)
T ss_dssp             TSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTEESCHHHHH
T ss_pred             CCCEEEEEEEEEeeccCCCCCcEEEEEeCCcccccccccCHHHhchhcccCC
Confidence            589999999998752     23899999999885  9999999999998853

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=97.08  E-value=0.00066  Score=41.16  Aligned_cols=39  Identities=13%  Similarity=0.365  Sum_probs=33.4

Q ss_pred             cEEEEEEEEEecCCCEEEEEEeeeCC--eEEEccccccccchh
Q psy13437          3 GWFRAQILAVDVVNASCQVKFVDYGG--YLTLETSALRQIRAD   43 (80)
Q Consensus         3 ~wyRa~I~~~~~~~~~~~V~~vDyG~--~~~v~~~~lr~l~~~   43 (80)
                      .|+.|+|.++.  ++.+.|.|.+|+.  .|+|+.++||++++.
T Consensus        80 gWw~a~I~~~k--g~f~~V~y~~~~~~~~EiV~~~rlR~~n~~  120 (128)
T 3h8z_A           80 GWWLARVRMMK--GDFYVIEYAACDATYNEIVTLERLRPVNPN  120 (128)
T ss_dssp             EEEEEEEEEEE--TTEEEEEETTC----CEEECGGGEEECCCC
T ss_pred             ccEEEEEEEee--CCEEEEEEcCCCCCcceEEehhheEeCCCC
Confidence            59999999998  5899999999998  699999999999863

>2ro0_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.0094  Score=34.11  Aligned_cols=38  Identities=18%  Similarity=0.220  Sum_probs=32.2

Q ss_pred             CCcEEEEEEEEEec--CCCEEEEEEeeeCCe--EEEcccccc
Q psy13437          1 MGGWFRAQILAVDV--VNASCQVKFVDYGGY--LTLETSALR   38 (80)
Q Consensus         1 D~~wyRa~I~~~~~--~~~~~~V~~vDyG~~--~~v~~~~lr   38 (80)
                      ++.||.|+|+++..  +...+.|+|++|-..  |.|+.++|.
T Consensus        35 ~~~~y~AkIl~ir~~~~~~~YyVHY~g~NkRlDEWV~~~rl~   76 (92)
T 2ro0_A           35 NDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRIN   76 (92)
T ss_dssp             TTEEEEEEEEEEECSSSSCEEEEEETTSCTTSCEEEEGGGEE
T ss_pred             CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHhHcc
Confidence            58899999999874  235899999999985  889999885

>2f5k_A MORF-related gene 15 isoform 1; beta barrel, gene regulation; 2.20A {Homo sapiens} SCOP: b.34.13.3 PDB: 2efi_A

Probab=95.90  E-value=0.013  Score=34.11  Aligned_cols=43  Identities=7%  Similarity=0.051  Sum_probs=33.9

Q ss_pred             CCcEEEEEEEEEecC--CCEEEEEEeeeCCe--EEEccccccccchh
Q psy13437          1 MGGWFRAQILAVDVV--NASCQVKFVDYGGY--LTLETSALRQIRAD   43 (80)
Q Consensus         1 D~~wyRa~I~~~~~~--~~~~~V~~vDyG~~--~~v~~~~lr~l~~~   43 (80)
                      ++.||.|+|+++...  ...+.|+|.+|...  |.|+.+.|+...++
T Consensus        34 ~~~~YeAkIl~v~~~~~~~~Y~VHY~GwNkR~DEWV~~~Rl~k~t~e   80 (102)
T 2f5k_A           34 GPLLYEAKCVKVAIKDKQVKYFIHYSGWNKNWDEWVPESRVLKYVDT   80 (102)
T ss_dssp             SSSEEEEEEEEEEEETTEEEEEEEETTSCGGGCEEEEGGGEEESSHH
T ss_pred             CCEEEEEEEEEEEEcCCCcEEEEEeCCcCCCceeeccHhhcccCCHH
Confidence            478999999998742  24789999999874  89999888866543

>2eko_A Histone acetyltransferase htatip; chromo domain, histone tail, chromatin organization modifier, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.84  E-value=0.0094  Score=33.78  Aligned_cols=39  Identities=21%  Similarity=0.242  Sum_probs=32.3

Q ss_pred             CCcEEEEEEEEEec--CCCEEEEEEeeeCCe--EEEccccccc
Q psy13437          1 MGGWFRAQILAVDV--VNASCQVKFVDYGGY--LTLETSALRQ   39 (80)
Q Consensus         1 D~~wyRa~I~~~~~--~~~~~~V~~vDyG~~--~~v~~~~lr~   39 (80)
                      ++.||.|+|+++..  ....+.|+|++|-..  |.|+.++|..
T Consensus        26 ~~~~y~AkIl~i~~~~~~~~YyVHY~g~NkRlDEWV~~~rl~~   68 (87)
T 2eko_A           26 EDEWPLAEILSVKDISGRKLFYVHYIDFNRRLDEWVTHERLDL   68 (87)
T ss_dssp             CEECCEEEEEEECCSSSCCCEEEEECSSCSCCCEEECTTTBCG
T ss_pred             CCeEEEEEEEEEEEcCCCcEEEEEeCCCCcccccccCHhHccc
Confidence            46899999999875  235899999999885  8999999863

>2rnz_A Histone acetyltransferase ESA1; HAT, chromodomain, tudor domain, RNA binding, activator, chromatin regulator, transcription; NMR {Saccharomyces cerevisiae}

Probab=95.80  E-value=0.016  Score=33.27  Aligned_cols=38  Identities=18%  Similarity=0.220  Sum_probs=32.0

Q ss_pred             CCcEEEEEEEEEec--CCCEEEEEEeeeCCe--EEEcccccc
Q psy13437          1 MGGWFRAQILAVDV--VNASCQVKFVDYGGY--LTLETSALR   38 (80)
Q Consensus         1 D~~wyRa~I~~~~~--~~~~~~V~~vDyG~~--~~v~~~~lr   38 (80)
                      ++.||.|+|+++..  +...+.|+|++|-..  |.|+.++|.
T Consensus        37 ~~~~yeAeIl~ir~~~g~~~YYVHY~g~NkRlDEWV~~~RI~   78 (94)
T 2rnz_A           37 NDEERLAEILSINTRKAPPKFYVHYVNYNKRLDEWITTDRIN   78 (94)
T ss_dssp             SSCEEEEEEEEEECSSSSCEEEEECTTSCSTTCEEEETTTBC
T ss_pred             CCEEEEEEEEEEEEcCCCcEEEEEeCCcCcccccccCHHHcc
Confidence            58999999999874  235899999999874  899999985

>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}

Probab=95.47  E-value=0.058  Score=28.29  Aligned_cols=39  Identities=21%  Similarity=0.266  Sum_probs=32.1

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccccc
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQI   40 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l   40 (80)
                      ||.+|=|.|+++....+.+.|.|-| |....+.+++|..+
T Consensus        16 DG~fYlGtI~~V~~~~~~clV~F~D-~s~~W~~~kdi~~~   54 (58)
T 4hcz_A           16 DGLLYLGTIKKVDSAREVCLVQFED-DSQFLVLWKDISPA   54 (58)
T ss_dssp             TSCEEEEEEEEEETTTTEEEEEETT-SCEEEEEGGGEEEC
T ss_pred             CCCEEeEEEEEEecCCCEEEEEEcC-CCeEEEEhHHcccc
Confidence            7999999999999866799999877 55667888887754

>2lcc_A AT-rich interactive domain-containing protein 4A; chromobarrel domain, RBBP1, transcription; NMR {Homo sapiens}

Probab=95.39  E-value=0.018  Score=31.73  Aligned_cols=42  Identities=7%  Similarity=0.050  Sum_probs=32.6

Q ss_pred             CcEEEEEEEEEecCC--CEEEEEEeeeCCe--EEEccccccccchh
Q psy13437          2 GGWFRAQILAVDVVN--ASCQVKFVDYGGY--LTLETSALRQIRAD   43 (80)
Q Consensus         2 ~~wyRa~I~~~~~~~--~~~~V~~vDyG~~--~~v~~~~lr~l~~~   43 (80)
                      +.||.|+|+++...+  ..+.|+|.+|...  |.|+.++|.....+
T Consensus        22 ~~~y~AkIl~i~~~~~~~~Y~VHY~gwnkr~DEWV~~~ri~~~~~~   67 (76)
T 2lcc_A           22 QKIYEASIKSTEIDDGEVLYLVHYYGWNVRYDEWVKADRIIWPLDK   67 (76)
T ss_dssp             EEEEEEEEEEEEEETTEEEEEEEETTSCCSSCEEEEGGGEECSSCS
T ss_pred             CCEEEEEEEEEEccCCceEEEEEeCCcCCCceEecChhhccccccc
Confidence            589999999987532  2689999998874  88999988755443

>1wgs_A MYST histone acetyltransferase 1; tudor domain, MYST family, struct genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: b.34.13.3

Probab=95.35  E-value=0.014  Score=35.39  Aligned_cols=38  Identities=16%  Similarity=0.301  Sum_probs=31.1

Q ss_pred             CCcEEEEEEEEEec----CCCEEEEEEeeeCCe--EEEcccccc
Q psy13437          1 MGGWFRAQILAVDV----VNASCQVKFVDYGGY--LTLETSALR   38 (80)
Q Consensus         1 D~~wyRa~I~~~~~----~~~~~~V~~vDyG~~--~~v~~~~lr   38 (80)
                      |+.||.|+|+++..    +...+.|+|.+|-..  |.|+.+.|.
T Consensus        25 d~~~y~AkIl~i~~~~~~~~~~YyVHY~gwNkR~DEWV~~~ri~   68 (133)
T 1wgs_A           25 DSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLA   68 (133)
T ss_dssp             TTEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSC
T ss_pred             CCCEEEEEEEEEEeccCCCceEEEEeccCcCCCceeecChhhcc
Confidence            57999999999763    234789999988874  899999985

>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*

Probab=95.25  E-value=0.035  Score=33.51  Aligned_cols=40  Identities=13%  Similarity=0.199  Sum_probs=31.6

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeee-CCeEEEccccccccch
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDY-GGYLTLETSALRQIRA   42 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDy-G~~~~v~~~~lr~l~~   42 (80)
                      +|.||-|.|..+.  .+.+.|.|-+- --.+.|+.+++|..|+
T Consensus        14 ~G~~y~a~V~~v~--~d~~~V~f~n~w~~~~~vp~~~vRlpP~   54 (128)
T 3h8z_A           14 NGAFYKGFVKDVH--EDSVTIFFENNWQSERQIPFGDVRLPPP   54 (128)
T ss_dssp             TSCEEEEEEEEEC--SSEEEEEETTCTTCCEEEEGGGEECCCC
T ss_pred             CCCEEEEEEEEEe--CCcEEEEEccccCcceEechhhEEcCCC
Confidence            4899999999986  47888888542 3357999999998764

>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}

Probab=94.44  E-value=0.067  Score=28.78  Aligned_cols=37  Identities=16%  Similarity=0.300  Sum_probs=29.2

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccc
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALR   38 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr   38 (80)
                      ||.+|-|.|+++....+.+.|.|-| |....+.+++|.
T Consensus        26 DGl~Y~gtI~~V~~~~gtC~V~F~D-~s~~w~~~kdi~   62 (66)
T 2eqj_A           26 DGLFYLGTIKKINILKQSCFIIFED-SSKSWVLWKDIQ   62 (66)
T ss_dssp             TSCEEEEEEEEEETTTTEEEEEETT-TEEEEEETTTEE
T ss_pred             cCcEEEeEEEEEccCCcEEEEEEcc-CCEEEEEeeccc
Confidence            7999999999999766899999877 444456666654

>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=93.46  E-value=0.13  Score=27.62  Aligned_cols=39  Identities=21%  Similarity=0.266  Sum_probs=30.1

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccccc
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQI   40 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l   40 (80)
                      ||.+|-+.|.++......+.|.|-| +....+.+++|..+
T Consensus        22 DGlfYlGtV~kV~~~~~~ClV~FeD-~s~~wv~~kdi~~~   60 (68)
T 2e5p_A           22 DGLLYLGTIKKVDSAREVCLVQFED-DSQFLVLWKDISPA   60 (68)
T ss_dssp             TSSEEEEEEEEEETTTTEEEEEETT-TEEEEEETTTEECC
T ss_pred             CCcEEEeEEEEEecCCcEEEEEEcc-CCeeeeeeeccccc
Confidence            7899999999999766788888876 33445777777654

>2lrq_A Protein MRG15, NUA4 complex subunit EAF3 homolog; epigenetics, LID complex, transcription; NMR {Drosophila melanogaster}

Probab=91.44  E-value=0.026  Score=31.73  Aligned_cols=42  Identities=7%  Similarity=0.125  Sum_probs=33.1

Q ss_pred             CcEEEEEEEEEec--CCCEEEEEEeeeCCe--EEEccccccccchh
Q psy13437          2 GGWFRAQILAVDV--VNASCQVKFVDYGGY--LTLETSALRQIRAD   43 (80)
Q Consensus         2 ~~wyRa~I~~~~~--~~~~~~V~~vDyG~~--~~v~~~~lr~l~~~   43 (80)
                      +.||.|+|+++..  +...+.|+|.+|...  |.|+.+.|....++
T Consensus        25 ~~~y~AkIl~i~~~~~~~~YyVHY~GwNkR~DEWV~~~Rl~k~t~e   70 (85)
T 2lrq_A           25 PLIYEAKVLKTKPDATPVEYYIHYAGWSKNWDEWVPENRVLKYNDD   70 (85)
Confidence            5799999999864  235799999999874  78998888766554

>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=92.17  E-value=0.24  Score=26.25  Aligned_cols=39  Identities=21%  Similarity=0.280  Sum_probs=30.5

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccccc
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQI   40 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l   40 (80)
                      ||.+|=|.|.++......+.|.|-| +....+.+++|..+
T Consensus        20 DGlfYlgtV~kV~~~~~~ClV~FeD-~s~~wv~~kdi~~~   58 (63)
T 2e5q_A           20 DGLYYLGKIKRVSSSKQSCLVTFED-NSKYWVLWKDIQHA   58 (63)
T ss_dssp             TSCEEEEEECCCCSTTSEEEEEETT-SCEEEEEGGGEECC
T ss_pred             CCCEEEEEEEEEecCCCEEEEEEcc-CceeEEEeeccccc
Confidence            7899999999998766788888877 34456777777654

>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}

Probab=92.06  E-value=0.36  Score=31.42  Aligned_cols=48  Identities=17%  Similarity=0.235  Sum_probs=32.9

Q ss_pred             CCcEEEEEEEEEec--CCCEEEEEEeeeCCeEEEcccccccc-chhhcCCCc
Q psy13437          1 MGGWFRAQILAVDV--VNASCQVKFVDYGGYLTLETSALRQI-RADFLSLPF   49 (80)
Q Consensus         1 D~~wyRa~I~~~~~--~~~~~~V~~vDyG~~~~v~~~~lr~l-~~~f~~lP~   49 (80)
                      ++.||||+|+++..  .+..+.|.|-+=|. ..++.+.|..- .+....+|.
T Consensus        21 ~~~W~rg~v~~I~~~~~g~~YkVkF~~~g~-~ivs~~hiA~~~~p~~~~l~v   71 (213)
T 3dlm_A           21 TKTWHKGTLIAIQTVGPGKKYKVKFDNKGK-SLLSGNHIAYDYHPPADKLYV   71 (213)
T ss_dssp             TSBEEEEEEEEEEEETTEEEEEEEESSSCE-EEECGGGEEESSCCCGGGCCT
T ss_pred             CCcEEEEEEEEEEECCCCeEEEEEEcCCCC-EEeecceEEEecCCCccEEeE
Confidence            47899999999875  23468899887665 46777776652 334444553

>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}

Probab=90.57  E-value=0.25  Score=27.25  Aligned_cols=37  Identities=22%  Similarity=0.289  Sum_probs=29.3

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccc
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALR   38 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr   38 (80)
                      ||.+|=|.|+++....+.+.|.|-| |....+.+++|.
T Consensus        39 DGlfYLGTI~kV~~~~e~ClV~F~D-~S~~W~~~kdi~   75 (79)
T 2m0o_A           39 DGLLYLGTIKKVDSAREVCLVQFED-DSQFLVLWKDIS   75 (79)
T ss_dssp             TSCCCEEEEEEEETTTTEEEEEETT-SCEEEEETTTBC
T ss_pred             CCCEEeEEEEEeccCCCEEEEEEcC-CCeEEEEeeccc
Confidence            7999999999999767788888866 445567777764

>2qqr_A JMJC domain-containing histone demethylation protein 3A; histone lysine demethylase, tandem hybrid tudor domains, metal binding protein; 1.80A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2qqs_A* 2gfa_A* 2gf7_A*

Probab=89.83  E-value=0.85  Score=27.05  Aligned_cols=41  Identities=12%  Similarity=0.174  Sum_probs=32.0

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccch
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRA   42 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~   42 (80)
                      +|.+|||+|+++.. ...+.|.|-|=-.+..++.++|-..+.
T Consensus        18 ngryy~~~V~~~~~-~~~y~V~F~DgS~s~dl~peDIvs~dc   58 (118)
T 2qqr_A           18 NGRFYQCEVVRLTT-ETFYEVNFDDGSFSDNLYPEDIVSQDC   58 (118)
T ss_dssp             TSSEEEEEEEEEEE-EEEEEEEETTSCEEEEECGGGBCSSCH
T ss_pred             CCCEEeEEEEEEee-EEEEEEEcCCCCccCCCCHhhcccccc
Confidence            57899999999875 356778877766667888888877764

>2g3r_A Tumor suppressor P53-binding protein 1; tandem tudor domains, cell cycle-transcription complex; 1.25A {Homo sapiens} SCOP: b.34.9.1 b.34.9.1 PDB: 2ig0_A* 3lgf_A* 3lgl_A* 3lh0_A* 1xni_A

Probab=89.63  E-value=2.1  Score=25.49  Aligned_cols=38  Identities=16%  Similarity=0.139  Sum_probs=30.3

Q ss_pred             CcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccc---ccc
Q psy13437          2 GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALR---QIR   41 (80)
Q Consensus         2 ~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr---~l~   41 (80)
                      +.||-++|++... ++.++|.| |-|....+..++|-   +||
T Consensus        19 ~~yYpG~V~~~~~-~~ky~V~F-dDg~~~~v~~k~iiv~d~ip   59 (123)
T 2g3r_A           19 GYFYSGKITRDVG-AGKYKLLF-DDGYECDVLGKDILLCDPIP   59 (123)
T ss_dssp             CCEEEEEEEEEEE-TTEEEEEE-TTSCEEEEEGGGEECCSSCC
T ss_pred             CcCcccEEEEecc-CCeEEEEE-cCCCeeEeecceEEEecccC
Confidence            4799999998654 57899988 44888888888877   666

>3db3_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, tandem tudor domains, LI metal binding, DNA replication; HET: M3L; 2.40A {Homo sapiens} PDB: 3db4_A 2l3r_A*

Probab=89.20  E-value=0.77  Score=28.63  Aligned_cols=39  Identities=28%  Similarity=0.518  Sum_probs=28.8

Q ss_pred             CcEEEEEEEEEec------------------CCCEEEEEEeeeCCeEE--Ecccccccc
Q psy13437          2 GGWFRAQILAVDV------------------VNASCQVKFVDYGGYLT--LETSALRQI   40 (80)
Q Consensus         2 ~~wyRa~I~~~~~------------------~~~~~~V~~vDyG~~~~--v~~~~lr~l   40 (80)
                      |.|+-|+|+++..                  ++-.++|.|=||.....  ++..++|+=
T Consensus        25 GAWFEA~Iv~Vtr~~~~~~~p~~s~~~~~~~edviYhVkyddype~gvv~~~~~~iRpR   83 (161)
T 3db3_A           25 GAWFEAQVVRVTRKAPSRDEPCSSTSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRAR   83 (161)
T ss_dssp             CCEEEEEEEEEEEC-----------------CCEEEEEEESSCGGGCEEEEEGGGEECC
T ss_pred             CcceEEEEEEEEecCCCCCCcccccccCCCcCceEEEEEeccCccCCeEecchhccccc
Confidence            8999999999764                  12367899999977654  556677753

>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}

Probab=88.65  E-value=0.71  Score=30.25  Aligned_cols=41  Identities=29%  Similarity=0.523  Sum_probs=28.9

Q ss_pred             CCcEEEEEEEEEec---------CCCEEEEEEeeeCCeEE--Eccccccccc
Q psy13437          1 MGGWFRAQILAVDV---------VNASCQVKFVDYGGYLT--LETSALRQIR   41 (80)
Q Consensus         1 D~~wyRa~I~~~~~---------~~~~~~V~~vDyG~~~~--v~~~~lr~l~   41 (80)
                      .|.||.|+|+++.+         ++-.+.|.|=||...+.  +...++|+--
T Consensus        16 ~Gawfea~i~~v~~~~~~~~~~~d~~~y~v~y~~~~~~~~~~~~~~~irpra   67 (226)
T 3ask_A           16 MGAWFEAQVVRVTRKAPSRPALEEDVIYHVKYDDYPENGVVQMNSRDVRARA   67 (226)
T ss_dssp             TCCEEEEEEEEEEECC------CCCEEEEEEETTCGGGCEEEEEGGGEEECC
T ss_pred             CCceeEEEEEEEeccccccCCCCCceEEEeecccCcccCceecccccccccc
Confidence            48999999999875         22356788888866544  5566776543

>3m9q_A Protein MALE-specific lethal-3; chromodomain, MSL3, methyllysine recognition, aromatic CAGE, complex, transcription upregulation; 1.29A {Drosophila melanogaster} SCOP: b.34.13.0

Probab=87.76  E-value=0.88  Score=26.25  Aligned_cols=42  Identities=10%  Similarity=0.112  Sum_probs=32.0

Q ss_pred             CcEEEEEEEEEecC-------CCEEEEEEeeeCCe--EEEccccccccchh
Q psy13437          2 GGWFRAQILAVDVV-------NASCQVKFVDYGGY--LTLETSALRQIRAD   43 (80)
Q Consensus         2 ~~wyRa~I~~~~~~-------~~~~~V~~vDyG~~--~~v~~~~lr~l~~~   43 (80)
                      +.+|.|+|+++...       ...+.|+|..+...  |.|+.+.|....++
T Consensus        37 ~~lYeAKIl~v~~~~~~~~~~~~~Y~VHY~GWn~rwDEWV~edRilk~~ee   87 (101)
T 3m9q_A           37 RVLYTSKVLNVFERRNEHGLRFYEYKIHFQGWRPSYDRAVRATVLLKDTEE   87 (101)
T ss_dssp             CCEEEEEEEEEEEEECTTSCEEEEEEEEETTSCGGGCEEECGGGEEECCHH
T ss_pred             CcceEeEEEEEEecCCccccCceEEEEEeCCCCcCceeecCHHHcccCCHH
Confidence            68999999998641       13678888877764  89999988876553

>2eqm_A PHD finger protein 20-like 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2jtf_A

Probab=86.37  E-value=2.4  Score=23.65  Aligned_cols=40  Identities=18%  Similarity=0.297  Sum_probs=31.3

Q ss_pred             CcEEEEEEEEEecCCCEEEEEEeeeCCe--EEEccc--cccccc
Q psy13437          2 GGWFRAQILAVDVVNASCQVKFVDYGGY--LTLETS--ALRQIR   41 (80)
Q Consensus         2 ~~wyRa~I~~~~~~~~~~~V~~vDyG~~--~~v~~~--~lr~l~   41 (80)
                      +.||=|+|+.+...+..+.|+|-.+...  +.++.+  +|+++-
T Consensus        33 ~~~~~a~i~~v~~~~~~v~VHfdGW~~~yDeWv~~dS~~I~P~g   76 (88)
T 2eqm_A           33 QKWYPSRIEKIDYEEGKMLVHFERWSHRYDEWIYWDSNRLRPLE   76 (88)
T ss_dssp             SCEEEEEEEEEETTTTEEEEEESSSTTTEEEEEETTSCCEECCC
T ss_pred             CCeeEEEEEEEeccCCEEEEEECCCCCcccEEeeCCCCcEeccc
Confidence            6899999998886568999999888874  667765  666553

>4eqp_A Thermonuclease; staphylococcal nuclease, hyperstable, PDTP, ionizable group, hydrolase; HET: THP; 1.35A {Staphylococcus aureus} PDB: 3ero_A* 2rbm_A* 3d8g_A* 3bdc_A* 4f8m_A* 3lx0_A* 3nqt_A* 3nk9_A* 3pmf_A* 3sr1_A* 3t13_A* 3mxp_A* 3r3o_A* 4df7_A* 3np8_A* 3nxw_A* 3oso_A* 3mz5_A* 3mhb_A* 3dhq_A* ...

Probab=84.84  E-value=4.5  Score=24.12  Aligned_cols=50  Identities=8%  Similarity=-0.047  Sum_probs=33.3

Q ss_pred             cEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCCCcceeEEEecceEeCCCCCCCCHHHHHhhhc
Q psy13437          3 GWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANIVPVGTDGEYNIILIVERIG   78 (80)
Q Consensus         3 ~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~lP~qA~~c~L~~v~p~~~~~~Ws~~a~~~~f~   78 (80)
                      .++.|+|+.+.+ ++++.|.. |                       -+.++++|+||..+.....|..+| .++++
T Consensus         8 ~~~~~~V~~V~D-GDTi~v~~-~-----------------------g~~~~VRL~gIDaPE~~q~~g~~A-~~~l~   57 (143)
T 4eqp_A            8 HKEPATLIKAID-GDTVKLMY-K-----------------------GQPMTFRLLLVDTPEFNEKYGPEA-SAFTK   57 (143)
T ss_dssp             CEEEEEEEEECS-SSEEEEEE-T-----------------------TEEEEEEETTEECCCTTSTTHHHH-HHHHH
T ss_pred             ceeeEEEEEEEC-CCEEEEEe-C-----------------------CcEEEEEEEeecCCCcCCchHHHH-HHHHH
Confidence            467788888875 56776653 1                       124788888888766566777777 66554

>1ssf_A Transformation related protein 53 binding protein 1; tudor domains, tandem, SH3-like fold, beta barrel, alpha- helix, cell cycle; NMR {Mus musculus} SCOP: b.34.9.1 b.34.9.1

Probab=83.48  E-value=1.5  Score=27.12  Aligned_cols=36  Identities=14%  Similarity=0.099  Sum_probs=27.3

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccc
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALR   38 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr   38 (80)
                      ++.||.|+|..... ++.+.|.| |-|....+...+|.
T Consensus        22 ~~yyYpG~V~~~~~-~~~Y~V~F-dDG~~k~v~~~div   57 (156)
T 1ssf_A           22 NGYFYSGKITRDVG-AGKYKLLF-DDGYECDVLGKDIL   57 (156)
T ss_dssp             SSEEEEEEEEECCT-TTEEEEEC-TTSCEEEEETTTEE
T ss_pred             CCcccccEEEEecc-CCEEEEEE-cCCCeeEeeccceE
Confidence            35677999999764 57888877 55888888866655

>2xdp_A Lysine-specific demethylase 4C; oxidoreductase, histone modification; 1.56A {Homo sapiens}

Probab=82.45  E-value=1.2  Score=26.60  Aligned_cols=41  Identities=12%  Similarity=0.072  Sum_probs=31.1

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccch
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRA   42 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~   42 (80)
                      +|.+|+|+|+++.. ...+.|.|-|=-.+..+..++|-..+.
T Consensus        19 ngryy~~~V~~~~~-~~~y~V~F~DgS~s~dl~PedIvs~dc   59 (123)
T 2xdp_A           19 NTRYYSCRVMAVTS-QTFYEVMFDDGSFSRDTFPEDIVSRDC   59 (123)
T ss_dssp             CCCCCCCEEEEEEE-EEEEEEEETTSCEEEEECGGGBCSSCH
T ss_pred             CCcEEeEEEEEEee-EEEEEEEcCCCCccCCCCHhHcccccc
Confidence            57899999999985 356778877655567787888766664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	80
d2diqa1	97	b.34.9.1 (A:8-104) Tudor and KH domain-containing	1e-17
d2hqxa1	90	b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (	7e-12
d2d9ta1	60	b.34.9.1 (A:8-67) Tudor domain-containing protein	1e-09
d1mhna_	59	b.34.9.1 (A:) Survival motor neuron protein 1, smn	6e-06

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.8 bits (168), Expect = 1e-17
 Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 1/58 (1%)

Query: 2  GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANI 59
          G W+RA++L     N +  + FVD+G         LR +R+DFLSLPFQAIEC LA I
Sbjct: 40 GSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARI 96

>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: P100 co-activator, SND1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (129), Expect = 7e-12
 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 3/52 (5%)

Query: 2  GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLS--LPFQA 51
          G W+RA++  V+   A   V ++DYG    L ++ L  +   F +  LP QA
Sbjct: 39 GEWYRARVEKVES-PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQA 89

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 60

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.7 bits (111), Expect = 1e-09
 Identities = 11/42 (26%), Positives = 23/42 (54%)

Query: 2  GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRAD 43
            ++RA++ A+     +  VKF DYG Y  +  S ++ ++ +
Sbjct: 17 NKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE 58

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]} Length = 59

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (87), Expect = 6e-06
 Identities = 10/39 (25%), Positives = 15/39 (38%)

Query: 2  GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQI 40
          G  + A I ++D    +C V +  YG       S L   
Sbjct: 18 GCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSP 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	80
d2diqa1	97	Tudor and KH domain-containing protein TDRKH {Huma	99.9
d2hqxa1	90	P100 co-activator, SND1 {Human (Homo sapiens) [Tax	99.82
d2d9ta1	60	Tudor domain-containing protein 3, TDRD3 {Mouse (M	99.72
d1mhna_	59	Survival motor neuron protein 1, smn {Human (Homo	99.7
d2buda1	88	Putative histone acetyltransferase MOF {Fruit fly	96.63
d1wgsa_	133	Probable histone acetyltransferase MYST1 {Mouse (M	95.67
d2qqra1	59	Jumonji domain-containing protein 2A {Human (Homo	93.86
d2qqra2	56	Jumonji domain-containing protein 2A {Human (Homo	91.09
d2diga1	55	Lamin-b receptor {Human (Homo sapiens) [TaxId: 960	85.88

>d2diqa1 b.34.9.1 (A:8-104) Tudor and KH domain-containing protein TDRKH {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor and KH domain-containing protein TDRKH
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=3.6e-25  Score=127.71  Aligned_cols=58  Identities=48%  Similarity=0.834  Sum_probs=54.9

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhcCCCcceeEEEecce
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFLSLPFQAIECGLANI   59 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~~lP~qA~~c~L~~v   59 (80)
                      ||.||||+|+++.. ++.+.|+|||||+++.|+.++||.|+++|..+|+||++|+|+||
T Consensus        39 d~~wyRa~V~~~~~-~~~~~V~~vDyG~~~~v~~~~l~~l~~~~~~lP~~A~~c~L~~v   96 (97)
T d2diqa1          39 NGSWYRARVLGTLE-NGNLDLYFVDFGDNGDCPLKDLRALRSDFLSLPFQAIECSLARI   96 (97)
T ss_dssp             TCSCEEEEECCCCS-SSCEEEEETTTCCEEEECGGGCEECCHHHHSSCCSSCCSCSSCS
T ss_pred             CCeEEEEEEEEECC-CCEEEEEEEeeCCEEEEeHHHhhccCHHHhhCChhhEEEEECcC
Confidence            78999999999875 46799999999999999999999999999999999999999997

>d2hqxa1 b.34.9.1 (A:8-97) P100 co-activator, SND1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: P100 co-activator, SND1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=9.1e-21  Score=108.43  Aligned_cols=51  Identities=33%  Similarity=0.587  Sum_probs=46.3

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhhc--CCCccee
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADFL--SLPFQAI   52 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f~--~lP~qA~   52 (80)
                      ||.||||+|+++.. ++.+.|+|||||+++.|+.++||+||++|.  .+|+||.
T Consensus        38 D~~wyRa~V~~~~~-~~~~~V~~vDyG~~~~v~~~~l~~l~~~f~~~~lP~QA~   90 (90)
T d2hqxa1          38 DGEWYRARVEKVES-PAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQAT   90 (90)
T ss_dssp             TSCEEEEEEEEEEE-TTEEEEEETTTCCEEEECGGGEECCCGGGSTTTSCCCC-
T ss_pred             CCCEEEEEEEEeCC-CCeEEEEEEeCCCCEEEEHHHeeECCHHHcCCCCCCCCC
Confidence            78999999999875 478999999999999999999999999996  4999994

>d2d9ta1 b.34.9.1 (A:8-67) Tudor domain-containing protein 3, TDRD3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Tudor domain-containing protein 3, TDRD3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=1.7e-18  Score=92.34  Aligned_cols=43  Identities=26%  Similarity=0.526  Sum_probs=40.1

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchh
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRAD   43 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~   43 (80)
                      ||.||||+|+++..+++.+.|+|+||||++.|+.++||+||++
T Consensus        16 D~~wYRA~I~~i~~~~~~~~V~fvDYGn~e~v~~~~lr~l~~e   58 (60)
T d2d9ta1          16 DNKFYRAEVEALHSSGMTAVVKFTDYGNYEEVLLSNIKPVQTE   58 (60)
T ss_dssp             TCCEEEEEEEEECSSSSEEEEEETTTTEEEEEEGGGEEECCCC
T ss_pred             CCCEEEEEEEEEcCCCCEEEEEEECCCCEEEEcHHHcCcCCCC
Confidence            7899999999998766789999999999999999999999975

>d1mhna_ b.34.9.1 (A:) Survival motor neuron protein 1, smn {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Survival motor neuron protein 1, smn
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=6.8e-18  Score=89.75  Aligned_cols=42  Identities=24%  Similarity=0.340  Sum_probs=38.4

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccch
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRA   42 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~   42 (80)
                      ||.||||+|+++..+++.+.|+|+||||+++|+.++|+++.+
T Consensus        17 Dg~wYRA~I~~v~~~~~~~~V~fvDYGn~e~V~~~~l~~~~~   58 (59)
T d1mhna_          17 DGCIYPATIASIDFKRETCVVVYTGYGNREEQNLSDLLSPIC   58 (59)
T ss_dssp             TSCEEEEEEEEEETTTTEEEEEETTTTEEEEEEGGGCBCTTC
T ss_pred             CCCEEEEEEEEEcCCCCEEEEEEEeCCCEEEEEHHHCcCCCC
Confidence            799999999999866689999999999999999999998764

>d2buda1 b.34.13.3 (A:367-454) Putative histone acetyltransferase MOF {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Putative histone acetyltransferase MOF
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.63  E-value=0.0019  Score=35.41  Aligned_cols=45  Identities=16%  Similarity=0.110  Sum_probs=37.1

Q ss_pred             CCcEEEEEEEEEec-----CCCEEEEEEeeeCCe--EEEccccccccchhhc
Q psy13437          1 MGGWFRAQILAVDV-----VNASCQVKFVDYGGY--LTLETSALRQIRADFL   45 (80)
Q Consensus         1 D~~wyRa~I~~~~~-----~~~~~~V~~vDyG~~--~~v~~~~lr~l~~~f~   45 (80)
                      ||.||+|+|+++..     +...+.|+|..|-..  |.|+.+.|+.-.+++.
T Consensus        23 Dg~~~~AkIi~~R~~~~~~g~~eYyVHY~g~n~r~DEWV~~~ri~~~~de~~   74 (88)
T d2buda1          23 DGTVHRGQVLQSRTTENAAAPDEYYVHYVGLNRRLDGWVGRHRISDNADDLG   74 (88)
T ss_dssp             TSCEEEEEEEEEECTTTCSSCCEEEEECSSSCTTTCEEEETTTEESCHHHHH
T ss_pred             CCCEeeEEEEEEEecCCCCCceEEEEEecCccchhhhccCHhHhhhhhhhcC
Confidence            79999999999863     224789999999875  8999999998877764

>d1wgsa_ b.34.13.3 (A:) Probable histone acetyltransferase MYST1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Chromo domain-like
family: Chromo barrel domain
domain: Probable histone acetyltransferase MYST1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.67  E-value=0.0041  Score=36.35  Aligned_cols=39  Identities=15%  Similarity=0.295  Sum_probs=31.5

Q ss_pred             CCcEEEEEEEEEec--C--CCEEEEEEeeeCCe--EEEccccccc
Q psy13437          1 MGGWFRAQILAVDV--V--NASCQVKFVDYGGY--LTLETSALRQ   39 (80)
Q Consensus         1 D~~wyRa~I~~~~~--~--~~~~~V~~vDyG~~--~~v~~~~lr~   39 (80)
                      ||.||.|+|+++..  .  ...+.|+|..|...  +.|+.+.|..
T Consensus        25 dg~~~~AkVl~~r~~~~~~~~~yyVHY~g~n~r~DEWV~~~ri~~   69 (133)
T d1wgsa_          25 DSTWHSAEVIQSRVNDQEGREEFYVHYVGFNRRLDEWVDKNRLAL   69 (133)
T ss_dssp             TTEEEEEEEEEEEEETTTTEEEEEEECTTTCSSCCEEECTTTSCC
T ss_pred             CCCEeEEEEEEEEecccCCCeEEEEEccCCccccceecCHHHccc
Confidence            68999999999853  1  23689999999875  8999999873

>d2qqra1 b.34.9.1 (A:897-955) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Jumonji domain-containing protein 2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.86  E-value=0.046  Score=27.44  Aligned_cols=37  Identities=14%  Similarity=0.206  Sum_probs=26.5

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEcccccc
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALR   38 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr   38 (80)
                      +|.+|+++|+++.. ..-++|.|=|=-....+..++|-
T Consensus        15 NgryY~c~V~~~~~-qtfyeV~FdDgS~sdnl~PEdIv   51 (59)
T d2qqra1          15 NGRFYQCEVVRLTT-ETFYEVNFDDGSFSDNLYPEDIV   51 (59)
T ss_dssp             TSSEEEEEEEEEEE-EEEEEEEETTSCEEEEECGGGBC
T ss_pred             CCcEEEEEEEEeee-EEEEEEEecCCCcccCcCchhcc
Confidence            58899999999986 35778888444445666666653

>d2qqra2 b.34.9.1 (A:956-1011) Jumonji domain-containing protein 2A {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Jumonji domain-containing protein 2A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.09  E-value=0.2  Score=24.79  Aligned_cols=42  Identities=21%  Similarity=0.339  Sum_probs=33.0

Q ss_pred             CCcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccccccchhh
Q psy13437          1 MGGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSALRQIRADF   44 (80)
Q Consensus         1 D~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~lr~l~~~f   44 (80)
                      ||.-|.|+-++... ...+.|.|=| |....+.+++|+.|.+++
T Consensus        14 DG~~y~A~f~~~~~-~~~YqVeFED-gSql~vKR~dIytl~EeL   55 (56)
T d2qqra2          14 DGQVYGAKFVASHP-IQMYQVEFED-GSQLVVKRDDVYTLDEEL   55 (56)
T ss_dssp             TSCEEEEEEEEEEE-EEEEEEEETT-SCEEEECGGGEEETTSCC
T ss_pred             CCCEEEEEEEecce-eEEEEEEEcC-CcEEEEehhHeecccccC
Confidence            78889999998764 2567777755 778889999999988753

>d2diga1 b.34.9.1 (A:8-62) Lamin-b receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Tudor/PWWP/MBT
family: Tudor domain
domain: Lamin-b receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.88  E-value=1.1  Score=21.66  Aligned_cols=35  Identities=26%  Similarity=0.441  Sum_probs=26.5

Q ss_pred             CcEEEEEEEEEecCCCEEEEEEeeeCCeEEEccccc
Q psy13437          2 GGWFRAQILAVDVVNASCQVKFVDYGGYLTLETSAL   37 (80)
Q Consensus         2 ~~wyRa~I~~~~~~~~~~~V~~vDyG~~~~v~~~~l   37 (80)
                      ..||..+|++.+.....+.|.|-| |....++-++|
T Consensus        20 sLyyev~vls~d~~~~~YtV~ykD-GTelelke~Di   54 (55)
T d2diga1          20 SLYYEVEILSHDSTSQLYTVKYKD-GTELELKENDI   54 (55)
T ss_dssp             CCEEEEEEEEEETTTTEEEEECTT-SCEEEEETTTE
T ss_pred             ceEEEEEEEeecCcceEEEEEecC-Cceeecccccc
Confidence            469999999988655688888877 66666666554