Psyllid ID: psy13485

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MSGFLHVCPASGGIFENLSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYTLYSAAPKASLLPLPLSLYKLELTRPFPSFSGCGEVQARPLPAAPTPILWGFTDFRFGDDLKS
Secondary Structure (PSIPRED)
cccccHHHHHccccccccccccccccccccccccEEEEEEEEEccccEEEEEEEccccEEEEEEccccEEccccHHHHHHHHcccccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccEcccHHEEEcccHHccccEEEEEEEEEEEcccEEEEEEEccccEEEEEEcccEEEccccHHHHHHHHHHccccccccccccccEEccccccccccccccccccccccccEccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
msgflhvcpasggifenlsdvfhgcdnaaastplhQLVGVVTYYgkhystfffhtKLKVWIYfddatvrevgprWEQVRSAFYFFnseytlysaapkasllplplslykleltrpfpsfsgcgevqarplpaaptpilwgftdfrfgddlks
Flexible Loop (DISEMBL)
MSGFLHVCPASGGIFENLSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYTLYSAAPKASLLPLPLSLYKLELTRPFPSFSGCGEVQARPLPAAPTPILWGFTDFRFGDDLKS
Low Complexity Region (SEG)
MSGFLHVCPASGGIFENLSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYTlysaapkasllplplslyklELTRPFPSFSGCGEVQARPLPAAPTPILWGFTDFRFGDDLKS
Disordered region (IsUnstruct)
***FLHVCPASGGIFENLSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYTLYSAAPKASLLPLPLSLYKLELTRPFPSFSGCGEVQARPLPAAPTPILWGFTDFRFG*****
Disordered Region (DISOPRED)
**GFLHVCPASGGIFENLSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYTLYSAAPKA*****************************************GFTDFRFG*****
Disordered Region (DISEMBL)
MSGFLHVCPASGGIFENLSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYTLYSAAPKASLLPLPLSLYKLELTRPFPSFSGCGEVQARPLPAAPTPILWGFTDFRFGDDLKS
Disordered Region (DISPRO)
*SGFLHVCPASGGIFENLSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYTLYSAAPKASLLPLPLSLYKL*************EVQARPLPAAPTPILWGFTDFRFGD****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGFLHVCPASGGIFENLSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYTLYSAAPKASLLPLPLSLYKLELTRPFPSFSGCGEVQARPLPAAPTPILWGFTDFRFGDDLKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
Q6IE24	1588	Inactive ubiquitin carbox	yes	N/A	0.427	0.040	0.522	6e-14
Q8BL06	1588	Inactive ubiquitin carbox	yes	N/A	0.427	0.040	0.522	6e-14
Q70EL1	1684	Inactive ubiquitin carbox	yes	N/A	0.427	0.038	0.522	6e-14
P15975	1069	Inactive ubiquitin carbox	no	N/A	0.355	0.050	0.490	1e-09
Q70EK8	1073	Inactive ubiquitin carbox	no	N/A	0.414	0.058	0.412	2e-09

>sp|Q6IE24|UBP54_RAT Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Rattus norvegicus GN=Usp54 PE=2 SV=2

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 2/67 (2%)

Query: 13  GIFENLSDVF-HGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREV 71
           G    L D+F    D+ A  + L+ LVG++ YYGKHYSTFFF TK++ W+YFDDA V+E+
Sbjct: 268 GTCLKLGDLFFRVTDDRAKQSELY-LVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEI 326

Query: 72  GPRWEQV 78
           GP+W+ V
Sbjct: 327 GPKWKDV 333

Has no peptidase activity.
Rattus norvegicus (taxid: 10116)

>sp|Q8BL06|UBP54_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Mus musculus GN=Usp54 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 2/67 (2%)

Query: 13  GIFENLSDVF-HGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREV 71
           G    L D+F    D+ A  + L+ LVG++ YYGKHYSTFFF TK++ W+YFDDA V+E+
Sbjct: 268 GTCLKLGDLFFRVTDDRAKQSELY-LVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEI 326

Query: 72  GPRWEQV 78
           GP+W+ V
Sbjct: 327 GPKWKDV 333

Has no peptidase activity.

Mus musculus (taxid: 10090)

>sp|Q70EL1|UBP54_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 54 OS=Homo sapiens GN=USP54 PE=1 SV=4

 Score = 76.3 bits (186), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 48/67 (71%), Gaps = 2/67 (2%)

Query: 13  GIFENLSDVF-HGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREV 71
           G    L D+F    D+ A  + L+ LVG++ YYGKHYSTFFF TK++ W+YFDDA V+E+
Sbjct: 268 GTCLKLGDLFFRVTDDRAKQSELY-LVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEI 326

Query: 72  GPRWEQV 78
           GP+W+ V
Sbjct: 327 GPKWKDV 333

Has no peptidase activity.

Homo sapiens (taxid: 9606)

>sp|P15975|UBP53_MOUSE Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Mus musculus GN=Usp53 PE=2 SV=2

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 27/55 (49%), Positives = 36/55 (65%), Gaps = 1/55 (1%)

Query: 26  DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRS 80
           D  A  + LH LVG++ Y  +HY  F FHTK   W++FDDA V+E+G RW+ V S
Sbjct: 281 DENATDSELH-LVGMICYTSRHYCAFAFHTKSSKWVFFDDAHVKEMGTRWKDVVS 334

Has no peptidase activity.

Mus musculus (taxid: 10090)

>sp|Q70EK8|UBP53_HUMAN Inactive ubiquitin carboxyl-terminal hydrolase 53 OS=Homo sapiens GN=USP53 PE=2 SV=2

 Score = 61.2 bits (147), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 26/63 (41%), Positives = 37/63 (58%)

Query: 18  LSDVFHGCDNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWEQ 77
           L  +F+   +  A      LVG++ Y  +HY  F FHTK   W++FDDA V+E+G RW+ 
Sbjct: 272 LPGLFYRVTDENAKNSELNLVGMICYTSQHYCAFAFHTKSSKWVFFDDANVKEIGTRWKD 331

Query: 78  VRS 80
           V S
Sbjct: 332 VVS 334

Has no peptidase activity.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
345481254	1925	PREDICTED: hypothetical protein LOC10011	0.453	0.035	0.728	7e-23
307191022	1898	Inactive ubiquitin carboxyl-terminal hyd	0.453	0.036	0.714	1e-22
332020947	1900	Inactive ubiquitin carboxyl-terminal hyd	0.453	0.036	0.714	1e-22
307212852	1684	Inactive ubiquitin carboxyl-terminal hyd	0.453	0.040	0.714	3e-22
328782021	1909	PREDICTED: hypothetical protein LOC41103	0.453	0.036	0.714	3e-22
383856832	1898	PREDICTED: uncharacterized protein LOC10	0.453	0.036	0.714	5e-22
340713337	1965	PREDICTED: hypothetical protein LOC10064	0.453	0.035	0.714	5e-22
350415842	1967	PREDICTED: hypothetical protein LOC10074	0.453	0.035	0.714	5e-22
328720253	1977	PREDICTED: hypothetical protein LOC10016	0.401	0.030	0.793	5e-22
322792157	1736	hypothetical protein SINV_11478 [Solenop	0.453	0.039	0.7	8e-22

>gi|345481254|ref|XP_001603677.2| PREDICTED: hypothetical protein LOC100119988 [Nasonia vitripennis]

 Score =  112 bits (279), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 51/70 (72%), Positives = 57/70 (81%), Gaps = 1/70 (1%)

Query: 10  ASGGIFENLSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 68
           A+ G    LSDVFH   D+   +T +H LVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV
Sbjct: 239 ATVGTSLRLSDVFHSVVDSRWGATTVHNLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 298

Query: 69  REVGPRWEQV 78
           +E+GPRWEQV
Sbjct: 299 KEIGPRWEQV 308

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307191022|gb|EFN74776.1| Inactive ubiquitin carboxyl-terminal hydrolase 54 [Camponotus floridanus]

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/70 (71%), Positives = 57/70 (81%), Gaps = 1/70 (1%)

Query: 10  ASGGIFENLSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 68
           A+ G    LSDVFH   D+   ++ +H LVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV
Sbjct: 254 ATVGTSLRLSDVFHSVVDSRWGASTVHNLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 313

Query: 69  REVGPRWEQV 78
           +E+GPRWEQV
Sbjct: 314 KEIGPRWEQV 323

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332020947|gb|EGI61340.1| Inactive ubiquitin carboxyl-terminal hydrolase 54 [Acromyrmex echinatior]

 Score =  110 bits (276), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/70 (71%), Positives = 57/70 (81%), Gaps = 1/70 (1%)

Query: 10  ASGGIFENLSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 68
           A+ G    LSDVFH   D+   ++ +H LVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV
Sbjct: 253 ATVGTSLRLSDVFHSVVDSRWGASTVHNLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 312

Query: 69  REVGPRWEQV 78
           +E+GPRWEQV
Sbjct: 313 KEIGPRWEQV 322

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212852|gb|EFN88483.1| Inactive ubiquitin carboxyl-terminal hydrolase 54 [Harpegnathos saltator]

 Score =  110 bits (274), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/70 (71%), Positives = 57/70 (81%), Gaps = 1/70 (1%)

Query: 10  ASGGIFENLSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 68
           A+ G    LSDVFH   D+   ++ +H LVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV
Sbjct: 149 ATVGTCLRLSDVFHSVVDSRWGASTVHNLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 208

Query: 69  REVGPRWEQV 78
           +E+GPRWEQV
Sbjct: 209 KEIGPRWEQV 218

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328782021|ref|XP_394511.4| PREDICTED: hypothetical protein LOC411038 [Apis mellifera]

 Score =  109 bits (273), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 50/70 (71%), Positives = 57/70 (81%), Gaps = 1/70 (1%)

Query: 10  ASGGIFENLSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 68
           A+ G    LSDVFH   D+   ++ +H LVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV
Sbjct: 248 ATVGTSLRLSDVFHSVVDSRWGASTVHNLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 307

Query: 69  REVGPRWEQV 78
           +E+GPRWEQV
Sbjct: 308 KEIGPRWEQV 317

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856832|ref|XP_003703911.1| PREDICTED: uncharacterized protein LOC100875973 [Megachile rotundata]

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/70 (71%), Positives = 57/70 (81%), Gaps = 1/70 (1%)

Query: 10  ASGGIFENLSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 68
           A+ G    LSDVFH   D+   ++ +H LVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV
Sbjct: 249 ATVGTSLRLSDVFHSVVDSRWGASTVHNLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 308

Query: 69  REVGPRWEQV 78
           +E+GPRWEQV
Sbjct: 309 KEIGPRWEQV 318

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340713337|ref|XP_003395201.1| PREDICTED: hypothetical protein LOC100646738 [Bombus terrestris]

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/70 (71%), Positives = 57/70 (81%), Gaps = 1/70 (1%)

Query: 10  ASGGIFENLSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 68
           A+ G    LSDVFH   D+   ++ +H LVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV
Sbjct: 294 ATVGTSLRLSDVFHSVVDSRWGASTVHNLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 353

Query: 69  REVGPRWEQV 78
           +E+GPRWEQV
Sbjct: 354 KEIGPRWEQV 363

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415842|ref|XP_003490765.1| PREDICTED: hypothetical protein LOC100744780 [Bombus impatiens]

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/70 (71%), Positives = 57/70 (81%), Gaps = 1/70 (1%)

Query: 10  ASGGIFENLSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 68
           A+ G    LSDVFH   D+   ++ +H LVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV
Sbjct: 294 ATVGTSLRLSDVFHSVVDSRWGASTVHNLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 353

Query: 69  REVGPRWEQV 78
           +E+GPRWEQV
Sbjct: 354 KEIGPRWEQV 363

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328720253|ref|XP_001944033.2| PREDICTED: hypothetical protein LOC100161660 [Acyrthosiphon pisum]

 Score =  108 bits (271), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 50/63 (79%), Positives = 53/63 (84%), Gaps = 2/63 (3%)

Query: 18  LSDVFHGC-DNAAASTPL-HQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRW 75
           L DVFHG  D    S PL HQLVGVVTYYGKHYSTFF+HTKLK+WIYFDDA VRE+GPRW
Sbjct: 253 LCDVFHGSFDLPNGSMPLQHQLVGVVTYYGKHYSTFFYHTKLKIWIYFDDANVREIGPRW 312

Query: 76  EQV 78
           EQV
Sbjct: 313 EQV 315

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322792157|gb|EFZ16209.1| hypothetical protein SINV_11478 [Solenopsis invicta]

 Score =  108 bits (270), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 49/70 (70%), Positives = 56/70 (80%), Gaps = 1/70 (1%)

Query: 10  ASGGIFENLSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 68
           A+ G    LSDVFH   D+   +  +H LVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV
Sbjct: 86  ATVGTSLRLSDVFHSVIDSRWGANTVHNLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATV 145

Query: 69  REVGPRWEQV 78
           +E+GPRW+QV
Sbjct: 146 KEIGPRWDQV 155

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
FB|FBgn0000542	1765	ec "echinus" [Drosophila melan	0.486	0.041	0.573	4.3e-18
UNIPROTKB|Q70EL1	1684	USP54 "Inactive ubiquitin carb	0.394	0.035	0.548	1.4e-14
ZFIN|ZDB-GENE-090828-2	1497	usp54a "ubiquitin specific pep	0.440	0.044	0.550	3.6e-14
UNIPROTKB|G8JLB5	744	USP54 "Inactive ubiquitin carb	0.394	0.080	0.548	7.9e-14
UNIPROTKB|E1BU81	891	E1BU81 "Uncharacterized protei	0.394	0.067	0.548	1.3e-13
MGI|MGI:1926037	1588	Usp54 "ubiquitin specific pept	0.394	0.037	0.548	2.2e-13
RGD|1303206	1588	Usp54 "ubiquitin specific pept	0.394	0.037	0.548	2.2e-13
UNIPROTKB|Q6IE24	1588	Usp54 "Inactive ubiquitin carb	0.394	0.037	0.548	2.2e-13
UNIPROTKB|F1PG31	1637	USP54 "Uncharacterized protein	0.394	0.036	0.548	2.2e-13
UNIPROTKB|F1SU56	1647	USP54 "Uncharacterized protein	0.394	0.036	0.548	2.3e-13

FB|FBgn0000542 ec "echinus" [Drosophila melanogaster (taxid:7227)]

 Score = 231 (86.4 bits), Expect = 4.3e-18, Sum P(2) = 4.3e-18
 Identities = 43/75 (57%), Positives = 51/75 (68%)

Query:     5 LHVCPASGGIFENLSDVFHGCDNAA-ASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYF 63
             +H    + G    L DVFH       A    H+LVG+V+YYGKHY+TFFFHTKLKVW+YF
Sbjct:   320 VHAVLKAVGTSLRLGDVFHQVSEPRWAQQTQHELVGIVSYYGKHYTTFFFHTKLKVWVYF 379

Query:    64 DDATVREVGPRWEQV 78
             DDA V+EVGP WE V
Sbjct:   380 DDANVKEVGPSWEGV 394

GO:0046667 "compound eye retinal cell programmed cell death" evidence=IMP;TAS

GO:0046666 "retinal cell programmed cell death" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA;NAS

GO:0008157 "protein phosphatase 1 binding" evidence=IPI

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0004843 "ubiquitin-specific protease activity" evidence=IDA

GO:0016579 "protein deubiquitination" evidence=IDA

GO:0016318 "ommatidial rotation" evidence=IMP

UNIPROTKB|Q70EL1 USP54 "Inactive ubiquitin carboxyl-terminal hydrolase 54" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
 Identities = 34/62 (54%), Positives = 47/62 (75%)

Query:    18 LSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWE 76
             L D+F    D+ A  + L+ LVG++ YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+
Sbjct:   273 LGDLFFRVTDDRAKQSELY-LVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWK 331

Query:    77 QV 78
              V
Sbjct:   332 DV 333

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

ZFIN|ZDB-GENE-090828-2 usp54a "ubiquitin specific peptidase 54a" [Danio rerio (taxid:7955)]

 Score = 197 (74.4 bits), Expect = 3.6e-14, P = 3.6e-14
 Identities = 38/69 (55%), Positives = 49/69 (71%)

Query:    13 GIFENLSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREV 71
             G    L D+F+   ++ A    L+ LVGVV YYGKHYSTFFF TK++ WIYFDDA V+E+
Sbjct:   268 GTVLRLGDLFYRVTEDKAKQAELY-LVGVVCYYGKHYSTFFFQTKIRKWIYFDDAHVKEI 326

Query:    72 GPRWEQVRS 80
             GP+W+ V S
Sbjct:   327 GPKWKDVVS 335

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|G8JLB5 USP54 "Inactive ubiquitin carboxyl-terminal hydrolase 54" [Homo sapiens (taxid:9606)]

 Score = 190 (71.9 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 34/62 (54%), Positives = 47/62 (75%)

Query:    18 LSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWE 76
             L D+F    D+ A  + L+ LVG++ YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+
Sbjct:   273 LGDLFFRVTDDRAKQSELY-LVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWK 331

Query:    77 QV 78
              V
Sbjct:   332 DV 333

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|E1BU81 E1BU81 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 189 (71.6 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 34/62 (54%), Positives = 47/62 (75%)

Query:    18 LSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWE 76
             L D+F    D+ A  + L+ LVG++ YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+
Sbjct:   273 LGDLFFRVTDDRAKHSELY-LVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWK 331

Query:    77 QV 78
              V
Sbjct:   332 DV 333

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

MGI|MGI:1926037 Usp54 "ubiquitin specific peptidase 54" [Mus musculus (taxid:10090)]

 Score = 190 (71.9 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 34/62 (54%), Positives = 47/62 (75%)

Query:    18 LSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWE 76
             L D+F    D+ A  + L+ LVG++ YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+
Sbjct:   273 LGDLFFRVTDDRAKQSELY-LVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWK 331

Query:    77 QV 78
              V
Sbjct:   332 DV 333

GO:0003674 "molecular_function" evidence=ND

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1303206 Usp54 "ubiquitin specific peptidase 54" [Rattus norvegicus (taxid:10116)]

 Score = 190 (71.9 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 34/62 (54%), Positives = 47/62 (75%)

Query:    18 LSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWE 76
             L D+F    D+ A  + L+ LVG++ YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+
Sbjct:   273 LGDLFFRVTDDRAKQSELY-LVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWK 331

Query:    77 QV 78
              V
Sbjct:   332 DV 333

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|Q6IE24 Usp54 "Inactive ubiquitin carboxyl-terminal hydrolase 54" [Rattus norvegicus (taxid:10116)]

 Score = 190 (71.9 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 34/62 (54%), Positives = 47/62 (75%)

Query:    18 LSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWE 76
             L D+F    D+ A  + L+ LVG++ YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+
Sbjct:   273 LGDLFFRVTDDRAKQSELY-LVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWK 331

Query:    77 QV 78
              V
Sbjct:   332 DV 333

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|F1PG31 USP54 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 190 (71.9 bits), Expect = 2.2e-13, P = 2.2e-13
 Identities = 34/62 (54%), Positives = 47/62 (75%)

Query:    18 LSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWE 76
             L D+F    D+ A  + L+ LVG++ YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+
Sbjct:   273 LGDLFFRVTDDRAKQSELY-LVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWK 331

Query:    77 QV 78
              V
Sbjct:   332 DV 333

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|F1SU56 USP54 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 190 (71.9 bits), Expect = 2.3e-13, P = 2.3e-13
 Identities = 34/62 (54%), Positives = 47/62 (75%)

Query:    18 LSDVFHGC-DNAAASTPLHQLVGVVTYYGKHYSTFFFHTKLKVWIYFDDATVREVGPRWE 76
             L D+F    D+ A  + L+ LVG++ YYGKHYSTFFF TK++ W+YFDDA V+E+GP+W+
Sbjct:   232 LGDLFFRVTDDRAKQSELY-LVGMICYYGKHYSTFFFQTKIRKWMYFDDAHVKEIGPKWK 290

Query:    77 QV 78
              V
Sbjct:   291 DV 292

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q70EL1	UBP54_HUMAN	No assigned EC number	0.5223	0.4276	0.0385	yes	N/A
Q8BL06	UBP54_MOUSE	No assigned EC number	0.5223	0.4276	0.0409	yes	N/A
Q6IE24	UBP54_RAT	No assigned EC number	0.5223	0.4276	0.0409	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	152
cd02257	255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	1e-04
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	3e-04

>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 18/61 (29%), Positives = 24/61 (39%), Gaps = 7/61 (11%)

Query: 37  LVGVVTYYGK-----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYTL 91
           LV VV + G      HY  +        W  F+D  V EV    E+V       +S Y L
Sbjct: 195 LVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEV--SEEEVLEFGSLSSSAYIL 252

Query: 92  Y 92
           +
Sbjct: 253 F 253

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 255

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 6/54 (11%)

Query: 36  QLVGVVTYYGK-----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYF 84
           +LV VV + G      HY  +    +   W+ FDD  V  V    E +RS+ Y 
Sbjct: 258 ELVAVVVHSGSSLSGGHYIAYIKKREKNKWVKFDDEKVSVVTE-EEVLRSSAYI 310

Length = 313

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	152
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	99.36
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	99.28
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	99.26
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	99.25
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	99.23
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	99.16
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	99.15
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.15
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	99.1
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	98.4
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	96.04

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=99.36  E-value=1.4e-12  Score=104.42  Aligned_cols=74  Identities=20%  Similarity=0.271  Sum_probs=59.3

Q ss_pred             ceEeccccccccCCCCCCCCceeEEEEEEeecc----ceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhhccccee
Q psy13485         14 IFENLSDVFHGCDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEY   89 (152)
Q Consensus        14 teLdLs~LF~~vd~~a~~~t~Y~LvgmVCYyG~----HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~r~qP~v   89 (152)
                      ++|||+.....-.    ....|.|.|||||+|.    ||+||+++.+.++|+.|||+.|+.|.  +++|.    .-+|+|
T Consensus       267 ~~ldl~~~~~~~~----~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~--~~~v~----~~~aY~  336 (348)
T 3nhe_A          267 RDLDLREFASENT----NHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMS--SSQVR----TSDAYL  336 (348)
T ss_dssp             SCEECGGGBCTTC----CCCEEEEEEEEEEEECSSCEEEEEEEECTTTCCEEEEETTEEEEEC--GGGTC----CTTEEE
T ss_pred             CcCCHhhhcCCCC----CCCcEEEEEEEEccCCCCCcccEEEEccCCCCcEEEEeCCCceECC--HHHcC----CCCceE
Confidence            3577776432211    1357999999999997    99999998889999999999999998  77774    468999


Q ss_pred             eeeecCCC
Q psy13485         90 TLYSAAPK   97 (152)
Q Consensus        90 LFYEaapk   97 (152)
                      |||++.+.
T Consensus       337 LfY~r~~~  344 (348)
T 3nhe_A          337 LFYELASP  344 (348)
T ss_dssp             EEEEECC-
T ss_pred             EEEEecCC
Confidence            99999653

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=99.28  E-value=6.1e-12  Score=104.20  Aligned_cols=82  Identities=21%  Similarity=0.201  Sum_probs=65.3

Q ss_pred             ccceEeccccccccCCCCCCCCceeEEEEEEeec----cceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhh----
Q psy13485         12 GGIFENLSDVFHGCDNAAASTPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFY----   83 (152)
Q Consensus        12 L~teLdLs~LF~~vd~~a~~~t~Y~LvgmVCYyG----~HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~----   83 (152)
                      ...+|||+......++.  ....|.|+|||||+|    -||+||+++...++|+.|||+.|..|.  |++|++.|.    
T Consensus       220 fp~~Ldl~~~~~~~~~~--~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~--~~~v~~~~~gg~~  295 (353)
T 1nb8_A          220 FPEQLPLDEFLQKTDPK--DPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCT--KEEAIEHNYGGHD  295 (353)
T ss_dssp             CCSEEECGGGBSSCCTT--SCCEEEEEEEEEEESSTTCCCEEEEECTTSSSCCEEEETTEEEECC--HHHHTGGGSCCC-
T ss_pred             CCCeeehhhhhcccCCC--CCceEEEEEEEEEeCCCCCcEEEEEEecCCCCCEEEEECcceEECC--HHHHHHHhcCCCc
Confidence            34578887643332222  235799999999999    499999998889999999999999998  999998774    


Q ss_pred             -------cccceeeeeecCCC
Q psy13485         84 -------FFNSEYTLYSAAPK   97 (152)
Q Consensus        84 -------r~qP~vLFYEaapk   97 (152)
                             .-+|+||||++...
T Consensus       296 ~~~~~~~~~~aYiLfY~r~~~  316 (353)
T 1nb8_A          296 DDLSVRHCTNAYMLVYIRESK  316 (353)
T ss_dssp             ------CCEEEEEEEEEETTT
T ss_pred             cccccCcCCeEEEEEEEECch
Confidence                   15799999999654

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=99.26  E-value=1.1e-11  Score=101.94  Aligned_cols=74  Identities=23%  Similarity=0.338  Sum_probs=58.6

Q ss_pred             eEeccccccccCCCCCCCCceeEEEEEEeecc----ceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhhcccceee
Q psy13485         15 FENLSDVFHGCDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYT   90 (152)
Q Consensus        15 eLdLs~LF~~vd~~a~~~t~Y~LvgmVCYyG~----HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~r~qP~vL   90 (152)
                      .|||+..-..   .......|.|+|||+|+|.    ||+||+++..+++|+.|||+.|+.|.  +++|+    .-+|+||
T Consensus       283 ~Ldl~~~~~~---~~~~~~~Y~L~avv~H~G~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~--~~~v~----~~~aYiL  353 (367)
T 2y6e_A          283 GLNMSEFVCN---LSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLAS--EDQIV----TKAAYVL  353 (367)
T ss_dssp             CEECGGGBSC---SSSCCCEEEEEEEEEEECSSSSCEEEEEEECTTTCCEEEEETTEEEECC--GGGTS----STTEEEE
T ss_pred             cCChhhhccC---CCCCCceEEEEEEeecCCCCCCCeeeEEEEcCCCCeEEEECCCCceECC--HHHcC----CCCcEEE
Confidence            4666653221   1122457999999999984    99999998888999999999999998  78876    3689999


Q ss_pred             eeecCCC
Q psy13485         91 LYSAAPK   97 (152)
Q Consensus        91 FYEaapk   97 (152)
                      ||++...
T Consensus       354 fY~r~~~  360 (367)
T 2y6e_A          354 FYQRRDD  360 (367)
T ss_dssp             EEEECCC
T ss_pred             EEEEcCC
Confidence            9999653

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=99.25  E-value=1.1e-11  Score=102.47  Aligned_cols=62  Identities=27%  Similarity=0.341  Sum_probs=54.5

Q ss_pred             CCceeEEEEEEeecc-----ceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhh---cccceeeeeecCC
Q psy13485         32 TPLHQLVGVVTYYGK-----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFY---FFNSEYTLYSAAP   96 (152)
Q Consensus        32 ~t~Y~LvgmVCYyG~-----HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~---r~qP~vLFYEaap   96 (152)
                      ...|.|+|||||.|.     ||+||+++ +.++|+.|||+.|..|.  +++|++.+.   .-.|+||||++..
T Consensus       325 ~~~Y~L~avv~H~G~s~~~GHY~a~v~~-~~~~W~~fnD~~V~~v~--~~~v~~~~~g~~~~~aYiLfY~r~~  394 (404)
T 2ayn_A          325 CGYYDLQAVLTHQGRSSSSGHYVSWVKR-KQDEWIKFDDDKVSIVT--PEDILRLSGGGDWHIAYVLLYGPRR  394 (404)
T ss_dssp             CSEEEEEEEEEEESSSTTSSEEEEEEEE-ETTEEEEEBTTBCCCBC--HHHHGGGGSSSSSCEEEEEEEECC-
T ss_pred             CceEEEEEEEEecCCCCCCCCeEEEEEC-CCCeEEEeecccceecC--HHHHHhhhCCCCCceEEEEEEEecC
Confidence            367999999999997     99999996 48899999999999998  999988875   4569999999854

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=99.23  E-value=1.9e-11  Score=102.44  Aligned_cols=62  Identities=26%  Similarity=0.359  Sum_probs=55.2

Q ss_pred             CCceeEEEEEEeecc-----ceEEEEEe-eccceEEEEeCccceeeCCChHHHHHHhh---cccceeeeeecC
Q psy13485         32 TPLHQLVGVVTYYGK-----HYSTFFFH-TKLKVWIYFDDATVREVGPRWEQVRSAFY---FFNSEYTLYSAA   95 (152)
Q Consensus        32 ~t~Y~LvgmVCYyG~-----HY~aF~y~-~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~---r~qP~vLFYEaa   95 (152)
                      ...|.|+|||++.|+     ||+||+++ ...++|+.|||+.|..|.  +++|.+.+.   .-.|+||||++.
T Consensus       343 ~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~--~~~v~~~~~g~~~~~aYiLfY~r~  413 (415)
T 1vjv_A          343 SCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVE--KEKIESLAGGGESDSALILMYKGF  413 (415)
T ss_dssp             SSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEEC--HHHHHGGGCCTTSCEEEEEEEEET
T ss_pred             CceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcC--HHHHhhhcCCCCcceEEEEEEEec
Confidence            467999999999997     99999997 678999999999999998  899988775   345999999984

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=99.16  E-value=7e-11  Score=99.67  Aligned_cols=58  Identities=22%  Similarity=0.416  Sum_probs=51.6

Q ss_pred             CCceeEEEEEEeec----cceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhhcccceeeeeecC
Q psy13485         32 TPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYTLYSAA   95 (152)
Q Consensus        32 ~t~Y~LvgmVCYyG----~HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~r~qP~vLFYEaa   95 (152)
                      ...|.|+|||+|+|    -||+||+++...++|+.|||+.|+.|.  +++|.    .-+|+||||++.
T Consensus       334 ~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~--~~~v~----~~~aYiLfY~r~  395 (396)
T 2gfo_A          334 LKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDIS--VSSVK----SSAAYILFYTSL  395 (396)
T ss_dssp             CCCBEEEEEEEEESCTTTCEEEEEEEETTTTEEEEEETTEEEECC--HHHHS----CTTEEEEEEECC
T ss_pred             CceEEEEEEEEecCCCCCCceEEEEcCCCCCCEEEEeCCCeEECC--HHHcC----CCCceEEEEEEc
Confidence            35799999999998    499999998888999999999999998  77775    468999999973

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=99.15  E-value=7.2e-11  Score=94.78  Aligned_cols=56  Identities=25%  Similarity=0.380  Sum_probs=49.1

Q ss_pred             CCceeEEEEEEeecc----ceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhhcccceeeeeecC
Q psy13485         32 TPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYTLYSAA   95 (152)
Q Consensus        32 ~t~Y~LvgmVCYyG~----HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~r~qP~vLFYEaa   95 (152)
                      ...|.|+|||+|+|.    ||+||++.  .+.|+.|||+.|+.|.  +++|++    -+|+||||++.
T Consensus       291 ~~~Y~L~avv~H~G~~~~GHY~~~~~~--~~~W~~~nD~~V~~v~--~~~v~~----~~aYiLfY~r~  350 (355)
T 3i3t_A          291 SPVYQLYALCNHSGSVHYGHYTALCRC--QTGWHVYNDSRVSPVS--ENQVAS----SEGYVLFYQLM  350 (355)
T ss_dssp             CCEEEEEEEEEEEEETTEEEEEEEEEE--TTEEEEEETTEEEEEC--HHHHHT----SCCSEEEEEEC
T ss_pred             CcceEEEEEEEecCCCCCCeEEEEEEc--CCeEEEEcCCCcEECC--HHHcCC----CCcEEEEEEec
Confidence            357999999999994    99999994  5679999999999998  888864    58999999984

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.15  E-value=4.8e-11  Score=103.96  Aligned_cols=82  Identities=21%  Similarity=0.201  Sum_probs=64.7

Q ss_pred             ccceEeccccccccCCCCCCCCceeEEEEEEeec----cceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhh----
Q psy13485         12 GGIFENLSDVFHGCDNAAASTPLHQLVGVVTYYG----KHYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFY----   83 (152)
Q Consensus        12 L~teLdLs~LF~~vd~~a~~~t~Y~LvgmVCYyG----~HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~----   83 (152)
                      ...+|||+..-..-++.  ....|.|+|||||+|    -||+||+++...++|+.|||+.|..|.  +++|++.|.    
T Consensus       389 fp~~Ldl~~~~~~~~~~--~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~--~~~v~~~~~Gg~~  464 (522)
T 2f1z_A          389 FPEQLPLDEFLQKTDPK--DPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCT--KEEAIEHNYGGHD  464 (522)
T ss_dssp             CCSEEECGGGBSSCCTT--SCCEEEEEEEEEEECSSSCSEEEEEECTTSSSCCEEEETTEEEECC--HHHHSTTSSCCC-
T ss_pred             CCCeecchhhhccccCC--CCcEEEEEEEEEecccCCCceEEEEEecCCCCCEEEEECceeEECC--HHHHHHhhcCCCc
Confidence            34578887643322222  235799999999999    499999998788999999999999998  999998664    


Q ss_pred             -------cccceeeeeecCCC
Q psy13485         84 -------FFNSEYTLYSAAPK   97 (152)
Q Consensus        84 -------r~qP~vLFYEaapk   97 (152)
                             .-+|+||||++...
T Consensus       465 ~~~~~~~~~~aYiLfY~r~~~  485 (522)
T 2f1z_A          465 DDLSVRHCTNAYMLVYIRESK  485 (522)
T ss_dssp             -------CEEEEEEEEEETTS
T ss_pred             cccccCcCCceEEEEEEECCc
Confidence                   25799999999654

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=99.10  E-value=2e-10  Score=98.02  Aligned_cols=76  Identities=20%  Similarity=0.329  Sum_probs=59.2

Q ss_pred             ccceEeccccccccCC------CCCCCCceeEEEEEEeecc----ceEEEEEeeccceEEEEeCccceeeCCChHHHHHH
Q psy13485         12 GGIFENLSDVFHGCDN------AAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSA   81 (152)
Q Consensus        12 L~teLdLs~LF~~vd~------~a~~~t~Y~LvgmVCYyG~----HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~   81 (152)
                      ...+|||+........      .......|.|+|||+|.|.    ||+||+.. ..++|+.|||+.|++|.  |++|++ 
T Consensus       387 fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~-~~~~W~~fnD~~V~~v~--~~~v~~-  462 (476)
T 3mhs_A          387 FPTYLNMKNYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKI-SGGQWFKFNDSMVSSIS--QEEVLK-  462 (476)
T ss_dssp             CCSEEECGGGBSCCBCCC--CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEEC-TTSCEEEEETTEEEEEC--HHHHTT-
T ss_pred             CCCeeechhhcCcccccccccccCCCCCcEEEEEEEEeCCCCCCCceEEEEEC-CCCcEEEEeCCceEECC--HHHhcc-
Confidence            4567888864432211      1122356999999999997    99999963 47899999999999997  899876 


Q ss_pred             hhcccceeeeeec
Q psy13485         82 FYFFNSEYTLYSA   94 (152)
Q Consensus        82 C~r~qP~vLFYEa   94 (152)
                         -+|+||||++
T Consensus       463 ---~~aYiLfY~r  472 (476)
T 3mhs_A          463 ---EQAYLLFYTI  472 (476)
T ss_dssp             ---SCEEEEEEEE
T ss_pred             ---CCcEEEEEEE
Confidence               5899999997

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=98.40  E-value=3.8e-07  Score=85.63  Aligned_cols=54  Identities=17%  Similarity=0.209  Sum_probs=45.6

Q ss_pred             CceeEEEEEEeecc-----ceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhhcccceeeeeecCC
Q psy13485         33 PLHQLVGVVTYYGK-----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYTLYSAAP   96 (152)
Q Consensus        33 t~Y~LvgmVCYyG~-----HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~r~qP~vLFYEaap   96 (152)
                      ..|+|+||||+.|.     ||+||++.  .++|+.|||..|.++.    ++    .+-.++||||++..
T Consensus       795 ~~Y~L~avi~H~G~~~~~GHY~~~~~~--~~~W~~~nD~~V~~~~----~~----~~~~aYilfY~R~~  853 (854)
T 3ihp_A          795 GKYQLFAFISHMGTSTMCGHYVCHIKK--EGRWVIYNDQKVCASE----KP----PKDLGYIYFYQRVA  853 (854)
T ss_dssp             SEEEEEEEEEEESSCSSCCEEEEEEEE--TTEEEEEETTEEEECS----SC----CTTSCSEEEEEECC
T ss_pred             ceEEEEEEEEeecCCCCCcCeEEEEEe--CCEEEEEECCeeEEcc----cc----CCCcceEEEEEecC
Confidence            46999999999994     99999994  7999999999999985    11    25678999999853

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}

Probab=96.04  E-value=0.0061  Score=53.50  Aligned_cols=33  Identities=24%  Similarity=0.478  Sum_probs=28.9

Q ss_pred             CCceeEEEEEEeeccceEEEEEe-eccceEEEEe
Q psy13485         32 TPLHQLVGVVTYYGKHYSTFFFH-TKLKVWIYFD   64 (152)
Q Consensus        32 ~t~Y~LvgmVCYyG~HY~aF~y~-~k~~rWv~fD   64 (152)
                      +..|.|+||||=.+-||+||+.. .++++|+.||
T Consensus       274 sg~yeL~aVltadsgHYvafVK~~~~d~~W~~FD  307 (374)
T 2vhf_A          274 CQNMELFAVLCIETSHYVAFVKYGKDDSAWLFFD  307 (374)
T ss_dssp             -CCEEEEEEEEEETTEEEEEEECSSSTTCEEEEE
T ss_pred             ceeEEEEEEEEccCCceEEEEEecCCCCCeEEEe
Confidence            45799999999888899999996 3589999999

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	152
d2gfoa1	348	d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal h	5e-07
d2hd5a1	336	d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hy	4e-06
d1nbfa_	347	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	7e-06
d2ayna1	383	d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hy	8e-06
d1vjva_	397	d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase	2e-05

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]} Length = 348

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.5 bits (106), Expect = 5e-07
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 25  CDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRS 80
                 +   + L  V  +YG     HY+ +  +   + W  FDD  V ++     +  +
Sbjct: 280 VIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSA 339

Query: 81  AFYFF 85
           A+  F
Sbjct: 340 AYILF 344

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 336

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 4e-06
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 4/59 (6%)

Query: 31  STPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFF 85
           +  ++ L  V  + G     HY+ +        W  F+D++V  +     +   A+  F
Sbjct: 274 NHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLF 332

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]} Length = 347

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 7e-06
 Identities = 16/92 (17%), Positives = 24/92 (26%), Gaps = 6/92 (6%)

Query: 14  IFENLSDVFHGCDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVR 69
             E L                + L  V+ + G     HY  +        W  FDD  V 
Sbjct: 220 FPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVS 279

Query: 70  EVGPRWEQVRSAFYFFNSEYTLYSAAPKASLL 101
                 E+     Y  + +         A +L
Sbjct: 280 RC--TKEEAIEHNYGGHDDDLSVRHCTNAYML 309

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]} Length = 383

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.0 bits (97), Expect = 8e-06
 Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 8/68 (11%)

Query: 26  DNAAASTPLHQLVGVVTYYGK-----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRS 80
           D  + +   + L  V+T+ G+     HY   +   K   WI FDD  V  V    E +  
Sbjct: 309 DIGSNNCGYYDLQAVLTHQGRSSSSGHY-VSWVKRKQDEWIKFDDDKVSIV--TPEDILR 365

Query: 81  AFYFFNSE 88
                +  
Sbjct: 366 LSGGGDWH 373

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 397

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 2e-05
 Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 8/81 (9%)

Query: 14  IFENLSDVFHGCDNAAASTPLHQLVGVVTYYGK-----HYSTF-FFHTKLKVWIYFDDAT 67
           + E         +     + ++ L+GV+T+ G      HY  F         W  F+D  
Sbjct: 307 LEEYKKHFPPNLEKGENPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDK 366

Query: 68  VREVGPRWEQVRSAFYFFNSE 88
           V  V    E++ S      S+
Sbjct: 367 VSVV--EKEKIESLAGGGESD 385

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	152
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	99.48
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	99.37
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	99.37
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	99.31
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	99.29

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=3.5e-14  Score=108.20  Aligned_cols=73  Identities=21%  Similarity=0.294  Sum_probs=59.4

Q ss_pred             cceEeccccccccCCCCCCCCceeEEEEEEeecc----ceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhhcccce
Q psy13485         13 GIFENLSDVFHGCDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSE   88 (152)
Q Consensus        13 ~teLdLs~LF~~vd~~a~~~t~Y~LvgmVCYyG~----HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~r~qP~   88 (152)
                      ..++|++..-.. +   .....|.|+|||||+|.    ||.||++++++++|+.|||++|.+|.  |++|+.    -+|+
T Consensus       260 ~~~~dl~~~~~~-~---~~~~~Y~L~~vi~H~G~~~~GHY~~~ik~~~~~~W~~~nD~~V~~v~--~~~v~~----~~aY  329 (336)
T d2hd5a1         260 LRDLDLREFASE-N---TNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMS--SSQVRT----SDAY  329 (336)
T ss_dssp             SSCEECGGGBSS-S---SCCCEEEEEEEEEEEECSSCEEEEEEEECTTTCCEEEEETTEEEEEC--GGGSCC----TTEE
T ss_pred             cccccccccccC-C---CCCCeEeEEEEEEEeCCCCCceEEEEEEcCCCCeEEEEECCceeECC--HHHhcc----CCCE
Confidence            356777753221 1   22457999999999997    99999999999999999999999996  999853    5799


Q ss_pred             eeeeecC
Q psy13485         89 YTLYSAA   95 (152)
Q Consensus        89 vLFYEaa   95 (152)
                      |||||+|
T Consensus       330 iL~Y~r~  336 (336)
T d2hd5a1         330 LLFYELA  336 (336)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEcC
Confidence            9999985

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.1e-13  Score=107.72  Aligned_cols=79  Identities=20%  Similarity=0.225  Sum_probs=63.8

Q ss_pred             cceEeccccccccCCCCCCCCceeEEEEEEeecc----ceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhh--c--
Q psy13485         13 GIFENLSDVFHGCDNAAASTPLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFY--F--   84 (152)
Q Consensus        13 ~teLdLs~LF~~vd~~a~~~t~Y~LvgmVCYyG~----HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~--r--   84 (152)
                      ..+|||+..-..-+++  ....|.|.|||||.|.    ||+||+++..+++|+.|||+.|..|.  |++|+..|.  .  
T Consensus       221 p~~Ldl~~~~~~~~~~--~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~v~--~~ev~~~~~g~~~~  296 (347)
T d1nbfa_         221 PEQLPLDEFLQKTDPK--DPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCT--KEEAIEHNYGGHDD  296 (347)
T ss_dssp             CSEEECGGGBSSCCTT--SCCEEEEEEEEEEEEETTEEEEEEEECTTSSSCCEEEETTEEEECC--HHHHTGGGSCCCCS
T ss_pred             eeeecccccccccccc--CccceeeEEEEEecCCCCCCEEEEeeecCCCCEEEEEECCceEECC--HHHHHHhhcCCCcc
Confidence            4567777643322222  2357999999999997    99999998888999999999999996  999999885  1  


Q ss_pred             -------ccceeeeeecC
Q psy13485         85 -------FNSEYTLYSAA   95 (152)
Q Consensus        85 -------~qP~vLFYEaa   95 (152)
                             -.|+||||++.
T Consensus       297 ~~~~~~~~~aYiLfY~r~  314 (347)
T d1nbfa_         297 DLSVRHCTNAYMLVYIRE  314 (347)
T ss_dssp             CCSTTTTEEEEEEEEEEG
T ss_pred             ccccCCCCCEEEEEEEec
Confidence                   35899999984

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=4.6e-13  Score=103.29  Aligned_cols=56  Identities=23%  Similarity=0.446  Sum_probs=51.1

Q ss_pred             CceeEEEEEEeecc----ceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhhcccceeeeeec
Q psy13485         33 PLHQLVGVVTYYGK----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFYFFNSEYTLYSA   94 (152)
Q Consensus        33 t~Y~LvgmVCYyG~----HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~r~qP~vLFYEa   94 (152)
                      ..|+|+|||||.|.    ||.||+++..+++|+.|||+.|++|.  |++|+    .-+|+||||||
T Consensus       288 ~~Y~L~avi~H~G~~~~GHY~~~ik~~~~~~W~~~nD~~V~~v~--~~~v~----~~~aYlLfY~r  347 (348)
T d2gfoa1         288 KKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDIS--VSSVK----SSAAYILFYTS  347 (348)
T ss_dssp             CCBEEEEEEEEESCTTTCEEEEEEEETTTTEEEEEETTEEEECC--HHHHS----CTTEEEEEEEC
T ss_pred             CCEEEEEEEEEeCCCCCceEEEEEEeCCcCeEEEEECCcCeECC--HHHcc----CCCcEEEEEEe
Confidence            46999999999986    99999999999999999999999986  99986    35899999997

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.31  E-value=1.7e-12  Score=100.54  Aligned_cols=62  Identities=26%  Similarity=0.366  Sum_probs=53.3

Q ss_pred             CCceeEEEEEEeecc-----ceEEEEEee-ccceEEEEeCccceeeCCChHHHHHHhh---cccceeeeeecC
Q psy13485         32 TPLHQLVGVVTYYGK-----HYSTFFFHT-KLKVWIYFDDATVREVGPRWEQVRSAFY---FFNSEYTLYSAA   95 (152)
Q Consensus        32 ~t~Y~LvgmVCYyG~-----HY~aF~y~~-k~~rWv~fDDa~Vk~VG~~W~dVv~~C~---r~qP~vLFYEaa   95 (152)
                      ...|+|+|||||+|.     ||+||+++. +.++|+.|||++|..|.  +++|.+.+.   .-.|+|||||+.
T Consensus       325 ~~~Y~L~aVv~H~G~~~~~GHY~ay~r~~~~~~~W~~~nD~~V~~v~--~~~V~~~~~~~~~~~aYlLfY~r~  395 (397)
T d1vjva_         325 SCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVE--KEKIESLAGGGESDSALILMYKGF  395 (397)
T ss_dssp             SSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEEC--HHHHHGGGCCTTSCEEEEEEEEET
T ss_pred             CCCEEEEEEEEEecCCCCCcCeEEEEECCCCCCEEEEEECCCCEECC--HHHHHHhhCCCCCCeEEEEEEEec
Confidence            456999999999995     999999975 46899999999999998  888888775   245899999983

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=3.3e-12  Score=99.97  Aligned_cols=60  Identities=28%  Similarity=0.361  Sum_probs=51.9

Q ss_pred             CCceeEEEEEEeecc-----ceEEEEEeeccceEEEEeCccceeeCCChHHHHHHhh---cccceeeeeec
Q psy13485         32 TPLHQLVGVVTYYGK-----HYSTFFFHTKLKVWIYFDDATVREVGPRWEQVRSAFY---FFNSEYTLYSA   94 (152)
Q Consensus        32 ~t~Y~LvgmVCYyG~-----HY~aF~y~~k~~rWv~fDDa~Vk~VG~~W~dVv~~C~---r~qP~vLFYEa   94 (152)
                      ...|+|+|||||.|.     ||+||+++ +.++|+.|||.+|..|.  |++|++...   .-.|+||||.+
T Consensus       315 ~~~Y~L~avi~H~G~s~~~GHY~a~vk~-~~~~W~~~nD~~V~~v~--~~~v~~~~~~~~~~~aYiLfY~r  382 (383)
T d2ayna1         315 CGYYDLQAVLTHQGRSSSSGHYVSWVKR-KQDEWIKFDDDKVSIVT--PEDILRLSGGGDWHIAYVLLYGP  382 (383)
T ss_dssp             CSEEEEEEEEEEESSSTTSSEEEEEEEE-ETTEEEEEBTTBCCCBC--HHHHGGGGSSSSSCEEEEEEEEC
T ss_pred             CceEEEEEEEEEECCCCCCCCcEEEEEC-CCCeEEEEECCceEEeC--HHHHHHhhCCCCCCceEEEEEEE
Confidence            456999999999995     99999985 46799999999999996  999998775   34479999987