Psyllid ID: psy13547

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKNVKHNGNVPIDEIYNISRTMRPRSMARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAIDNGEIEVPEE
cccccccccEEEEEEEEEccccccccccccccccccccHHHHHHHHHHHHccccccEEEEEEEEEccEEEEEEEccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHcccccccccHHHHHHHHHHcccEEEEEEccccHHHHHHHHHccccccccc
cccccccccEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHcccccccEEEEEEEEEccEEEEEEcccHHHHHHHHHccccccccccccEcccccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHccccEEcccccHHHHHHHccccEEcccc
mppkfdptevKKVYLRCvggevgatsslapkigplglspkkvgDDIAKATGDWKGLKITVCLTIQNRQAAISVVPSAASLIIKALkepprdrkkvknvkhngnvpideiynisrtmrprsmaRKFVGTVKEVLGTCqsvgatvegrsARDIIEAIdngeievpee
mppkfdptevKKVYLRCVGGevgatsslapkigplglspkKVGDDIAKATGDWKGLKITVCLTIQNRQAAISVVPSAASLIIKalkepprdrkkvknvkhngnvpideiynisrtmrprSMARKFVGTVKEVLgtcqsvgatvegrsardiieaidngeievpee
MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQAAISVVPSAASLIIKALKEPPRDRkkvknvkhngnvPIDEIYNISRTMRPRSMARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAIDNGEIEVPEE
*********VKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQAAISVVPSAASLIIKAL****************GNVPIDEIYNISRTMRPRSMARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAI**********
******PTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQAAISVVPSAASLI*********************NVPIDEIYNISRTMRPRSMARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAIDNGEIEVPE*
MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKNVKHNGNVPIDEIYNISRTMRPRSMARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAIDNGEIEVPEE
*PPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKNVKHNGNVPIDEIYNISRTMRPRSMARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAIDNGEIEV***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKNVKHNGNVPIDEIYNISRTMRPRSMARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAIDNGEIEVPEE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query165 2.2.26 [Sep-21-2011]
P61866165 60S ribosomal protein L12 yes N/A 1.0 1.0 0.751 2e-68
P61865165 60S ribosomal protein L12 N/A N/A 1.0 1.0 0.751 2e-68
P23358165 60S ribosomal protein L12 yes N/A 0.987 0.987 0.754 3e-68
P35979165 60S ribosomal protein L12 yes N/A 0.987 0.987 0.754 7e-68
P30050165 60S ribosomal protein L12 yes N/A 0.987 0.987 0.748 1e-67
E2RR58165 60S ribosomal protein L12 yes N/A 0.987 0.987 0.748 1e-67
P61284165 60S ribosomal protein L12 yes N/A 0.987 0.987 0.748 1e-67
Q6QMZ7165 60S ribosomal protein L12 N/A N/A 0.987 0.987 0.748 2e-67
O75000165 60S ribosomal protein L12 yes N/A 1.0 1.0 0.690 2e-63
Q9C285165 60S ribosomal protein L12 N/A N/A 1.0 1.0 0.696 5e-62
>sp|P61866|RL12_CAEEL 60S ribosomal protein L12 OS=Caenorhabditis elegans GN=rpl-12 PE=3 SV=1 Back     alignment and function desciption
 Score =  258 bits (658), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 124/165 (75%), Positives = 143/165 (86%)

Query: 1   MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
           MPPKFDPTE+K VYLRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T 
Sbjct: 1   MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60

Query: 61  CLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKNVKHNGNVPIDEIYNISRTMRPRS 120
            LTIQNR A I VVPSAASLI+K LKEPPRDRKKVKNVKHNG++ +D I  I+R MRPRS
Sbjct: 61  KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRS 120

Query: 121 MARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAIDNGEIEVPEE 165
           MA+K  GTVKE+LGT QSVG T++G+   DIIE+I NGEIE+P +
Sbjct: 121 MAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEIPAQ 165
Binds directly to 26S ribosomal RNA.
Caenorhabditis elegans (taxid: 6239)
>sp|P61865|RL12_CAEBR 60S ribosomal protein L12 OS=Caenorhabditis briggsae GN=rpl-12 PE=3 SV=1 Back     alignment and function description
>sp|P23358|RL12_RAT 60S ribosomal protein L12 OS=Rattus norvegicus GN=Rpl12 PE=2 SV=1 Back     alignment and function description
>sp|P35979|RL12_MOUSE 60S ribosomal protein L12 OS=Mus musculus GN=Rpl12 PE=1 SV=2 Back     alignment and function description
>sp|P30050|RL12_HUMAN 60S ribosomal protein L12 OS=Homo sapiens GN=RPL12 PE=1 SV=1 Back     alignment and function description
>sp|E2RR58|RL12_CANFA 60S ribosomal protein L12 OS=Canis familiaris GN=RPL12 PE=1 SV=1 Back     alignment and function description
>sp|P61284|RL12_BOVIN 60S ribosomal protein L12 OS=Bos taurus GN=RPL12 PE=2 SV=1 Back     alignment and function description
>sp|Q6QMZ7|RL12_CHILA 60S ribosomal protein L12 OS=Chinchilla lanigera GN=RPL12 PE=2 SV=1 Back     alignment and function description
>sp|O75000|RL12_SCHPO 60S ribosomal protein L12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpl1201 PE=1 SV=1 Back     alignment and function description
>sp|Q9C285|RL12_NEUCR 60S ribosomal protein L12 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=rpl-12 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query165
242009369165 60S ribosomal protein L12, putative [Ped 1.0 1.0 0.836 2e-75
58392254165 AGAP010065-PA [Anopheles gambiae str. PE 1.0 1.0 0.818 2e-74
114864842165 ribosomal protein L12 [Anopheles funestu 1.0 1.0 0.812 1e-73
62083511165 ribosomal protein L12 [Lysiphlebus testa 1.0 1.0 0.818 3e-73
156549881165 PREDICTED: 60S ribosomal protein L12-lik 1.0 1.0 0.818 3e-73
170059827165 60S ribosomal protein L12 [Culex quinque 1.0 1.0 0.8 5e-73
187179331165 ribosomal protein L12 [Acyrthosiphon pis 1.0 1.0 0.818 9e-73
157142146165 60S ribosomal protein L12 [Aedes aegypti 1.0 1.0 0.8 2e-72
195382531165 GJ20445 [Drosophila virilis] gi|19414478 1.0 1.0 0.812 4e-72
195122700165 GI18857 [Drosophila mojavensis] gi|19391 1.0 1.0 0.812 5e-72
>gi|242009369|ref|XP_002425460.1| 60S ribosomal protein L12, putative [Pediculus humanus corporis] gi|212509296|gb|EEB12722.1| 60S ribosomal protein L12, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 138/165 (83%), Positives = 150/165 (90%)

Query: 1   MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
           MPPKFDPTEVK VYL+CVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKAT DWKGLKITV
Sbjct: 1   MPPKFDPTEVKTVYLKCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATADWKGLKITV 60

Query: 61  CLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKNVKHNGNVPIDEIYNISRTMRPRS 120
           CLTIQNRQA ISVVPSAASLIIKALKEPPRDRKKVKN+KHNGN+  DEI  I++TMRPRS
Sbjct: 61  CLTIQNRQATISVVPSAASLIIKALKEPPRDRKKVKNIKHNGNLSFDEIVQIAKTMRPRS 120

Query: 121 MARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAIDNGEIEVPEE 165
           M+RK  GTVKE+LGTCQSVG TVEGR   D+I+ I+ GEIE+P+E
Sbjct: 121 MSRKLEGTVKEILGTCQSVGCTVEGRPPHDVIDQINGGEIEIPDE 165

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|58392254|ref|XP_319222.2| AGAP010065-PA [Anopheles gambiae str. PEST] gi|55236286|gb|EAA13967.2| AGAP010065-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|114864842|gb|ABI83774.1| ribosomal protein L12 [Anopheles funestus] Back     alignment and taxonomy information
>gi|62083511|gb|AAX62480.1| ribosomal protein L12 [Lysiphlebus testaceipes] gi|62083513|gb|AAX62481.1| ribosomal protein L12 variant 1 [Lysiphlebus testaceipes] Back     alignment and taxonomy information
>gi|156549881|ref|XP_001605642.1| PREDICTED: 60S ribosomal protein L12-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|170059827|ref|XP_001865531.1| 60S ribosomal protein L12 [Culex quinquefasciatus] gi|167878476|gb|EDS41859.1| 60S ribosomal protein L12 [Culex quinquefasciatus] Back     alignment and taxonomy information
>gi|187179331|ref|NP_001119643.1| ribosomal protein L12 [Acyrthosiphon pisum] gi|89574483|gb|ABD76372.1| putative ribosomal protein L12e [Acyrthosiphon pisum] gi|239788182|dbj|BAH70782.1| ACYPI000059 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|157142146|ref|XP_001647834.1| 60S ribosomal protein L12 [Aedes aegypti] gi|94468584|gb|ABF18141.1| 40S ribosomal protein S2 [Aedes aegypti] gi|108868271|gb|EAT32502.1| AAEL014562-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|195382531|ref|XP_002049983.1| GJ20445 [Drosophila virilis] gi|194144780|gb|EDW61176.1| GJ20445 [Drosophila virilis] Back     alignment and taxonomy information
>gi|195122700|ref|XP_002005849.1| GI18857 [Drosophila mojavensis] gi|193910917|gb|EDW09784.1| GI18857 [Drosophila mojavensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query165
FB|FBgn0034968165 RpL12 "Ribosomal protein L12" 1.0 1.0 0.745 1.5e-60
WB|WBGene00004424165 rpl-12 [Caenorhabditis elegans 1.0 1.0 0.690 3.6e-57
ZFIN|ZDB-GENE-030131-5297165 rpl12 "ribosomal protein L12" 1.0 1.0 0.684 1.6e-56
UNIPROTKB|P61284165 RPL12 "60S ribosomal protein L 0.987 0.987 0.699 2.5e-56
UNIPROTKB|E2RR58165 RPL12 "60S ribosomal protein L 0.987 0.987 0.699 2.5e-56
UNIPROTKB|P30050165 RPL12 "60S ribosomal protein L 0.987 0.987 0.699 2.5e-56
UNIPROTKB|Q6QAS5191 RPL12 "60S ribosomal protein L 0.987 0.853 0.699 2.5e-56
UNIPROTKB|E1BTG1169 RPL12 "Uncharacterized protein 0.987 0.964 0.703 3.3e-56
RGD|1565106165 Rpl12 "ribosomal protein L12" 0.987 0.987 0.699 3.3e-56
RGD|1595128191 LOC685320 "similar to 60S ribo 0.987 0.853 0.699 3.3e-56
FB|FBgn0034968 RpL12 "Ribosomal protein L12" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 123/165 (74%), Positives = 134/165 (81%)

Query:     1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
             MPPKFDPTEVK VYLRCVGGEVGATSSLAPKIGPLGLSPKK+GDDIAKAT DWKGLKITV
Sbjct:     1 MPPKFDPTEVKLVYLRCVGGEVGATSSLAPKIGPLGLSPKKIGDDIAKATSDWKGLKITV 60

Query:    61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRXXXXXXXXXXXXPIDEIYNISRTMRPRS 120
             CLTIQNRQAAISVVPSAASLIIKALKEPPRDR              ++I  I+R MRPRS
Sbjct:    61 CLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKQKNIKHSGNIGFEDILAIARVMRPRS 120

Query:   121 MARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAIDNGEIEVPEE 165
             MAR+  GT KEVLGT QSVG TV+G+   D+I+ ++ G IEVP E
Sbjct:   121 MARELKGTCKEVLGTAQSVGCTVDGKHPHDVIDELNEGSIEVPAE 165
GO:0006412 "translation" evidence=ISS
GO:0022625 "cytosolic large ribosomal subunit" evidence=ISS
GO:0003735 "structural constituent of ribosome" evidence=ISS;IDA
GO:0005811 "lipid particle" evidence=IDA
GO:0005840 "ribosome" evidence=IDA
GO:0000022 "mitotic spindle elongation" evidence=IMP
WB|WBGene00004424 rpl-12 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-5297 rpl12 "ribosomal protein L12" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|P61284 RPL12 "60S ribosomal protein L12" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RR58 RPL12 "60S ribosomal protein L12" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P30050 RPL12 "60S ribosomal protein L12" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q6QAS5 RPL12 "60S ribosomal protein L12" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BTG1 RPL12 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1565106 Rpl12 "ribosomal protein L12" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|1595128 LOC685320 "similar to 60S ribosomal protein L12" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q46EU7RL11_METBFNo assigned EC number0.33330.84240.8633yesN/A
P62445RL11_METMPNo assigned EC number0.30510.87870.9119yesN/A
O57779RL11_PYRHONo assigned EC number0.35170.82420.8292yesN/A
P35025RL11_SULACNo assigned EC number0.30620.87870.8529yesN/A
A2STU0RL11_METLZNo assigned EC number0.31460.84240.8853yesN/A
O29712RL11_ARCFUNo assigned EC number0.36870.92120.9681yesN/A
A9A582RL11_NITMSNo assigned EC number0.28280.89090.9245yesN/A
P30050RL12_HUMANNo assigned EC number0.74840.98780.9878yesN/A
O50003RL12_PRUARNo assigned EC number0.63410.98780.9819N/AN/A
Q54J50RL12_DICDINo assigned EC number0.64630.99390.9879yesN/A
P54030RL11_METJANo assigned EC number0.29670.83630.8571yesN/A
C5A426RL11_THEGJNo assigned EC number0.32630.83630.8363yesN/A
Q5JH34RL11_PYRKONo assigned EC number0.32870.82420.8242yesN/A
O75000RL12_SCHPONo assigned EC number0.69091.01.0yesN/A
Q9V2S3RL11_PYRABNo assigned EC number0.35170.82420.8292yesN/A
E2RR58RL12_CANFANo assigned EC number0.74840.98780.9878yesN/A
Q8TZK0RL11_PYRFUNo assigned EC number0.34390.88480.8902yesN/A
Q9LFH5RL122_ARATHNo assigned EC number0.64840.99390.9879yesN/A
A4FW91RL11_METM5No assigned EC number0.29370.84240.8742yesN/A
A9A9N0RL11_METM6No assigned EC number0.28750.84240.8742yesN/A
Q0W049RL11_UNCMANo assigned EC number0.27580.85450.8924yesN/A
P61284RL12_BOVINNo assigned EC number0.74840.98780.9878yesN/A
Q971J0RL11_SULTONo assigned EC number0.29740.87870.8529yesN/A
Q2FQ31RL11_METHJNo assigned EC number0.32860.83030.8670yesN/A
P35979RL12_MOUSENo assigned EC number0.75460.98780.9878yesN/A
P50883RL121_ARATHNo assigned EC number0.64840.99390.9879yesN/A
A4YH87RL11_METS5No assigned EC number0.28380.89690.8809yesN/A
P50884RL12_CHLRENo assigned EC number0.64100.93930.9872N/AN/A
Q97BN1RL11_THEVONo assigned EC number0.29330.87270.9113yesN/A
Q8TI82RL11_METACNo assigned EC number0.29250.84240.8633yesN/A
B8GIY2RL11_METPENo assigned EC number0.31780.81810.8544yesN/A
Q2NEW0RL11_METSTNo assigned EC number0.28080.85450.8812yesN/A
P0CX54RL12B_YEASTNo assigned EC number0.68290.99390.9939yesN/A
Q9HL70RL11_THEACNo assigned EC number0.27700.86060.9102yesN/A
Q6L1Y0RL11_PICTONo assigned EC number0.30400.86060.9161yesN/A
P0CX53RL12A_YEASTNo assigned EC number0.68290.99390.9939yesN/A
Q9FF52RL123_ARATHNo assigned EC number0.63851.00.9939noN/A
A6VH19RL11_METM7No assigned EC number0.28750.84240.8742yesN/A
Q6QMZ7RL12_CHILANo assigned EC number0.74840.98780.9878N/AN/A
P23358RL12_RATNo assigned EC number0.75460.98780.9878yesN/A
Q8SR84RL12_ENCCUNo assigned EC number0.52760.95750.9518yesN/A
A3CSJ5RL11_METMJNo assigned EC number0.33770.81810.8544yesN/A
A6UQ78RL11_METVSNo assigned EC number0.30370.85450.8867yesN/A
B6YSX7RL11_THEONNo assigned EC number0.34240.82420.8343yesN/A
Q8PY53RL11_METMANo assigned EC number0.31290.84240.8633yesN/A
Q9C285RL12_NEUCRNo assigned EC number0.69691.01.0N/AN/A
Q8TX52RL11_METKANo assigned EC number0.28280.87870.8734yesN/A
P61865RL12_CAEBRNo assigned EC number0.75151.01.0N/AN/A
P61866RL12_CAEELNo assigned EC number0.75151.01.0yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
PLN03072166 PLN03072, PLN03072, 60S ribosomal protein L12; Pro 1e-85
PTZ00105140 PTZ00105, PTZ00105, 60S ribosomal protein L12; Pro 8e-79
cd00349131 cd00349, Ribosomal_L11, Ribosomal protein L11 8e-47
smart00649132 smart00649, RL11, Ribosomal protein L11/L12 3e-44
COG0080141 COG0080, RplK, Ribosomal protein L11 [Translation, 1e-32
PRK01143163 PRK01143, rpl11p, 50S ribosomal protein L11P; Vali 4e-22
pfam0394659 pfam03946, Ribosomal_L11_N, Ribosomal protein L11, 2e-16
pfam0029869 pfam00298, Ribosomal_L11, Ribosomal protein L11, R 2e-08
>gnl|CDD|178621 PLN03072, PLN03072, 60S ribosomal protein L12; Provisional Back     alignment and domain information 
 Score =  248 bits (634), Expect = 1e-85
 Identities = 112/166 (67%), Positives = 142/166 (85%), Gaps = 1/166 (0%)

Query: 1   MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATG-DWKGLKIT 59
           MPPK DP++V +VY+R  GGEVGA SSLAPKIGPLGLSPKK+G+DIAK T  DWKGL++T
Sbjct: 1   MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVT 60

Query: 60  VCLTIQNRQAAISVVPSAASLIIKALKEPPRDRKKVKNVKHNGNVPIDEIYNISRTMRPR 119
           V LT+QNRQA +SVVPSAA+L+IKALKEP RDRKKVKN+KHNGN+ +D++  I++ MRPR
Sbjct: 61  VKLTVQNRQAKVSVVPSAAALVIKALKEPERDRKKVKNIKHNGNISLDDVIEIAKIMRPR 120

Query: 120 SMARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAIDNGEIEVPEE 165
           SMA++  GTVKE+LGTC SVG TV+G+  +D+ + ID+GE+E+PE 
Sbjct: 121 SMAKELAGTVKEILGTCVSVGCTVDGKDPKDLQQEIDDGEVEIPEA 166

Length = 166
>gnl|CDD|240269 PTZ00105, PTZ00105, 60S ribosomal protein L12; Provisional Back     alignment and domain information
>gnl|CDD|100101 cd00349, Ribosomal_L11, Ribosomal protein L11 Back     alignment and domain information
>gnl|CDD|197819 smart00649, RL11, Ribosomal protein L11/L12 Back     alignment and domain information
>gnl|CDD|223158 COG0080, RplK, Ribosomal protein L11 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234908 PRK01143, rpl11p, 50S ribosomal protein L11P; Validated Back     alignment and domain information
>gnl|CDD|217808 pfam03946, Ribosomal_L11_N, Ribosomal protein L11, N-terminal domain Back     alignment and domain information
>gnl|CDD|189492 pfam00298, Ribosomal_L11, Ribosomal protein L11, RNA binding domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 165
PLN03072166 60S ribosomal protein L12; Provisional 100.0
PRK01143163 rpl11p 50S ribosomal protein L11P; Validated 100.0
PTZ00105140 60S ribosomal protein L12; Provisional 100.0
COG0080141 RplK Ribosomal protein L11 [Translation, ribosomal 100.0
TIGR01632140 L11_bact 50S ribosomal protein L11. This model rep 100.0
PRK00140141 rplK 50S ribosomal protein L11; Validated 100.0
CHL00127140 rpl11 ribosomal protein L11; Validated 100.0
smart00649132 RL11 Ribosomal protein L11/L12. 100.0
KOG0886|consensus167 100.0
cd00349131 Ribosomal_L11 Ribosomal protein L11. Ribosomal pro 100.0
PRK14539196 50S ribosomal protein L11/unknown domain fusion pr 100.0
PTZ00321 342 ribosomal protein L11; Provisional 100.0
KOG3257|consensus168 100.0
PF0394660 Ribosomal_L11_N: Ribosomal protein L11, N-terminal 99.94
PF0029869 Ribosomal_L11: Ribosomal protein L11, RNA binding 99.94
>PLN03072 60S ribosomal protein L12; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.9e-68  Score=425.88  Aligned_cols=163  Identities=65%  Similarity=1.107  Sum_probs=155.2

Q ss_pred             CCCCCCCCceeEEEEEEeccccCCCCCCccccCCCCCChHHHHHHHHHHhcC-CCCceeEEEEEEeccceEEEEeCCHHH
Q psy13547          1 MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGD-WKGLKITVCLTIQNRQAAISVVPSAAS   79 (165)
Q Consensus         1 m~~k~~~~~~~~vkl~v~aG~A~p~PplgP~LG~~Gin~~~f~k~fN~~T~~-~~G~~vpV~itv~drsf~~~v~Pp~s~   79 (165)
                      ||||||+++.++|+|+|+||+|+|+|||||+|||+|||+|+||++||++|++ |+|++|||+|||.+|+|+|+++||+|+
T Consensus         1 m~~~~~~~~~~~i~l~v~aG~A~P~PplGPaLG~~GvNi~~f~k~fN~~T~~~~~G~~VpV~Itv~~rsf~~~v~Pp~s~   80 (166)
T PLN03072          1 MPPKLDPSQVVEVYVRVTGGEVGAASSLAPKIGPLGLSPKKIGEDIAKETAKDWKGLRVTVKLTVQNRQAKVSVVPSAAA   80 (166)
T ss_pred             CCCCCCCCccEEEEEEEEcCccCCCCCCccccccCCCCHHHHHHHHHHHhhhhcCCCeEEEEEEEECCeEEEEeCCCHHH
Confidence            9999999999999999999999999999999999999999999999999996 999999999999779999999999999


Q ss_pred             HHHHHhC--CCCCCCCCcccccceeeecHHHHHHHHHHhcccccCcChhhhhhHHhhccccceeEecCCChHHHHHHhhC
Q psy13547         80 LIIKALK--EPPRDRKKVKNVKHNGNVPIDEIYNISRTMRPRSMARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAIDN  157 (165)
Q Consensus        80 Li~ka~g--kgs~~~~k~~n~~~~G~it~~~v~eIA~~k~~~~~~~~l~~~vk~VlGTa~SmGi~V~g~~p~ev~~~i~~  157 (165)
                      ||+|+||  ++++++  ..|.+++|+||++||+|||+.|++|+++++|+++||+|+||||||||+|+|++|+||+++||+
T Consensus        81 LLkKa~g~~kgs~~~--~~~~~~vG~it~~qv~eIA~~K~~dl~a~~l~~avk~VlGTarSmGi~V~gk~pkev~~~i~~  158 (166)
T PLN03072         81 LVIKALKEPERDRKK--VKNIKHNGNISLDDVIEIAKIMRPRSMAKELAGTVKEILGTCVSVGCTVDGKDPKDLQQEIDD  158 (166)
T ss_pred             HHHHHhCCCCCCCcc--CCCCeeeeeecHHHHHHHHHHHHHHhCcccHHHHHHHhHheeeeCeEEEeCCCHHHHHHHHhC
Confidence            9999999  566653  223489999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeeccCC
Q psy13547        158 GEIEVPEE  165 (165)
Q Consensus       158 G~~~~p~~  165 (165)
                      |+|+||++
T Consensus       159 G~~~~p~~  166 (166)
T PLN03072        159 GEVEIPEA  166 (166)
T ss_pred             CCeeCCCC
Confidence            99999985

>PRK01143 rpl11p 50S ribosomal protein L11P; Validated Back     alignment and domain information
>PTZ00105 60S ribosomal protein L12; Provisional Back     alignment and domain information
>COG0080 RplK Ribosomal protein L11 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR01632 L11_bact 50S ribosomal protein L11 Back     alignment and domain information
>PRK00140 rplK 50S ribosomal protein L11; Validated Back     alignment and domain information
>CHL00127 rpl11 ribosomal protein L11; Validated Back     alignment and domain information
>smart00649 RL11 Ribosomal protein L11/L12 Back     alignment and domain information
>KOG0886|consensus Back     alignment and domain information
>cd00349 Ribosomal_L11 Ribosomal protein L11 Back     alignment and domain information
>PRK14539 50S ribosomal protein L11/unknown domain fusion protein; Provisional Back     alignment and domain information
>PTZ00321 ribosomal protein L11; Provisional Back     alignment and domain information
>KOG3257|consensus Back     alignment and domain information
>PF03946 Ribosomal_L11_N: Ribosomal protein L11, N-terminal domain; InterPro: IPR020784 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF00298 Ribosomal_L11: Ribosomal protein L11, RNA binding domain; InterPro: IPR020783 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
2zkr_i165 Structure Of A Mammalian Ribosomal 60s Subunit With 5e-62
3izs_J165 Localization Of The Large Subunit Ribosomal Protein 2e-54
3izr_J166 Localization Of The Large Subunit Ribosomal Protein 5e-54
3jyw_K138 Structure Of The 60s Proteins For Eukaryotic Riboso 1e-43
1s1i_K131 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 3e-41
3zf7_M164 High-resolution Cryo-electron Microscopy Structure 3e-40
1wib_A92 Solution Structure Of The N-Terminal Domain From Mo 2e-34
3j21_H164 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-11
2otj_I161 13-Deoxytedanolide Bound To The Large Subunit Of Ha 3e-08
1s72_I162 Refined Crystal Structure Of The Haloarcula Marismo 3e-08
>pdb|2ZKR|II Chain i, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 165 Back     alignment and structure 
Iteration: 1

 Score =  233 bits (593), Expect = 5e-62,   Method: Compositional matrix adjust.
 Identities = 114/163 (69%), Positives = 129/163 (79%)
Query: 1   MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
           MPPKFDP E+K VYLRC GGEVGATS+LAPKIGPLGLSPKKVGDDIAKATGDWKGL+ITV
Sbjct: 1   MPPKFDPNEIKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 60
Query: 61  CLTIQNRQAAISVVPSAASLIIKALKEPPRDRXXXXXXXXXXXXPIDEIYNISRTMRPRS 120
            LTIQNRQA I VVPSA++LIIKALKEPPRDR              DEI NI+R MR RS
Sbjct: 61  KLTIQNRQAQIEVVPSASALIIKALKEPPRDRKKQKNIKHSGNITFDEIVNIARQMRHRS 120
Query: 121 MARKFVGTVKEVLGTCQSVGATVEGRSARDIIEAIDNGEIEVP 163
           +AR+  GT+KE+LGT QSVG  V+GR   DII+ I++G +E P
Sbjct: 121 LARELSGTIKEILGTAQSVGCNVDGRHPHDIIDDINSGAVECP 163
>pdb|3IZS|J Chain J, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 165 Back     alignment and structure
>pdb|3IZR|J Chain J, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 166 Back     alignment and structure
>pdb|3JYW|K Chain K, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 138 Back     alignment and structure
>pdb|1S1I|K Chain K, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 131 Back     alignment and structure
>pdb|3ZF7|M Chain M, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 164 Back     alignment and structure
>pdb|1WIB|A Chain A, Solution Structure Of The N-Terminal Domain From Mouse Hypothetical Protein Bab22488 Length = 92 Back     alignment and structure
>pdb|3J21|H Chain H, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 164 Back     alignment and structure
>pdb|2OTJ|I Chain I, 13-Deoxytedanolide Bound To The Large Subunit Of Haloarcula Marismortui Length = 161 Back     alignment and structure
>pdb|1S72|I Chain I, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 162 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
3iz5_J166 60S ribosomal protein L12 (L11P); eukaryotic ribos 1e-53
2zkr_i165 60S ribosomal protein L12; protein-RNA complex, 60 2e-53
1vq8_I162 50S ribosomal protein L11P; ribosome 50S, protein- 5e-47
1wib_A92 60S ribosomal protein L12; N-terminal domain, stru 1e-39
3bbo_K224 Ribosomal protein L11; large ribosomal subunit, sp 3e-31
3egv_B146 50S ribosomal protein L11, ribosomal protein L11 m 3e-27
1mms_A140 Protein (ribosomal protein L11); RNA-protein compl 7e-24
3r8s_I141 50S ribosomal protein L11; protein biosynthesis, R 7e-22
2ftc_G145 L11MT, MRP-L11, 39S ribosomal protein L11, mitocho 2e-16
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1hc8_A76 Ribosomal protein L11; ribosome, ribosomal RNA, te 6e-05
>2zkr_i 60S ribosomal protein L12; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} PDB: 3izc_J 3izs_J 3j16_H* 3o5h_L 3jyw_K 1s1i_K Length = 165 Back     alignment and structure
>1vq8_I 50S ribosomal protein L11P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: a.4.7.1 PDB: 1vq4_I* 1vq5_I* 1vq6_I* 1vq7_I* 1s72_I* 1vq9_I* 1vqk_I* 1vql_I* 1vqm_I* 1vqn_I* 1vqo_I* 1vqp_I* 1yhq_I* 1yi2_I* 1yij_I* 1yit_I* 1yj9_I* 1yjn_I* 1yjw_I* 2otl_I* ... Length = 162 Back     alignment and structure
>1wib_A 60S ribosomal protein L12; N-terminal domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Mus musculus} SCOP: d.47.1.1 Length = 92 Back     alignment and structure
>3bbo_K Ribosomal protein L11; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 224 Back     alignment and structure
>3egv_B 50S ribosomal protein L11, ribosomal protein L11 methyltransferase; post-translational modification, multiple methyltransferase; HET: SAH 4MM; 1.75A {Thermus thermophilus} SCOP: d.47.1.1 PDB: 2e34_A 2e35_A 2e36_A 2h8w_A 2hgj_L 2hgq_L 2hgu_L 2j01_K 2j03_K 2jl6_K 2jl8_K 2klm_A 2nxn_B 2wh2_K 2wh4_K 2wrj_K 2wrl_K 2x9s_K 2x9u_K 2xtg_K ... Length = 146 Back     alignment and structure
>1mms_A Protein (ribosomal protein L11); RNA-protein complex, RNA, ribosome, translocation, thiostrep; 2.57A {Thermotoga maritima} SCOP: a.4.7.1 d.47.1.1 PDB: 1mvr_L 1oln_A* 1giy_L 1mj1_L* 1ml5_l* 1yl3_L 2b66_K 2b9n_K 2b9p_K 2jq7_A* 2k3f_A 1eg0_K 1jqm_A 1jqs_A 1jqt_A 1r2w_A 1r2x_A 487d_L 1pn8_L 1pn7_L Length = 140 Back     alignment and structure
>3r8s_I 50S ribosomal protein L11; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_G 1p86_G 2awb_I 2aw4_I 2i2v_I 2j28_I 2i2t_I* 2qao_I* 2qba_I* 2qbc_I* 2qbe_I 2qbg_I 2qbi_I* 2qbk_I* 2qov_I 2qox_I 2qoz_I* 2qp1_I* 2rdo_I 2vhm_I ... Length = 141 Back     alignment and structure
>2ftc_G L11MT, MRP-L11, 39S ribosomal protein L11, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_G Length = 145 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1hc8_A Ribosomal protein L11; ribosome, ribosomal RNA, tertiary structure, RNA-protein; HET: GTP; 2.8A {Bacillus stearothermophilus} SCOP: a.4.7.1 PDB: 1y39_A* 1aci_A 1fow_A 1fox_A 1foy_A 2fow_A Length = 76 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 165
d1wiba_92 d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mu 7e-32
d1vqoi170 a.4.7.1 (I:71-140) Ribosomal protein L11, C-termin 5e-14
d1hc8a_74 a.4.7.1 (A:) Ribosomal protein L11, C-terminal dom 2e-04
d2gycg168 a.4.7.1 (G:73-140) Ribosomal protein L11, C-termin 3e-04
d1mmsa170 a.4.7.1 (A:71-140) Ribosomal protein L11, C-termin 0.003
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus musculus) [TaxId: 10090]} Length = 92 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal L11/L12e N-terminal domain
superfamily: Ribosomal L11/L12e N-terminal domain
family: Ribosomal L11/L12e N-terminal domain
domain: 60S ribosomal protein L12
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  107 bits (269), Expect = 7e-32
 Identities = 69/84 (82%), Positives = 74/84 (88%)

Query: 1  MPPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITV 60
           PPKFDP EVK VYLRC GGEVGATS+LAPKIGPLGLSPKKVGDDIAKATGDWKGL+ITV
Sbjct: 7  GPPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITV 66

Query: 61 CLTIQNRQAAISVVPSAASLIIKA 84
           LTIQNRQA I VVPSA++L   +
Sbjct: 67 KLTIQNRQAQIEVVPSASALSGPS 90
>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 70 Back     information, alignment and structure
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 74 Back     information, alignment and structure
>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 68 Back     information, alignment and structure
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 70 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query165
d1wiba_92 60S ribosomal protein L12 {Mouse (Mus musculus) [T 100.0
d1mmsa263 Ribosomal protein L11, N-terminal domain {Thermoto 99.96
d3cjsb170 Ribosomal protein L11, N-terminal domain {Thermus 99.96
d1hc8a_74 Ribosomal protein L11, C-terminal domain {Bacillus 99.95
d1xbpg172 Ribosomal protein L11, C-terminal domain {Deinococ 99.95
d2gycg271 Ribosomal protein L11, N-terminal domain {Escheric 99.95
d1vqoi170 Ribosomal protein L11, C-terminal domain {Archaeon 99.95
d1mmsa170 Ribosomal protein L11, C-terminal domain {Thermoto 99.94
d2gycg168 Ribosomal protein L11, C-terminal domain {Escheric 99.93
d3cjrb167 Ribosomal protein L11, C-terminal domain {Thermus 99.92
>d1wiba_ d.47.1.1 (A:) 60S ribosomal protein L12 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal L11/L12e N-terminal domain
superfamily: Ribosomal L11/L12e N-terminal domain
family: Ribosomal L11/L12e N-terminal domain
domain: 60S ribosomal protein L12
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=6.4e-39  Score=231.38  Aligned_cols=85  Identities=81%  Similarity=1.211  Sum_probs=83.9

Q ss_pred             CCCCCCCceeEEEEEEeccccCCCCCCccccCCCCCChHHHHHHHHHHhcCCCCceeEEEEEEeccceEEEEeCCHHHHH
Q psy13547          2 PPKFDPTEVKKVYLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATGDWKGLKITVCLTIQNRQAAISVVPSAASLI   81 (165)
Q Consensus         2 ~~k~~~~~~~~vkl~v~aG~A~p~PplgP~LG~~Gin~~~f~k~fN~~T~~~~G~~vpV~itv~drsf~~~v~Pp~s~Li   81 (165)
                      |||||++++++|+|+|+||+|+|+|||||+|||+|||+|+||++||++|++|+|++|||+|||+||+|+|+|+||+|+||
T Consensus         8 ppK~dp~~v~~Ikl~v~gG~A~p~PplgP~LGp~Gini~~f~k~fN~~T~~~kG~~VpV~itV~dRsf~i~V~PpaS~L~   87 (92)
T d1wiba_           8 PPKFDPNEVKVVYLRCTGGEVGATSALAPKIGPLGLSPKKVGDDIAKATGDWKGLRITVKLTIQNRQAQIEVVPSASALS   87 (92)
T ss_dssp             CCCCCSSSCEEEEEEEETTCCCCSSCSHHHHTTTCSCHHHHHHHHHHHTTTTTTSEEEEEEEEETTEEECCBCSCCCCCC
T ss_pred             CCCCCCCceEEEEEEEecCccCCCCCccccccccCCCHHHHHHHHHHhhhhccCCeEeEEEEEeCceEEEEEcCCHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhC
Q psy13547         82 IKALK   86 (165)
Q Consensus        82 ~ka~g   86 (165)
                      ++|+|
T Consensus        88 ~~aaG   92 (92)
T d1wiba_          88 GPSSG   92 (92)
T ss_dssp             CCSCC
T ss_pred             HHhcC
Confidence            99987
>d1mmsa2 d.47.1.1 (A:8-70) Ribosomal protein L11, N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d3cjsb1 d.47.1.1 (B:1-70) Ribosomal protein L11, N-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1hc8a_ a.4.7.1 (A:) Ribosomal protein L11, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1xbpg1 a.4.7.1 (G:72-143) Ribosomal protein L11, C-terminal domain {Deinococcus radiodurans [TaxId: 1299]} Back     information, alignment and structure
>d2gycg2 d.47.1.1 (G:2-72) Ribosomal protein L11, N-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1vqoi1 a.4.7.1 (I:71-140) Ribosomal protein L11, C-terminal domain {Archaeon Haloarcula marismortui [TaxId: 2238]} Back     information, alignment and structure
>d1mmsa1 a.4.7.1 (A:71-140) Ribosomal protein L11, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2gycg1 a.4.7.1 (G:73-140) Ribosomal protein L11, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3cjrb1 a.4.7.1 (B:71-137) Ribosomal protein L11, C-terminal domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure