Psyllid ID: psy13556


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
CIDERGGGVFRSGELVPRFGPCEECRCTDGTVVCSMMQCEIKPGCQTIQRPNQCCPEFKCECEHNGKVYNNGEKLNSTLTPCQVCYCRGGALMCTHFTCFTRDDCQGRTLPGTCCPNYDHCPPLAHD
cEEccccEEEccccEEccccccccEEEccccEEEEcccccccccccccccccccccccccccEEccEEEccccEEEccccccccEEEcccEEEEEcccccccccccccccccccccccccccccccc
cccccccEEccccccccccccccEEEEcccEEEEEcccccccccccccccccccccccccccEEccEEEccccEcccccccccEEEEcccEEEEEcccccccccccccccccccccccccccccccc
cidergggvfrsgelvprfgpceecrctdgtvvcsmmqceikpgcqtiqrpnqccpefkcecehngkvynngeklnstltpcqvcycrggalmcthftcftrddcqgrtlpgtccpnydhcpplahd
cidergggvfrsgelvprfgpceeCRCTDGTVVCSMMQCEIKPGCQTIQRPNQCCPEFKCECEHNGKVYNNGEKLNSTLTPCQVCYCRGGALMCTHFTCFTRDDCQGRTLPGtccpnydhcpplahd
CIDERGGGVFRSGELVPRFGPCEECRCTDGTVVCSMMQCEIKPGCQTIQRPNQCCPEFKCECEHNGKVYNNGEKLNSTLTPCQVCYCRGGALMCTHFTCFTRDDCQGRTLPGTCCPNYDHCPPLAHD
********VFRSGELVPRFGPCEECRCTDGTVVCSMMQCEIKPGCQTIQRPNQCCPEFKCECEHNGKVYNNGEKLNSTLTPCQVCYCRGGALMCTHFTCFTRDDCQGRTLPGTCCPNYDHC******
CIDERGGGVFRSGELVPRFGPCEECRCTDGTVVCSMMQCEIKPGCQTIQRPNQCCPEFKCECEHNGKVYNNGEKLNSTLTPCQVCYCRGGALMCTHFTCFTRDDCQGRTLPGTCCPNYDHCP*****
CIDERGGGVFRSGELVPRFGPCEECRCTDGTVVCSMMQCEIKPGCQTIQRPNQCCPEFKCECEHNGKVYNNGEKLNSTLTPCQVCYCRGGALMCTHFTCFTRDDCQGRTLPGTCCPNYDHCPPLAHD
C****GGGVFRSGELVPRFGPCEECRCTDGTVVCSMMQCEIKPGCQTIQRPNQCCPEFKCECEHNGKVYNNGEKLNSTLTPCQVCYCRGGALMCTHFTCFTRDDCQGRTLPGTCCPNYDHCPP****
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
CIDERGGGVFRSGELVPRFGPCEECRCTDGTVVCSMMQCEIKPGCQTIQRPNQCCPEFKCECEHNGKVYNNGEKLNSTLTPCQVCYCRGGALMCTHFTCFTRDDCQGRTLPGTCCPNYDHCPPLAHD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query127 2.2.26 [Sep-21-2011]
Q3U492 1550 Kielin/chordin-like prote yes N/A 0.897 0.073 0.336 3e-09
Q6ZWJ8 1503 Kielin/chordin-like prote no N/A 0.921 0.077 0.310 4e-08
Q9IBG7 2327 Kielin/chordin-like prote N/A N/A 0.866 0.047 0.330 6e-08
Q3U515 929 von Willebrand factor C a no N/A 0.771 0.105 0.33 1e-06
Q96DN2 955 von Willebrand factor C a no N/A 0.771 0.102 0.33 1e-06
Q80T14 4010 Extracellular matrix prot no N/A 0.708 0.022 0.306 7e-05
Q7T3Q2 1027 Cysteine-rich motor neuro no N/A 0.842 0.104 0.295 9e-05
>sp|Q3U492|KCP_MOUSE Kielin/chordin-like protein OS=Mus musculus GN=Kcp PE=1 SV=2 Back     alignment and function desciption
 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/116 (33%), Positives = 49/116 (42%), Gaps = 2/116 (1%)

Query: 7   GGVFRSG-ELVPRFGPCEECRCTDGTVVCSMMQCEIKPGCQTIQRPNQCCPEFKCECEHN 65
           G  F  G +  P   PC  C C DG  VC  + C   P     Q P  CCP     C ++
Sbjct: 432 GEEFAEGIQWEPDDQPCTSCSCQDGVPVCRAVLCSPVPCQHPTQPPGACCPSCD-SCTYH 490

Query: 66  GKVYNNGEKLNSTLTPCQVCYCRGGALMCTHFTCFTRDDCQGRTLPGTCCPNYDHC 121
             VY NG+      +PCQ CYC  G + C+   C      + +  PG CCP    C
Sbjct: 491 SLVYANGQNFTDVDSPCQTCYCEDGTVRCSLINCPFTTCAKPQNGPGQCCPKCPDC 546




Enhances bone morphogenetic protein (BMP) signaling in a paracrine manner. In contrast, it inhibits both the activin-A and TGFB1-mediated signaling pathways.
Mus musculus (taxid: 10090)
>sp|Q6ZWJ8|KCP_HUMAN Kielin/chordin-like protein OS=Homo sapiens GN=KCP PE=2 SV=2 Back     alignment and function description
>sp|Q9IBG7|KCP_XENLA Kielin/chordin-like protein OS=Xenopus laevis GN=kcp PE=2 SV=1 Back     alignment and function description
>sp|Q3U515|VWCE_MOUSE von Willebrand factor C and EGF domain-containing protein OS=Mus musculus GN=Vwce PE=2 SV=2 Back     alignment and function description
>sp|Q96DN2|VWCE_HUMAN von Willebrand factor C and EGF domain-containing protein OS=Homo sapiens GN=VWCE PE=2 SV=2 Back     alignment and function description
>sp|Q80T14|FRAS1_MOUSE Extracellular matrix protein FRAS1 OS=Mus musculus GN=Fras1 PE=2 SV=2 Back     alignment and function description
>sp|Q7T3Q2|CRIM1_DANRE Cysteine-rich motor neuron 1 protein OS=Danio rerio GN=crim1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query127
328721059 718 PREDICTED: hypothetical protein LOC10057 0.905 0.160 0.586 2e-37
357625332 976 hypothetical protein KGM_07586 [Danaus p 0.921 0.119 0.495 7e-35
91091408 462 PREDICTED: similar to CG31869 CG31869-PA 0.952 0.261 0.508 2e-30
403182451 829 AAEL001722-PA [Aedes aegypti] 0.755 0.115 0.515 9e-28
241018392153 conserved hypothetical protein [Ixodes s 0.937 0.777 0.462 3e-26
195578333 804 GD22225 [Drosophila simulans] gi|1941910 0.724 0.114 0.505 6e-26
195339951 695 GM11435 [Drosophila sechellia] gi|194130 0.724 0.132 0.505 2e-25
194862088 754 GG10356 [Drosophila erecta] gi|190661785 0.724 0.122 0.505 2e-25
24583533 777 CG31869, isoform A [Drosophila melanogas 0.724 0.118 0.494 2e-25
195471982 776 GE13317 [Drosophila yakuba] gi|194174382 0.724 0.118 0.494 3e-25
>gi|328721059|ref|XP_003247202.1| PREDICTED: hypothetical protein LOC100573877 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  160 bits (404), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 68/116 (58%), Positives = 83/116 (71%), Gaps = 1/116 (0%)

Query: 7   GGVFRSGELVPRFGPCEECRCTDGTVVCSMMQCEIKPGCQTIQRPNQCCPEFKCECEHNG 66
           G  +  GE  P  GPCEEC C    VVCSMM+C I  GC TIQ PN+CCP++KC+CEH G
Sbjct: 69  GSKYGEGEYTPGAGPCEECICHPPNVVCSMMKCPINTGCITIQLPNKCCPKYKCDCEHKG 128

Query: 67  KVYNNGEKLN-STLTPCQVCYCRGGALMCTHFTCFTRDDCQGRTLPGTCCPNYDHC 121
           K YNNGEK+N S  + C+VC+C GG ++CT   C+TR+DCQG  LPG CCP YD+C
Sbjct: 129 KQYNNGEKINKSDESECRVCFCNGGEIVCTSIVCYTRNDCQGYYLPGDCCPKYDNC 184




Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357625332|gb|EHJ75812.1| hypothetical protein KGM_07586 [Danaus plexippus] Back     alignment and taxonomy information
>gi|91091408|ref|XP_973923.1| PREDICTED: similar to CG31869 CG31869-PA [Tribolium castaneum] gi|270013052|gb|EFA09500.1| hypothetical protein TcasGA2_TC011601 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|403182451|gb|EAT47163.2| AAEL001722-PA [Aedes aegypti] Back     alignment and taxonomy information
>gi|241018392|ref|XP_002405768.1| conserved hypothetical protein [Ixodes scapularis] gi|215491798|gb|EEC01439.1| conserved hypothetical protein [Ixodes scapularis] Back     alignment and taxonomy information
>gi|195578333|ref|XP_002079020.1| GD22225 [Drosophila simulans] gi|194191029|gb|EDX04605.1| GD22225 [Drosophila simulans] Back     alignment and taxonomy information
>gi|195339951|ref|XP_002036580.1| GM11435 [Drosophila sechellia] gi|194130460|gb|EDW52503.1| GM11435 [Drosophila sechellia] Back     alignment and taxonomy information
>gi|194862088|ref|XP_001969918.1| GG10356 [Drosophila erecta] gi|190661785|gb|EDV58977.1| GG10356 [Drosophila erecta] Back     alignment and taxonomy information
>gi|24583533|ref|NP_723619.1| CG31869, isoform A [Drosophila melanogaster] gi|221474438|ref|NP_001137815.1| CG31869, isoform C [Drosophila melanogaster] gi|22946205|gb|AAF53012.2| CG31869, isoform A [Drosophila melanogaster] gi|220902010|gb|ACL83021.1| CG31869, isoform C [Drosophila melanogaster] Back     alignment and taxonomy information
>gi|195471982|ref|XP_002088281.1| GE13317 [Drosophila yakuba] gi|194174382|gb|EDW87993.1| GE13317 [Drosophila yakuba] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query127
RGD|1561119 1259 Kcp "kielin/chordin-like prote 0.881 0.088 0.372 2.2e-16
UNIPROTKB|G3MZ24 1978 KCP "Uncharacterized protein" 0.834 0.053 0.389 2.1e-15
MGI|MGI:2141640 1550 Kcp "kielin/chordin-like prote 0.866 0.070 0.375 3.3e-15
UNIPROTKB|I3L980 1994 KCP "Uncharacterized protein" 0.866 0.055 0.378 1.9e-14
UNIPROTKB|Q6ZWJ8 1503 KCP "Kielin/chordin-like prote 0.826 0.069 0.369 2.2e-14
MGI|MGI:1916371 426 Chrdl2 "chordin-like 2" [Mus m 0.448 0.133 0.380 1.5e-12
UNIPROTKB|F1SUP9 366 CHRDL2 "Uncharacterized protei 0.377 0.131 0.384 2.1e-12
ZFIN|ZDB-GENE-090313-315309 vwc2 "von Willebrand factor C 0.874 0.359 0.327 2.2e-12
UNIPROTKB|E2RAB0 430 CHRDL2 "Uncharacterized protei 0.409 0.120 0.375 2.7e-12
MGI|MGI:1919018 929 Vwce "von Willebrand factor C 0.921 0.125 0.330 3.4e-12
RGD|1561119 Kcp "kielin/chordin-like protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 217 (81.4 bits), Expect = 2.2e-16, P = 2.2e-16
 Identities = 44/118 (37%), Positives = 55/118 (46%)

Query:     7 GGVFRSG-ELVPRFGPCEECRCTDGTVVCSMMQCEIKPGCQ-TIQRPNQCCPEFKCE-CE 63
             G  F  G +  P   PC  C C DG  VC    C   P CQ   Q P  CCP   CE C 
Sbjct:   436 GEEFAEGIQWEPDDQPCTTCSCQDGVPVCRAALCSPVP-CQHPTQPPGACCPS--CESCT 492

Query:    64 HNGKVYNNGEKLNSTLTPCQVCYCRGGALMCTHFTCFTRDDCQGRTLPGTCCPNYDHC 121
             ++G VY+NG+      +PCQ CYC  G + C+   C +    + +  PG CCP    C
Sbjct:   493 YHGLVYSNGQNFTDVDSPCQTCYCEDGTVRCSVINCPSLTCAKPQNGPGQCCPKCPDC 550


GO:0005615 "extracellular space" evidence=ISO
GO:0030513 "positive regulation of BMP signaling pathway" evidence=ISO
UNIPROTKB|G3MZ24 KCP "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:2141640 Kcp "kielin/chordin-like protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|I3L980 KCP "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZWJ8 KCP "Kielin/chordin-like protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1916371 Chrdl2 "chordin-like 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SUP9 CHRDL2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-090313-315 vwc2 "von Willebrand factor C domain containing 2" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|E2RAB0 CHRDL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1919018 Vwce "von Willebrand factor C and EGF domains" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query127
1u5m_A73 Cartilage, alpha 1 type II collagen isoform 1; dis 9e-04
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2 Length = 73 Back     alignment and structure
 Score = 34.9 bits (80), Expect = 9e-04
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 62  CEHNGKVYNNGEKLNSTLTPCQVCYCRGGALMCTHFTCFTRDDCQG-RTLPGTCCP 116
           C  +G+ YN+ +       PC++C C  G ++C    C    DC       G CCP
Sbjct: 10  CVQDGQRYNDKDVWKPE--PCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCP 63


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query127
1u5m_A73 Cartilage, alpha 1 type II collagen isoform 1; dis 99.53
1u5m_A73 Cartilage, alpha 1 type II collagen isoform 1; dis 99.51
3bk3_C67 Crossveinless 2, bone morphogenetic protein 2; TGF 99.18
3bk3_C67 Crossveinless 2, bone morphogenetic protein 2; TGF 99.1
2cg7_A90 Fibronectin; signaling protein, 2F13F1, acute phas 98.02
2rl0_A89 Fibronectin; 4F15F1, beta zipper, staphylococcus a 97.79
2xtt_A36 Protease inhibitor SGPI-1; hydrolase, catalytic me 97.77
3ejh_A93 Fibronectin; fibronectin, protein complex, collage 97.64
1wo9_A35 HI-1, trypsin inhibitor; hydrolase inhibitor; NMR 97.32
1gl0_I35 Protease inhibitor LCMI I; hydrolase/inhibitor, co 97.22
1o9a_A93 Fibronectin; cell adhesion/complex, HOST-pathogen 97.16
2xtt_A36 Protease inhibitor SGPI-1; hydrolase, catalytic me 97.14
1xhh_A91 Beta-microseminoprotein; beta srands, novel fold, 96.76
3ix0_A94 Beta-microseminoprotein; beta sheet, greek KEY mot 96.39
1wo9_A35 HI-1, trypsin inhibitor; hydrolase inhibitor; NMR 96.09
1gl0_I35 Protease inhibitor LCMI I; hydrolase/inhibitor, co 95.98
3tvj_I38 Protease inhibitor SGPI-2; in vitro evolution, spe 95.14
1o9a_A93 Fibronectin; cell adhesion/complex, HOST-pathogen 93.77
3ejh_A93 Fibronectin; fibronectin, protein complex, collage 93.57
3tvj_I38 Protease inhibitor SGPI-2; in vitro evolution, spe 93.27
1xhh_A91 Beta-microseminoprotein; beta srands, novel fold, 92.91
3m7p_A308 FN1 protein; fibronectin, extracellular matrix, mo 92.68
3ix0_A94 Beta-microseminoprotein; beta sheet, greek KEY mot 91.56
2cg7_A90 Fibronectin; signaling protein, 2F13F1, acute phas 91.26
2rl0_A89 Fibronectin; 4F15F1, beta zipper, staphylococcus a 86.24
2ec3_A68 Fibronectin; complement module, two disulfide bond 82.32
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2 Back     alignment and structure
Probab=99.53  E-value=2.4e-14  Score=86.69  Aligned_cols=59  Identities=27%  Similarity=0.727  Sum_probs=53.8

Q ss_pred             cceeCCEEecCCCeEeCCCCCCeeeEEcCCcEEEEeccCCCC-CCCCCccCCCCcCCCCCCC
Q psy13556         61 ECEHNGKVYNNGEKLNSTLTPCQVCYCRGGALMCTHFTCFTR-DDCQGRTLPGTCCPNYDHC  121 (127)
Q Consensus        61 ~C~~~g~~y~~g~~~~~~~~~C~~C~C~~g~~~C~~~~C~~~-~~~~~~~~~g~CCp~C~~c  121 (127)
                      .|.++|++|++|++|++  ++|++|+|.+|.+.|..+.|+++ .|.++...+|+|||+|++=
T Consensus         9 ~C~~~G~~y~~ge~W~~--d~C~~C~C~~G~v~C~~~~Cp~~~~C~~p~~~~GeCCPvC~~~   68 (73)
T 1u5m_A            9 SCVQDGQRYNDKDVWKP--EPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICPAD   68 (73)
T ss_dssp             CEESSSCEECSSCEECS--CSSEEEEEETTEEEEEECCCSCCSSCSCCCCCSSCSCCSCCSS
T ss_pred             CeeECCEEEcCCCEECC--cCcCceECCCCcEEeccccCCCccCCCCCcccCCCcCCCCCCc
Confidence            69999999999999996  88999999999999999999998 6666888999999999753



>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2 Back     alignment and structure
>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio} Back     alignment and structure
>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio} Back     alignment and structure
>2cg7_A Fibronectin; signaling protein, 2F13F1, acute phase, alternative splicing, cell adhesion, glycoprotein, heparin-binding, phosphorylation; 1.2A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 2cg6_A 2cku_A 2rkz_A 3cal_A 3zrz_A Back     alignment and structure
>2rl0_A Fibronectin; 4F15F1, beta zipper, staphylococcus aureus, acute phase, alternative splicing, cell adhesion, extracellular matrix; 2.00A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1fbr_A 2rky_A Back     alignment and structure
>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A Back     alignment and structure
>3ejh_A Fibronectin; fibronectin, protein complex, collagenase site, AC phase, cell adhesion, disease mutation; HET: NAG; 2.10A {Homo sapiens} PDB: 3gxe_B* Back     alignment and structure
>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1 Back     alignment and structure
>1gl0_I Protease inhibitor LCMI I; hydrolase/inhibitor, complex (protease/inhibitor), hydrolase, serine protease, serine protease inhibitor; 3.0A {Locusta migratoria} SCOP: g.4.1.1 Back     alignment and structure
>1o9a_A Fibronectin; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1qgb_A Back     alignment and structure
>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A Back     alignment and structure
>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic secretory protein, solution structure, Na+, K+ ATPase inhibitor, unknown function; NMR {Sus scrofa} PDB: 2iz4_A Back     alignment and structure
>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative splicing, disulfide bond, polymorphism, secreted, protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A Back     alignment and structure
>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1 Back     alignment and structure
>1gl0_I Protease inhibitor LCMI I; hydrolase/inhibitor, complex (protease/inhibitor), hydrolase, serine protease, serine protease inhibitor; 3.0A {Locusta migratoria} SCOP: g.4.1.1 Back     alignment and structure
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A Back     alignment and structure
>1o9a_A Fibronectin; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1qgb_A Back     alignment and structure
>3ejh_A Fibronectin; fibronectin, protein complex, collagenase site, AC phase, cell adhesion, disease mutation; HET: NAG; 2.10A {Homo sapiens} PDB: 3gxe_B* Back     alignment and structure
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A Back     alignment and structure
>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic secretory protein, solution structure, Na+, K+ ATPase inhibitor, unknown function; NMR {Sus scrofa} PDB: 2iz4_A Back     alignment and structure
>3m7p_A FN1 protein; fibronectin, extracellular matrix, modular protein, zinc BIN dimer, conformational change, cell adhesion; HET: NAG 12P; 2.50A {Homo sapiens} PDB: 3mql_A* 1e88_A* 1e8b_A* 1qo6_A 2fn2_A* Back     alignment and structure
>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative splicing, disulfide bond, polymorphism, secreted, protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A Back     alignment and structure
>2cg7_A Fibronectin; signaling protein, 2F13F1, acute phase, alternative splicing, cell adhesion, glycoprotein, heparin-binding, phosphorylation; 1.2A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 2cg6_A 2cku_A 2rkz_A 3cal_A 3zrz_A Back     alignment and structure
>2rl0_A Fibronectin; 4F15F1, beta zipper, staphylococcus aureus, acute phase, alternative splicing, cell adhesion, extracellular matrix; 2.00A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1fbr_A 2rky_A Back     alignment and structure
>2ec3_A Fibronectin; complement module, two disulfide bonds, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 127
d1u5ma_73 g.27.1.2 (A:) Collagen alpha 1(II) chain precursor 6e-04
d1u5ma_73 g.27.1.2 (A:) Collagen alpha 1(II) chain precursor 0.004
>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: VWC domain
domain: Collagen alpha 1(II) chain precursor
species: Human (Homo sapiens) [TaxId: 9606]
 Score = 34.2 bits (78), Expect = 6e-04
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 62  CEHNGKVYNNGEKLNSTLTPCQVCYCRGGALMCTHFTCFTRDDCQG-RTLPGTCCP 116
           C  +G+ YN+ +       PC++C C  G ++C    C    DC       G CCP
Sbjct: 10  CVQDGQRYNDKDVWKPE--PCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCP 63


>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query127
d1u5ma_73 Collagen alpha 1(II) chain precursor {Human (Homo 99.57
d1u5ma_73 Collagen alpha 1(II) chain precursor {Human (Homo 99.52
d1o9aa144 Fibronectin {Human (Homo sapiens) [TaxId: 9606]} 96.08
d1gl0i_32 Protease inhibitor PMP-D2V {Migratory locust (Locu 95.86
d2cg7a247 Fibronectin {Human (Homo sapiens) [TaxId: 9606]} 95.8
d2cg7a143 Fibronectin {Human (Homo sapiens) [TaxId: 9606]} 95.5
d2rkya146 Fibronectin {Human (Homo sapiens) [TaxId: 9606]} 95.22
d2rkya244 Fibronectin {Human (Homo sapiens) [TaxId: 9606]} 94.9
d1tpna_50 Tissue-type plasminogen activator, t-PA {Human (Ho 93.89
d1wo9a_35 Protease inhibitor SGTI {Desert locust (Schistocer 93.48
d2cg7a143 Fibronectin {Human (Homo sapiens) [TaxId: 9606]} 93.28
d1e88a341 Fibronectin {Human (Homo sapiens) [TaxId: 9606]} 93.01
d1e88a341 Fibronectin {Human (Homo sapiens) [TaxId: 9606]} 92.76
d1gl1i_34 Protease inhibitor PMP-C {Migratory locust (Locust 92.2
d1tpna_50 Tissue-type plasminogen activator, t-PA {Human (Ho 88.5
>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: VWC domain
domain: Collagen alpha 1(II) chain precursor
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57  E-value=3e-15  Score=89.20  Aligned_cols=59  Identities=29%  Similarity=0.828  Sum_probs=52.9

Q ss_pred             ccceeCCEEecCCCeEeCCCCCCeeeEEcCCcEEEEeccCCCCCCC-CCccCCCCcCCCCCC
Q psy13556         60 CECEHNGKVYNNGEKLNSTLTPCQVCYCRGGALMCTHFTCFTRDDC-QGRTLPGTCCPNYDH  120 (127)
Q Consensus        60 ~~C~~~g~~y~~g~~~~~~~~~C~~C~C~~g~~~C~~~~C~~~~~~-~~~~~~g~CCp~C~~  120 (127)
                      .+|.|+|++|.+|++|++  ++|++|+|.+|.+.|.++.|+++.++ +++..+|+|||+|++
T Consensus         8 ~~C~~~g~~y~~Ge~w~~--d~C~~C~C~~G~v~C~~~~Cp~~~~c~~~~~~~g~CCp~C~~   67 (73)
T d1u5ma_           8 GSCVQDGQRYNDKDVWKP--EPCRICVCDTGTVLCDDIICEDVKDCLSPEIPFGECCPICPA   67 (73)
T ss_dssp             SCEESSSCEECSSCEECS--CSSEEEEEETTEEEEEECCCSCCSSCSCCCCCSSCSCCSCCS
T ss_pred             CCCeECCEEecCCCEECC--CCCeEeEecCCeEEEeeccCCCCCCCCCceecCCCcCCcCCC
Confidence            379999999999999996  89999999999999999999987544 578889999999964



>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o9aa1 g.27.1.1 (A:17-60) Fibronectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gl0i_ g.4.1.1 (I:) Protease inhibitor PMP-D2V {Migratory locust (Locusta migratoria) [TaxId: 7004]} Back     information, alignment and structure
>d2cg7a2 g.27.1.1 (A:62-108) Fibronectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cg7a1 g.27.1.1 (A:109-151) Fibronectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2rkya1 g.27.1.1 (A:152-197) Fibronectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2rkya2 g.27.1.1 (A:198-241) Fibronectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tpna_ g.27.1.1 (A:) Tissue-type plasminogen activator, t-PA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wo9a_ g.4.1.1 (A:) Protease inhibitor SGTI {Desert locust (Schistocerca gregaria) [TaxId: 7010]} Back     information, alignment and structure
>d2cg7a1 g.27.1.1 (A:109-151) Fibronectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e88a3 g.27.1.1 (A:1-41) Fibronectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e88a3 g.27.1.1 (A:1-41) Fibronectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gl1i_ g.4.1.1 (I:) Protease inhibitor PMP-C {Migratory locust (Locusta migratoria) [TaxId: 7004]} Back     information, alignment and structure
>d1tpna_ g.27.1.1 (A:) Tissue-type plasminogen activator, t-PA {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure