Psyllid ID: psy1355

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70------
Protein Sequence
MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccEEEEEEEEEccccccHHEEEEEHcccccccccccccEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccEEEEEEEEEEccccccHHHHHHHHHHccccccccccccHHccccccccccc
Coil and Loop (DISEMBL)
mansnnsnsngrggriqrpndqtQAKICQYKLVLLGESAVGKSSLVLRFVRgqfheyqestiggcgnvpgrdrqgw
Flexible Loop (DISEMBL)
mansnnsnsngrggriqrpndqTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHeyqestiggcgnvpgrdrqgw
Low Complexity Region (SEG)
MAnsnnsnsngrggrIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW
Disordered region (IsUnstruct)
************************AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG**********
Disordered Region (DISOPRED)
******************************KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRD****
Disordered Region (DISEMBL)
****************QRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW
Disordered Region (DISPRO)
***********************QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV********
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	76	2.2.26 [Sep-21-2011]
Q5ZHW4	215	Ras-related protein Rab-5	yes	N/A	0.618	0.218	0.875	2e-17
Q5RBG1	215	Ras-related protein Rab-5	yes	N/A	0.631	0.223	0.857	5e-17
P61021	215	Ras-related protein Rab-5	yes	N/A	0.631	0.223	0.857	5e-17
P61020	215	Ras-related protein Rab-5	yes	N/A	0.631	0.223	0.857	5e-17
P51147	216	Ras-related protein Rab-5	no	N/A	0.710	0.25	0.767	5e-16
P35278	216	Ras-related protein Rab-5	no	N/A	0.710	0.25	0.767	5e-16
Q58DS9	216	Ras-related protein Rab-5	no	N/A	0.710	0.25	0.767	6e-16
Q5R7L7	216	Ras-related protein Rab-5	no	N/A	0.710	0.25	0.767	6e-16
P51148	216	Ras-related protein Rab-5	no	N/A	0.710	0.25	0.767	6e-16
Q98932	216	Ras-related protein Rab-5	no	N/A	0.710	0.25	0.767	6e-16

>sp|Q5ZHW4|RAB5B_CHICK Ras-related protein Rab-5B OS=Gallus gallus GN=RAB5B PE=2 SV=1

 Score = 87.4 bits (215), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 42/48 (87%), Positives = 45/48 (93%), Gaps = 1/48 (2%)

Query: 18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
          RPN Q+QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG 
Sbjct: 8  RPNGQSQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 55

Protein transport. Probably involved in vesicular traffic.
Gallus gallus (taxid: 9031)

>sp|Q5RBG1|RAB5B_PONAB Ras-related protein Rab-5B OS=Pongo abelii GN=RAB5B PE=2 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/49 (85%), Positives = 44/49 (89%), Gaps = 1/49 (2%)

Query: 18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 8  RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 56

Protein transport. Probably involved in vesicular traffic.

Pongo abelii (taxid: 9601)

>sp|P61021|RAB5B_MOUSE Ras-related protein Rab-5B OS=Mus musculus GN=Rab5b PE=1 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/49 (85%), Positives = 44/49 (89%), Gaps = 1/49 (2%)

Query: 18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 8  RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 56

Protein transport. Probably involved in vesicular traffic.

Mus musculus (taxid: 10090)

>sp|P61020|RAB5B_HUMAN Ras-related protein Rab-5B OS=Homo sapiens GN=RAB5B PE=1 SV=1

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/49 (85%), Positives = 44/49 (89%), Gaps = 1/49 (2%)

Query: 18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 8  RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 56

Protein transport. Probably involved in vesicular traffic.

Homo sapiens (taxid: 9606)

>sp|P51147|RAB5C_CANFA Ras-related protein Rab-5C OS=Canis familiaris GN=RAB5C PE=2 SV=1

 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 45/56 (80%), Gaps = 2/56 (3%)

Query: 11 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          GRGG   RPN      KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 3  GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 57

Protein transport. Probably involved in vesicular traffic.

Canis familiaris (taxid: 9615)

>sp|P35278|RAB5C_MOUSE Ras-related protein Rab-5C OS=Mus musculus GN=Rab5c PE=1 SV=2

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 45/56 (80%), Gaps = 2/56 (3%)

Query: 11 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          GRGG   RPN      KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 3  GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 57

Protein transport. Probably involved in vesicular traffic.

Mus musculus (taxid: 10090)

>sp|Q58DS9|RAB5C_BOVIN Ras-related protein Rab-5C OS=Bos taurus GN=RAB5C PE=2 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 45/56 (80%), Gaps = 2/56 (3%)

Query: 11 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          GRGG   RPN      KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 3  GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 57

Protein transport. Probably involved in vesicular traffic.

Bos taurus (taxid: 9913)

>sp|Q5R7L7|RAB5C_PONAB Ras-related protein Rab-5C OS=Pongo abelii GN=RAB5C PE=2 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 45/56 (80%), Gaps = 2/56 (3%)

Query: 11 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          GRGG   RPN      KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 3  GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 57

Protein transport. Probably involved in vesicular traffic.

Pongo abelii (taxid: 9601)

>sp|P51148|RAB5C_HUMAN Ras-related protein Rab-5C OS=Homo sapiens GN=RAB5C PE=1 SV=2

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 45/56 (80%), Gaps = 2/56 (3%)

Query: 11 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          GRGG   RPN      KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 3  GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 57

Protein transport. Probably involved in vesicular traffic.

Homo sapiens (taxid: 9606)

>sp|Q98932|RAB5C_CHICK Ras-related protein Rab-5C OS=Gallus gallus GN=RAB5C PE=1 SV=1

 Score = 82.8 bits (203), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 43/56 (76%), Positives = 45/56 (80%), Gaps = 2/56 (3%)

Query: 11 GRGGRIQRPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          GRGG   RPN      KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 3  GRGG-AARPNGPAAGNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 57

Protein transport. Probably involved in vesicular traffic.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
325303414	179	TPA_exp: Rab5-related subfamily protein	0.723	0.307	0.8	1e-17
189237939	215	PREDICTED: similar to small GTP binding	0.710	0.251	0.814	1e-17
157117083	214	rab5 [Aedes aegypti] gi|108876182|gb|EAT	0.776	0.275	0.779	1e-17
427786891	218	hypothetical protein [Rhipicephalus pulc	0.723	0.252	0.8	2e-17
158297331	228	AGAP007901-PA [Anopheles gambiae str. PE	0.684	0.228	0.846	2e-17
119393795	213	Rab5 [Anopheles gambiae]	0.697	0.248	0.830	2e-17
325303412	113	TPA_exp: Rab5-related subfamily protein	0.723	0.486	0.8	3e-17
328790844	221	PREDICTED: ras-related protein Rab-5B-li	0.684	0.235	0.826	4e-17
307203579	214	Ras-related protein Rab-5C [Harpegnathos	0.684	0.242	0.826	4e-17
332017090	214	Ras-related protein Rab-5C [Acromyrmex e	0.684	0.242	0.826	4e-17

>gi|325303414|tpg|DAA34126.1| TPA_exp: Rab5-related subfamily protein 481 [Amblyomma variegatum]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/55 (80%), Positives = 46/55 (83%)

Query: 11 GRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          GRG   QRPN   Q KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 3  GRGAAAQRPNGAPQGKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 57

Source: Amblyomma variegatum

Species: Amblyomma variegatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237939|ref|XP_001813105.1| PREDICTED: similar to small GTP binding protein RAB5 [Tribolium castaneum] gi|270008253|gb|EFA04701.1| Rab-protein 5 [Tribolium castaneum]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 44/54 (81%), Positives = 46/54 (85%)

Query: 12 RGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          R G  QRPN  TQ KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 4  RTGTAQRPNGSTQGKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 57

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157117083|ref|XP_001658691.1| rab5 [Aedes aegypti] gi|108876182|gb|EAT40407.1| AAEL007845-PA [Aedes aegypti]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 49/59 (83%)

Query: 7  SNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          +NS   GG  QRPN  TQ KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 2  ANSPRAGGGAQRPNGATQNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 60

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427786891|gb|JAA58897.1| hypothetical protein [Rhipicephalus pulchellus]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/55 (80%), Positives = 46/55 (83%)

Query: 11 GRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          GRG   QRPN   Q KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 3  GRGAAAQRPNGAPQGKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 57

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158297331|ref|XP_317585.4| AGAP007901-PA [Anopheles gambiae str. PEST] gi|157015144|gb|EAA43939.4| AGAP007901-PA [Anopheles gambiae str. PEST]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/52 (84%), Positives = 46/52 (88%)

Query: 13 GGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
          GG  QRPN  TQ KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG 
Sbjct: 13 GGAAQRPNGATQNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGA 64

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|119393795|gb|ABL74413.1| Rab5 [Anopheles gambiae]

 Score = 92.8 bits (229), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/53 (83%), Positives = 46/53 (86%)

Query: 13 GGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          GG  QRPN  TQ KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 8  GGAAQRPNGATQNKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 60

Source: Anopheles gambiae

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|325303412|tpg|DAA34125.1| TPA_exp: Rab5-related subfamily protein 480 [Amblyomma variegatum]

 Score = 92.8 bits (229), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/55 (80%), Positives = 46/55 (83%)

Query: 11 GRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          GRG   QRPN   Q KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 3  GRGAAAQRPNGAPQGKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 57

Source: Amblyomma variegatum

Species: Amblyomma variegatum

Genus: Amblyomma

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790844|ref|XP_003251474.1| PREDICTED: ras-related protein Rab-5B-like [Apis mellifera]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/52 (82%), Positives = 45/52 (86%)

Query: 14 GRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          G  QRPN  TQ KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 5  GTAQRPNGSTQGKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 56

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307203579|gb|EFN82612.1| Ras-related protein Rab-5C [Harpegnathos saltator]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/52 (82%), Positives = 45/52 (86%)

Query: 14 GRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          G  QRPN  TQ KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 5  GTAQRPNGSTQGKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 56

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017090|gb|EGI57889.1| Ras-related protein Rab-5C [Acromyrmex echinatior]

 Score = 92.0 bits (227), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 43/52 (82%), Positives = 45/52 (86%)

Query: 14 GRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          G  QRPN  TQ KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 5  GTAQRPNGSTQGKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 56

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	76
UNIPROTKB|F8VPW9	73	RAB5B "Ras-related protein Rab	0.710	0.739	0.803	2e-17
UNIPROTKB|Q5ZHW4	215	RAB5B "Ras-related protein Rab	0.605	0.213	0.893	8.6e-17
UNIPROTKB|F1MNI4	229	RAB5B "Uncharacterized protein	0.605	0.200	0.893	1.4e-16
UNIPROTKB|E2QW69	215	RAB5B "Uncharacterized protein	0.605	0.213	0.893	1.4e-16
UNIPROTKB|F8VUA5	115	RAB5B "Ras-related protein Rab	0.605	0.4	0.893	1.4e-16
UNIPROTKB|F8VVZ0	100	RAB5B "Ras-related protein Rab	0.605	0.46	0.893	1.4e-16
UNIPROTKB|P61020	215	RAB5B "Ras-related protein Rab	0.605	0.213	0.893	1.4e-16
UNIPROTKB|I3LFZ8	229	RAB5B "Uncharacterized protein	0.605	0.200	0.893	1.4e-16
UNIPROTKB|Q5RBG1	215	RAB5B "Ras-related protein Rab	0.605	0.213	0.893	1.4e-16
MGI|MGI:105938	215	Rab5b "RAB5B, member RAS oncog	0.605	0.213	0.893	1.4e-16

UNIPROTKB|F8VPW9 RAB5B "Ras-related protein Rab-5B" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 45/56 (80%), Positives = 48/56 (85%)

Query:    18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRD 72
             RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIGG    P +D
Sbjct:     8 RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGG-NLCPSKD 62

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q5ZHW4 RAB5B "Ras-related protein Rab-5B" [Gallus gallus (taxid:9031)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 42/47 (89%), Positives = 45/47 (95%)

Query:    18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
             RPN Q+QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct:     8 RPNGQSQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIG 54

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0019003 "GDP binding" evidence=ISS

UNIPROTKB|F1MNI4 RAB5B "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 42/47 (89%), Positives = 44/47 (93%)

Query:    18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
             RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct:    20 RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIG 66

GO:0030742 "GTP-dependent protein binding" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|E2QW69 RAB5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 42/47 (89%), Positives = 44/47 (93%)

Query:    18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
             RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct:     8 RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIG 54

GO:0030742 "GTP-dependent protein binding" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|F8VUA5 RAB5B "Ras-related protein Rab-5B" [Homo sapiens (taxid:9606)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 42/47 (89%), Positives = 44/47 (93%)

Query:    18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
             RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct:     8 RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIG 54

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

UNIPROTKB|F8VVZ0 RAB5B "Ras-related protein Rab-5B" [Homo sapiens (taxid:9606)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 42/47 (89%), Positives = 44/47 (93%)

Query:    18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
             RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct:     8 RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIG 54

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

UNIPROTKB|P61020 RAB5B "Ras-related protein Rab-5B" [Homo sapiens (taxid:9606)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 42/47 (89%), Positives = 44/47 (93%)

Query:    18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
             RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct:     8 RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIG 54

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0030742 "GTP-dependent protein binding" evidence=IDA

GO:0005768 "endosome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0019003 "GDP binding" evidence=IDA

GO:0003924 "GTPase activity" evidence=TAS

GO:0016020 "membrane" evidence=TAS

GO:0005622 "intracellular" evidence=IDA

GO:0006184 "GTP catabolic process" evidence=TAS

UNIPROTKB|I3LFZ8 RAB5B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 42/47 (89%), Positives = 44/47 (93%)

Query:    18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
             RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct:    20 RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIG 66

GO:0030742 "GTP-dependent protein binding" evidence=IEA

GO:0030139 "endocytic vesicle" evidence=IEA

GO:0030100 "regulation of endocytosis" evidence=IEA

GO:0007032 "endosome organization" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

UNIPROTKB|Q5RBG1 RAB5B "Ras-related protein Rab-5B" [Pongo abelii (taxid:9601)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 42/47 (89%), Positives = 44/47 (93%)

Query:    18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
             RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct:     8 RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIG 54

GO:0019003 "GDP binding" evidence=ISS

MGI|MGI:105938 Rab5b "RAB5B, member RAS oncogene family" [Mus musculus (taxid:10090)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 42/47 (89%), Positives = 44/47 (93%)

Query:    18 RPNDQTQA-KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
             RPN Q QA KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG
Sbjct:     8 RPNGQPQASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIG 54

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=TAS

GO:0005525 "GTP binding" evidence=IEA

GO:0005768 "endosome" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0006184 "GTP catabolic process" evidence=TAS

GO:0006810 "transport" evidence=IEA

GO:0007032 "endosome organization" evidence=IDA

GO:0007264 "small GTPase mediated signal transduction" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0019003 "GDP binding" evidence=ISO

GO:0030100 "regulation of endocytosis" evidence=IDA

GO:0030139 "endocytic vesicle" evidence=IDA

GO:0030742 "GTP-dependent protein binding" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P36586	YPT5_SCHPO	No assigned EC number	0.7714	0.4605	0.1658	yes	N/A
Q9SN68	RAF2B_ARATH	No assigned EC number	0.7142	0.4605	0.175	yes	N/A
P61021	RAB5B_MOUSE	No assigned EC number	0.8571	0.6315	0.2232	yes	N/A
P61020	RAB5B_HUMAN	No assigned EC number	0.8571	0.6315	0.2232	yes	N/A
Q5RBG1	RAB5B_PONAB	No assigned EC number	0.8571	0.6315	0.2232	yes	N/A
Q86JP3	RAB5A_DICDI	No assigned EC number	0.8	0.5263	0.1990	yes	N/A
Q5ZHW4	RAB5B_CHICK	No assigned EC number	0.875	0.6184	0.2186	yes	N/A
P36017	VPS21_YEAST	No assigned EC number	0.6153	0.5131	0.1857	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	76
cd01860	163	cd01860, Rab5_related, Rab-related GTPase family i	8e-22
pfam00071	162	pfam00071, Ras, Ras family	4e-14
cd00154	159	cd00154, Rab, Ras-related in brain (Rab) family of	3e-13
smart00175	164	smart00175, RAB, Rab subfamily of small GTPases	9e-13
cd04123	162	cd04123, Rab21, Rab GTPase family 21 (Rab21)	2e-11
cd01868	165	cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-	3e-11
cd01863	161	cd01863, Rab18, Rab GTPase family 18 (Rab18)	2e-10
smart00173	164	smart00173, RAS, Ras subfamily of RAS small GTPase	2e-09
smart00010	166	smart00010, small_GTPase, Small GTPase of the Ras	3e-09
cd00876	160	cd00876, Ras, Rat sarcoma (Ras) family of small gu	4e-09
COG1100	219	COG1100, COG1100, GTPase SAR1 and related small G	1e-08
cd01861	161	cd01861, Rab6, Rab GTPase family 6 (Rab6)	9e-08
cd01869	166	cd01869, Rab1_Ypt1, Rab GTPase family 1 includes t	2e-07
cd04111	211	cd04111, Rab39, Rab GTPase family 39 (Rab39)	3e-07
cd01867	167	cd01867, Rab8_Rab10_Rab13_like, Rab GTPase familie	6e-07
cd04137	180	cd04137, RheB, Ras Homolog Enriched in Brain (RheB	1e-06
cd04141	172	cd04141, Rit_Rin_Ric, Ras-like protein in all tiss	1e-06
cd04124	161	cd04124, RabL2, Rab GTPase-like family 2 (Rab-like	2e-06
cd01864	165	cd01864, Rab19, Rab GTPase family 19 (Rab19)	2e-06
cd04140	165	cd04140, ARHI_like, A Ras homolog member I (ARHI)	3e-06
cd04175	164	cd04175, Rap1, Rap1 family GTPase consists of Rap1	3e-06
cd04143	247	cd04143, Rhes_like, Ras homolog enriched in striat	3e-06
cd01862	172	cd01862, Rab7, Rab GTPase family 7 (Rab7)	3e-06
cd04107	201	cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab1	5e-06
cd04106	162	cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-	9e-06
cd04115	170	cd04115, Rab33B_Rab33A, Rab GTPase family 33 inclu	1e-05
PLN03110	216	PLN03110, PLN03110, Rab GTPase; Provisional	2e-05
cd04136	164	cd04136, Rap_like, Rap-like family consists of Rap	2e-05
cd04176	163	cd04176, Rap2, Rap2 family GTPase consists of Rap2	2e-05
PTZ00132	215	PTZ00132, PTZ00132, GTP-binding nuclear protein Ra	3e-05
cd04117	164	cd04117, Rab15, Rab GTPase family 15 (Rab15)	3e-05
cd04118	193	cd04118, Rab24, Rab GTPase family 24 (Rab24)	3e-05
cd04114	169	cd04114, Rab30, Rab GTPase family 30 (Rab30)	4e-05
cd04145	164	cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3	6e-05
cd04177	168	cd04177, RSR1, RSR1/Bud1p family GTPase	7e-05
cd04110	199	cd04110, Rab35, Rab GTPase family 35 (Rab35)	8e-05
cd00157	171	cd00157, Rho, Ras homology family (Rho) of small g	2e-04
cd04116	170	cd04116, Rab9, Rab GTPase family 9 (Rab9)	3e-04
cd04126	220	cd04126, Rab20, Rab GTPase family 20 (Rab20)	4e-04
cd04134	185	cd04134, Rho3, Ras homology family 3 (Rho3) of sma	4e-04
cd01866	168	cd01866, Rab2, Rab GTPase family 2 (Rab2)	4e-04
pfam08477	116	pfam08477, Miro, Miro-like protein	5e-04
cd04128	182	cd04128, Spg1, Septum-promoting GTPase (Spg1)	7e-04
cd04109	213	cd04109, Rab28, Rab GTPase family 28 (Rab28)	8e-04
cd04139	163	cd04139, RalA_RalB, Ral (Ras-like) family containi	9e-04
cd04138	162	cd04138, H_N_K_Ras_like, Ras GTPase family contain	0.001
PLN03071	219	PLN03071, PLN03071, GTP-binding nuclear protein Ra	0.001
PTZ00369	189	PTZ00369, PTZ00369, Ras-like protein; Provisional	0.002
cd04112	191	cd04112, Rab26, Rab GTPase family 26 (Rab26)	0.002
cd04148	219	cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfam	0.004

>gnl|CDD|206653 cd01860, Rab5_related, Rab-related GTPase family includes Rab5 and Rab22; regulates early endosome fusion

 Score = 82.2 bits (204), Expect = 8e-22
 Identities = 26/35 (74%), Positives = 32/35 (91%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          Q+KLVLLG+S+VGKSS+VLRFV+ +F E QESTIG
Sbjct: 1  QFKLVLLGDSSVGKSSIVLRFVKNEFSENQESTIG 35

The Rab5-related subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|215692 pfam00071, Ras, Ras family

 Score = 62.5 bits (153), Expect = 4e-14
 Identities = 18/33 (54%), Positives = 24/33 (72%)

Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          KLVL+G+  VGKSSL++RF + +F E    TIG
Sbjct: 1  KLVLVGDGGVGKSSLLIRFTQNKFPEEYIPTIG 33

Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices. Length = 162

>gnl|CDD|206640 cd00154, Rab, Ras-related in brain (Rab) family of small guanosine triphosphatases (GTPases)

 Score = 60.2 bits (147), Expect = 3e-13
 Identities = 20/34 (58%), Positives = 28/34 (82%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K+VL+G+S VGK+SL+LRFV  +F E  +STIG
Sbjct: 1  FKIVLIGDSGVGKTSLLLRFVDNKFSENYKSTIG 34

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which mask C-terminal lipid binding and promote cytosolic localization. While most unicellular organisms possess 5-20 Rab members, several have been found to possess 60 or more Rabs; for many of these Rab isoforms, homologous proteins are not found in other organisms. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Since crystal structures often lack C-terminal residues, the lipid modification site is not available for annotation in many of the CDs in the hierarchy, but is included where possible. Length = 159

>gnl|CDD|197555 smart00175, RAB, Rab subfamily of small GTPases

 Score = 59.1 bits (144), Expect = 9e-13
 Identities = 19/34 (55%), Positives = 27/34 (79%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K++L+G+S VGKSSL+ RF  G+F E  +STIG
Sbjct: 1  FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIG 34

Rab GTPases are implicated in vesicle trafficking. Length = 164

>gnl|CDD|133323 cd04123, Rab21, Rab GTPase family 21 (Rab21)

 Score = 55.3 bits (134), Expect = 2e-11
 Identities = 20/33 (60%), Positives = 26/33 (78%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          +K+VLLGE  VGK+SLVLR+V  +F+E  EST 
Sbjct: 1  FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTT 33

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes Rab11a, Rab11b, and Rab25

 Score = 54.9 bits (133), Expect = 3e-11
 Identities = 18/34 (52%), Positives = 27/34 (79%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K+VL+G+S VGKS+L+ RF R +F+   +STIG
Sbjct: 4  FKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIG 37

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18)

 Score = 53.1 bits (128), Expect = 2e-10
 Identities = 19/34 (55%), Positives = 24/34 (70%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           K++L+G+S VGKSSL+LRF    F E   STIG
Sbjct: 1  LKILLIGDSGVGKSSLLLRFTDDTFDEDLSSTIG 34

Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|214541 smart00173, RAS, Ras subfamily of RAS small GTPases

 Score = 50.2 bits (121), Expect = 2e-09
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          YKLV+LG   VGKS+L ++F++G F +  + TI
Sbjct: 1  YKLVVLGSGGVGKSALTIQFIQGHFVDDYDPTI 33

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades. Length = 164

>gnl|CDD|197466 smart00010, small_GTPase, Small GTPase of the Ras superfamily; ill-defined subfamily

 Score = 49.9 bits (120), Expect = 3e-09
 Identities = 17/33 (51%), Positives = 24/33 (72%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          YKLV+LG   VGKS+L ++FV+G F +  + TI
Sbjct: 3  YKLVVLGGGGVGKSALTIQFVQGHFVDEYDPTI 35

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily. Length = 166

>gnl|CDD|206642 cd00876, Ras, Rat sarcoma (Ras) family of small guanosine triphosphatases (GTPases)

 Score = 49.4 bits (119), Expect = 4e-09
 Identities = 18/32 (56%), Positives = 23/32 (71%)

Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          KLV+LG   VGKS+L +RFV G+F E  + TI
Sbjct: 1  KLVVLGAGGVGKSALTIRFVSGEFVEEYDPTI 32

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 160

>gnl|CDD|224025 COG1100, COG1100, GTPase SAR1 and related small G proteins [General function prediction only]

 Score = 48.8 bits (116), Expect = 1e-08
 Identities = 15/35 (42%), Positives = 24/35 (68%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          ++K+V+LG+  VGK++L+ R V  +F E    TIG
Sbjct: 5  EFKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIG 39

Length = 219

>gnl|CDD|206654 cd01861, Rab6, Rab GTPase family 6 (Rab6)

 Score = 45.7 bits (109), Expect = 9e-08
 Identities = 15/34 (44%), Positives = 24/34 (70%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +KLV LG+ +VGK+S++ RF+   F    ++TIG
Sbjct: 1  HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIG 34

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 161

>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog Ypt1

 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +KL+L+G+S VGKS L+LRF    + E   STIG
Sbjct: 3  FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 36

Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 166

>gnl|CDD|133311 cd04111, Rab39, Rab GTPase family 39 (Rab39)

 Score = 44.8 bits (106), Expect = 3e-07
 Identities = 17/35 (48%), Positives = 27/35 (77%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          Q++L+++G+S VGKSSL+ RF  G+F E  + T+G
Sbjct: 2  QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVG 36

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 211

>gnl|CDD|206659 cd01867, Rab8_Rab10_Rab13_like, Rab GTPase families 8, 10, 13 (Rab8, Rab10, Rab13)

 Score = 43.8 bits (104), Expect = 6e-07
 Identities = 18/34 (52%), Positives = 24/34 (70%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +KL+L+G+S VGKS L+LRF    F+    STIG
Sbjct: 4  FKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIG 37

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 167

>gnl|CDD|206709 cd04137, RheB, Ras Homolog Enriched in Brain (RheB) is a small GTPase

 Score = 43.4 bits (103), Expect = 1e-06
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          Q K+ +LG  +VGKSSL ++FV G F E    TI
Sbjct: 1  QRKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTI 34

Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that leads to cell growth and cell-cycle progression. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 180

>gnl|CDD|206712 cd04141, Rit_Rin_Ric, Ras-like protein in all tissues (Rit), Ras-like protein in neurons (Rin) and Ras-related protein which interacts with calmodulin (Ric)

 Score = 42.5 bits (100), Expect = 1e-06
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          +YK+V+LG   VGKS++ ++F+   F +Y + TI
Sbjct: 2  EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTI 35

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to signal in parallel with the Ras pathway or stimulate the Ras pathway at some upstream point, and binding of calmodulin to Ric may negatively regulate Ric activity. Length = 172

>gnl|CDD|133324 cd04124, RabL2, Rab GTPase-like family 2 (Rab-like2)

 Score = 42.5 bits (100), Expect = 2e-06
 Identities = 17/31 (54%), Positives = 22/31 (70%)

Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQEST 61
          K++LLG+SAVGKS LV RF+   +   Q ST
Sbjct: 2  KIILLGDSAVGKSKLVERFLMDGYEPQQLST 32

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share > 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 161

>gnl|CDD|133267 cd01864, Rab19, Rab GTPase family 19 (Rab19)

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 17/34 (50%), Positives = 25/34 (73%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K++L+G+S VGK+ +V RF  G F E Q +TIG
Sbjct: 4  FKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIG 37

Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet characterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|206711 cd04140, ARHI_like, A Ras homolog member I (ARHI)

 Score = 42.1 bits (99), Expect = 3e-06
 Identities = 19/33 (57%), Positives = 23/33 (69%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          Y++V+ G   VGKSSLVLRFV+G F E    TI
Sbjct: 2  YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTI 34

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 165

>gnl|CDD|133375 cd04175, Rap1, Rap1 family GTPase consists of Rap1a and Rap1b isoforms

 Score = 41.7 bits (98), Expect = 3e-06
 Identities = 18/34 (52%), Positives = 25/34 (73%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          +YKLV+LG   VGKS+L ++FV+G F E  + TI
Sbjct: 1  EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI 34

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines; interestingly, in the SCCs, the active GTP-bound form localized to the nucleus, while the inactive GDP-bound form localized to the cytoplasm. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap1a, which is stimulated by T-cell receptor (TCR) activation, is a positive regulator of T cells by directing integrin activation and augmenting lymphocyte responses. In murine hippocampal neurons, Rap1b determines which neurite will become the axon and directs the recruitment of Cdc42, which is required for formation of dendrites and axons. In murine platelets, Rap1b is required for normal homeostasis in vivo and is involved in integrin activation. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133343 cd04143, Rhes_like, Ras homolog enriched in striatum (Rhes) and activator of G-protein signaling 1 (Dexras1/AGS1)

 Score = 42.4 bits (100), Expect = 3e-06
 Identities = 16/33 (48%), Positives = 24/33 (72%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          Y++V+LG S VGK+++V RF+ G+F E    TI
Sbjct: 1  YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTI 33

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression levels in other tissues. Dexras1 localizes primarily to the cytoplasm, and is a critical regulator of the circadian master clock to photic and nonphotic input. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 247

>gnl|CDD|206655 cd01862, Rab7, Rab GTPase family 7 (Rab7)

 Score = 41.9 bits (99), Expect = 3e-06
 Identities = 14/34 (41%), Positives = 25/34 (73%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           K+++LG+S VGK+SL+ ++V  +F    ++TIG
Sbjct: 1  LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG 34

Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 172

>gnl|CDD|206692 cd04107, Rab32_Rab38, Rab GTPase families 18 (Rab18) and 32 (Rab32)

 Score = 41.5 bits (98), Expect = 5e-06
 Identities = 13/34 (38%), Positives = 27/34 (79%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K++++G+  VGK+S++ R+V G F ++ ++TIG
Sbjct: 1  FKVLVIGDLGVGKTSIIKRYVHGVFSQHYKATIG 34

Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 201

>gnl|CDD|133306 cd04106, Rab23_like, Rab GTPase family 23 (Rab23)-like

 Score = 40.5 bits (95), Expect = 9e-06
 Identities = 15/33 (45%), Positives = 24/33 (72%)

Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          K++++G   VGKSS++ RFV+G F +  + TIG
Sbjct: 2  KVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIG 34

Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signaling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|133315 cd04115, Rab33B_Rab33A, Rab GTPase family 33 includes Rab33A and Rab33B

 Score = 40.5 bits (95), Expect = 1e-05
 Identities = 16/34 (47%), Positives = 25/34 (73%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K++++G+S VGK+ L  RF  G+F E  E+TIG
Sbjct: 3  FKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIG 36

Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|178657 PLN03110, PLN03110, Rab GTPase; Provisional

 Score = 40.3 bits (94), Expect = 2e-05
 Identities = 17/34 (50%), Positives = 26/34 (76%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K+VL+G+S VGKS+++ RF R +F    +STIG
Sbjct: 13 FKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIG 46

Length = 216

>gnl|CDD|206708 cd04136, Rap_like, Rap-like family consists of Rap1, Rap2 and RSR1

 Score = 39.9 bits (93), Expect = 2e-05
 Identities = 17/34 (50%), Positives = 25/34 (73%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          +YKLV+LG   VGKS+L ++FV+G F +  + TI
Sbjct: 1  EYKLVVLGSGGVGKSALTVQFVQGIFVDKYDPTI 34

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres. Rap2 is involved in multiple functions, including activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton and activation of the Wnt/beta-catenin signaling pathway in embryonic Xenopus. A number of effector proteins for Rap2 have been identified, including isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK), and the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. RSR1 is the fungal homolog of Rap1 and Rap2. In budding yeasts, it is involved in selecting a site for bud growth, which directs the establishment of cell polarization. The Rho family GTPase Cdc42 and its GEF, Cdc24, then establish an axis of polarized growth. It is believed that Cdc42 interacts directly with RSR1 in vivo. In filamentous fungi such as Ashbya gossypii, RSR1 is a key regulator of polar growth in the hypha. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133376 cd04176, Rap2, Rap2 family GTPase consists of Rap2a, Rap2b, and Rap2c

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          +YK+V+LG   VGKS+L ++FV G F E  + TI
Sbjct: 1  EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTI 34

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, including the RalGEFs RalGDS, RGL, and Rlf, which also interact with Rap1 and Ras. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|240284 PTZ00132, PTZ00132, GTP-binding nuclear protein Ran; Provisional

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 14/42 (33%), Positives = 27/42 (64%)

Query: 22 QTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          Q   ++ ++KL+L+G+  VGK++ V R + G+F +    T+G
Sbjct: 2  QQMDEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLG 43

Length = 215

>gnl|CDD|206698 cd04117, Rab15, Rab GTPase family 15 (Rab15)

 Score = 39.2 bits (91), Expect = 3e-05
 Identities = 16/34 (47%), Positives = 24/34 (70%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          ++L+L+G+S VGK+ L+ RF   +FH    STIG
Sbjct: 1  FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIG 34

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133318 cd04118, Rab24, Rab GTPase family 24 (Rab24)

 Score = 39.1 bits (91), Expect = 3e-05
 Identities = 16/35 (45%), Positives = 25/35 (71%), Gaps = 1/35 (2%)

Query: 31 KLVLLGESAVGKSSLVLRFVRGQF-HEYQESTIGG 64
          K+V+LG+ +VGK+SLV R+V  +F     ++TIG 
Sbjct: 2  KVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGA 36

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 193

>gnl|CDD|133314 cd04114, Rab30, Rab GTPase family 30 (Rab30)

 Score = 38.7 bits (90), Expect = 4e-05
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K+VL+G + VGK+ LV RF +G F   Q +TIG
Sbjct: 8  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG 41

Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 169

>gnl|CDD|133345 cd04145, M_R_Ras_like, R-Ras2/TC21, M-Ras/R-Ras3

 Score = 38.5 bits (90), Expect = 6e-05
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
           YKLV++G   VGKS+L ++F++  F    + TI
Sbjct: 2  TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTI 35

The M-Ras/R-Ras-like subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 164

>gnl|CDD|133377 cd04177, RSR1, RSR1/Bud1p family GTPase

 Score = 38.2 bits (89), Expect = 7e-05
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
           YK+V+LG   VGKS+L ++FV+  F E  + TI
Sbjct: 1  DYKIVVLGAGGVGKSALTVQFVQNVFIESYDPTI 34

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Length = 168

>gnl|CDD|133310 cd04110, Rab35, Rab GTPase family 35 (Rab35)

 Score = 38.3 bits (89), Expect = 8e-05
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +KL+++G+S VGKSSL+LRF    F     +TIG
Sbjct: 7  FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG 40

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 199

>gnl|CDD|206641 cd00157, Rho, Ras homology family (Rho) of small guanosine triphosphatases (GTPases)

 Score = 36.8 bits (86), Expect = 2e-04
 Identities = 11/29 (37%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 31 KLVLLGESAVGKSSLVLRFVRGQF-HEYQ 58
          K+V++G+ AVGK+ L++ +   +F  EY 
Sbjct: 2  KIVVVGDGAVGKTCLLISYTTNKFPTEYV 30

Members of the Rho (Ras homology) family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Since crystal structures often lack C-terminal residues, this feature is not available for annotation in many of the CDs in the hierarchy. Length = 171

>gnl|CDD|206697 cd04116, Rab9, Rab GTPase family 9 (Rab9)

 Score = 36.4 bits (84), Expect = 3e-04
 Identities = 16/33 (48%), Positives = 22/33 (66%)

Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          K++LLG+  VGKSSL+ R+V  +F      TIG
Sbjct: 7  KVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG 39

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 170

>gnl|CDD|133326 cd04126, Rab20, Rab GTPase family 20 (Rab20)

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 16/34 (47%), Positives = 25/34 (73%), Gaps = 1/34 (2%)

Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
          K+VLLG+  VGK+SL+ R++  +F +   ST+GG
Sbjct: 2  KVVLLGDMNVGKTSLLHRYMERRFKDT-VSTVGG 34

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 220

>gnl|CDD|206706 cd04134, Rho3, Ras homology family 3 (Rho3) of small guanosine triphosphatases (GTPases)

 Score = 36.4 bits (84), Expect = 4e-04
 Identities = 15/32 (46%), Positives = 22/32 (68%)

Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          K+V+LG+ A GK+SL+  F RG F +  E T+
Sbjct: 2  KVVVLGDGACGKTSLLNVFTRGYFPQVYEPTV 33

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Length = 185

>gnl|CDD|206658 cd01866, Rab2, Rab GTPase family 2 (Rab2)

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K +++G++ VGKS L+L+F   +F    + TIG
Sbjct: 5  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG 38

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 168

>gnl|CDD|219856 pfam08477, Miro, Miro-like protein

 Score = 35.1 bits (81), Expect = 5e-04
 Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 4/48 (8%)

Query: 31 KLVLLGESAVGKSSLVLRFVRGQF----HEYQESTIGGCGNVPGRDRQ 74
          K+V++G+   GKSSL+ + V G+F     E Q  T+         D  
Sbjct: 1  KVVVIGDKGSGKSSLLSQLVGGEFPPEPLEIQGDTLAVDTLEVDGDTG 48

Mitochondrial Rho proteins (Miro-1, and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis. Length = 116

>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1)

 Score = 35.4 bits (82), Expect = 7e-04
 Identities = 14/33 (42%), Positives = 25/33 (75%)

Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          K+ LLG++ +GK+SL++++V G+F E    T+G
Sbjct: 2  KIGLLGDAQIGKTSLMVKYVEGEFDEEYIQTLG 34

Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Length = 182

>gnl|CDD|206694 cd04109, Rab28, Rab GTPase family 28 (Rab28)

 Score = 35.5 bits (82), Expect = 8e-04
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           K+V+LG+ A GK+SL+ RF +  F +  + TIG
Sbjct: 1  IKIVVLGDGASGKTSLIRRFAQEGFGKSYKQTIG 34

Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumably the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 213

>gnl|CDD|206710 cd04139, RalA_RalB, Ral (Ras-like) family containing highly homologous RalA and RalB

 Score = 35.1 bits (81), Expect = 9e-04
 Identities = 13/33 (39%), Positives = 22/33 (66%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          +K++++G   VGKS+L L+F+  +F E  E T 
Sbjct: 1  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTK 33

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (>80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exocyst and for localizing the exocyst to the leading edge of migrating cells. In human cancer cells, RalA is required to support anchorage-independent proliferation and RalB is required to suppress apoptosis. RalA has been shown to localize to the plasma membrane while RalB is localized to the intracellular vesicles. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 163

>gnl|CDD|133338 cd04138, H_N_K_Ras_like, Ras GTPase family containing H-Ras,N-Ras and K-Ras4A/4B

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          +YKLV++G   VGKS+L ++ ++  F +  + TI
Sbjct: 1  EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI 34

H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1. Others are proposed to play negative regulatory roles in oncogenesis, including RASSF and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation. Length = 162

>gnl|CDD|178620 PLN03071, PLN03071, GTP-binding nuclear protein Ran; Provisional

 Score = 35.1 bits (81), Expect = 0.001
 Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 1/45 (2%)

Query: 19 PNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          PN QT      +KLV++G+   GK++ V R + G+F +  E TIG
Sbjct: 4  PNQQTVDYP-SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIG 47

Length = 219

>gnl|CDD|240385 PTZ00369, PTZ00369, Ras-like protein; Provisional

 Score = 34.5 bits (79), Expect = 0.002
 Identities = 14/34 (41%), Positives = 24/34 (70%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          +YKLV++G   VGKS+L ++F++  F +  + TI
Sbjct: 5  EYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTI 38

Length = 189

>gnl|CDD|206695 cd04112, Rab26, Rab GTPase family 26 (Rab26)

 Score = 34.1 bits (78), Expect = 0.002
 Identities = 12/25 (48%), Positives = 20/25 (80%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQF 54
          +K++L+G+S VGK+ L++RF  G F
Sbjct: 1  FKVMLVGDSGVGKTCLLVRFKDGAF 25

Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Length = 191

>gnl|CDD|206715 cd04148, RGK, Rem, Rem2, Rad, Gem/Kir (RGK) subfamily of Ras GTPases

 Score = 33.5 bits (77), Expect = 0.004
 Identities = 14/23 (60%), Positives = 17/23 (73%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRG 52
          Y++VLLG+S VGKSSL   F  G
Sbjct: 1  YRVVLLGDSGVGKSSLANIFTAG 23

RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ras superfamily members. The N-terminal extension is not conserved among family members; the C-terminal extension is reported to be conserved among the family and lack the CaaX prenylation motif typical of membrane-associated Ras proteins. However, a putative CaaX motif has been identified in the alignment of the C-terminal residues of this CD. Length = 219

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	76
2hei_A	179	Crystal Structure Of Human Rab5b In Complex With Gd		5e-16
3mjh_A	168	Crystal Structure Of Human Rab5a In Complex With Th		1e-15
1tu3_A	171	Crystal Structure Of Rab5 Complex With Rabaptin5 C-		1e-15
1n6h_A	170	Crystal Structure Of Human Rab5a Length = 170		1e-15
1tu4_A	171	Crystal Structure Of Rab5-Gdp Complex Length = 171		2e-15
1huq_A	164	1.8a Crystal Structure Of The Monomeric Gtpase Rab5		2e-15
1z0d_A	167	Gdp-bound Rab5c Gtpase Length = 167		2e-15
1n6o_A	170	Crystal Structure Of Human Rab5a A30k Mutant Comple		6e-15
1n6p_A	170	Crystal Structure Of Human Rab5a A30e Mutant Comple		6e-15
1n6i_A	170	Crystal Structure Of Human Rab5a A30p Mutant Comple		7e-15
1n6r_A	170	Crystal Structure Of Human Rab5a A30l Mutant Comple		7e-15
1n6n_A	170	Crystal Structure Of Human Rab5a A30r Mutant Comple		9e-15
1z07_A	166	Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166		1e-14
2efc_B	181	Ara7-GdpATVPS9A Length = 181		2e-08
1ek0_A	170	Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 17		2e-07
3clv_A	208	Crystal Structure Of Rab5a From Plasmodium Falcipar		3e-07
1d5c_A	162	Crystal Structure Of Plasmodium Falciparum Rab6 Com		1e-04
2f9l_A	199	3d Structure Of Inactive Human Rab11b Gtpase Length		1e-04
3bfk_A	181	Crystal Structure Of Plasmodium Falciparum Rab11a I		1e-04
3cpj_B	223	Crystal Structure Of Ypt31 In Complex With Yeast Ra		2e-04
1oiv_A	191	X-Ray Structure Of The Small G Protein Rab11a In Co		2e-04
1oiw_A	191	X-ray Structure Of The Small G Protein Rab11a In Co		2e-04
2gzd_A	173	Crystal Structure Of Rab11 In Complex With Rab11-Fi		2e-04
1yzk_A	184	Gppnhp Bound Rab11 Gtpase Length = 184		2e-04
2hv8_A	172	Crystal Structure Of Gtp-Bound Rab11 In Complex Wit		2e-04
2d7c_A	167	Crystal Structure Of Human Rab11 In Complex With Fi		2e-04
3cwz_A	188	Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188		3e-04
2y8e_A	179	Crystal Structure Of D. Melanogaster Rab6 Gtpase Bo		3e-04
2gil_A	162	Structure Of The Extremely Slow Gtpase Rab6a In The		3e-04
1yzq_A	170	Gppnhp-Bound Rab6 Gtpase Length = 170		3e-04
4dkx_A	216	Crystal Structure Of The Rab 6a'(Q72l) Length = 216		3e-04
3bbp_A	211	Rab6-Gtp:gcc185 Rab Binding Domain Complex Length =		4e-04
2fe4_A	171	The Crystal Structure Of Human Neuronal Rab6b In It		4e-04
1z08_A	170	Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170		4e-04
2hup_A	201	Crystal Structure Of Human Rab43 In Complex With Gd		6e-04
2oil_A	193	Crystal Structure Of Human Rab25 In Complex With Gd		6e-04
3tso_A	178	Structure Of The Cancer Associated Rab25 Protein In		6e-04
2p5s_A	199	Rab Domain Of Human Rasef In Complex With Gdp Lengt		7e-04

>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp Length = 179

Iteration: 1
 Score = 79.3 bits (194), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 36/43 (83%), Positives = 40/43 (93%)
Query: 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          + +KICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 2  SASKICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 44

>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2 Zinc Finger Of Eea1 Length = 168

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/40 (87%), Positives = 38/40 (95%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG  
Sbjct: 2  KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAA 41

>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5 C-Terminal Domain Length = 171

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/40 (87%), Positives = 38/40 (95%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG  
Sbjct: 4  KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAA 43

>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a Length = 170

Iteration: 1
 Score = 77.8 bits (190), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 35/40 (87%), Positives = 38/40 (95%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG  
Sbjct: 3  KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAA 42

>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex Length = 171

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/40 (87%), Positives = 38/40 (95%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG  
Sbjct: 4  KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAA 43

>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c (Mouse) Length = 164

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 37/39 (94%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          ICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 1  ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 39

>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase Length = 167

Iteration: 1
 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 35/39 (89%), Positives = 37/39 (94%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          ICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTIG  
Sbjct: 3  ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTIGAA 41

>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 34/40 (85%), Positives = 37/40 (92%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG  
Sbjct: 3  KICQFKLVLLGESKVGKSSLVLRFVKGQFHEFQESTIGAA 42

>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 75.5 bits (184), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 34/40 (85%), Positives = 37/40 (92%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG  
Sbjct: 3  KICQFKLVLLGESEVGKSSLVLRFVKGQFHEFQESTIGAA 42

>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With Gdp Length = 170

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 34/40 (85%), Positives = 37/40 (92%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG  
Sbjct: 3  KICQFKLVLLGESPVGKSSLVLRFVKGQFHEFQESTIGAA 42

>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 75.5 bits (184), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 34/40 (85%), Positives = 37/40 (92%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG  
Sbjct: 3  KICQFKLVLLGESLVGKSSLVLRFVKGQFHEFQESTIGAA 42

>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With Gppnhp Length = 170

Iteration: 1
 Score = 75.1 bits (183), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 34/40 (85%), Positives = 37/40 (92%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          KICQ+KLVLLGES VGKSSLVLRFV+GQFHE+QESTIG  
Sbjct: 3  KICQFKLVLLGESRVGKSSLVLRFVKGQFHEFQESTIGAA 42

>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase Length = 166

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 34/36 (94%), Positives = 36/36 (100%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          ICQ+KLVLLGESAVGKSSLVLRFV+GQFHEYQESTI
Sbjct: 3  ICQFKLVLLGESAVGKSSLVLRFVKGQFHEYQESTI 38

>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A Length = 181

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 26/40 (65%), Positives = 29/40 (72%)
Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          K    KLVLLG+   GKSSLVLRFV+ QF E+QESTIG  
Sbjct: 9  KSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAA 48

>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution Length = 170

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/39 (61%), Positives = 28/39 (71%)
Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          +   KLVLLGE+AVGKSS+VLRFV   F E +E TIG  
Sbjct: 1  VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAA 39

>pdb|3CLV|A Chain A, Crystal Structure Of Rab5a From Plasmodium Falciparum, Pfb0500c Length = 208

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 22/35 (62%), Positives = 26/35 (74%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
          YK VLLGES+VGKSS+VLR  +  FHE   +TIG 
Sbjct: 8  YKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGA 42

>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed With Gdp Length = 162

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +YKLV LGE AVGK+S++ RF    F    +STIG
Sbjct: 1  KYKLVFLGEQAVGKTSIITRFXYDTFDNNYQSTIG 35

>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase Length = 199

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K+VL+G+S VGKS+L+ RF R +F+   +STIG
Sbjct: 6  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 39

>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In Complex With Gdp Length = 181

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K+VL+G+S VGKS+L+ RF R +F+   +STIG
Sbjct: 8  FKIVLIGDSGVGKSNLLSRFTRDEFNLESKSTIG 41

>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi Length = 223

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K+VL+G+S VGKS+L+ RF + +F+   +STIG
Sbjct: 14 FKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIG 47

>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex With Gdp Length = 191

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K+VL+G+S VGKS+L+ RF R +F+   +STIG
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 63

>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex With Gtpgammas Length = 191

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K+VL+G+S VGKS+L+ RF R +F+   +STIG
Sbjct: 30 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 63

>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2 Length = 173

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K+VL+G+S VGKS+L+ RF R +F+   +STIG
Sbjct: 12 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 45

>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase Length = 184

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K+VL+G+S VGKS+L+ RF R +F+   +STIG
Sbjct: 21 FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 54

>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3 Length = 172

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K+VL+G+S VGKS+L+ RF R +F+   +STIG
Sbjct: 9  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 42

>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab- Binding Domain Length = 167

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/34 (52%), Positives = 27/34 (79%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K+VL+G+S VGKS+L+ RF R +F+   +STIG
Sbjct: 6  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 39

>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex Length = 188

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          ++KLV LGE +VGK+SL+ RF+   F    ++TIG
Sbjct: 6  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 40

>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To Gmppnp Length = 179

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          ++KLV LGE +VGK+SL+ RF+   F    ++TIG
Sbjct: 14 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 48

>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp Bound Form At 1.8 Resolution Length = 162

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          ++KLV LGE +VGK+SL+ RF+   F    ++TIG
Sbjct: 1  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 35

>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase Length = 170

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          ++KLV LGE +VGK+SL+ RF+   F    ++TIG
Sbjct: 6  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 40

>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l) Length = 216

Iteration: 1
 Score = 40.0 bits (92), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          ++KLV LGE +VGK+SL+ RF+   F    ++TIG
Sbjct: 13 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 47

>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex Length = 211

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          ++KLV LGE +VGK+SL+ RF+   F    ++TIG
Sbjct: 16 KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 50

>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its Inactive Gdp-Bound Form Length = 171

Iteration: 1
 Score = 40.0 bits (92), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 25/35 (71%)
Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          ++KLV LGE +VGK+SL+ RF+   F    ++TIG
Sbjct: 2  KFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 36

>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase Length = 170

Iteration: 1
 Score = 39.7 bits (91), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
          +K+VLLGE  VGK+SLVLR+   +F++   +T+G 
Sbjct: 7  FKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGA 41

>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp Length = 201

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 26/34 (76%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +KLVL+G+++VGK+ +V RF  G F E Q STIG
Sbjct: 30 FKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIG 63

>pdb|2OIL|A Chain A, Crystal Structure Of Human Rab25 In Complex With Gdp Length = 193

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K+VL+GES VGK++L+ RF R +F     +TIG
Sbjct: 26 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG 59

>pdb|3TSO|A Chain A, Structure Of The Cancer Associated Rab25 Protein In Complex With Fip2 Length = 178

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 17/34 (50%), Positives = 25/34 (73%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K+VL+GES VGK++L+ RF R +F     +TIG
Sbjct: 11 FKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG 44

>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp Length = 199

Iteration: 1
 Score = 38.9 bits (89), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 16/34 (47%), Positives = 25/34 (73%)
Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          YK+VL G++AVGKSS ++R  + +F E   +T+G
Sbjct: 29 YKIVLAGDAAVGKSSFLMRLCKNEFRENISATLG 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	76
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	9e-20
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	1e-19
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	2e-19
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	2e-19
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	9e-19
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	6e-18
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	8e-18
3bbp_A	211	RAB-6, RAS-related protein RAB-6A; golgi complex,	2e-17
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	3e-16
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	8e-16
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	2e-15
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	2e-15
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	3e-15
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	4e-15
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	6e-15
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	7e-15
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	8e-15
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	8e-15
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	3e-14
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	4e-14
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	4e-14
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	4e-14
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	4e-14
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	4e-14
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	5e-14
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	7e-14
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	9e-14
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	1e-13
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	1e-13
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	1e-13
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	1e-13
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	1e-13
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	2e-13
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	2e-13
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	2e-13
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	2e-13
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	2e-13
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	3e-13
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	4e-13
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	5e-13
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	5e-13
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	5e-13
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	5e-13
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	5e-13
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	7e-13
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	7e-13
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	8e-13
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	9e-13
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	9e-13
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	1e-12
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	2e-12
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	2e-12
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	2e-12
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	3e-12
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	4e-12
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	5e-12
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	6e-12
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	6e-12
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	7e-12
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	9e-12
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	1e-11
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	1e-11
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	1e-11
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	2e-11
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	4e-11
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	5e-11
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	8e-11
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	1e-10
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	2e-10
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	4e-09
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	6e-08
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	2e-07
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	4e-07
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	7e-07
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	7e-07
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	1e-06
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	1e-06
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	2e-06
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	3e-06
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	5e-06
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	1e-05
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	1e-05
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	4e-05

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 170

 Score = 76.8 bits (189), Expect = 9e-20
 Identities = 24/37 (64%), Positives = 28/37 (75%)

Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +   KLVLLGE+AVGKSS+VLRFV   F E +E TIG
Sbjct: 1  VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* Length = 170

 Score = 76.4 bits (189), Expect = 1e-19
 Identities = 16/39 (41%), Positives = 24/39 (61%)

Query: 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          + + + K+ LLG++ VGKSS++ RFV   F      TIG
Sbjct: 2  SALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIG 40

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* Length = 170

 Score = 75.6 bits (187), Expect = 2e-19
 Identities = 35/38 (92%), Positives = 38/38 (100%)

Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG
Sbjct: 3  KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIG 40

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 Length = 192

 Score = 76.1 bits (188), Expect = 2e-19
 Identities = 21/63 (33%), Positives = 33/63 (52%), Gaps = 6/63 (9%)

Query: 1  MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
          M +S++ + +  G           + I + K+ LLG++ VGKSS+V RFV+  F      
Sbjct: 1  MGSSHHHHHHSSGLV------PRGSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISP 54

Query: 61 TIG 63
          TIG
Sbjct: 55 TIG 57

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* Length = 181

 Score = 74.1 bits (183), Expect = 9e-19
 Identities = 26/42 (61%), Positives = 29/42 (69%)

Query: 22 QTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
              K    KLVLLG+   GKSSLVLRFV+ QF E+QESTIG
Sbjct: 5  AAGNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIG 46

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* Length = 179

 Score = 72.2 bits (178), Expect = 6e-18
 Identities = 17/44 (38%), Positives = 27/44 (61%)

Query: 20 NDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +      + ++KLV LGE +VGK+SL+ RF+   F    ++TIG
Sbjct: 5  SGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 48

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* Length = 170

 Score = 71.4 bits (176), Expect = 8e-18
 Identities = 17/39 (43%), Positives = 28/39 (71%)

Query: 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          ++   +K+VLLGE  VGK+SLVLR+   +F++   +T+G
Sbjct: 2  SRAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLG 40

>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB GTPase, ARL GTPase, golgin, RAB effector, clAsp protein; HET: GTP; 3.00A {Homo sapiens} Length = 211

 Score = 71.2 bits (175), Expect = 2e-17
 Identities = 18/50 (36%), Positives = 27/50 (54%)

Query: 14 GRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          G            + ++KLV LGE +VGK+SL+ RF+   F    ++TIG
Sbjct: 1  GPGMSTGGDFGNPLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIG 50

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* Length = 178

 Score = 68.0 bits (167), Expect = 3e-16
 Identities = 15/36 (41%), Positives = 22/36 (61%)

Query: 28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           Q K+V+LG+ A GK+SL   F +  F +  + TIG
Sbjct: 5  RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIG 40

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} Length = 218

 Score = 67.3 bits (165), Expect = 8e-16
 Identities = 12/43 (27%), Positives = 25/43 (58%)

Query: 21 DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
             + +   YK+ L+G+  VGK++ + R + G+F +   +T+G
Sbjct: 3  GSMERRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVG 45

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 196

 Score = 66.1 bits (162), Expect = 2e-15
 Identities = 18/59 (30%), Positives = 33/59 (55%)

Query: 5  NNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          ++ +S+G     +    Q+ AK  + KL + G + VGKS+LV+RF+  +F    + T+ 
Sbjct: 4  HHHHSSGVDLGTENLYFQSMAKSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 62

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} Length = 193

 Score = 65.7 bits (161), Expect = 2e-15
 Identities = 20/60 (33%), Positives = 35/60 (58%), Gaps = 3/60 (5%)

Query: 4  SNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          S++ + +   G + R ++        +K+VL+GES VGK++L+ RF R +F     +TIG
Sbjct: 3  SSHHHHHHSSGLVPRGSEDYN---FVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIG 59

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} Length = 208

 Score = 65.6 bits (160), Expect = 3e-15
 Identities = 23/38 (60%), Positives = 27/38 (71%)

Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          K   YK VLLGES+VGKSS+VLR  +  FHE   +TIG
Sbjct: 4  KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIG 41

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C* ... Length = 221

 Score = 65.4 bits (160), Expect = 4e-15
 Identities = 14/35 (40%), Positives = 24/35 (68%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          Q+KLVL+G+   GK++ V R + G+F +   +T+G
Sbjct: 15 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLG 49

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} Length = 201

 Score = 64.9 bits (159), Expect = 6e-15
 Identities = 20/65 (30%), Positives = 32/65 (49%), Gaps = 9/65 (13%)

Query: 1  MANSNNSNSNGRGGRIQRPN--DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQ 58
          M + ++ +S        R N   Q    +   K+V+LG   VGK+SL  +FV G+F E  
Sbjct: 1  MHHHHHHSS-------GRENLYFQGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGY 53

Query: 59 ESTIG 63
          + T+ 
Sbjct: 54 DPTVE 58

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} Length = 199

 Score = 64.6 bits (158), Expect = 7e-15
 Identities = 20/63 (31%), Positives = 39/63 (61%), Gaps = 1/63 (1%)

Query: 1  MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
          M +S++ + +  G  + R + ++ +    YK+VL G++AVGKSS ++R  + +F E   +
Sbjct: 1  MGSSHHHHHHSSGL-VPRGSAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISA 59

Query: 61 TIG 63
          T+G
Sbjct: 60 TLG 62

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A Length = 178

 Score = 64.2 bits (157), Expect = 8e-15
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG 64
          +   I + +L +LG++  GKSSL+ RF+ G +    E T   
Sbjct: 1  SMRSIPELRLGVLGDARSGKSSLIHRFLTGSYQVL-EKTESE 41

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* Length = 168

 Score = 63.7 bits (156), Expect = 8e-15
 Identities = 15/39 (38%), Positives = 24/39 (61%)

Query: 25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
                K+V++G  AVGKSS++ R+ +G F +  + TIG
Sbjct: 1  GSEVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIG 39

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} Length = 200

 Score = 63.0 bits (154), Expect = 3e-14
 Identities = 14/60 (23%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 4  SNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          S++ + +   G + R +  +      +K +++G +  GKS L+ +F+  +F +    TIG
Sbjct: 3  SSHHHHHHSSGLVPRGSIWSD---FLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIG 59

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* Length = 207

 Score = 62.7 bits (153), Expect = 4e-14
 Identities = 16/41 (39%), Positives = 27/41 (65%)

Query: 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          T  K    K+++LG+S VGK+SL+ ++V  +F    ++TIG
Sbjct: 2  TSRKKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIG 42

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* Length = 181

 Score = 62.2 bits (152), Expect = 4e-14
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
            K+ +LG  +VGKSSL ++FV GQF +  + TI 
Sbjct: 6  SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIE 40

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* Length = 199

 Score = 62.7 bits (153), Expect = 4e-14
 Identities = 18/35 (51%), Positives = 27/35 (77%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           +K+VL+G+S VGKS+L+ RF R +F+   +STIG
Sbjct: 5  LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 39

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* Length = 191

 Score = 62.6 bits (153), Expect = 4e-14
 Identities = 18/35 (51%), Positives = 27/35 (77%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           +K+VL+G+S VGKS+L+ RF R +F+   +STIG
Sbjct: 29 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIG 63

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* Length = 187

 Score = 62.2 bits (152), Expect = 4e-14
 Identities = 14/45 (31%), Positives = 25/45 (55%)

Query: 19 PNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
              +Q  +  +K++++G   VGKS+L L+F+  +F E  E T  
Sbjct: 8  GGGGSQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 52

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* Length = 179

 Score = 61.8 bits (151), Expect = 5e-14
 Identities = 12/35 (34%), Positives = 20/35 (57%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           +K +++G+  VGKS L+ +F   +F      TIG
Sbjct: 15 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIG 49

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} Length = 201

 Score = 61.9 bits (151), Expect = 7e-14
 Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 1/61 (1%)

Query: 4  SNNSNSNGRGGRIQRPNDQTQAKI-CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          S++ + +   G + R +     +    +KLVL+G+++VGK+ +V RF  G F E Q STI
Sbjct: 3  SSHHHHHHSSGLVPRGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTI 62

Query: 63 G 63
          G
Sbjct: 63 G 63

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* Length = 182

 Score = 61.4 bits (150), Expect = 9e-14
 Identities = 14/34 (41%), Positives = 26/34 (76%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           K+++LG+S VGK+SL+ R+V  ++ +  ++TIG
Sbjct: 9  LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIG 42

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* Length = 191

 Score = 61.5 bits (150), Expect = 1e-13
 Identities = 13/51 (25%), Positives = 24/51 (47%)

Query: 13 GGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
                 +         +K +++G++ VGKS L+L+F   +F    + TIG
Sbjct: 5  HHHHHHSSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIG 55

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C Length = 208

 Score = 61.5 bits (150), Expect = 1e-13
 Identities = 12/55 (21%), Positives = 22/55 (40%), Gaps = 2/55 (3%)

Query: 11 GRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVR--GQFHEYQESTIG 63
                +           + K+ ++GE+ VGKS+L+  F     +F +    T G
Sbjct: 2  AASMVKKEVKPIDITATLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSG 56

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 201

 Score = 61.1 bits (149), Expect = 1e-13
 Identities = 20/61 (32%), Positives = 34/61 (55%), Gaps = 2/61 (3%)

Query: 3  NSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
           S++ + +   G + R + +       +K+VL+G + VGK+ LV RF +G F   Q +TI
Sbjct: 2  GSSHHHHHHSSGLVPRGSMEDYD--FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATI 59

Query: 63 G 63
          G
Sbjct: 60 G 60

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* Length = 167

 Score = 60.6 bits (148), Expect = 1e-13
 Identities = 17/35 (48%), Positives = 24/35 (68%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +YK+V+LG   VGKS+L ++FV G F E  + TI 
Sbjct: 3  EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIE 37

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... Length = 166

 Score = 60.6 bits (148), Expect = 1e-13
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +YKLV++G   VGKS+L ++ ++  F +  + TI 
Sbjct: 3  EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIE 37

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} Length = 223

 Score = 61.3 bits (149), Expect = 2e-13
 Identities = 17/35 (48%), Positives = 27/35 (77%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           +K+VL+G+S VGKS+L+ RF + +F+   +STIG
Sbjct: 13 LFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIG 47

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* Length = 189

 Score = 60.7 bits (148), Expect = 2e-13
 Identities = 15/35 (42%), Positives = 25/35 (71%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           +K++++G+S VGK+ L  RF  G+F +  E+TIG
Sbjct: 20 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG 54

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* Length = 177

 Score = 60.2 bits (147), Expect = 2e-13
 Identities = 16/34 (47%), Positives = 23/34 (67%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K++LLG+  VGKSSL+ R+V  +F      TIG
Sbjct: 8  FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG 41

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 Length = 172

 Score = 60.2 bits (147), Expect = 2e-13
 Identities = 17/35 (48%), Positives = 22/35 (62%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           Y++ + G   VGKSSLVLRFV+G F E    T+ 
Sbjct: 3  DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 37

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} Length = 195

 Score = 60.7 bits (148), Expect = 2e-13
 Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 6/63 (9%)

Query: 1  MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
          M + ++ +S       Q   D        +K++L+GES VGKS+L   F   Q     E 
Sbjct: 1  MHHHHHHSSGRENLYFQGQKD------GIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEP 54

Query: 61 TIG 63
             
Sbjct: 55 ENP 57

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} Length = 187

 Score = 59.9 bits (146), Expect = 3e-13
 Identities = 13/63 (20%), Positives = 26/63 (41%), Gaps = 8/63 (12%)

Query: 1  MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
          M + ++ +S       Q P +          L +LG    GKS+L ++F+  +F    + 
Sbjct: 1  MHHHHHHSSGRENLYFQGPLE--------VNLAILGRRGAGKSALTVKFLTKRFISEYDP 52

Query: 61 TIG 63
           + 
Sbjct: 53 NLE 55

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* Length = 186

 Score = 59.5 bits (145), Expect = 4e-13
 Identities = 11/35 (31%), Positives = 21/35 (60%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           +K +++G +  GKS L+ +F+  +F +    TIG
Sbjct: 10 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIG 44

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* Length = 181

 Score = 59.5 bits (145), Expect = 5e-13
 Identities = 13/35 (37%), Positives = 22/35 (62%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           +KLV++G   VGKS+L ++F++  F    + TI 
Sbjct: 9  THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIE 43

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* Length = 190

 Score = 59.5 bits (145), Expect = 5e-13
 Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 8/63 (12%)

Query: 1  MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
          M + ++ +S       Q           +YKLV++G   VGKS+L ++ ++  F +  + 
Sbjct: 1  MHHHHHHSSGRENLYFQGMT--------EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDP 52

Query: 61 TIG 63
          TI 
Sbjct: 53 TIE 55

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} Length = 169

 Score = 59.1 bits (144), Expect = 5e-13
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K++L+GES VGKS+L   F   Q     E    
Sbjct: 3  FKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENS 36

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* Length = 168

 Score = 59.0 bits (144), Expect = 5e-13
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K++++G   VGKS+L L+F+  +F E  E T  
Sbjct: 5  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 38

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 Length = 195

 Score = 59.6 bits (145), Expect = 5e-13
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
            K++++GES VGKSSL+LRF    F     +TIG
Sbjct: 15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIG 49

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} Length = 196

 Score = 59.2 bits (144), Expect = 7e-13
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           +KL+L+G+S VGKS L+LRF    + E   STIG
Sbjct: 16 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIG 50

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* Length = 189

 Score = 59.1 bits (144), Expect = 7e-13
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +YKLV++G   VGKS+L ++ ++  F +  + TI 
Sbjct: 4  EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIE 38

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* Length = 167

 Score = 58.7 bits (143), Expect = 8e-13
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +YKLV+LG   VGKS+L ++FV+G F E  + TI 
Sbjct: 3  EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE 37

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} Length = 206

 Score = 59.2 bits (144), Expect = 9e-13
 Identities = 14/44 (31%), Positives = 25/44 (56%)

Query: 20 NDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
            + Q  +  +K++++G   VGKS+L L+F+  +F E  E T  
Sbjct: 5  KPKGQNSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKA 48

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} Length = 199

 Score = 58.8 bits (143), Expect = 9e-13
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 2/64 (3%)

Query: 2  ANSNNSNSNGRGGRIQRPNDQTQAKICQY--KLVLLGESAVGKSSLVLRFVRGQFHEYQE 59
          ++ ++ +S+G     Q     +      Y  KL+L+G+S VGKS L+LRF    + E   
Sbjct: 4  SHHHHHHSSGENLYFQGRPMSSMNPEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYI 63

Query: 60 STIG 63
          STIG
Sbjct: 64 STIG 67

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 199

 Score = 58.8 bits (143), Expect = 1e-12
 Identities = 18/35 (51%), Positives = 23/35 (65%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           Y++V+ G   VGKSSLVLRFV+G F +    TI 
Sbjct: 8  DYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIE 42

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* Length = 183

 Score = 57.9 bits (141), Expect = 2e-12
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           YKLV++G+  VGKS+L ++F +  F +  + TI 
Sbjct: 18 TYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIE 52

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} Length = 192

 Score = 58.0 bits (141), Expect = 2e-12
 Identities = 16/60 (26%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 4  SNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          S++ + +   G + R + +      + +++++G   VGK+SL+ RF    F E  +ST+G
Sbjct: 3  SSHHHHHHSSGLVPRGSPRPAD--FKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVG 60

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* Length = 206

 Score = 58.1 bits (141), Expect = 2e-12
 Identities = 17/34 (50%), Positives = 22/34 (64%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +KL+L+G S VGKS L+LRF    +     STIG
Sbjct: 9  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIG 42

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} Length = 181

 Score = 57.6 bits (140), Expect = 3e-12
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +KL+++G+S VGKSSL+LRF    F     +TIG
Sbjct: 10 FKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIG 43

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A Length = 170

 Score = 56.8 bits (138), Expect = 4e-12
 Identities = 16/34 (47%), Positives = 25/34 (73%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           K++L+G+S VGKS L++RFV  +F+    +TIG
Sbjct: 4  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG 37

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* Length = 189

 Score = 56.8 bits (138), Expect = 5e-12
 Identities = 14/34 (41%), Positives = 22/34 (64%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +KL+L+G S+VGK+S + R+    F     ST+G
Sbjct: 23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVG 56

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* Length = 195

 Score = 56.9 bits (138), Expect = 6e-12
 Identities = 12/35 (34%), Positives = 23/35 (65%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
            K + LG+S VGK+S++ ++  G+F+    +T+G
Sbjct: 11 LIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVG 45

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} Length = 191

 Score = 56.9 bits (138), Expect = 6e-12
 Identities = 13/34 (38%), Positives = 22/34 (64%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +KL+++G S+VGK+S + R+    F     ST+G
Sbjct: 24 FKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVG 57

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* Length = 183

 Score = 56.4 bits (137), Expect = 7e-12
 Identities = 15/35 (42%), Positives = 23/35 (65%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           +KL+L+G+S VGK+ ++ RF    F+    STIG
Sbjct: 8  LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG 42

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 Length = 213

 Score = 56.6 bits (137), Expect = 9e-12
 Identities = 16/34 (47%), Positives = 25/34 (73%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           K++L+G+S VGKS L++RFV  +F+    +TIG
Sbjct: 21 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG 54

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 Length = 203

 Score = 56.1 bits (136), Expect = 1e-11
 Identities = 12/35 (34%), Positives = 22/35 (62%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           +K++++G S+VGK+S + R+    F     ST+G
Sbjct: 8  MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVG 42

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* Length = 184

 Score = 55.8 bits (135), Expect = 1e-11
 Identities = 9/37 (24%), Positives = 24/37 (64%), Gaps = 2/37 (5%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEY--QESTIG 63
          + KL+++G +  GK++L+ + ++ +  +   Q +T+G
Sbjct: 2  RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVG 38

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* Length = 217

 Score = 56.2 bits (136), Expect = 1e-11
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 3  NSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
           S++ + +   G + R +          KL+ LG+S VGK++ + R+   +F+    +T+
Sbjct: 2  GSSHHHHHHSSGLVPRGSGDYDY---LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTV 58

Query: 63 G 63
          G
Sbjct: 59 G 59

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} Length = 175

 Score = 54.9 bits (133), Expect = 2e-11
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          Y++VLLG+  VGK+SL   F   Q  +  E   
Sbjct: 5  YRVVLLGDPGVGKTSLASLFAGKQERDLHEQLG 37

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum} Length = 535

 Score = 55.8 bits (134), Expect = 4e-11
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 17 QRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           R   +    + + K+ L+G+   GK+SL+ + +   F   +  T G
Sbjct: 29 ARSKGEALVHLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHG 75

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* Length = 166

 Score = 54.0 bits (131), Expect = 5e-11
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          YK++LLG   VGKS+L   F   +         G
Sbjct: 3  YKVLLLGAPGVGKSALARIFGGVEDGPE-AEAAG 35

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} Length = 184

 Score = 53.7 bits (130), Expect = 8e-11
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)

Query: 17 QRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           R N   Q    + K+ ++G  + GKS+LV R++ G + + +    G
Sbjct: 10 GRENLYFQGP--ELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 Length = 180

 Score = 53.0 bits (128), Expect = 1e-10
 Identities = 15/36 (41%), Positives = 24/36 (66%), Gaps = 1/36 (2%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQE-STIG 63
           +K++L+G+S VGK+ L++RF  G F      ST+G
Sbjct: 10 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVG 45

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* Length = 192

 Score = 52.7 bits (127), Expect = 2e-10
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQF-HEYQESTIG 63
          Y++VL+GE  VGKS+L   F       +     +G
Sbjct: 7  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEVLG 41

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 Length = 211

 Score = 49.6 bits (119), Expect = 4e-09
 Identities = 12/35 (34%), Positives = 16/35 (45%), Gaps = 2/35 (5%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQ--FHEYQESTI 62
          Y++VL+GE  VGKS+L   F           E   
Sbjct: 38 YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLG 72

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* Length = 194

 Score = 46.2 bits (110), Expect = 6e-08
 Identities = 14/57 (24%), Positives = 27/57 (47%)

Query: 7  SNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          SN+      +     + +      K+V++G+ AVGK+ L+L F +G+       T+ 
Sbjct: 1  SNAMLAFSDMNTGAGKIENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVF 57

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 Length = 207

 Score = 44.7 bits (106), Expect = 2e-07
 Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)

Query: 6  NSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          + +S+G     +    Q+  +    KLV++G+ A GK+ L++ F + +F E    T+
Sbjct: 5  HHHSSGVDLGTENLYFQSMIRK---KLVVVGDGACGKTCLLIVFSKDEFPEVYVPTV 58

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* Length = 214

 Score = 44.1 bits (104), Expect = 4e-07
 Identities = 13/54 (24%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 9  SNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          S+GR     +     Q  + + KLVL+G+   GK++++    +  + E    T+
Sbjct: 8  SSGRENLYFQGRA-PQPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTV 60

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 Length = 194

 Score = 43.3 bits (102), Expect = 7e-07
 Identities = 13/53 (24%), Positives = 24/53 (45%), Gaps = 3/53 (5%)

Query: 10 NGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          +   GR    +      +   K V++G+ AVGK+ L++ +    F E    T+
Sbjct: 2  SPGAGRSSMAHGPGALML---KCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV 51

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 Length = 205

 Score = 43.2 bits (102), Expect = 7e-07
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)

Query: 1  MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
           ++ ++ +S+G   R    +     K    K+V++G+S  GK++L+  F +  F E    
Sbjct: 3  SSHHHHHHSSGLVPRGSHMDPNQNVKC---KIVVVGDSQCGKTALLHVFAKDCFPENYVP 59

Query: 61 TI 62
          T+
Sbjct: 60 TV 61

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} Length = 201

 Score = 42.8 bits (101), Expect = 1e-06
 Identities = 13/40 (32%), Positives = 20/40 (50%)

Query: 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
            A+    K VL+G+ AVGK+SLV+ +    +      T 
Sbjct: 14 GGAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTA 53

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} Length = 214

 Score = 42.4 bits (100), Expect = 1e-06
 Identities = 13/49 (26%), Positives = 23/49 (46%)

Query: 17 QRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
              ++    +   K+VL+G+   GK+SL++ F  G F E    T+   
Sbjct: 22 SMAGEEAPPGVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFER 70

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* Length = 184

 Score = 42.0 bits (99), Expect = 2e-06
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          + K+V++G+S  GK++L+  F +  F E    T+
Sbjct: 7  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 40

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... Length = 201

 Score = 41.7 bits (98), Expect = 3e-06
 Identities = 19/62 (30%), Positives = 33/62 (53%), Gaps = 4/62 (6%)

Query: 1  MANSNNSNSNGRGGRIQRPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES 60
          M +S++ + +  G     P     A I + KLV++G+ A GK+ L++ F + QF E    
Sbjct: 1  MGSSHHHHHHSSG---LVPRGSHMAAI-RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVP 56

Query: 61 TI 62
          T+
Sbjct: 57 TV 58

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C Length = 182

 Score = 40.8 bits (96), Expect = 5e-06
 Identities = 10/41 (24%), Positives = 19/41 (46%)

Query: 23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          + +     K V +G+ AVGK+ L++ +    F      T+ 
Sbjct: 2  SMSASRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVF 42

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} Length = 212

 Score = 40.0 bits (94), Expect = 1e-05
 Identities = 9/33 (27%), Positives = 18/33 (54%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
           K V +G+ AVGK+ +++ +   +F      T+
Sbjct: 10 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTV 42

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} Length = 204

 Score = 39.8 bits (93), Expect = 1e-05
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 3/64 (4%)

Query: 1  MANSNNSNSNGRGGRIQRPN--DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQ 58
          M +S++ + +   G + R +  +    +    K V++G+ AVGK+ L++ +    F    
Sbjct: 1  MGSSHHHHHHS-SGLVPRGSHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEY 59

Query: 59 ESTI 62
            T+
Sbjct: 60 IPTV 63

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... Length = 186

 Score = 38.6 bits (90), Expect = 4e-05
 Identities = 10/32 (31%), Positives = 18/32 (56%)

Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          K V++G+ AVGK+ L++ +    F      T+
Sbjct: 7  KCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 38

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	76
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.32
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.12
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.08
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.07
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.06
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.04
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.03
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.02
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.0
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.0
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	98.99
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	98.98
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	98.94
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	98.93
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	98.92
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	98.92
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	98.92
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	98.91
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	98.91
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	98.91
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	98.91
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	98.91
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	98.91
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	98.91
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	98.91
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	98.89
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	98.89
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	98.88
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	98.87
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	98.87
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	98.86
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	98.86
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	98.86
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	98.86
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	98.86
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	98.85
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	98.85
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	98.85
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	98.85
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	98.84
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	98.84
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	98.83
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	98.83
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	98.82
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	98.82
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	98.82
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	98.82
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	98.82
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	98.82
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	98.81
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	98.81
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	98.81
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	98.81
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	98.8
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	98.8
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	98.79
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	98.78
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	98.78
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	98.76
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	98.75
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	98.75
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	98.75
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	98.74
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	98.73
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	98.73
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	98.73
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	98.73
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	98.72
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	98.72
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	98.72
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	98.72
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	98.7
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	98.7
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	98.7
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	98.7
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	98.7
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	98.67
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	98.66
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	98.66
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	98.64
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	98.64
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	98.63
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	98.62
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	98.6
3llu_A	196	RAS-related GTP-binding protein C; structural geno	98.6
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	98.6
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	98.55
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	98.55
2fh5_B	214	SR-beta, signal recognition particle receptor beta	98.54
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	98.53
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	98.53
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	98.52
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	97.92
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	98.51
2wji_A	165	Ferrous iron transport protein B homolog; membrane	98.45
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	98.45
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	98.44
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	98.43
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	98.42
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	98.4
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	98.4
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	98.39
2hf9_A	226	Probable hydrogenase nickel incorporation protein	98.38
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	98.38
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	98.36
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	98.36
1nrj_B	218	SR-beta, signal recognition particle receptor beta	98.36
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	98.36
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	98.34
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	98.33
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	98.32
2ged_A	193	SR-beta, signal recognition particle receptor beta	98.32
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	98.3
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	98.28
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	98.27
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	98.21
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	98.18
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	98.16
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	98.15
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	98.12
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	98.08
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	98.04
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	98.03
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	97.95
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	97.91
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	97.88
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	97.88
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	97.87
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	97.87
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.87
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	97.85
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	97.75
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	97.75
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	97.75
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	97.74
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	97.74
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	97.71
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	97.7
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	97.7
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.69
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.68
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	97.67
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.66
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	97.66
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	97.65
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	97.65
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	97.64
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	97.64
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	97.64
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	97.64
1ji0_A	240	ABC transporter; ATP binding protein, structural g	97.63
1g6h_A	257	High-affinity branched-chain amino acid transport	97.62
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	97.62
1b0u_A	262	Histidine permease; ABC transporter, transport pro	97.62
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.61
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	97.61
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	97.6
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	97.59
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	97.58
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	97.58
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	97.57
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	97.56
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	97.52
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.49
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	97.48
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	97.47
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	97.47
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	97.46
2ghi_A	260	Transport protein; multidrug resistance protein, M	97.43
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	97.42
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	97.41
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	97.39
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	97.39
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	97.38
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	97.37
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.36
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	97.36
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.35
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	97.34
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	97.33
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	97.33
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	97.31
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	97.28
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.28
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.28
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	97.27
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.26
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.26
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	97.23
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	97.21
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	97.21
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	97.2
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	97.19
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.19
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	97.18
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	97.15
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	97.14
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.14
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	97.13
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	97.13
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.12
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.12
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	97.12
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.12
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	97.12
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.12
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	97.11
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	97.11
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	97.11
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.1
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	97.08
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.07
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	97.06
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.05
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	97.03
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	97.01
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	97.01
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	96.97
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.94
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	96.92
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	96.91
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	96.9
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	96.89
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	96.88
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.84
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	96.84
1wxq_A	397	GTP-binding protein; structural genomics, riken st	96.81
3g5u_A	1284	MCG1178, multidrug resistance protein 1A; P-glycop	96.81
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.8
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.8
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.79
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	96.79
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	96.77
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.76
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	96.75
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	96.75
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	96.74
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	96.74
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	96.74
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	96.72
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.71
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.7
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	96.67
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.67
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.67
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.66
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.66
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.64
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	96.61
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.6
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	96.6
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.59
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.59
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	96.59
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.59
1wb1_A	482	Translation elongation factor SELB; selenocysteine	96.59
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	96.58
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	96.58
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	96.58
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.57
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.57
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.56
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.54
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.52
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.5
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	96.5
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.49
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	96.48
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.47
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.47
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.47
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.47
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.45
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.45
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	96.44
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.43
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.43
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.41
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	96.41
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.4
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.4
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	96.37
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	96.36
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.35
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.35
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	96.35
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.34
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.34
3bos_A	242	Putative DNA replication factor; P-loop containing	96.33
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.32
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	96.3
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	96.29
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.27
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.26
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	96.26
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.25
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.24
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.23
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.23
2chg_A	226	Replication factor C small subunit; DNA-binding pr	96.23
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.22
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.22
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.19
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	96.19
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	96.18
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.17
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.17
1via_A	175	Shikimate kinase; structural genomics, transferase	96.17
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	96.15
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	96.15
2qen_A	350	Walker-type ATPase; unknown function; HET: ADP; 2.	96.12
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	96.11
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.11
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.11
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	96.11
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.11
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.1
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.09
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.09
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.09
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	96.09
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.08
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	96.08
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.07
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	96.06
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.06
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	96.05
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.05
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.02
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.02
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.02
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.01
2fna_A	357	Conserved hypothetical protein; structural genomic	96.01
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.01
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	96.0
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	96.0
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	95.99
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	95.98
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	95.98
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	95.98
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	95.98
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	95.96
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	95.96
3kta_A	182	Chromosome segregation protein SMC; structural mai	95.95
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	95.95
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.94
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	95.94
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	95.93
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	95.93
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	95.92
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	95.92
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	95.91
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	95.91
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	95.9
3lda_A	400	DNA repair protein RAD51; DNA binding protein, ATP	95.89
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	95.87
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	95.86
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.85
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	95.85
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	95.83
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.82
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	95.82
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.81
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	95.81
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	95.81
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.8
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	95.79
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	95.78
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	95.75
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	95.75
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	95.74
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	95.74
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	95.73
2ewv_A	372	Twitching motility protein PILT; pilus retraction	95.73
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	95.72
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	95.72
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	95.71
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	95.7
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.7
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	95.7
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	95.7
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	95.69
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	95.69
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	95.69
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	95.69
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	95.69
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	95.67
2og2_A	359	Putative signal recognition particle receptor; nuc	95.67
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	95.66
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	95.64
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.63
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.62
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	95.62
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	95.61
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.61
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.61
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	95.59
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	95.59
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	95.57
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.55
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	95.53
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.53
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	95.53
2vli_A	183	Antibiotic resistance protein; transferase, tunica	95.52
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	95.52
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	95.5
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	95.45
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.44
1p5z_B	263	DCK, deoxycytidine kinase; nucleoside kinase, P-lo	95.37
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	95.37
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	95.36
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	95.36
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.35
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.34
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.34
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.34
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	95.33
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	95.33
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	95.31
2r8r_A	228	Sensor protein; KDPD, PFAM02702, MCSG, structural	95.3
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	95.3
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.29
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	95.29
1p9r_A	418	General secretion pathway protein E; bacterial typ	95.27
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	95.26
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	95.26
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.24
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	95.24
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	95.23
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.21
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.2
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.2
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.18
1hqc_A	324	RUVB; extended AAA-ATPase domain, complex with nuc	95.17
3co5_A	143	Putative two-component system transcriptional RES	95.14
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	95.09
1um8_A	376	ATP-dependent CLP protease ATP-binding subunit CL;	95.09
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	95.09
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.07
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	95.06
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	95.05
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	95.03
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.03
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.03
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	95.0
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	95.0
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	94.99
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	94.96
2zts_A	251	Putative uncharacterized protein PH0186; KAIC like	94.95
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	94.94
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	94.93
1z6t_A	591	APAF-1, apoptotic protease activating factor 1; ca	94.91
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	94.9
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	94.9
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	94.87
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	94.86
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	94.84
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	94.84
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	94.84
2qgz_A	308	Helicase loader, putative primosome component; str	94.84
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	94.83
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	94.83
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	94.79
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	94.78
2a5y_B	549	CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis	94.78
2qp9_X	355	Vacuolar protein sorting-associated protein 4; ATP	94.78
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	94.75
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	94.74
3pvs_A	447	Replication-associated recombination protein A; ma	94.73
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	94.71
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	94.7
1jr3_A	373	DNA polymerase III subunit gamma; processivity, pr	94.67
1ojl_A	304	Transcriptional regulatory protein ZRAR; response	94.67
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	94.66
3ux8_A	670	Excinuclease ABC, A subunit; UVRA, nucleotide exci	94.65
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	94.64
3m6a_A	543	ATP-dependent protease LA 1; alpha, beta, ATP-bind	94.62
3hws_A	363	ATP-dependent CLP protease ATP-binding subunit CL;	94.62
2r44_A	331	Uncharacterized protein; putative ATPase, structur	94.6
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	94.57
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	94.56
1tf7_A	525	KAIC; homohexamer, hexamer, circadian clock protei	94.53
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.5
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	94.5
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	94.45
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	94.44
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	94.39
1sxj_B	323	Activator 1 37 kDa subunit; clamp loader, processi	94.36
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	94.33
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	94.32
2chq_A	319	Replication factor C small subunit; DNA-binding pr	94.31
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	94.29
3hr8_A	356	Protein RECA; alpha and beta proteins (A/B, A+B),	94.22
1ko7_A	314	HPR kinase/phosphatase; protein kinase, phosphotra	94.22
3k1j_A	604	LON protease, ATP-dependent protease LON; ATP-bind	94.16
3bh0_A	315	DNAB-like replicative helicase; ATPase, replicatio	94.16
1e69_A	322	Chromosome segregation SMC protein; structural mai	94.14
2zan_A	444	Vacuolar protein sorting-associating protein 4B; S	94.1
3eph_A	409	TRNA isopentenyltransferase; transferase, alternat	94.1
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	94.1

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.32  E-value=5.1e-13  Score=85.61  Aligned_cols=45  Identities=38%  Similarity=0.528  Sum_probs=29.2

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCC
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPG   70 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~   70 (76)
                      +...|||+|||+++||||||+.||+.+.|.+.|.+|+|.++..+.
T Consensus        10 P~k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~   54 (216)
T 4dkx_A           10 PLRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKT   54 (216)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEE
T ss_pred             CCCcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEE
Confidence            345799999999999999999999999999999999998875543

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.12  E-value=2.2e-11  Score=75.93  Aligned_cols=48  Identities=42%  Similarity=0.567  Sum_probs=29.8

Q ss_pred             CccccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          21 DQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        21 ~~~~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      .+....+..+||+++|+.+||||||+++|+.+.|...+.+|++.++..
T Consensus        21 ~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~   68 (201)
T 2hup_A           21 DPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTM   68 (201)
T ss_dssp             -----CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEE
T ss_pred             CcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEE
Confidence            334566778999999999999999999999999998889998876643

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.08  E-value=9.5e-11  Score=71.91  Aligned_cols=45  Identities=38%  Similarity=0.550  Sum_probs=39.8

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ..++..+||+++|+.+||||||+++++.+.|...+.+|++.++..
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~   64 (193)
T 2oil_A           20 EDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFST   64 (193)
T ss_dssp             CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEE
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEE
Confidence            456778999999999999999999999999998888998877654

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.07  E-value=8.2e-11  Score=72.31  Aligned_cols=44  Identities=30%  Similarity=0.507  Sum_probs=33.5

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ......+||+++|+.+||||||+++++.+.|...+.+|++.++.
T Consensus        16 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~   59 (191)
T 2a5j_A           16 PRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG   59 (191)
T ss_dssp             CTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEE
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeE
Confidence            34566899999999999999999999999998888888775554

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.06  E-value=1.2e-10  Score=71.30  Aligned_cols=45  Identities=33%  Similarity=0.492  Sum_probs=39.0

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ...++.+||+++|+.+||||||+++++.+.|...+.+|++.++..
T Consensus        17 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~   61 (189)
T 2gf9_A           17 RGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKV   61 (189)
T ss_dssp             TTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEE
T ss_pred             cccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEE
Confidence            345678999999999999999999999999988888888876643

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.04  E-value=2.6e-10  Score=70.16  Aligned_cols=44  Identities=20%  Similarity=0.342  Sum_probs=36.8

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ......+||+++|+.+||||||+++|+.+.|...|.+|++.++.
T Consensus        16 ~~~~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~   59 (187)
T 3c5c_A           16 FQGPLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYS   59 (187)
T ss_dssp             ----CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE
T ss_pred             hCCCceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceee
Confidence            34456899999999999999999999999999999999987753

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.03  E-value=1.8e-10  Score=71.31  Aligned_cols=44  Identities=41%  Similarity=0.541  Sum_probs=38.0

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ...+..+|++++|++|||||||+++++...|...+.+|++.++.
T Consensus        24 ~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~   67 (191)
T 1oix_A           24 DEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFA   67 (191)
T ss_dssp             CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEE
Confidence            34567899999999999999999999999999888898876543

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.02  E-value=1.1e-10  Score=71.95  Aligned_cols=47  Identities=28%  Similarity=0.431  Sum_probs=32.1

Q ss_pred             cccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355          23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP   69 (76)
Q Consensus        23 ~~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~   69 (76)
                      +...+..+||+++|+.++|||||+++++.+.|...+.+|++.++...
T Consensus        20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~   66 (192)
T 2il1_A           20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIK   66 (192)
T ss_dssp             --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEE
T ss_pred             CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEE
Confidence            34567789999999999999999999999999888888888776543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.00  E-value=2.4e-10  Score=71.59  Aligned_cols=45  Identities=38%  Similarity=0.507  Sum_probs=39.5

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ..++..+||+++|+++||||||+++|+.+.|...+.+|++.++..
T Consensus        21 ~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~   65 (201)
T 2ew1_A           21 EDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMI   65 (201)
T ss_dssp             -CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEE
T ss_pred             cccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEE
Confidence            356778999999999999999999999999998899999877654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.00  E-value=4.3e-10  Score=70.52  Aligned_cols=44  Identities=25%  Similarity=0.339  Sum_probs=37.2

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ......+||+++|+.+||||||+++|+.+.|...|.+|++.++.
T Consensus        23 ~~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~   66 (205)
T 1gwn_A           23 PNQNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT   66 (205)
T ss_dssp             ----CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred             cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEE
Confidence            34567899999999999999999999999999999999987764

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=98.99  E-value=5.6e-10  Score=68.72  Aligned_cols=38  Identities=24%  Similarity=0.365  Sum_probs=34.2

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCce
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI   62 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~ti   62 (76)
                      .....+||+++|+++||||||+++|+.+.|...+.+|.
T Consensus        16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~   53 (184)
T 3ihw_A           16 FQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEG   53 (184)
T ss_dssp             CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTC
T ss_pred             CCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCc
Confidence            44568999999999999999999999999999888884

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.98  E-value=4.3e-11  Score=73.60  Aligned_cols=46  Identities=30%  Similarity=0.423  Sum_probs=39.4

Q ss_pred             cccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        23 ~~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ...+++.+||+++|+.+||||||+++|+.+.|...+.+|++.++..
T Consensus        17 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~   62 (191)
T 3dz8_A           17 QGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKV   62 (191)
T ss_dssp             TTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEE
T ss_pred             ccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEE
Confidence            3567889999999999999999999999999988888888755543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=98.94  E-value=8.9e-10  Score=67.58  Aligned_cols=41  Identities=29%  Similarity=0.321  Sum_probs=36.9

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ...+||+++|+.+||||||+++++.+.|...+.+|++.++.
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~   60 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR   60 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEE
Confidence            45799999999999999999999999999888999987764

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=98.93  E-value=1.3e-09  Score=66.93  Aligned_cols=45  Identities=27%  Similarity=0.351  Sum_probs=38.1

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ......+||+++|+.+||||||+++|+.+.|...+.+|++.++..
T Consensus        18 ~~~~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~   62 (194)
T 3reg_A           18 ENGKKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSH   62 (194)
T ss_dssp             ---CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE
T ss_pred             cccceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEE
Confidence            345568999999999999999999999999999999999887653

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=98.92  E-value=4.8e-10  Score=69.95  Aligned_cols=45  Identities=27%  Similarity=0.332  Sum_probs=39.4

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ..++..+||+++|+.+||||||+++|+.+.|...+.+|++.++..
T Consensus        20 ~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~   64 (217)
T 2f7s_A           20 GDYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFRE   64 (217)
T ss_dssp             -CCSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEE
T ss_pred             CCcceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEE
Confidence            456778999999999999999999999999988888999877654

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=98.92  E-value=6.7e-10  Score=68.79  Aligned_cols=39  Identities=46%  Similarity=0.667  Sum_probs=31.9

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC   65 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~   65 (76)
                      ++.+|++++|++|||||||+++++...|...+.+|++.+
T Consensus         3 ~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~   41 (199)
T 2f9l_A            3 DYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE   41 (199)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccee
Confidence            467999999999999999999999999988888887643

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=98.92  E-value=1.4e-09  Score=68.34  Aligned_cols=44  Identities=23%  Similarity=0.328  Sum_probs=36.9

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ......+||+++|+.+||||||+++|+.+.|...|.+|++.++.
T Consensus        22 ~~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~   65 (214)
T 3q3j_B           22 QPVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYT   65 (214)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred             CCccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEE
Confidence            34456899999999999999999999999999999999988875

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=98.91  E-value=1e-09  Score=67.01  Aligned_cols=45  Identities=40%  Similarity=0.523  Sum_probs=39.2

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP   69 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~   69 (76)
                      .....+||+++|+.++|||||+++++.+.|...+.++++.++...
T Consensus        12 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~   56 (196)
T 3tkl_A           12 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIR   56 (196)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEE
T ss_pred             ccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEE
Confidence            446789999999999999999999999999998989888776543

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=98.91  E-value=1e-09  Score=66.74  Aligned_cols=46  Identities=50%  Similarity=0.647  Sum_probs=39.8

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCc
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGR   71 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~   71 (76)
                      ....+||+++|+.++|||||+++++.+.|...+.+|++.++.....
T Consensus         4 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~   49 (208)
T 3clv_A            4 KKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVV   49 (208)
T ss_dssp             CCSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEE
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEE
Confidence            3467999999999999999999999999999999999887765433

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=98.91  E-value=9.9e-10  Score=67.25  Aligned_cols=44  Identities=16%  Similarity=0.178  Sum_probs=33.0

Q ss_pred             cccccceeeEEEECCCCCcchhhhhhhhhCcCCC-cCCCceeEEE
Q psy1355          23 TQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHE-YQESTIGGCG   66 (76)
Q Consensus        23 ~~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~-~~~~tig~~~   66 (76)
                      +......+||+|+|+.+||||||+++|+.+.|.. .|.+|++..+
T Consensus        11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~   55 (199)
T 4bas_A           11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNV   55 (199)
T ss_dssp             -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEE
T ss_pred             ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeE
Confidence            3456678999999999999999999999999998 8899988554

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=98.91  E-value=6.9e-10  Score=67.91  Aligned_cols=43  Identities=35%  Similarity=0.590  Sum_probs=36.5

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ....+||+++|+.+||||||+++|+.+.|...+.+|++.++..
T Consensus        17 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~   59 (189)
T 1z06_A           17 RSRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRE   59 (189)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEE
Confidence            3457999999999999999999999999998888888766543

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=98.91  E-value=1.2e-09  Score=66.21  Aligned_cols=45  Identities=24%  Similarity=0.411  Sum_probs=39.3

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP   69 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~   69 (76)
                      ..+..+||+++|+.+||||||+++++.+.|...+.+|++.++...
T Consensus         6 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~   50 (186)
T 2bme_A            6 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSK   50 (186)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEE
T ss_pred             ccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEE
Confidence            356789999999999999999999999999988899988776543

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=98.91  E-value=1.4e-09  Score=65.91  Aligned_cols=43  Identities=28%  Similarity=0.387  Sum_probs=38.8

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      .++..+||+++|+.+||||||+++++.+.|...+.+|++.++.
T Consensus         7 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~   49 (195)
T 3bc1_A            7 DYDYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFR   49 (195)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred             ccceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeee
Confidence            4567899999999999999999999999999888999988765

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=98.91  E-value=1.1e-09  Score=65.27  Aligned_cols=42  Identities=40%  Similarity=0.696  Sum_probs=36.8

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      .+..+||+++|+.++|||||+++++.+.|...+.+|++.++.
T Consensus         3 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~   44 (170)
T 1z08_A            3 RAYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFL   44 (170)
T ss_dssp             -CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEE
Confidence            456899999999999999999999999998888888886654

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=98.91  E-value=1.5e-10  Score=71.65  Aligned_cols=43  Identities=42%  Similarity=0.530  Sum_probs=36.4

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ..+..+||+++|+.+||||||+++++.+.|...+.++++.++.
T Consensus        29 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~   71 (199)
T 3l0i_B           29 EYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFK   71 (199)
T ss_dssp             CCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEE
Confidence            3467899999999999999999999999988887777765544

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=98.89  E-value=1.5e-09  Score=67.14  Aligned_cols=42  Identities=36%  Similarity=0.502  Sum_probs=36.3

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      .....+||+++|+.+||||||+++|+.+.|...|.+|++..+
T Consensus        20 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   61 (201)
T 3oes_A           20 PLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY   61 (201)
T ss_dssp             ---CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE
T ss_pred             CCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE
Confidence            345689999999999999999999999999999999988765

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=98.89  E-value=1.4e-09  Score=66.88  Aligned_cols=46  Identities=39%  Similarity=0.569  Sum_probs=38.5

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP   69 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~   69 (76)
                      ..++..+||+++|+.++|||||+++++.+.|...+.+|++.++...
T Consensus        18 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~   63 (192)
T 2fg5_A           18 GSAIRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTK   63 (192)
T ss_dssp             ---CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEE
T ss_pred             cccCCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEE
Confidence            4567789999999999999999999999999888899998776543

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=98.88  E-value=1.2e-09  Score=65.49  Aligned_cols=44  Identities=27%  Similarity=0.362  Sum_probs=37.5

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ...+..+||+++|+.++|||||+++++.+.|...+.+|++.++.
T Consensus        10 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~   53 (179)
T 1z0f_A           10 YNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFG   53 (179)
T ss_dssp             -CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEE
T ss_pred             cccccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEE
Confidence            34567899999999999999999999999998888888876543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=98.87  E-value=1e-09  Score=65.21  Aligned_cols=41  Identities=37%  Similarity=0.504  Sum_probs=35.7

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ...+||+++|+.++|||||+++++.+.|...+.+|++.++.
T Consensus         3 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~   43 (168)
T 1z2a_A            3 EVAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFL   43 (168)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEE
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEE
Confidence            45799999999999999999999999999888888876553

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=98.87  E-value=2e-09  Score=66.34  Aligned_cols=45  Identities=29%  Similarity=0.425  Sum_probs=39.0

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP   69 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~   69 (76)
                      .+++.+||+++|+.+||||||+++++.+.|...+.+|++.++...
T Consensus         4 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~   48 (203)
T 1zbd_A            4 MFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVK   48 (203)
T ss_dssp             SCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEE
T ss_pred             ccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEE
Confidence            345689999999999999999999999999988889988776543

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=98.86  E-value=1.7e-09  Score=64.98  Aligned_cols=45  Identities=38%  Similarity=0.501  Sum_probs=35.9

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP   69 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~   69 (76)
                      ..+..+||+++|+.++|||||+++++.+.+...+.++++.++...
T Consensus         5 ~~~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~   49 (181)
T 3tw8_B            5 DYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIR   49 (181)
T ss_dssp             -CCEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEE
T ss_pred             ccCcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEE
Confidence            456789999999999999999999999999888889888776543

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=98.86  E-value=4.4e-10  Score=68.14  Aligned_cols=43  Identities=35%  Similarity=0.495  Sum_probs=22.6

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      .++.+||+++|+.+||||||+++|+.+.|...+.+|++.++..
T Consensus         5 ~~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~   47 (183)
T 2fu5_C            5 YDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKI   47 (183)
T ss_dssp             CSEEEEEEEECCCCC----------------CHHHHHCEEEEE
T ss_pred             cCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEE
Confidence            4578999999999999999999999999988888888877653

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=98.86  E-value=2.5e-09  Score=66.64  Aligned_cols=49  Identities=20%  Similarity=0.209  Sum_probs=34.0

Q ss_pred             CCCCccccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          18 RPNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        18 ~~~~~~~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ..+.........+||+++|+.+||||||+.+|+.+.|...+.+|++..+
T Consensus        19 ~~m~~~~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~   67 (204)
T 4gzl_A           19 SHMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY   67 (204)
T ss_dssp             -----------CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEE
T ss_pred             hHHHhHhhcCCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeeccee
Confidence            3333334456689999999999999999999999999988988886654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=98.86  E-value=2.1e-09  Score=63.86  Aligned_cols=42  Identities=81%  Similarity=1.180  Sum_probs=37.2

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ...+||+++|+.++|||||+++++.+.|...+.++++.++..
T Consensus         4 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~   45 (170)
T 1r2q_A            4 ICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLT   45 (170)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEE
Confidence            457999999999999999999999999998888888877644

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=98.86  E-value=2.3e-09  Score=63.78  Aligned_cols=43  Identities=37%  Similarity=0.578  Sum_probs=37.7

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ....+||+++|+.++|||||+++++.+.|...+.+|++.++..
T Consensus         3 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~   45 (170)
T 1z0j_A            3 ALRELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMT   45 (170)
T ss_dssp             SEEEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEE
T ss_pred             CCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEE
Confidence            3457999999999999999999999999988889998877654

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=98.85  E-value=3.3e-09  Score=64.69  Aligned_cols=42  Identities=26%  Similarity=0.358  Sum_probs=36.7

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ....+||+++|+.+||||||+++|+.+.|...|.+|++.++.
T Consensus         4 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~   45 (184)
T 1m7b_A            4 QNVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT   45 (184)
T ss_dssp             --CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred             CceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEE
Confidence            356799999999999999999999999999999999987764

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=98.85  E-value=1.6e-09  Score=65.30  Aligned_cols=44  Identities=59%  Similarity=0.752  Sum_probs=36.3

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ......+||+++|+.++|||||+++++.+.+...+.+|++.++.
T Consensus         7 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~   50 (181)
T 2efe_B            7 GNKSINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFF   50 (181)
T ss_dssp             ---CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEE
T ss_pred             CCCccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEE
Confidence            34556899999999999999999999999999888888876554

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=98.85  E-value=1.4e-09  Score=64.70  Aligned_cols=41  Identities=39%  Similarity=0.577  Sum_probs=30.1

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ..+||+++|+.++|||||+++++.+.|...+.+|++.++..
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~   42 (170)
T 1g16_A            2 SIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI   42 (170)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEE
T ss_pred             CceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEE
Confidence            46899999999999999999999999988888888766543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=98.85  E-value=2.1e-09  Score=64.61  Aligned_cols=42  Identities=40%  Similarity=0.516  Sum_probs=33.7

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ....+||+++|+.++|||||+++++.+.|...+.+|++.++.
T Consensus         4 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~   45 (177)
T 1wms_A            4 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFL   45 (177)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEE
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEE
Confidence            445799999999999999999999999999888899887764

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=98.84  E-value=1.5e-09  Score=67.23  Aligned_cols=42  Identities=40%  Similarity=0.491  Sum_probs=37.5

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ++..+||+++|+.++|||||+++++.+.|...+.+|++.++.
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~   46 (206)
T 2bcg_Y            5 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFK   46 (206)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEE
T ss_pred             cCcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeE
Confidence            466899999999999999999999999999888898876654

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=98.84  E-value=8.8e-10  Score=68.40  Aligned_cols=45  Identities=24%  Similarity=0.385  Sum_probs=27.2

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ..++..+||+++|+.+||||||+++++.+.|...+.+|++.++..
T Consensus        20 ~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~   64 (200)
T 2o52_A           20 IWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGS   64 (200)
T ss_dssp             --CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEE
T ss_pred             cccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEE
Confidence            446778999999999999999999999999988888888766543

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=98.83  E-value=2.3e-09  Score=66.04  Aligned_cols=43  Identities=30%  Similarity=0.264  Sum_probs=27.6

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ......+||+++|+.+||||||+++|+.+.|...|.+|++..+
T Consensus        15 ~~~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~   57 (201)
T 2q3h_A           15 GAEGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNF   57 (201)
T ss_dssp             -----CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEE
T ss_pred             CCCCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccccee
Confidence            3456689999999999999999999999999988989887654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.83  E-value=3e-09  Score=63.14  Aligned_cols=41  Identities=59%  Similarity=0.773  Sum_probs=36.1

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ..+||+++|+.++|||||+++++.+.|...+.+|++.++..
T Consensus         2 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~   42 (170)
T 1ek0_A            2 TSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLT   42 (170)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEE
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEE
Confidence            36899999999999999999999999998888988876543

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=98.82  E-value=2e-09  Score=65.95  Aligned_cols=40  Identities=23%  Similarity=0.358  Sum_probs=26.8

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhC--cCCCcCCCceeEEEEe
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRG--QFHEYQESTIGGCGNV   68 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~--~f~~~~~~tig~~~~~   68 (76)
                      .+|++++|++|||||||+++|+..  .|...+.+|+|.++..
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~   43 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKD   43 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEE
Confidence            589999999999999999999974  5777788999888653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=98.82  E-value=3.8e-09  Score=65.45  Aligned_cols=41  Identities=32%  Similarity=0.431  Sum_probs=36.0

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ....+||+++|+.+||||||+++|+.+.|...|.+|++.++
T Consensus        22 ~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   62 (201)
T 2gco_A           22 AAIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENY   62 (201)
T ss_dssp             CCEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCC
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceE
Confidence            34689999999999999999999999999988888876554

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=98.82  E-value=1.5e-09  Score=67.11  Aligned_cols=43  Identities=37%  Similarity=0.581  Sum_probs=27.1

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      .....+||+++|+.+||||||+++++.+.|...+.+|++.++.
T Consensus        24 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~   66 (199)
T 2p5s_A           24 SSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQ   66 (199)
T ss_dssp             ----CEEEEEESSTTSSHHHHHHHHHHCCCC----------CE
T ss_pred             CcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeE
Confidence            4456799999999999999999999999998888888876654

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=98.82  E-value=4.1e-09  Score=64.91  Aligned_cols=44  Identities=34%  Similarity=0.492  Sum_probs=37.5

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP   69 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~   69 (76)
                      ....+||+++|+.++|||||+++++.+.|...+.+|++.++...
T Consensus         5 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~   48 (207)
T 1vg8_A            5 KKVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK   48 (207)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE
T ss_pred             cCcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEE
Confidence            45689999999999999999999999999998999988776543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=98.82  E-value=3.2e-09  Score=63.63  Aligned_cols=42  Identities=40%  Similarity=0.584  Sum_probs=37.1

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ...+||+++|+.++|||||+++++.+.|...+.+|++.++..
T Consensus        12 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~   53 (179)
T 2y8e_A           12 LRKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLS   53 (179)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEE
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEE
Confidence            346999999999999999999999999998889998877643

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.82  E-value=3.5e-09  Score=64.85  Aligned_cols=42  Identities=26%  Similarity=0.351  Sum_probs=36.8

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      .....+||+++|+.+||||||+++|+.+.|...|.+|++..+
T Consensus        14 ~~~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~   55 (194)
T 2atx_A           14 PGALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHY   55 (194)
T ss_dssp             CEEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCE
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccee
Confidence            345689999999999999999999999999998999886554

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=98.81  E-value=4.5e-10  Score=67.60  Aligned_cols=41  Identities=37%  Similarity=0.433  Sum_probs=35.1

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ...+||+++|+.+||||||+++++.+.|...+.+|++.++.
T Consensus         4 ~~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~   44 (178)
T 2hxs_A            4 MRQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFF   44 (178)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEE
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEE
Confidence            35799999999999999999999999988878888875543

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=98.81  E-value=3.9e-09  Score=64.27  Aligned_cols=44  Identities=41%  Similarity=0.565  Sum_probs=38.2

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP   69 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~   69 (76)
                      ....+||+++|+.+||||||+++++.+.|...+.+|++.++...
T Consensus        12 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~   55 (195)
T 1x3s_A           12 VLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK   55 (195)
T ss_dssp             EEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEE
Confidence            34579999999999999999999999999988999988776543

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=98.81  E-value=5.7e-09  Score=62.89  Aligned_cols=41  Identities=32%  Similarity=0.487  Sum_probs=35.4

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ....+||+++|+.++|||||+++++.+.|...|.+|++..+
T Consensus        15 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   55 (187)
T 2a9k_A           15 SLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY   55 (187)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEE
Confidence            34579999999999999999999999999988888887665

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=98.81  E-value=2.1e-09  Score=67.68  Aligned_cols=44  Identities=39%  Similarity=0.522  Sum_probs=32.5

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      .++..+||+|+|+.+||||||+++|+.+.|...+.+|++.++..
T Consensus         9 ~~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~   52 (223)
T 3cpj_B            9 DYDLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFAT   52 (223)
T ss_dssp             -CCEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEE
T ss_pred             CCCeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEE
Confidence            34678999999999999999999999999998888888766543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=98.80  E-value=7.3e-09  Score=61.41  Aligned_cols=39  Identities=46%  Similarity=0.719  Sum_probs=35.6

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      .+||+++|+.++|||||+++++.+.|...+.+|++..+.
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~   41 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR   41 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE
Confidence            589999999999999999999999999999999887664

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=98.80  E-value=5.5e-09  Score=63.25  Aligned_cols=42  Identities=33%  Similarity=0.566  Sum_probs=37.4

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      .....+||+++|+.++|||||+++|+.+.|...+.+|++..+
T Consensus        14 ~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~   55 (183)
T 3kkq_A           14 ENLPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY   55 (183)
T ss_dssp             CCCCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee
Confidence            345689999999999999999999999999999999987665

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=98.79  E-value=6.8e-09  Score=62.28  Aligned_cols=41  Identities=32%  Similarity=0.450  Sum_probs=36.5

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ...+||+++|+.++|||||+++++.+.|...+.+|++.++.
T Consensus         7 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~   47 (181)
T 2fn4_A            7 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT   47 (181)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE
Confidence            35799999999999999999999999999999999877653

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=98.78  E-value=3.5e-09  Score=63.87  Aligned_cols=38  Identities=34%  Similarity=0.489  Sum_probs=33.4

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ..+||+++|+.+||||||+++|+.+.|.. +.+|++..+
T Consensus         6 ~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~   43 (178)
T 2iwr_A            6 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY   43 (178)
T ss_dssp             CEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeE
Confidence            47999999999999999999999999987 778876554

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=98.78  E-value=2.7e-09  Score=64.13  Aligned_cols=43  Identities=35%  Similarity=0.525  Sum_probs=33.4

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ....+||+++|+.++|||||+++++.+.|...+.+|++.++..
T Consensus         5 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~   47 (182)
T 1ky3_A            5 KKNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLT   47 (182)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEE
T ss_pred             cCceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEE
Confidence            3457999999999999999999999999998888888765443

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.76  E-value=6.2e-09  Score=62.64  Aligned_cols=43  Identities=35%  Similarity=0.454  Sum_probs=36.4

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCC-CcCCCceeEEEE
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFH-EYQESTIGGCGN   67 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~-~~~~~tig~~~~   67 (76)
                      .+...+||+++|+.++|||||+++++.+.|. ..+.+|++.++.
T Consensus         6 ~~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~   49 (180)
T 2g6b_A            6 FYDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFR   49 (180)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEE
T ss_pred             cCCcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEE
Confidence            4466899999999999999999999999885 467788877654

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.75  E-value=1e-08  Score=63.01  Aligned_cols=42  Identities=33%  Similarity=0.497  Sum_probs=36.4

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ....+||+++|+.+||||||+++++.+.|...|.+|++.++.
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~   66 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYR   66 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEE
Confidence            345799999999999999999999999999999999877653

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.75  E-value=4.9e-09  Score=64.81  Aligned_cols=44  Identities=36%  Similarity=0.502  Sum_probs=35.5

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      .....+||+++|+.+||||||+.+++.+.|...+.+|++.++..
T Consensus        16 ~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~   59 (213)
T 3cph_A           16 SYDSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKI   59 (213)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEE
T ss_pred             CCCcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEE
Confidence            34567999999999999999999999999988888888766543

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=98.75  E-value=8.6e-09  Score=62.27  Aligned_cols=39  Identities=41%  Similarity=0.572  Sum_probs=35.6

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ..+||+++|+.++|||||+++|+.+.|...+.+|++..+
T Consensus         5 ~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   43 (181)
T 3t5g_A            5 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF   43 (181)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE
Confidence            478999999999999999999999999999999987665

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=98.74  E-value=7.9e-09  Score=64.15  Aligned_cols=41  Identities=22%  Similarity=0.246  Sum_probs=36.2

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ...+||+++|+.++|||||+.+|+.+.|...|.+|++..+.
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~   47 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFS   47 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEE
Confidence            35799999999999999999999999999889999876553

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=98.73  E-value=6.8e-09  Score=63.48  Aligned_cols=41  Identities=17%  Similarity=0.198  Sum_probs=32.7

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCc-CCCcCCCceeEE
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQ-FHEYQESTIGGC   65 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~-f~~~~~~tig~~   65 (76)
                      .....+||+++|+.+||||||+++++.+. |...+.+|++..
T Consensus        17 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~   58 (190)
T 2h57_A           17 RGSKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS   58 (190)
T ss_dssp             ----CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE
T ss_pred             CCCCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee
Confidence            44557999999999999999999999887 677788888644

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=98.73  E-value=1.4e-08  Score=60.26  Aligned_cols=39  Identities=44%  Similarity=0.718  Sum_probs=34.6

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      .+||+++|+.++|||||+++++.+.|...+.+|++..+.
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~   41 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYR   41 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEE
Confidence            689999999999999999999999998888888876653

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=98.73  E-value=2e-09  Score=66.19  Aligned_cols=42  Identities=31%  Similarity=0.365  Sum_probs=8.1

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhC--cCCCcCCCceeEEEEe
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRG--QFHEYQESTIGGCGNV   68 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~--~f~~~~~~tig~~~~~   68 (76)
                      ...+||+++|+.+||||||+++++.+  .|...+.+|++.++..
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~   61 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVV   61 (208)
T ss_dssp             EEEEEEEEC----------------------------------C
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEE
Confidence            45799999999999999999999998  8888889998866543

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=98.73  E-value=4e-09  Score=67.02  Aligned_cols=40  Identities=33%  Similarity=0.471  Sum_probs=27.7

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhh--CcCCCcCCCceeEE
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVR--GQFHEYQESTIGGC   65 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~--~~f~~~~~~tig~~   65 (76)
                      .....+||+++|+++||||||++||+.  ..|...+. +++.+
T Consensus        33 ~~~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~-~~g~d   74 (211)
T 2g3y_A           33 SGNTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCE-VLGED   74 (211)
T ss_dssp             --CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC----CCTT
T ss_pred             cCCCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCC-cccee
Confidence            455679999999999999999999985  34455443 34433

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=98.72  E-value=4.7e-09  Score=63.25  Aligned_cols=41  Identities=24%  Similarity=0.271  Sum_probs=27.5

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ...+||+++|+.++|||||+++|+.+.|...|.+|++..+.
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~   46 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFS   46 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CB
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEE
Confidence            34799999999999999999999999999989999876653

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=98.72  E-value=1.7e-08  Score=59.57  Aligned_cols=38  Identities=45%  Similarity=0.708  Sum_probs=33.9

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      .+||+++|+.++|||||+++++.+.|...+.+|++..+
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~   40 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY   40 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE
Confidence            58999999999999999999999999988888876543

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=98.72  E-value=1e-08  Score=62.26  Aligned_cols=46  Identities=17%  Similarity=0.161  Sum_probs=36.7

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcC-----------CCceeEEEEeCC
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQ-----------ESTIGGCGNVPG   70 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~-----------~~tig~~~~~~~   70 (76)
                      ......+||+++|+.+||||||+ +++.+.|...|           .+|++.++....
T Consensus         9 ~~~~~~~ki~vvG~~~~GKssL~-~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~   65 (198)
T 3t1o_A            9 ANREINFKIVYYGPGLSGKTTNL-KWIYSKVPEGRKGEMVSLATEDERTLFFDFLPLD   65 (198)
T ss_dssp             TTTEEEEEEEEECSTTSSHHHHH-HHHHHTSCGGGBCCCEEEECSSCEEEEEEECCSS
T ss_pred             hccccccEEEEECCCCCCHHHHH-HHHHhhccccccccccccccccccceeeeecccc
Confidence            34567899999999999999999 78888888764           458888876543

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=98.72  E-value=1.7e-08  Score=59.64  Aligned_cols=39  Identities=33%  Similarity=0.485  Sum_probs=35.0

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      .+||+++|+.++|||||+++++.+.|...+.+|++..+.
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~   42 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR   42 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEE
Confidence            689999999999999999999999999888888876653

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=98.70  E-value=2.9e-09  Score=66.71  Aligned_cols=45  Identities=31%  Similarity=0.499  Sum_probs=37.9

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ......+||+++|+.+||||||+++|+.+.|...+.+|++.++..
T Consensus        10 ~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~   54 (221)
T 3gj0_A           10 GEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHP   54 (221)
T ss_dssp             TCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEE
T ss_pred             CCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEE
Confidence            345568999999999999999999999999888888888766543

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=98.70  E-value=2e-08  Score=61.18  Aligned_cols=40  Identities=33%  Similarity=0.621  Sum_probs=34.9

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ...+||+++|+.+||||||+++++.+.|...+.+|++..+
T Consensus        19 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   58 (190)
T 3con_A           19 MTEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSY   58 (190)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred             cceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEE
Confidence            3469999999999999999999999999888888876554

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=98.70  E-value=1.5e-08  Score=61.04  Aligned_cols=39  Identities=26%  Similarity=0.334  Sum_probs=34.6

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ..+||+++|+.++|||||+++|+.+.|...+.+|++..+
T Consensus         4 ~~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~   42 (186)
T 1mh1_A            4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY   42 (186)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCccccee
Confidence            468999999999999999999999999988888886544

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=98.70  E-value=1.2e-08  Score=63.94  Aligned_cols=40  Identities=33%  Similarity=0.478  Sum_probs=29.3

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ...+||+++|+.+||||||+++|+.+.|...|.+|++..+
T Consensus        32 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~   71 (214)
T 2j1l_A           32 VRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERY   71 (214)
T ss_dssp             CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEE
T ss_pred             cceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeE
Confidence            3479999999999999999999999999988888886665

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=98.70  E-value=2.1e-08  Score=61.52  Aligned_cols=40  Identities=33%  Similarity=0.498  Sum_probs=35.7

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ...+||+++|+.++|||||+++++.+.|...|.+|++..+
T Consensus        12 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   51 (206)
T 2bov_A           12 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSY   51 (206)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEE
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEE
Confidence            4579999999999999999999999999988988887665

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.67  E-value=1.7e-08  Score=62.71  Aligned_cols=40  Identities=30%  Similarity=0.456  Sum_probs=29.6

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ...+||+++|+.+||||||+++++.+.|...|.+|++.++
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   62 (207)
T 2fv8_A           23 MIRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENY   62 (207)
T ss_dssp             SEEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEE
T ss_pred             ccCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceE
Confidence            4578999999999999999999999999988888887665

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=98.66  E-value=2.4e-08  Score=61.00  Aligned_cols=41  Identities=44%  Similarity=0.681  Sum_probs=35.8

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ...+||+++|+.++|||||+++++.+.|...+.+|++..+.
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~   46 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYR   46 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEE
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCcccccee
Confidence            34699999999999999999999999998888888876653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=98.66  E-value=4.6e-09  Score=65.18  Aligned_cols=38  Identities=37%  Similarity=0.340  Sum_probs=26.8

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCce
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI   62 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~ti   62 (76)
                      .....+||+++|+++||||||+++|+...+...+.+++
T Consensus        19 ~~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~   56 (195)
T 3cbq_A           19 QKDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPEN   56 (195)
T ss_dssp             ---CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTS
T ss_pred             CCCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCc
Confidence            45568999999999999999999997544433333433

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=98.64  E-value=3.6e-08  Score=57.96  Aligned_cols=38  Identities=34%  Similarity=0.630  Sum_probs=33.5

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      .+||+++|+.++|||||+++++.+.+...+.+|++..+
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~   40 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSY   40 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEE
Confidence            58999999999999999999999999888888876553

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=98.64  E-value=4.3e-08  Score=59.20  Aligned_cols=39  Identities=33%  Similarity=0.617  Sum_probs=34.3

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ..+||+++|+.++|||||+++++.+.|...+.+|++..+
T Consensus         3 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   41 (189)
T 4dsu_A            3 TEYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSY   41 (189)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEE
T ss_pred             cEEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheE
Confidence            478999999999999999999999999988888875443

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=98.63  E-value=6.9e-09  Score=63.13  Aligned_cols=39  Identities=21%  Similarity=0.388  Sum_probs=29.8

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCcee
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG   63 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig   63 (76)
                      ......+||+++|+.+||||||+++|+.+.| ..+.+|++
T Consensus        16 ~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~   54 (181)
T 2h17_A           16 PRGSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIG   54 (181)
T ss_dssp             -----CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSS
T ss_pred             CCCCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCc
Confidence            3455689999999999999999999999888 55666665

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=98.62  E-value=9.4e-09  Score=66.58  Aligned_cols=46  Identities=30%  Similarity=0.348  Sum_probs=37.1

Q ss_pred             ccccceeeEEEECCC---------CCcchhhhhhhhh---CcCCCcCCCce-eEEEEeC
Q psy1355          24 QAKICQYKLVLLGES---------AVGKSSLVLRFVR---GQFHEYQESTI-GGCGNVP   69 (76)
Q Consensus        24 ~~~~~~~kivllG~~---------~vGKtsl~~~~~~---~~f~~~~~~ti-g~~~~~~   69 (76)
                      ......+||+++|++         +||||||+++|+.   +.|...+.+|+ +.++..+
T Consensus        14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~   72 (255)
T 3c5h_A           14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGR   72 (255)
T ss_dssp             SSCCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTST
T ss_pred             CCCCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCccccccccee
Confidence            345668999999999         9999999999998   67777788876 5665433

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=98.60  E-value=2.2e-08  Score=62.38  Aligned_cols=42  Identities=29%  Similarity=0.635  Sum_probs=34.7

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      .....+||+++|+.+||||||+++++.+.|...+.+|++..+
T Consensus         7 ~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   48 (218)
T 4djt_A            7 RRELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVN   48 (218)
T ss_dssp             ---CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEE
T ss_pred             cccCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceee
Confidence            345689999999999999999999999998888888876554

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=98.60  E-value=8.8e-09  Score=63.55  Aligned_cols=37  Identities=16%  Similarity=0.191  Sum_probs=22.4

Q ss_pred             CCCccccccceeeEEEECCCCCcchhhhhhhhhCcCCC
Q psy1355          19 PNDQTQAKICQYKLVLLGESAVGKSSLVLRFVRGQFHE   56 (76)
Q Consensus        19 ~~~~~~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~   56 (76)
                      +...+......+||+++|+.+||||||++++. +.|..
T Consensus        10 ~~~~~~~~~~~~ki~~vG~~~vGKTsLi~~l~-~~~~~   46 (196)
T 3llu_A           10 GRENLYFQGSKPRILLMGLRRSGKSSIQKVVF-HKMSP   46 (196)
T ss_dssp             ----------CCEEEEEESTTSSHHHHHHHHH-SCCCG
T ss_pred             CCCCCcccCcceEEEEECCCCCCHHHHHHHHH-hcCCC
Confidence            33334566779999999999999999997554 45543

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=98.60  E-value=1.3e-08  Score=62.93  Aligned_cols=32  Identities=38%  Similarity=0.586  Sum_probs=24.0

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhh--CcCCCcCC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVR--GQFHEYQE   59 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~--~~f~~~~~   59 (76)
                      ..+||+++|+++||||||+++|+.  ..|...+.
T Consensus         5 ~~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~   38 (192)
T 2cjw_A            5 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXE   38 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHSCCC----G
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCcCCcCcccc
Confidence            469999999999999999999985  34555443

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=98.55  E-value=3.1e-08  Score=58.94  Aligned_cols=36  Identities=36%  Similarity=0.370  Sum_probs=22.5

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG   64 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~   64 (76)
                      .+||+++|+++||||||+++|+...+...+.++.+.
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~   37 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSE   37 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcC
Confidence            589999999999999999999877766555444433

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=98.55  E-value=2.7e-08  Score=59.40  Aligned_cols=31  Identities=39%  Similarity=0.622  Sum_probs=24.0

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQ   58 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~   58 (76)
                      ..+||+++|+++||||||+++|+.+.+...+
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~~~~~~   33 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQERDLH   33 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC-----C
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCCCcccc
Confidence            4789999999999999999999988876544

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=98.54  E-value=8.5e-08  Score=59.51  Aligned_cols=36  Identities=28%  Similarity=0.479  Sum_probs=30.2

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCce
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI   62 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~ti   62 (76)
                      ...+||+++|+++||||||+++|+.+.|...|.++.
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~~   40 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSIT   40 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCCS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCcc
Confidence            457899999999999999999999999998887654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=98.53  E-value=2.3e-08  Score=59.98  Aligned_cols=37  Identities=16%  Similarity=0.203  Sum_probs=31.4

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCcee
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG   63 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig   63 (76)
                      ...+||+++|+.+||||||+++++.+.|...+.++++
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~   42 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGIT   42 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCcee
Confidence            3478999999999999999999999888877666553

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=98.53  E-value=9.5e-08  Score=57.93  Aligned_cols=38  Identities=21%  Similarity=0.357  Sum_probs=32.4

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC   65 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~   65 (76)
                      ...+||+++|+.+||||||+++++.+. ...+.+|++..
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~   53 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFN   53 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEE
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccc
Confidence            457999999999999999999999888 66788888744

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=98.52  E-value=1e-07  Score=56.64  Aligned_cols=37  Identities=24%  Similarity=0.442  Sum_probs=31.5

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEE
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC   65 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~   65 (76)
                      ..+||+++|+.++|||||+++++.+.|.. +.+|++..
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~-~~~t~~~~   42 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEVVT-TIPTIGFN   42 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCC-CCCCSSEE
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCCCC-cCCcCccc
Confidence            46899999999999999999999988864 67787654

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=97.92  E-value=1.1e-08  Score=63.26  Aligned_cols=42  Identities=24%  Similarity=0.268  Sum_probs=36.1

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      .....+||+++|+.+||||||+.+|+.+.|...+.+|++..+
T Consensus        26 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~   67 (204)
T 3th5_A           26 FQGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNY   67 (204)
Confidence            345679999999999999999999999999888888876554

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=98.51  E-value=4.6e-08  Score=57.94  Aligned_cols=34  Identities=24%  Similarity=0.486  Sum_probs=29.5

Q ss_pred             eeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeE
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG   64 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~   64 (76)
                      +||+++|+++||||||+++++.+.|.. +.+|++.
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~~-~~~t~~~   34 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF   34 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSC-CCCCSSC
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcCc-ccCcCce
Confidence            689999999999999999999888875 5777763

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=98.45  E-value=5.6e-08  Score=58.42  Aligned_cols=33  Identities=21%  Similarity=0.310  Sum_probs=25.3

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCc
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST   61 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~t   61 (76)
                      .+|++++|++|||||||+++++...+...+.++
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~~~~~~~   35 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVYIGNWPG   35 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSSCC----
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCeeccCCCC
Confidence            489999999999999999999987765444343

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=98.45  E-value=6.9e-08  Score=58.53  Aligned_cols=35  Identities=20%  Similarity=0.295  Sum_probs=27.7

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCce
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI   62 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~ti   62 (76)
                      ..+|++++|++|||||||+++++...+...+.+++
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~   40 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVYIGNWPGV   40 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEEEEECTTS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCccccCCCCe
Confidence            46899999999999999999999866554444443

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=98.44  E-value=1.1e-07  Score=57.50  Aligned_cols=34  Identities=24%  Similarity=0.432  Sum_probs=29.5

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCce
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI   62 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~ti   62 (76)
                      .+||+++|+.+||||||+++++.+.|...+.+++
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~   34 (190)
T 2cxx_A            1 MATIIFAGRSNVGKSTLIYRLTGKKVRRGKRPGV   34 (190)
T ss_dssp             -CEEEEEEBTTSSHHHHHHHHHSCCCSSSSSTTC
T ss_pred             CcEEEEECCCCCCHHHHHHHHhCcCCccCCCCCc
Confidence            3799999999999999999999998887776654

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=98.43  E-value=7.3e-08  Score=58.69  Aligned_cols=36  Identities=22%  Similarity=0.433  Sum_probs=31.2

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCcee
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG   63 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig   63 (76)
                      ...+||+++|+.+||||||+++++.+.|. .+.+|++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~   49 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIG   49 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCc
Confidence            34799999999999999999999988887 5677765

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=98.42  E-value=2.9e-07  Score=60.27  Aligned_cols=41  Identities=24%  Similarity=0.292  Sum_probs=36.0

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ...+||+++|+.++|||||+.+|+.+.|...+.+|++..+.
T Consensus       153 ~~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~  193 (332)
T 2wkq_A          153 KELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS  193 (332)
T ss_dssp             TTCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEE
T ss_pred             cceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeE
Confidence            34689999999999999999999999999889998876653

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=98.40  E-value=8.7e-08  Score=58.44  Aligned_cols=37  Identities=22%  Similarity=0.301  Sum_probs=30.4

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG   64 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~   64 (76)
                      ...+||+++|+++||||||+++++.+.+ ..+.+|+|.
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~~~-~~~~~t~g~   50 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGF   50 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTE
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCC-CcccCcCCe
Confidence            4579999999999999999999997755 346677764

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.40  E-value=4.5e-08  Score=59.04  Aligned_cols=36  Identities=25%  Similarity=0.506  Sum_probs=30.7

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCcee
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG   63 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig   63 (76)
                      ...+||+++|+.+||||||+++++.+.+ ..+.+|++
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~   51 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIG   51 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCc
Confidence            4579999999999999999999998887 55667765

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=98.39  E-value=2e-07  Score=57.30  Aligned_cols=37  Identities=22%  Similarity=0.231  Sum_probs=29.2

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG   64 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~   64 (76)
                      ...+||+++|+++||||||+++++.+.|. .|.+|++.
T Consensus        21 ~~~~ki~~vG~~~vGKSsli~~l~~~~~~-~~~~t~~~   57 (190)
T 1m2o_B           21 NKHGKLLFLGLDNAGKTTLLHMLKNDRLA-TLQPTWHP   57 (190)
T ss_dssp             ---CEEEEEESTTSSHHHHHHHHHHSCCC-CCCCCCSC
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-ccccCCCC
Confidence            34679999999999999999999998876 46677654

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=98.38  E-value=8.9e-08  Score=59.95  Aligned_cols=40  Identities=18%  Similarity=0.254  Sum_probs=34.2

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ..+|++++|++|||||||+.+|+...|...+.++++.++.
T Consensus        37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d~~   76 (226)
T 2hf9_A           37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVI   76 (226)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEETT
T ss_pred             CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECCCC
Confidence            4689999999999999999999988887767778877653

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=98.38  E-value=1.1e-07  Score=58.57  Aligned_cols=37  Identities=24%  Similarity=0.427  Sum_probs=31.2

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG   64 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~   64 (76)
                      ...+||+++|+.+||||||+++++.+.|.. +.+|++.
T Consensus        27 ~~~~ki~v~G~~~vGKSsLi~~l~~~~~~~-~~~t~~~   63 (192)
T 2b6h_A           27 KKQMRILMVGLDAAGKTTILYKLKLGEIVT-TIPTIGF   63 (192)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHCSSCCEE-EEEETTE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHhCCccc-cCCcCce
Confidence            347999999999999999999999888874 5677764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=98.36  E-value=1.5e-07  Score=59.38  Aligned_cols=29  Identities=28%  Similarity=0.362  Sum_probs=26.1

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFH   55 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~   55 (76)
                      ...+||+++|+++||||||+++|+.+.|.
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~   55 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVD   55 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEE
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc
Confidence            45799999999999999999999988775

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=98.36  E-value=1.5e-07  Score=64.12  Aligned_cols=37  Identities=27%  Similarity=0.250  Sum_probs=30.3

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCC---cCCCceeEEEE
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHE---YQESTIGGCGN   67 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~---~~~~tig~~~~   67 (76)
                      ||+++|++|||||||+.++..+.++.   .+.+|+|.++.
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~   40 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHNMQPLDTLYLESTSNPSLE   40 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCE
T ss_pred             CEEEECCCCCCHHHHHHHHHcCCCCCccceecCeeeeeeE
Confidence            79999999999999998887665543   36789988765

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=98.36  E-value=1.5e-07  Score=58.48  Aligned_cols=40  Identities=23%  Similarity=0.257  Sum_probs=32.4

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCC---cCCCceeEE
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHE---YQESTIGGC   65 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~---~~~~tig~~   65 (76)
                      ....+||+++|++|+|||||+++++.+.|..   .+.++++.+
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~~   51 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD   51 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEETT
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEEE
Confidence            4457899999999999999999999988765   466776543

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=98.36  E-value=1.8e-07  Score=66.07  Aligned_cols=43  Identities=23%  Similarity=0.350  Sum_probs=28.8

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ....+||+++|+++||||||+++++.+.|...+.+|++.++..
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~   80 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVT   80 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEE
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEE
Confidence            4567999999999999999999999999999999999988864

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=98.34  E-value=1.4e-07  Score=57.49  Aligned_cols=37  Identities=27%  Similarity=0.269  Sum_probs=24.1

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCcee
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG   63 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig   63 (76)
                      ...+||+++|+.++|||||+++++.+.|...+.++.+
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~   57 (195)
T 1svi_A           21 GGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPG   57 (195)
T ss_dssp             SCCCEEEEEEBTTSSHHHHHHHHHTC-----------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCC
Confidence            4579999999999999999999998877666655554

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=98.33  E-value=1.8e-07  Score=57.95  Aligned_cols=35  Identities=26%  Similarity=0.316  Sum_probs=25.6

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCcee
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG   63 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig   63 (76)
                      ..+||+++|+++||||||+++++.+.|. .|.+|++
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~~~-~~~~t~~   58 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDRLG-QHVPTLH   58 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCCCC-ccCCCCC
Confidence            4689999999999999999999988775 3566654

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=98.32  E-value=1.1e-07  Score=57.85  Aligned_cols=37  Identities=24%  Similarity=0.411  Sum_probs=30.8

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG   64 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~   64 (76)
                      ...+||+++|+.+||||||+++++.+.|.. +.+|++.
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~-~~~t~~~   56 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDVVT-TVPTVGV   56 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCCEE-ECSSTTC
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCCCC-cCCCCce
Confidence            357999999999999999999999888764 5667653

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=98.32  E-value=2.5e-07  Score=56.37  Aligned_cols=39  Identities=21%  Similarity=0.237  Sum_probs=26.6

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCC---cCCCceeEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHE---YQESTIGGC   65 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~---~~~~tig~~   65 (76)
                      ...+||+++|+.|||||||+++++.+.|..   .+.++++.+
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~   87 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAAD   87 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------C
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeee
Confidence            457899999999999999999999887755   344555443

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=98.30  E-value=3.1e-07  Score=54.43  Aligned_cols=27  Identities=41%  Similarity=0.492  Sum_probs=22.2

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFH   55 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~   55 (76)
                      .+||+++|+++||||||+++++...+.
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~~~~   28 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGVEDG   28 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC---
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCcccc
Confidence            589999999999999999999865544

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=98.28  E-value=6.7e-07  Score=59.38  Aligned_cols=40  Identities=30%  Similarity=0.303  Sum_probs=32.7

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhC--cCC-CcCCCceeEEEE
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRG--QFH-EYQESTIGGCGN   67 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~--~f~-~~~~~tig~~~~   67 (76)
                      ..+||+++|+++||||||+++++.+  .+. ..+.+|++.++.
T Consensus         2 ~~~KI~lvG~~~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~   44 (307)
T 3r7w_A            2 LGSKLLLMGRSGSGKSSMRSIIFSNYSAFDTRRLGATIDVEHS   44 (307)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCccccCcCCccceEEE
Confidence            3689999999999999999998877  333 357788887765

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=98.27  E-value=4.2e-07  Score=61.02  Aligned_cols=39  Identities=21%  Similarity=0.344  Sum_probs=32.4

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ...+||+|+|+.+||||||+.+|+.+.|...+ +|++.++
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~~-pT~~~~~  201 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTTI-PTIGFNV  201 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEEE-EETTEEE
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCcc-cccceEE
Confidence            45789999999999999999999998887654 6776554

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=98.21  E-value=6.7e-07  Score=54.08  Aligned_cols=29  Identities=28%  Similarity=0.370  Sum_probs=25.4

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFH   55 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~   55 (76)
                      ...+||+++|+.++|||||+++++.+.+.
T Consensus        21 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~   49 (195)
T 3pqc_A           21 PLKGEVAFVGRSNVGKSSLLNALFNRKIA   49 (195)
T ss_dssp             CTTCEEEEEEBTTSSHHHHHHHHHTSCCS
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHcCccc
Confidence            45789999999999999999999987643

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=98.16  E-value=7.9e-07  Score=57.93  Aligned_cols=41  Identities=24%  Similarity=0.397  Sum_probs=25.5

Q ss_pred             ccceeeEEEECCCCCcchhhhhh-hhhCcCCCcC-------CCceeEEE
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLR-FVRGQFHEYQ-------ESTIGGCG   66 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~-~~~~~f~~~~-------~~tig~~~   66 (76)
                      ....|+|+++|.+|+|||||+++ +..+.+...+       .+|++.++
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~   53 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQ   53 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEE
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEE
Confidence            44689999999999999999987 4556666666       66665543

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=98.15  E-value=8.1e-07  Score=56.47  Aligned_cols=35  Identities=20%  Similarity=0.320  Sum_probs=26.7

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCC
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQES   60 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~   60 (76)
                      ....+||+|+|++|+|||||+++++...+.....+
T Consensus        26 ~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~   60 (239)
T 3lxx_A           26 RNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTA   60 (239)
T ss_dssp             --CEEEEEEECCTTSSHHHHHHHHHTSCCSCC---
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCC
Confidence            34579999999999999999999998777654433

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=98.12  E-value=1.1e-06  Score=51.65  Aligned_cols=26  Identities=38%  Similarity=0.572  Sum_probs=23.0

Q ss_pred             eeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRGQFH   55 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~~f~   55 (76)
                      +|++++|+.++|||||+++++.+.+.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~   27 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKRSA   27 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCCC-
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCee
Confidence            68999999999999999999987643

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=98.08  E-value=1.3e-06  Score=53.87  Aligned_cols=36  Identities=22%  Similarity=0.237  Sum_probs=22.5

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCcee
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG   63 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig   63 (76)
                      ..++++++|++|+|||||+++++...|...+.++.|
T Consensus        25 ~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G   60 (210)
T 1pui_A           25 TGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPG   60 (210)
T ss_dssp             CSEEEEEEECTTSSHHHHHTTTCCC-----------
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCc
Confidence            457899999999999999998887665444444444

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=98.04  E-value=1.2e-06  Score=56.87  Aligned_cols=36  Identities=17%  Similarity=0.161  Sum_probs=28.0

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG   64 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~   64 (76)
                      .+||+++|++|||||||+++++...+...+.++++.
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~~~~~~~~~t~   38 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQHVGNWPGVTV   38 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCEEEEECTTSSC
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCcccCCCCCeEE
Confidence            589999999999999999999877664434444433

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=98.03  E-value=2e-06  Score=52.06  Aligned_cols=26  Identities=31%  Similarity=0.410  Sum_probs=23.3

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      .+|++++|+++||||||+++++...+
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~~   29 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGREA   29 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            57999999999999999999987654

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=97.95  E-value=4.1e-06  Score=54.45  Aligned_cols=28  Identities=29%  Similarity=0.266  Sum_probs=24.7

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFH   55 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~   55 (76)
                      ..+||+++|+++||||||+++++...+.
T Consensus         4 ~~~kI~lvG~~nvGKTsL~n~l~g~~~~   31 (258)
T 3a1s_A            4 HMVKVALAGCPNVGKTSLFNALTGTKQY   31 (258)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHTTCEE
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCCCc
Confidence            4689999999999999999999976654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=97.88  E-value=3.9e-06  Score=54.87  Aligned_cols=28  Identities=18%  Similarity=0.345  Sum_probs=24.5

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHE   56 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~   56 (76)
                      .++|+++|.++||||||+++++...+..
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~~~v   30 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSRQRV   30 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTCEEE
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCccc
Confidence            5899999999999999999998766543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=97.88  E-value=8e-06  Score=53.66  Aligned_cols=26  Identities=23%  Similarity=0.340  Sum_probs=22.8

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      ..+||+++|+++||||||+++++...
T Consensus         2 ~~~kI~lvG~~nvGKSTL~n~L~g~~   27 (272)
T 3b1v_A            2 SMTEIALIGNPNSGKTSLFNLITGHN   27 (272)
T ss_dssp             -CEEEEEECCTTSSHHHHHHHHHCCC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHCCC
Confidence            35899999999999999999998754

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=97.87  E-value=1e-05  Score=51.86  Aligned_cols=34  Identities=26%  Similarity=0.427  Sum_probs=27.3

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCc-CCCcCCC
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQ-FHEYQES   60 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~-f~~~~~~   60 (76)
                      ...++|+|+|++++|||||+++++... |...+.+
T Consensus        20 ~~~~~I~lvG~~g~GKStl~n~l~~~~~~~~~~~~   54 (260)
T 2xtp_A           20 RSELRIILVGKTGTGKSAAGNSILRKQAFESKLGS   54 (260)
T ss_dssp             -CCEEEEEEECTTSCHHHHHHHHHTSCCSCCCTTS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhCCCCcccCCCC
Confidence            457899999999999999999998766 5555544

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.87  E-value=9.9e-06  Score=55.07  Aligned_cols=33  Identities=30%  Similarity=0.531  Sum_probs=23.3

Q ss_pred             ccceeeEEEECCCCCcchhhhhhh-hhCcCCCcC
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRF-VRGQFHEYQ   58 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~-~~~~f~~~~   58 (76)
                      ....|+|+|+|++|+|||||++++ ..+.|...+
T Consensus        34 ~~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~   67 (361)
T 2qag_A           34 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERV   67 (361)
T ss_dssp             HCCEECEEECCCTTSCHHHHHHHHTTCCC-----
T ss_pred             CCCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCc
Confidence            455799999999999999999984 445555444

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.87  E-value=2.4e-05  Score=50.35  Aligned_cols=38  Identities=18%  Similarity=0.242  Sum_probs=28.6

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      +.++|++|+|||||++ .+.+...    |+ .+++.++|+++..
T Consensus        34 ~~iiG~nGsGKSTLl~-~l~Gl~~----p~-~G~I~~~g~~~~~   71 (235)
T 3tif_A           34 VSIMGPSGSGKSTMLN-IIGCLDK----PT-EGEVYIDNIKTND   71 (235)
T ss_dssp             EEEECSTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEECTT
T ss_pred             EEEECCCCCcHHHHHH-HHhcCCC----CC-ceEEEECCEEccc
Confidence            6799999999999994 5555533    33 5788888887653

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=97.85  E-value=6.3e-06  Score=51.13  Aligned_cols=27  Identities=22%  Similarity=0.324  Sum_probs=24.4

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      ...+||+++|+.++|||||+++++.+.
T Consensus        27 ~~~~~i~v~G~~~~GKSslin~l~~~~   53 (223)
T 4dhe_A           27 TVQPEIAFAGRSNAGKSTAINVLCNQK   53 (223)
T ss_dssp             CCSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred             CCCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence            457899999999999999999999876

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=97.75  E-value=3.8e-05  Score=53.04  Aligned_cols=38  Identities=29%  Similarity=0.404  Sum_probs=29.3

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      +.++|++|||||||+ +.+.+...    ++ .+++.++|+++..
T Consensus        32 ~~llGpsGsGKSTLL-r~iaGl~~----p~-~G~I~i~G~~~~~   69 (381)
T 3rlf_A           32 VVFVGPSGCGKSTLL-RMIAGLET----IT-SGDLFIGEKRMND   69 (381)
T ss_dssp             EEEECCTTSSHHHHH-HHHHTSSC----CS-EEEEEETTEECTT
T ss_pred             EEEEcCCCchHHHHH-HHHHcCCC----CC-CeEEEECCEECCC
Confidence            679999999999999 56666543    33 6788899988753

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=97.75  E-value=6.7e-06  Score=53.45  Aligned_cols=26  Identities=19%  Similarity=0.367  Sum_probs=22.8

Q ss_pred             eeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRGQFH   55 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~~f~   55 (76)
                      .||+++|+++||||||+++++...+.
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~~~   27 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNANQR   27 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTSEE
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCCC
Confidence            48999999999999999999876554

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=97.75  E-value=4.7e-05  Score=49.34  Aligned_cols=38  Identities=24%  Similarity=0.378  Sum_probs=28.5

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      .+.|+|++|+|||||++ .+.+...    ++ .+++.++|+++.
T Consensus        37 ~~~i~G~nGsGKSTLl~-~l~Gl~~----p~-~G~I~i~g~~~~   74 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTK-LIQRFYI----PE-NGQVLIDGHDLA   74 (247)
T ss_dssp             EEEEECSTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEETT
T ss_pred             EEEEECCCCCCHHHHHH-HHhcCCC----CC-CcEEEECCEEhh
Confidence            46799999999999995 5555532    33 578888888764

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=97.74  E-value=9.3e-06  Score=53.94  Aligned_cols=34  Identities=29%  Similarity=0.475  Sum_probs=20.9

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhh-CcCCCcC
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVR-GQFHEYQ   58 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~-~~f~~~~   58 (76)
                      -....|+|+|+|++|+|||||++++.. +.++..+
T Consensus        14 l~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~g   48 (301)
T 2qnr_A           14 KKGFEFTLMVVGESGLGKSTLINSLFLTDLYPERV   48 (301)
T ss_dssp             ----CEEEEEEEETTSSHHHHHHHHHC--------
T ss_pred             EcCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence            345679999999999999999988554 3555443

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=97.74  E-value=3.2e-05  Score=53.86  Aligned_cols=30  Identities=27%  Similarity=0.522  Sum_probs=25.5

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      -....|+|+|+|++|+|||||++.++...+
T Consensus        27 l~~vsf~I~lvG~sGaGKSTLln~L~g~~~   56 (418)
T 2qag_C           27 KRGFEFTLMVVGESGLGKSTLINSLFLTDL   56 (418)
T ss_dssp             C-CCCEEEEEECCTTSSHHHHHHHHTTCCC
T ss_pred             ecCCCEEEEEECCCCCcHHHHHHHHhCCCC
Confidence            455678999999999999999998887666

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=97.71  E-value=2.7e-05  Score=50.32  Aligned_cols=27  Identities=33%  Similarity=0.482  Sum_probs=24.4

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      ..+||+++|+.++|||||+++++...+
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~~   61 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQV   61 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSCC
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence            479999999999999999999997764

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=97.70  E-value=4e-05  Score=50.27  Aligned_cols=38  Identities=21%  Similarity=0.479  Sum_probs=28.1

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      +.++|++|+|||||++ .+.+...    ++ .+++.++|+++..
T Consensus        40 ~~liG~nGsGKSTLl~-~l~Gl~~----p~-~G~I~~~g~~~~~   77 (266)
T 4g1u_C           40 VAIIGPNGAGKSTLLR-LLTGYLS----PS-HGECHLLGQNLNS   77 (266)
T ss_dssp             EEEECCTTSCHHHHHH-HHTSSSC----CS-SCEEEETTEETTT
T ss_pred             EEEECCCCCcHHHHHH-HHhcCCC----CC-CcEEEECCEECCc
Confidence            5799999999999995 5555533    33 4677888887753

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=97.70  E-value=3.5e-05  Score=51.67  Aligned_cols=39  Identities=28%  Similarity=0.561  Sum_probs=29.4

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      .+.|+|++|+|||||++ .+.+.+    .++ .+.+.++|+++..
T Consensus        82 ~vaivG~sGsGKSTLl~-ll~gl~----~p~-~G~I~i~G~~i~~  120 (306)
T 3nh6_A           82 TLALVGPSGAGKSTILR-LLFRFY----DIS-SGCIRIDGQDISQ  120 (306)
T ss_dssp             EEEEESSSCHHHHHHHH-HHTTSS----CCS-EEEEEETTEETTS
T ss_pred             EEEEECCCCchHHHHHH-HHHcCC----CCC-CcEEEECCEEccc
Confidence            36799999999999994 555543    343 6788899988754

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.69  E-value=5.8e-05  Score=48.15  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=27.5

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      +.++|++|+|||||++ .+.+...    |+ .+.+.++|+++.
T Consensus        33 ~~iiG~nGsGKSTLl~-~l~Gl~~----p~-~G~i~~~g~~~~   69 (224)
T 2pcj_A           33 VSIIGASGSGKSTLLY-ILGLLDA----PT-EGKVFLEGKEVD   69 (224)
T ss_dssp             EEEEECTTSCHHHHHH-HHTTSSC----CS-EEEEEETTEECC
T ss_pred             EEEECCCCCCHHHHHH-HHhcCCC----CC-ceEEEECCEECC
Confidence            6799999999999995 5555533    33 567788887764

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.68  E-value=3.6e-05  Score=53.24  Aligned_cols=27  Identities=26%  Similarity=0.379  Sum_probs=23.7

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      ..+|++++|++|||||||+++++...+
T Consensus       179 ~~~kvaivG~~gvGKSTLln~l~g~~~  205 (439)
T 1mky_A          179 DAIKVAIVGRPNVGKSTLFNAILNKER  205 (439)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred             cCceEEEECCCCCCHHHHHHHHhCCcc
Confidence            358999999999999999999887654

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=97.67  E-value=5.8e-05  Score=51.68  Aligned_cols=37  Identities=24%  Similarity=0.328  Sum_probs=28.2

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      +.++|++|||||||+ +.+.+...    ++ .+++.++|+++.
T Consensus        32 ~~llGpnGsGKSTLL-r~iaGl~~----p~-~G~I~i~g~~i~   68 (359)
T 2yyz_A           32 VALLGPSGCGKTTTL-LMLAGIYK----PT-SGEIYFDDVLVN   68 (359)
T ss_dssp             EEEECSTTSSHHHHH-HHHHTSSC----CS-EEEEEETTEECT
T ss_pred             EEEEcCCCchHHHHH-HHHHCCCC----CC-ccEEEECCEECC
Confidence            679999999999999 46656533    33 577888888764

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.66  E-value=6.5e-05  Score=49.59  Aligned_cols=36  Identities=25%  Similarity=0.329  Sum_probs=27.7

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR   73 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~   73 (76)
                      +.|+|++|+|||||++ .+.+...    ++ .+++.++|+++
T Consensus        37 ~~iiGpnGsGKSTLl~-~l~Gl~~----p~-~G~I~~~G~~i   72 (275)
T 3gfo_A           37 TAILGGNGVGKSTLFQ-NFNGILK----PS-SGRILFDNKPI   72 (275)
T ss_dssp             EEEECCTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEEC
T ss_pred             EEEECCCCCCHHHHHH-HHHcCCC----CC-CeEEEECCEEC
Confidence            6799999999999995 5555543    33 57888898876

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=97.66  E-value=7.1e-05  Score=51.30  Aligned_cols=37  Identities=32%  Similarity=0.470  Sum_probs=28.1

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      +.++|++|||||||+ +.+.+...    ++ .+.+.++|+++.
T Consensus        32 ~~llGpnGsGKSTLL-r~iaGl~~----p~-~G~I~i~g~~i~   68 (362)
T 2it1_A           32 MALLGPSGSGKSTLL-YTIAGIYK----PT-SGKIYFDEKDVT   68 (362)
T ss_dssp             EEEECCTTSSHHHHH-HHHHTSSC----CS-EEEEEETTEECT
T ss_pred             EEEECCCCchHHHHH-HHHhcCCC----CC-ceEEEECCEECC
Confidence            679999999999999 46656533    33 577888888764

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=97.65  E-value=3.1e-05  Score=50.15  Aligned_cols=29  Identities=28%  Similarity=0.458  Sum_probs=25.7

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFH   55 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~   55 (76)
                      ...+||+++|++++|||||+++++...|.
T Consensus        24 ~~~~~i~vvG~~~~GKSSLln~l~g~~~~   52 (299)
T 2aka_B           24 LDLPQIAVVGGQSAGKSSVLENFVGRDFL   52 (299)
T ss_dssp             CCCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHCCCcC
Confidence            45689999999999999999999988774

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=97.65  E-value=7.3e-05  Score=51.38  Aligned_cols=37  Identities=38%  Similarity=0.491  Sum_probs=28.1

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      +.++|++|||||||+ +.+.+...    ++ .+.+.++|+++.
T Consensus        40 ~~llGpnGsGKSTLL-r~iaGl~~----p~-~G~I~i~g~~i~   76 (372)
T 1v43_A           40 LVLLGPSGCGKTTTL-RMIAGLEE----PT-EGRIYFGDRDVT   76 (372)
T ss_dssp             EEEECCTTSSHHHHH-HHHHTSSC----CS-EEEEEETTEECT
T ss_pred             EEEECCCCChHHHHH-HHHHcCCC----CC-ceEEEECCEECC
Confidence            679999999999999 46666533    33 577888888764

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=97.64  E-value=6.8e-05  Score=51.57  Aligned_cols=38  Identities=32%  Similarity=0.372  Sum_probs=29.0

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      +.++|++|+|||||+ +.+.+...    |+ .+.+.++|+++..
T Consensus        57 ~~IiGpnGaGKSTLl-r~i~GL~~----p~-~G~I~i~G~~i~~   94 (366)
T 3tui_C           57 YGVIGASGAGKSTLI-RCVNLLER----PT-EGSVLVDGQELTT   94 (366)
T ss_dssp             EEEECCTTSSHHHHH-HHHHTSSC----CS-EEEEEETTEECSS
T ss_pred             EEEEcCCCchHHHHH-HHHhcCCC----CC-ceEEEECCEECCc
Confidence            569999999999999 46655532    33 6788899988753

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=97.64  E-value=6.9e-05  Score=51.24  Aligned_cols=37  Identities=27%  Similarity=0.384  Sum_probs=28.0

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      +.++|++|||||||++ .+.+...    ++ .+++.++|+++.
T Consensus        44 ~~llGpnGsGKSTLLr-~iaGl~~----p~-~G~I~i~g~~i~   80 (355)
T 1z47_A           44 VGLLGPSGSGKTTILR-LIAGLER----PT-KGDVWIGGKRVT   80 (355)
T ss_dssp             EEEECSTTSSHHHHHH-HHHTSSC----CS-EEEEEETTEECT
T ss_pred             EEEECCCCCcHHHHHH-HHhCCCC----CC-ccEEEECCEECC
Confidence            6799999999999994 5656533    33 577888888764

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=97.64  E-value=4.3e-05  Score=52.38  Aligned_cols=36  Identities=28%  Similarity=0.500  Sum_probs=27.4

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR   73 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~   73 (76)
                      +.++|++|||||||+ +.+.+...    ++ .+++.++|+++
T Consensus        33 ~~llGpsGsGKSTLL-r~iaGl~~----p~-~G~I~i~G~~i   68 (359)
T 3fvq_A           33 LFIIGASGCGKTTLL-RCLAGFEQ----PD-SGEISLSGKTI   68 (359)
T ss_dssp             EEEEESTTSSHHHHH-HHHHTSSC----CS-EEEEEETTEEE
T ss_pred             EEEECCCCchHHHHH-HHHhcCCC----CC-CcEEEECCEEC
Confidence            679999999999999 46656533    33 57788888776

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=97.64  E-value=5.6e-05  Score=52.24  Aligned_cols=38  Identities=24%  Similarity=0.333  Sum_probs=29.4

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      .+.|+|++|||||||+ +.+.+..     + ..+++.++|+++..
T Consensus        49 ~~~llGpsGsGKSTLL-r~iaGl~-----~-~~G~I~i~G~~i~~   86 (390)
T 3gd7_A           49 RVGLLGRTGSGKSTLL-SAFLRLL-----N-TEGEIQIDGVSWDS   86 (390)
T ss_dssp             EEEEEESTTSSHHHHH-HHHHTCS-----E-EEEEEEESSCBTTS
T ss_pred             EEEEECCCCChHHHHH-HHHhCCC-----C-CCeEEEECCEECCc
Confidence            3679999999999999 5666653     2 25888999988754

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.63  E-value=9.3e-05  Score=47.65  Aligned_cols=37  Identities=22%  Similarity=0.361  Sum_probs=27.5

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      +.++|++|+|||||++ .+.+...    |+ .+++.++|+++.
T Consensus        35 ~~l~G~nGsGKSTLl~-~l~Gl~~----p~-~G~i~~~g~~~~   71 (240)
T 1ji0_A           35 VTLIGANGAGKTTTLS-AIAGLVR----AQ-KGKIIFNGQDIT   71 (240)
T ss_dssp             EEEECSTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEECT
T ss_pred             EEEECCCCCCHHHHHH-HHhCCCC----CC-CceEEECCEECC
Confidence            6799999999999995 5555532    33 577788887764

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=97.62  E-value=9.4e-05  Score=48.05  Aligned_cols=37  Identities=22%  Similarity=0.405  Sum_probs=27.6

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      +.++|++|+|||||++ .+.+...    |+ .+++.++|+++.
T Consensus        36 ~~liG~nGsGKSTLlk-~l~Gl~~----p~-~G~i~~~g~~~~   72 (257)
T 1g6h_A           36 TLIIGPNGSGKSTLIN-VITGFLK----AD-EGRVYFENKDIT   72 (257)
T ss_dssp             EEEECSTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEECT
T ss_pred             EEEECCCCCCHHHHHH-HHhCCCC----CC-CcEEEECCEECC
Confidence            6799999999999995 5555533    33 577888887764

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=97.62  E-value=2.1e-05  Score=51.64  Aligned_cols=24  Identities=29%  Similarity=0.685  Sum_probs=20.5

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      +.|++.++|++|+|||||++.++.
T Consensus         1 f~f~v~lvG~nGaGKSTLln~L~g   24 (270)
T 3sop_A            1 FDFNIMVVGQSGLGKSTLVNTLFK   24 (270)
T ss_dssp             CEEEEEEEESSSSSHHHHHHHHHH
T ss_pred             CeeEEEEECCCCCCHHHHHHHHhC
Confidence            368999999999999999976553

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=97.62  E-value=7.9e-05  Score=48.64  Aligned_cols=37  Identities=22%  Similarity=0.321  Sum_probs=27.3

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      +.|+|++|+|||||++ .+.+...    |+ .+.+.++|+++.
T Consensus        35 ~~liG~nGsGKSTLlk-~l~Gl~~----p~-~G~i~~~g~~~~   71 (262)
T 1b0u_A           35 ISIIGSSGSGKSTFLR-CINFLEK----PS-EGAIIVNGQNIN   71 (262)
T ss_dssp             EEEECCTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEECC
T ss_pred             EEEECCCCCCHHHHHH-HHhcCCC----CC-CcEEEECCEEcc
Confidence            6799999999999995 5555533    33 577788887763

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.61  E-value=9.4e-05  Score=47.82  Aligned_cols=38  Identities=29%  Similarity=0.414  Sum_probs=28.0

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      .+.++|++|+|||||++ .+.+...    |+ .+++.++|+++.
T Consensus        26 ~~~liG~nGsGKSTLl~-~l~Gl~~----p~-~G~i~~~g~~~~   63 (240)
T 2onk_A           26 YCVLLGPTGAGKSVFLE-LIAGIVK----PD-RGEVRLNGADIT   63 (240)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHTSSC----CS-EEEEEETTEECT
T ss_pred             EEEEECCCCCCHHHHHH-HHhCCCC----CC-ceEEEECCEECC
Confidence            46799999999999995 5555533    33 577788887763

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=97.61  E-value=3.1e-05  Score=50.14  Aligned_cols=27  Identities=26%  Similarity=0.455  Sum_probs=24.4

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      ..++|+++|++|+|||||+++++...+
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~~   64 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGERV   64 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCCc
Confidence            479999999999999999999987765

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=97.60  E-value=6.3e-05  Score=48.48  Aligned_cols=38  Identities=21%  Similarity=0.349  Sum_probs=26.7

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      .+.++|++|+|||||++ .+.+...    ++ .+.+.++|+++.
T Consensus        30 ~~~i~G~nGsGKSTLl~-~l~Gl~~----p~-~G~i~~~g~~~~   67 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFS-LLERFYQ----PT-AGEITIDGQPID   67 (243)
T ss_dssp             EEEEECCTTSSHHHHHH-HHTTSSC----CS-BSCEEETTEEST
T ss_pred             EEEEECCCCCCHHHHHH-HHhcCCC----CC-CcEEEECCEEhh
Confidence            47899999999999995 5555533    22 456667776653

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=97.59  E-value=6.5e-05  Score=48.86  Aligned_cols=36  Identities=28%  Similarity=0.388  Sum_probs=27.0

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR   73 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~   73 (76)
                      .+.++|++|+|||||++ .+.+..    .++  +++.++|+++
T Consensus        28 ~~~liG~NGsGKSTLlk-~l~Gl~----~p~--G~i~~~g~~~   63 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLA-RMAGMT----SGK--GSIQFAGQPL   63 (249)
T ss_dssp             EEEEECCTTSSHHHHHH-HHTTSS----CCE--EEEEETTEEG
T ss_pred             EEEEECCCCCcHHHHHH-HHhCCC----CCC--eEEEECCEEC
Confidence            36799999999999995 555553    355  6778888765

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=97.58  E-value=0.00011  Score=48.41  Aligned_cols=37  Identities=24%  Similarity=0.337  Sum_probs=27.7

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      +.|+|++|+|||||++ .+.+...    ++ .+++.++|+++.
T Consensus        50 ~~liG~NGsGKSTLlk-~l~Gl~~----p~-~G~I~~~g~~~~   86 (279)
T 2ihy_A           50 WILYGLNGAGKTTLLN-ILNAYEP----AT-SGTVNLFGKMPG   86 (279)
T ss_dssp             EEEECCTTSSHHHHHH-HHTTSSC----CS-EEEEEETTBCCC
T ss_pred             EEEECCCCCcHHHHHH-HHhCCCC----CC-CeEEEECCEEcc
Confidence            6799999999999995 5555533    33 577888887764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=97.58  E-value=6.5e-05  Score=51.19  Aligned_cols=38  Identities=24%  Similarity=0.430  Sum_probs=28.6

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      .+.++|++|||||||+ +.+.+...    ++ .+++.++|+++.
T Consensus        28 ~~~llGpnGsGKSTLL-r~iaGl~~----p~-~G~I~~~g~~i~   65 (348)
T 3d31_A           28 YFVILGPTGAGKTLFL-ELIAGFHV----PD-SGRILLDGKDVT   65 (348)
T ss_dssp             EEEEECCCTHHHHHHH-HHHHTSSC----CS-EEEEEETTEECT
T ss_pred             EEEEECCCCccHHHHH-HHHHcCCC----CC-CcEEEECCEECC
Confidence            3679999999999999 46656533    33 577888888764

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=97.57  E-value=9.1e-05  Score=48.60  Aligned_cols=37  Identities=24%  Similarity=0.419  Sum_probs=27.5

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      +.|+|++|+|||||++ .+.+...    |+ .+.+.++|+++.
T Consensus        48 ~~i~G~nGsGKSTLlk-~l~Gl~~----p~-~G~I~~~g~~i~   84 (271)
T 2ixe_A           48 TALVGPNGSGKSTVAA-LLQNLYQ----PT-GGKVLLDGEPLV   84 (271)
T ss_dssp             EEEECSTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEEGG
T ss_pred             EEEECCCCCCHHHHHH-HHhcCCC----CC-CCEEEECCEEcc
Confidence            6799999999999995 5555533    33 577888887753

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=97.56  E-value=0.00011  Score=48.20  Aligned_cols=36  Identities=22%  Similarity=0.222  Sum_probs=27.1

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR   73 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~   73 (76)
                      +.|+|++|+|||||++ .+.+...    |+ .+++.++|+++
T Consensus        53 ~~liG~NGsGKSTLlk-~l~Gl~~----p~-~G~I~~~g~~i   88 (263)
T 2olj_A           53 VVVIGPSGSGKSTFLR-CLNLLED----FD-EGEIIIDGINL   88 (263)
T ss_dssp             EEEECCTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEES
T ss_pred             EEEEcCCCCcHHHHHH-HHHcCCC----CC-CcEEEECCEEC
Confidence            6799999999999995 5555532    33 57788888776

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=97.52  E-value=8.9e-05  Score=50.89  Aligned_cols=36  Identities=25%  Similarity=0.407  Sum_probs=26.7

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR   73 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~   73 (76)
                      +.++|++|||||||+ +.+.+...    ++ .+++.++|+++
T Consensus        32 ~~llGpnGsGKSTLL-r~iaGl~~----p~-~G~I~i~g~~~   67 (372)
T 1g29_1           32 MILLGPSGCGKTTTL-RMIAGLEE----PS-RGQIYIGDKLV   67 (372)
T ss_dssp             EEEECSTTSSHHHHH-HHHHTSSC----CS-EEEEEETTEEE
T ss_pred             EEEECCCCcHHHHHH-HHHHcCCC----CC-ccEEEECCEEC
Confidence            679999999999999 46656533    33 56777777765

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.49  E-value=0.00013  Score=46.45  Aligned_cols=36  Identities=17%  Similarity=0.197  Sum_probs=26.1

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR   73 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~   73 (76)
                      +.++|++|+|||||++ .+.+...    ++ .+++.++|+++
T Consensus        38 ~~iiG~NGsGKSTLlk-~l~Gl~~----p~-~G~I~~~g~~~   73 (214)
T 1sgw_A           38 VNFHGPNGIGKTTLLK-TISTYLK----PL-KGEIIYNGVPI   73 (214)
T ss_dssp             EEEECCTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEEG
T ss_pred             EEEECCCCCCHHHHHH-HHhcCCC----CC-CeEEEECCEEh
Confidence            6799999999999995 5555532    33 56777777654

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=97.48  E-value=0.00018  Score=46.91  Aligned_cols=37  Identities=19%  Similarity=0.358  Sum_probs=27.2

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      +.|+|++|+|||||++ .+.+...    |+ .+++.++|+++.
T Consensus        44 ~~l~G~NGsGKSTLlk-~l~Gl~~----p~-~G~I~~~g~~~~   80 (256)
T 1vpl_A           44 FGLIGPNGAGKTTTLR-IISTLIK----PS-SGIVTVFGKNVV   80 (256)
T ss_dssp             EEEECCTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEETT
T ss_pred             EEEECCCCCCHHHHHH-HHhcCCC----CC-ceEEEECCEECC
Confidence            6799999999999995 5555532    33 577788887653

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=97.47  E-value=3.4e-05  Score=53.29  Aligned_cols=27  Identities=33%  Similarity=0.417  Sum_probs=24.5

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      ..+|++++|+++||||||+++++...+
T Consensus       174 ~~~ki~lvG~~nvGKSSLin~l~~~~~  200 (436)
T 2hjg_A          174 EVIQFCLIGRPNVGKSSLVNAMLGEER  200 (436)
T ss_dssp             TCEEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred             cCcEEEEEcCCCCCHHHHHHHHhCCCc
Confidence            468999999999999999999998765

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=97.47  E-value=0.00018  Score=46.97  Aligned_cols=37  Identities=30%  Similarity=0.434  Sum_probs=27.1

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR   73 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~   73 (76)
                      .+.++|++|+|||||++ .+.+...    ++ .+++.++|+++
T Consensus        35 ~~~liG~nGsGKSTLl~-~i~Gl~~----p~-~G~I~~~g~~~   71 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQ-IVAGLIE----PT-SGDVLYDGERK   71 (266)
T ss_dssp             EEEEECSTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEEC
T ss_pred             EEEEECCCCCcHHHHHH-HHhCCCC----CC-CcEEEECCEEC
Confidence            36799999999999995 5555532    33 57777888765

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=97.46  E-value=3e-05  Score=48.12  Aligned_cols=28  Identities=18%  Similarity=0.223  Sum_probs=23.5

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFH   55 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~   55 (76)
                      ...+++++|..|+|||||+.+++...+.
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~   56 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGN   56 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence            4578999999999999999998875443

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=97.43  E-value=0.00016  Score=47.07  Aligned_cols=37  Identities=19%  Similarity=0.383  Sum_probs=27.6

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      .+.++|++|+|||||++ .+.+...    +  .+.+.++|+++.
T Consensus        48 ~~~i~G~nGsGKSTLl~-~l~Gl~~----~--~G~I~i~g~~i~   84 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAK-LLYRFYD----A--EGDIKIGGKNVN   84 (260)
T ss_dssp             EEEEECSTTSSHHHHHH-HHTTSSC----C--EEEEEETTEEGG
T ss_pred             EEEEECCCCCCHHHHHH-HHhccCC----C--CeEEEECCEEhh
Confidence            47899999999999995 5555532    2  478888887753

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=97.41  E-value=9.2e-05  Score=49.14  Aligned_cols=28  Identities=21%  Similarity=0.324  Sum_probs=24.6

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFH   55 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~   55 (76)
                      ...+++++|.++||||||+++++...+.
T Consensus         6 ~~g~V~ivG~~nvGKSTLln~l~g~~~~   33 (301)
T 1wf3_A            6 YSGFVAIVGKPNVGKSTLLNNLLGVKVA   33 (301)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred             cCCEEEEECCCCCCHHHHHHHHhCCcee
Confidence            4567999999999999999999987764

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=97.39  E-value=8.9e-05  Score=50.55  Aligned_cols=36  Identities=22%  Similarity=0.255  Sum_probs=26.6

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR   73 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~   73 (76)
                      +.++|++|||||||++ .+.+...    ++ .+++.++|+++
T Consensus        34 ~~llGpnGsGKSTLLr-~iaGl~~----p~-~G~I~i~g~~i   69 (353)
T 1oxx_K           34 FGILGPSGAGKTTFMR-IIAGLDV----PS-TGELYFDDRLV   69 (353)
T ss_dssp             EEEECSCHHHHHHHHH-HHHTSSC----CS-EEEEEETTEEE
T ss_pred             EEEECCCCCcHHHHHH-HHhCCCC----CC-ceEEEECCEEC
Confidence            6799999999999994 6656533    33 56777777765

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=97.39  E-value=0.00025  Score=45.85  Aligned_cols=39  Identities=23%  Similarity=0.227  Sum_probs=27.8

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      +.++|++|+|||||++ .+.+..  .+.++ .+++.++|+++.
T Consensus        32 ~~l~G~nGsGKSTLlk-~l~Gl~--~~~p~-~G~I~~~g~~~~   70 (250)
T 2d2e_A           32 HALMGPNGAGKSTLGK-ILAGDP--EYTVE-RGEILLDGENIL   70 (250)
T ss_dssp             EEEECSTTSSHHHHHH-HHHTCT--TCEEE-EEEEEETTEECT
T ss_pred             EEEECCCCCCHHHHHH-HHhCCC--CCCCC-ceEEEECCEECC
Confidence            6799999999999995 555541  12233 577888888764

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=97.38  E-value=0.00016  Score=47.88  Aligned_cols=32  Identities=19%  Similarity=0.320  Sum_probs=26.1

Q ss_pred             ccccceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355          24 QAKICQYKLVLLGESAVGKSSLVLRFVRGQFH   55 (76)
Q Consensus        24 ~~~~~~~kivllG~~~vGKtsl~~~~~~~~f~   55 (76)
                      ..+...-+|.++|.++||||||+++++...+.
T Consensus         5 ~~~~~~g~v~ivG~~nvGKSTLin~l~g~~~~   36 (308)
T 3iev_A            5 HHHMKVGYVAIVGKPNVGKSTLLNNLLGTKVS   36 (308)
T ss_dssp             --CCEEEEEEEECSTTSSHHHHHHHHHTSCCS
T ss_pred             CCCCCCCEEEEECCCCCcHHHHHHHHhCCCcc
Confidence            34455779999999999999999999987765

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=97.37  E-value=0.00013  Score=49.15  Aligned_cols=27  Identities=26%  Similarity=0.379  Sum_probs=23.8

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFH   55 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~   55 (76)
                      ..+|+|+|++++|||||+++++...|.
T Consensus        34 lp~I~vvG~~~sGKSSLln~l~g~~~l   60 (360)
T 3t34_A           34 LPAIAVVGGQSSGKSSVLESIVGKDFL   60 (360)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHTSCCS
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCcC
Confidence            449999999999999999999987764

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.36  E-value=8.5e-05  Score=45.41  Aligned_cols=21  Identities=33%  Similarity=0.596  Sum_probs=18.1

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .++|+|++|+|||||++.+..
T Consensus         7 ~i~i~GpsGsGKSTL~~~L~~   27 (180)
T 1kgd_A            7 TLVLLGAHGVGRRHIKNTLIT   27 (180)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            578999999999999976654

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.36  E-value=0.00021  Score=51.37  Aligned_cols=38  Identities=26%  Similarity=0.402  Sum_probs=29.0

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      ++.++|++|+|||||++ .+.+.+    .|+ .+++.++|+|+.
T Consensus       383 ~~~ivG~sGsGKSTll~-~l~g~~----~p~-~G~i~~~g~~i~  420 (598)
T 3qf4_B          383 KVALVGPTGSGKTTIVN-LLMRFY----DVD-RGQILVDGIDIR  420 (598)
T ss_dssp             EEEEECCTTSSTTHHHH-HHTTSS----CCS-EEEEEETTEEGG
T ss_pred             EEEEECCCCCcHHHHHH-HHhcCc----CCC-CeEEEECCEEhh
Confidence            57899999999999995 555553    343 578889998765

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=97.35  E-value=0.00022  Score=50.92  Aligned_cols=39  Identities=23%  Similarity=0.398  Sum_probs=29.2

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      ++.++|++|+|||||++ .+.+..    .|+ .+++.++|+++..
T Consensus       371 ~~~ivG~sGsGKSTLl~-~l~g~~----~p~-~G~i~~~g~~~~~  409 (582)
T 3b60_A          371 TVALVGRSGSGKSTIAS-LITRFY----DID-EGHILMDGHDLRE  409 (582)
T ss_dssp             EEEEEECTTSSHHHHHH-HHTTTT----CCS-EEEEEETTEETTT
T ss_pred             EEEEECCCCCCHHHHHH-HHhhcc----CCC-CCeEEECCEEccc
Confidence            47899999999999995 554543    343 5788899988753

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=97.34  E-value=0.00018  Score=51.42  Aligned_cols=38  Identities=24%  Similarity=0.399  Sum_probs=28.6

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      ++.++|++|+|||||++ .+.+.+    .|+ .+++.++|+|+.
T Consensus       369 ~~~ivG~sGsGKSTll~-~l~g~~----~p~-~G~i~~~g~~~~  406 (578)
T 4a82_A          369 TVAFVGMSGGGKSTLIN-LIPRFY----DVT-SGQILIDGHNIK  406 (578)
T ss_dssp             EEEEECSTTSSHHHHHT-TTTTSS----CCS-EEEEEETTEEGG
T ss_pred             EEEEECCCCChHHHHHH-HHhcCC----CCC-CcEEEECCEEhh
Confidence            46799999999999995 444443    344 578889998765

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=97.33  E-value=0.00027  Score=46.28  Aligned_cols=36  Identities=25%  Similarity=0.457  Sum_probs=26.4

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR   73 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~   73 (76)
                      .+.++|++|+|||||++ .+.+..     |+ .+.+.++|+++
T Consensus        32 ~~~i~G~NGsGKSTLlk-~l~Gl~-----p~-~G~I~~~g~~~   67 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLR-AISGLL-----PY-SGNIFINGMEV   67 (263)
T ss_dssp             EEEEECCTTSSHHHHHH-HHTTSS-----CC-EEEEEETTEEG
T ss_pred             EEEEECCCCCCHHHHHH-HHhCCC-----CC-CcEEEECCEEC
Confidence            57899999999999995 555553     22 56777777654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=97.33  E-value=0.00016  Score=49.60  Aligned_cols=40  Identities=18%  Similarity=0.163  Sum_probs=26.1

Q ss_pred             cceeeEEEECCCCCcchhhhhhhh---hCcCCCcCCC--ceeEEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFV---RGQFHEYQES--TIGGCG   66 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~---~~~f~~~~~~--tig~~~   66 (76)
                      ...++|+++|..++|||||+.+++   .+.+.+.+.+  |+...|
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~   50 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVWTDRHSEELRRGISIRLGY   50 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCCCCC-------CCCCCCEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCccccCcccccCCcEEEecc
Confidence            357899999999999999999887   3344444444  665443

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=97.31  E-value=5.5e-05  Score=52.30  Aligned_cols=25  Identities=28%  Similarity=0.522  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      .+|+++|.++||||||++|++...+
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~~   26 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKKK   26 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCC
Confidence            4799999999999999999997653

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=97.28  E-value=0.00023  Score=51.08  Aligned_cols=38  Identities=26%  Similarity=0.382  Sum_probs=28.8

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      ++.++|++|+|||||++ .+.+.+    .++ .+++.++|+|+.
T Consensus       371 ~~~ivG~sGsGKSTll~-~l~g~~----~~~-~G~i~i~g~~i~  408 (587)
T 3qf4_A          371 LVAVLGETGSGKSTLMN-LIPRLI----DPE-RGRVEVDELDVR  408 (587)
T ss_dssp             EEEEECSSSSSHHHHHH-TTTTSS----CCS-EEEEEESSSBGG
T ss_pred             EEEEECCCCCCHHHHHH-HHhCCc----cCC-CcEEEECCEEcc
Confidence            47899999999999995 554443    343 678889998875

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.28  E-value=0.00011  Score=45.67  Aligned_cols=20  Identities=40%  Similarity=0.624  Sum_probs=17.4

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .++|+|++|+|||||++.+.
T Consensus         6 ~i~lvGpsGaGKSTLl~~L~   25 (198)
T 1lvg_A            6 PVVLSGPSGAGKSTLLKKLF   25 (198)
T ss_dssp             CEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58899999999999996554

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.28  E-value=0.00012  Score=45.95  Aligned_cols=20  Identities=35%  Similarity=0.619  Sum_probs=18.0

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      |||+|++|+||+||+++++.
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~   23 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999987764

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=97.27  E-value=0.00029  Score=46.08  Aligned_cols=39  Identities=31%  Similarity=0.451  Sum_probs=27.4

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      +.|+|++|+|||||++ .+.+...  +.++ .+.+.++|+++.
T Consensus        49 ~~l~G~NGsGKSTLlk-~l~Gl~~--~~p~-~G~I~~~g~~i~   87 (267)
T 2zu0_C           49 HAIMGPNGSGKSTLSA-TLAGRED--YEVT-GGTVEFKGKDLL   87 (267)
T ss_dssp             EEEECCTTSSHHHHHH-HHHTCTT--CEEE-EEEEEETTEEGG
T ss_pred             EEEECCCCCCHHHHHH-HHhCCCC--CCCC-CeEEEECCEECC
Confidence            6799999999999995 5555421  2233 577888887653

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.26  E-value=0.00014  Score=44.91  Aligned_cols=20  Identities=45%  Similarity=0.838  Sum_probs=17.2

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      ++.++|++|+|||||++.++
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~   21 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIV   21 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68899999999999996444

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.26  E-value=0.00022  Score=55.37  Aligned_cols=39  Identities=28%  Similarity=0.430  Sum_probs=29.6

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      |+.++|++|+|||||+. .+.+.    |+|+ .+.+.++|.|+..
T Consensus      1107 ~vaIVG~SGsGKSTL~~-lL~rl----~~p~-~G~I~iDG~di~~ 1145 (1321)
T 4f4c_A         1107 TLALVGPSGCGKSTVVA-LLERF----YDTL-GGEIFIDGSEIKT 1145 (1321)
T ss_dssp             EEEEECSTTSSTTSHHH-HHTTS----SCCS-SSEEEETTEETTT
T ss_pred             EEEEECCCCChHHHHHH-HHhcC----ccCC-CCEEEECCEEhhh
Confidence            57899999999999995 44333    3344 4678899998865

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=97.23  E-value=8e-05  Score=51.89  Aligned_cols=30  Identities=27%  Similarity=0.298  Sum_probs=23.3

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      .....+||+++|+.++|||||+++++...+
T Consensus        30 ~~~~~~kI~IvG~~~vGKSTLin~L~~~~~   59 (423)
T 3qq5_A           30 DAGFRRYIVVAGRRNVGKSSFMNALVGQNV   59 (423)
T ss_dssp             --CCCEEEEEECSCSTTTTTTTTSSCC---
T ss_pred             CCCCCEEEEEECCCCCCHHHHHHHHHcCCC
Confidence            345689999999999999999999988776

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=97.21  E-value=9.4e-05  Score=52.15  Aligned_cols=26  Identities=23%  Similarity=0.339  Sum_probs=21.2

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      ..+||+++|++++|||||+++++...
T Consensus       232 ~~~kV~ivG~~nvGKSSLln~L~~~~  257 (476)
T 3gee_A          232 EGVSTVIAGKPNAGKSTLLNTLLGQE  257 (476)
T ss_dssp             HCEEEEEECCTTSSHHHHHHHCC---
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence            35899999999999999999998764

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=97.21  E-value=0.00025  Score=50.73  Aligned_cols=38  Identities=24%  Similarity=0.405  Sum_probs=27.3

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      ++.++|++|+|||||++ .+.+.+.    |+ .+++.++|+++.
T Consensus       371 ~~~ivG~sGsGKSTll~-~l~g~~~----p~-~G~i~~~g~~~~  408 (582)
T 3b5x_A          371 TVALVGRSGSGKSTIAN-LFTRFYD----VD-SGSICLDGHDVR  408 (582)
T ss_pred             EEEEECCCCCCHHHHHH-HHhcCCC----CC-CCEEEECCEEhh
Confidence            47899999999999995 5545432    33 466778887664

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=97.20  E-value=0.00011  Score=50.72  Aligned_cols=27  Identities=22%  Similarity=0.413  Sum_probs=23.6

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFH   55 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~   55 (76)
                      ..+|+++|.++||||||+++++...+.
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~~~~   29 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGERIS   29 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEEECC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCce
Confidence            368999999999999999999876653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=97.19  E-value=0.00027  Score=48.38  Aligned_cols=39  Identities=18%  Similarity=0.189  Sum_probs=28.1

Q ss_pred             cceeeEEEECCCCCcchhhhhhhh---hCcCCCcCCC--ceeEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFV---RGQFHEYQES--TIGGC   65 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~---~~~f~~~~~~--tig~~   65 (76)
                      ...++|+++|..++|||||+.+++   .+.+.+.+.+  |+...
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~   51 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIG   51 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEe
Confidence            457899999999999999999987   3344544444  66444

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=97.18  E-value=0.00026  Score=48.22  Aligned_cols=25  Identities=20%  Similarity=0.206  Sum_probs=20.8

Q ss_pred             ee-EEEECCCCCcchhhhhhhhhCcC
Q psy1355          30 YK-LVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        30 ~k-ivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      ++ ++++|++|+|||||+++++...+
T Consensus       179 ~~~V~lvG~~naGKSTLln~L~~~~~  204 (364)
T 2qtf_A          179 IPSIGIVGYTNSGKTSLFNSLTGLTQ  204 (364)
T ss_dssp             CCEEEEECBTTSSHHHHHHHHHCC--
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCCCc
Confidence            45 88999999999999999887665

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=97.15  E-value=0.00019  Score=47.42  Aligned_cols=26  Identities=23%  Similarity=0.406  Sum_probs=22.9

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      ..+++++|++++|||||+++++...+
T Consensus         8 ~~~VaIvG~~nvGKSTLln~L~g~~~   33 (301)
T 1ega_A            8 CGFIAIVGRPNVGKSTLLNKLLGQKI   33 (301)
T ss_dssp             EEEEEEECSSSSSHHHHHHHHHTCSE
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCc
Confidence            45799999999999999999987655

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=97.14  E-value=0.00023  Score=47.86  Aligned_cols=29  Identities=28%  Similarity=0.458  Sum_probs=25.3

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFH   55 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~   55 (76)
                      ....+|+|+|+.++|||||+++++...|.
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~   57 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFL   57 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCS
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcC
Confidence            34679999999999999999999987763

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.14  E-value=0.00051  Score=44.09  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=18.2

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      .+.++|++|+|||||++ .+.+..
T Consensus        33 ~~~i~G~nGsGKSTLl~-~l~Gl~   55 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLS-ALLAEM   55 (237)
T ss_dssp             EEEEECSTTSSHHHHHH-HHTTCS
T ss_pred             EEEEECCCCCCHHHHHH-HHhcCC
Confidence            46899999999999995 554543

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=97.13  E-value=0.00012  Score=50.85  Aligned_cols=27  Identities=22%  Similarity=0.413  Sum_probs=23.9

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFH   55 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~   55 (76)
                      ..+|+++|.++||||||+++++...+.
T Consensus        23 ~~~V~lvG~~nvGKSTL~n~l~~~~~~   49 (456)
T 4dcu_A           23 KPVVAIVGRPNVGKSTIFNRIAGERIS   49 (456)
T ss_dssp             CCEEEEECSSSSSHHHHHHHHEEEEEC
T ss_pred             CCEEEEECCCCCcHHHHHHHHhCCCCc
Confidence            579999999999999999999876654

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=97.13  E-value=0.00053  Score=53.30  Aligned_cols=39  Identities=23%  Similarity=0.362  Sum_probs=30.2

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      ++.++|++|+|||||++ .+.+.    |+++ .+.+.++|.|+.+
T Consensus       446 ~vaivG~sGsGKSTll~-ll~~~----~~~~-~G~I~idG~~i~~  484 (1321)
T 4f4c_A          446 TVALVGSSGCGKSTIIS-LLLRY----YDVL-KGKITIDGVDVRD  484 (1321)
T ss_dssp             EEEEEECSSSCHHHHHH-HHTTS----SCCS-EEEEEETTEETTT
T ss_pred             EEEEEecCCCcHHHHHH-Hhccc----cccc-cCcccCCCccchh
Confidence            47899999999999995 55444    3444 6788999998765

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.12  E-value=0.00018  Score=43.73  Aligned_cols=18  Identities=39%  Similarity=0.641  Sum_probs=15.9

Q ss_pred             eEEEECCCCCcchhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLR   48 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~   48 (76)
                      -++++|++|+|||||++.
T Consensus        11 i~~l~G~nGsGKSTl~~~   28 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKK   28 (171)
T ss_dssp             EEEEECCTTSCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHH
Confidence            467999999999999974

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.12  E-value=0.00021  Score=45.24  Aligned_cols=21  Identities=38%  Similarity=0.626  Sum_probs=18.1

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .++|+|++|+|||||++.++.
T Consensus        21 ~ivl~GPSGaGKsTL~~~L~~   41 (197)
T 3ney_A           21 TLVLIGASGVGRSHIKNALLS   41 (197)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            478999999999999977664

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=97.12  E-value=0.00025  Score=48.65  Aligned_cols=25  Identities=28%  Similarity=0.462  Sum_probs=22.2

Q ss_pred             eeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      +|++++|.++||||||+++++...+
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~~   27 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAGI   27 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC-
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCCC
Confidence            6899999999999999999987664

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.12  E-value=0.00022  Score=43.70  Aligned_cols=21  Identities=33%  Similarity=0.520  Sum_probs=17.5

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .++|+|++|+|||||++.+..
T Consensus         9 ii~l~Gp~GsGKSTl~~~L~~   29 (205)
T 3tr0_A            9 LFIISAPSGAGKTSLVRALVK   29 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            478999999999999965553

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=97.12  E-value=0.00012  Score=50.83  Aligned_cols=28  Identities=25%  Similarity=0.281  Sum_probs=22.2

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      ...+++.++|.++||||||+++++...+
T Consensus        20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~~   47 (396)
T 2ohf_A           20 GTSLKIGIVGLPNVGKSTFFNVLTNSQA   47 (396)
T ss_dssp             SSCCCEEEECCSSSSHHHHHHHHHC---
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence            3458999999999999999998887654

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.12  E-value=0.00021  Score=45.51  Aligned_cols=21  Identities=29%  Similarity=0.463  Sum_probs=17.7

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|+|++|+|||||++.+..
T Consensus        18 ii~l~GpsGsGKSTLlk~L~g   38 (219)
T 1s96_A           18 LYIVSAPSGAGKSSLIQALLK   38 (219)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999976553

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=97.11  E-value=0.00072  Score=43.16  Aligned_cols=23  Identities=30%  Similarity=0.680  Sum_probs=18.2

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      .+.++|++|+|||||++ .+.+..
T Consensus        36 ~~~i~G~nGsGKSTLl~-~l~Gl~   58 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLM-MIMGEL   58 (229)
T ss_dssp             EEEEECCTTSSHHHHHH-HHTTSS
T ss_pred             EEEEECCCCCCHHHHHH-HHhCCC
Confidence            46799999999999995 555553

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=97.11  E-value=0.00026  Score=46.25  Aligned_cols=28  Identities=29%  Similarity=0.464  Sum_probs=24.7

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      ....+|+|+|+.++|||||+++++...+
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~   49 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDF   49 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCc
Confidence            4467999999999999999999987765

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=97.11  E-value=0.0006  Score=47.33  Aligned_cols=25  Identities=24%  Similarity=0.368  Sum_probs=22.0

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhh
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~   50 (76)
                      ....++++++|..++|||||+.+++
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll   38 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIM   38 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHH
Confidence            3457899999999999999999884

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.10  E-value=0.00022  Score=44.33  Aligned_cols=20  Identities=50%  Similarity=0.564  Sum_probs=16.7

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .++|+|++|+|||||++.+.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~   41 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLR   41 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999996443

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=97.08  E-value=0.00027  Score=47.61  Aligned_cols=27  Identities=26%  Similarity=0.322  Sum_probs=23.7

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      ..++++++|++|||||||+++++...+
T Consensus       166 ~~~~v~lvG~~gvGKSTLin~L~~~~~  192 (357)
T 2e87_A          166 EIPTVVIAGHPNVGKSTLLKALTTAKP  192 (357)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHCSSCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            467999999999999999999887654

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.07  E-value=0.00024  Score=44.78  Aligned_cols=21  Identities=38%  Similarity=0.695  Sum_probs=17.5

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .++|+|++|+|||||++.+..
T Consensus        25 ~~~lvGpsGsGKSTLl~~L~g   45 (218)
T 1z6g_A           25 PLVICGPSGVGKGTLIKKLLN   45 (218)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            478999999999999965543

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=97.06  E-value=0.00024  Score=49.91  Aligned_cols=27  Identities=30%  Similarity=0.461  Sum_probs=23.5

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      ..+||+++|++++|||||+++++...+
T Consensus       223 ~~~kV~ivG~~nvGKSSLln~L~~~~~  249 (462)
T 3geh_A          223 TGLKVAIVGRPNVGKSSLLNAWSQSDR  249 (462)
T ss_dssp             HCEEEEEEECTTSSHHHHHHHHHHHHB
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCCCc
Confidence            468999999999999999999987643

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.05  E-value=0.00027  Score=44.10  Aligned_cols=21  Identities=33%  Similarity=0.464  Sum_probs=18.1

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|+|++|+|||||++.+..
T Consensus        10 ~i~l~GpsGsGKsTl~~~L~~   30 (208)
T 3tau_A           10 LIVLSGPSGVGKGTVREAVFK   30 (208)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECcCCCCHHHHHHHHHh
Confidence            478899999999999977664

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=97.03  E-value=0.00046  Score=47.20  Aligned_cols=27  Identities=19%  Similarity=0.187  Sum_probs=23.5

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhC
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      ....+||+++|+.++|||||+++++..
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~   31 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGI   31 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCc
Confidence            345799999999999999999998863

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=97.01  E-value=0.00034  Score=45.63  Aligned_cols=25  Identities=16%  Similarity=0.401  Sum_probs=22.0

Q ss_pred             eeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      ++++++|.++||||||++++....+
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~~~  124 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGKRA  124 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcccc
Confidence            6999999999999999998886544

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=97.01  E-value=6e-05  Score=54.02  Aligned_cols=37  Identities=16%  Similarity=0.261  Sum_probs=29.0

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC   65 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~   65 (76)
                      ..+|+++|+.++|||||+.++....+...+.+++..+
T Consensus         4 ~pkV~IvG~~~vGKTSLl~~L~~~~~~~~~~~giT~~   40 (537)
T 3izy_P            4 SPVVTIMGHVDHGKTTLLDKLRKTQVAAMEAGGITQH   40 (537)
T ss_dssp             CCBCEEEESTTTTHHHHHHHHHHHHHHHSSSCCBCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCCcccccCCceeEE
Confidence            5689999999999999999998776655555555444

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=96.97  E-value=0.00032  Score=42.53  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=17.9

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .++++|++|+||||+++.+..
T Consensus        11 ~i~l~G~~GsGKSTl~~~La~   31 (191)
T 1zp6_A           11 ILLLSGHPGSGKSTIAEALAN   31 (191)
T ss_dssp             EEEEEECTTSCHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHh
Confidence            588999999999999976654

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.94  E-value=0.00079  Score=52.20  Aligned_cols=38  Identities=26%  Similarity=0.519  Sum_probs=28.8

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      ++.++|++|+|||||++ .+.+.+    .++ .+.+.++|+|+.
T Consensus       418 ~~~ivG~sGsGKSTl~~-ll~g~~----~~~-~G~i~i~g~~i~  455 (1284)
T 3g5u_A          418 TVALVGNSGCGKSTTVQ-LMQRLY----DPL-DGMVSIDGQDIR  455 (1284)
T ss_dssp             EEEEECCSSSSHHHHHH-HTTTSS----CCS-EEEEEETTEEGG
T ss_pred             EEEEECCCCCCHHHHHH-HHhCCC----CCC-CeEEEECCEEHH
Confidence            47899999999999994 554443    343 578889998764

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=96.92  E-value=0.00062  Score=44.98  Aligned_cols=22  Identities=36%  Similarity=0.297  Sum_probs=17.9

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      -.+.++|++|+|||||++.+..
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g  191 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINP  191 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHST
T ss_pred             CeEEEECCCCCcHHHHHHHhcc
Confidence            3578999999999999965553

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=96.91  E-value=0.0005  Score=42.73  Aligned_cols=22  Identities=27%  Similarity=0.345  Sum_probs=18.3

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      -..+.|+|++|+|||||++.+.
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~   43 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLA   43 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4678899999999999996443

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=96.90  E-value=0.00021  Score=50.47  Aligned_cols=26  Identities=31%  Similarity=0.588  Sum_probs=23.0

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      .+||+++|.+++|||||+++++...+
T Consensus       243 ~~kV~ivG~pnvGKSSLln~L~~~~~  268 (482)
T 1xzp_A          243 GLRMVIVGKPNVGKSTLLNRLLNEDR  268 (482)
T ss_dssp             CEEEEEECCHHHHTCHHHHHHHHHTB
T ss_pred             CCEEEEECcCCCcHHHHHHHHHCCCC
Confidence            38999999999999999999987653

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=96.89  E-value=0.00046  Score=42.74  Aligned_cols=22  Identities=36%  Similarity=0.566  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-++|+|++|+|||||.+++..
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~   34 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLS   34 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999977654

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=96.88  E-value=0.00042  Score=48.51  Aligned_cols=27  Identities=30%  Similarity=0.483  Sum_probs=23.3

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhC
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      ....+||+++|..++|||||+.+++..
T Consensus        30 ~k~~~ki~iiG~~~~GKSTLi~~Ll~~   56 (483)
T 3p26_A           30 ALPHLSFVVLGHVDAGKSTLMGRLLYD   56 (483)
T ss_dssp             SCCEEEEEEESCGGGTHHHHHHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHHh
Confidence            345799999999999999999998754

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=96.84  E-value=0.00058  Score=47.37  Aligned_cols=27  Identities=33%  Similarity=0.423  Sum_probs=23.6

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      ...+|++++|++++|||||+++++...
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~~  219 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGEE  219 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCCC
Confidence            457899999999999999999998653

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=96.81  E-value=0.0005  Score=47.39  Aligned_cols=24  Identities=21%  Similarity=0.299  Sum_probs=20.5

Q ss_pred             eeEEEECCCCCcchhhhhhhhhCc
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      +|++++|.++||||||+++++...
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~   24 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD   24 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC
Confidence            589999999999999999988765

>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*

Probab=96.81  E-value=0.0014  Score=50.78  Aligned_cols=39  Identities=26%  Similarity=0.486  Sum_probs=29.6

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      ++.++|++|+|||||++ .+.+.+    .++ .+.+.++|+|+..
T Consensus      1061 ~v~ivG~sGsGKSTl~~-~l~g~~----~p~-~G~I~i~g~~i~~ 1099 (1284)
T 3g5u_A         1061 TLALVGSSGCGKSTVVQ-LLERFY----DPM-AGSVFLDGKEIKQ 1099 (1284)
T ss_dssp             EEEEECSSSTTHHHHHH-HHTTSS----CCS-EEEEESSSSCTTS
T ss_pred             EEEEECCCCCCHHHHHH-HHhcCc----CCC-CCEEEECCEEccc
Confidence            47899999999999995 554443    343 6788999988764

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.80  E-value=0.0014  Score=43.51  Aligned_cols=22  Identities=32%  Similarity=0.681  Sum_probs=17.7

Q ss_pred             eEEEECCCCCcchhhhhhhhhCc
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      .+.++|++|+|||||++ .+.+.
T Consensus        66 ~~~i~G~NGsGKSTLlk-~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLM-MIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHH-HHTTS
T ss_pred             EEEEECCCCCcHHHHHH-HHhcC
Confidence            36799999999999995 55454

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.80  E-value=0.00049  Score=43.29  Aligned_cols=20  Identities=30%  Similarity=0.468  Sum_probs=13.4

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .++|+|++|+|||||++.+.
T Consensus        29 ii~l~Gp~GsGKSTl~~~L~   48 (231)
T 3lnc_A           29 ILVLSSPSGCGKTTVANKLL   48 (231)
T ss_dssp             EEEEECSCC----CHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999997665

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.79  E-value=0.00066  Score=40.21  Aligned_cols=21  Identities=19%  Similarity=0.333  Sum_probs=18.1

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .|+|+|.+|+||||+.+.+..
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~   23 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSK   23 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999976654

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=96.79  E-value=0.00069  Score=47.43  Aligned_cols=23  Identities=26%  Similarity=0.576  Sum_probs=19.2

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .|++.|+|++|+|||||++.++.
T Consensus        42 i~~vaLvG~nGaGKSTLln~L~G   64 (427)
T 2qag_B           42 CFNILCVGETGLGKSTLMDTLFN   64 (427)
T ss_dssp             EEEEEEECSTTSSSHHHHHHHHT
T ss_pred             eeEEEEECCCCCCHHHHHHHHhC
Confidence            35699999999999999976554

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=96.77  E-value=0.00064  Score=41.52  Aligned_cols=21  Identities=38%  Similarity=0.537  Sum_probs=18.0

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .++|+|++|+||||+++.+..
T Consensus         8 ~i~l~G~~GsGKSTl~~~L~~   28 (207)
T 2j41_A            8 LIVLSGPSGVGKGTVRKRIFE   28 (207)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999976554

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.76  E-value=0.00056  Score=42.31  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=18.0

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .+.|+|++|+|||||++.++.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g   47 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAV   47 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999977664

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=96.75  E-value=0.0012  Score=47.15  Aligned_cols=29  Identities=14%  Similarity=0.254  Sum_probs=25.5

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFH   55 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~   55 (76)
                      ....+|+|+|..++|||||+++++...+.
T Consensus        63 ~~~~~V~vvG~~n~GKSTLIN~Llg~~~~   91 (550)
T 2qpt_A           63 DGKPMVLVAGQYSTGKTSFIQYLLEQEVP   91 (550)
T ss_dssp             SSCCEEEEEEBTTSCHHHHHHHHHTSCCS
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCccc
Confidence            45789999999999999999999987763

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=96.75  E-value=0.00068  Score=41.21  Aligned_cols=21  Identities=29%  Similarity=0.476  Sum_probs=17.6

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .++++|++|+||||+++.+..
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999976653

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=96.74  E-value=0.00085  Score=45.43  Aligned_cols=24  Identities=29%  Similarity=0.367  Sum_probs=20.8

Q ss_pred             eeEEEECCCCCcchhhhhhhhhCc
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      .+|+|+|.+++|||||+++++...
T Consensus       159 a~V~lvG~~nvGKSTLln~L~~~~  182 (342)
T 1lnz_A          159 ADVGLVGFPSVGKSTLLSVVSSAK  182 (342)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEEC
T ss_pred             CeeeeeCCCCCCHHHHHHHHHcCC
Confidence            367899999999999999888654

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=96.74  E-value=0.0007  Score=41.17  Aligned_cols=21  Identities=24%  Similarity=0.423  Sum_probs=17.2

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .+.++|++|+|||||++-++.
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g   55 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQ   55 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999965443

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=96.74  E-value=0.00072  Score=40.34  Aligned_cols=21  Identities=24%  Similarity=0.436  Sum_probs=17.6

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      ..++|+|.+|+||||+.+.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La   25 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLA   25 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            358999999999999996544

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=96.72  E-value=0.00062  Score=46.65  Aligned_cols=24  Identities=29%  Similarity=0.444  Sum_probs=21.1

Q ss_pred             eeEEEECCCCCcchhhhhhhhhCc
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      +++.++|.+++|||||+++++...
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~   25 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRAN   25 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC
Confidence            689999999999999998887643

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.71  E-value=0.00079  Score=39.84  Aligned_cols=21  Identities=38%  Similarity=0.661  Sum_probs=17.8

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+++.|++|+|||++++.+..
T Consensus        45 ~~ll~G~~G~GKT~l~~~~~~   65 (195)
T 1jbk_A           45 NPVLIGEPGVGKTAIVEGLAQ   65 (195)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHH
Confidence            478999999999999976654

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.70  E-value=0.00086  Score=41.33  Aligned_cols=22  Identities=32%  Similarity=0.499  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      -.|+++|.+|+||||+.+.+..
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~   47 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFAR   47 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999976553

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=96.67  E-value=0.0019  Score=46.50  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=21.9

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhh
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~   50 (76)
                      ....++|+++|..++|||||+.+++
T Consensus       174 ~k~~~~I~iiG~~d~GKSTLi~~Ll  198 (592)
T 3mca_A          174 PKPVVHLVVTGHVDSGKSTMLGRIM  198 (592)
T ss_dssp             CCCEEEEEEECCSSSTHHHHHHHHH
T ss_pred             CCCccEEEEEcCCCCCHHHHHHHHH
Confidence            3457899999999999999999885

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.67  E-value=0.00085  Score=41.38  Aligned_cols=21  Identities=24%  Similarity=0.445  Sum_probs=17.6

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      ..++|+|++|+||||+++.+.
T Consensus        30 ~~i~l~G~~GsGKSTl~~~L~   50 (200)
T 4eun_A           30 RHVVVMGVSGSGKTTIAHGVA   50 (200)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            458899999999999996554

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.67  E-value=0.00091  Score=42.48  Aligned_cols=21  Identities=29%  Similarity=0.563  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      ..++|+|++|+||||+++.+.
T Consensus        28 ~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           28 LRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999997655

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.66  E-value=0.00085  Score=41.39  Aligned_cols=22  Identities=27%  Similarity=0.279  Sum_probs=18.0

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      -..++|+|++|+||||+.+.+.
T Consensus        25 g~~i~l~G~sGsGKSTl~~~La   46 (200)
T 3uie_A           25 GCVIWVTGLSGSGKSTLACALN   46 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3568899999999999986544

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.66  E-value=0.0013  Score=42.68  Aligned_cols=23  Identities=35%  Similarity=0.566  Sum_probs=18.1

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      .+.++|++|+|||||++ .+.+..
T Consensus        33 ~~~l~G~nGsGKSTLl~-~l~Gl~   55 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLD-LLLGIH   55 (253)
T ss_dssp             EEEEECCSSSSHHHHHH-HHTTSS
T ss_pred             EEEEECCCCCCHHHHHH-HHhCCC
Confidence            36799999999999995 555553

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.64  E-value=0.00094  Score=40.00  Aligned_cols=21  Identities=33%  Similarity=0.464  Sum_probs=18.0

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -|++.|.+|+||||+.+.+..
T Consensus         5 ~i~l~G~~GsGKST~a~~La~   25 (178)
T 1qhx_A            5 MIILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999976654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=96.61  E-value=0.0011  Score=45.81  Aligned_cols=27  Identities=22%  Similarity=0.342  Sum_probs=23.1

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      ...++.++|.+|+|||||++.++...+
T Consensus        19 ~g~~vgiVG~pnaGKSTL~n~Ltg~~~   45 (392)
T 1ni3_A           19 NNLKTGIVGMPNVGKSTFFRAITKSVL   45 (392)
T ss_dssp             SCCEEEEEECSSSSHHHHHHHHHHSTT
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCCCc
Confidence            357899999999999999998887544

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.60  E-value=0.00078  Score=40.71  Aligned_cols=21  Identities=29%  Similarity=0.504  Sum_probs=17.5

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      -.++++|++|+|||+|++.+.
T Consensus        39 ~~~~l~G~~G~GKTtL~~~i~   59 (180)
T 3ec2_A           39 KGLTFVGSPGVGKTHLAVATL   59 (180)
T ss_dssp             CEEEECCSSSSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            358899999999999996554

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=96.60  E-value=0.0015  Score=47.61  Aligned_cols=27  Identities=19%  Similarity=0.301  Sum_probs=22.7

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      ....+++++|++++|||||+.+++...
T Consensus         7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~   33 (665)
T 2dy1_A            7 AMIRTVALVGHAGSGKTTLTEALLYKT   33 (665)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred             CCCcEEEEECCCCChHHHHHHHHHHhc
Confidence            346789999999999999999988433

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.59  E-value=0.00088  Score=45.13  Aligned_cols=22  Identities=32%  Similarity=0.498  Sum_probs=18.6

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      .-|+.|+|++|+|||||++.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~  191 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLA  191 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHH
Confidence            5689999999999999996444

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.59  E-value=0.0012  Score=41.72  Aligned_cols=20  Identities=25%  Similarity=0.311  Sum_probs=16.6

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .+.++|++|+|||||++-+.
T Consensus        24 ~~~liG~nGsGKSTLl~~l~   43 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKA   43 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            47899999999999996443

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=96.59  E-value=0.0011  Score=43.59  Aligned_cols=26  Identities=27%  Similarity=0.512  Sum_probs=22.3

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      ..++++++|.++||||||++++....
T Consensus       119 ~~~~v~~vG~~nvGKSsliN~l~~~~  144 (282)
T 1puj_A          119 RAIRALIIGIPNVGKSTLINRLAKKN  144 (282)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred             CCceEEEEecCCCchHHHHHHHhcCc
Confidence            35789999999999999999887543

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.59  E-value=0.001  Score=41.52  Aligned_cols=20  Identities=30%  Similarity=0.551  Sum_probs=16.8

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      ++.++|++|+|||||++.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~   22 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKAS   22 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHH
Confidence            57899999999999996443

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=96.59  E-value=0.0013  Score=46.21  Aligned_cols=26  Identities=19%  Similarity=0.204  Sum_probs=23.1

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      ..++++++|..++|||||+.+++...
T Consensus        18 ~~~~I~iiG~~d~GKSTLi~~L~~~~   43 (482)
T 1wb1_A           18 KNINLGIFGHIDHGKTTLSKVLTEIA   43 (482)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHTTC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHCCC
Confidence            46899999999999999999988655

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=96.58  E-value=0.0011  Score=40.90  Aligned_cols=21  Identities=24%  Similarity=0.477  Sum_probs=17.6

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      ..+.|+|++|+|||||++.+.
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~   27 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALA   27 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            468899999999999996443

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=96.58  E-value=0.0012  Score=38.84  Aligned_cols=20  Identities=20%  Similarity=0.315  Sum_probs=17.4

Q ss_pred             eeEEEECCCCCcchhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRF   49 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~   49 (76)
                      ..|+++|.+|+||||+...+
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            35889999999999999766

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=96.58  E-value=0.0011  Score=48.03  Aligned_cols=26  Identities=31%  Similarity=0.507  Sum_probs=23.0

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhC
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      ...+||+++|..++|||||+.+++..
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~  190 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYD  190 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHh
Confidence            44789999999999999999998854

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.57  E-value=0.0013  Score=40.35  Aligned_cols=24  Identities=21%  Similarity=0.552  Sum_probs=19.6

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..+.|+|+|..|+||||+.+.+..
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~   42 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAE   42 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            346799999999999999976553

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.57  E-value=0.0012  Score=40.85  Aligned_cols=22  Identities=23%  Similarity=0.483  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ++|+|.|.+|+||||+...+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3fb4_A            1 MNIVLMGLPGAGKGTQAEQIIE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999976643

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.56  E-value=0.0012  Score=40.94  Aligned_cols=21  Identities=24%  Similarity=0.325  Sum_probs=17.9

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      .+|.++|++|+||||+.+.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~   26 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMA   26 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            579999999999999996544

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.54  E-value=0.0011  Score=40.67  Aligned_cols=22  Identities=32%  Similarity=0.366  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|+|+|.+|+||||+.+.+..
T Consensus        19 ~~I~l~G~~GsGKSTla~~L~~   40 (202)
T 3t61_A           19 GSIVVMGVSGSGKSSVGEAIAE   40 (202)
T ss_dssp             SCEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999976653

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.52  E-value=0.0013  Score=40.70  Aligned_cols=22  Identities=36%  Similarity=0.502  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ++|+|+|.+|+||||+...+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (216)
T 3dl0_A            1 MNLVLMGLPGAGKGTQGERIVE   22 (216)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999976653

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.50  E-value=0.0012  Score=40.40  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ++|+|+|.+|+||||+.+.+..
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            4789999999999999966554

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=96.50  E-value=0.0014  Score=44.21  Aligned_cols=23  Identities=26%  Similarity=0.515  Sum_probs=20.8

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ...+.++|.+|+|||||+++++.
T Consensus        74 ~~~v~lvG~pgaGKSTLln~L~~   96 (349)
T 2www_A           74 AFRVGLSGPPGAGKSTFIEYFGK   96 (349)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEEcCCCCCHHHHHHHHHH
Confidence            57899999999999999998874

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.49  E-value=0.0014  Score=39.35  Aligned_cols=22  Identities=23%  Similarity=0.314  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|+|.|.+|+||||+...+..
T Consensus         2 ~~I~i~G~~GsGKsT~~~~L~~   23 (194)
T 1nks_A            2 KIGIVTGIPGVGKSTVLAKVKE   23 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999976554

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=96.48  E-value=0.0017  Score=44.86  Aligned_cols=26  Identities=23%  Similarity=0.338  Sum_probs=22.9

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhC
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      ...+|++++|..++|||||+.+++.+
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~   47 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHD   47 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhh
Confidence            44689999999999999999998754

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.47  E-value=0.0013  Score=40.47  Aligned_cols=21  Identities=33%  Similarity=0.604  Sum_probs=17.7

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++++|++|+|||+|+..++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~   45 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIA   45 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            467899999999999987663

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.47  E-value=0.00096  Score=39.56  Aligned_cols=22  Identities=32%  Similarity=0.551  Sum_probs=18.1

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      -.+++.|++|+|||++++.+..
T Consensus        44 ~~vll~G~~G~GKT~la~~~~~   65 (187)
T 2p65_A           44 NNPILLGDPGVGKTAIVEGLAI   65 (187)
T ss_dssp             CEEEEESCGGGCHHHHHHHHHH
T ss_pred             CceEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999976554

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.47  E-value=0.0015  Score=39.09  Aligned_cols=21  Identities=33%  Similarity=0.411  Sum_probs=17.7

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      ..++|+|.+|+||||+++.+.
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~   29 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVA   29 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHH
Confidence            468899999999999996554

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.47  E-value=0.0015  Score=39.58  Aligned_cols=21  Identities=24%  Similarity=0.544  Sum_probs=17.9

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .|++.|..|+||||+.+.+..
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~   22 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISK   22 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            589999999999999976554

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.45  E-value=0.0016  Score=39.29  Aligned_cols=22  Identities=23%  Similarity=0.404  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|+++|.+|+||||+...+..
T Consensus         6 ~~i~l~G~~GsGKst~a~~La~   27 (185)
T 3trf_A            6 TNIYLIGLMGAGKTSVGSQLAK   27 (185)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999976653

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.45  E-value=0.002  Score=39.39  Aligned_cols=23  Identities=22%  Similarity=0.414  Sum_probs=19.1

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ...|+|.|..|+||||+..++..
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~   37 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVK   37 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999976653

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=96.44  E-value=0.0018  Score=47.50  Aligned_cols=28  Identities=21%  Similarity=0.468  Sum_probs=24.3

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      ...++|+|+|+.++|||||++.++...+
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~~   94 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGENL   94 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSSC
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence            3478999999999999999999986653

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.43  E-value=0.0019  Score=38.46  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|++.|.+|+||||+.+++..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3588999999999999977765

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.43  E-value=0.0014  Score=42.70  Aligned_cols=20  Identities=20%  Similarity=0.479  Sum_probs=17.0

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .++++|++|+||||+++.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~   46 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMI   46 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHH
Confidence            57899999999999996544

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.41  E-value=0.0022  Score=40.50  Aligned_cols=22  Identities=18%  Similarity=0.472  Sum_probs=18.3

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      -..+.|.|..|+||||+++.+.
T Consensus        20 g~~i~i~G~~GsGKSTl~~~L~   41 (230)
T 2vp4_A           20 PFTVLIEGNIGSGKTTYLNHFE   41 (230)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTG
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4568899999999999996544

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=96.41  E-value=0.0016  Score=44.98  Aligned_cols=25  Identities=32%  Similarity=0.503  Sum_probs=22.4

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      ..++++++|..++|||||+.+++..
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~   29 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMD   29 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHH
Confidence            4689999999999999999998753

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.40  E-value=0.0016  Score=40.22  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..++++|.+|+|||||+.+++.
T Consensus         7 ~~i~i~G~sGsGKTTl~~~l~~   28 (174)
T 1np6_A            7 PLLAFAAWSGTGKTTLLKKLIP   28 (174)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            4578999999999999987664

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.40  E-value=0.0018  Score=38.87  Aligned_cols=22  Identities=18%  Similarity=0.194  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|++.|.+|+||||+.+.+..
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~   25 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMD   25 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999976543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=96.37  E-value=0.002  Score=43.97  Aligned_cols=25  Identities=16%  Similarity=0.196  Sum_probs=22.4

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhh
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ...++|+++|..++|||||+.+++.
T Consensus         9 ~~~~~I~iiG~~~~GKSTLi~~L~~   33 (405)
T 2c78_A            9 KPHVNVGTIGHVDHGKTTLTAALTY   33 (405)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEEEcCCCCCHHHHHHHHHh
Confidence            3468999999999999999998876

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=96.36  E-value=0.0016  Score=43.12  Aligned_cols=21  Identities=43%  Similarity=0.683  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      ..++++|++|+|||||++.+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~  186 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT  186 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            457899999999999998766

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.35  E-value=0.0018  Score=38.75  Aligned_cols=20  Identities=35%  Similarity=0.549  Sum_probs=16.9

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .++++|++|+|||+|++-+.
T Consensus        38 ~~~l~G~~G~GKTtL~~~i~   57 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQAWV   57 (149)
T ss_dssp             EEEEESSSTTTTCHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999996544

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.35  E-value=0.0017  Score=43.49  Aligned_cols=19  Identities=32%  Similarity=0.452  Sum_probs=16.4

Q ss_pred             eEEEECCCCCcchhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRF   49 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~   49 (76)
                      .+.|+|++|+|||||++.+
T Consensus       128 ~vaIvGpsGsGKSTLl~lL  146 (305)
T 2v9p_A          128 CLAFIGPPNTGKSMLCNSL  146 (305)
T ss_dssp             EEEEECSSSSSHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHH
Confidence            5789999999999999643

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=96.35  E-value=0.0021  Score=43.83  Aligned_cols=23  Identities=17%  Similarity=0.339  Sum_probs=21.3

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .+||+++|..++|||||+.+++.
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~   25 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITK   25 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhC
Confidence            58999999999999999998876

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.34  E-value=0.0018  Score=41.10  Aligned_cols=19  Identities=32%  Similarity=0.569  Sum_probs=16.7

Q ss_pred             EEEECCCCCcchhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~   50 (76)
                      ++++|++|+|||+|++.+.
T Consensus        52 ~ll~G~~G~GKTtl~~~i~   70 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLARAVA   70 (254)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            8999999999999996554

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.34  E-value=0.0022  Score=39.39  Aligned_cols=22  Identities=27%  Similarity=0.419  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      +.+.++|.+|+||||+.+.+..
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999966553

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=96.33  E-value=0.0018  Score=39.92  Aligned_cols=22  Identities=18%  Similarity=0.288  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      -.+++.|++|+|||++++.+..
T Consensus        53 ~~~ll~G~~G~GKT~la~~l~~   74 (242)
T 3bos_A           53 QAIYLWGPVKSGRTHLIHAACA   74 (242)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999976553

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.32  E-value=0.0008  Score=41.42  Aligned_cols=20  Identities=35%  Similarity=0.657  Sum_probs=17.1

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .+.|+|++|+|||||+..++
T Consensus         4 ~v~IvG~SGsGKSTL~~~L~   23 (171)
T 2f1r_A            4 ILSIVGTSDSGKTTLITRMM   23 (171)
T ss_dssp             EEEEEESCHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999996554

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=96.30  E-value=0.002  Score=44.13  Aligned_cols=21  Identities=38%  Similarity=0.529  Sum_probs=18.2

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .++++|++|+|||||++.++.
T Consensus       217 ~~~lvG~sG~GKSTLln~L~g  237 (358)
T 2rcn_A          217 ISIFAGQSGVGKSSLLNALLG  237 (358)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             EEEEECCCCccHHHHHHHHhc
Confidence            578999999999999976664

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=96.29  E-value=0.002  Score=39.27  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=17.7

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+++.|++|+|||++++.+..
T Consensus        47 ~~ll~G~~G~GKT~l~~~~~~   67 (250)
T 1njg_A           47 AYLFSGTRGVGKTSIARLLAK   67 (250)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999976653

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.27  E-value=0.0024  Score=40.26  Aligned_cols=23  Identities=26%  Similarity=0.484  Sum_probs=19.2

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ...|+++|..|+||||+...+..
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~   38 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAK   38 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999876553

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.26  E-value=0.0021  Score=40.05  Aligned_cols=21  Identities=19%  Similarity=0.297  Sum_probs=18.4

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+.++|++|+|||+|+..++.
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~   46 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAV   46 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            478899999999999987775

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=96.26  E-value=0.0021  Score=44.81  Aligned_cols=35  Identities=26%  Similarity=0.293  Sum_probs=23.9

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCc
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGR   71 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~   71 (76)
                      ++.++|++|||||||++.+.. ..    .++.| .+.+.|+
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag-~~----~~~~G-~i~~~G~  193 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMAR-YT----RADVI-VVGLIGE  193 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH-HS----CCSEE-EEEEESC
T ss_pred             EEEEECCCCCCHHHHHHHHhc-cc----CCCeE-EEEEece
Confidence            578999999999999865443 32    23443 5556555

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.25  E-value=0.0022  Score=42.17  Aligned_cols=22  Identities=27%  Similarity=0.359  Sum_probs=18.9

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-++++|++|+||||+...+..
T Consensus        34 ~livl~G~sGsGKSTla~~L~~   55 (287)
T 1gvn_B           34 TAFLLGGQPGSGKTSLRSAIFE   55 (287)
T ss_dssp             EEEEEECCTTSCTHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999977654

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.24  E-value=0.0027  Score=38.18  Aligned_cols=22  Identities=23%  Similarity=0.490  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|+++|..|+||||+...+..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999976653

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.23  E-value=0.0021  Score=42.93  Aligned_cols=22  Identities=27%  Similarity=0.351  Sum_probs=18.1

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      -..+.|+|++|+|||||++.+.
T Consensus        90 g~ivgI~G~sGsGKSTL~~~L~  111 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQ  111 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCchHHHHHHHHH
Confidence            4568899999999999996443

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.23  E-value=0.0029  Score=40.41  Aligned_cols=23  Identities=26%  Similarity=0.491  Sum_probs=17.7

Q ss_pred             eee-EEEECCCCCcchhhhhhhhh
Q psy1355          29 QYK-LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~k-ivllG~~~vGKtsl~~~~~~   51 (76)
                      ..| |+|+|++|+||+|...++..
T Consensus        28 k~kiI~llGpPGsGKgTqa~~L~~   51 (217)
T 3umf_A           28 KAKVIFVLGGPGSGKGTQCEKLVQ   51 (217)
T ss_dssp             SCEEEEEECCTTCCHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            445 45789999999999876654

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=96.23  E-value=0.0022  Score=38.68  Aligned_cols=20  Identities=25%  Similarity=0.549  Sum_probs=17.6

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      +++.|+.|+|||+++..+..
T Consensus        41 ~ll~G~~G~GKT~l~~~l~~   60 (226)
T 2chg_A           41 LLFSGPPGTGKTATAIALAR   60 (226)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999976654

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.22  E-value=0.0022  Score=39.34  Aligned_cols=21  Identities=29%  Similarity=0.275  Sum_probs=18.5

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++++|++|+|||+|+..++.
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999988775

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.22  E-value=0.0021  Score=42.82  Aligned_cols=21  Identities=19%  Similarity=0.445  Sum_probs=17.5

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      -.+.++|++||||||++..+.
T Consensus       103 ~vi~lvG~nGsGKTTll~~La  123 (304)
T 1rj9_A          103 RVVLVVGVNGVGKTTTIAKLG  123 (304)
T ss_dssp             SEEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHH
Confidence            467889999999999996544

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.19  E-value=0.0011  Score=47.01  Aligned_cols=20  Identities=35%  Similarity=0.471  Sum_probs=16.4

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .+.|+|++|+|||||++-+.
T Consensus        31 ~~~liG~nGsGKSTLl~~l~   50 (483)
T 3euj_A           31 VTTLSGGNGAGKSTTMAGFV   50 (483)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHh
Confidence            46799999999999995433

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=96.19  E-value=0.0048  Score=36.24  Aligned_cols=22  Identities=14%  Similarity=0.187  Sum_probs=17.9

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-+++.|++|+|||++.+.+..
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~   46 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQ   46 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999964443

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=96.18  E-value=0.0011  Score=47.27  Aligned_cols=29  Identities=17%  Similarity=0.201  Sum_probs=24.0

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHE   56 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~   56 (76)
                      ...+++++|+.++|||||+.++....+..
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~   31 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVAS   31 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSB
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCcc
Confidence            35689999999999999999888765544

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.17  E-value=0.0029  Score=40.36  Aligned_cols=24  Identities=21%  Similarity=0.397  Sum_probs=20.3

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..++|+|+|.+|+||||+..++..
T Consensus        28 ~~~~I~l~G~~GsGKsT~a~~L~~   51 (243)
T 3tlx_A           28 PDGRYIFLGAPGSGKGTQSLNLKK   51 (243)
T ss_dssp             CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999977654

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.17  E-value=0.0026  Score=38.32  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|++.|.+|+||||+.+.+..
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~   27 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALAT   27 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999976653

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.17  E-value=0.0025  Score=38.26  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=17.8

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      +|+|+|.+|+||||+.+.+..
T Consensus         6 ~i~i~G~~GsGKsTla~~La~   26 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAK   26 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            689999999999999865543

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=96.15  E-value=0.0026  Score=44.36  Aligned_cols=24  Identities=21%  Similarity=0.385  Sum_probs=21.9

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..++|+++|..++|||||+.+++.
T Consensus         6 ~~~~i~iiG~~~~GKSTLi~~Ll~   29 (458)
T 1f60_A            6 SHINVVVIGHVDSGKSTTTGHLIY   29 (458)
T ss_dssp             EEEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHHH
Confidence            468999999999999999999875

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=96.15  E-value=0.0023  Score=46.22  Aligned_cols=27  Identities=19%  Similarity=0.224  Sum_probs=23.1

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFH   55 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~   55 (76)
                      ..+|+++|+.++|||||+.+++...+.
T Consensus         5 ~~~V~IvGh~d~GKTTLl~~L~~~~v~   31 (594)
T 1g7s_A            5 SPIVSVLGHVDHGKTTLLDHIRGSAVA   31 (594)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCcHHHHHHHHhcccCc
Confidence            578999999999999999998865543

>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}

Probab=96.12  E-value=0.0027  Score=41.28  Aligned_cols=22  Identities=45%  Similarity=0.582  Sum_probs=18.9

Q ss_pred             eEEEECCCCCcchhhhhhhhhC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~   52 (76)
                      -++|.|+.|+|||+|++++...
T Consensus        33 ~v~i~G~~G~GKT~Ll~~~~~~   54 (350)
T 2qen_A           33 LTLLLGIRRVGKSSLLRAFLNE   54 (350)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcCCHHHHHHHHHHH
Confidence            4788999999999999887753

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=96.11  E-value=0.0053  Score=38.78  Aligned_cols=27  Identities=26%  Similarity=0.449  Sum_probs=22.4

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhh
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .......+++.|..||||||++.++..
T Consensus        10 ~~~~~~i~~~~GkgGvGKTTl~~~La~   36 (262)
T 1yrb_A           10 HGMASMIVVFVGTAGSGKTTLTGEFGR   36 (262)
T ss_dssp             TTCCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCcceEEEEEeCCCCCCHHHHHHHHHH
Confidence            344567889999999999999988774

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.11  E-value=0.0032  Score=40.01  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..+.|+|++|+||||+++.+..
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~   47 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIME   47 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5688999999999999965543

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.11  E-value=0.0027  Score=40.94  Aligned_cols=19  Identities=32%  Similarity=0.569  Sum_probs=16.7

Q ss_pred             EEEECCCCCcchhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~   50 (76)
                      ++++|++|+|||+|++.+.
T Consensus        76 vll~Gp~GtGKTtl~~~i~   94 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLARAVA   94 (278)
T ss_dssp             EEEECCTTSSHHHHHHHHH
T ss_pred             EEEECCCcChHHHHHHHHH
Confidence            7999999999999996554

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=96.11  E-value=0.0031  Score=43.03  Aligned_cols=24  Identities=29%  Similarity=0.480  Sum_probs=20.4

Q ss_pred             ccceeeEEEECCCCCcchhhhhhh
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRF   49 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~   49 (76)
                      .....||+|+|.+++||||+++++
T Consensus        30 ~~~~~killlG~~~SGKST~~kq~   53 (362)
T 1zcb_A           30 SARLVKILLLGAGESGKSTFLKQM   53 (362)
T ss_dssp             -CCCEEEEEECSTTSSHHHHHHHH
T ss_pred             hcCccEEEEECCCCCcHHHHHHHH
Confidence            345789999999999999999764

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.11  E-value=0.0037  Score=44.53  Aligned_cols=23  Identities=30%  Similarity=0.523  Sum_probs=18.5

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      .+.++|++|+|||||++ .+.+..
T Consensus        49 ~~~LvG~NGaGKSTLlk-~l~Gl~   71 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVK-ILAGQL   71 (538)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHTSS
T ss_pred             EEEEECCCCCCHHHHHH-HHhCCC
Confidence            47899999999999995 555554

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.10  E-value=0.0029  Score=38.10  Aligned_cols=21  Identities=29%  Similarity=0.472  Sum_probs=18.1

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      ..|+++|.+|+||||+.+.+.
T Consensus        12 ~~i~i~G~~GsGKst~~~~l~   32 (180)
T 3iij_A           12 PNILLTGTPGVGKTTLGKELA   32 (180)
T ss_dssp             CCEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEeCCCCCHHHHHHHHH
Confidence            468899999999999997655

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.09  E-value=0.0031  Score=40.45  Aligned_cols=22  Identities=23%  Similarity=0.298  Sum_probs=18.5

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      ...|.|+|++|+||||+++.+.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3578999999999999996554

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.09  E-value=0.0034  Score=38.61  Aligned_cols=23  Identities=17%  Similarity=0.384  Sum_probs=18.9

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ...+.++|.+|+||||++..+..
T Consensus        21 ~~~i~i~G~~GsGKSTl~~~L~~   43 (207)
T 2qt1_A           21 TFIIGISGVTNSGKTTLAKNLQK   43 (207)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            46788999999999999965543

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.09  E-value=0.0033  Score=42.38  Aligned_cols=22  Identities=32%  Similarity=0.388  Sum_probs=18.4

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      .+-+.|+|++|+||||+++.+.
T Consensus        92 p~iigI~GpsGSGKSTl~~~L~  113 (321)
T 3tqc_A           92 PYIIGIAGSVAVGKSTTSRVLK  113 (321)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4678899999999999996543

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=96.09  E-value=0.0022  Score=45.67  Aligned_cols=25  Identities=12%  Similarity=0.367  Sum_probs=22.0

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhh
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~   50 (76)
                      .....+|+++|.+++|||||+.+++
T Consensus        10 ~~~~r~IaIiG~~~aGKTTL~~~Ll   34 (528)
T 3tr5_A           10 TAMRRTFAIISHPDAGKTTLTEKLL   34 (528)
T ss_dssp             HHTEEEEEEEECTTSSHHHHHHHHH
T ss_pred             hhcCCEEEEECCCCCcHHHHHHHHH
Confidence            3457899999999999999999885

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.08  E-value=0.0029  Score=38.65  Aligned_cols=22  Identities=32%  Similarity=0.372  Sum_probs=18.1

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-+++.|++|+|||+|+..+..
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~   76 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIAN   76 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHH
Confidence            4688999999999999865543

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=96.08  E-value=0.0037  Score=42.55  Aligned_cols=26  Identities=35%  Similarity=0.477  Sum_probs=21.7

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhh
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~   50 (76)
                      ......|++++|.+++||||+++++-
T Consensus         5 ~~~~~~k~lllG~~~sGKsT~~kq~~   30 (354)
T 2xtz_A            5 SGIHIRKLLLLGAGESGKSTIFKQIK   30 (354)
T ss_dssp             CCCEEEEEEEECSTTSSHHHHHHHHH
T ss_pred             CCCCceeEEEECCCCCcHHHHHHHHH
Confidence            34567899999999999999997643

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.07  E-value=0.0024  Score=41.46  Aligned_cols=21  Identities=24%  Similarity=0.328  Sum_probs=17.7

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|+|++|+|||+|+..++.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~   57 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQAL   57 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            478999999999999976654

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=96.06  E-value=0.0027  Score=44.24  Aligned_cols=27  Identities=26%  Similarity=0.406  Sum_probs=22.1

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      ...++|+++|.+|+||||+.+++....
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~l   63 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRYL   63 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence            345789999999999999998877543

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.06  E-value=0.0035  Score=41.45  Aligned_cols=23  Identities=22%  Similarity=0.403  Sum_probs=18.8

Q ss_pred             ceeeEEEECCCCCcchhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~   50 (76)
                      ..+.|.|+|++|+|||||++.+.
T Consensus        30 ~~~ii~I~G~sGsGKSTla~~L~   52 (290)
T 1odf_A           30 CPLFIFFSGPQGSGKSFTSIQIY   52 (290)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHH
Confidence            35678999999999999986443

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=96.05  E-value=0.0034  Score=42.21  Aligned_cols=24  Identities=21%  Similarity=0.231  Sum_probs=20.6

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..++|+++|..|+|||||+.++..
T Consensus        78 ~~~~I~i~G~~G~GKSTl~~~L~~  101 (355)
T 3p32_A           78 NAHRVGITGVPGVGKSTAIEALGM  101 (355)
T ss_dssp             CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHH
Confidence            356899999999999999988764

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.05  E-value=0.0029  Score=39.25  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ++|+|.|..|+||||+...+..
T Consensus         1 m~I~l~G~~GsGKsT~a~~L~~   22 (214)
T 1e4v_A            1 MRIILLGAPVAGKGTQAQFIME   22 (214)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999976654

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.02  E-value=0.004  Score=37.91  Aligned_cols=22  Identities=23%  Similarity=0.184  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|++.|..|+||||+...+..
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~   26 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKD   26 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999976654

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.02  E-value=0.0036  Score=38.08  Aligned_cols=22  Identities=18%  Similarity=0.395  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|+|+|.+|+||||+.+.+..
T Consensus        11 ~~I~l~G~~GsGKSTv~~~La~   32 (184)
T 1y63_A           11 INILITGTPGTGKTSMAEMIAA   32 (184)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4699999999999999976554

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.01  E-value=0.0031  Score=41.92  Aligned_cols=21  Identities=14%  Similarity=0.332  Sum_probs=17.5

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      -.+.++|++|+||||++..+.
T Consensus       101 ~vi~lvG~nGsGKTTll~~La  121 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLA  121 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHH
Confidence            467899999999999996544

>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20

Probab=96.01  E-value=0.0027  Score=41.26  Aligned_cols=21  Identities=29%  Similarity=0.335  Sum_probs=18.5

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|.|+.|+|||+|+.++..
T Consensus        32 ~v~i~G~~G~GKT~L~~~~~~   52 (357)
T 2fna_A           32 ITLVLGLRRTGKSSIIKIGIN   52 (357)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            578899999999999987765

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.01  E-value=0.0038  Score=42.30  Aligned_cols=20  Identities=30%  Similarity=0.594  Sum_probs=17.2

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .++|+|++|+|||||++.++
T Consensus       177 ~i~ivG~sGsGKSTll~~l~  196 (361)
T 2gza_A          177 VIVVAGETGSGKTTLMKALM  196 (361)
T ss_dssp             CEEEEESSSSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            68899999999999996444

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=96.00  E-value=0.0031  Score=42.45  Aligned_cols=22  Identities=18%  Similarity=0.537  Sum_probs=18.3

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      -..+.++|++|+||||++..+.
T Consensus       129 g~vi~lvG~nGaGKTTll~~La  150 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLA  150 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4568899999999999996554

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=96.00  E-value=0.0035  Score=42.16  Aligned_cols=22  Identities=23%  Similarity=0.308  Sum_probs=18.9

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      -..+.++|++|+|||||++.+.
T Consensus        55 g~~v~i~G~~GaGKSTLl~~l~   76 (337)
T 2qm8_A           55 AIRVGITGVPGVGKSTTIDALG   76 (337)
T ss_dssp             SEEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3568899999999999998765

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=95.99  E-value=0.0033  Score=39.36  Aligned_cols=22  Identities=23%  Similarity=0.499  Sum_probs=18.9

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|+|+|..|+||||+.+++..
T Consensus         8 ~~I~l~G~~GsGKsT~a~~La~   29 (227)
T 1zd8_A            8 LRAVIMGAPGSGKGTVSSRITT   29 (227)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999976653

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=95.98  E-value=0.0033  Score=41.85  Aligned_cols=20  Identities=25%  Similarity=0.493  Sum_probs=16.9

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .++++|++|+|||||++-+.
T Consensus        53 ~~ll~Gp~G~GKTTLa~~ia   72 (334)
T 1in4_A           53 HVLLAGPPGLGKTTLAHIIA   72 (334)
T ss_dssp             CEEEESSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            47899999999999996544

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=95.98  E-value=0.0034  Score=39.83  Aligned_cols=20  Identities=20%  Similarity=0.431  Sum_probs=17.2

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      -+++.|++|+|||++++.+.
T Consensus        47 ~vll~G~~GtGKT~la~~la   66 (257)
T 1lv7_A           47 GVLMVGPPGTGKTLLAKAIA   66 (257)
T ss_dssp             EEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHH
Confidence            48999999999999996554

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=95.98  E-value=0.0033  Score=40.98  Aligned_cols=19  Identities=26%  Similarity=0.426  Sum_probs=16.7

Q ss_pred             EEEECCCCCcchhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~   50 (76)
                      ++++|++|+|||+|++.+.
T Consensus        47 vlL~Gp~GtGKTtLakala   65 (274)
T 2x8a_A           47 VLLAGPPGCGKTLLAKAVA   65 (274)
T ss_dssp             EEEESSTTSCHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHH
Confidence            8999999999999996544

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=95.98  E-value=0.0053  Score=44.94  Aligned_cols=26  Identities=12%  Similarity=0.072  Sum_probs=23.0

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhh
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .....+|+++|..++|||||+.+++.
T Consensus         9 ~~~~~~I~IvG~~~aGKTTL~~~Ll~   34 (691)
T 1dar_A            9 LKRLRNIGIAAHIDAGKTTTTERILY   34 (691)
T ss_dssp             GGGEEEEEEEECTTSCHHHHHHHHHH
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHH
Confidence            45678999999999999999999873

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=95.96  E-value=0.0052  Score=42.70  Aligned_cols=21  Identities=29%  Similarity=0.469  Sum_probs=18.1

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .+.++|++|+|||||++.++.
T Consensus        71 ~valvG~nGaGKSTLln~L~G   91 (413)
T 1tq4_A           71 NVAVTGETGSGKSSFINTLRG   91 (413)
T ss_dssp             EEEEEECTTSSHHHHHHHHHT
T ss_pred             EEEEECCCCCcHHHHHHHHhC
Confidence            788999999999999975553

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=95.96  E-value=0.0041  Score=37.84  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=18.9

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|+|.|..|+||||+...+..
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~   26 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIME   26 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999976665

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=95.95  E-value=0.0032  Score=37.86  Aligned_cols=18  Identities=22%  Similarity=0.278  Sum_probs=15.3

Q ss_pred             eEEEECCCCCcchhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLR   48 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~   48 (76)
                      -.+|+|++|+|||+|+.-
T Consensus        28 ~~~i~G~NGsGKStll~a   45 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDA   45 (182)
T ss_dssp             EEEEEECTTSSHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHH
Confidence            467899999999999853

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=95.95  E-value=0.0043  Score=36.71  Aligned_cols=21  Identities=29%  Similarity=0.404  Sum_probs=18.0

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      +|++.|..|+||||+.+.+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~   22 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSR   22 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999966554

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.94  E-value=0.0031  Score=41.40  Aligned_cols=21  Identities=19%  Similarity=0.419  Sum_probs=18.1

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|.|++|+|||+|++.+..
T Consensus        47 ~vli~G~~G~GKTtl~~~l~~   67 (386)
T 2qby_A           47 NIFIYGLTGTGKTAVVKFVLS   67 (386)
T ss_dssp             CEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999976654

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=95.94  E-value=0.0047  Score=37.05  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|++.|..|+||||+...+..
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~   25 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVE   25 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999876543

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=95.93  E-value=0.0036  Score=42.56  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=19.2

Q ss_pred             cceeeEEEECCCCCcchhhhhh
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLR   48 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~   48 (76)
                      ...+|++|+|...+||||++++
T Consensus         3 ~~~~klLLLG~geSGKSTi~KQ   24 (340)
T 4fid_A            3 AKPITVMLLGSGESGKSTIAKQ   24 (340)
T ss_dssp             -CCEEEEEEECTTSSHHHHHHH
T ss_pred             CCcceEEEECCCCCcHHHHHHH
Confidence            3578999999999999999965

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=95.93  E-value=0.004  Score=38.43  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=18.4

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      ...+.++|++|+||||++..+.
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~   43 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLS   43 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4568899999999999996554

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=95.92  E-value=0.0031  Score=39.27  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|+|+|.+|+||||+..++..
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~   27 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKT   27 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999976553

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=95.92  E-value=0.0043  Score=38.58  Aligned_cols=22  Identities=23%  Similarity=0.474  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|+|+|..|+||||+...+..
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~   26 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQE   26 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999976554

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=95.91  E-value=0.0038  Score=40.16  Aligned_cols=20  Identities=15%  Similarity=0.464  Sum_probs=17.1

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      -++|+|++|+|||||...+.
T Consensus         3 li~I~G~~GSGKSTla~~La   22 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIA   22 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHH
Confidence            46899999999999987665

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=95.91  E-value=0.0036  Score=44.58  Aligned_cols=25  Identities=8%  Similarity=0.270  Sum_probs=22.6

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhh
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ...++|+++|..++|||||+.+++.
T Consensus        11 ~~~~~I~IiG~~~aGKTTL~~~Ll~   35 (529)
T 2h5e_A           11 AKRRTFAIISHPDAGKTTITEKVLL   35 (529)
T ss_dssp             HTEEEEEEEECTTSSHHHHHHHHHH
T ss_pred             cCCCEEEEECCCCChHHHHHHHHHh
Confidence            4578999999999999999999885

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=95.90  E-value=0.0047  Score=41.76  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=19.9

Q ss_pred             ccceeeEEEECCCCCcchhhhhh
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLR   48 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~   48 (76)
                      ....+|++++|...+||||++++
T Consensus         4 ~~~~~klLlLG~geSGKSTi~KQ   26 (327)
T 3ohm_A            4 ARRELKLLLLGTGESGKSTFIKQ   26 (327)
T ss_dssp             -CCEEEEEEECSTTSSHHHHHHH
T ss_pred             hcccceEEEEcCCCccHHHHHHH
Confidence            34579999999999999999976

>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*

Probab=95.89  E-value=0.0062  Score=42.11  Aligned_cols=20  Identities=35%  Similarity=0.396  Sum_probs=17.6

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      -+.|+|++|+|||+|+++++
T Consensus       180 i~~I~G~sGsGKTTLl~~la  199 (400)
T 3lda_A          180 ITELFGEFRTGKSQLCHTLA  199 (400)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEcCCCCChHHHHHHHH
Confidence            47789999999999998775

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=95.87  E-value=0.0045  Score=39.05  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      +.|+++|++|+||+|...++..
T Consensus         1 M~Iil~GpPGsGKgTqa~~La~   22 (206)
T 3sr0_A            1 MILVFLGPPGAGKGTQAKRLAK   22 (206)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999876654

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=95.86  E-value=0.0038  Score=42.45  Aligned_cols=20  Identities=20%  Similarity=0.413  Sum_probs=17.1

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .++++|++|+||||+++-++
T Consensus       125 ~i~I~GptGSGKTTlL~~l~  144 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAML  144 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58899999999999996443

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.85  E-value=0.0035  Score=40.50  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=18.0

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|+|++|+|||+|+..++.
T Consensus        32 i~~i~G~~GsGKTtl~~~l~~   52 (279)
T 1nlf_A           32 VGALVSPGGAGKSMLALQLAA   52 (279)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHH
Confidence            477899999999999987764

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=95.85  E-value=0.0043  Score=39.06  Aligned_cols=21  Identities=29%  Similarity=0.400  Sum_probs=17.5

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+++.|++|+|||++++.+..
T Consensus        41 ~vll~G~~GtGKT~la~~la~   61 (262)
T 2qz4_A           41 GALLLGPPGCGKTLLAKAVAT   61 (262)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999965543

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=95.83  E-value=0.0036  Score=41.58  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=18.5

Q ss_pred             eEEEECCCCCcchhhhhhhhhC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~   52 (76)
                      -++|+|.+|+|||||++.+...
T Consensus         6 v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            6 VTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEEecCCCCHHHHHHHHHhh
Confidence            4678999999999999877743

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.82  E-value=0.0038  Score=38.82  Aligned_cols=21  Identities=24%  Similarity=0.447  Sum_probs=17.6

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++++|++|+|||+|+.+++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~   45 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLW   45 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367899999999999877654

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=95.82  E-value=0.0045  Score=40.89  Aligned_cols=22  Identities=32%  Similarity=0.442  Sum_probs=18.2

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      -..+.|+|++|+|||||++.+.
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~  101 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3568899999999999996444

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.81  E-value=0.0041  Score=40.77  Aligned_cols=21  Identities=19%  Similarity=0.332  Sum_probs=17.6

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+++.|++|+|||+|++.+..
T Consensus        39 ~lll~G~~GtGKT~la~~i~~   59 (324)
T 1l8q_A           39 PIFIYGSVGTGKTHLLQAAGN   59 (324)
T ss_dssp             SEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            488999999999999976553

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=95.81  E-value=0.005  Score=38.63  Aligned_cols=21  Identities=14%  Similarity=0.262  Sum_probs=18.0

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .|+|.|..|+||||+...+..
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~   22 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKD   22 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999976553

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=95.81  E-value=0.0013  Score=44.14  Aligned_cols=22  Identities=41%  Similarity=0.468  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      -.++++|++|+|||||++.+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g  195 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISP  195 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC
T ss_pred             CEEEEECCCCCCHHHHHHHhcc
Confidence            3688999999999999976553

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.80  E-value=0.0044  Score=39.71  Aligned_cols=22  Identities=23%  Similarity=0.350  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      --+++.|++|+|||++++.+..
T Consensus        52 ~~~ll~G~~GtGKT~la~~la~   73 (285)
T 3h4m_A           52 KGILLYGPPGTGKTLLAKAVAT   73 (285)
T ss_dssp             SEEEEESSSSSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3489999999999999976553

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=95.79  E-value=0.0046  Score=37.37  Aligned_cols=23  Identities=17%  Similarity=0.341  Sum_probs=18.9

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ...|+++|..|+||||+...+..
T Consensus        12 ~~~I~l~G~~GsGKsT~a~~L~~   34 (199)
T 2bwj_A           12 CKIIFIIGGPGSGKGTQCEKLVE   34 (199)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999966554

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=95.78  E-value=0.0047  Score=37.28  Aligned_cols=22  Identities=18%  Similarity=0.374  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|+++|..|+||||+...+..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~La~   31 (196)
T 2c95_A           10 NIIFVVGGPGSGKGTQCEKIVQ   31 (196)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999976553

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=95.75  E-value=0.0051  Score=37.99  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..+.++|.+|+|||||+.+++.
T Consensus         5 ~~i~i~G~sGsGKTTl~~~L~~   26 (169)
T 1xjc_A            5 NVWQVVGYKHSGKTTLMEKWVA   26 (169)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999977664

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=95.75  E-value=0.0057  Score=37.10  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=19.4

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ...|.|+|.+|+||||+...+..
T Consensus         8 ~~~I~i~G~~GsGKST~~~~La~   30 (203)
T 1uf9_A            8 PIIIGITGNIGSGKSTVAALLRS   30 (203)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            45789999999999999976654

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=95.74  E-value=0.0027  Score=44.10  Aligned_cols=22  Identities=36%  Similarity=0.514  Sum_probs=19.1

Q ss_pred             eEEEECCCCCcchhhhhhhhhC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~   52 (76)
                      ++.|+|++++|||||++.++..
T Consensus       159 ~VgLVG~~gAGKSTLL~~Lsg~  180 (416)
T 1udx_A          159 DVGLVGYPNAGKSSLLAAMTRA  180 (416)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            4789999999999999877754

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=95.74  E-value=0.0037  Score=43.68  Aligned_cols=25  Identities=24%  Similarity=0.299  Sum_probs=21.8

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhh
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ...++|+++|..++|||||+.+++.
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~   65 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILF   65 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHH
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHH
Confidence            3468999999999999999998863

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=95.73  E-value=0.0048  Score=39.82  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      --+++.|++|+|||++++.+..
T Consensus        55 ~~vll~Gp~GtGKT~la~~la~   76 (297)
T 3b9p_A           55 KGLLLFGPPGNGKTLLARAVAT   76 (297)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHH
T ss_pred             CeEEEECcCCCCHHHHHHHHHH
Confidence            4588999999999999965553

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=95.73  E-value=0.005  Score=41.92  Aligned_cols=20  Identities=20%  Similarity=0.479  Sum_probs=17.0

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .++++|++|+||||+++.++
T Consensus       138 ~i~ivG~~GsGKTTll~~l~  157 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMI  157 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            58899999999999996544

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=95.72  E-value=0.0047  Score=41.86  Aligned_cols=21  Identities=29%  Similarity=0.434  Sum_probs=17.6

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      ++.++|++|+|||||++.++.
T Consensus        73 ~~gIiG~nGaGKTTLl~~I~g   93 (347)
T 2obl_A           73 RIGIFAGSGVGKSTLLGMICN   93 (347)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhc
Confidence            578999999999999965554

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=95.72  E-value=0.0065  Score=36.74  Aligned_cols=22  Identities=23%  Similarity=0.356  Sum_probs=18.2

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      ...++++|.+|+||||+.+.+.
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~   34 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLA   34 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHH
Confidence            3568899999999999996554

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=95.71  E-value=0.0017  Score=39.89  Aligned_cols=20  Identities=25%  Similarity=0.434  Sum_probs=17.2

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .|+|.|.+|+||||++..+.
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~   21 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLS   21 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHH
Confidence            47899999999999997654

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=95.70  E-value=0.0067  Score=36.46  Aligned_cols=22  Identities=23%  Similarity=0.371  Sum_probs=18.0

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..++++|.+|+||||+.+.+..
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~   27 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEE   27 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999965543

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.70  E-value=0.0051  Score=40.64  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=18.6

Q ss_pred             eEEEECCCCCcchhhhhhhhhC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~   52 (76)
                      -++|.|++|+|||++++.+...
T Consensus        46 ~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           46 RATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999766643

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=95.70  E-value=0.0041  Score=43.70  Aligned_cols=20  Identities=35%  Similarity=0.607  Sum_probs=16.8

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .+.|+|++|+|||||++-++
T Consensus       140 ~v~IvGpnGsGKSTLlr~L~  159 (460)
T 2npi_A          140 RVVIVGGSQTGKTSLSRTLC  159 (460)
T ss_dssp             CEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHh
Confidence            58899999999999995433

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=95.70  E-value=0.0049  Score=40.01  Aligned_cols=21  Identities=19%  Similarity=0.272  Sum_probs=17.9

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      -.|+|+|.+|+||||+.+.+.
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La   69 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMA   69 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999996554

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=95.69  E-value=0.006  Score=41.44  Aligned_cols=24  Identities=38%  Similarity=0.569  Sum_probs=19.9

Q ss_pred             ccceeeEEEECCCCCcchhhhhhh
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRF   49 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~   49 (76)
                      ....+|++++|.+.+||||+++++
T Consensus        29 ~~~~~klLlLG~geSGKST~~KQm   52 (353)
T 1cip_A           29 AAREVKLLLLGAGESGKSTIVKQM   52 (353)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHH
T ss_pred             hcccceEEEEcCCCCCchhHHHHH
Confidence            455899999999999999999763

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=95.69  E-value=0.0057  Score=36.24  Aligned_cols=22  Identities=14%  Similarity=0.347  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|++.|.+|+||||+.+.+..
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~   24 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELAR   24 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999976553

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=95.69  E-value=0.0057  Score=36.60  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|+|.|..|+||||+...+..
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~   28 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999876653

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=95.69  E-value=0.0049  Score=41.34  Aligned_cols=23  Identities=13%  Similarity=0.387  Sum_probs=18.2

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      .++++|++|+|||||++-+. +..
T Consensus       173 ~v~i~G~~GsGKTTll~~l~-g~~  195 (330)
T 2pt7_A          173 NVIVCGGTGSGKTTYIKSIM-EFI  195 (330)
T ss_dssp             CEEEEESTTSCHHHHHHHGG-GGS
T ss_pred             EEEEECCCCCCHHHHHHHHh-CCC
Confidence            58899999999999996444 443

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=95.69  E-value=0.006  Score=36.60  Aligned_cols=21  Identities=14%  Similarity=0.273  Sum_probs=17.9

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .|++.|..|+||||+...+..
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~   22 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYE   22 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999976654

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=95.67  E-value=0.0053  Score=37.54  Aligned_cols=22  Identities=27%  Similarity=0.231  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|+|.|..|+||||+...+..
T Consensus        11 ~~I~l~G~~GsGKST~~~~L~~   32 (212)
T 2wwf_A           11 KFIVFEGLDRSGKSTQSKLLVE   32 (212)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999976553

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=95.67  E-value=0.0052  Score=41.99  Aligned_cols=21  Identities=14%  Similarity=0.332  Sum_probs=17.5

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      -.+.++|++|+||||++..+.
T Consensus       158 ~vi~lvG~nGsGKTTll~~La  178 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLA  178 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHH
Confidence            467899999999999996544

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=95.66  E-value=0.0053  Score=44.94  Aligned_cols=25  Identities=12%  Similarity=0.161  Sum_probs=22.3

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhh
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ....+|+++|..++|||||+.+++.
T Consensus         8 ~~~~~I~IvG~~~aGKSTL~~~Ll~   32 (693)
T 2xex_A            8 EKTRNIGIMAHIDAGKTTTTERILY   32 (693)
T ss_dssp             TTEEEEEEECCGGGTHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999999884

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=95.64  E-value=0.005  Score=39.40  Aligned_cols=23  Identities=22%  Similarity=0.304  Sum_probs=19.0

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ...++++|.+|+||||+.+.+..
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~   54 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQK   54 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            35789999999999999976553

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.63  E-value=0.0078  Score=43.67  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=18.3

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      .+.|+|++|+|||||++ .+.+..
T Consensus       105 i~~LvGpNGaGKSTLLk-iL~Gll  127 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALK-ILAGKQ  127 (608)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHTSS
T ss_pred             EEEEECCCCChHHHHHH-HHhcCC
Confidence            47899999999999995 555544

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.62  E-value=0.008  Score=43.53  Aligned_cols=23  Identities=26%  Similarity=0.512  Sum_probs=18.4

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      .+.|+|++|+|||||++ .+.+..
T Consensus       119 ~~~LiG~NGsGKSTLlk-iL~Gll  141 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVK-ILAGQL  141 (607)
T ss_dssp             EEEEECCTTSSHHHHHH-HHTTSS
T ss_pred             EEEEECCCCChHHHHHH-HHhCCC
Confidence            47899999999999995 555544

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=95.62  E-value=0.01  Score=37.74  Aligned_cols=22  Identities=23%  Similarity=0.434  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-+++.|++|+|||++++.+..
T Consensus        30 ~~vll~G~~GtGKt~la~~i~~   51 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIASRLHY   51 (265)
T ss_dssp             SCEEEECCTTSCHHHHHHHHHH
T ss_pred             CCEEEECCCCCcHHHHHHHHHH
Confidence            4588999999999999965554

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=95.61  E-value=0.0054  Score=43.83  Aligned_cols=21  Identities=19%  Similarity=0.589  Sum_probs=17.6

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      ..+.|+|.+|+|||||+..+.
T Consensus       294 eVI~LVGpNGSGKTTLl~~LA  314 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLA  314 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHH
Confidence            457899999999999996544

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.61  E-value=0.0059  Score=39.19  Aligned_cols=22  Identities=23%  Similarity=0.638  Sum_probs=18.0

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-+++.|++|+|||++++.+..
T Consensus        51 ~~vll~G~~GtGKT~la~~la~   72 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIARRLAK   72 (310)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999965543

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.61  E-value=0.0076  Score=43.05  Aligned_cols=23  Identities=30%  Similarity=0.621  Sum_probs=18.0

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      .+.|+|++|+|||||++ .+.+..
T Consensus        27 i~gLiGpNGaGKSTLlk-iL~Gl~   49 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLK-ILAGEI   49 (538)
T ss_dssp             EEEEECCTTSSHHHHHH-HHTTSS
T ss_pred             EEEEECCCCCcHHHHHH-HHhcCC
Confidence            36799999999999995 554544

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=95.59  E-value=0.007  Score=37.68  Aligned_cols=23  Identities=22%  Similarity=0.387  Sum_probs=19.0

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..+|+|+|..|+||||+...+..
T Consensus         5 ~~~I~l~G~~GsGKsT~a~~La~   27 (217)
T 3be4_A            5 KHNLILIGAPGSGKGTQCEFIKK   27 (217)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999866543

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=95.59  E-value=0.0059  Score=37.33  Aligned_cols=22  Identities=32%  Similarity=0.380  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|+|.|..|+||||+...+..
T Consensus        10 ~~I~l~G~~GsGKsT~~~~L~~   31 (215)
T 1nn5_A           10 ALIVLEGVDRAGKSTQSRKLVE   31 (215)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999976653

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=95.57  E-value=0.0049  Score=40.55  Aligned_cols=22  Identities=23%  Similarity=0.392  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      --+++.|++|+|||++++.+..
T Consensus        45 ~~vll~G~~G~GKT~l~~~~~~   66 (387)
T 2v1u_A           45 SNALLYGLTGTGKTAVARLVLR   66 (387)
T ss_dssp             CCEEECBCTTSSHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999976654

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.55  E-value=0.0059  Score=40.18  Aligned_cols=20  Identities=25%  Similarity=0.549  Sum_probs=17.5

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      +++.|++|+|||++++.+..
T Consensus        39 ~ll~Gp~G~GKTtl~~~la~   58 (354)
T 1sxj_E           39 LLLYGPNGTGKKTRCMALLE   58 (354)
T ss_dssp             EEEECSTTSSHHHHHHTHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999976554

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=95.53  E-value=0.0061  Score=36.66  Aligned_cols=21  Identities=38%  Similarity=0.559  Sum_probs=17.8

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .|+|+|.+|+||||+...+..
T Consensus         4 ~I~l~G~~GsGKsT~a~~La~   24 (184)
T 2iyv_A            4 KAVLVGLPGSGKSTIGRRLAK   24 (184)
T ss_dssp             SEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999866553

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.53  E-value=0.0057  Score=39.52  Aligned_cols=21  Identities=19%  Similarity=0.550  Sum_probs=17.3

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      .-+++.|++|+|||++++.+.
T Consensus        68 ~~vll~G~~GtGKT~la~~la   88 (309)
T 3syl_A           68 LHMSFTGNPGTGKTTVALKMA   88 (309)
T ss_dssp             CEEEEEECTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            358999999999999996433

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=95.53  E-value=0.0065  Score=38.90  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=18.6

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..-+++.|++|+|||++++.+..
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~   86 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAE   86 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHH
Confidence            34588999999999999966554

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=95.52  E-value=0.0066  Score=36.27  Aligned_cols=21  Identities=19%  Similarity=0.157  Sum_probs=14.1

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      ..|++.|..|+||||+.+.+.
T Consensus         6 ~~I~l~G~~GsGKST~a~~La   26 (183)
T 2vli_A            6 PIIWINGPFGVGKTHTAHTLH   26 (183)
T ss_dssp             CEEEEECCC----CHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            468999999999999997654

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=95.52  E-value=0.0083  Score=37.13  Aligned_cols=22  Identities=32%  Similarity=0.492  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      +.|+|.|.+|+||||+.+.+..
T Consensus         5 ~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            5 YIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999976654

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=95.50  E-value=0.0044  Score=44.71  Aligned_cols=22  Identities=27%  Similarity=0.564  Sum_probs=18.2

Q ss_pred             eEEEECCCCCcchhhhhhhhhCc
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      .++|+|++|+|||||++-+. +.
T Consensus        47 ~iaIvG~nGsGKSTLL~~I~-Gl   68 (608)
T 3szr_A           47 AIAVIGDQSSGKSSVLEALS-GV   68 (608)
T ss_dssp             CEECCCCTTSCHHHHHHHHH-SC
T ss_pred             eEEEECCCCChHHHHHHHHh-CC
Confidence            48999999999999996554 44

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=95.45  E-value=0.0058  Score=43.09  Aligned_cols=19  Identities=26%  Similarity=0.545  Sum_probs=17.0

Q ss_pred             eEEEECCCCCcchhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRF   49 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~   49 (76)
                      .+.|+|++|+|||||++.|
T Consensus        41 ~~~l~G~nGsGKSTL~~~~   59 (525)
T 1tf7_A           41 STLVSGTSGTGKTLFSIQF   59 (525)
T ss_dssp             EEEEEESTTSSHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHH
Confidence            4789999999999999876

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.44  E-value=0.01  Score=42.36  Aligned_cols=22  Identities=23%  Similarity=0.602  Sum_probs=17.6

Q ss_pred             EEEECCCCCcchhhhhhhhhCcC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      +.|+|++|+|||||++ .+.+..
T Consensus       297 ~~i~G~nGsGKSTLl~-~l~Gl~  318 (538)
T 3ozx_A          297 IGILGPNGIGKTTFAR-ILVGEI  318 (538)
T ss_dssp             EEEECCTTSSHHHHHH-HHTTSS
T ss_pred             EEEECCCCCCHHHHHH-HHhCCC
Confidence            6799999999999995 554543

>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...

Probab=95.37  E-value=0.0094  Score=38.12  Aligned_cols=23  Identities=30%  Similarity=0.356  Sum_probs=19.0

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ...|+|.|..|+||||++..+..
T Consensus        24 ~~~I~ieG~~GsGKST~~~~L~~   46 (263)
T 1p5z_B           24 IKKISIEGNIAAGKSTFVNILKQ   46 (263)
T ss_dssp             CEEEEEECSTTSSHHHHHTTTGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46789999999999999965543

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=95.37  E-value=0.0089  Score=38.56  Aligned_cols=22  Identities=23%  Similarity=0.301  Sum_probs=18.7

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      .+.+++.|++|+||||+.+.+.
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la   30 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLA   30 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4679999999999999996554

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=95.36  E-value=0.0098  Score=37.87  Aligned_cols=24  Identities=29%  Similarity=0.433  Sum_probs=19.7

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..+.|.|.|.+|+||||+...+..
T Consensus        21 ~~~iI~I~G~~GSGKST~a~~L~~   44 (252)
T 1uj2_A           21 EPFLIGVSGGTASGKSSVCAKIVQ   44 (252)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHH
Confidence            357799999999999999965543

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=95.36  E-value=0.0082  Score=37.16  Aligned_cols=21  Identities=38%  Similarity=0.482  Sum_probs=17.6

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      ..++++|.+|+||||+.+.+.
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~   46 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELE   46 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHH
Confidence            468899999999999996544

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.35  E-value=0.011  Score=37.89  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=20.1

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      -..++++|++|+|||+|...+...
T Consensus        34 g~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           34 GLGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             TEEEEEECCCTTTTHHHHHHHHTT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            346899999999999999877754

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.34  E-value=0.0081  Score=38.76  Aligned_cols=22  Identities=27%  Similarity=0.489  Sum_probs=17.9

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      --++++|++|+|||++++.+..
T Consensus        48 ~~~ll~G~~GtGKt~la~~la~   69 (311)
T 4fcw_A           48 GSFLFLGPTGVGKTELAKTLAA   69 (311)
T ss_dssp             EEEEEESCSSSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3588999999999999965443

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.34  E-value=0.0078  Score=39.39  Aligned_cols=21  Identities=19%  Similarity=0.374  Sum_probs=17.4

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+++.|++|+|||+|++.+..
T Consensus        51 ~vLL~Gp~GtGKT~la~ala~   71 (301)
T 3cf0_A           51 GVLFYGPPGCGKTLLAKAIAN   71 (301)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEECCCCcCHHHHHHHHHH
Confidence            488999999999999965543

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.34  E-value=0.012  Score=42.01  Aligned_cols=23  Identities=22%  Similarity=0.481  Sum_probs=17.9

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      .+.|+|++|+|||||++ .+.+..
T Consensus       314 ~~~i~G~NGsGKSTLlk-~l~Gl~  336 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVK-MLAGVE  336 (538)
T ss_dssp             EEEEECCTTSSHHHHHH-HHHTSS
T ss_pred             EEEEECCCCCCHHHHHH-HHhCCC
Confidence            36799999999999995 444543

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=95.33  E-value=0.0081  Score=39.40  Aligned_cols=21  Identities=19%  Similarity=0.387  Sum_probs=17.9

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+++.|++|+|||++++.+..
T Consensus        57 ~vll~G~~GtGKT~la~~ia~   77 (338)
T 3pfi_A           57 HILFSGPAGLGKTTLANIISY   77 (338)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHH
Confidence            589999999999999976553

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=95.33  E-value=0.0077  Score=45.05  Aligned_cols=27  Identities=19%  Similarity=0.207  Sum_probs=23.2

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhC
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      .....||+++|..++|||||+.+++..
T Consensus        16 ~~~~rnI~IiG~~~~GKTTL~~~Ll~~   42 (842)
T 1n0u_A           16 VTNVRNMSVIAHVDHGKSTLTDSLVQR   42 (842)
T ss_dssp             GGGEEEEEEECCGGGTHHHHHHHHHHH
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHh
Confidence            345789999999999999999988753

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=95.31  E-value=0.018  Score=37.57  Aligned_cols=23  Identities=43%  Similarity=0.450  Sum_probs=19.5

Q ss_pred             ceeeEEEECCCCCcchhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~   50 (76)
                      ..+.|+|.|.+|+||||+...+.
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La   96 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLK   96 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHH
Confidence            35789999999999999997655

>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}

Probab=95.30  E-value=0.01  Score=38.46  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=18.7

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      .+++++.|++|||||+++.+..
T Consensus         6 ~l~I~~~~kgGvGKTt~a~~la   27 (228)
T 2r8r_A            6 RLKVFLGAAPGVGKTYAMLQAA   27 (228)
T ss_dssp             CEEEEEESSTTSSHHHHHHHHH
T ss_pred             eEEEEEECCCCCcHHHHHHHHH
Confidence            6899999999999999975433

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.30  E-value=0.0074  Score=39.90  Aligned_cols=21  Identities=19%  Similarity=0.279  Sum_probs=18.1

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|.|++|+|||++++.+..
T Consensus        47 ~vll~G~~G~GKT~la~~l~~   67 (384)
T 2qby_B           47 SNLFLGLTGTGKTFVSKYIFN   67 (384)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999976654

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.29  E-value=0.0088  Score=38.67  Aligned_cols=22  Identities=23%  Similarity=0.395  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|+++|.+|+||||+.+++..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999977665

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=95.29  E-value=0.0074  Score=39.91  Aligned_cols=21  Identities=14%  Similarity=0.545  Sum_probs=18.1

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+++.|++|+|||++++.+..
T Consensus        72 ~vLl~GppGtGKT~la~~la~   92 (368)
T 3uk6_A           72 AVLIAGQPGTGKTAIAMGMAQ   92 (368)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999976654

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=95.27  E-value=0.0083  Score=41.67  Aligned_cols=21  Identities=19%  Similarity=0.344  Sum_probs=17.4

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|+|++|+||||+++-++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg  189 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQ  189 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHh
Confidence            378999999999999965543

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=95.26  E-value=0.011  Score=37.51  Aligned_cols=23  Identities=13%  Similarity=0.251  Sum_probs=19.0

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      -..|++.|..|+||||++.++..
T Consensus        26 g~~i~i~G~~GsGKsT~~~~l~~   48 (229)
T 4eaq_A           26 SAFITFEGPEGSGKTTVINEVYH   48 (229)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CeEEEEEcCCCCCHHHHHHHHHH
Confidence            35688999999999999976554

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=95.26  E-value=0.0097  Score=41.28  Aligned_cols=23  Identities=35%  Similarity=0.514  Sum_probs=20.5

Q ss_pred             ccceeeEEEECCCCCcchhhhhh
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLR   48 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~   48 (76)
                      ....+|++|+|...+||||++++
T Consensus        37 ~~~~~klLLLG~geSGKSTi~KQ   59 (402)
T 1azs_C           37 YRATHRLLLLGAGESGKSTIVKQ   59 (402)
T ss_dssp             CTTEEEEEEEESTTSSHHHHHHH
T ss_pred             hhccceEEEecCCCCchhhHHHH
Confidence            45579999999999999999976

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.24  E-value=0.013  Score=42.49  Aligned_cols=22  Identities=23%  Similarity=0.528  Sum_probs=17.6

Q ss_pred             EEEECCCCCcchhhhhhhhhCcC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      +.|+|++|+|||||++ .+.+..
T Consensus       385 ~~i~G~NGsGKSTLlk-~l~Gl~  406 (607)
T 3bk7_A          385 IGIVGPNGIGKTTFVK-MLAGVE  406 (607)
T ss_dssp             EEEECCTTSSHHHHHH-HHHTSS
T ss_pred             EEEECCCCCCHHHHHH-HHhcCC
Confidence            6799999999999995 555543

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=95.24  E-value=0.0094  Score=38.28  Aligned_cols=22  Identities=27%  Similarity=0.484  Sum_probs=18.5

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|+++|.+|+||||+...+..
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~   26 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAK   26 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHH
Confidence            4689999999999999976553

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=95.23  E-value=0.0085  Score=42.59  Aligned_cols=20  Identities=25%  Similarity=0.517  Sum_probs=17.1

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .++|+|++|+||||+++-++
T Consensus       262 ~i~I~GptGSGKTTlL~aL~  281 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIM  281 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHG
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            48999999999999996544

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.21  E-value=0.009  Score=39.51  Aligned_cols=20  Identities=30%  Similarity=0.635  Sum_probs=17.4

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      +++.|++|+|||++++.+..
T Consensus        49 ~ll~Gp~G~GKTtla~~la~   68 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTIVALAR   68 (340)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999976554

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.20  E-value=0.011  Score=40.39  Aligned_cols=21  Identities=38%  Similarity=0.627  Sum_probs=18.0

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -|+|+|++|+|||+|...+..
T Consensus        42 lIvI~GPTgsGKTtLa~~LA~   62 (339)
T 3a8t_A           42 LLVLMGATGTGKSRLSIDLAA   62 (339)
T ss_dssp             EEEEECSTTSSHHHHHHHHHT
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999976664

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.20  E-value=0.008  Score=40.54  Aligned_cols=21  Identities=24%  Similarity=0.303  Sum_probs=18.2

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+.|+|++|+|||+|++.++.
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~  153 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAV  153 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467899999999999987774

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.18  E-value=0.0096  Score=38.92  Aligned_cols=20  Identities=25%  Similarity=0.617  Sum_probs=17.3

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      +++.|++|+|||++++.+..
T Consensus        61 ~ll~G~~G~GKT~la~~la~   80 (353)
T 1sxj_D           61 MLFYGPPGTGKTSTILALTK   80 (353)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            89999999999999976553

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*

Probab=95.17  E-value=0.0078  Score=39.05  Aligned_cols=22  Identities=27%  Similarity=0.504  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-+++.|++|+|||++++.+..
T Consensus        39 ~~vll~G~~GtGKT~la~~i~~   60 (324)
T 1hqc_A           39 EHLLLFGPPGLGKTTLAHVIAH   60 (324)
T ss_dssp             CCCEEECCTTCCCHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999976543

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=95.14  E-value=0.007  Score=35.50  Aligned_cols=21  Identities=19%  Similarity=0.202  Sum_probs=17.1

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      .-+++.|++|+|||++.+.+.
T Consensus        28 ~~vll~G~~GtGKt~lA~~i~   48 (143)
T 3co5_A           28 SPVFLTGEAGSPFETVARYFH   48 (143)
T ss_dssp             SCEEEEEETTCCHHHHHGGGC
T ss_pred             CcEEEECCCCccHHHHHHHHH
Confidence            358999999999999985443

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=95.09  E-value=0.011  Score=39.57  Aligned_cols=22  Identities=27%  Similarity=0.440  Sum_probs=19.0

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      ...++++|.+|+||||++..+.
T Consensus        56 ~~~i~i~G~~g~GKSTl~~~l~   77 (341)
T 2p67_A           56 TLRLGVTGTPGAGKSTFLEAFG   77 (341)
T ss_dssp             SEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEEcCCCCCHHHHHHHHH
Confidence            4678899999999999998765

>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20

Probab=95.09  E-value=0.011  Score=39.67  Aligned_cols=22  Identities=18%  Similarity=0.493  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-+++.|++|+|||++++.+..
T Consensus        73 ~~ill~Gp~GtGKT~la~~la~   94 (376)
T 1um8_A           73 SNILLIGPTGSGKTLMAQTLAK   94 (376)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHH
Confidence            4589999999999999965543

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=95.09  E-value=0.0095  Score=43.15  Aligned_cols=16  Identities=44%  Similarity=0.557  Sum_probs=14.7

Q ss_pred             EEEECCCCCcchhhhh
Q psy1355          32 LVLLGESAVGKSSLVL   47 (76)
Q Consensus        32 ivllG~~~vGKtsl~~   47 (76)
                      +.|+|++|+|||||++
T Consensus       351 vaIiGpnGsGKSTLl~  366 (670)
T 3ux8_A          351 VAVTGVSGSGKSTLVN  366 (670)
T ss_dssp             EEEECSTTSSHHHHHT
T ss_pred             EEEEeeCCCCHHHHHH
Confidence            6899999999999985

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.07  E-value=0.012  Score=40.01  Aligned_cols=21  Identities=24%  Similarity=0.506  Sum_probs=18.0

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|+|++|+|||+|..++..
T Consensus         5 ~i~i~GptgsGKt~la~~La~   25 (322)
T 3exa_A            5 LVAIVGPTAVGKTKTSVMLAK   25 (322)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHHH
Confidence            367899999999999987764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=95.06  E-value=0.011  Score=40.61  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-|+++|.+|+||||+.+++..
T Consensus       259 ~lIil~G~pGSGKSTla~~L~~  280 (416)
T 3zvl_A          259 EVVVAVGFPGAGKSTFIQEHLV  280 (416)
T ss_dssp             CEEEEESCTTSSHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4578899999999999987664

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=95.05  E-value=0.018  Score=41.74  Aligned_cols=26  Identities=19%  Similarity=0.230  Sum_probs=22.3

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      ....|.|+|.+++|||+|+++++...
T Consensus        37 ~~~~VaivG~pnvGKStLiN~L~g~~   62 (592)
T 1f5n_A           37 PMVVVAIVGLYRTGKSYLMNKLAGKK   62 (592)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred             CCcEEEEECCCCCCHHHHHHhHcCCC
Confidence            35778999999999999999887654

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=95.03  E-value=0.0086  Score=39.19  Aligned_cols=21  Identities=24%  Similarity=0.482  Sum_probs=17.8

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+++.|++|+|||++++.+..
T Consensus        47 ~vLl~G~~GtGKT~la~~la~   67 (350)
T 1g8p_A           47 GVLVFGDRGTGKSTAVRALAA   67 (350)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            389999999999999966554

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.03  E-value=0.011  Score=38.99  Aligned_cols=22  Identities=27%  Similarity=0.366  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      --+++.|++|+|||+|++.+..
T Consensus        52 ~~vLl~GppGtGKT~la~aia~   73 (322)
T 3eie_A           52 SGILLYGPPGTGKSYLAKAVAT   73 (322)
T ss_dssp             CEEEEECSSSSCHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHH
Confidence            3589999999999999965553

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.03  E-value=0.01  Score=38.87  Aligned_cols=20  Identities=25%  Similarity=0.142  Sum_probs=16.1

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      -+++.|++|+|||+|++.+.
T Consensus        38 ~lLl~GppGtGKT~la~aiA   57 (293)
T 3t15_A           38 ILGIWGGKGQGKSFQCELVF   57 (293)
T ss_dssp             EEEEEECTTSCHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            46677999999999996544

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=95.00  E-value=0.011  Score=39.18  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      --+++.|++|+|||+|++.+..
T Consensus        46 ~~iLL~GppGtGKT~la~ala~   67 (322)
T 1xwi_A           46 RGILLFGPPGTGKSYLAKAVAT   67 (322)
T ss_dssp             SEEEEESSSSSCHHHHHHHHHH
T ss_pred             ceEEEECCCCccHHHHHHHHHH
Confidence            3588999999999999976654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=95.00  E-value=0.012  Score=42.71  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=17.6

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ...+++++|..++|||||+.+++.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~   26 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQ   26 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            467999999999999999999875

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=94.99  E-value=0.012  Score=41.04  Aligned_cols=22  Identities=32%  Similarity=0.560  Sum_probs=17.9

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      -.++++|++|||||++++.+..
T Consensus       202 ~~~LL~G~pG~GKT~la~~la~  223 (468)
T 3pxg_A          202 NNPVLIGEPGVGKTAIAEGLAQ  223 (468)
T ss_dssp             CEEEEESCTTTTTHHHHHHHHH
T ss_pred             CCeEEECCCCCCHHHHHHHHHH
Confidence            3579999999999999965543

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=94.96  E-value=0.016  Score=42.06  Aligned_cols=22  Identities=36%  Similarity=0.818  Sum_probs=17.7

Q ss_pred             EEEECCCCCcchhhhhhhhhCcC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      +.++|++|+|||||++ .+.+..
T Consensus       381 v~iiG~NGsGKSTLlk-~l~Gl~  402 (608)
T 3j16_B          381 LVMMGENGTGKTTLIK-LLAGAL  402 (608)
T ss_dssp             EEEESCTTSSHHHHHH-HHHTSS
T ss_pred             EEEECCCCCcHHHHHH-HHhcCC
Confidence            5899999999999995 554543

>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}

Probab=94.95  E-value=0.013  Score=36.39  Aligned_cols=21  Identities=24%  Similarity=0.599  Sum_probs=17.7

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+++.|++|+|||+|+.+++.
T Consensus        32 l~~i~G~pG~GKT~l~l~~~~   52 (251)
T 2zts_A           32 TVLLTGGTGTGKTTFAAQFIY   52 (251)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            367889999999999988763

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=94.94  E-value=0.0097  Score=40.51  Aligned_cols=20  Identities=20%  Similarity=0.476  Sum_probs=19.1

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      +++++|..++|||||+.+++
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~   42 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLG   42 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            89999999999999999887

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=94.93  E-value=0.015  Score=36.59  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=19.6

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhh
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~   50 (76)
                      +.....|.|+|..|+||||+...+.
T Consensus        13 ~~~~~~i~i~G~~gsGKst~~~~l~   37 (236)
T 1q3t_A           13 KMKTIQIAIDGPASSGKSTVAKIIA   37 (236)
T ss_dssp             -CCCCEEEEECSSCSSHHHHHHHHH
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHH
Confidence            3445679999999999999986544

>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}

Probab=94.91  E-value=0.013  Score=41.18  Aligned_cols=21  Identities=33%  Similarity=0.406  Sum_probs=18.1

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|.|++|+|||+|+..+..
T Consensus       149 ~v~I~G~~GiGKTtLa~~~~~  169 (591)
T 1z6t_A          149 WVTIHGMAGCGKSVLAAEAVR  169 (591)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC
T ss_pred             eEEEEcCCCCCHHHHHHHHHh
Confidence            478999999999999987764

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=94.90  E-value=0.014  Score=42.92  Aligned_cols=25  Identities=12%  Similarity=0.088  Sum_probs=22.1

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhh
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ....+|+++|..++|||||+.+++.
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~   32 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILF   32 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999999999864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=94.90  E-value=0.015  Score=34.52  Aligned_cols=23  Identities=39%  Similarity=0.385  Sum_probs=18.3

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-.|+|.|..|+||||+.+.+..
T Consensus         7 ~~~i~l~G~~GsGKSTva~~La~   29 (168)
T 1zuh_A            7 MQHLVLIGFMGSGKSSLAQELGL   29 (168)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHHH
T ss_pred             cceEEEECCCCCCHHHHHHHHHH
Confidence            45688999999999999965543

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=94.87  E-value=0.016  Score=42.06  Aligned_cols=25  Identities=20%  Similarity=0.286  Sum_probs=20.0

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhh
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ....+++++|..++|||||+.+++.
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~   28 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLE   28 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHH
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHh
Confidence            3467999999999999999999875

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=94.86  E-value=0.005  Score=39.16  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=16.9

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      +++.|++|+|||+|++.+..
T Consensus        47 vll~G~~GtGKT~la~~la~   66 (268)
T 2r62_A           47 VLLVGPPGTGKTLLAKAVAG   66 (268)
T ss_dssp             CCCBCSSCSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78899999999999965543

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=94.84  E-value=0.013  Score=39.23  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-++|.|++|+|||+|++.+..
T Consensus       118 ~~vLl~GppGtGKT~la~aia~  139 (357)
T 3d8b_A          118 KGILLFGPPGTGKTLIGKCIAS  139 (357)
T ss_dssp             SEEEEESSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999966553

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=94.84  E-value=0.012  Score=38.97  Aligned_cols=21  Identities=24%  Similarity=0.537  Sum_probs=17.4

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      -.++++|++|+||||++..+.
T Consensus       106 ~vi~lvG~~GsGKTTl~~~LA  126 (296)
T 2px0_A          106 KYIVLFGSTGAGKTTTLAKLA  126 (296)
T ss_dssp             SEEEEEESTTSSHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHH
Confidence            367889999999999986544

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=94.84  E-value=0.013  Score=40.62  Aligned_cols=20  Identities=25%  Similarity=0.438  Sum_probs=17.0

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      -+++.|++|+|||+|++.+.
T Consensus       132 ~lll~Gp~G~GKTtLa~aia  151 (440)
T 2z4s_A          132 PLFIYGGVGLGKTHLLQSIG  151 (440)
T ss_dssp             CEEEECSSSSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            48899999999999996544

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=94.84  E-value=0.014  Score=38.69  Aligned_cols=21  Identities=33%  Similarity=0.493  Sum_probs=17.5

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      -.+++.|++|+|||+|+..+.
T Consensus       153 ~~lll~G~~GtGKT~La~aia  173 (308)
T 2qgz_A          153 KGLYLYGDMGIGKSYLLAAMA  173 (308)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHH
Confidence            468999999999999985443

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=94.83  E-value=0.014  Score=39.49  Aligned_cols=21  Identities=29%  Similarity=0.624  Sum_probs=17.9

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .++|+|++|+|||+|...+..
T Consensus         7 ~i~i~GptGsGKTtla~~La~   27 (323)
T 3crm_A            7 AIFLMGPTAAGKTDLAMALAD   27 (323)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999876553

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=94.83  E-value=0.013  Score=38.49  Aligned_cols=22  Identities=23%  Similarity=0.315  Sum_probs=15.5

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      +.|.|.|++|+||||+.+.+..
T Consensus         6 ~iIgItG~sGSGKSTva~~L~~   27 (290)
T 1a7j_A            6 PIISVTGSSGAGTSTVKHTFDQ   27 (290)
T ss_dssp             CEEEEESCC---CCTHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            4588999999999999976654

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=94.79  E-value=0.014  Score=38.86  Aligned_cols=21  Identities=14%  Similarity=0.455  Sum_probs=17.5

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      -.++++|++|+||||++..+.
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA  125 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLA  125 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHH
Confidence            457899999999999997654

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=94.78  E-value=0.014  Score=39.43  Aligned_cols=21  Identities=29%  Similarity=0.646  Sum_probs=17.8

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|+|++|+|||+|..++..
T Consensus        12 ~i~i~GptgsGKt~la~~La~   32 (316)
T 3foz_A           12 AIFLMGPTASGKTALAIELRK   32 (316)
T ss_dssp             EEEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHH
Confidence            467899999999999977664

>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*

Probab=94.78  E-value=0.021  Score=40.29  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      --|.|+|.+|+|||+|..++.+
T Consensus       153 ~vv~I~G~gGvGKTtLA~~v~~  174 (549)
T 2a5y_B          153 FFLFLHGRAGSGKSVIASQALS  174 (549)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHH
Confidence            4467999999999999988774

>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*

Probab=94.78  E-value=0.014  Score=39.19  Aligned_cols=21  Identities=29%  Similarity=0.414  Sum_probs=17.6

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|.|++|+|||+|++.+..
T Consensus        86 ~iLL~GppGtGKT~la~ala~  106 (355)
T 2qp9_X           86 GILLYGPPGTGKSYLAKAVAT  106 (355)
T ss_dssp             CEEEECSTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            489999999999999965553

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=94.75  E-value=0.014  Score=34.75  Aligned_cols=17  Identities=35%  Similarity=0.559  Sum_probs=14.5

Q ss_pred             EEEECCCCCcchhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLR   48 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~   48 (76)
                      .+++|+.|+|||+|+.-
T Consensus        26 ~~I~G~NGsGKStil~A   42 (149)
T 1f2t_A           26 NLIIGQNGSGKSSLLDA   42 (149)
T ss_dssp             EEEECCTTSSHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHH
Confidence            47889999999999843

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=94.74  E-value=0.014  Score=39.57  Aligned_cols=24  Identities=25%  Similarity=0.445  Sum_probs=20.5

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      ..+++++|.+++|||||++.++..
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~  185 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEE  185 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhh
Confidence            357999999999999999887753

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=94.73  E-value=0.014  Score=40.63  Aligned_cols=21  Identities=29%  Similarity=0.544  Sum_probs=17.6

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+++.|++|+|||++++.+..
T Consensus        52 ~vLL~GppGtGKTtlAr~ia~   72 (447)
T 3pvs_A           52 SMILWGPPGTGKTTLAEVIAR   72 (447)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999965543

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=94.71  E-value=0.015  Score=39.57  Aligned_cols=22  Identities=27%  Similarity=0.658  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-|+|+|++|+|||+|..++..
T Consensus         8 ~lI~I~GptgSGKTtla~~La~   29 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAK   29 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHH
Confidence            3588999999999999976554

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=94.70  E-value=0.011  Score=39.36  Aligned_cols=21  Identities=24%  Similarity=0.550  Sum_probs=16.8

Q ss_pred             eEEE--ECCCCCcchhhhhhhhh
Q psy1355          31 KLVL--LGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivl--lG~~~vGKtsl~~~~~~   51 (76)
                      -++|  .|++|+|||+|++.+..
T Consensus        52 ~~li~i~G~~G~GKT~L~~~~~~   74 (412)
T 1w5s_A           52 NMIYGSIGRVGIGKTTLAKFTVK   74 (412)
T ss_dssp             EEEEECTTCCSSSHHHHHHHHHH
T ss_pred             EEEEeCcCcCCCCHHHHHHHHHH
Confidence            3555  69999999999977664

>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*

Probab=94.67  E-value=0.016  Score=38.09  Aligned_cols=21  Identities=24%  Similarity=0.450  Sum_probs=17.7

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+++.|+.|+|||++++.+..
T Consensus        40 ~~ll~G~~G~GKT~la~~la~   60 (373)
T 1jr3_A           40 AYLFSGTRGVGKTSIARLLAK   60 (373)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            368999999999999976654

>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}

Probab=94.67  E-value=0.023  Score=37.41  Aligned_cols=23  Identities=17%  Similarity=0.316  Sum_probs=18.2

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..-+++.|++|+|||++++.+..
T Consensus        25 ~~~vLi~Ge~GtGKt~lAr~i~~   47 (304)
T 1ojl_A           25 DATVLIHGDSGTGKELVARALHA   47 (304)
T ss_dssp             TSCEEEESCTTSCHHHHHHHHHH
T ss_pred             CCcEEEECCCCchHHHHHHHHHH
Confidence            34588999999999999865443

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=94.66  E-value=0.017  Score=36.33  Aligned_cols=23  Identities=30%  Similarity=0.585  Sum_probs=19.4

Q ss_pred             eeEEEECCCCCcchhhhhhhhhC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      .-+++.|++|+|||++...++..
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            45889999999999999877754

>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}

Probab=94.65  E-value=0.014  Score=42.24  Aligned_cols=15  Identities=60%  Similarity=0.705  Sum_probs=14.0

Q ss_pred             EEEECCCCCcchhhh
Q psy1355          32 LVLLGESAVGKSSLV   46 (76)
Q Consensus        32 ivllG~~~vGKtsl~   46 (76)
                      +.|+|++|+|||||+
T Consensus        47 ~~liGpNGaGKSTLl   61 (670)
T 3ux8_A           47 VVLTGLSGSGKSSLA   61 (670)
T ss_dssp             EEEECSTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHh
Confidence            689999999999996

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=94.64  E-value=0.016  Score=39.13  Aligned_cols=22  Identities=27%  Similarity=0.374  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-++|.|++|+|||+|++.+..
T Consensus       149 ~~vLL~GppGtGKT~la~aia~  170 (389)
T 3vfd_A          149 RGLLLFGPPGNGKTMLAKAVAA  170 (389)
T ss_dssp             SEEEEESSTTSCHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            4689999999999999976553

>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A

Probab=94.62  E-value=0.015  Score=41.28  Aligned_cols=20  Identities=40%  Similarity=0.526  Sum_probs=16.6

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      -++++|++|+|||+|++.+.
T Consensus       110 ~vll~Gp~GtGKTtlar~ia  129 (543)
T 3m6a_A          110 ILCLAGPPGVGKTSLAKSIA  129 (543)
T ss_dssp             EEEEESSSSSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47899999999999996443

>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A

Probab=94.62  E-value=0.017  Score=38.56  Aligned_cols=21  Identities=24%  Similarity=0.474  Sum_probs=17.6

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      .-+++.|++|+|||++.+.+.
T Consensus        52 ~~vll~GppGtGKT~la~~ia   72 (363)
T 3hws_A           52 SNILLIGPTGSGKTLLAETLA   72 (363)
T ss_dssp             CCEEEECCTTSSHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHH
Confidence            468999999999999996544

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=94.60  E-value=0.012  Score=38.60  Aligned_cols=21  Identities=19%  Similarity=0.316  Sum_probs=17.7

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+++.|++|+|||+|++.+..
T Consensus        48 ~vll~G~pGtGKT~la~~la~   68 (331)
T 2r44_A           48 HILLEGVPGLAKTLSVNTLAK   68 (331)
T ss_dssp             CEEEESCCCHHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            589999999999999965543

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=94.57  E-value=0.013  Score=40.33  Aligned_cols=24  Identities=25%  Similarity=0.364  Sum_probs=20.9

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      ...|.++|.++||||||++.++..
T Consensus        72 ~a~V~ivG~PNvGKSTL~n~Lt~~   95 (376)
T 4a9a_A           72 VASVGFVGFPSVGKSTLLSKLTGT   95 (376)
T ss_dssp             SEEEEEECCCCHHHHHHHHHHHSB
T ss_pred             CCeEEEECCCCCCHHHHHHHHhCC
Confidence            468999999999999999887753

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=94.56  E-value=0.017  Score=39.63  Aligned_cols=20  Identities=20%  Similarity=0.348  Sum_probs=17.0

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .++++|++|+|||||++.+.
T Consensus       171 ~i~l~G~~GsGKSTl~~~l~  190 (377)
T 1svm_A          171 YWLFKGPIDSGKTTLAAALL  190 (377)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999996544

>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*

Probab=94.53  E-value=0.015  Score=40.95  Aligned_cols=21  Identities=38%  Similarity=0.613  Sum_probs=18.2

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .+.|+|++|+|||+|++.++.
T Consensus       283 i~~i~G~~GsGKSTLl~~l~g  303 (525)
T 1tf7_A          283 IILATGATGTGKTLLVSRFVE  303 (525)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            477899999999999987764

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.50  E-value=0.021  Score=43.68  Aligned_cols=23  Identities=30%  Similarity=0.473  Sum_probs=18.9

Q ss_pred             EEEECCCCCcchhhhhhhhhCcC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      +.|+|++|+|||||++-+..+..
T Consensus       464 v~LiGpNGsGKSTLLk~LagG~i  486 (986)
T 2iw3_A          464 YGICGPNGCGKSTLMRAIANGQV  486 (986)
T ss_dssp             EEEECSTTSSHHHHHHHHHHTCS
T ss_pred             EEEECCCCCCHHHHHHHHhCCCc
Confidence            67999999999999976665543

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=94.50  E-value=0.019  Score=36.94  Aligned_cols=21  Identities=33%  Similarity=0.627  Sum_probs=17.9

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+++.|+.|+|||++++.+..
T Consensus        48 ~~ll~G~~G~GKT~la~~l~~   68 (327)
T 1iqp_A           48 HLLFAGPPGVGKTTAALALAR   68 (327)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECcCCCCHHHHHHHHHH
Confidence            389999999999999976654

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=94.45  E-value=0.023  Score=34.48  Aligned_cols=20  Identities=40%  Similarity=0.451  Sum_probs=16.9

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .|.+.|.+|+||||+.+.+.
T Consensus         4 ~i~i~G~~GsGKst~~~~la   23 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVA   23 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57899999999999986554

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=94.44  E-value=0.013  Score=42.11  Aligned_cols=22  Identities=27%  Similarity=0.460  Sum_probs=18.2

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      -..++|+|.+|+|||||++.+.
T Consensus       369 G~iI~LiG~sGSGKSTLar~La  390 (552)
T 3cr8_A          369 GFTVFFTGLSGAGKSTLARALA  390 (552)
T ss_dssp             CEEEEEEESSCHHHHHHHHHHH
T ss_pred             ceEEEEECCCCChHHHHHHHHH
Confidence            3568999999999999996544

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=94.39  E-value=0.017  Score=39.08  Aligned_cols=17  Identities=41%  Similarity=0.464  Sum_probs=14.7

Q ss_pred             EEEECCCCCcchhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLR   48 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~   48 (76)
                      .+|+|++|+|||||+.-
T Consensus        26 ~~i~G~NGaGKTTll~a   42 (365)
T 3qf7_A           26 TVVEGPNGAGKSSLFEA   42 (365)
T ss_dssp             EEEECCTTSSHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHH
Confidence            55899999999999854

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.36  E-value=0.021  Score=36.71  Aligned_cols=20  Identities=20%  Similarity=0.466  Sum_probs=17.5

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      +++.|+.|+|||++++.+..
T Consensus        45 ~ll~G~~G~GKt~la~~l~~   64 (323)
T 1sxj_B           45 MIISGMPGIGKTTSVHCLAH   64 (323)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECcCCCCHHHHHHHHHH
Confidence            89999999999999976654

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=94.33  E-value=0.016  Score=39.39  Aligned_cols=24  Identities=25%  Similarity=0.512  Sum_probs=20.5

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      ..+++++|.+++|||||++.++..
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~  183 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKE  183 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhh
Confidence            357999999999999999887753

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=94.32  E-value=0.017  Score=44.16  Aligned_cols=23  Identities=26%  Similarity=0.687  Sum_probs=18.2

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      .+.|+|++|+|||||++ .+.+..
T Consensus       701 ivaIiGpNGSGKSTLLk-lLaGll  723 (986)
T 2iw3_A          701 RIAVIGPNGAGKSTLIN-VLTGEL  723 (986)
T ss_dssp             EEEECSCCCHHHHHHHH-HHTTSS
T ss_pred             EEEEECCCCCCHHHHHH-HHhCCC
Confidence            36799999999999995 555543

>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A

Probab=94.31  E-value=0.021  Score=36.60  Aligned_cols=20  Identities=25%  Similarity=0.549  Sum_probs=17.4

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      +++.|+.|+|||++++.+..
T Consensus        41 ~ll~G~~G~GKt~la~~l~~   60 (319)
T 2chq_A           41 LLFSGPPGTGKTATAIALAR   60 (319)
T ss_dssp             EEEESSSSSSHHHHHHHHHH
T ss_pred             EEEECcCCcCHHHHHHHHHH
Confidence            89999999999999976654

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=94.29  E-value=0.021  Score=40.18  Aligned_cols=21  Identities=19%  Similarity=0.373  Sum_probs=17.7

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+++.|++|+|||++++.+..
T Consensus        79 ~lLL~GppGtGKTtla~~la~   99 (516)
T 1sxj_A           79 AAMLYGPPGIGKTTAAHLVAQ   99 (516)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            588999999999999976554

>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}

Probab=94.22  E-value=0.019  Score=39.12  Aligned_cols=21  Identities=24%  Similarity=0.523  Sum_probs=17.6

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+.|.|++|+|||+|+.+++.
T Consensus        63 i~~I~GppGsGKSTLal~la~   83 (356)
T 3hr8_A           63 IVEIFGQESSGKTTLALHAIA   83 (356)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            367889999999999987664

>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2

Probab=94.22  E-value=0.02  Score=38.60  Aligned_cols=23  Identities=26%  Similarity=0.583  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCcchhhhhhhhhC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      .-++++|++|+|||++...++..
T Consensus       145 ~~vl~~G~sG~GKSt~a~~l~~~  167 (314)
T 1ko7_A          145 VGVLITGDSGIGKSETALELIKR  167 (314)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHhc
Confidence            35899999999999999877764

>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}

Probab=94.16  E-value=0.023  Score=40.72  Aligned_cols=21  Identities=33%  Similarity=0.529  Sum_probs=17.8

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++++|++|+|||+|++.+..
T Consensus        62 ~vll~Gp~GtGKTtlar~ia~   82 (604)
T 3k1j_A           62 HVLLIGEPGTGKSMLGQAMAE   82 (604)
T ss_dssp             CEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHhc
Confidence            589999999999999965544

>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}

Probab=94.16  E-value=0.024  Score=37.48  Aligned_cols=21  Identities=14%  Similarity=0.434  Sum_probs=18.0

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|.|++|+|||+|+.+++.
T Consensus        70 l~li~G~pG~GKTtl~l~ia~   90 (315)
T 3bh0_A           70 FVLIAARPSMGKTAFALKQAK   90 (315)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            378889999999999988764

>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12

Probab=94.14  E-value=0.022  Score=37.65  Aligned_cols=19  Identities=21%  Similarity=0.412  Sum_probs=15.9

Q ss_pred             eEEEECCCCCcchhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRF   49 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~   49 (76)
                      -.+++|++|+|||+|+.-+
T Consensus        26 ~~~i~G~NGsGKS~ll~ai   44 (322)
T 1e69_A           26 VTAIVGPNGSGKSNIIDAI   44 (322)
T ss_dssp             EEEEECCTTTCSTHHHHHH
T ss_pred             cEEEECCCCCcHHHHHHHH
Confidence            4678999999999999543

>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A

Probab=94.10  E-value=0.024  Score=39.22  Aligned_cols=22  Identities=27%  Similarity=0.398  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      --++|.|++|+|||+|++.+..
T Consensus       168 ~~vLL~GppGtGKT~lA~aia~  189 (444)
T 2zan_A          168 RGILLFGPPGTGKSYLAKAVAT  189 (444)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHH
Confidence            3588999999999999976554

>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*

Probab=94.10  E-value=0.021  Score=39.84  Aligned_cols=21  Identities=33%  Similarity=0.653  Sum_probs=17.6

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -|+|+|++|+|||+|..++..
T Consensus         4 ~i~i~GptgsGKttla~~La~   24 (409)
T 3eph_A            4 VIVIAGTTGVGKSQLSIQLAQ   24 (409)
T ss_dssp             EEEEEECSSSSHHHHHHHHHH
T ss_pred             EEEEECcchhhHHHHHHHHHH
Confidence            468899999999999976654

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=94.10  E-value=0.027  Score=44.22  Aligned_cols=25  Identities=16%  Similarity=0.204  Sum_probs=22.3

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhh
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ...++|+++|..++|||||+.+++.
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~  318 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITT  318 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHh
Confidence            3468999999999999999998875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	76
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	6e-14
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	4e-12
d1c1ya_	167	c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId:	4e-12
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	5e-12
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	6e-12
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	8e-12
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	1e-11
d1yzqa1	164	c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [Ta	1e-11
d2bmja1	175	c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {H	2e-11
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	3e-11
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	3e-11
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	4e-11
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	4e-11
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	5e-11
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	6e-11
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	8e-11
d1m7ba_	179	c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [T	1e-10
d2atxa1	185	c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [Tax	1e-10
d2atva1	168	c.37.1.8 (A:5-172) Ras-like estrogen-regulated gro	1e-10
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	1e-10
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	1e-10
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	1e-10
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	2e-10
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	2e-10
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	2e-10
d1z08a1	167	c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [T	3e-10
d1x1ra1	169	c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRa	3e-10
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	3e-10
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	4e-10
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	4e-10
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	5e-10
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	6e-10
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	7e-10
d2gjsa1	168	c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [Tax	9e-10
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	1e-09
d2bcjq2	200	c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha sub	2e-09
d1xtqa1	167	c.37.1.8 (A:3-169) GTP-binding protein RheB {Human	2e-09
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-09
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	2e-09
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	2e-09
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	4e-09
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	5e-09
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	5e-09
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-08
d1azta2	221	c.37.1.8 (A:35-65,A:202-391) Transducin (alpha sub	2e-08
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	5e-08
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	9e-08
d1zcba2	200	c.37.1.8 (A:47-75,A:202-372) Transducin (alpha sub	1e-07
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-07
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	1e-07
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	1e-07
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	2e-07
d1svsa1	195	c.37.1.8 (A:32-60,A:182-347) Transducin (alpha sub	3e-07
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	5e-07
d1moza_	182	c.37.1.8 (A:) ADP-ribosylation factor {Baker's yea	1e-06
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-06
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	7e-04
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	0.004

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.4 bits (145), Expect = 6e-14
 Identities = 35/40 (87%), Positives = 38/40 (95%)

Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          KICQ+KLVLLGESAVGKSSLVLRFV+GQFHE+QESTIG  
Sbjct: 3  KICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAA 42

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.7 bits (133), Expect = 4e-12
 Identities = 17/48 (35%), Positives = 24/48 (50%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW 76
          +YK+V+LG   VGKS+L ++FV G F E  + TI              
Sbjct: 3  EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSP 50

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 4e-12
 Identities = 18/35 (51%), Positives = 25/35 (71%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +YKLV+LG   VGKS+L ++FV+G F E  + TI 
Sbjct: 3  EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIE 37

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 5e-12
 Identities = 13/37 (35%), Positives = 23/37 (62%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          +YKLV++G   VGKS+L ++ ++  F +  + TI   
Sbjct: 3  EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDS 39

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 6e-12
 Identities = 12/35 (34%), Positives = 21/35 (60%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          + KLV++G+ A GK+ L++   + QF E    T+ 
Sbjct: 2  RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVF 36

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 8e-12
 Identities = 10/34 (29%), Positives = 19/34 (55%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           K V++G+ AVGK+ L++ +   +F      T+ 
Sbjct: 4  IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVF 37

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 55.1 bits (131), Expect = 1e-11
 Identities = 14/47 (29%), Positives = 25/47 (53%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW 76
           K+++LG+S VGK+SL+ ++V  +F    ++TIG             
Sbjct: 3  LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDR 49

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 1e-11
 Identities = 17/47 (36%), Positives = 25/47 (53%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW 76
          +KLV LGE +VGK+SL+ RF+   F    ++TIG          +  
Sbjct: 1  FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDR 47

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 2e-11
 Identities = 14/48 (29%), Positives = 25/48 (52%)

Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ 74
          I + +L +LG++  GKSSL+ RF+ G +   +++           D Q
Sbjct: 3  IPELRLGVLGDARSGKSSLIHRFLTGSYQVLEKTESEQYKKEMLVDGQ 50

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 3e-11
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          Y++ + G   VGKSSLVLRFV+G F E    T+   
Sbjct: 3  YRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDT 38

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 3e-11
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          K   +K++LLG+  VGKSSL+ R+V  +F      TIG  
Sbjct: 3  KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVE 42

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.3 bits (127), Expect = 4e-11
 Identities = 17/36 (47%), Positives = 22/36 (61%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          +KL+L+G S VGKS L+LRF    +     STIG  
Sbjct: 7  FKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVD 42

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.2 bits (127), Expect = 4e-11
 Identities = 15/34 (44%), Positives = 23/34 (67%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +KL+L+G+S VGK+ ++ RF    F+    STIG
Sbjct: 7  FKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIG 40

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 5e-11
 Identities = 13/34 (38%), Positives = 23/34 (67%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          Q+KLVL+G+   GK++ V R + G+F +   +T+
Sbjct: 3  QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATL 36

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 6e-11
 Identities = 13/35 (37%), Positives = 23/35 (65%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +Y+LV++G   VGKS+L ++F++  F    + TI 
Sbjct: 5  KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIE 39

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.6 bits (125), Expect = 8e-11
 Identities = 12/36 (33%), Positives = 22/36 (61%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
           KL+ LG+S VGK++ + R+   +F+    +T+G  
Sbjct: 6  IKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGID 41

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.4 bits (124), Expect = 1e-10
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          + K+V++G+S  GK++L+  F +  F E    T+
Sbjct: 2  KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTV 35

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 1e-10
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
           K V++G+ AVGK+ L++ +    F E    T+
Sbjct: 10 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTV 42

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.9 bits (123), Expect = 1e-10
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW 76
          + KL + G + VGKS+LV+RF+  +F    + T+              
Sbjct: 2  EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEV 49

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.0 bits (123), Expect = 1e-10
 Identities = 15/34 (44%), Positives = 25/34 (73%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K++++G+S VGK+ L  RF  G+F +  E+TIG
Sbjct: 3  FKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIG 36

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (123), Expect = 1e-10
 Identities = 13/36 (36%), Positives = 23/36 (63%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          +K +++G++ VGKS L+L+F   +F    + TIG  
Sbjct: 4  FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVE 39

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.7 bits (123), Expect = 1e-10
 Identities = 16/34 (47%), Positives = 25/34 (73%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           K++L+G+S VGKS L++RFV  +F+    +TIG
Sbjct: 3  MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIG 36

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 51.5 bits (122), Expect = 2e-10
 Identities = 13/47 (27%), Positives = 22/47 (46%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW 76
          +K++++G   VGKS+L L+F+  +F E  E T               
Sbjct: 5  HKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE 51

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (122), Expect = 2e-10
 Identities = 17/34 (50%), Positives = 24/34 (70%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          +K+VL+G + VGK+ LV RF +G F   Q +TIG
Sbjct: 6  FKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIG 39

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.2 bits (121), Expect = 2e-10
 Identities = 24/50 (48%), Positives = 28/50 (56%)

Query: 27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW 76
          +   KLVLLGE+AVGKSS+VLRFV   F E +E TIG             
Sbjct: 1  VTSIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEH 50

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (121), Expect = 3e-10
 Identities = 18/48 (37%), Positives = 28/48 (58%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW 76
           +K+VLLGE  VGK+SLVLR+   +F++   +T+G        +  G 
Sbjct: 3  SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGK 50

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.8 bits (120), Expect = 3e-10
 Identities = 15/47 (31%), Positives = 23/47 (48%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW 76
          YKLV++G+  VGKS+L ++F +  F    + TI             W
Sbjct: 5  YKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQW 51

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (120), Expect = 3e-10
 Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 1/49 (2%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHE-YQESTIGGCGNVPGRDRQGW 76
           +KLV++G   VGKS+L ++F++  F   Y  +       +   D    
Sbjct: 6  THKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPA 54

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 4e-10
 Identities = 13/37 (35%), Positives = 22/37 (59%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
           +K++L+G+S VGK+ L++RF  G F      +  G 
Sbjct: 6  AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGI 42

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 4e-10
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          +K +++G+  VGKS L+ +F   +F      TIG  
Sbjct: 5  FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVE 40

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 5e-10
 Identities = 15/34 (44%), Positives = 21/34 (61%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
          + K+ LLG++ VGKSS++ RFV   F      TI
Sbjct: 4  ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTI 37

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.3 bits (119), Expect = 6e-10
 Identities = 18/36 (50%), Positives = 27/36 (75%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          +K+VL+G+S VGKS+L+ RF R +F+   +STIG  
Sbjct: 5  FKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVE 40

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.1 bits (118), Expect = 7e-10
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW 76
           K+++LG+S VGK+SL+ R+V  ++ +  ++TIG           G 
Sbjct: 3  LKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGD 49

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 9e-10
 Identities = 13/47 (27%), Positives = 19/47 (40%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW 76
          YK++LLG   VGKS+L   F   +     E+           D +  
Sbjct: 2  YKVLLLGAPGVGKSALARIFGGVEDGPEAEAAGHTYDRSIVVDGEEA 48

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.5 bits (117), Expect = 1e-09
 Identities = 13/40 (32%), Positives = 23/40 (57%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV 68
           +K++++G S+VGK+S + R+    F     ST+G    V
Sbjct: 5  MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKV 44

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.2 bits (116), Expect = 2e-09
 Identities = 10/35 (28%), Positives = 15/35 (42%), Gaps = 2/35 (5%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          + KL+LLG    GKS+ + +            T G
Sbjct: 2  ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTG 34

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 2e-09
 Identities = 16/37 (43%), Positives = 23/37 (62%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
            K+ +LG  +VGKSSL ++FV GQF +  + TI   
Sbjct: 4  SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENT 40

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 2e-09
 Identities = 10/34 (29%), Positives = 18/34 (52%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTI 62
            K V++G+ AVGK+ L++ +    F      T+
Sbjct: 5  AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTV 38

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.7 bits (115), Expect = 2e-09
 Identities = 17/36 (47%), Positives = 23/36 (63%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
           K++++GES VGKSSL+LRF    F     +TIG  
Sbjct: 8  LKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVD 43

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 2e-09
 Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 1/48 (2%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQF-HEYQESTIGGCGNVPGRDRQGW 76
          Y++VL+GE  VGKS+L   F       +     +G           G 
Sbjct: 4  YRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGE 51

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (113), Expect = 4e-09
 Identities = 11/36 (30%), Positives = 21/36 (58%)

Query: 30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC 65
          +K +++G +  GKS L+ +F+  +F +    TIG  
Sbjct: 6  FKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVE 41

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.8 bits (112), Expect = 5e-09
 Identities = 15/46 (32%), Positives = 24/46 (52%)

Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW 76
          K+V++G  AVGKSS++ R+ +G F +  + TIG             
Sbjct: 4  KMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDE 49

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 5e-09
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 61
          + +L L+G    GK++ V     GQF+E    T
Sbjct: 2  EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPT 34

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 1e-08
 Identities = 7/48 (14%), Positives = 21/48 (43%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW 76
          + ++++LG    GK++++ R   G+      +       V  ++ +  
Sbjct: 5  EMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVETVTYKNLKFQ 52

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} Length = 221

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (110), Expect = 2e-08
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 4/35 (11%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           ++L+LLG    GKS++V +            T G
Sbjct: 6  THRLLLLGAGESGKSTIVKQMRILHV----VLTSG 36

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 45.1 bits (105), Expect = 5e-08
 Identities = 8/48 (16%), Positives = 16/48 (33%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW 76
            KLV LG    GK++L+      +  ++  +       +        
Sbjct: 13 TGKLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTFT 60

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 9e-08
 Identities = 5/48 (10%), Positives = 21/48 (43%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW 76
          ++K++++G    GK++++ +F   +      +       +   + +  
Sbjct: 15 EHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFL 62

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} Length = 200

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.5 bits (104), Expect = 1e-07
 Identities = 10/35 (28%), Positives = 17/35 (48%), Gaps = 3/35 (8%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
            K++LLG    GKS+ + +    +    Q+ T G
Sbjct: 2  LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKG 33

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 43.9 bits (102), Expect = 1e-07
 Identities = 6/42 (14%), Positives = 20/42 (47%)

Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRD 72
          +++++G  A GK++++ +   G+      +       V  ++
Sbjct: 2  RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKN 43

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.9 bits (102), Expect = 1e-07
 Identities = 8/46 (17%), Positives = 17/46 (36%)

Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQGW 76
          KL+ LG    GK++L+      +    Q +       +   + +  
Sbjct: 2  KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFT 47

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 1e-07
 Identities = 6/30 (20%), Positives = 15/30 (50%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQ 58
          + +L++LG    GK++++ +F         
Sbjct: 2  ELRLLMLGLDNAGKTTILKKFNGEDVDTIS 31

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 2e-07
 Identities = 7/33 (21%), Positives = 18/33 (54%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 61
          + ++++LG  A GK++++ +   GQ      + 
Sbjct: 12 EMRILMLGLDAAGKTTILYKLKLGQSVTTIPTV 44

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.4 bits (101), Expect = 3e-07
 Identities = 10/35 (28%), Positives = 16/35 (45%), Gaps = 5/35 (14%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
          + KL+LLG    GKS++V +           +  G
Sbjct: 2  EVKLLLLGAGESGKSTIVKQMKIIHE-----AGTG 31

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.7 bits (99), Expect = 5e-07
 Identities = 8/33 (24%), Positives = 19/33 (57%), Gaps = 1/33 (3%)

Query: 31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG 63
           ++ +G    GK+ L +R + GQ+ +  +++I 
Sbjct: 2  AVLFVGLCDSGKTLLFVRLLTGQYRDT-QTSIT 33

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} Length = 182

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

 Score = 41.5 bits (96), Expect = 1e-06
 Identities = 6/30 (20%), Positives = 17/30 (56%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQ 58
          + ++++LG    GK++++ R   G+    +
Sbjct: 17 ELRILILGLDGAGKTTILYRLQIGEVVTTK 46

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 40.3 bits (93), Expect = 3e-06
 Identities = 6/33 (18%), Positives = 15/33 (45%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQEST 61
          + +++LLG    GK++L+ +           + 
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQ 48

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 33.8 bits (76), Expect = 7e-04
 Identities = 6/28 (21%), Positives = 11/28 (39%)

Query: 29 QYKLVLLGESAVGKSSLVLRFVRGQFHE 56
          Q  +++ G    GK+SL+          
Sbjct: 3  QPSIIIAGPQNSGKTSLLTLLTTDSVRP 30

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 31.6 bits (70), Expect = 0.004
 Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 6/52 (11%)

Query: 31 KLVLLGESAVGKSSLVLRFVR------GQFHEYQESTIGGCGNVPGRDRQGW 76
          K+V+ G    GKSSL+                     +    ++ G      
Sbjct: 3  KVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPLHII 54

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	76
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.31
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.26
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.23
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.23
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.22
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.21
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.21
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.21
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.17
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.17
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.16
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.16
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.15
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.15
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.15
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.15
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.14
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.13
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.12
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.12
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.11
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.11
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.11
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.11
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.1
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.1
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.1
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.07
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.07
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.06
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.05
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.0
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	98.95
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	98.94
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	98.91
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	98.9
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.84
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	98.76
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	98.71
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.7
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	98.68
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.67
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	98.65
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	98.62
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	98.55
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	98.42
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	98.41
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	98.38
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	98.32
d2fh5b1	207	Signal recognition particle receptor beta-subunit	98.29
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	98.19
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	98.03
d1nrjb_	209	Signal recognition particle receptor beta-subunit	98.01
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.98
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	97.97
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.96
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.94
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.93
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.91
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.89
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.87
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.87
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	97.86
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	97.86
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	97.84
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	97.82
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	97.79
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	97.73
d1g2912	240	Maltose transport protein MalK, N-terminal domain	97.67
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	97.66
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	97.61
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	97.61
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.6
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	97.57
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	97.55
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	97.53
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.51
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.45
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	97.45
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	97.35
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.34
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	97.31
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.31
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	97.3
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.28
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	97.26
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.23
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.22
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.21
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.2
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.19
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.16
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.16
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	97.14
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	97.13
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.11
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	97.1
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.08
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.08
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.01
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	96.99
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	96.99
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	96.99
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	96.98
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	96.93
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	96.91
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	96.89
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	96.89
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	96.89
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.87
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.84
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	96.8
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.75
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	96.72
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.69
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.67
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.66
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.66
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	96.66
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	96.66
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	96.63
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	96.63
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.6
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	96.57
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	96.55
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.53
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	96.46
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	96.45
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.44
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.43
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	96.42
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.37
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.21
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.17
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	96.15
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.13
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	96.11
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.1
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	96.1
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.09
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	96.05
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.05
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	95.97
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	95.9
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	95.89
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	95.86
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	95.81
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	95.78
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	95.78
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	95.75
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	95.74
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	95.72
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.68
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	95.68
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	95.65
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.64
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	95.64
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	95.62
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	95.57
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	95.56
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.55
d1vmaa2	213	GTPase domain of the signal recognition particle r	95.51
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	95.51
d1j8yf2	211	GTPase domain of the signal sequence recognition p	95.48
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	95.43
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	95.38
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	95.34
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	95.33
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	95.33
d1okkd2	207	GTPase domain of the signal recognition particle r	95.29
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.26
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.18
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	95.17
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	95.17
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	95.17
d2qy9a2	211	GTPase domain of the signal recognition particle r	95.17
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	95.16
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	95.13
d1ls1a2	207	GTPase domain of the signal sequence recognition p	95.12
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.1
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.03
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	95.02
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	95.02
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	94.98
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.98
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.91
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	94.83
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	94.73
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	94.71
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	94.67
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.63
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	94.57
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	94.3
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	94.27
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	94.22
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	94.16
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	94.07
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	93.97
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	93.93
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	93.81
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.79
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	93.76
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	93.7
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	93.55
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	93.49
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	93.4
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.39
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	93.34
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	93.01
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	92.99
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	92.71
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	92.65
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	92.57
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	92.56
d1xpua3	289	Transcription termination factor Rho, ATPase domai	92.43
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	92.42
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	92.21
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.09
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	91.88
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	91.84
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	91.74
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	91.57
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	91.5
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	91.45
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	91.34
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	91.29
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	91.17
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	91.03
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	90.97
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	90.79
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	90.49
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	90.3
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	90.2
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	89.98
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	89.83
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	89.53
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	88.99
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	88.36
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	87.55
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	87.4
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	87.33
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	86.74
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	85.63
d1mo6a1	269	RecA protein, ATPase-domain {Mycobacterium tubercu	84.35
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	84.03
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	83.72
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	83.52
d1tuea_	205	Replication protein E1 helicase domain {Human papi	83.27
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	83.12
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	82.01
d1ewqa2	224	DNA repair protein MutS, the C-terminal domain {Th	81.47
d1khba1	363	Cytosolic phosphoenolpyruvate carboxykinase (GTP-h	80.94

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=7.1e-13  Score=79.38  Aligned_cols=47  Identities=36%  Similarity=0.574  Sum_probs=41.3

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR   73 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~   73 (76)
                      .|.|||+++|+.+||||||+.||+.+.|.+.|.+|++.++..+....
T Consensus         1 ~y~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~   47 (167)
T d1z08a1           1 AYSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNI   47 (167)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEES
T ss_pred             CceEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeecc
Confidence            37899999999999999999999999999999999988776655443

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=2.4e-12  Score=77.30  Aligned_cols=40  Identities=33%  Similarity=0.489  Sum_probs=37.4

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      .+||+++|+++||||||++||+.+.|.+.|.||++.+|..
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~   41 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH   41 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccc
Confidence            5899999999999999999999999999999999988754

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.6e-12  Score=77.09  Aligned_cols=45  Identities=38%  Similarity=0.485  Sum_probs=40.2

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCC
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPG   70 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~   70 (76)
                      +++.|||+++|+++||||||+++|+.+.|...+.++++.++..+.
T Consensus         2 ~~~~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~   46 (171)
T d2ew1a1           2 YDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKT   46 (171)
T ss_dssp             CSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEE
Confidence            678999999999999999999999999999999998887765543

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=2.2e-12  Score=77.13  Aligned_cols=43  Identities=28%  Similarity=0.386  Sum_probs=37.7

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      +++.|||+|+|+++||||||++||+.+.|.+.+.++++.++..
T Consensus         1 ~~y~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~   43 (166)
T d1z0fa1           1 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGT   43 (166)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEE
T ss_pred             CcEEEEEEEECCCCcCHHHHHHHHHhCCCCCccccccccccee
Confidence            5789999999999999999999999999999988877655443

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=4.1e-12  Score=76.22  Aligned_cols=44  Identities=30%  Similarity=0.442  Sum_probs=39.7

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ++++.|||+++|+.+||||||+.||+.+.|...+.++++.++..
T Consensus         1 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~   44 (169)
T d3raba_           1 NFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKV   44 (169)
T ss_dssp             CCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEE
T ss_pred             CCCeEEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceee
Confidence            46889999999999999999999999999999999998877554

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=6.2e-12  Score=75.17  Aligned_cols=41  Identities=44%  Similarity=0.652  Sum_probs=37.5

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ..|||+++|+.+||||||++||+.+.|.+.|.+|++..+..
T Consensus         2 r~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~   42 (167)
T d1c1ya_           2 REYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK   42 (167)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEE
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccccce
Confidence            36899999999999999999999999999999999877653

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=7e-12  Score=74.97  Aligned_cols=38  Identities=45%  Similarity=0.734  Sum_probs=35.6

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      .|||+++|+++||||||+.||+.+.|.+.|.+|++..+
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~   39 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTY   39 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEE
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeecc
Confidence            68999999999999999999999999999999998764

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.21  E-value=7e-12  Score=75.28  Aligned_cols=40  Identities=33%  Similarity=0.478  Sum_probs=37.3

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ..+||+++|+.+||||||++||+.+.|.+.|.+|++.++.
T Consensus         3 ~~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~   42 (168)
T d1u8za_           3 ALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYR   42 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccc
Confidence            4789999999999999999999999999999999988865

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.6e-12  Score=78.26  Aligned_cols=44  Identities=32%  Similarity=0.470  Sum_probs=34.5

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCc
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGR   71 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~   71 (76)
                      .+|||+++|+.+||||||+.||+.+.|...|.+|++.++..+..
T Consensus         2 ~~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~   45 (170)
T d1i2ma_           2 VQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVF   45 (170)
T ss_dssp             EEEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEE
T ss_pred             eeEEEEEECCCCcCHHHHHHHHHhCCCCcccccceecccccccc
Confidence            37999999999999999999999999999999999988765443

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.17  E-value=5.6e-12  Score=77.26  Aligned_cols=44  Identities=39%  Similarity=0.492  Sum_probs=39.3

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      .+++.|||+|+|+.+||||||+++|+.+.|...+.+|++..+..
T Consensus         2 ~~~~~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~   45 (194)
T d2bcgy1           2 EYDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKI   45 (194)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEE
T ss_pred             CCCEEEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEE
Confidence            47889999999999999999999999999999999998765443

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=1.1e-11  Score=74.42  Aligned_cols=45  Identities=24%  Similarity=0.411  Sum_probs=40.0

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP   69 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~   69 (76)
                      .+++.|||+++|+.+||||||++||+.+.|...+.+|.+..+...
T Consensus         1 ~~~~~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~   45 (174)
T d2bmea1           1 TYDFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSK   45 (174)
T ss_dssp             CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEE
T ss_pred             CccEEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeE
Confidence            368899999999999999999999999999999999987775543

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.16  E-value=1.1e-11  Score=74.17  Aligned_cols=42  Identities=57%  Similarity=0.749  Sum_probs=38.2

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPG   70 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~   70 (76)
                      .+||+++|+.+||||+|+.||+.+.|.+.|.+|++.++..+.
T Consensus         3 ~iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~   44 (170)
T d1ek0a_           3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQR   44 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccc
Confidence            589999999999999999999999999999999998776543

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.16  E-value=8.4e-12  Score=75.16  Aligned_cols=43  Identities=42%  Similarity=0.546  Sum_probs=34.7

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      +++.|||+++|+.+||||||++||+.+.|...+.++.+.+...
T Consensus         1 ~~~~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~   43 (175)
T d2f9la1           1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFAT   43 (175)
T ss_dssp             CSEEEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeee
Confidence            5789999999999999999999999999999888777555433

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=2.9e-12  Score=77.16  Aligned_cols=47  Identities=32%  Similarity=0.427  Sum_probs=25.5

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCc
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGR   71 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~   71 (76)
                      .+++.|||+++|+.+||||||+.+|+.+.|...+.+|++.++..+..
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~   48 (173)
T d2fu5c1           2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTI   48 (173)
T ss_dssp             CCSEEEEEEEECCCCC----------------CHHHHHCEEEEEEEE
T ss_pred             cccEEEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEE
Confidence            47889999999999999999999999999999999998877655433

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.7e-11  Score=73.13  Aligned_cols=41  Identities=32%  Similarity=0.577  Sum_probs=37.5

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP   69 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~   69 (76)
                      .|||+++|+++||||||+.||+.+.|...|.+|++.++...
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~   43 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQ   43 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccc
Confidence            58999999999999999999999999999999998876543

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.7e-11  Score=73.05  Aligned_cols=39  Identities=41%  Similarity=0.572  Sum_probs=36.3

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ..+||+++|+.+||||||++||+.+.|...|.+|++.+|
T Consensus         3 k~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~   41 (167)
T d1xtqa1           3 KSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF   41 (167)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEE
T ss_pred             cceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeccc
Confidence            468999999999999999999999999999999998875

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.4e-11  Score=73.80  Aligned_cols=45  Identities=78%  Similarity=1.122  Sum_probs=39.9

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP   69 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~   69 (76)
                      ++...|||+++|+.+||||||+.||+.+.|.+.+.+|++.++...
T Consensus         2 ~~~~~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~   46 (170)
T d1r2qa_           2 NKICQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQ   46 (170)
T ss_dssp             CEEEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEE
T ss_pred             CceeEEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccc
Confidence            355789999999999999999999999999999999998876543

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=1.4e-11  Score=74.93  Aligned_cols=40  Identities=28%  Similarity=0.399  Sum_probs=36.4

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEE
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC   65 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~   65 (76)
                      ....|||+++|+++||||||++||+.+.|.+.|.+|++..
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~   45 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDH   45 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCC
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeee
Confidence            4568999999999999999999999999999999998644

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.4e-11  Score=72.45  Aligned_cols=39  Identities=44%  Similarity=0.671  Sum_probs=35.5

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ..|||+++|+.+||||||++||+.+.|.+.+.+|++..+
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~   40 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY   40 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeee
Confidence            369999999999999999999999999999999987553

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=1.8e-11  Score=74.04  Aligned_cols=42  Identities=33%  Similarity=0.500  Sum_probs=38.1

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPG   70 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~   70 (76)
                      .|||+|+|+++||||||+.+|+.+.|...|.+|++.++..+.
T Consensus         2 ~~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~   43 (184)
T d1vg8a_           2 LLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE   43 (184)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeee
Confidence            689999999999999999999999999999999988765543

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=9e-12  Score=75.46  Aligned_cols=45  Identities=27%  Similarity=0.330  Sum_probs=40.4

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCC
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPG   70 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~   70 (76)
                      +++.+||+++|+.+||||||++||+.+.|...+.++.+.++..+.
T Consensus         2 ~d~~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~   46 (186)
T d2f7sa1           2 YDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKR   46 (186)
T ss_dssp             CSEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEE
T ss_pred             CCEEEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEE
Confidence            678999999999999999999999999999999999888765443

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.13  E-value=1.1e-11  Score=73.86  Aligned_cols=45  Identities=38%  Similarity=0.515  Sum_probs=33.1

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDR   73 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~   73 (76)
                      .+||+++|+++||||||+++|+.+.|...|.+|++.++......+
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~   46 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDI   46 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEES
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEE
Confidence            689999999999999999999999999999999988777554443

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.2e-11  Score=73.72  Aligned_cols=40  Identities=25%  Similarity=0.333  Sum_probs=36.0

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ..+||+|+|+++||||||++||+.+.|.+.|.+|++..+.
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~   43 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYS   43 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEE
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeecee
Confidence            4689999999999999999999999999999999875543

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.9e-11  Score=72.64  Aligned_cols=40  Identities=43%  Similarity=0.590  Sum_probs=36.2

Q ss_pred             eeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP   69 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~   69 (76)
                      |||+++|+.+||||||++||+.+.|...|.++++.++...
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~   40 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSK   40 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEE
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccce
Confidence            7999999999999999999999999999999987775543

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.8e-11  Score=73.48  Aligned_cols=43  Identities=40%  Similarity=0.487  Sum_probs=34.5

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      ++..|||+|+|+++||||||++||+.+.|...|.+|++..+..
T Consensus         3 ~~~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~   45 (174)
T d1wmsa_           3 KSSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLN   45 (174)
T ss_dssp             CEEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEE
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeee
Confidence            4568999999999999999999999999999999998776543

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=3.2e-11  Score=73.11  Aligned_cols=39  Identities=28%  Similarity=0.397  Sum_probs=35.7

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      .+||+++|+.+||||+|+.||+.+.|++.|.+|++..+.
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~   40 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYT   40 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeccc
Confidence            689999999999999999999999999999999876544

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.4e-11  Score=73.42  Aligned_cols=39  Identities=26%  Similarity=0.383  Sum_probs=35.8

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      .+||+++|+++||||||+.||+.+.|...|.+|++..+.
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~   41 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYA   41 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEE
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecc
Confidence            589999999999999999999999999999999986643

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=3.4e-11  Score=72.11  Aligned_cols=39  Identities=33%  Similarity=0.575  Sum_probs=34.9

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ..|||+++|+++||||||++||+.+.|...|.+|.+..+
T Consensus         4 ~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~   42 (171)
T d2erya1           4 EKYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSY   42 (171)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEE
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccce
Confidence            358999999999999999999999999999999876543

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=2.6e-11  Score=72.35  Aligned_cols=42  Identities=38%  Similarity=0.568  Sum_probs=37.8

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP   69 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~   69 (76)
                      ..+||+++|+.+||||||++||+.+.|.+.|.+|++..+...
T Consensus         3 k~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~   44 (167)
T d1z0ja1           3 RELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTK   44 (167)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccc
Confidence            478999999999999999999999999999999988776543

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.11  E-value=1.6e-11  Score=73.17  Aligned_cols=40  Identities=38%  Similarity=0.523  Sum_probs=35.8

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEe
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNV   68 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~   68 (76)
                      .+||+++|+++||||||++||+.+.|...|.+|++.++..
T Consensus         2 ~iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~   41 (164)
T d1z2aa1           2 AIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLE   41 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEE
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccce
Confidence            5899999999999999999999999999999998765443

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=4.3e-11  Score=71.79  Aligned_cols=40  Identities=35%  Similarity=0.513  Sum_probs=36.5

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      ..|||+++|+++||||||+.||+.+.|.+.|.+|++..+.
T Consensus         3 pt~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~   42 (169)
T d1x1ra1           3 PTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYL   42 (169)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEE
T ss_pred             CcEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccc
Confidence            3699999999999999999999999999999999987653

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.10  E-value=1.6e-11  Score=74.03  Aligned_cols=37  Identities=27%  Similarity=0.266  Sum_probs=33.2

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      .+||+++|+.+||||||++||..+.|.  |.||+|.++.
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~~--~~pTiG~~~~   38 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHGS--GVPTTGIIEY   38 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTSS--CCCCCSCEEE
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCCC--CCceeeEEEE
Confidence            689999999999999999999999884  7899988753

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.5e-11  Score=71.87  Aligned_cols=38  Identities=32%  Similarity=0.397  Sum_probs=35.3

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      +.||+|+|+++||||||+.||+.+.|.+.|.+|++..+
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~   39 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENY   39 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEE
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeec
Confidence            57999999999999999999999999999999997664

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=4.1e-11  Score=71.66  Aligned_cols=42  Identities=36%  Similarity=0.473  Sum_probs=34.9

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCc-CCCceeEEEE
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEY-QESTIGGCGN   67 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~-~~~tig~~~~   67 (76)
                      +++.|||+++|+.+||||+|++||+.+.|... +.++++.++.
T Consensus         3 ~d~~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~   45 (170)
T d2g6ba1           3 YDVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFR   45 (170)
T ss_dssp             CSEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEE
T ss_pred             CceEEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeE
Confidence            68899999999999999999999999998654 4555655543

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=2.4e-11  Score=73.01  Aligned_cols=41  Identities=32%  Similarity=0.559  Sum_probs=31.1

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      .|.|||+|+|+++||||||+.||+.+.|...|.++.+.+..
T Consensus         1 ~y~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~   41 (173)
T d2a5ja1           1 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFG   41 (173)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEE
T ss_pred             CeeEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccc
Confidence            36799999999999999999999999999888877644433

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=3.9e-11  Score=71.15  Aligned_cols=41  Identities=37%  Similarity=0.622  Sum_probs=36.7

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP   69 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~   69 (76)
                      .|||+++|+.+||||||+.||+.+.|...+.++++..+..+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~   42 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRER   42 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEE
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccccccee
Confidence            68999999999999999999999999999999887666543

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=8.9e-11  Score=70.51  Aligned_cols=38  Identities=34%  Similarity=0.515  Sum_probs=34.3

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG   64 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~   64 (76)
                      ...+||+++|+.+||||||++||+.+.|.+.|.+|...
T Consensus         4 ~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~   41 (173)
T d2fn4a1           4 SETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIED   41 (173)
T ss_dssp             SCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCE
T ss_pred             CCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccccc
Confidence            45799999999999999999999999999999988643

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.00  E-value=1.8e-10  Score=68.47  Aligned_cols=39  Identities=31%  Similarity=0.381  Sum_probs=36.2

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGN   67 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~   67 (76)
                      .+||+++|+++||||||+++|..+.|.+.+.+|++.++.
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~   40 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR   40 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee
Confidence            689999999999999999999999999999999987765

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.95  E-value=9.5e-11  Score=70.88  Aligned_cols=34  Identities=29%  Similarity=0.404  Sum_probs=30.6

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC   65 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~   65 (76)
                      .+||++||+++||||||++||   .|.+.+.||+|++
T Consensus         2 ~iKivllG~~~vGKTsll~r~---~f~~~~~pTiG~~   35 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQM---RIIHGQDPTKGIH   35 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHH---HHHHSCCCCSSEE
T ss_pred             eEEEEEECCCCCCHHHHHHHH---hcCCCCCCeeeeE
Confidence            689999999999999999999   3677889999976

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.94  E-value=1.7e-10  Score=68.88  Aligned_cols=38  Identities=37%  Similarity=0.627  Sum_probs=31.4

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      .|||+++|+.+||||||+++|+.+.|...|.+|.+..+
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~   39 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADF   39 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSC
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccce
Confidence            58999999999999999999999999998888775543

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.91  E-value=4.8e-10  Score=67.36  Aligned_cols=43  Identities=42%  Similarity=0.591  Sum_probs=36.7

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeC
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVP   69 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~   69 (76)
                      ...+||+++|+.+||||||++||..+.|...+.++++..+...
T Consensus         5 ~~~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~   47 (177)
T d1x3sa1           5 LTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVK   47 (177)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEE
T ss_pred             cceeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeE
Confidence            4569999999999999999999999999998888776655443

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.90  E-value=3.4e-10  Score=67.78  Aligned_cols=37  Identities=24%  Similarity=0.155  Sum_probs=32.3

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC   65 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~   65 (76)
                      .+||++||+.+||||||++||..+.|++.+..++.++
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~t~~~~~~~~~   38 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFT   38 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSCCCSEEEEEEE
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCCCccEEEEEEE
Confidence            6899999999999999999999999988776665544

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=98.84  E-value=9.1e-10  Score=63.91  Aligned_cols=41  Identities=15%  Similarity=0.244  Sum_probs=32.5

Q ss_pred             eeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPG   70 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~   70 (76)
                      +||+++|+++||||||++|++.+.|...+..+.......+.
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~   41 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEY   41 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEEEEee
Confidence            58999999999999999999999988776655544444443

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.4e-09  Score=65.16  Aligned_cols=37  Identities=32%  Similarity=0.442  Sum_probs=27.8

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCC-cCCCceeE
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHE-YQESTIGG   64 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~-~~~~tig~   64 (76)
                      ..|||+++|+.+||||||++||+.+.+.. .+.+|++.
T Consensus         2 ~~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~   39 (172)
T d2g3ya1           2 TYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGE   39 (172)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCT
T ss_pred             CEEEEEEECCCCcCHHHHHHHHHhCcCCccccccceee
Confidence            46999999999999999999999877653 33445544

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=6.6e-09  Score=62.71  Aligned_cols=38  Identities=34%  Similarity=0.489  Sum_probs=31.9

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ..+||+++|+.+||||||+.+|+.+.|.. +.+|.+..+
T Consensus         4 p~~ki~vlG~~~vGKTsLi~~~~~~~f~~-~~~t~~~~~   41 (175)
T d2bmja1           4 PELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQY   41 (175)
T ss_dssp             CEEEEEEECCTTTTHHHHHHHHHHSCCCC-CCCSSCEEE
T ss_pred             CcEEEEEECCCCCCHHHHHHHHHhCCCCC-cCCccceeE
Confidence            47999999999999999999999999875 456655554

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=98.70  E-value=7.6e-09  Score=60.93  Aligned_cols=37  Identities=22%  Similarity=0.368  Sum_probs=31.1

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      .+||+++|+.+||||||+++|..+.+. .+.+|++..+
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~~~~-~~~~t~~~~~   38 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGEDVD-TISPTLGFNI   38 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTCCCS-SCCCCSSEEE
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCCCCC-cccceEeeee
Confidence            689999999999999999999887664 5678886554

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.68  E-value=2.8e-09  Score=66.42  Aligned_cols=36  Identities=28%  Similarity=0.256  Sum_probs=30.6

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEE
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC   65 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~   65 (76)
                      +...+||++||+++||||||++||..+.+    .||+|++
T Consensus         3 ~k~~~KilllG~~~vGKTsll~~~~~~~~----~pTiG~~   38 (221)
T d1azta2           3 YRATHRLLLLGAGESGKSTIVKQMRILHV----VLTSGIF   38 (221)
T ss_dssp             HHHSEEEEEECSTTSSHHHHHHHHHHHHC----CCCCSCE
T ss_pred             chhcCEEEEECCCCCCHHHHHHHHhcCCc----CCCCCeE
Confidence            56789999999999999999999987654    5788776

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=98.67  E-value=1.2e-08  Score=59.24  Aligned_cols=35  Identities=26%  Similarity=0.524  Sum_probs=29.4

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCcee
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIG   63 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig   63 (76)
                      ..+||+++|+++||||||+++|+.+.|...+ +|.+
T Consensus         4 ke~kI~ivG~~~vGKSSLi~~~~~~~~~~~~-~~~~   38 (169)
T d1upta_           4 REMRILILGLDGAGKTTILYRLQVGEVVTTI-PTIG   38 (169)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSCCCCC-CCSS
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCCCccee-cccc
Confidence            3689999999999999999999999988644 4443

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=9e-09  Score=61.21  Aligned_cols=37  Identities=32%  Similarity=0.377  Sum_probs=24.4

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      .|||+++|+++||||||+++|....+.. +.++.+..+
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~~~~-~~~~~~~~~   37 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVEDGP-EAEAAGHTY   37 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------CEEE
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCccCC-cCCeeeeee
Confidence            4899999999999999999999877654 445555444

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.62  E-value=1.2e-08  Score=58.68  Aligned_cols=35  Identities=23%  Similarity=0.340  Sum_probs=29.4

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ||+++|+++||||||+++++.+.|.. +.+|++...
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~~~~-~~~t~~~~~   36 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDRLAT-LQPTWHPTS   36 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCC-CCCCCSCEE
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCCe-eeceeeEeE
Confidence            89999999999999999999988764 567765554

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=98.55  E-value=1.1e-08  Score=60.74  Aligned_cols=38  Identities=21%  Similarity=0.318  Sum_probs=30.5

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeE
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG   64 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~   64 (76)
                      .+..+||+++|+++||||||+++|+.+.|...+ ++++.
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~~~~~-~~~~~   50 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLASEDISHIT-PTQGF   50 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCCEEEE-EETTE
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhcCCCCcce-eeeee
Confidence            345799999999999999999999998886543 44443

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.42  E-value=4e-08  Score=57.70  Aligned_cols=32  Identities=25%  Similarity=0.283  Sum_probs=23.8

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcC
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQ   58 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~   58 (76)
                      ....||+++|+++||||||+++++.+.+...+
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~~~~~~   42 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDRLGQHV   42 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC------
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCccee
Confidence            34689999999999999999999988876543

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=98.41  E-value=2.2e-08  Score=59.92  Aligned_cols=38  Identities=24%  Similarity=0.434  Sum_probs=30.3

Q ss_pred             ccceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeE
Q psy1355          26 KICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGG   64 (76)
Q Consensus        26 ~~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~   64 (76)
                      ....+||+++|+++||||||++|+..+.+... .+|.+.
T Consensus        14 ~~k~~KI~lvG~~~vGKTsLi~~l~~~~~~~~-~~t~~~   51 (182)
T d1moza_          14 SNKELRILILGLDGAGKTTILYRLQIGEVVTT-KPTIGF   51 (182)
T ss_dssp             CSSCEEEEEEEETTSSHHHHHHHTCCSEEEEE-CSSTTC
T ss_pred             CCceEEEEEECCCCCCHHHHHHHHhcCCCCcc-ccccce
Confidence            34579999999999999999999998877643 355543

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=98.38  E-value=3.4e-08  Score=58.69  Aligned_cols=39  Identities=23%  Similarity=0.325  Sum_probs=30.6

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ...+||+++|+++||||||++||+.+.+...+ +|.+..+
T Consensus        10 ~k~~kIvlvG~~~vGKTSli~rl~~~~~~~~~-~t~~~~~   48 (173)
T d1e0sa_          10 NKEMRILMLGLDAAGKTTILYKLKLGQSVTTI-PTVGFNV   48 (173)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHTTCCCCEEEE-EETTEEE
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCCCCcc-ceeeeeE
Confidence            34799999999999999999999988876543 4444443

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=98.32  E-value=1.3e-07  Score=55.58  Aligned_cols=29  Identities=17%  Similarity=0.434  Sum_probs=26.1

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHE   56 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~   56 (76)
                      ..+||+++|+.+||||||++|+..+.+..
T Consensus        14 k~~kI~vvG~~~~GKSsLi~rl~~~~~~~   42 (177)
T d1zj6a1          14 QEHKVIIVGLDNAGKTTILYQFSMNEVVH   42 (177)
T ss_dssp             SCEEEEEEESTTSSHHHHHHHHHTTSCEE
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCCCCc
Confidence            46999999999999999999999887764

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=2.9e-07  Score=55.86  Aligned_cols=34  Identities=26%  Similarity=0.565  Sum_probs=28.5

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEE
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGC   65 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~   65 (76)
                      +|+++|+.+||||||+++|+.+.+...+ +|++.+
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~~~~~-~t~~~~   35 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQ-TSITDS   35 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCCCCBC-CCCSCE
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCCCccc-CCeeEE
Confidence            6899999999999999999999887754 555544

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=98.19  E-value=1.1e-06  Score=50.86  Aligned_cols=25  Identities=32%  Similarity=0.440  Sum_probs=22.1

Q ss_pred             eeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      |||+++|+++||||||+++++...+
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~~~   26 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGREA   26 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCc
Confidence            7999999999999999999986543

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=98.03  E-value=3.7e-06  Score=53.30  Aligned_cols=39  Identities=23%  Similarity=0.326  Sum_probs=30.5

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      ++.++|++|+|||||++ .+.+.+    .|+ .+.+.++|+++..
T Consensus        31 ~vaIvG~sGsGKSTLl~-ll~gl~----~p~-~G~I~i~g~~i~~   69 (241)
T d2pmka1          31 VIGIVGRSGSGKSTLTK-LIQRFY----IPE-NGQVLIDGHDLAL   69 (241)
T ss_dssp             EEEEECSTTSSHHHHHH-HHTTSS----CCS-EEEEEETTEETTT
T ss_pred             EEEEECCCCCCHHHHHH-HHHhcC----CCC-CCEEEECCEEecc
Confidence            47899999999999994 555553    344 6789999998864

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.01  E-value=1.5e-06  Score=52.15  Aligned_cols=29  Identities=21%  Similarity=0.344  Sum_probs=25.1

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCcCCC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQFHE   56 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~f~~   56 (76)
                      |...|+++|+++||||||+++++.+.+..
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~   30 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP   30 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCC
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC
Confidence            45689999999999999999999877653

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.98  E-value=4.8e-06  Score=52.56  Aligned_cols=38  Identities=18%  Similarity=0.247  Sum_probs=29.5

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      +.++|++|||||||++ .+.+..    .|+ .+++.++|+++..
T Consensus        34 ~~iiG~sGsGKSTLl~-~i~gl~----~p~-sG~I~~~g~~i~~   71 (230)
T d1l2ta_          34 VSIMGPSGSGKSTMLN-IIGCLD----KPT-EGEVYIDNIKTND   71 (230)
T ss_dssp             EEEECSTTSSHHHHHH-HHTTSS----CCS-EEEEEETTEECTT
T ss_pred             EEEECCCCCCcchhhH-hccCCC----CCC-cceeEECCEEcCc
Confidence            6799999999999995 665553    344 5678999998864

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=97.97  E-value=1.2e-06  Score=51.26  Aligned_cols=30  Identities=20%  Similarity=0.212  Sum_probs=24.4

Q ss_pred             cccceeeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          25 AKICQYKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        25 ~~~~~~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      ..+..++|+++|.++||||||+++++...+
T Consensus        12 p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~   41 (188)
T d1puia_          12 PSDTGIEVAFAGRSNAGKSSALNTLTNQKS   41 (188)
T ss_dssp             SCSCSEEEEEEECTTSSHHHHHTTTCCC--
T ss_pred             CCccCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence            355689999999999999999988876543

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=3.5e-06  Score=53.62  Aligned_cols=39  Identities=23%  Similarity=0.404  Sum_probs=30.2

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      ++.++|++|+|||||++ .+.+.+    .|+ .+.+.++|+++..
T Consensus        42 ~vaivG~sGsGKSTLl~-li~gl~----~p~-~G~I~i~g~~i~~   80 (251)
T d1jj7a_          42 VTALVGPNGSGKSTVAA-LLQNLY----QPT-GGQLLLDGKPLPQ   80 (251)
T ss_dssp             EEEEECSTTSSHHHHHH-HHTTSS----CCS-EEEEEETTEEGGG
T ss_pred             EEEEECCCCCcHHHHHH-HHhccc----CCC-cCEEEECCEecch
Confidence            47899999999999994 555553    344 5788899998753

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.94  E-value=6.3e-06  Score=52.08  Aligned_cols=38  Identities=26%  Similarity=0.345  Sum_probs=29.5

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      +.++|++|||||||++ .+.+..    .|+ .+++.++|+++..
T Consensus        29 ~~liGpsGsGKSTLl~-~i~Gl~----~p~-sG~I~i~g~~i~~   66 (232)
T d2awna2          29 VVFVGPSGCGKSTLLR-MIAGLE----TIT-SGDLFIGEKRMND   66 (232)
T ss_dssp             EEEECCTTSSHHHHHH-HHHTSS----CCS-EEEEEESSSCCTT
T ss_pred             EEEECCCCChHHHHHH-HHhcCC----CCC-CCEEEECCEECCC
Confidence            6799999999999994 665653    233 6888899998764

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.93  E-value=6.3e-06  Score=52.37  Aligned_cols=38  Identities=29%  Similarity=0.419  Sum_probs=29.4

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      ++++|++|||||||++ .+.+...    |+ .+.+.++|+++..
T Consensus        27 ~~liGpnGaGKSTll~-~i~Gl~~----p~-~G~I~~~G~~i~~   64 (240)
T d2onka1          27 CVLLGPTGAGKSVFLE-LIAGIVK----PD-RGEVRLNGADITP   64 (240)
T ss_dssp             EEEECCTTSSHHHHHH-HHHTSSC----CS-EEEEEETTEECTT
T ss_pred             EEEECCCCChHHHHHH-HHHcCCC----CC-ceEEEECCEECCc
Confidence            5689999999999994 5555532    33 7888999998864

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.91  E-value=6.5e-06  Score=52.41  Aligned_cols=39  Identities=23%  Similarity=0.398  Sum_probs=30.1

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      ++.++|++|+|||||++ .+.+.+    .|+ .+++.++|+++..
T Consensus        43 ~iaivG~sGsGKSTLl~-ll~gl~----~p~-~G~I~i~g~~i~~   81 (253)
T d3b60a1          43 TVALVGRSGSGKSTIAS-LITRFY----DID-EGHILMDGHDLRE   81 (253)
T ss_dssp             EEEEEECTTSSHHHHHH-HHTTTT----CCS-EEEEEETTEETTT
T ss_pred             EEEEECCCCChHHHHHH-HHhccc----CCC-ccEEEECCcccch
Confidence            47899999999999994 554543    344 5788999998764

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.89  E-value=8.4e-06  Score=51.71  Aligned_cols=38  Identities=37%  Similarity=0.411  Sum_probs=29.5

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      +.++|++|||||||++ .+.+..    .|+ .+++.++|+++..
T Consensus        35 ~~liGpsGaGKSTLl~-~i~Gl~----~p~-sG~I~i~g~~i~~   72 (239)
T d1v43a3          35 LVLLGPSGCGKTTTLR-MIAGLE----EPT-EGRIYFGDRDVTY   72 (239)
T ss_dssp             EEEECCTTSSHHHHHH-HHHTSS----CCS-EEEEEETTEECTT
T ss_pred             EEEECCCCChHHHHHH-HHHcCC----CCC-CCEEEEcceeccc
Confidence            6799999999999994 665653    344 5678899998864

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.87  E-value=3e-06  Score=49.56  Aligned_cols=22  Identities=41%  Similarity=0.765  Sum_probs=19.1

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      +||+++|++|+|||||++.++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~   22 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVE   22 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHh
Confidence            5899999999999999976553

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.87  E-value=6.3e-06  Score=52.17  Aligned_cols=39  Identities=21%  Similarity=0.348  Sum_probs=29.2

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      ++.++|++|+|||||++ .+.+.+    .|+ .+++.++|+++..
T Consensus        30 ~vaivG~sGsGKSTLl~-ll~gl~----~p~-~G~I~i~g~~i~~   68 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFS-LLERFY----QPT-AGEITIDGQPIDN   68 (242)
T ss_dssp             EEEEECCTTSSHHHHHH-HHTTSS----CCS-BSCEEETTEESTT
T ss_pred             EEEEECCCCCCHHHHHH-HHHHhh----CCC-CCEEEECCEEecc
Confidence            57899999999999995 555553    344 5677888887754

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.86  E-value=7.4e-06  Score=48.36  Aligned_cols=25  Identities=28%  Similarity=0.494  Sum_probs=22.3

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCc
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      .+||+++|..++|||||+++++...
T Consensus         8 ~~kV~iiG~~~~GKSTLin~l~~~~   32 (186)
T d1mkya2           8 AIKVAIVGRPNVGKSTLFNAILNKE   32 (186)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHTST
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC
Confidence            6899999999999999999888643

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.86  E-value=6.6e-06  Score=52.51  Aligned_cols=39  Identities=23%  Similarity=0.331  Sum_probs=29.8

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      ++.++|++|+|||||++ .+.+.    |.++ .+.+.++|.++..
T Consensus        46 ~vaivG~sGsGKSTLl~-ll~gl----~~p~-~G~I~i~g~~i~~   84 (255)
T d2hyda1          46 TVAFVGMSGGGKSTLIN-LIPRF----YDVT-SGQILIDGHNIKD   84 (255)
T ss_dssp             EEEEECSTTSSHHHHHT-TTTTS----SCCS-EEEEEETTEEGGG
T ss_pred             EEEEECCCCCcHHHHHH-HHHhc----CCcc-ccccccCCEEccc
Confidence            47899999999999994 55454    3344 5788899988754

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=97.84  E-value=8.5e-06  Score=51.70  Aligned_cols=38  Identities=32%  Similarity=0.372  Sum_probs=29.5

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      +.++|++|||||||+ +.+.+...    |+ .+++.++|+++..
T Consensus        34 ~~iiG~sGsGKSTLl-~~i~Gl~~----p~-sG~I~~~g~~i~~   71 (240)
T d3dhwc1          34 YGVIGASGAGKSTLI-RCVNLLER----PT-EGSVLVDGQELTT   71 (240)
T ss_dssp             EEEEESTTSSHHHHH-HHHTTSSC----CS-EEEEEETTEEECT
T ss_pred             EEEECCCCCCHHHHH-HHHcCCcc----cc-CCceEEcCeEeee
Confidence            679999999999999 56656532    44 6788999998754

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=97.82  E-value=8.7e-06  Score=51.36  Aligned_cols=38  Identities=24%  Similarity=0.449  Sum_probs=29.7

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      +.++|++|||||||+ +.+.+...    |+ .+++.++|+++..
T Consensus        29 ~~liGpsGaGKSTll-~~l~Gl~~----p~-sG~I~~~G~~i~~   66 (229)
T d3d31a2          29 FVILGPTGAGKTLFL-ELIAGFHV----PD-SGRILLDGKDVTD   66 (229)
T ss_dssp             EEEECCCTHHHHHHH-HHHHTSSC----CS-EEEEEETTEECTT
T ss_pred             EEEECCCCCcHHHHH-HHHhcCcC----CC-CCEEEEccEeccc
Confidence            679999999999999 46656533    33 6888999998864

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.79  E-value=1.7e-06  Score=50.00  Aligned_cols=24  Identities=33%  Similarity=0.695  Sum_probs=21.3

Q ss_pred             eeEEEECCCCCcchhhhhhhhhCc
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      +||+++|.+++|||||+++++...
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~~   24 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNED   24 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC
Confidence            589999999999999999987543

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.73  E-value=1e-05  Score=47.71  Aligned_cols=26  Identities=23%  Similarity=0.358  Sum_probs=22.6

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhCc
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      +.-+|+|+|.+++|||||+++++...
T Consensus         4 ~~~~I~lvG~~~~GKSSLin~l~~~~   29 (178)
T d1wf3a1           4 YSGFVAIVGKPNVGKSTLLNNLLGVK   29 (178)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCCC
Confidence            45579999999999999999998654

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=97.67  E-value=2.1e-05  Score=49.82  Aligned_cols=37  Identities=22%  Similarity=0.332  Sum_probs=27.9

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      +.++|++|+|||||++ .+.+...    |+ .+++.++|+++.
T Consensus        32 ~~liG~sGaGKSTll~-~i~gl~~----p~-sG~I~~~g~~i~   68 (240)
T d1g2912          32 MILLGPSGCGKTTTLR-MIAGLEE----PS-RGQIYIGDKLVA   68 (240)
T ss_dssp             EEEECSTTSSHHHHHH-HHHTSSC----CS-EEEEEETTEEEE
T ss_pred             EEEECCCCChHHHHHH-HHhcCCC----CC-CCEEEECCEEec
Confidence            6799999999999994 5655533    33 577888888763

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=97.66  E-value=3.3e-05  Score=48.72  Aligned_cols=38  Identities=21%  Similarity=0.355  Sum_probs=29.3

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      +.++|++|+|||||++ .+.+...    |+ .+++.++|+++..
T Consensus        35 ~~liGpnGaGKSTl~~-~i~Gl~~----p~-~G~I~~~G~~i~~   72 (240)
T d1ji0a_          35 VTLIGANGAGKTTTLS-AIAGLVR----AQ-KGKIIFNGQDITN   72 (240)
T ss_dssp             EEEECSTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEECTT
T ss_pred             EEEECCCCCcHHHHHH-HHhCCCC----CC-ccEEEeccccccc
Confidence            5799999999999995 5555533    33 6788999998764

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=97.61  E-value=1.3e-05  Score=46.86  Aligned_cols=23  Identities=30%  Similarity=0.647  Sum_probs=19.4

Q ss_pred             eEEEECCCCCcchhhhhhhhhCc
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      +|+++|+.++|||||+++++...
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~~   24 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKKK   24 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC
Confidence            58999999999999999988544

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.61  E-value=1.3e-05  Score=46.77  Aligned_cols=23  Identities=26%  Similarity=0.457  Sum_probs=20.2

Q ss_pred             eeEEEECCCCCcchhhhhhhhhC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      =.|+++|.++||||||+++++..
T Consensus         6 ~~I~iiG~~nvGKSSLin~L~~~   28 (179)
T d1egaa1           6 GFIAIVGRPNVGKSTLLNKLLGQ   28 (179)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC
Confidence            35889999999999999999854

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.60  E-value=2.6e-05  Score=47.80  Aligned_cols=37  Identities=16%  Similarity=0.197  Sum_probs=27.3

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      +.++|++|+|||||++ .+.+..    .|+ .+++.++|+++.
T Consensus        30 ~~l~G~NGsGKSTLl~-~i~gl~----~p~-~G~I~~~g~~i~   66 (200)
T d1sgwa_          30 VNFHGPNGIGKTTLLK-TISTYL----KPL-KGEIIYNGVPIT   66 (200)
T ss_dssp             EEEECCTTSSHHHHHH-HHTTSS----CCS-EEEEEETTEEGG
T ss_pred             EEEECCCCChHHHHHH-HHhccc----ccC-CCEEEECCEehh
Confidence            6799999999999995 444442    333 568888888764

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.57  E-value=5.4e-05  Score=47.97  Aligned_cols=38  Identities=21%  Similarity=0.398  Sum_probs=29.5

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      +.++|++|+|||||++ .+.+...    |+ .+++.++|+++..
T Consensus        33 ~~liG~nGaGKSTLl~-~i~Gl~~----p~-~G~I~~~g~~i~~   70 (254)
T d1g6ha_          33 TLIIGPNGSGKSTLIN-VITGFLK----AD-EGRVYFENKDITN   70 (254)
T ss_dssp             EEEECSTTSSHHHHHH-HHTTSSC----CS-EEEEEETTEECTT
T ss_pred             EEEECCCCCcHHHHHH-HHHCCCc----CC-CcEEEECCEeccc
Confidence            6799999999999995 5555533    33 6888999998864

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=97.55  E-value=2.1e-05  Score=49.95  Aligned_cols=37  Identities=24%  Similarity=0.309  Sum_probs=28.0

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      +.++|++|||||||+ +.+.+...    |+ .+++.++|+++.
T Consensus        34 ~~iiG~sGsGKSTll-~~i~gl~~----p~-~G~I~~~g~~i~   70 (242)
T d1oxxk2          34 FGILGPSGAGKTTFM-RIIAGLDV----PS-TGELYFDDRLVA   70 (242)
T ss_dssp             EEEECSCHHHHHHHH-HHHHTSSC----CS-EEEEEETTEEEE
T ss_pred             EEEECCCCCcHHHHH-HHHHcCcC----CC-CceEEECCEEee
Confidence            679999999999999 56656532    44 467888888763

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.53  E-value=6.4e-05  Score=47.84  Aligned_cols=37  Identities=22%  Similarity=0.327  Sum_probs=28.7

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQ   74 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~   74 (76)
                      +.++|++|+|||||++ .+.+..    .++ .+++.++|+++.
T Consensus        31 ~~iiG~sGsGKSTLl~-~i~Gl~----~p~-~G~I~~~G~~i~   67 (258)
T d1b0ua_          31 ISIIGSSGSGKSTFLR-CINFLE----KPS-EGAIIVNGQNIN   67 (258)
T ss_dssp             EEEECCTTSSHHHHHH-HHTTSS----CCS-EEEEEETTEECC
T ss_pred             EEEECCCCCcHHHHHH-HHHcCc----cCC-CCCEEECCEEec
Confidence            6799999999999994 555553    243 688889998874

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.51  E-value=1.8e-05  Score=45.59  Aligned_cols=25  Identities=28%  Similarity=0.433  Sum_probs=20.9

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhh
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .+.-+|+|.|++|+|||||++++..
T Consensus         5 ~~~K~I~i~G~~GsGKTTla~~La~   29 (192)
T d1lw7a2           5 FFAKTVAILGGESSGKSVLVNKLAA   29 (192)
T ss_dssp             GTCEEEEEECCTTSHHHHHHHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHH
Confidence            3456899999999999999977654

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.45  E-value=2.5e-05  Score=44.88  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=19.4

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..||+|+|++|+||||+.+.+..
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~   26 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELAS   26 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999976654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.45  E-value=3.6e-05  Score=45.01  Aligned_cols=25  Identities=32%  Similarity=0.620  Sum_probs=21.0

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFH   55 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~   55 (76)
                      .|+++|.++||||||+++++...+.
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~~~   26 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKKVR   26 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCCCS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCce
Confidence            4899999999999999988865443

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.35  E-value=6.1e-05  Score=44.23  Aligned_cols=22  Identities=36%  Similarity=0.514  Sum_probs=19.3

Q ss_pred             eEEEECCCCCcchhhhhhhhhC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~   52 (76)
                      .|.++|.++||||||+++++..
T Consensus         3 ~VaivG~~nvGKSTLin~L~~~   24 (180)
T d1udxa2           3 DVGLVGYPNAGKSSLLAAMTRA   24 (180)
T ss_dssp             SEEEECCGGGCHHHHHHHHCSS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999988754

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.34  E-value=3.9e-05  Score=45.63  Aligned_cols=23  Identities=35%  Similarity=0.531  Sum_probs=20.5

Q ss_pred             eeEEEECCCCCcchhhhhhhhhC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      .+|+|+|.+++|||||+++++..
T Consensus        24 ~~I~lvG~~n~GKSTLin~L~g~   46 (195)
T d1svia_          24 PEIALAGRSNVGKSSFINSLINR   46 (195)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCCCHHHHHHHhcCC
Confidence            48999999999999999988754

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=97.31  E-value=0.00017  Score=45.33  Aligned_cols=38  Identities=18%  Similarity=0.347  Sum_probs=28.4

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      +.++|++|+|||||++ .+.+..    .|+ .+++.++|+++..
T Consensus        31 ~glvG~nGaGKSTLl~-~l~G~~----~p~-~G~i~i~G~~i~~   68 (238)
T d1vpla_          31 FGLIGPNGAGKTTTLR-IISTLI----KPS-SGIVTVFGKNVVE   68 (238)
T ss_dssp             EEEECCTTSSHHHHHH-HHTTSS----CCS-EEEEEETTEETTT
T ss_pred             EEEECCCCCCHHHHHH-HHhcCC----CCC-CCEEEECcEeccc
Confidence            5699999999999995 555553    233 6888899988653

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.31  E-value=4.9e-05  Score=45.41  Aligned_cols=20  Identities=35%  Similarity=0.619  Sum_probs=17.9

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      |+|+|++|+||++|+.+++.
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~   23 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFA   23 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999987764

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=97.30  E-value=5.6e-05  Score=47.24  Aligned_cols=37  Identities=30%  Similarity=0.460  Sum_probs=26.7

Q ss_pred             EEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCCccCCC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPGRDRQG   75 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~~~~~~   75 (76)
                      +.++|++|+|||||++. +.+..+     + .+.+.++|+++..
T Consensus        28 ~~iiG~nGaGKSTLl~~-l~Gl~~-----~-~G~I~~~g~~i~~   64 (231)
T d1l7vc_          28 LHLVGPNGAGKSTLLAR-MAGMTS-----G-KGSIQFAGQPLEA   64 (231)
T ss_dssp             EECBCCTTSSHHHHHHH-HHTSCC-----C-SSEEEESSSBGGG
T ss_pred             EEEECCCCCcHHHHHHH-HhCCCC-----C-ceEEEECCEECCc
Confidence            67999999999999954 445422     1 3667788887654

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=5.6e-05  Score=42.56  Aligned_cols=21  Identities=24%  Similarity=0.488  Sum_probs=17.7

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .|+++|++|+||||+.+.+..
T Consensus         4 ~I~l~G~~GsGKSTvak~La~   24 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQ   24 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            589999999999999965543

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.26  E-value=4e-05  Score=45.15  Aligned_cols=22  Identities=32%  Similarity=0.410  Sum_probs=19.3

Q ss_pred             eEEEECCCCCcchhhhhhhhhC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~   52 (76)
                      +|.++|.++||||||+++++..
T Consensus         3 ~VaiiG~~nvGKSSLin~L~~~   24 (185)
T d1lnza2           3 DVGLVGFPSVGKSTLLSVVSSA   24 (185)
T ss_dssp             CEEEESSTTSSHHHHHHHSEEE
T ss_pred             eEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999988643

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=6.8e-05  Score=43.01  Aligned_cols=20  Identities=30%  Similarity=0.547  Sum_probs=17.6

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      |+|.|++|+|||+|+..++.
T Consensus         4 v~ItG~~GtGKTtl~~~i~~   23 (189)
T d2i3ba1           4 VFLTGPPGVGKTTLIHKASE   23 (189)
T ss_dssp             EEEESCCSSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999987664

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.22  E-value=0.00016  Score=46.35  Aligned_cols=34  Identities=29%  Similarity=0.584  Sum_probs=23.6

Q ss_pred             eEEEECCCCCcchhhhhhhhhCcCCCcCCCceeEEEEeCC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRGQFHEYQESTIGGCGNVPG   70 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~~f~~~~~~tig~~~~~~~   70 (76)
                      ++.|+|++|+|||||++ .+.+.+    .++ .+.+.++|
T Consensus        64 ~vaivG~nGsGKSTLl~-~i~Gl~----~p~-~G~I~~~g   97 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLM-LILGEL----EAS-EGIIKHSG   97 (281)
T ss_dssp             EEEEEESTTSSHHHHHH-HHHTSS----CCS-EEEEECCS
T ss_pred             EEEEECCCCChHHHHHH-HHhCCC----cCC-CcEEEECC
Confidence            37899999999999995 555543    344 34555655

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.21  E-value=7.4e-05  Score=42.78  Aligned_cols=20  Identities=25%  Similarity=0.454  Sum_probs=17.7

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      ++|+|.+|+|||||+.+++.
T Consensus         5 i~itG~~GSGKTTL~~~L~~   24 (170)
T d1np6a_           5 LAFAAWSGTGKTTLLKKLIP   24 (170)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCHHHHHHHHHH
Confidence            67899999999999987764

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.20  E-value=9.1e-05  Score=42.63  Aligned_cols=24  Identities=17%  Similarity=0.310  Sum_probs=19.9

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ...+|+|.|++|+||||+...+..
T Consensus         4 k~~~I~i~G~~GsGKTT~~~~La~   27 (174)
T d1y63a_           4 KGINILITGTPGTGKTSMAEMIAA   27 (174)
T ss_dssp             SSCEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHH
Confidence            457899999999999999965543

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=8e-05  Score=44.53  Aligned_cols=20  Identities=35%  Similarity=0.624  Sum_probs=17.9

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      |+|+|++|+||++|+.+++.
T Consensus         6 ivl~Gpsg~GK~tl~~~L~~   25 (178)
T d1kgda_           6 LVLLGAHGVGRRHIKNTLIT   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999987774

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.16  E-value=8.5e-05  Score=43.92  Aligned_cols=20  Identities=50%  Similarity=0.599  Sum_probs=17.1

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      |+|+|++|+||+||+..+..
T Consensus         5 ivl~GpsG~GK~tl~~~L~~   24 (182)
T d1znwa1           5 VVLSGPSAVGKSTVVRCLRE   24 (182)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            67889999999999976654

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.16  E-value=8.7e-05  Score=44.53  Aligned_cols=20  Identities=40%  Similarity=0.659  Sum_probs=17.5

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      |||+|++|+||++|+.+++.
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~   22 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQ   22 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78999999999999977654

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=97.14  E-value=0.00035  Score=43.78  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=21.9

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      ..++|+|+|.+|+|||||++.++..
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~   55 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE   55 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC
Confidence            4689999999999999999887753

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.13  E-value=0.00011  Score=46.07  Aligned_cols=23  Identities=39%  Similarity=0.379  Sum_probs=19.2

Q ss_pred             eeEEEECCCCCcchhhhhhhhhC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      -..+++|.||||||||++.+..+
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~  118 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPG  118 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTT
T ss_pred             CeEEEECCCCCCHHHHHHhhcch
Confidence            35689999999999999877643

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.11  E-value=0.00011  Score=41.64  Aligned_cols=20  Identities=25%  Similarity=0.504  Sum_probs=17.4

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      |++.|.+|+||||++++++.
T Consensus         5 Iii~G~pGsGKTTla~~L~~   24 (152)
T d1ly1a_           5 ILTIGCPGSGKSTWAREFIA   24 (152)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999987764

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.10  E-value=0.00011  Score=45.00  Aligned_cols=20  Identities=30%  Similarity=0.521  Sum_probs=17.6

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      ++|+||+|+||++|+.+++.
T Consensus         5 ivi~GPSG~GK~tl~~~L~~   24 (205)
T d1s96a_           5 YIVSAPSGAGKSSLIQALLK   24 (205)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHh
Confidence            67889999999999987765

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.08  E-value=0.00012  Score=41.66  Aligned_cols=20  Identities=30%  Similarity=0.534  Sum_probs=17.1

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      |++.|++|+||||+.+++..
T Consensus         5 I~i~G~~GsGKTTva~~L~~   24 (176)
T d2bdta1           5 YIITGPAGVGKSTTCKRLAA   24 (176)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            78899999999999876653

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.08  E-value=0.00013  Score=42.53  Aligned_cols=22  Identities=32%  Similarity=0.508  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ++|+|+|++|+||||+...+..
T Consensus         1 m~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1zina1           1 MNLVLMGLPGAGKGTQAEKIVA   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999965543

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.01  E-value=0.00017  Score=42.67  Aligned_cols=23  Identities=26%  Similarity=0.484  Sum_probs=19.5

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|+++|++|+||||+..++..
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~   25 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAK   25 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999976553

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=96.99  E-value=0.00017  Score=42.43  Aligned_cols=22  Identities=32%  Similarity=0.517  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      +||+|+|++|+||||+..++..
T Consensus         1 M~I~i~G~pGSGKsT~a~~La~   22 (182)
T d1s3ga1           1 MNIVLMGLPGAGKGTQADRIVE   22 (182)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4799999999999999976554

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=96.99  E-value=0.00019  Score=42.99  Aligned_cols=25  Identities=16%  Similarity=0.373  Sum_probs=21.4

Q ss_pred             cceeeEEEECCCCCcchhhhhhhhh
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ...++|+|+|++|+||||+..++..
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~   28 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITK   28 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHH
Confidence            3578999999999999999976664

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.99  E-value=0.00018  Score=42.22  Aligned_cols=22  Identities=23%  Similarity=0.582  Sum_probs=19.0

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ++|+++|++|+||||+..++..
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~   22 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAE   22 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999976654

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.98  E-value=0.00016  Score=41.99  Aligned_cols=21  Identities=24%  Similarity=0.502  Sum_probs=17.6

Q ss_pred             eE-EEECCCCCcchhhhhhhhh
Q psy1355          31 KL-VLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 ki-vllG~~~vGKtsl~~~~~~   51 (76)
                      |+ .|+|.+|+|||||+.+++.
T Consensus         2 kii~I~G~~gSGKTTli~~l~~   23 (165)
T d1xjca_           2 NVWQVVGYKHSGKTTLMEKWVA   23 (165)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEEeCCCCCHHHHHHHHHH
Confidence            45 4999999999999987764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.93  E-value=0.00016  Score=42.84  Aligned_cols=22  Identities=23%  Similarity=0.303  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .+|+|+|++|+||||+...+..
T Consensus         4 m~I~i~GppGsGKsT~a~~La~   25 (189)
T d1zaka1           4 LKVMISGAPASGKGTQCELIKT   25 (189)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            5799999999999999965543

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=96.91  E-value=0.00033  Score=41.26  Aligned_cols=24  Identities=21%  Similarity=0.286  Sum_probs=21.2

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..++|.++|..++|||||+++++.
T Consensus         4 k~inIaiiG~~naGKSTL~n~L~~   27 (179)
T d1wb1a4           4 KNINLGIFGHIDHGKTTLSKVLTE   27 (179)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CCEEEEEEeCCCCcHHHHHHHHHH
Confidence            356899999999999999998874

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.89  E-value=0.00024  Score=41.78  Aligned_cols=23  Identities=22%  Similarity=0.456  Sum_probs=19.6

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..+|+|+|+.|+||||+...+..
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~   24 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQE   24 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            46899999999999999976654

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.89  E-value=0.00019  Score=41.66  Aligned_cols=20  Identities=40%  Similarity=0.542  Sum_probs=16.8

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      +|+++|.+||||||+.+.+.
T Consensus         3 ~IvliG~~G~GKSTig~~La   22 (165)
T d2iyva1           3 KAVLVGLPGSGKSTIGRRLA   22 (165)
T ss_dssp             SEEEECSTTSSHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHH
Confidence            68999999999999985443

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.89  E-value=0.00021  Score=41.88  Aligned_cols=22  Identities=23%  Similarity=0.486  Sum_probs=18.6

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      +||+++|++|+||||+..++..
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~   22 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIME   22 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHH
Confidence            4899999999999999865543

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.87  E-value=0.00019  Score=43.52  Aligned_cols=21  Identities=29%  Similarity=0.335  Sum_probs=18.0

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|.|++|+|||+|+.+++.
T Consensus        31 ~i~i~G~~G~GKTsLl~~~~~   51 (283)
T d2fnaa2          31 ITLVLGLRRTGKSSIIKIGIN   51 (283)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            467889999999999988764

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.84  E-value=0.00025  Score=40.60  Aligned_cols=20  Identities=35%  Similarity=0.512  Sum_probs=16.6

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      ++|+|.+|+||||+.+.+..
T Consensus         9 ivl~G~~GsGKsT~a~~La~   28 (171)
T d1knqa_           9 YVLMGVSGSGKSAVASEVAH   28 (171)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            56789999999999976654

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=96.80  E-value=7.6e-05  Score=47.01  Aligned_cols=23  Identities=39%  Similarity=0.436  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCcchhhhhhhhhC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      -..+++|.||||||||++.+..+
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~  120 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPE  120 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-
T ss_pred             ceEEEECCCCccHHHHHHhhccH
Confidence            45689999999999999877653

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.75  E-value=0.00031  Score=42.31  Aligned_cols=21  Identities=33%  Similarity=0.559  Sum_probs=18.5

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|+|..|+|||||+.++..
T Consensus         2 vi~v~G~~GsGKTTLl~~ll~   22 (244)
T d1yrba1           2 IVVFVGTAGSGKTTLTGEFGR   22 (244)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEcCCCCcHHHHHHHHHH
Confidence            478999999999999988764

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.00058  Score=40.34  Aligned_cols=22  Identities=23%  Similarity=0.338  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-|+++|.+|+||||+..++..
T Consensus        15 ~liil~G~pGsGKST~a~~l~~   36 (172)
T d1yj5a2          15 EVVVAVGFPGAGKSTFIQEHLV   36 (172)
T ss_dssp             CEEEEECCTTSSHHHHHHHHTG
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4678899999999999987754

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.69  E-value=0.00047  Score=39.26  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=17.8

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      -+-|+++|.+|+||||+.+.+.
T Consensus         6 g~~I~l~G~~GsGKTTia~~La   27 (183)
T d1m8pa3           6 GFTIFLTGYMNSGKDAIARALQ   27 (183)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            3668899999999999885444

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.67  E-value=0.00041  Score=42.32  Aligned_cols=20  Identities=30%  Similarity=0.433  Sum_probs=17.4

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      |++.|++|||||+|.+.+..
T Consensus        35 ilL~GpPGtGKT~la~~la~   54 (273)
T d1gvnb_          35 FLLGGQPGSGKTSLRSAIFE   54 (273)
T ss_dssp             EEEECCTTSCTHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            88999999999999976654

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.66  E-value=0.00042  Score=39.46  Aligned_cols=20  Identities=35%  Similarity=0.511  Sum_probs=15.7

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      |+|.|.+|+||||+.+.+..
T Consensus         6 I~l~G~~GsGKsTva~~L~~   25 (178)
T d1qhxa_           6 IILNGGSSAGKSGIVRCLQS   25 (178)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45559999999999975554

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.66  E-value=0.0004  Score=40.02  Aligned_cols=20  Identities=30%  Similarity=0.474  Sum_probs=16.0

Q ss_pred             eEE-EECCCCCcchhhhhhhh
Q psy1355          31 KLV-LLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kiv-llG~~~vGKtsl~~~~~   50 (76)
                      |++ +.|..|+||||+++.+.
T Consensus         2 kiivi~G~~GsGKTT~~~~La   22 (194)
T d1nksa_           2 KIGIVTGIPGVGKSTVLAKVK   22 (194)
T ss_dssp             EEEEEEECTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            565 56999999999996554

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=96.66  E-value=0.00042  Score=39.63  Aligned_cols=19  Identities=32%  Similarity=0.522  Sum_probs=15.7

Q ss_pred             EEEECCCCCcchhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~   50 (76)
                      |+|.|++|+||||+.+.+.
T Consensus         7 I~l~G~~GsGKSTia~~La   25 (176)
T d1zp6a1           7 LLLSGHPGSGKSTIAEALA   25 (176)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6688999999999985444

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.66  E-value=0.0006  Score=45.30  Aligned_cols=23  Identities=26%  Similarity=0.407  Sum_probs=20.9

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .++|+++|.+|+|||||++.++.
T Consensus        56 ~l~Iai~G~~n~GKSSLiNaL~G   78 (400)
T d1tq4a_          56 VLNVAVTGETGSGKSSFINTLRG   78 (400)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHT
T ss_pred             CcEEEEECCCCCCHHHHHHHHhC
Confidence            58999999999999999987774

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=96.63  E-value=0.0005  Score=40.56  Aligned_cols=22  Identities=27%  Similarity=0.434  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|+|+|++|+||||+..++..
T Consensus         7 ~iI~i~G~pGSGKsT~a~~La~   28 (194)
T d1qf9a_           7 NVVFVLGGPGSGKGTQCANIVR   28 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            4678899999999999977664

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.63  E-value=0.00054  Score=40.31  Aligned_cols=22  Identities=27%  Similarity=0.474  Sum_probs=18.8

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ++|+|+|++|+||||+..++..
T Consensus         2 ~iI~i~GppGSGKsT~a~~La~   23 (194)
T d1teva_           2 LVVFVLGGPGAGKGTQCARIVE   23 (194)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            5789999999999999976654

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.60  E-value=0.00057  Score=41.30  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=18.4

Q ss_pred             eEEEECCCCCcchhhhhhhhhC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~   52 (76)
                      -+++.|++|+|||++++.+...
T Consensus        45 ~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          45 RATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999766543

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.57  E-value=0.00056  Score=41.90  Aligned_cols=22  Identities=36%  Similarity=0.610  Sum_probs=18.0

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      +-.++++|++|||||+++..+.
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA   64 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLA   64 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHH
Confidence            3468999999999999986544

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=96.55  E-value=0.00056  Score=43.61  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=18.1

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      .-.++++|++|||||+|+..+.
T Consensus        39 k~n~lLVG~~GvGKTalv~~la   60 (268)
T d1r6bx2          39 KNNPLLVGESGVGKTAIAEGLA   60 (268)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             cCCcEEECCCCCcHHHHHHHHH
Confidence            3468999999999999986544

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.53  E-value=0.00055  Score=39.72  Aligned_cols=21  Identities=29%  Similarity=0.512  Sum_probs=17.3

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .|+++|.+|+||||+.+.+..
T Consensus         2 ~I~liG~~GsGKsTi~k~La~   22 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAK   22 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999865543

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.46  E-value=0.00065  Score=40.15  Aligned_cols=21  Identities=24%  Similarity=0.507  Sum_probs=17.7

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -|+++|++|+||||+..++..
T Consensus        10 iI~i~GppGSGKsT~a~~La~   30 (196)
T d1ukza_          10 VIFVLGGPGAGKGTQCEKLVK   30 (196)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            478899999999999976654

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.45  E-value=0.00068  Score=39.85  Aligned_cols=22  Identities=27%  Similarity=0.454  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-|+++|-+|+||||+.+++..
T Consensus         3 ~li~l~GlpgsGKSTla~~L~~   24 (213)
T d1bifa1           3 TLIVMVGLPARGKTYISKKLTR   24 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            4578999999999999976653

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.44  E-value=0.00066  Score=41.13  Aligned_cols=21  Identities=24%  Similarity=0.466  Sum_probs=17.8

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .+++.|++|+|||++++.+..
T Consensus        37 ~~L~~GPpGtGKT~lA~~la~   57 (238)
T d1in4a2          37 HVLLAGPPGLGKTTLAHIIAS   57 (238)
T ss_dssp             CEEEESSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHh
Confidence            488999999999999975554

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.43  E-value=0.00073  Score=39.27  Aligned_cols=19  Identities=11%  Similarity=0.377  Sum_probs=16.3

Q ss_pred             EEEECCCCCcchhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~   50 (76)
                      |+++|.+|+||||+.+.+.
T Consensus         5 Iil~G~~GsGKSTia~~LA   23 (170)
T d1e6ca_           5 IFMVGARGCGMTTVGRELA   23 (170)
T ss_dssp             EEEESCTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            7789999999999986554

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=96.42  E-value=0.00074  Score=38.60  Aligned_cols=19  Identities=21%  Similarity=0.296  Sum_probs=15.9

Q ss_pred             EEEECCCCCcchhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~   50 (76)
                      |++.|..|+||||++.++.
T Consensus         4 I~i~G~~GsGKsT~~~~L~   22 (190)
T d1khta_           4 VVVTGVPGVGSTTSSQLAM   22 (190)
T ss_dssp             EEEECCTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5677999999999997554

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.37  E-value=0.00079  Score=40.87  Aligned_cols=21  Identities=29%  Similarity=0.570  Sum_probs=17.6

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+++.|++|+|||++++-+..
T Consensus        37 ~~Ll~GPpG~GKTtla~~la~   57 (239)
T d1ixsb2          37 HLLLFGPPGLGKTTLAHVIAH   57 (239)
T ss_dssp             CEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            478999999999999965553

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.21  E-value=0.001  Score=42.54  Aligned_cols=22  Identities=23%  Similarity=0.638  Sum_probs=17.9

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      --++++||+|||||.|.+.+..
T Consensus        50 ~~iLl~GPpG~GKT~lAkalA~   71 (309)
T d1ofha_          50 KNILMIGPTGVGKTEIARRLAK   71 (309)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHhh
Confidence            3478899999999999976554

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.17  E-value=0.0011  Score=40.18  Aligned_cols=21  Identities=19%  Similarity=0.373  Sum_probs=17.9

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .+++.|++|+|||++++.++.
T Consensus        54 ~lll~GPpG~GKTt~a~~la~   74 (253)
T d1sxja2          54 AAMLYGPPGIGKTTAAHLVAQ   74 (253)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            488999999999999976654

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.15  E-value=0.0017  Score=40.63  Aligned_cols=32  Identities=25%  Similarity=0.366  Sum_probs=25.0

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcC-CCcCCC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQF-HEYQES   60 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f-~~~~~~   60 (76)
                      .-+|+|+|+.++|||||++.++...+ +....+
T Consensus        26 ~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~   58 (299)
T d2akab1          26 LPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGI   58 (299)
T ss_dssp             CCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSC
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCc
Confidence            44799999999999999998887665 444433

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.13  E-value=0.00071  Score=39.32  Aligned_cols=21  Identities=24%  Similarity=0.382  Sum_probs=17.4

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      +.|+++|.+|+||||+.+.+.
T Consensus        20 ~vI~L~G~pGSGKTTiAk~La   40 (195)
T d1x6va3          20 CTVWLTGLSGAGKTTVSMALE   40 (195)
T ss_dssp             EEEEEESSCHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHH
Confidence            457789999999999996554

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.11  E-value=0.0014  Score=37.76  Aligned_cols=21  Identities=19%  Similarity=0.313  Sum_probs=17.9

Q ss_pred             EEEECCCCCcchhhhhhhhhC
Q psy1355          32 LVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~~   52 (76)
                      +.+.|++|+|||+|+.+++.+
T Consensus        26 ~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          26 TEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            578899999999999887753

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.0013  Score=39.48  Aligned_cols=20  Identities=25%  Similarity=0.617  Sum_probs=17.4

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      +++.|++|+|||++++.++.
T Consensus        36 lll~Gp~G~GKTtl~~~i~~   55 (237)
T d1sxjd2          36 MLFYGPPGTGKTSTILALTK   55 (237)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCChHHHHHHHHH
Confidence            78999999999999976654

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=96.10  E-value=0.0016  Score=37.71  Aligned_cols=22  Identities=27%  Similarity=0.306  Sum_probs=18.4

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      .+-|.|.|++|+|||||.+++.
T Consensus        22 ~~iIgI~G~~GSGKSTla~~L~   43 (198)
T d1rz3a_          22 RLVLGIDGLSRSGKTTLANQLS   43 (198)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4567799999999999997655

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.09  E-value=0.0012  Score=39.03  Aligned_cols=20  Identities=20%  Similarity=0.469  Sum_probs=17.4

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      |+|+|++|+||||+..++..
T Consensus        11 I~l~G~pGSGKsT~a~~La~   30 (194)
T d3adka_          11 IFVVGGPGSGKGTQCEKIVQ   30 (194)
T ss_dssp             EEEEECTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            67899999999999977664

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.05  E-value=0.0013  Score=39.92  Aligned_cols=20  Identities=25%  Similarity=0.376  Sum_probs=16.0

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      +++.|++|+|||++++.+..
T Consensus        49 l~l~GppGtGKT~l~~~l~~   68 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVK   68 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHH
Confidence            44569999999999976554

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.05  E-value=0.0015  Score=39.42  Aligned_cols=21  Identities=33%  Similarity=0.627  Sum_probs=17.8

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+++.|++|+|||++++.+..
T Consensus        47 ~lll~Gp~G~GKTtla~~iak   67 (231)
T d1iqpa2          47 HLLFAGPPGVGKTTAALALAR   67 (231)
T ss_dssp             EEEEESCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHH
Confidence            389999999999999976554

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.0016  Score=39.46  Aligned_cols=22  Identities=23%  Similarity=0.514  Sum_probs=18.6

Q ss_pred             eEEEECCCCCcchhhhhhhhhC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~   52 (76)
                      .+++.|+.|+|||++++.++..
T Consensus        35 ~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          35 HLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999766653

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.90  E-value=0.0017  Score=41.24  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      +||.++|-++||||||++.++.
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~   22 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATL   22 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC
T ss_pred             CcEeEECCCCCCHHHHHHHHHC
Confidence            5899999999999999987764

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=95.89  E-value=0.0016  Score=39.16  Aligned_cols=22  Identities=23%  Similarity=0.237  Sum_probs=18.6

Q ss_pred             eEEEECCCCCcchhhhhhhhhC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~   52 (76)
                      -++|.|++|+|||+|..+|+..
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3678899999999999988743

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=95.86  E-value=0.0019  Score=40.17  Aligned_cols=23  Identities=22%  Similarity=0.384  Sum_probs=18.7

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..-|++.|++|||||++++....
T Consensus        40 ~~~vLL~GppGtGKT~la~alA~   62 (246)
T d1d2na_          40 LVSVLLEGPPHSGKTALAAKIAE   62 (246)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHhh
Confidence            34689999999999999965553

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.0021  Score=38.65  Aligned_cols=20  Identities=20%  Similarity=0.466  Sum_probs=16.9

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .+++.|++|+|||++++.+.
T Consensus        38 ~~ll~Gp~G~GKTt~a~~la   57 (224)
T d1sxjb2          38 HMIISGMPGIGKTTSVHCLA   57 (224)
T ss_dssp             CEEEECSTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCchhhHHHHH
Confidence            37899999999999986554

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=95.78  E-value=0.0014  Score=43.63  Aligned_cols=27  Identities=44%  Similarity=0.749  Sum_probs=20.6

Q ss_pred             eeEEEECCCCCcchhhh----hhhhhCcCCC
Q psy1355          30 YKLVLLGESAVGKSSLV----LRFVRGQFHE   56 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~----~~~~~~~f~~   56 (76)
                      -.+++||++|||||+|+    +++..+..+.
T Consensus        44 ~n~llvG~~GvGKtaiv~~la~~i~~~~vp~   74 (387)
T d1qvra2          44 NNPVLIGEPGVGKTAIVEGLAQRIVKGDVPE   74 (387)
T ss_dssp             CCCEEEECTTSCHHHHHHHHHHHHHHTCSCT
T ss_pred             CCCeEECCCCCCHHHHHHHHHHHHHhCCCCH
Confidence            34799999999999988    4555665554

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=95.78  E-value=0.0033  Score=39.51  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=21.9

Q ss_pred             eeEEEECCCCCcchhhhhhhhhCcC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRGQF   54 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~~f   54 (76)
                      -+|+|+|+.++|||||++.++...+
T Consensus        25 P~ivVvG~~ssGKSSliNaLlG~~~   49 (306)
T d1jwyb_          25 PQIVVVGSQSSGKSSVLENIVGRDF   49 (306)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHTSCC
T ss_pred             CeEEEEeCCCCCHHHHHHHHhCCCC
Confidence            3799999999999999998887665

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=95.75  E-value=0.0026  Score=37.81  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=17.8

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .++|.+-|++|+||||+..++..
T Consensus         3 ~i~IaIdGp~GsGKgT~ak~La~   25 (223)
T d1q3ta_           3 TIQIAIDGPASSGKSTVAKIIAK   25 (223)
T ss_dssp             CCEEEEECSSCSSHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35667779999999999965543

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.74  E-value=0.0044  Score=36.65  Aligned_cols=22  Identities=32%  Similarity=0.314  Sum_probs=18.5

Q ss_pred             eEEEECCCCCcchhhhhhhhhC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~   52 (76)
                      -++|.|++|+|||+|+.+|+..
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            3678899999999999888753

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=95.72  E-value=0.0027  Score=39.80  Aligned_cols=25  Identities=28%  Similarity=0.523  Sum_probs=22.0

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhhC
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      ..+++.++|-++||||||++.+...
T Consensus       111 ~~~~v~vvG~PNvGKSsliN~L~~~  135 (273)
T d1puja_         111 RAIRALIIGIPNVGKSTLINRLAKK  135 (273)
T ss_dssp             CCEEEEEEESTTSSHHHHHHHHHTS
T ss_pred             CceEEEEEecCccchhhhhhhhhcc
Confidence            4688999999999999999887754

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.68  E-value=0.0023  Score=43.17  Aligned_cols=22  Identities=23%  Similarity=0.638  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      -.|++|||+|||||-|++++..
T Consensus        50 sNILliGPTGvGKTlLAr~LAk   71 (443)
T d1g41a_          50 KNILMIGPTGVGKTEIARRLAK   71 (443)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHH
T ss_pred             ccEEEECCCCCCHHHHHHHHHH
Confidence            3799999999999999876653

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=95.68  E-value=0.0021  Score=40.33  Aligned_cols=25  Identities=28%  Similarity=0.436  Sum_probs=21.5

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCc
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      .+|+-+||-++||||||+...+...
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~   26 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAG   26 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCC
Confidence            4799999999999999998777543

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.65  E-value=0.0032  Score=37.46  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=17.9

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      |-|.|-|++|+||||+.+.+..
T Consensus         3 ~iIgI~G~~gSGKSTla~~L~~   24 (213)
T d1uj2a_           3 FLIGVSGGTASGKSSVCAKIVQ   24 (213)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            5577999999999999965543

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.64  E-value=0.0026  Score=38.09  Aligned_cols=22  Identities=27%  Similarity=0.575  Sum_probs=18.6

Q ss_pred             eEEEECCCCCcchhhhhhhhhC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~   52 (76)
                      .+++.|+.|+|||++++.++..
T Consensus        37 ~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          37 HLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CEEEECSSSSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCChhHHHHHHHHH
Confidence            3789999999999999777653

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=95.62  E-value=0.0043  Score=39.24  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=21.3

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhC
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      .+|+.++|-++||||||++.++..
T Consensus        10 ~~kiGivG~Pn~GKSTlfnalT~~   33 (296)
T d1ni3a1          10 NLKTGIVGMPNVGKSTFFRAITKS   33 (296)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHS
T ss_pred             CcEEEEECCCCCCHHHHHHHHHCC
Confidence            489999999999999999887754

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=95.57  E-value=0.0029  Score=41.08  Aligned_cols=24  Identities=25%  Similarity=0.356  Sum_probs=20.9

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..+.|.+.|++|+|||||+.+++.
T Consensus        53 ~~~~IgitG~pGaGKSTLi~~l~~   76 (327)
T d2p67a1          53 NTLRLGVTGTPGAGKSTFLEAFGM   76 (327)
T ss_dssp             CSEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CceEEEeeCCCCCCHHHHHHHHHH
Confidence            367899999999999999988763

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=95.56  E-value=0.0029  Score=41.62  Aligned_cols=22  Identities=18%  Similarity=0.475  Sum_probs=18.3

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      .-.++++|++|||||-|.+++.
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA   89 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLA   89 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHH
Confidence            3448999999999999987654

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.55  E-value=0.0037  Score=37.53  Aligned_cols=24  Identities=33%  Similarity=0.552  Sum_probs=20.0

Q ss_pred             eeEEEECCCCCcchhhhhhhhhCc
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      .-+++.|++|+|||++...++..-
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            347899999999999998877654

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=95.51  E-value=0.0042  Score=38.19  Aligned_cols=22  Identities=14%  Similarity=0.431  Sum_probs=17.9

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      ...++++|+.||||||.+.++.
T Consensus        11 p~vi~lvGptGvGKTTTiAKLA   32 (213)
T d1vmaa2          11 PFVIMVVGVNGTGKTTSCGKLA   32 (213)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            4578899999999999876554

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0032  Score=37.63  Aligned_cols=21  Identities=24%  Similarity=0.235  Sum_probs=18.4

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|.|++|+|||+|..+|+.
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~   59 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCV   59 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            467889999999999998874

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=95.48  E-value=0.0031  Score=38.77  Aligned_cols=21  Identities=24%  Similarity=0.529  Sum_probs=12.9

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      .-++++|+.||||||.+.++.
T Consensus        13 ~vi~lvGptGvGKTTTiAKLA   33 (211)
T d1j8yf2          13 YVIMLVGVQGTGKATTAGKLA   33 (211)
T ss_dssp             EEEEEECSCCC----HHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            347789999999999876554

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=95.43  E-value=0.0035  Score=38.99  Aligned_cols=21  Identities=29%  Similarity=0.482  Sum_probs=18.0

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+++.|++|+|||++++.+..
T Consensus        44 giLl~GppGtGKT~la~aia~   64 (247)
T d1ixza_          44 GVLLVGPPGVGKTHLARAVAG   64 (247)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEecCCCCChhHHHHHHHH
Confidence            489999999999999976664

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.38  E-value=0.0044  Score=36.18  Aligned_cols=22  Identities=18%  Similarity=0.472  Sum_probs=18.5

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      .+-|++-|..|+||||+++.+.
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~   30 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFE   30 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTG
T ss_pred             ceEEEEECCCCCCHHHHHHHHH
Confidence            4678899999999999996554

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=95.34  E-value=0.0034  Score=37.69  Aligned_cols=22  Identities=36%  Similarity=0.591  Sum_probs=18.9

Q ss_pred             eEEEECCCCCcchhhhhhhhhC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~   52 (76)
                      -++|.|++|+|||+|+.+++.+
T Consensus        28 l~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          28 IILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4678899999999999888765

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.33  E-value=0.0047  Score=37.22  Aligned_cols=22  Identities=18%  Similarity=0.329  Sum_probs=19.7

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      .++|+++|..++|||||+.+++
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll   24 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALT   24 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEEeCCCCcHHHHHHHHH
Confidence            4789999999999999998875

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=95.33  E-value=0.0034  Score=37.08  Aligned_cols=21  Identities=14%  Similarity=0.129  Sum_probs=18.0

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++|.|++|+|||+++.+++.
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~   56 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCV   56 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            367889999999999988874

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=95.29  E-value=0.0041  Score=38.08  Aligned_cols=20  Identities=20%  Similarity=0.497  Sum_probs=16.5

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      -++++|+.||||||.+.++.
T Consensus         8 vi~lvGptGvGKTTTiaKLA   27 (207)
T d1okkd2           8 VVLVVGVNGVGKTTTIAKLG   27 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            46789999999999886654

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.26  E-value=0.0044  Score=37.22  Aligned_cols=24  Identities=29%  Similarity=0.506  Sum_probs=20.0

Q ss_pred             eeEEEECCCCCcchhhhhhhhhCc
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      .-+++.|++|+|||++...++..-
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            447899999999999998887644

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.18  E-value=0.0046  Score=38.75  Aligned_cols=22  Identities=27%  Similarity=0.428  Sum_probs=18.1

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-|.|.|.+|+|||+|+..+.+
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~   66 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALS   66 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3577999999999999976543

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=95.17  E-value=0.0034  Score=39.95  Aligned_cols=20  Identities=25%  Similarity=0.516  Sum_probs=17.5

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      -++++|+.|+|||+|++++.
T Consensus        30 ~vLl~G~pG~GKT~lar~~~   49 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALA   49 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHH
Confidence            48999999999999997664

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.17  E-value=0.0046  Score=37.56  Aligned_cols=20  Identities=20%  Similarity=0.358  Sum_probs=16.8

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      +++.|++|+|||.|++-.++
T Consensus        39 l~l~G~~G~GKTHLl~A~~~   58 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGN   58 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            78999999999999965543

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=95.17  E-value=0.0055  Score=39.64  Aligned_cols=24  Identities=21%  Similarity=0.249  Sum_probs=21.1

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..+.|-+.|+.|+|||||+.+++.
T Consensus        50 ~~~~igitG~pGaGKSTli~~l~~   73 (323)
T d2qm8a1          50 RAIRVGITGVPGVGKSTTIDALGS   73 (323)
T ss_dssp             CSEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CceEEeeeCCCCCCHHHHHHHHHH
Confidence            468899999999999999988774

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.0046  Score=37.99  Aligned_cols=21  Identities=19%  Similarity=0.589  Sum_probs=17.4

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      .-++++|+.||||||.+.++.
T Consensus        10 ~vi~lvGptGvGKTTTiAKLA   30 (211)
T d2qy9a2          10 FVILMVGVNGVGKTTTIGKLA   30 (211)
T ss_dssp             EEEEEECCTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            457789999999999886655

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.16  E-value=0.0048  Score=37.50  Aligned_cols=20  Identities=25%  Similarity=0.393  Sum_probs=17.9

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      |.++|..++|||||+.+++.
T Consensus         8 IaIiGh~d~GKSTL~~~L~~   27 (227)
T d1g7sa4           8 VSVLGHVDHGKTTLLDHIRG   27 (227)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCccHHHHHHHHHh
Confidence            88999999999999987764

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=95.13  E-value=0.0069  Score=35.73  Aligned_cols=24  Identities=17%  Similarity=0.346  Sum_probs=20.8

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..++|.++|....|||||+.+++.
T Consensus         4 ~~inIaiiGhvd~GKSTL~~~L~g   27 (195)
T d1kk1a3           4 AEVNIGMVGHVDHGKTTLTKALTG   27 (195)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHT
T ss_pred             CcEEEEEEeccCCcHHHHHHHHHh
Confidence            456899999999999999988864

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=95.12  E-value=0.0049  Score=37.63  Aligned_cols=19  Identities=21%  Similarity=0.420  Sum_probs=15.6

Q ss_pred             EEEECCCCCcchhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~   50 (76)
                      ++++|+.||||||.+.++.
T Consensus        13 i~lvGp~GvGKTTTiaKLA   31 (207)
T d1ls1a2          13 WFLVGLQGSGKTTTAAKLA   31 (207)
T ss_dssp             EEEECCTTTTHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5778999999999886544

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.03  E-value=0.0055  Score=38.03  Aligned_cols=22  Identities=18%  Similarity=0.342  Sum_probs=18.2

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..+++.|++|+|||++++.+..
T Consensus        39 ~giLL~GppGtGKT~l~~ala~   60 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIARAVAN   60 (258)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHH
T ss_pred             ceeEEecCCCCCchHHHHHHHH
Confidence            4589999999999999965553

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.0058  Score=35.91  Aligned_cols=20  Identities=25%  Similarity=0.428  Sum_probs=15.6

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      |++.|++|+||+|+..++..
T Consensus         6 I~I~GppGSGKgT~ak~La~   25 (225)
T d1ckea_           6 ITIDGPSGAGKGTLCKAMAE   25 (225)
T ss_dssp             EEEECCTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHH
Confidence            45669999999999965443

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=95.02  E-value=0.0055  Score=38.33  Aligned_cols=21  Identities=19%  Similarity=0.377  Sum_probs=17.6

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      -.+++.|++|||||++++.+.
T Consensus        46 ~~iLL~GppGtGKT~la~~iA   66 (256)
T d1lv7a_          46 KGVLMVGPPGTGKTLLAKAIA   66 (256)
T ss_dssp             CEEEEECCTTSCHHHHHHHHH
T ss_pred             CeEEeeCCCCCCccHHHHHHH
Confidence            348999999999999996554

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=94.98  E-value=0.0045  Score=38.34  Aligned_cols=16  Identities=25%  Similarity=0.515  Sum_probs=14.0

Q ss_pred             EEEECCCCCcchhhhh
Q psy1355          32 LVLLGESAVGKSSLVL   47 (76)
Q Consensus        32 ivllG~~~vGKtsl~~   47 (76)
                      -+++|+.|+|||+++.
T Consensus        27 nvlvG~NgsGKS~iL~   42 (308)
T d1e69a_          27 TAIVGPNGSGKSNIID   42 (308)
T ss_dssp             EEEECCTTTCSTHHHH
T ss_pred             EEEECCCCCcHHHHHH
Confidence            3788999999999984

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.98  E-value=0.0061  Score=36.27  Aligned_cols=24  Identities=25%  Similarity=0.545  Sum_probs=19.7

Q ss_pred             eeEEEECCCCCcchhhhhhhhhCc
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRGQ   53 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~~   53 (76)
                      .-+++.|++|+|||++...++..-
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            458899999999999987777543

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.83  E-value=0.0058  Score=35.90  Aligned_cols=20  Identities=25%  Similarity=0.547  Sum_probs=16.9

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      -++|.|++|+|||+|+.+++
T Consensus        28 ~~~I~G~~G~GKT~la~~~~   47 (242)
T d1tf7a1          28 STLVSGTSGTGKTLFSIQFL   47 (242)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            46778999999999987765

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=94.73  E-value=0.0081  Score=38.77  Aligned_cols=22  Identities=14%  Similarity=0.415  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..+++.|+.|+||||+++-++.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~  188 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIME  188 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGG
T ss_pred             CCEEEEeeccccchHHHHHHhh
Confidence            3489999999999999976554

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=94.71  E-value=0.0072  Score=38.69  Aligned_cols=20  Identities=20%  Similarity=0.564  Sum_probs=16.9

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      -++++|++|||||.|.+.+.
T Consensus        54 ~~lf~Gp~GvGKT~lak~la   73 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLS   73 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHH
Confidence            47899999999999986544

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=94.67  E-value=0.012  Score=36.01  Aligned_cols=24  Identities=25%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             cceeeEEEECCCCCcchhhhhhhh
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~   50 (76)
                      ...++++++|....|||||+.+++
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll   30 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLL   30 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHH
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHH
Confidence            357889999999999999998875

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.63  E-value=0.001  Score=38.02  Aligned_cols=16  Identities=31%  Similarity=0.443  Sum_probs=13.7

Q ss_pred             EEECCCCCcchhhhhh
Q psy1355          33 VLLGESAVGKSSLVLR   48 (76)
Q Consensus        33 vllG~~~vGKtsl~~~   48 (76)
                      +|+|+.|+|||+|+.-
T Consensus        28 vi~G~NGsGKStil~A   43 (222)
T d1qhla_          28 TLSGGNGAGKSTTMAA   43 (222)
T ss_dssp             HHHSCCSHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHH
Confidence            5779999999999953

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.57  E-value=0.0072  Score=37.70  Aligned_cols=22  Identities=18%  Similarity=0.326  Sum_probs=18.1

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-+++.|++|+|||+|++.++.
T Consensus        42 ~giLL~Gp~GtGKT~l~~ala~   63 (265)
T d1r7ra3          42 KGVLFYGPPGCGKTLLAKAIAN   63 (265)
T ss_dssp             CEEEEBCCTTSSHHHHHHHHHH
T ss_pred             CeEEEECCCCCcchhHHHHHHH
Confidence            3488999999999999976553

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=94.30  E-value=0.0044  Score=37.52  Aligned_cols=24  Identities=33%  Similarity=0.386  Sum_probs=19.3

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .-+-|++.|-+|+|||||.+.+..
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~   46 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEH   46 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHH
Confidence            345689999999999999965543

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=94.27  E-value=0.016  Score=34.45  Aligned_cols=24  Identities=21%  Similarity=0.322  Sum_probs=20.7

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..++|.++|....|||||+.+++.
T Consensus         7 p~ini~iiGhVd~GKSTL~~~L~~   30 (205)
T d2qn6a3           7 PEVNIGVVGHVDHGKTTLVQAITG   30 (205)
T ss_dssp             CCEEEEEECSTTSSHHHHHHHHHS
T ss_pred             CCeEEEEEEccCCcHHHHHHHHHh
Confidence            357999999999999999988864

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=94.22  E-value=0.012  Score=34.71  Aligned_cols=23  Identities=26%  Similarity=0.472  Sum_probs=19.1

Q ss_pred             eeEEEECCCCCcchhhhhhhhhC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      .-|.+-|+-|+|||++++.++..
T Consensus        34 ~ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          34 IMVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEecCCCccHHHHHHHHHhh
Confidence            34778899999999999877754

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=94.16  E-value=0.011  Score=35.99  Aligned_cols=22  Identities=23%  Similarity=0.335  Sum_probs=18.7

Q ss_pred             eEEEECCCCCcchhhhhhhhhC
Q psy1355          31 KLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~~   52 (76)
                      -.++.|--|+|||||+++++..
T Consensus         5 v~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           5 VTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEESSSSSCHHHHHHHHHS
T ss_pred             EEEEeeCCCCCHHHHHHHHHhc
Confidence            3578899999999999988864

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=94.07  E-value=0.011  Score=36.10  Aligned_cols=20  Identities=30%  Similarity=0.385  Sum_probs=16.6

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      -.+|.|++|+|||+|+.+++
T Consensus        31 ~~~i~G~~G~GKS~l~l~la   50 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLA   50 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHH
Confidence            36688999999999997654

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=93.97  E-value=0.011  Score=37.79  Aligned_cols=20  Identities=25%  Similarity=0.373  Sum_probs=13.9

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      -|.|.|.+|+||||+.+.+.
T Consensus         6 IIgIaG~SGSGKTTva~~l~   25 (288)
T d1a7ja_           6 IISVTGSSGAGTSTVKHTFD   25 (288)
T ss_dssp             EEEEESCC---CCTHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            37899999999999997554

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=93.93  E-value=0.013  Score=35.85  Aligned_cols=21  Identities=19%  Similarity=0.463  Sum_probs=16.9

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      -+|+|.|..||||||+...+.
T Consensus         2 r~Iai~gKGGvGKTT~a~nLA   22 (269)
T d1cp2a_           2 RQVAIYGKGGIGKSTTTQNLT   22 (269)
T ss_dssp             EEEEEEECTTSSHHHHHHHHH
T ss_pred             CEEEEECCCcCCHHHHHHHHH
Confidence            367789999999999986543

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.81  E-value=0.016  Score=34.38  Aligned_cols=21  Identities=33%  Similarity=0.453  Sum_probs=17.2

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      .|+|-|.-|+||||++..+..
T Consensus         4 ~I~ieG~dGsGKST~~~~L~~   24 (241)
T d1p5zb_           4 KISIEGNIAAGKSTFVNILKQ   24 (241)
T ss_dssp             EEEEECSTTSSHHHHHTTTGG
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            477889999999999965543

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.79  E-value=0.015  Score=35.60  Aligned_cols=20  Identities=25%  Similarity=0.373  Sum_probs=16.6

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      +++.|.+|+|||+|+.++..
T Consensus        38 ~vi~G~~G~GKT~~~~~la~   57 (277)
T d1cr2a_          38 IMVTSGSGMGKSTFVRQQAL   57 (277)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHH
Confidence            67889999999999876653

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=93.76  E-value=0.022  Score=33.07  Aligned_cols=22  Identities=18%  Similarity=0.232  Sum_probs=17.6

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      .+-|.|.|..|+||||+...+.
T Consensus         3 p~IIgitG~~gSGKstva~~l~   24 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLR   24 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHH
Confidence            3567788999999999986544

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=93.70  E-value=0.022  Score=34.08  Aligned_cols=22  Identities=18%  Similarity=0.314  Sum_probs=19.6

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      .++|+++|....|||||+.+++
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~   24 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAIT   24 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHH
T ss_pred             CcEEEEEeCCCCcHHHHHHHHH
Confidence            4789999999999999998775

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.55  E-value=0.02  Score=33.41  Aligned_cols=20  Identities=25%  Similarity=0.434  Sum_probs=16.7

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .|+|-|.-|+||||++..+.
T Consensus         2 lI~ieG~dGsGKST~~~~L~   21 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLS   21 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            47889999999999986544

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=93.49  E-value=0.022  Score=36.61  Aligned_cols=24  Identities=29%  Similarity=0.357  Sum_probs=19.0

Q ss_pred             cceeeEEEECCCCCcchhhhhhhh
Q psy1355          27 ICQYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        27 ~~~~kivllG~~~vGKtsl~~~~~   50 (76)
                      ...|-|.|.|++|+||||+.+.+.
T Consensus        78 k~P~iIGIaG~sgSGKSTla~~L~  101 (308)
T d1sq5a_          78 RIPYIISIAGSVAVGKSTTARVLQ  101 (308)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCCCCcHHHHHHH
Confidence            345778899999999999985443

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.40  E-value=0.025  Score=35.64  Aligned_cols=39  Identities=18%  Similarity=0.030  Sum_probs=27.5

Q ss_pred             eeeEEEECCCCCcchhhhhhhhhCcCCCcC-----CCceeEEEE
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVRGQFHEYQ-----ESTIGGCGN   67 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~~~f~~~~-----~~tig~~~~   67 (76)
                      ..-|.++|+.+.|||+|++++....+.-..     ..|.|+-++
T Consensus        32 v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~   75 (277)
T d1f5na2          32 MVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMW   75 (277)
T ss_dssp             EEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEE
T ss_pred             EEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEE
Confidence            456779999999999999988876533221     245666544

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.39  E-value=0.019  Score=34.75  Aligned_cols=20  Identities=25%  Similarity=0.479  Sum_probs=16.6

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      +++.|+.|+|||++++.+..
T Consensus        37 ~Ll~Gp~G~GKtt~a~~~~~   56 (239)
T d1njfa_          37 YLFSGTRGVGKTSIARLLAK   56 (239)
T ss_dssp             EEEECSTTSSHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            67889999999999866543

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.34  E-value=0.015  Score=37.05  Aligned_cols=16  Identities=25%  Similarity=0.482  Sum_probs=13.8

Q ss_pred             EEEECCCCCcchhhhh
Q psy1355          32 LVLLGESAVGKSSLVL   47 (76)
Q Consensus        32 ivllG~~~vGKtsl~~   47 (76)
                      -+++|+.|+|||+|+-
T Consensus        28 ~~i~G~NGsGKS~ile   43 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMD   43 (427)
T ss_dssp             EEEECSTTSSHHHHHH
T ss_pred             EEEECCCCCCHHHHHH
Confidence            3678999999999984

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.01  E-value=0.023  Score=33.99  Aligned_cols=20  Identities=20%  Similarity=0.469  Sum_probs=17.5

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      +++.|+.|+|||++++.+..
T Consensus        27 lLl~Gp~G~GKtt~a~~~a~   46 (207)
T d1a5ta2          27 LLIQALPGMGDDALIYALSR   46 (207)
T ss_dssp             EEEECCTTSCHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHH
Confidence            88999999999999976654

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=92.99  E-value=0.023  Score=35.17  Aligned_cols=20  Identities=20%  Similarity=0.431  Sum_probs=16.2

Q ss_pred             eeEEEECCCCCcchhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRF   49 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~   49 (76)
                      -+|++.|..||||||+...+
T Consensus         3 r~IaisgKGGVGKTT~a~NL   22 (289)
T d2afhe1           3 RQCAIYGKGGIGKSTTTQNL   22 (289)
T ss_dssp             EEEEEEECTTSSHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46777899999999987544

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.71  E-value=0.027  Score=34.36  Aligned_cols=19  Identities=32%  Similarity=0.656  Sum_probs=14.1

Q ss_pred             eeeE-EEECCCCCcchhhhh
Q psy1355          29 QYKL-VLLGESAVGKSSLVL   47 (76)
Q Consensus        29 ~~ki-vllG~~~vGKtsl~~   47 (76)
                      ..|| ++.|..||||||+..
T Consensus        19 ~~~iii~sGKGGVGKTT~a~   38 (279)
T d1ihua2          19 EHGLIMLMGKGGVGKTTMAA   38 (279)
T ss_dssp             SCEEEEEECSTTSSHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHH
Confidence            3444 455999999999764

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=92.65  E-value=0.027  Score=35.43  Aligned_cols=21  Identities=24%  Similarity=0.490  Sum_probs=18.0

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      -.|.++|..++|||||+.+++
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll   23 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALL   23 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHH
T ss_pred             eEEEEEcCCCCcHHHHHHHHH
Confidence            358999999999999997664

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=92.57  E-value=0.048  Score=32.21  Aligned_cols=21  Identities=29%  Similarity=0.444  Sum_probs=17.2

Q ss_pred             eeEEEECCCCCcchhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~   50 (76)
                      |-|.|.|..|+||||++.-|.
T Consensus         3 ~iIgITG~igSGKStv~~~l~   23 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFT   23 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            557799999999999986443

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=92.56  E-value=0.028  Score=36.38  Aligned_cols=19  Identities=26%  Similarity=0.485  Sum_probs=14.9

Q ss_pred             EEEECCCCCcchhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~   50 (76)
                      +++.|++|||||.|.+.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala  144 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALG  144 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHH
Confidence            3446999999999986544

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=92.43  E-value=0.03  Score=35.82  Aligned_cols=22  Identities=14%  Similarity=0.306  Sum_probs=18.7

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      -|+.++|++|+|||+|+...+.
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~   65 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQ   65 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHH
Confidence            4788999999999999876654

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=92.42  E-value=0.031  Score=34.12  Aligned_cols=16  Identities=38%  Similarity=0.640  Sum_probs=13.4

Q ss_pred             EEEECCCCCcchhhhh
Q psy1355          32 LVLLGESAVGKSSLVL   47 (76)
Q Consensus        32 ivllG~~~vGKtsl~~   47 (76)
                      +++.|..||||||+..
T Consensus        11 i~~sGKGGVGKTTvaa   26 (296)
T d1ihua1          11 LFFTGKGGVGKTSISC   26 (296)
T ss_dssp             EEEECSTTSSHHHHHH
T ss_pred             EEEECCCcChHHHHHH
Confidence            4578999999999764

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=92.21  E-value=0.049  Score=32.28  Aligned_cols=23  Identities=30%  Similarity=0.492  Sum_probs=18.0

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      +|-|.|.|..|+||||+...|..
T Consensus         3 k~iIgitG~igSGKStv~~~l~~   25 (208)
T d1vhta_           3 RYIVALTGGIGSGKSTVANAFAD   25 (208)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             CEEEEEECCCcCCHHHHHHHHHH
Confidence            35567899999999999965543

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.09  E-value=0.031  Score=36.05  Aligned_cols=23  Identities=26%  Similarity=0.381  Sum_probs=18.3

Q ss_pred             eeEEEECCCCCcchhhhhhhhhC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      .-++|+|.+|+|||+++..++..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            34899999999999988655543

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=91.88  E-value=0.039  Score=36.01  Aligned_cols=19  Identities=21%  Similarity=0.335  Sum_probs=16.2

Q ss_pred             eEEEECCCCCcchhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRF   49 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~   49 (76)
                      -+++.|++|+|||++...+
T Consensus       156 ~~~~~g~~~~gk~~~~~~~  174 (362)
T d1svma_         156 YWLFKGPIDSGKTTLAAAL  174 (362)
T ss_dssp             EEEEECSTTSSHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHH
Confidence            5889999999999988643

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=91.84  E-value=0.034  Score=35.47  Aligned_cols=21  Identities=29%  Similarity=0.575  Sum_probs=16.6

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -++++|++|||||.+.+.+..
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~   75 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAA   75 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHH
Confidence            367889999999998865443

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=91.74  E-value=0.05  Score=32.74  Aligned_cols=22  Identities=36%  Similarity=0.643  Sum_probs=19.1

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      .+.|+++|..+.|||||+-+++
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll   24 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLL   24 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHH
T ss_pred             ccEEEEEecCCCCHHHHHHHHH
Confidence            5689999999999999997664

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.57  E-value=0.055  Score=34.38  Aligned_cols=21  Identities=19%  Similarity=0.276  Sum_probs=17.3

Q ss_pred             eeeEEEECCCCCcchhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRF   49 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~   49 (76)
                      .|-|.|-|..|+|||||...+
T Consensus        27 P~iIGi~G~qGSGKSTl~~~l   47 (286)
T d1odfa_          27 PLFIFFSGPQGSGKSFTSIQI   47 (286)
T ss_dssp             CEEEEEECCTTSSHHHHHHHH
T ss_pred             CEEEEeECCCCCCHHHHHHHH
Confidence            467788999999999988543

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=91.50  E-value=0.061  Score=33.94  Aligned_cols=22  Identities=14%  Similarity=0.208  Sum_probs=18.7

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      .-.|.++|..++|||||+-+++
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll   27 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERIL   27 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHH
Confidence            4469999999999999997654

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=91.45  E-value=0.036  Score=34.26  Aligned_cols=16  Identities=19%  Similarity=0.524  Sum_probs=13.7

Q ss_pred             EEEECCCCCcchhhhh
Q psy1355          32 LVLLGESAVGKSSLVL   47 (76)
Q Consensus        32 ivllG~~~vGKtsl~~   47 (76)
                      ++|.|.+|+|||+.+.
T Consensus        27 ~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          27 LLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             EEEEECTTSCHHHHHH
T ss_pred             EEEEecCCccHHHHHH
Confidence            6788999999997663

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=91.34  E-value=0.046  Score=32.17  Aligned_cols=19  Identities=26%  Similarity=0.333  Sum_probs=15.9

Q ss_pred             EEEECCCCCcchhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~   50 (76)
                      |++-|.-|+||||++.++.
T Consensus         5 IviEG~dGsGKsT~~~~L~   23 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVV   23 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6777999999999986554

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.29  E-value=0.054  Score=33.26  Aligned_cols=22  Identities=23%  Similarity=0.445  Sum_probs=19.6

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      .+.|+++|....|||||+.+++
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll   27 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLI   27 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHH
T ss_pred             ccEEEEEeCCCCCHHHHHHHHH
Confidence            4799999999999999997764

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=91.17  E-value=0.05  Score=35.69  Aligned_cols=20  Identities=20%  Similarity=0.396  Sum_probs=17.7

Q ss_pred             EEEECCCCCcchhhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~~   51 (76)
                      |++.|+.|+||||.+..++.
T Consensus       161 iLvtGpTGSGKSTTl~~~l~  180 (401)
T d1p9ra_         161 ILVTGPTGSGKSTTLYAGLQ  180 (401)
T ss_dssp             EEEECSTTSCHHHHHHHHHH
T ss_pred             EEEEcCCCCCccHHHHHHhh
Confidence            88999999999999976665

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.03  E-value=0.041  Score=34.92  Aligned_cols=23  Identities=30%  Similarity=0.608  Sum_probs=19.6

Q ss_pred             eeEEEECCCCCcchhhhhhhhhC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      -|+.++|++++|||+|+...+.+
T Consensus        69 Qr~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          69 GKIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEeeCCCCCCHHHHHHHHHHH
Confidence            46889999999999999887654

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=90.97  E-value=0.056  Score=31.22  Aligned_cols=20  Identities=20%  Similarity=0.393  Sum_probs=15.7

Q ss_pred             eEEEECCC-CCcchhhhhhhh
Q psy1355          31 KLVLLGES-AVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~-~vGKtsl~~~~~   50 (76)
                      |++|.|-. |||||++...+.
T Consensus         3 ~~~i~gt~~GVGKTtvs~~La   23 (224)
T d1byia_           3 RYFVTGTDTEVGKTVASCALL   23 (224)
T ss_dssp             EEEEEESSTTSCHHHHHHHHH
T ss_pred             eEEEEECCCCccHHHHHHHHH
Confidence            67888985 999998875433

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=90.79  E-value=0.044  Score=33.72  Aligned_cols=22  Identities=27%  Similarity=0.465  Sum_probs=19.2

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      .+.|+++|....|||||+.+++
T Consensus        24 ~iNi~iiGHVD~GKSTL~~~Ll   45 (245)
T d1r5ba3          24 HVNIVFIGHVDAGKSTLGGNIL   45 (245)
T ss_dssp             EEEEEEEECGGGTHHHHHHHHH
T ss_pred             ceEEEEEeeCCCCHHHHHHHHH
Confidence            4679999999999999997763

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=90.49  E-value=0.047  Score=33.26  Aligned_cols=15  Identities=20%  Similarity=0.499  Sum_probs=13.0

Q ss_pred             EEEECCCCCcchhhh
Q psy1355          32 LVLLGESAVGKSSLV   46 (76)
Q Consensus        32 ivllG~~~vGKtsl~   46 (76)
                      ++|+|.+|+|||+.+
T Consensus        17 ~lI~g~aGTGKTt~l   31 (306)
T d1uaaa1          17 CLVLAGAGSGKTRVI   31 (306)
T ss_dssp             EEECCCTTSCHHHHH
T ss_pred             EEEEeeCCccHHHHH
Confidence            578899999999765

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=90.30  E-value=0.07  Score=33.31  Aligned_cols=21  Identities=24%  Similarity=0.507  Sum_probs=17.2

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -+.+.|++++|||+|+.+++.
T Consensus        56 itei~G~~gsGKTtl~l~~~~   76 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIA   76 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHH
Confidence            356789999999999987664

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.20  E-value=0.065  Score=31.96  Aligned_cols=19  Identities=37%  Similarity=0.508  Sum_probs=15.1

Q ss_pred             EEEECCCCCcchhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~   50 (76)
                      |++-|.-|+||||++..+.
T Consensus         6 I~ieG~dGsGKsT~~~~L~   24 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLV   24 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            6667999999999875543

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=89.98  E-value=0.095  Score=33.85  Aligned_cols=24  Identities=21%  Similarity=0.189  Sum_probs=20.1

Q ss_pred             ceeeEEEECCCCCcchhhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..++|+|=|.-|+||||+++.+..
T Consensus         5 ~~~rI~iEG~iGsGKSTl~~~L~~   28 (333)
T d1p6xa_           5 TIVRIYLDGVYGIGKSTTGRVMAS   28 (333)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHS
T ss_pred             ceEEEEEECCccCCHHHHHHHHHH
Confidence            468999999999999999965543

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.83  E-value=0.12  Score=31.66  Aligned_cols=18  Identities=33%  Similarity=0.538  Sum_probs=15.3

Q ss_pred             eeEEEECCCCCcchhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVL   47 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~   47 (76)
                      .-|+|.|+.|+||+.+.+
T Consensus        24 ~pvlI~Ge~GtGK~~~A~   41 (247)
T d1ny5a2          24 CPVLITGESGVGKEVVAR   41 (247)
T ss_dssp             SCEEEECSTTSSHHHHHH
T ss_pred             CCEEEECCCCcCHHHHHH
Confidence            447899999999998874

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.53  E-value=0.081  Score=31.39  Aligned_cols=20  Identities=40%  Similarity=0.564  Sum_probs=16.2

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      .|++=|.-|+||||+++.+.
T Consensus         4 ~IviEG~~GsGKST~~~~L~   23 (241)
T d2ocpa1           4 RLSIEGNIAVGKSTFVKLLT   23 (241)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            46677999999999996554

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=88.99  E-value=0.11  Score=33.41  Aligned_cols=23  Identities=22%  Similarity=0.434  Sum_probs=19.6

Q ss_pred             eeeEEEECCCCCcchhhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~~   51 (76)
                      .++|+|=|.-|+||||+++.+..
T Consensus         5 ~lrI~IEG~iGsGKSTl~~~L~~   27 (331)
T d1osna_           5 VLRIYLDGAYGIGKTTAAEEFLH   27 (331)
T ss_dssp             EEEEEEEESSSSCTTHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            57899999999999999976554

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=88.36  E-value=0.12  Score=33.36  Aligned_cols=22  Identities=18%  Similarity=0.330  Sum_probs=18.8

Q ss_pred             eeeEEEECCCCCcchhhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~~   50 (76)
                      .++|+|=|.-|+||||+++.+.
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La   25 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLV   25 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHT
T ss_pred             ceEEEEECCcCCCHHHHHHHHH
Confidence            5679999999999999996554

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.55  E-value=0.13  Score=30.61  Aligned_cols=20  Identities=15%  Similarity=0.217  Sum_probs=16.3

Q ss_pred             eEEEECCCCCcchhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~   50 (76)
                      -|++-|.-|+||||++..+.
T Consensus         5 ~I~iEG~DGsGKST~~~~L~   24 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILY   24 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHH
Confidence            37788999999999886544

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.40  E-value=0.14  Score=33.11  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=19.4

Q ss_pred             ceeeEEEECCCCCcchhhhhhhh
Q psy1355          28 CQYKLVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        28 ~~~kivllG~~~vGKtsl~~~~~   50 (76)
                      ....|.++|..+.|||||+-+++
T Consensus        16 ~IRNI~iiGhvd~GKTTL~d~Ll   38 (341)
T d1n0ua2          16 NVRNMSVIAHVDHGKSTLTDSLV   38 (341)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHH
T ss_pred             cCcEEEEEeCCCCcHHHHHHHHH
Confidence            34469999999999999998765

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=87.33  E-value=0.19  Score=29.73  Aligned_cols=22  Identities=18%  Similarity=0.147  Sum_probs=17.2

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      ..|.|.|.-|+||||....+..
T Consensus         2 ~iIgiTG~igSGKsTva~~l~e   23 (241)
T d1deka_           2 KLIFLSGVKRSGKDTTADFIMS   23 (241)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHH
Confidence            3467889999999999865533

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=86.74  E-value=0.16  Score=32.78  Aligned_cols=18  Identities=28%  Similarity=0.427  Sum_probs=14.7

Q ss_pred             eEEEECCCCCcchhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLR   48 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~   48 (76)
                      -.+|.|+.|+|||+++..
T Consensus       165 ~~vI~G~pGTGKTt~i~~  182 (359)
T d1w36d1         165 ISVISGGPGTGKTTTVAK  182 (359)
T ss_dssp             EEEEECCTTSTHHHHHHH
T ss_pred             eEEEEcCCCCCceehHHH
Confidence            467889999999988744

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=85.63  E-value=0.14  Score=32.48  Aligned_cols=22  Identities=18%  Similarity=0.484  Sum_probs=18.0

Q ss_pred             eeEEEECCCCCcchhhhhhhhh
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~   51 (76)
                      -|+.++|++|+|||+|+...+.
T Consensus        69 Qr~~If~~~g~GKt~ll~~~~~   90 (285)
T d2jdia3          69 QRELIIGDRQTGKTSIAIDTII   90 (285)
T ss_dssp             CBCEEEESTTSSHHHHHHHHHH
T ss_pred             CEEEeecCCCCChHHHHHHHHH
Confidence            5688999999999999865553

>d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.35  E-value=0.25  Score=30.87  Aligned_cols=21  Identities=24%  Similarity=0.449  Sum_probs=16.7

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -..+.|++++|||+|+.+.+.
T Consensus        62 i~e~~G~~~~GKT~l~l~~~~   82 (269)
T d1mo6a1          62 VIEIYGPESSGKTTVALHAVA   82 (269)
T ss_dssp             EEEEECSSSSSHHHHHHHHHH
T ss_pred             eEEEecCCCcHHHHHHHHHHH
Confidence            356789999999999876553

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=84.03  E-value=0.48  Score=25.50  Aligned_cols=19  Identities=26%  Similarity=0.149  Sum_probs=15.0

Q ss_pred             EEEECCCCCcchhhhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLRFV   50 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~~~   50 (76)
                      .+|.++.|+|||.++..++
T Consensus        11 ~ll~apTGsGKT~~~~~~~   29 (136)
T d1a1va1          11 AHLHAPTGSGKSTKVPAAY   29 (136)
T ss_dssp             EEEECCTTSCTTTHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHH
Confidence            4678999999998875544

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=83.72  E-value=0.29  Score=29.80  Aligned_cols=17  Identities=29%  Similarity=0.511  Sum_probs=15.2

Q ss_pred             EEEECCCCCcchhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLR   48 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~   48 (76)
                      ++|-|+...|||++++.
T Consensus        44 ~iiTGpN~~GKSt~lk~   60 (234)
T d1wb9a2          44 LIITGPNMGGKSTYMRQ   60 (234)
T ss_dssp             EEEECCTTSSHHHHHHH
T ss_pred             EEEeccCchhhHHHHHH
Confidence            67889999999999975

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=83.52  E-value=0.21  Score=31.44  Aligned_cols=23  Identities=13%  Similarity=0.382  Sum_probs=18.4

Q ss_pred             eeEEEECCCCCcchhhhhhhhhC
Q psy1355          30 YKLVLLGESAVGKSSLVLRFVRG   52 (76)
Q Consensus        30 ~kivllG~~~vGKtsl~~~~~~~   52 (76)
                      -|+.++|++|+|||+|+......
T Consensus        68 Qr~~Ifg~~g~GKt~l~~~~~~~   90 (276)
T d1fx0a3          68 QRELIIGDRQTGKTAVATDTILN   90 (276)
T ss_dssp             CBCBEEESSSSSHHHHHHHHHHT
T ss_pred             ceEeeccCCCCChHHHHHHHHhh
Confidence            46788999999999998765543

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=83.27  E-value=0.22  Score=30.23  Aligned_cols=21  Identities=33%  Similarity=0.485  Sum_probs=16.7

Q ss_pred             eeeEEEECCCCCcchhhhhhh
Q psy1355          29 QYKLVLLGESAVGKSSLVLRF   49 (76)
Q Consensus        29 ~~kivllG~~~vGKtsl~~~~   49 (76)
                      +-.+++.|++++|||.++..+
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl   73 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSF   73 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHH
Confidence            345889999999999887543

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=83.12  E-value=0.27  Score=30.63  Aligned_cols=21  Identities=29%  Similarity=0.409  Sum_probs=16.9

Q ss_pred             eEEEECCCCCcchhhhhhhhh
Q psy1355          31 KLVLLGESAVGKSSLVLRFVR   51 (76)
Q Consensus        31 kivllG~~~vGKtsl~~~~~~   51 (76)
                      -..+.|++++|||+|+.+++.
T Consensus        59 itei~G~~~sGKT~l~l~~~~   79 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVA   79 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHH
Confidence            355779999999999977664

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=82.01  E-value=0.38  Score=27.90  Aligned_cols=19  Identities=16%  Similarity=0.524  Sum_probs=13.9

Q ss_pred             EEEE-CCCCCcchhhhhhhh
Q psy1355          32 LVLL-GESAVGKSSLVLRFV   50 (76)
Q Consensus        32 ivll-G~~~vGKtsl~~~~~   50 (76)
                      |.+. +..||||||+...+.
T Consensus         5 Iav~~~kGGvGKTtia~nLA   24 (237)
T d1g3qa_           5 ISIVSGKGGTGKTTVTANLS   24 (237)
T ss_dssp             EEEECSSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCcHHHHHHHHH
Confidence            3455 688999999986544

>d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=81.47  E-value=0.39  Score=29.05  Aligned_cols=17  Identities=24%  Similarity=0.552  Sum_probs=15.3

Q ss_pred             EEEECCCCCcchhhhhh
Q psy1355          32 LVLLGESAVGKSSLVLR   48 (76)
Q Consensus        32 ivllG~~~vGKtsl~~~   48 (76)
                      ++|-|+...|||++++.
T Consensus        38 ~iiTGpN~~GKSt~lk~   54 (224)
T d1ewqa2          38 VLITGPNMAGKSTFLRQ   54 (224)
T ss_dssp             EEEESCSSSSHHHHHHH
T ss_pred             EEEECCCccccchhhhh
Confidence            78999999999999965

>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: PEP carboxykinase C-terminal domain
domain: Cytosolic phosphoenolpyruvate carboxykinase (GTP-hydrolyzing)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.94  E-value=0.24  Score=32.53  Aligned_cols=33  Identities=21%  Similarity=0.298  Sum_probs=20.9

Q ss_pred             EEEEC--CCCCcchhhhhhhhhCcCCCcCCCceeEEE
Q psy1355          32 LVLLG--ESAVGKSSLVLRFVRGQFHEYQESTIGGCG   66 (76)
Q Consensus        32 ivllG--~~~vGKtsl~~~~~~~~f~~~~~~tig~~~   66 (76)
                      ..+.|  +|+||||+|..  +.-.++.-...|||+|+
T Consensus        19 ~yvaaAFPSaCGKTnlAM--l~p~~pGwkv~~vGDDi   53 (363)
T d1khba1          19 KYLAAAFPSACGKTNLAM--MNPSLPGWKVECVGDDI   53 (363)
T ss_dssp             EEEEEECCTTSCHHHHHT--CCCCSTTCEEEEEESSC
T ss_pred             EEEEEecCccccchhHHH--hCCCCCCcEEEEecCce
Confidence            34444  89999999874  33344443345677774