Psyllid ID: psy13567


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
MKESSKYLTCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGKTTPDTSSVEIQHSLNPESDQTKFSAPAALHI
cccccccccEEEccEEEccccEEcccccccccEEccccEEEEEccccccccccccccEEEEcccccccccccccccEEccEEEccccEEccccccccEEEcccEEEEEEccccccccccccccEEEccccccccccEEcccEEEcccccEEEccccccccccccccccccccc
ccccccccEEEEccEEEccccEccccccccEEEEcccEEEEEcccccccccccccccEEEccccccccEEEccccEEEccEEEccccEccccccccEEEEcccEEEEEcccccccccccccccEEEcccccccccEEccccccccccccEEEEEccccccccccccccccccc
MKESSKYLTCMyggvqyeegmtvpteehclncsctrgslvchlricptlpdppprgclivhkaqkccpqlvcehgcmyggvqyeegmtvpteehclncsctrgslvchlricptlpdppprgclivhkaqkccpqlvcehgkttpdtssveiqhslnpesdqtkfsapaalhi
MKESSKYLTCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGKTTPDTSSVEIQhslnpesdqtkfsapaalhi
MKESSKYLTCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGKTTPDTSSVEIQHSLNPESDQTKFSAPAALHI
******YLTCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEH*********************************
*****KY**CMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGKTTP***************DQTKFSAPAALH*
MKESSKYLTCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEH*********************************
*****KYLTCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGKTTPDTSSVEIQH*******************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MKESSKYLTCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHGKTTPDTSSVEIQHSLNPESDQTKFSAPAALHI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query173 2.2.26 [Sep-21-2011]
Q9IBG7 2327 Kielin/chordin-like prote N/A N/A 0.664 0.049 0.311 3e-05
Q92832 810 Protein kinase C-binding no N/A 0.578 0.123 0.355 4e-05
Q6ZWJ8 1503 Kielin/chordin-like prote no N/A 0.554 0.063 0.321 0.0003
Q2VWQ2 810 Protein kinase C-binding yes N/A 0.462 0.098 0.333 0.0006
Q90ZD5 456 Chordin-like protein 1 OS no N/A 0.479 0.182 0.305 0.0006
Q3U492 1550 Kielin/chordin-like prote no N/A 0.647 0.072 0.312 0.0007
>sp|Q9IBG7|KCP_XENLA Kielin/chordin-like protein OS=Xenopus laevis GN=kcp PE=2 SV=1 Back     alignment and function desciption
 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/135 (31%), Positives = 57/135 (42%), Gaps = 20/135 (14%)

Query: 5   SKYLTCMYGGVQYEEGMTV-PTEEHCLNCSCTRGSLVCHLRICPTL---PDPPPRGCLIV 60
           S+  +CM G V+ + G    P  + C +C C  G + C  R C  L   P PP  G    
Sbjct: 666 SQCQSCMDGTVKRKHGEEWKPQGDPCQSCRCLEGRVQCRKRHCAALCRNPLPPRPG---- 721

Query: 61  HKAQKCCPQLVCEHGCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPP 120
                CCP      GC+Y G  Y  G  V + + C  C C  G++ C    CP  P   P
Sbjct: 722 ----TCCPMC---DGCLYNGRSYLNGQPVRSTDQCNRCFCENGNVQCEPIACPQAPCRNP 774

Query: 121 RGCLIVHKAQKCCPQ 135
                V +  +CCP+
Sbjct: 775 -----VRRTGECCPR 784




May be a signaling molecule that mediates inductive activities of the embryonic midline. Able to dorsalize mesoderm.
Xenopus laevis (taxid: 8355)
>sp|Q92832|NELL1_HUMAN Protein kinase C-binding protein NELL1 OS=Homo sapiens GN=NELL1 PE=1 SV=4 Back     alignment and function description
>sp|Q6ZWJ8|KCP_HUMAN Kielin/chordin-like protein OS=Homo sapiens GN=KCP PE=2 SV=2 Back     alignment and function description
>sp|Q2VWQ2|NELL1_MOUSE Protein kinase C-binding protein NELL1 OS=Mus musculus GN=Nell1 PE=2 SV=1 Back     alignment and function description
>sp|Q90ZD5|CRDL1_CHICK Chordin-like protein 1 OS=Gallus gallus GN=CHRDL1 PE=2 SV=1 Back     alignment and function description
>sp|Q3U492|KCP_MOUSE Kielin/chordin-like protein OS=Mus musculus GN=Kcp PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query173
328721052 1119 PREDICTED: hypothetical protein LOC10016 0.826 0.127 0.347 7e-18
328721054 1024 PREDICTED: hypothetical protein LOC10016 0.479 0.081 0.505 7e-17
270013054 778 hypothetical protein TcasGA2_TC011603 [T 0.699 0.155 0.318 3e-16
91091404 810 PREDICTED: similar to AGAP009450-PA [Tri 0.699 0.149 0.318 3e-16
118777351 1333 AGAP009450-PA [Anopheles gambiae str. PE 0.381 0.049 0.545 1e-13
350411885 1034 PREDICTED: hypothetical protein LOC10074 0.913 0.152 0.293 2e-13
340711643 701 PREDICTED: hypothetical protein LOC10064 0.913 0.225 0.288 3e-13
345497753 1076 PREDICTED: hypothetical protein LOC10067 0.699 0.112 0.38 3e-13
195032270 1345 GH10559 [Drosophila grimshawi] gi|193904 0.369 0.047 0.515 6e-13
321459814 854 hypothetical protein DAPPUDRAFT_112303 [ 0.757 0.153 0.301 6e-13
>gi|328721052|ref|XP_003247201.1| PREDICTED: hypothetical protein LOC100164012 isoform 2 [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score = 95.5 bits (236), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 66/190 (34%), Positives = 84/190 (44%), Gaps = 47/190 (24%)

Query: 10  CMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQ 69
           C Y G  Y+ G  V T++ CL C+C  GSLVCHL+ICP LPDPPP+GC+IVHK  KCC  
Sbjct: 65  CNYKGRSYDPGSLVNTDQPCLKCTCVTGSLVCHLQICPELPDPPPQGCVIVHKKNKCCAH 124

Query: 70  LVCEH-----------------------------------GCMYGGVQYEEGMTVPTEEH 94
           L C +                                   GC+  G  Y EG  + +   
Sbjct: 125 LQCYYEQFDAVHSKLFSLQNRSGPARMDNSAIVTFDGLPKGCVINGTIYAEGSAMDSSSL 184

Query: 95  CLNCSCTRGSLVCHLRICP-TLPDPPPRGCLIVHKAQKCCP------QLVCEHGKTTPDT 147
           C  C C +G   C    C  T+P     GC  V+K   CCP       L     K T D 
Sbjct: 185 CEYCYCIKGHQQCVRPQCSLTIP-----GCTAVYKKHTCCPIRYKCSPLQNAQIKYTADV 239

Query: 148 SSVEIQHSLN 157
           ++ E+  SL+
Sbjct: 240 TTTEMASSLS 249




Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328721054|ref|XP_001948168.2| PREDICTED: hypothetical protein LOC100164012 isoform 1 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|270013054|gb|EFA09502.1| hypothetical protein TcasGA2_TC011603 [Tribolium castaneum] Back     alignment and taxonomy information
>gi|91091404|ref|XP_973867.1| PREDICTED: similar to AGAP009450-PA [Tribolium castaneum] Back     alignment and taxonomy information
>gi|118777351|ref|XP_560429.2| AGAP009450-PA [Anopheles gambiae str. PEST] gi|116132909|gb|EAL42050.2| AGAP009450-PA [Anopheles gambiae str. PEST] Back     alignment and taxonomy information
>gi|350411885|ref|XP_003489480.1| PREDICTED: hypothetical protein LOC100748848 [Bombus impatiens] Back     alignment and taxonomy information
>gi|340711643|ref|XP_003394382.1| PREDICTED: hypothetical protein LOC100644164 [Bombus terrestris] Back     alignment and taxonomy information
>gi|345497753|ref|XP_003428056.1| PREDICTED: hypothetical protein LOC100678122 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|195032270|ref|XP_001988468.1| GH10559 [Drosophila grimshawi] gi|193904468|gb|EDW03335.1| GH10559 [Drosophila grimshawi] Back     alignment and taxonomy information
>gi|321459814|gb|EFX70863.1| hypothetical protein DAPPUDRAFT_112303 [Daphnia pulex] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query173
RGD|1561119 1259 Kcp "kielin/chordin-like prote 0.572 0.078 0.330 2.9e-12
MGI|MGI:2141640 1550 Kcp "kielin/chordin-like prote 0.572 0.063 0.339 6e-12
UNIPROTKB|Q6ZWJ8 1503 KCP "Kielin/chordin-like prote 0.658 0.075 0.318 1.7e-11
UNIPROTKB|F5H6I3 753 NELL1 "Protein kinase C-bindin 0.578 0.132 0.355 2.3e-11
UNIPROTKB|Q92832 810 NELL1 "Protein kinase C-bindin 0.578 0.123 0.355 2.8e-11
UNIPROTKB|J3KNC5 838 NELL1 "Protein kinase C-bindin 0.578 0.119 0.355 3.1e-11
FB|FBgn0039257 2788 tnc "tenectin" [Drosophila mel 0.699 0.043 0.294 5.7e-11
UNIPROTKB|F1P9U6 3665 FRAS1 "Uncharacterized protein 0.728 0.034 0.303 7.3e-11
UNIPROTKB|J9NZY1 3690 FRAS1 "Uncharacterized protein 0.728 0.034 0.303 7.4e-11
UNIPROTKB|J9P6T8 4011 FRAS1 "Uncharacterized protein 0.728 0.031 0.303 8.1e-11
RGD|1561119 Kcp "kielin/chordin-like protein" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
 Score = 165 (63.1 bits), Expect = 2.9e-12, Sum P(2) = 2.9e-12
 Identities = 36/109 (33%), Positives = 52/109 (47%)

Query:    10 CMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQ 69
             C   G ++  G  V +++ C +C C  GS+ C    CP  P   P G +      +CCP 
Sbjct:   318 CFLNGREHSSGEPVGSQDPCSSCHCANGSVQCEPLPCPPAPCRYP-GRI----PGQCCP- 371

Query:    70 LVCEHGCMYGGVQY--EEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLP 116
              VC+ GC Y G +Y  +E  T+     CL C+C  G + C  + CP  P
Sbjct:   372 -VCD-GCKYQGHEYRSQETFTLQENGRCLRCTCQAGEVSCEEQDCPVTP 418


GO:0005615 "extracellular space" evidence=ISO
GO:0030513 "positive regulation of BMP signaling pathway" evidence=ISO
MGI|MGI:2141640 Kcp "kielin/chordin-like protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q6ZWJ8 KCP "Kielin/chordin-like protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F5H6I3 NELL1 "Protein kinase C-binding protein NELL1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q92832 NELL1 "Protein kinase C-binding protein NELL1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3KNC5 NELL1 "Protein kinase C-binding protein NELL1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
FB|FBgn0039257 tnc "tenectin" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1P9U6 FRAS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NZY1 FRAS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P6T8 FRAS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query173
1u5m_A73 Cartilage, alpha 1 type II collagen isoform 1; dis 99.41
1u5m_A73 Cartilage, alpha 1 type II collagen isoform 1; dis 99.41
3bk3_C67 Crossveinless 2, bone morphogenetic protein 2; TGF 98.99
3bk3_C67 Crossveinless 2, bone morphogenetic protein 2; TGF 98.95
2xtt_A36 Protease inhibitor SGPI-1; hydrolase, catalytic me 97.76
1wo9_A35 HI-1, trypsin inhibitor; hydrolase inhibitor; NMR 97.36
1o9a_A93 Fibronectin; cell adhesion/complex, HOST-pathogen 97.23
1gl0_I35 Protease inhibitor LCMI I; hydrolase/inhibitor, co 97.22
3ejh_A93 Fibronectin; fibronectin, protein complex, collage 97.21
2cg7_A90 Fibronectin; signaling protein, 2F13F1, acute phas 96.7
2rl0_A89 Fibronectin; 4F15F1, beta zipper, staphylococcus a 95.82
2xtt_A36 Protease inhibitor SGPI-1; hydrolase, catalytic me 95.59
3tvj_I38 Protease inhibitor SGPI-2; in vitro evolution, spe 95.46
1xhh_A91 Beta-microseminoprotein; beta srands, novel fold, 94.22
3ix0_A94 Beta-microseminoprotein; beta sheet, greek KEY mot 94.12
1wo9_A35 HI-1, trypsin inhibitor; hydrolase inhibitor; NMR 93.64
1gl0_I35 Protease inhibitor LCMI I; hydrolase/inhibitor, co 93.1
1xhh_A91 Beta-microseminoprotein; beta srands, novel fold, 92.35
3ix0_A94 Beta-microseminoprotein; beta sheet, greek KEY mot 92.04
3ejh_A93 Fibronectin; fibronectin, protein complex, collage 88.93
2cg7_A90 Fibronectin; signaling protein, 2F13F1, acute phas 88.33
2ec3_A68 Fibronectin; complement module, two disulfide bond 87.79
3m7p_A308 FN1 protein; fibronectin, extracellular matrix, mo 85.26
1o9a_A93 Fibronectin; cell adhesion/complex, HOST-pathogen 84.01
2ec3_A68 Fibronectin; complement module, two disulfide bond 83.23
3tvj_I38 Protease inhibitor SGPI-2; in vitro evolution, spe 81.53
>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2 Back     alignment and structure
Probab=99.41  E-value=5e-13  Score=87.99  Aligned_cols=62  Identities=24%  Similarity=0.544  Sum_probs=55.1

Q ss_pred             CCCCCCceeCCEEecCCCEEcCCCCCeeeEEcCCeEEeeccCCCCC-CCCCCCCCeeeccCCCCccCcc
Q psy13567          4 SSKYLTCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTL-PDPPPRGCLIVHKAQKCCPQLV   71 (173)
Q Consensus         4 ~~~~~~C~~~G~~y~~Ge~~~~~d~C~~C~C~~G~v~C~~~~Cp~~-~C~~~~~c~~~~~~g~CCp~c~   71 (173)
                      .....+|+|+|++|.+|++|.+ |+|..|+|.+|.|.|..+.|+.+ +|+++     ...+|+|||.|.
T Consensus         4 ~~~~~~C~~~G~~y~~ge~W~~-d~C~~C~C~~G~v~C~~~~Cp~~~~C~~p-----~~~~GeCCPvC~   66 (73)
T 1u5m_A            4 FQEAGSCVQDGQRYNDKDVWKP-EPCRICVCDTGTVLCDDIICEDVKDCLSP-----EIPFGECCPICP   66 (73)
T ss_dssp             CCCCSCEESSSCEECSSCEECS-CSSEEEEEETTEEEEEECCCSCCSSCSCC-----CCCSSCSCCSCC
T ss_pred             cccCCCeeECCEEEcCCCEECC-cCcCceECCCCcEEeccccCCCccCCCCC-----cccCCCcCCCCC
Confidence            3455799999999999999994 78999999999999999999998 89987     468999999853



>1u5m_A Cartilage, alpha 1 type II collagen isoform 1; disulfide bonds, two SUB-domain architecture, beta-sheet, structural protein; NMR {Homo sapiens} SCOP: g.27.1.2 Back     alignment and structure
>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio} Back     alignment and structure
>3bk3_C Crossveinless 2, bone morphogenetic protein 2; TGF-beta superfamily, BMP modulator proteins, chordin, BMP inhibitor, chondrogenesis; 2.70A {Danio rerio} Back     alignment and structure
>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A Back     alignment and structure
>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1 Back     alignment and structure
>1o9a_A Fibronectin; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1qgb_A Back     alignment and structure
>1gl0_I Protease inhibitor LCMI I; hydrolase/inhibitor, complex (protease/inhibitor), hydrolase, serine protease, serine protease inhibitor; 3.0A {Locusta migratoria} SCOP: g.4.1.1 Back     alignment and structure
>3ejh_A Fibronectin; fibronectin, protein complex, collagenase site, AC phase, cell adhesion, disease mutation; HET: NAG; 2.10A {Homo sapiens} PDB: 3gxe_B* Back     alignment and structure
>2cg7_A Fibronectin; signaling protein, 2F13F1, acute phase, alternative splicing, cell adhesion, glycoprotein, heparin-binding, phosphorylation; 1.2A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 2cg6_A 2cku_A 2rkz_A 3cal_A 3zrz_A Back     alignment and structure
>2rl0_A Fibronectin; 4F15F1, beta zipper, staphylococcus aureus, acute phase, alternative splicing, cell adhesion, extracellular matrix; 2.00A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1fbr_A 2rky_A Back     alignment and structure
>2xtt_A Protease inhibitor SGPI-1; hydrolase, catalytic mechanism, inhibition, in vitro evoluti; 0.93A {Schistocerca gregaria} PDB: 1kj0_A 2f91_B 2vu8_I 1kio_A Back     alignment and structure
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A Back     alignment and structure
>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic secretory protein, solution structure, Na+, K+ ATPase inhibitor, unknown function; NMR {Sus scrofa} PDB: 2iz4_A Back     alignment and structure
>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative splicing, disulfide bond, polymorphism, secreted, protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A Back     alignment and structure
>1wo9_A HI-1, trypsin inhibitor; hydrolase inhibitor; NMR {Synthetic} SCOP: g.4.1.1 Back     alignment and structure
>1gl0_I Protease inhibitor LCMI I; hydrolase/inhibitor, complex (protease/inhibitor), hydrolase, serine protease, serine protease inhibitor; 3.0A {Locusta migratoria} SCOP: g.4.1.1 Back     alignment and structure
>1xhh_A Beta-microseminoprotein; beta srands, novel fold, prostatic secretory protein, solution structure, Na+, K+ ATPase inhibitor, unknown function; NMR {Sus scrofa} PDB: 2iz4_A Back     alignment and structure
>3ix0_A Beta-microseminoprotein; beta sheet, greek KEY motif, alternative splicing, disulfide bond, polymorphism, secreted, protein binding; 2.30A {Homo sapiens} PDB: 2iz3_A Back     alignment and structure
>3ejh_A Fibronectin; fibronectin, protein complex, collagenase site, AC phase, cell adhesion, disease mutation; HET: NAG; 2.10A {Homo sapiens} PDB: 3gxe_B* Back     alignment and structure
>2cg7_A Fibronectin; signaling protein, 2F13F1, acute phase, alternative splicing, cell adhesion, glycoprotein, heparin-binding, phosphorylation; 1.2A {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 2cg6_A 2cku_A 2rkz_A 3cal_A 3zrz_A Back     alignment and structure
>2ec3_A Fibronectin; complement module, two disulfide bonds, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3m7p_A FN1 protein; fibronectin, extracellular matrix, modular protein, zinc BIN dimer, conformational change, cell adhesion; HET: NAG 12P; 2.50A {Homo sapiens} PDB: 3mql_A* 1e88_A* 1e8b_A* 1qo6_A 2fn2_A* Back     alignment and structure
>1o9a_A Fibronectin; cell adhesion/complex, HOST-pathogen protein complex, cell adhesion; NMR {Homo sapiens} SCOP: g.27.1.1 g.27.1.1 PDB: 1qgb_A Back     alignment and structure
>2ec3_A Fibronectin; complement module, two disulfide bonds, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3tvj_I Protease inhibitor SGPI-2; in vitro evolution, specific inhibitor, allostery, hydrolase; 1.28A {Schistocerca gregaria} PDB: 4djz_H 1kgm_A 1gl1_I 1pmc_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 173
d1u5ma_73 g.27.1.2 (A:) Collagen alpha 1(II) chain precursor 3e-04
d1u5ma_73 g.27.1.2 (A:) Collagen alpha 1(II) chain precursor 9e-04
>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure

class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: VWC domain
domain: Collagen alpha 1(II) chain precursor
species: Human (Homo sapiens) [TaxId: 9606]
 Score = 35.3 bits (81), Expect = 3e-04
 Identities = 16/61 (26%), Positives = 24/61 (39%), Gaps = 5/61 (8%)

Query: 75  GCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCP 134
            C+  G +Y +   V   E C  C C  G+++C   IC  + D             +CCP
Sbjct: 9   SCVQDGQRYNDK-DVWKPEPCRICVCDTGTVLCDDIICEDVKDCLS----PEIPFGECCP 63

Query: 135 Q 135
            
Sbjct: 64  I 64


>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]} Length = 73 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query173
d1u5ma_73 Collagen alpha 1(II) chain precursor {Human (Homo 99.47
d1u5ma_73 Collagen alpha 1(II) chain precursor {Human (Homo 99.4
d1o9aa144 Fibronectin {Human (Homo sapiens) [TaxId: 9606]} 96.17
d1gl0i_32 Protease inhibitor PMP-D2V {Migratory locust (Locu 95.03
d1o9aa144 Fibronectin {Human (Homo sapiens) [TaxId: 9606]} 94.97
d2cg7a143 Fibronectin {Human (Homo sapiens) [TaxId: 9606]} 93.69
d1gl1i_34 Protease inhibitor PMP-C {Migratory locust (Locust 92.71
d2cg7a143 Fibronectin {Human (Homo sapiens) [TaxId: 9606]} 91.98
d1e88a341 Fibronectin {Human (Homo sapiens) [TaxId: 9606]} 91.25
d1wo9a_35 Protease inhibitor SGTI {Desert locust (Schistocer 90.64
d1e88a341 Fibronectin {Human (Homo sapiens) [TaxId: 9606]} 87.16
d2rkya146 Fibronectin {Human (Homo sapiens) [TaxId: 9606]} 85.52
>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: FnI-like domain
superfamily: FnI-like domain
family: VWC domain
domain: Collagen alpha 1(II) chain precursor
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.47  E-value=4e-14  Score=91.72  Aligned_cols=61  Identities=26%  Similarity=0.641  Sum_probs=53.0

Q ss_pred             CCceeCCEEccCCceecCCCCCceeEeCCCeeeEeecCCCCCCCCCCCCCeeecCCCCCCCCCCcCCC
Q psy13567         74 HGCMYGGVQYEEGMTVPTEEHCLNCSCTRGSLVCHLRICPTLPDPPPRGCLIVHKAQKCCPQLVCEHG  141 (173)
Q Consensus        74 ~~C~~~g~~y~~Ge~~~~~d~C~~C~C~~G~~~C~~~~C~~~~C~~~~~c~~~~~~g~CCp~~~C~~~  141 (173)
                      .+|+|+|++|++|++|++ |+|++|+|.+|.+.|.++.|+++.+..    +++.++|+|||  .|..+
T Consensus         8 ~~C~~~g~~y~~Ge~w~~-d~C~~C~C~~G~v~C~~~~Cp~~~~c~----~~~~~~g~CCp--~C~~~   68 (73)
T d1u5ma_           8 GSCVQDGQRYNDKDVWKP-EPCRICVCDTGTVLCDDIICEDVKDCL----SPEIPFGECCP--ICPAD   68 (73)
T ss_dssp             SCEESSSCEECSSCEECS-CSSEEEEEETTEEEEEECCCSCCSSCS----CCCCCSSCSCC--SCCSS
T ss_pred             CCCeECCEEecCCCEECC-CCCeEeEecCCeEEEeeccCCCCCCCC----CceecCCCcCC--cCCCC
Confidence            579999999999999987 799999999999999999999876332    36778999999  68765



>d1u5ma_ g.27.1.2 (A:) Collagen alpha 1(II) chain precursor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1o9aa1 g.27.1.1 (A:17-60) Fibronectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gl0i_ g.4.1.1 (I:) Protease inhibitor PMP-D2V {Migratory locust (Locusta migratoria) [TaxId: 7004]} Back     information, alignment and structure
>d1o9aa1 g.27.1.1 (A:17-60) Fibronectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2cg7a1 g.27.1.1 (A:109-151) Fibronectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gl1i_ g.4.1.1 (I:) Protease inhibitor PMP-C {Migratory locust (Locusta migratoria) [TaxId: 7004]} Back     information, alignment and structure
>d2cg7a1 g.27.1.1 (A:109-151) Fibronectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1e88a3 g.27.1.1 (A:1-41) Fibronectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wo9a_ g.4.1.1 (A:) Protease inhibitor SGTI {Desert locust (Schistocerca gregaria) [TaxId: 7010]} Back     information, alignment and structure
>d1e88a3 g.27.1.1 (A:1-41) Fibronectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2rkya1 g.27.1.1 (A:152-197) Fibronectin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure