Psyllid ID: psy13593

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260----
Protein Sequence
MSHHHKHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMDKRTVDAIVKQVHRKEL
Secondary Structure (PSIPRED)
cccHHHHHHHHccccccHHHHHHHHHHHcHHHccccccccccccHHHHHHHHHccccHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccccccccccHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHccccccccHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHccccccHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHccccHHHHHHHHHHHccccccHHHcccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHcccHHHHHHHHHHHccHHccccHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mshhhkhltlvqgvprskrGEVWLFLAQQYckqnpmdtskfpnynvSYEQLLKQLTSHQHAILLDlgrtfpshpyyssplgpgqlSLFNVLKAyslldpevgycqgLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLdhypdlhahfdthevhptlyaapwlltlfssqfplgfVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMDKRTVDAIVKQVHRKEL
Flexible Loop (DISEMBL)
mshhhkhltlvqgvprskrGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMDKRTVDAIVKQVHRKEL
Low Complexity Region (SEG)
MSHHHKHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMDKRTVDAIVKQVHRKEL
Disordered region (IsUnstruct)
*********LVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMDKRTVDAIVK*******
Disordered Region (DISOPRED)
****HKH*TLVQGVPRSKRGEVWLFLAQQYC***********NYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMDKRTVDAIVKQVHRKEL
Disordered Region (DISEMBL)
**********VQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMDKRTVDAIVKQVHRKEL
Disordered Region (DISPRO)
*SHHHKHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMDKRTVDAIVKQVHRKEL
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSHHHKHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMDKRTVDAIVKQVHRKEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	264	2.2.26 [Sep-21-2011]
O97790	1165	TBC1 domain family member	yes	N/A	0.928	0.210	0.584	1e-85
Q60949	1255	TBC1 domain family member	no	N/A	0.954	0.200	0.581	3e-84
Q86TI0	1168	TBC1 domain family member	yes	N/A	0.928	0.209	0.576	5e-84
Q8BYJ6	1307	TBC1 domain family member	no	N/A	0.928	0.187	0.569	2e-83
O60343	1298	TBC1 domain family member	no	N/A	0.954	0.194	0.573	3e-83
Q5RCW6	815	Rab GTPase-activating pro	no	N/A	0.856	0.277	0.396	6e-44
Q5R372	815	Rab GTPase-activating pro	no	N/A	0.856	0.277	0.396	7e-44
A2AWA9	1064	Rab GTPase-activating pro	no	N/A	0.840	0.208	0.396	8e-44
Q5RAN1	1069	Rab GTPase-activating pro	no	N/A	0.840	0.207	0.396	9e-44
Q9Y3P9	1069	Rab GTPase-activating pro	no	N/A	0.840	0.207	0.396	1e-43

>sp|O97790|TBCD1_BOVIN TBC1 domain family member 1 OS=Bos taurus GN=TBC1D1 PE=2 SV=2

 Score =  316 bits (809), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 152/260 (58%), Positives = 194/260 (74%), Gaps = 15/260 (5%)

Query: 7    HLTLVQGVPRSKRGEVWLFLAQQY-------CKQNPMDTSKFPNYNVSYEQLLKQLTSHQ 59
            H  + QGVPR  RGE+W FLA+QY       CKQ P DT         Y++LLKQLTS Q
Sbjct: 791  HSAVGQGVPRHHRGEIWKFLAEQYHLKHPFPCKQQPKDTP--------YKELLKQLTSQQ 842

Query: 60   HAILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHS 119
            HAIL+DLGRTFP+HPYYS+ LG GQLSL+N+LKAYSLLD EVGYCQGLSFVAG+LLLH  
Sbjct: 843  HAILIDLGRTFPTHPYYSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMG 902

Query: 120  EEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLY 179
            EE+AF ML+ LMF  GLR+ Y PDM  LQ+Q+YQ SRLL D++ DL+ H + HE+ P+LY
Sbjct: 903  EEEAFNMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLY 962

Query: 180  AAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDY 239
            AAPW LT+F+SQFPLGFV RVFDM+ ++  E++F+V LSLLG H+  +L+ EN ETI+D+
Sbjct: 963  AAPWFLTVFASQFPLGFVARVFDMIFLQGSEVIFKVALSLLGSHKPLILQHENLETIVDF 1022

Query: 240  LKTNITVMDKRTVDAIVKQV 259
            +K+ +  +    ++  + QV
Sbjct: 1023 IKSTLPNLGLVQMEKTISQV 1042

May act as a GTPase-activating protein for Rab family protein(s). May play a role in the cell cycle and differentiation of various tissues. Involved in the trafficking and translocation of GLUT4-containing vesicles and insulin-stimulated glucose uptake into cells.
Bos taurus (taxid: 9913)

>sp|Q60949|TBCD1_MOUSE TBC1 domain family member 1 OS=Mus musculus GN=Tbc1d1 PE=1 SV=3

 Score =  311 bits (797), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 147/253 (58%), Positives = 196/253 (77%), Gaps = 1/253 (0%)

Query: 7    HLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDL 66
            H  + QGVPR  RGE+W FLA+Q+  ++P  + + P  +V Y++LLK+LTS QHAIL+DL
Sbjct: 881  HSAVGQGVPRHHRGEIWKFLAEQFHLKHPFPSKQQPK-DVPYKELLKKLTSQQHAILIDL 939

Query: 67   GRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMM 126
            GRTFP+HPY+S+ LG GQLSL+N+LKAYSLLD EVGYCQGLSFVAG+LLLH SEE+AF M
Sbjct: 940  GRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKM 999

Query: 127  LRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLT 186
            L+ LMF  GLR+ Y PDM  LQ+Q+YQ SRLL D++ DL+ H + HE+ P+LYAAPW LT
Sbjct: 1000 LKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLT 1059

Query: 187  LFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITV 246
            +F+SQFPLGFV RVFDM+ ++  E++F+V LSLLG H+  +L+ EN ETI+D++K  +  
Sbjct: 1060 VFASQFPLGFVARVFDMIFLQGSEVIFKVALSLLGSHKPLILQHENLETIVDFIKNTLPN 1119

Query: 247  MDKRTVDAIVKQV 259
            +    ++  + QV
Sbjct: 1120 LGLVQMEKTISQV 1132

May act as a GTPase-activating protein for Rab family protein(s). May play a role in the cell cycle and differentiation of various tissues. Involved in the trafficking and translocation of GLUT4-containing vesicles and insulin-stimulated glucose uptake into cells.

Mus musculus (taxid: 10090)

>sp|Q86TI0|TBCD1_HUMAN TBC1 domain family member 1 OS=Homo sapiens GN=TBC1D1 PE=1 SV=2

 Score =  310 bits (795), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 150/260 (57%), Positives = 194/260 (74%), Gaps = 15/260 (5%)

Query: 7    HLTLVQGVPRSKRGEVWLFLAQQY-------CKQNPMDTSKFPNYNVSYEQLLKQLTSHQ 59
            H  + QGVPR  RGE+W FLA+Q+        KQ P D        V Y++LLKQLTS Q
Sbjct: 794  HSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPKD--------VPYKELLKQLTSQQ 845

Query: 60   HAILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHS 119
            HAIL+DLGRTFP+HPY+S+ LG GQLSL+N+LKAYSLLD EVGYCQGLSFVAG+LLLH S
Sbjct: 846  HAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMS 905

Query: 120  EEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLY 179
            EE+AF ML+ LMF  GLR+ Y PDM  LQ+Q+YQ SRLL D++ DL+ H + HE+ P+LY
Sbjct: 906  EEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLY 965

Query: 180  AAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDY 239
            AAPW LT+F+SQFPLGFV RVFDM+ ++  E++F+V LSLLG H+  +L+ EN ETI+D+
Sbjct: 966  AAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDF 1025

Query: 240  LKTNITVMDKRTVDAIVKQV 259
            +K+ +  +    ++  + QV
Sbjct: 1026 IKSTLPNLGLVQMEKTINQV 1045

May act as a GTPase-activating protein for Rab family protein(s). May play a role in the cell cycle and differentiation of various tissues. Involved in the trafficking and translocation of GLUT4-containing vesicles and insulin-stimulated glucose uptake into cells.

Homo sapiens (taxid: 9606)

>sp|Q8BYJ6|TBCD4_MOUSE TBC1 domain family member 4 OS=Mus musculus GN=Tbc1d4 PE=1 SV=2

 Score =  308 bits (790), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 148/260 (56%), Positives = 194/260 (74%), Gaps = 15/260 (5%)

Query: 7    HLTLVQGVPRSKRGEVWLFLAQQY-------CKQNPMDTSKFPNYNVSYEQLLKQLTSHQ 59
            H +L +GVP+S+RGE+W FLA QY        K  P DTS        Y++LLKQLT+ Q
Sbjct: 921  HTSLKEGVPKSRRGEIWQFLALQYRLRHRLPNKHQPPDTS--------YKELLKQLTAQQ 972

Query: 60   HAILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHS 119
            HAIL+DLGRTFP+HPY+S  LG GQLSLFN+LKAYSLLD EVGYCQG+SFVAGVLLLH S
Sbjct: 973  HAILVDLGRTFPTHPYFSVQLGAGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMS 1032

Query: 120  EEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLY 179
            EEQAF ML+ LM+  G R+ Y PDM +LQ+Q+YQ SRLL D++ +L+ H + +E+ P+LY
Sbjct: 1033 EEQAFEMLKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRELYNHLEENEISPSLY 1092

Query: 180  AAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDY 239
            AAPW LTLF+SQFPLGFV RVFD++ ++  E++F+V LSLL      ++ CENFE I+++
Sbjct: 1093 AAPWFLTLFASQFPLGFVARVFDIIFLQGTEVIFKVALSLLSSQEALIMECENFENIVEF 1152

Query: 240  LKTNITVMDKRTVDAIVKQV 259
            LK+ +  M+   ++ I+ QV
Sbjct: 1153 LKSTLPDMNTTEMEKIITQV 1172

May act as a GTPase-activating protein for RAB2A, RAB8A, RAB10 and RAB14. Promotes insulin-induced glucose transporter SLC2A4/GLUT4 translocation at the plasma membrane, thus increasing glucose uptake.

Mus musculus (taxid: 10090)

>sp|O60343|TBCD4_HUMAN TBC1 domain family member 4 OS=Homo sapiens GN=TBC1D4 PE=1 SV=2

 Score =  308 bits (789), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 145/253 (57%), Positives = 195/253 (77%), Gaps = 1/253 (0%)

Query: 7    HLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDL 66
            H  L +GVP+S+RGE+W FLA QY  ++ +   + P  ++SY++LLKQLT+ QHAIL+DL
Sbjct: 912  HTLLKEGVPKSRRGEIWQFLALQYRLRHRLPNKQQPP-DISYKELLKQLTAQQHAILVDL 970

Query: 67   GRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMM 126
            GRTFP+HPY+S  LGPGQLSLFN+LKAYSLLD EVGYCQG+SFVAGVLLLH SEEQAF M
Sbjct: 971  GRTFPTHPYFSVQLGPGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEM 1030

Query: 127  LRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLT 186
            L+ LM+  G R+ Y PDM +LQ+Q+YQ SRLL D++ DL+ H + +E+ P+LYAAPW LT
Sbjct: 1031 LKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLT 1090

Query: 187  LFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITV 246
            LF+SQF LGFV RVFD++ ++  E++F+V LSLL      ++ CE+FE I+++LK  +  
Sbjct: 1091 LFASQFSLGFVARVFDIIFLQGTEVIFKVALSLLSSQETLIMECESFENIVEFLKNTLPD 1150

Query: 247  MDKRTVDAIVKQV 259
            M+   ++ I+ QV
Sbjct: 1151 MNTSEMEKIITQV 1163

May act as a GTPase-activating protein for RAB2A, RAB8A, RAB10 and RAB14. Isoform 2 promotes insulin-induced glucose transporter SLC2A4/GLUT4 translocation at the plasma membrane, thus increasing glucose uptake.

Homo sapiens (taxid: 9606)

>sp|Q5RCW6|RBG1L_PONAB Rab GTPase-activating protein 1-like OS=Pongo abelii GN=RABGAP1L PE=2 SV=1

 Score =  177 bits (449), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 94/237 (39%), Positives = 139/237 (58%), Gaps = 11/237 (4%)

Query: 9   TLVQ-GVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLG 67
           TLV+ GVP + R EVW  LA  +  Q  +D          Y  L+ + ++ +  I  D+ 
Sbjct: 533 TLVKSGVPEALRAEVWQLLAGCHDNQAMLDR---------YRILITKDSAQESVITRDIH 583

Query: 68  RTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMML 127
           RTFP+H Y+    G GQ SL+ + KAYS+ D ++GYCQG SF+A VLLLH  EEQAF +L
Sbjct: 584 RTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVL 643

Query: 128 RHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTL 187
             +M+  GLR  Y  +   L  + YQ  RL+ +  PDLH+HF    +   +YA+ W LTL
Sbjct: 644 VKIMYDYGLRDLYKNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTL 703

Query: 188 FSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNI 244
           F+++FPL  V  + D++L E   I+F V L+LL   +E+LL+  +FE  + + +  +
Sbjct: 704 FTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQA-DFEGALKFFRVQL 759

Pongo abelii (taxid: 9601)

>sp|Q5R372|RBG1L_HUMAN Rab GTPase-activating protein 1-like OS=Homo sapiens GN=RABGAP1L PE=1 SV=1

 Score =  177 bits (449), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 94/237 (39%), Positives = 139/237 (58%), Gaps = 11/237 (4%)

Query: 9   TLVQ-GVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLG 67
           TLV+ GVP + R EVW  LA  +  Q  +D          Y  L+ + ++ +  I  D+ 
Sbjct: 533 TLVKSGVPEALRAEVWQLLAGCHDNQAMLD---------RYRILITKDSAQESVITRDIH 583

Query: 68  RTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMML 127
           RTFP+H Y+    G GQ SL+ + KAYS+ D ++GYCQG SF+A VLLLH  EEQAF +L
Sbjct: 584 RTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVL 643

Query: 128 RHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTL 187
             +M+  GLR  Y  +   L  + YQ  RL+ +  PDLH+HF    +   +YA+ W LTL
Sbjct: 644 VKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTL 703

Query: 188 FSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNI 244
           F+++FPL  V  + D++L E   I+F V L+LL   +E+LL+  +FE  + + +  +
Sbjct: 704 FTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQA-DFEGALKFFRVQL 759

Homo sapiens (taxid: 9606)

>sp|A2AWA9|RBGP1_MOUSE Rab GTPase-activating protein 1 OS=Mus musculus GN=Rabgap1 PE=2 SV=1

 Score =  177 bits (449), Expect = 8e-44,   Method: Composition-based stats.
 Identities = 92/232 (39%), Positives = 133/232 (57%), Gaps = 10/232 (4%)

Query: 13  GVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPS 72
           GVP + RGEVW  LA   C  N     K       Y  L+ + +    AI  D+ RTFP+
Sbjct: 561 GVPEALRGEVWQLLAG--CHNNDHLVEK-------YRILITKESPQDSAITRDINRTFPA 611

Query: 73  HPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMF 132
           H Y+    G GQ SL+ + KAYS+ D E+GYCQG SF+A VLLLH  EEQAF +L  +MF
Sbjct: 612 HDYFKDTGGDGQDSLYKICKAYSVYDEEIGYCQGQSFLAAVLLLHMPEEQAFSVLVKIMF 671

Query: 133 RRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQF 192
             GLR+ +  +   L  + YQ  RL+ ++ PDL+ HF    +   +YA+ W LTLF+++F
Sbjct: 672 DYGLRELFKQNFEDLHCKFYQLERLMQEYIPDLYNHFLDISLEAHMYASQWFLTLFTAKF 731

Query: 193 PLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNI 244
           PL  V  + D++L E   ++F V L LL   +++LL   +FE  + + +  +
Sbjct: 732 PLYMVFHIIDLLLCEGISVIFNVALGLLKTSKDDLL-LTDFEGALKFFRVQL 782

May act as a GTPase-activating protein of RAB6A. May play a role in microtubule nucleation by centrosome. May participate in a RAB6A-mediated pathway involved in the metaphase-anaphase transition.

Mus musculus (taxid: 10090)

>sp|Q5RAN1|RBGP1_PONAB Rab GTPase-activating protein 1 OS=Pongo abelii GN=RABGAP1 PE=2 SV=1

 Score =  177 bits (448), Expect = 9e-44,   Method: Composition-based stats.
 Identities = 92/232 (39%), Positives = 133/232 (57%), Gaps = 10/232 (4%)

Query: 13  GVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPS 72
           GVP + RGEVW  LA   C  N     K       Y  L+ + +    AI  D+ RTFP+
Sbjct: 566 GVPEALRGEVWQLLAG--CHNNDHLVEK-------YRILITKESPQDSAITRDINRTFPA 616

Query: 73  HPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMF 132
           H Y+    G GQ SL+ + KAYS+ D E+GYCQG SF+A VLLLH  EEQAF +L  +MF
Sbjct: 617 HDYFKDTGGDGQDSLYKICKAYSVYDEEIGYCQGQSFLAAVLLLHMPEEQAFSVLVKIMF 676

Query: 133 RRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQF 192
             GLR+ +  +   L  + YQ  RL+ ++ PDL+ HF    +   +YA+ W LTLF+++F
Sbjct: 677 DYGLRELFKQNFEDLHCKFYQLERLMQEYIPDLYNHFLDISLEAHMYASQWFLTLFTAKF 736

Query: 193 PLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNI 244
           PL  V  + D++L E   ++F V L LL   +++LL   +FE  + + +  +
Sbjct: 737 PLYMVFHIIDLLLCEGISVIFNVALGLLKTSKDDLL-LTDFEGALKFFRVQL 787

May act as a GTPase-activating protein of RAB6A. May play a role in microtubule nucleation by centrosome. May participate in a RAB6A-mediated pathway involved in the metaphase-anaphase transition.

Pongo abelii (taxid: 9601)

>sp|Q9Y3P9|RBGP1_HUMAN Rab GTPase-activating protein 1 OS=Homo sapiens GN=RABGAP1 PE=1 SV=3

 Score =  177 bits (448), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 92/232 (39%), Positives = 133/232 (57%), Gaps = 10/232 (4%)

Query: 13  GVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPS 72
           GVP + RGEVW  LA   C  N     K       Y  L+ + +    AI  D+ RTFP+
Sbjct: 566 GVPEALRGEVWQLLAG--CHNNDHLVEK-------YRILITKESPQDSAITRDINRTFPA 616

Query: 73  HPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMF 132
           H Y+    G GQ SL+ + KAYS+ D E+GYCQG SF+A VLLLH  EEQAF +L  +MF
Sbjct: 617 HDYFKDTGGDGQDSLYKICKAYSVYDEEIGYCQGQSFLAAVLLLHMPEEQAFSVLVKIMF 676

Query: 133 RRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQF 192
             GLR+ +  +   L  + YQ  RL+ ++ PDL+ HF    +   +YA+ W LTLF+++F
Sbjct: 677 DYGLRELFKQNFEDLHCKFYQLERLMQEYIPDLYNHFLDISLEAHMYASQWFLTLFTAKF 736

Query: 193 PLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNI 244
           PL  V  + D++L E   ++F V L LL   +++LL   +FE  + + +  +
Sbjct: 737 PLYMVFHIIDLLLCEGISVIFNVALGLLKTSKDDLL-LTDFEGALKFFRVQL 787

May act as a GTPase-activating protein of RAB6A. May play a role in microtubule nucleation by centrosome. May participate in a RAB6A-mediated pathway involved in the metaphase-anaphase transition.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
307178813	1253	TBC1 domain family member 1 [Camponotus	0.950	0.200	0.718	1e-107
332030166	1290	TBC1 domain family member 1 [Acromyrmex	0.950	0.194	0.710	1e-105
322786967	1241	hypothetical protein SINV_02999 [Solenop	0.950	0.202	0.710	1e-105
345492083	1261	PREDICTED: TBC1 domain family member 4-l	0.950	0.199	0.706	1e-104
345492081	1299	PREDICTED: TBC1 domain family member 4-l	0.950	0.193	0.706	1e-104
380030221	1284	PREDICTED: TBC1 domain family member 4-l	0.950	0.195	0.694	1e-103
328779707	1247	PREDICTED: TBC1 domain family member 4 i	0.946	0.200	0.697	1e-103
193591977	1218	PREDICTED: TBC1 domain family member 4-l	0.958	0.207	0.667	1e-103
383861330	1248	PREDICTED: TBC1 domain family member 4-l	0.950	0.201	0.698	1e-103
328779705	1285	PREDICTED: TBC1 domain family member 4 i	0.950	0.195	0.694	1e-103

>gi|307178813|gb|EFN67394.1| TBC1 domain family member 1 [Camponotus floridanus]

 Score =  393 bits (1009), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 181/252 (71%), Positives = 218/252 (86%), Gaps = 1/252 (0%)

Query: 9   TLVQGVPRSKRGEVWLFLAQQYC-KQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLG 67
            + QGVP+ KRGEVW FLA+Q+C KQ P+DT  FPNYN SYE LLKQLTS QHAIL+DLG
Sbjct: 641 AIKQGVPKGKRGEVWQFLAEQFCLKQPPIDTQDFPNYNTSYELLLKQLTSQQHAILIDLG 700

Query: 68  RTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMML 127
           RTFPSHPY+SSPLGPGQL+LFN+LKAYSLLD EVGYCQGLSFVAGVLLLH +E+QAF +L
Sbjct: 701 RTFPSHPYFSSPLGPGQLALFNLLKAYSLLDHEVGYCQGLSFVAGVLLLHMAEDQAFFLL 760

Query: 128 RHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTL 187
           RHLMFRRGLR+ YLPDMAALQ+ LYQ SRLL D  P +++HFD HEV PTLYAAPWLLTL
Sbjct: 761 RHLMFRRGLRKLYLPDMAALQLHLYQLSRLLHDRLPAIYSHFDKHEVSPTLYAAPWLLTL 820

Query: 188 FSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVM 247
           F+SQFPLGFVTRVFD++ +EN E++FRV ++LL +H++ LL C+NFE IM+YLKT +  +
Sbjct: 821 FASQFPLGFVTRVFDLLFLENSEVLFRVSVALLEEHQDQLLCCDNFEEIMEYLKTRVPAV 880

Query: 248 DKRTVDAIVKQV 259
           DK+++D I+K+V
Sbjct: 881 DKQSLDRIMKRV 892

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332030166|gb|EGI69960.1| TBC1 domain family member 1 [Acromyrmex echinatior]

 Score =  388 bits (997), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/252 (71%), Positives = 217/252 (86%), Gaps = 1/252 (0%)

Query: 9   TLVQGVPRSKRGEVWLFLAQQYC-KQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLG 67
            + QGVP+ KRGEVW FLA+Q+C KQ P+DT +FPNYN  YE LLKQLTS QHAIL+DLG
Sbjct: 683 AIKQGVPKGKRGEVWQFLAEQFCLKQPPIDTQEFPNYNTPYELLLKQLTSQQHAILIDLG 742

Query: 68  RTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMML 127
           RTFPSHPY+SSPLGPGQL+LFN+LKAYSLLD EVGYCQGLSFVAGVLLLH +E+QAF +L
Sbjct: 743 RTFPSHPYFSSPLGPGQLALFNLLKAYSLLDHEVGYCQGLSFVAGVLLLHMAEDQAFFLL 802

Query: 128 RHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTL 187
           RHLMFRRGLR+ YLPDMAALQ+ LYQ SRLL D  P ++ HFD HEV PTLYAAPWLLTL
Sbjct: 803 RHLMFRRGLRKLYLPDMAALQLHLYQLSRLLHDRLPSIYNHFDKHEVSPTLYAAPWLLTL 862

Query: 188 FSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVM 247
           FSSQFPLGFVTRVFD++ +E+ E++FRV ++LL +H++ LL C++FE IM+YLKT +  +
Sbjct: 863 FSSQFPLGFVTRVFDLLFLESSEVLFRVSVALLEEHQDQLLCCDSFEEIMEYLKTRVPAI 922

Query: 248 DKRTVDAIVKQV 259
           DK+++D I+K+V
Sbjct: 923 DKQSLDRIMKRV 934

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322786967|gb|EFZ13191.1| hypothetical protein SINV_02999 [Solenopsis invicta]

 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 179/252 (71%), Positives = 217/252 (86%), Gaps = 1/252 (0%)

Query: 9   TLVQGVPRSKRGEVWLFLAQQYC-KQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLG 67
            + QGVP+ KRGEVW FLA+Q+C KQ P+DT +FPNYN  YE LLKQLTS QHAIL+DLG
Sbjct: 643 AIKQGVPKGKRGEVWQFLAEQFCLKQPPIDTQEFPNYNTPYELLLKQLTSQQHAILIDLG 702

Query: 68  RTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMML 127
           RTFPSHPY+SSPLGPGQL+LFN+LKAYSLLD EVGYCQGLSFVAGVLLLH +E+QAF +L
Sbjct: 703 RTFPSHPYFSSPLGPGQLALFNLLKAYSLLDHEVGYCQGLSFVAGVLLLHMAEDQAFFLL 762

Query: 128 RHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTL 187
           RHLMFRRGLR+ YLPDMAALQ+ LYQ SRLL D  P ++ HFD HEV PTLYAAPWLLTL
Sbjct: 763 RHLMFRRGLRKLYLPDMAALQLHLYQLSRLLHDRLPAIYNHFDKHEVSPTLYAAPWLLTL 822

Query: 188 FSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVM 247
           FSSQFPLGFVTRVFD++ +E+ E++FRV ++LL +H++ LL C++FE IM+YLKT +  +
Sbjct: 823 FSSQFPLGFVTRVFDLLFLESSEVLFRVSVALLEEHQDQLLCCDSFEEIMEYLKTRVPAI 882

Query: 248 DKRTVDAIVKQV 259
           DK+++D I+K+V
Sbjct: 883 DKQSLDRIMKRV 894

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492083|ref|XP_001599903.2| PREDICTED: TBC1 domain family member 4-like isoform 1 [Nasonia vitripennis]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 178/252 (70%), Positives = 214/252 (84%), Gaps = 1/252 (0%)

Query: 9   TLVQGVPRSKRGEVWLFLAQQYC-KQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLG 67
            + QGVPR KRGEVW FLA+Q+C KQ P+D+  FPNYN  YE LLKQLTS QHAIL+DLG
Sbjct: 643 AIKQGVPRGKRGEVWQFLAEQFCMKQPPLDSRDFPNYNTPYELLLKQLTSQQHAILIDLG 702

Query: 68  RTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMML 127
           RTFP+HPY+SSPLGPGQL+LFN+LKAYSLLD EVGYCQGLSFVAGVLLLH SE+ AF +L
Sbjct: 703 RTFPNHPYFSSPLGPGQLALFNLLKAYSLLDHEVGYCQGLSFVAGVLLLHMSEDLAFFLL 762

Query: 128 RHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTL 187
           RHLMFRRGLR+ YLPDMAALQ+ LYQ SRLL D  P ++ HFD HEV PTLYAAPWLLTL
Sbjct: 763 RHLMFRRGLRKLYLPDMAALQLHLYQLSRLLHDRLPAIYNHFDKHEVSPTLYAAPWLLTL 822

Query: 188 FSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVM 247
           F+SQFPLGFVTRVFD++ +E+ E++FRV L+LL +H++ LL C++FE IM+YLKT +  +
Sbjct: 823 FASQFPLGFVTRVFDLLFLESSEVIFRVALALLEEHQDQLLCCDSFEEIMEYLKTKVPAV 882

Query: 248 DKRTVDAIVKQV 259
           DK T+D ++K+V
Sbjct: 883 DKVTLDRVMKRV 894

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345492081|ref|XP_003426769.1| PREDICTED: TBC1 domain family member 4-like isoform 2 [Nasonia vitripennis]

 Score =  383 bits (984), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 178/252 (70%), Positives = 214/252 (84%), Gaps = 1/252 (0%)

Query: 9   TLVQGVPRSKRGEVWLFLAQQYC-KQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLG 67
            + QGVPR KRGEVW FLA+Q+C KQ P+D+  FPNYN  YE LLKQLTS QHAIL+DLG
Sbjct: 681 AIKQGVPRGKRGEVWQFLAEQFCMKQPPLDSRDFPNYNTPYELLLKQLTSQQHAILIDLG 740

Query: 68  RTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMML 127
           RTFP+HPY+SSPLGPGQL+LFN+LKAYSLLD EVGYCQGLSFVAGVLLLH SE+ AF +L
Sbjct: 741 RTFPNHPYFSSPLGPGQLALFNLLKAYSLLDHEVGYCQGLSFVAGVLLLHMSEDLAFFLL 800

Query: 128 RHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTL 187
           RHLMFRRGLR+ YLPDMAALQ+ LYQ SRLL D  P ++ HFD HEV PTLYAAPWLLTL
Sbjct: 801 RHLMFRRGLRKLYLPDMAALQLHLYQLSRLLHDRLPAIYNHFDKHEVSPTLYAAPWLLTL 860

Query: 188 FSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVM 247
           F+SQFPLGFVTRVFD++ +E+ E++FRV L+LL +H++ LL C++FE IM+YLKT +  +
Sbjct: 861 FASQFPLGFVTRVFDLLFLESSEVIFRVALALLEEHQDQLLCCDSFEEIMEYLKTKVPAV 920

Query: 248 DKRTVDAIVKQV 259
           DK T+D ++K+V
Sbjct: 921 DKVTLDRVMKRV 932

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380030221|ref|XP_003698752.1| PREDICTED: TBC1 domain family member 4-like [Apis florea]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/252 (69%), Positives = 215/252 (85%), Gaps = 1/252 (0%)

Query: 9   TLVQGVPRSKRGEVWLFLAQQYC-KQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLG 67
            + QGVP+ KRGEVW FLA+Q+C KQ P+DT  FPNYN  Y+ LLKQLTS QHAIL+DLG
Sbjct: 671 AIKQGVPKGKRGEVWQFLAEQFCLKQPPIDTRDFPNYNTPYDLLLKQLTSQQHAILIDLG 730

Query: 68  RTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMML 127
           RTFP+HPY+SSPLGPGQL+LFN+LKAYSLLD EVGYCQGLSFVAGVLLLH SE+QAF +L
Sbjct: 731 RTFPNHPYFSSPLGPGQLALFNLLKAYSLLDHEVGYCQGLSFVAGVLLLHMSEDQAFFLL 790

Query: 128 RHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTL 187
           RHLMFRRGLR+ YLPDMAALQ+ LYQ SRLL D    ++ HFD HEV PTLYAAPWLLTL
Sbjct: 791 RHLMFRRGLRKLYLPDMAALQLYLYQLSRLLHDRLAPIYNHFDKHEVSPTLYAAPWLLTL 850

Query: 188 FSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVM 247
           F+SQFPLGFVTRVFD++ +E+ E++FRV ++LL +H++ LL+C++FE IM+YLKT ++ +
Sbjct: 851 FASQFPLGFVTRVFDLLFLESTEVLFRVSMALLQEHQDQLLKCDSFEEIMEYLKTRVSAV 910

Query: 248 DKRTVDAIVKQV 259
           DK  +D ++K+V
Sbjct: 911 DKEILDRVMKRV 922

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779707|ref|XP_003249695.1| PREDICTED: TBC1 domain family member 4 isoform 1 [Apis mellifera]

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/251 (69%), Positives = 215/251 (85%), Gaps = 1/251 (0%)

Query: 10  LVQGVPRSKRGEVWLFLAQQYC-KQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGR 68
           + QGVP+ KRGEVW FLA+Q+C KQ P+DT  FPNYN  Y+ LLKQLTS QHAIL+DLGR
Sbjct: 636 IKQGVPKGKRGEVWQFLAEQFCLKQPPIDTRDFPNYNTPYDLLLKQLTSQQHAILIDLGR 695

Query: 69  TFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLR 128
           TFP+HPY+SSPLGPGQL+LFN+LKAYSLLD EVGYCQGLSFVAGVLLLH SE+QAF +LR
Sbjct: 696 TFPNHPYFSSPLGPGQLALFNLLKAYSLLDHEVGYCQGLSFVAGVLLLHMSEDQAFFLLR 755

Query: 129 HLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLF 188
           HLMFRRGLR+ YLPDMAALQ+ LYQ SRLL D    ++ HFD HEV PTLYAAPWLLTLF
Sbjct: 756 HLMFRRGLRKLYLPDMAALQLYLYQLSRLLHDRLAPIYNHFDKHEVSPTLYAAPWLLTLF 815

Query: 189 SSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMD 248
           +SQFPLGFVTRVFD++ +E+ E++FRV ++LL +H++ LL+C++FE IM+YLKT ++ +D
Sbjct: 816 ASQFPLGFVTRVFDLLFLESTEVLFRVSMALLQEHQDQLLKCDSFEEIMEYLKTRVSAVD 875

Query: 249 KRTVDAIVKQV 259
           K  +D ++K+V
Sbjct: 876 KDILDRVMKRV 886

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193591977|ref|XP_001947975.1| PREDICTED: TBC1 domain family member 4-like [Acyrthosiphon pisum]

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 171/256 (66%), Positives = 213/256 (83%), Gaps = 3/256 (1%)

Query: 12  QGVPRSKRGEVWLFLAQQYCKQ---NPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGR 68
           QGVPRSKRG+VW+F A+ YC     +P+D  KFPN+NV YEQLLKQLT +QHAIL+DLGR
Sbjct: 699 QGVPRSKRGDVWIFFAELYCNTTAPSPIDLEKFPNFNVPYEQLLKQLTKYQHAILIDLGR 758

Query: 69  TFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLR 128
           TFP+H Y+ SP GPGQL+L+N+LKAYSLLDPEVGYCQGL FVAGVLLLH SEEQAFMML+
Sbjct: 759 TFPNHTYFMSPFGPGQLALYNLLKAYSLLDPEVGYCQGLCFVAGVLLLHMSEEQAFMMLK 818

Query: 129 HLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLF 188
           HLMFRR LR+ YLPDMAALQVQLYQ SRLL DH+PDL+AHFD  ++ PTLYAAPW LT+F
Sbjct: 819 HLMFRRSLRKQYLPDMAALQVQLYQLSRLLHDHHPDLYAHFDNCDIPPTLYAAPWFLTMF 878

Query: 189 SSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMD 248
           +SQFPLGFV R+FD++  EN +++FR++LSLL  H++NLL C+  E IM+++K ++ V++
Sbjct: 879 ASQFPLGFVARIFDILFFENIDVLFRIILSLLTYHKDNLLACDGMEQIMNFIKNDLPVVN 938

Query: 249 KRTVDAIVKQVHRKEL 264
              +D I+KQV   +L
Sbjct: 939 NEIIDKIIKQVFTTDL 954

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861330|ref|XP_003706139.1| PREDICTED: TBC1 domain family member 4-like isoform 2 [Megachile rotundata]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 176/252 (69%), Positives = 213/252 (84%), Gaps = 1/252 (0%)

Query: 9   TLVQGVPRSKRGEVWLFLAQQYC-KQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLG 67
            + QGVP+ KRGEVW FLA+Q+C KQ P+DT  FPNYN  YE LLKQLTS QHAIL+DLG
Sbjct: 636 AIKQGVPKGKRGEVWQFLAEQFCLKQPPIDTRDFPNYNTPYELLLKQLTSQQHAILIDLG 695

Query: 68  RTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMML 127
           RTFP+HPY+SSPLGPGQL+LFN+LKAYSLLD EVGYCQGLSFVAGVLLLH SE+QAF +L
Sbjct: 696 RTFPNHPYFSSPLGPGQLALFNLLKAYSLLDHEVGYCQGLSFVAGVLLLHMSEDQAFFLL 755

Query: 128 RHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTL 187
           RHLMFRRGLR+ YLPDMAALQ+ LYQ SRLL D  P ++ HFD  EV PTLYAAPWLLTL
Sbjct: 756 RHLMFRRGLRKLYLPDMAALQLYLYQLSRLLHDRLPAIYNHFDKQEVSPTLYAAPWLLTL 815

Query: 188 FSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVM 247
           F+SQFPLGFVTRVFD++ +E+ E++FRV ++LL +H++ LL C++FE IM+YLKT +  +
Sbjct: 816 FASQFPLGFVTRVFDLLFLESTEVLFRVSMALLEEHQDQLLTCDSFEEIMEYLKTRVPAV 875

Query: 248 DKRTVDAIVKQV 259
           DK  +D ++K+V
Sbjct: 876 DKEVLDRVMKRV 887

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779705|ref|XP_392862.3| PREDICTED: TBC1 domain family member 4 isoform 2 [Apis mellifera]

 Score =  381 bits (978), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 175/252 (69%), Positives = 215/252 (85%), Gaps = 1/252 (0%)

Query: 9   TLVQGVPRSKRGEVWLFLAQQYC-KQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLG 67
            + QGVP+ KRGEVW FLA+Q+C KQ P+DT  FPNYN  Y+ LLKQLTS QHAIL+DLG
Sbjct: 673 AIKQGVPKGKRGEVWQFLAEQFCLKQPPIDTRDFPNYNTPYDLLLKQLTSQQHAILIDLG 732

Query: 68  RTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMML 127
           RTFP+HPY+SSPLGPGQL+LFN+LKAYSLLD EVGYCQGLSFVAGVLLLH SE+QAF +L
Sbjct: 733 RTFPNHPYFSSPLGPGQLALFNLLKAYSLLDHEVGYCQGLSFVAGVLLLHMSEDQAFFLL 792

Query: 128 RHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTL 187
           RHLMFRRGLR+ YLPDMAALQ+ LYQ SRLL D    ++ HFD HEV PTLYAAPWLLTL
Sbjct: 793 RHLMFRRGLRKLYLPDMAALQLYLYQLSRLLHDRLAPIYNHFDKHEVSPTLYAAPWLLTL 852

Query: 188 FSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVM 247
           F+SQFPLGFVTRVFD++ +E+ E++FRV ++LL +H++ LL+C++FE IM+YLKT ++ +
Sbjct: 853 FASQFPLGFVTRVFDLLFLESTEVLFRVSMALLQEHQDQLLKCDSFEEIMEYLKTRVSAV 912

Query: 248 DKRTVDAIVKQV 259
           DK  +D ++K+V
Sbjct: 913 DKDILDRVMKRV 924

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	264
FB|FBgn0261261	1572	plx "pollux" [Drosophila melan	0.954	0.160	0.584	6.2e-81
UNIPROTKB|J9P2G9	1082	TBC1D4 "Uncharacterized protei	0.973	0.237	0.569	3.7e-80
UNIPROTKB|J9PA28	933	TBC1D4 "Uncharacterized protei	0.973	0.275	0.569	3.7e-80
UNIPROTKB|F1PGW1	1139	TBC1D4 "Uncharacterized protei	0.973	0.225	0.569	5.2e-80
UNIPROTKB|O97790	1165	TBC1D1 "TBC1 domain family mem	0.973	0.220	0.573	3e-79
UNIPROTKB|H0Y8P0	856	TBC1D1 "TBC1 domain family mem	0.973	0.300	0.569	3.3e-79
UNIPROTKB|Q86TI0	1168	TBC1D1 "TBC1 domain family mem	0.973	0.220	0.569	8.7e-79
MGI|MGI:1889508	1255	Tbc1d1 "TBC1 domain family, me	0.973	0.204	0.569	1e-78
UNIPROTKB|F1S4K5	485	LOC100524447 "Uncharacterized	0.973	0.529	0.569	1.1e-78
UNIPROTKB|D4A4U9	1162	Tbc1d1 "Protein Tbc1d1" [Rattu	0.973	0.221	0.565	2.3e-78

FB|FBgn0261261 plx "pollux" [Drosophila melanogaster (taxid:7227)]

 Score = 823 (294.8 bits), Expect = 6.2e-81, P = 6.2e-81
 Identities = 148/253 (58%), Positives = 192/253 (75%)

Query:    13 GVPRSKRGEVWLFLAQQYCKQN-PMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFP 71
             GVPRSKRG+VW FLA+Q+     P+DT +FPN+N  Y  LLK LT HQHAI +DLGRTFP
Sbjct:   936 GVPRSKRGDVWTFLAEQHSMNTAPVDTKRFPNFNTPYHMLLKHLTEHQHAIFIDLGRTFP 995

Query:    72 SHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLM 131
             +H +Y  PLG GQLSLFN+LKAYS+LDPE+GYCQGL F+ GVLLLH  E  +F +L+HLM
Sbjct:   996 NHQFYKDPLGLGQLSLFNLLKAYSILDPELGYCQGLGFICGVLLLHCDEANSFQLLKHLM 1055

Query:   132 FRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQ 191
             FRR +R  YLPDM   Q+QLYQ SRL+ DH PDL+   D ++V PTLYAAPW+LT+FSSQ
Sbjct:  1056 FRRNMRTKYLPDMKKFQLQLYQLSRLVKDHLPDLYVWLDQNDVSPTLYAAPWILTVFSSQ 1115

Query:   192 FPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMDKRT 251
             FPLGFV RVFD++ +E+ +++F+  ++LL  H++ LL  +NFE IMDYLKT +  M+   
Sbjct:  1116 FPLGFVARVFDLLFLESSDVIFKFAIALLSVHKQQLLAKDNFEEIMDYLKTVVPKMEHTC 1175

Query:   252 VDAIVKQVHRKEL 264
             ++ I+K V   ++
Sbjct:  1176 MEQIMKLVFSMDI 1188

GO:0033627 "cell adhesion mediated by integrin" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0005178 "integrin binding" evidence=IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

UNIPROTKB|J9P2G9 TBC1D4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 147/258 (56%), Positives = 203/258 (78%)

Query:     7 HLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDL 66
             H++L +GVP+S+RGE+W FLA QY  ++ +   + P  ++SY++LLKQLT+ QHAIL+DL
Sbjct:   696 HISLKEGVPKSRRGEIWQFLALQYRLRHRLPNKQQPP-DISYKELLKQLTAQQHAILVDL 754

Query:    67 GRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMM 126
             GRTFP+HPY+S+ LG GQLSLFN+LKAYSLLD EVGYCQG+SFVAGVLLLH SEEQAF M
Sbjct:   755 GRTFPTHPYFSAQLGAGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEM 814

Query:   127 LRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLT 186
             L+ LM+ +G R+ Y PDM +LQ+Q+YQ SRLL D++ DL+ H + +E+ P+LYAAPW LT
Sbjct:   815 LKFLMYDQGFRKQYRPDMMSLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLT 874

Query:   187 LFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITV 246
             LF+SQFPLGFV RVFD++ ++  E++F+V LSLL      ++ CENFE+I+++LKT +  
Sbjct:   875 LFASQFPLGFVARVFDIIFLQGTEVIFKVALSLLSSQETLIMECENFESIVEFLKTTLPD 934

Query:   247 MDKRTVDAIVKQVHRKEL 264
             M+   ++ I+ QV   ++
Sbjct:   935 MNASEMEKIITQVFEMDI 952

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|J9PA28 TBC1D4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 805 (288.4 bits), Expect = 3.7e-80, P = 3.7e-80
 Identities = 147/258 (56%), Positives = 203/258 (78%)

Query:     7 HLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDL 66
             H++L +GVP+S+RGE+W FLA QY  ++ +   + P  ++SY++LLKQLT+ QHAIL+DL
Sbjct:   547 HISLKEGVPKSRRGEIWQFLALQYRLRHRLPNKQQPP-DISYKELLKQLTAQQHAILVDL 605

Query:    67 GRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMM 126
             GRTFP+HPY+S+ LG GQLSLFN+LKAYSLLD EVGYCQG+SFVAGVLLLH SEEQAF M
Sbjct:   606 GRTFPTHPYFSAQLGAGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEM 665

Query:   127 LRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLT 186
             L+ LM+ +G R+ Y PDM +LQ+Q+YQ SRLL D++ DL+ H + +E+ P+LYAAPW LT
Sbjct:   666 LKFLMYDQGFRKQYRPDMMSLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLT 725

Query:   187 LFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITV 246
             LF+SQFPLGFV RVFD++ ++  E++F+V LSLL      ++ CENFE+I+++LKT +  
Sbjct:   726 LFASQFPLGFVARVFDIIFLQGTEVIFKVALSLLSSQETLIMECENFESIVEFLKTTLPD 785

Query:   247 MDKRTVDAIVKQVHRKEL 264
             M+   ++ I+ QV   ++
Sbjct:   786 MNASEMEKIITQVFEMDI 803

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|F1PGW1 TBC1D4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 805 (288.4 bits), Expect = 5.2e-80, P = 5.2e-80
 Identities = 147/258 (56%), Positives = 203/258 (78%)

Query:     7 HLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDL 66
             H++L +GVP+S+RGE+W FLA QY  ++ +   + P  ++SY++LLKQLT+ QHAIL+DL
Sbjct:   753 HISLKEGVPKSRRGEIWQFLALQYRLRHRLPNKQQPP-DISYKELLKQLTAQQHAILVDL 811

Query:    67 GRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMM 126
             GRTFP+HPY+S+ LG GQLSLFN+LKAYSLLD EVGYCQG+SFVAGVLLLH SEEQAF M
Sbjct:   812 GRTFPTHPYFSAQLGAGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEM 871

Query:   127 LRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLT 186
             L+ LM+ +G R+ Y PDM +LQ+Q+YQ SRLL D++ DL+ H + +E+ P+LYAAPW LT
Sbjct:   872 LKFLMYDQGFRKQYRPDMMSLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLT 931

Query:   187 LFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITV 246
             LF+SQFPLGFV RVFD++ ++  E++F+V LSLL      ++ CENFE+I+++LKT +  
Sbjct:   932 LFASQFPLGFVARVFDIIFLQGTEVIFKVALSLLSSQETLIMECENFESIVEFLKTTLPD 991

Query:   247 MDKRTVDAIVKQVHRKEL 264
             M+   ++ I+ QV   ++
Sbjct:   992 MNASEMEKIITQVFEMDI 1009

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|O97790 TBC1D1 "TBC1 domain family member 1" [Bos taurus (taxid:9913)]

 Score = 800 (286.7 bits), Expect = 3.0e-79, P = 3.0e-79
 Identities = 148/258 (57%), Positives = 196/258 (75%)

Query:     7 HLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDL 66
             H  + QGVPR  RGE+W FLA+QY  ++P    + P  +  Y++LLKQLTS QHAIL+DL
Sbjct:   791 HSAVGQGVPRHHRGEIWKFLAEQYHLKHPFPCKQQPK-DTPYKELLKQLTSQQHAILIDL 849

Query:    67 GRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMM 126
             GRTFP+HPYYS+ LG GQLSL+N+LKAYSLLD EVGYCQGLSFVAG+LLLH  EE+AF M
Sbjct:   850 GRTFPTHPYYSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMGEEEAFNM 909

Query:   127 LRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLT 186
             L+ LMF  GLR+ Y PDM  LQ+Q+YQ SRLL D++ DL+ H + HE+ P+LYAAPW LT
Sbjct:   910 LKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLT 969

Query:   187 LFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITV 246
             +F+SQFPLGFV RVFDM+ ++  E++F+V LSLLG H+  +L+ EN ETI+D++K+ +  
Sbjct:   970 VFASQFPLGFVARVFDMIFLQGSEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN 1029

Query:   247 MDKRTVDAIVKQVHRKEL 264
             +    ++  + QV   ++
Sbjct:  1030 LGLVQMEKTISQVFETDI 1047

GO:0005634 "nucleus" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|H0Y8P0 TBC1D1 "TBC1 domain family member 1" [Homo sapiens (taxid:9606)]

 Score = 796 (285.3 bits), Expect = 3.3e-79, P = 3.3e-79
 Identities = 147/258 (56%), Positives = 198/258 (76%)

Query:     7 HLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDL 66
             H  + QGVPR  RGE+W FLA+Q+  ++   + + P  +V Y++LLKQLTS QHAIL+DL
Sbjct:   482 HSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPK-DVPYKELLKQLTSQQHAILIDL 540

Query:    67 GRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMM 126
             GRTFP+HPY+S+ LG GQLSL+N+LKAYSLLD EVGYCQGLSFVAG+LLLH SEE+AF M
Sbjct:   541 GRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKM 600

Query:   127 LRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLT 186
             L+ LMF  GLR+ Y PDM  LQ+Q+YQ SRLL D++ DL+ H + HE+ P+LYAAPW LT
Sbjct:   601 LKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLT 660

Query:   187 LFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITV 246
             +F+SQFPLGFV RVFDM+ ++  E++F+V LSLLG H+  +L+ EN ETI+D++K+ +  
Sbjct:   661 MFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN 720

Query:   247 MDKRTVDAIVKQVHRKEL 264
             +    ++  + QV   ++
Sbjct:   721 LGLVQMEKTINQVFEMDI 738

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q86TI0 TBC1D1 "TBC1 domain family member 1" [Homo sapiens (taxid:9606)]

 Score = 796 (285.3 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 147/258 (56%), Positives = 198/258 (76%)

Query:     7 HLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDL 66
             H  + QGVPR  RGE+W FLA+Q+  ++   + + P  +V Y++LLKQLTS QHAIL+DL
Sbjct:   794 HSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPK-DVPYKELLKQLTSQQHAILIDL 852

Query:    67 GRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMM 126
             GRTFP+HPY+S+ LG GQLSL+N+LKAYSLLD EVGYCQGLSFVAG+LLLH SEE+AF M
Sbjct:   853 GRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKM 912

Query:   127 LRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLT 186
             L+ LMF  GLR+ Y PDM  LQ+Q+YQ SRLL D++ DL+ H + HE+ P+LYAAPW LT
Sbjct:   913 LKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLT 972

Query:   187 LFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITV 246
             +F+SQFPLGFV RVFDM+ ++  E++F+V LSLLG H+  +L+ EN ETI+D++K+ +  
Sbjct:   973 MFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN 1032

Query:   247 MDKRTVDAIVKQVHRKEL 264
             +    ++  + QV   ++
Sbjct:  1033 LGLVQMEKTINQVFEMDI 1050

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1889508 Tbc1d1 "TBC1 domain family, member 1" [Mus musculus (taxid:10090)]

 Score = 798 (286.0 bits), Expect = 1.0e-78, P = 1.0e-78
 Identities = 147/258 (56%), Positives = 198/258 (76%)

Query:     7 HLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDL 66
             H  + QGVPR  RGE+W FLA+Q+  ++P  + + P  +V Y++LLK+LTS QHAIL+DL
Sbjct:   881 HSAVGQGVPRHHRGEIWKFLAEQFHLKHPFPSKQQPK-DVPYKELLKKLTSQQHAILIDL 939

Query:    67 GRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMM 126
             GRTFP+HPY+S+ LG GQLSL+N+LKAYSLLD EVGYCQGLSFVAG+LLLH SEE+AF M
Sbjct:   940 GRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKM 999

Query:   127 LRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLT 186
             L+ LMF  GLR+ Y PDM  LQ+Q+YQ SRLL D++ DL+ H + HE+ P+LYAAPW LT
Sbjct:  1000 LKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLT 1059

Query:   187 LFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITV 246
             +F+SQFPLGFV RVFDM+ ++  E++F+V LSLLG H+  +L+ EN ETI+D++K  +  
Sbjct:  1060 VFASQFPLGFVARVFDMIFLQGSEVIFKVALSLLGSHKPLILQHENLETIVDFIKNTLPN 1119

Query:   247 MDKRTVDAIVKQVHRKEL 264
             +    ++  + QV   ++
Sbjct:  1120 LGLVQMEKTISQVFEMDI 1137

GO:0005096 "GTPase activator activity" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0032313 "regulation of Rab GTPase activity" evidence=IEA

GO:0032880 "regulation of protein localization" evidence=ISO

UNIPROTKB|F1S4K5 LOC100524447 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 791 (283.5 bits), Expect = 1.1e-78, P = 1.1e-78
 Identities = 147/258 (56%), Positives = 196/258 (75%)

Query:     7 HLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDL 66
             H  + QGVPR  RGE+W FLA+QY  ++   + + P  +  Y++LLKQLTS QHAIL+DL
Sbjct:   111 HSAVGQGVPRHHRGEIWKFLAEQYHLKHQFPSKQQPK-DTPYKELLKQLTSQQHAILIDL 169

Query:    67 GRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMM 126
             GRTFP+HPY+S+ LG GQLSL+N+LKAYSLLD EVGYCQGLSFVAG+LLLH  EE+AF M
Sbjct:   170 GRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMGEEEAFNM 229

Query:   127 LRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLT 186
             L+ LMF  GLR+ Y PDM  LQVQ+YQ SRLL D++ DL+ H + HE+ P+LYAAPW LT
Sbjct:   230 LKFLMFDMGLRKQYRPDMIILQVQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLT 289

Query:   187 LFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITV 246
             +F+SQFPLGFV RVFDM+ ++  E++F+V LSLLG H+  +L+ EN ETI+D++K+ +  
Sbjct:   290 VFASQFPLGFVARVFDMIFLQGSEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN 349

Query:   247 MDKRTVDAIVKQVHRKEL 264
             +    ++  + QV   ++
Sbjct:   350 LGLVQMEKTISQVFEMDI 367

GO:0005622 "intracellular" evidence=IEA

GO:0005097 "Rab GTPase activator activity" evidence=IEA

UNIPROTKB|D4A4U9 Tbc1d1 "Protein Tbc1d1" [Rattus norvegicus (taxid:10116)]

 Score = 792 (283.9 bits), Expect = 2.3e-78, P = 2.3e-78
 Identities = 146/258 (56%), Positives = 198/258 (76%)

Query:     7 HLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDL 66
             H  + QGVPR  RGE+W FLA+Q+  ++P  + + P  +V Y++LLK+LTS QHAIL+DL
Sbjct:   788 HSAVGQGVPRHHRGEIWKFLAEQFHLKHPFPSKQQPK-DVPYKELLKKLTSQQHAILIDL 846

Query:    67 GRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMM 126
             GRTFP+HPY+S+ LG GQLSL+N+LKAYSLLD EVGYCQGLSFVAG+LLLH SEE+AF M
Sbjct:   847 GRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKM 906

Query:   127 LRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLT 186
             L+ LMF  GLR+ Y PDM  LQ+Q+YQ SRLL D++ DL+ H + +E+ P+LYAAPW LT
Sbjct:   907 LKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEYEIGPSLYAAPWFLT 966

Query:   187 LFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITV 246
             +F+SQFPLGFV RVFDM+ ++  E++F+V LSLLG H+  +L+ EN ETI+D++K  +  
Sbjct:   967 VFASQFPLGFVARVFDMIFLQGSEVIFKVALSLLGSHKPLILQHENLETIVDFIKNTLPN 1026

Query:   247 MDKRTVDAIVKQVHRKEL 264
             +    ++  + QV   ++
Sbjct:  1027 LGLVQMEKTISQVFEMDI 1044

GO:0005097 "Rab GTPase activator activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q86TI0	TBCD1_HUMAN	No assigned EC number	0.5769	0.9280	0.2097	yes	N/A
O97790	TBCD1_BOVIN	No assigned EC number	0.5846	0.9280	0.2103	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	264
smart00164	216	smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16	4e-68
pfam00566	206	pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain	6e-57
COG5210	496	COG5210, COG5210, GTPase-activating protein [Gener	1e-45

>gnl|CDD|214540 smart00164, TBC, Domain in Tre-2, BUB2p, and Cdc16p

 Score =  209 bits (534), Expect = 4e-68
 Identities = 102/222 (45%), Positives = 131/222 (59%), Gaps = 13/222 (5%)

Query: 12  QGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQ----LTSHQHAILLDLG 67
           +GVP S RG VW  L        PMDTS   +    Y +LLK+      S  H I  DL 
Sbjct: 3   KGVPPSLRGVVWKLLLNAQ----PMDTSADKDL---YSRLLKETAPDDKSIVHQIEKDLR 55

Query: 68  RTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLH-HSEEQAFMM 126
           RTFP H ++    GPGQ SL  VLKAY+L +PEVGYCQG++F+A  LLL    EE AF  
Sbjct: 56  RTFPEHSFFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAAPLLLVMEDEEDAFWC 115

Query: 127 LRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLT 186
           L  LM R G    YLPDM+ LQ+ L Q  RL+ ++ PDL+ H     + P+LYA  W LT
Sbjct: 116 LVKLMERYGPN-FYLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDLGITPSLYALRWFLT 174

Query: 187 LFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLL 228
           LF+ + PL  V R++D++  E  + +FRV L+LL  HR+ LL
Sbjct: 175 LFARELPLEIVLRIWDVLFAEGSDFLFRVALALLKLHRDVLL 216

Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases. Length = 216

>gnl|CDD|215997 pfam00566, RabGAP-TBC, Rab-GTPase-TBC domain

 Score =  180 bits (459), Expect = 6e-57
 Identities = 78/213 (36%), Positives = 116/213 (54%), Gaps = 9/213 (4%)

Query: 17  SKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYY 76
           S RGEVW  L     +       +  + +   + L  + +  +  I  D+ RTFP H ++
Sbjct: 2   SLRGEVWKLLLGNLSESK-----QRDSVSQYSKLLKLEDSPDEEQIEKDVPRTFPHHFFF 56

Query: 77  SSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHH-SEEQAFMMLRHLMFRRG 135
            +  G GQ  L  +LKAYS+ +P+VGYCQG++F+A  LLL    EE+AF     L+    
Sbjct: 57  KN--GEGQQQLRRILKAYSIYNPDVGYCQGMNFIAAPLLLVVLDEEEAFWCFVSLLEY-L 113

Query: 136 LRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLG 195
           LR  +LP    LQ  LY F  LL  H P+L+ H     + P+L+A+ W LTLF+ + PL 
Sbjct: 114 LRDFFLPSFPGLQRDLYVFEELLKKHDPELYKHLQKLGLDPSLFASKWFLTLFARELPLE 173

Query: 196 FVTRVFDMVLVENPEIVFRVMLSLLGQHRENLL 228
            V R++D+ L      +FRV L++L + R+ LL
Sbjct: 174 TVLRLWDLFLEGGKFFLFRVALAILKRFRKELL 206

Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, implies that these domains are GTPase activator proteins of Rab-like small GTPases. Length = 206

>gnl|CDD|227535 COG5210, COG5210, GTPase-activating protein [General function prediction only]

 Score =  159 bits (404), Expect = 1e-45
 Identities = 77/234 (32%), Positives = 120/234 (51%), Gaps = 8/234 (3%)

Query: 12  QGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNY--NVSYEQLLKQLTSHQ-HAILLDLGR 68
           +G+P   RG+VW FL                 Y   ++  +  K  T      I  DL R
Sbjct: 211 KGIPNELRGDVWEFLLGIG----FDLDKNPGLYERLLNLHREAKIPTQEIISQIEKDLSR 266

Query: 69  TFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLH-HSEEQAFMML 127
           TFP +  + + +     +L  VLKAYSL +PEVGY QG++F+A  LLL   SEEQAF  L
Sbjct: 267 TFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAAPLLLVLESEEQAFWCL 326

Query: 128 RHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTL 187
             L+   GL   +L +++ L   L     L+ +  P+L+ H     V   ++A  W LTL
Sbjct: 327 VKLLKNYGLPGYFLKNLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTL 386

Query: 188 FSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLK 241
           F  +FPL +  R++D + +E   ++F++ L++L   R+ LL+ ++ E +   LK
Sbjct: 387 FVREFPLEYALRIWDCLFLEGSSMLFQLALAILKLLRDKLLKLDSDELLDLLLK 440

Length = 496

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	264
3qye_A	331	Crystal Structure Of Human Tbc1d1 Rabgap Domain Len		2e-85
3qyb_A	301	X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rab		1e-84
3hzj_A	310	Crystal Structure Of The Rabgap Domain Of The Rabga		6e-44
2qq8_A	334	Crystal Structure Of The Putative Rabgap Domain Of		2e-21
2g77_A	410	Crystal Structure Of Gyp1 Tbc Domain In Complex Wit		3e-04

>pdb|3QYE|A Chain A, Crystal Structure Of Human Tbc1d1 Rabgap Domain Length = 331

Iteration: 1
 Score =  311 bits (797), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 147/253 (58%), Positives = 196/253 (77%), Gaps = 1/253 (0%)
Query: 7   HLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDL 66
           H  + QGVPR  RGE+W FLA+Q+  ++   + + P  +V Y++LLKQLTS QHAIL+DL
Sbjct: 53  HSAVGQGVPRHHRGEIWKFLAEQFHLKHQFPSKQQPK-DVPYKELLKQLTSQQHAILIDL 111
Query: 67  GRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMM 126
           GRTFP+HPY+S+ LG GQLSL+N+LKAYSLLD EVGYCQGLSFVAG+LLLH SEE+AF M
Sbjct: 112 GRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKM 171
Query: 127 LRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLT 186
           L+ LMF  GLR+ Y PDM  LQ+Q+YQ SRLL D++ DL+ H + HE+ P+LYAAPW LT
Sbjct: 172 LKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLT 231
Query: 187 LFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITV 246
           +F+SQFPLGFV RVFDM+ ++  E++F+V LSLLG H+  +L+ EN ETI+D++K+ +  
Sbjct: 232 MFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPN 291
Query: 247 MDKRTVDAIVKQV 259
           +    ++  + QV
Sbjct: 292 LGLVQMEKTINQV 304

>pdb|3QYB|A Chain A, X-Ray Crystal Structure Of Human Tbc1d4 (As160) Rabgap Domain Length = 301

Iteration: 1
 Score =  309 bits (791), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 145/258 (56%), Positives = 197/258 (76%), Gaps = 1/258 (0%)
Query: 7   HLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDL 66
           H  L +GVP+S+RGE+W FLA QY  ++ +   + P  ++SY++LLKQLT+ QHAIL+DL
Sbjct: 43  HTLLKEGVPKSRRGEIWQFLALQYRLRHRLPNKQQPP-DISYKELLKQLTAQQHAILVDL 101
Query: 67  GRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMM 126
           GRTFP+HPY+S  LGPGQLSLFN+LKAYSLLD EVGYCQG+SFVAGVLLLH SEEQAF M
Sbjct: 102 GRTFPTHPYFSVQLGPGQLSLFNLLKAYSLLDKEVGYCQGISFVAGVLLLHMSEEQAFEM 161
Query: 127 LRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLT 186
           L+ LM+  G R+ Y PDM +LQ+Q+YQ SRLL D++ DL+ H + +E+ P+LYAAPW LT
Sbjct: 162 LKFLMYDLGFRKQYRPDMMSLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLT 221
Query: 187 LFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITV 246
           LF+SQF LGFV RVFD++ ++  E++F+V LSLL      ++ CE+FE I+++LK  +  
Sbjct: 222 LFASQFSLGFVARVFDIIFLQGTEVIFKVALSLLSSQETLIMECESFENIVEFLKNTLPD 281
Query: 247 MDKRTVDAIVKQVHRKEL 264
           M+   ++ I+ QV   ++
Sbjct: 282 MNTSEMEKIITQVFEMDI 299

>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l Protein Length = 310

Iteration: 1
 Score =  174 bits (440), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 93/237 (39%), Positives = 136/237 (57%), Gaps = 11/237 (4%)
Query: 9   TLVQ-GVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLG 67
           TLV+ GVP + R EVW  LA  +  Q  +D          Y  L+ + ++ +  I  D+ 
Sbjct: 28  TLVKSGVPEALRAEVWQLLAGCHDNQAXLD---------RYRILITKDSAQESVITRDIH 78
Query: 68  RTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMML 127
           RTFP+H Y+    G GQ SL+ + KAYS+ D ++GYCQG SF+A VLLLH  EEQAF +L
Sbjct: 79  RTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHXPEEQAFCVL 138
Query: 128 RHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTL 187
             + +  GLR  Y  +   L  + YQ  RL  +  PDLH+HF    +    YA+ W LTL
Sbjct: 139 VKIXYDYGLRDLYRNNFEDLHCKFYQLERLXQEQLPDLHSHFSDLNLEAHXYASQWFLTL 198
Query: 188 FSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNI 244
           F+++FPL  V  + D++L E   I+F V L+LL   +E+LL+  +FE  + + +  +
Sbjct: 199 FTAKFPLCXVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQA-DFEGALKFFRVQL 254

>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human Tbc1 Domain Family Member 14 Length = 334

Iteration: 1
 Score = 99.0 bits (245), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 62/227 (27%), Positives = 103/227 (45%), Gaps = 21/227 (9%)
Query: 12  QGVPRSKRGEVW------------------LFLAQQYCKQNPMDTSKFPNYNVSYEQLLK 53
           QG+P S RG+VW                  L  A++  +      S+  N +  +    +
Sbjct: 47  QGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADR 106
Query: 54  QLTSHQHAILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGV 113
           +  +    I LD+ RTFP+   +    GP    L ++L AY+   P+VGY QG+SF+A V
Sbjct: 107 E--ASLELIKLDISRTFPNLCIFQQG-GPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAV 163
Query: 114 LLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHE 173
           L+L+     AF+   +L+ +      +  D   +      F     ++ P L AHF  + 
Sbjct: 164 LILNLDTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNN 223
Query: 174 VHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLL 220
           + P +Y   W+ TL+S   PL    R++D+   +  E +FR  L +L
Sbjct: 224 LTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGIL 270

>pdb|2G77|A Chain A, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33 Gtpase Bound To Gdp And Alf3 Length = 410

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 88/241 (36%), Gaps = 49/241 (20%)
Query: 13  GVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNY----NVSYEQLLKQLTSHQHA------- 61
           G+P+  R  VW  L        P++T +   +       Y   LK   S QH+       
Sbjct: 53  GIPKIHRPVVWKLLIGYL----PVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWH 108
Query: 62  -ILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGL------------- 107
            I +D+ RT P  P Y       Q SL  +L  +++  P  GY QG+             
Sbjct: 109 QIEIDIPRTNPHIPLYQ--FKSVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLT 166
Query: 108 -----SFVAGVLLLHHS-----------EEQAFMMLRHLMFRRGLRQTYLPDMAALQVQL 151
                S +  V +   S           E   F  L  L+    +   Y+     +  Q+
Sbjct: 167 EYLPPSQIDDVKIKDPSTYMVDEQITDLEADTFWCLTKLL--EQITDNYIHGQPGILRQV 224
Query: 152 YQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEI 211
              S+L+     DL+ HF    V    +A  W+  L   +F +G V R++D  L E  + 
Sbjct: 225 KNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQE 284
Query: 212 V 212
           V
Sbjct: 285 V 285

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	264
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	1e-101
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	2e-96
2qq8_A	334	TBC1 domain family member 14; structural genomics	3e-85
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	3e-42
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	4e-41
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	1e-37
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A Length = 331

 Score =  298 bits (765), Expect = e-101
 Identities = 147/253 (58%), Positives = 195/253 (77%), Gaps = 1/253 (0%)

Query: 12  QGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFP 71
           QGVPR  RGE+W FLA+Q+  ++    SK    +V Y++LLKQLTS QHAIL+DLGRTFP
Sbjct: 58  QGVPRHHRGEIWKFLAEQFHLKH-QFPSKQQPKDVPYKELLKQLTSQQHAILIDLGRTFP 116

Query: 72  SHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLM 131
           +HPY+S+ LG GQLSL+N+LKAYSLLD EVGYCQGLSFVAG+LLLH SEE+AF ML+ LM
Sbjct: 117 THPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLM 176

Query: 132 FRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQ 191
           F  GLR+ Y PDM  LQ+Q+YQ SRLL D++ DL+ H + HE+ P+LYAAPW LT+F+SQ
Sbjct: 177 FDMGLRKQYRPDMIILQIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQ 236

Query: 192 FPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMDKRT 251
           FPLGFV RVFDM+ ++  E++F+V LSLLG H+  +L+ EN ETI+D++K+ +  +    
Sbjct: 237 FPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQ 296

Query: 252 VDAIVKQVHRKEL 264
           ++  + QV   ++
Sbjct: 297 MEKTINQVFEMDI 309

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens} Length = 310

 Score =  284 bits (728), Expect = 2e-96
 Identities = 92/255 (36%), Positives = 142/255 (55%), Gaps = 12/255 (4%)

Query: 12  QGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFP 71
            GVP + R EVW  LA  +  Q  +D          Y  L+ + ++ +  I  D+ RTFP
Sbjct: 32  SGVPEALRAEVWQLLAGCHDNQAMLDR---------YRILITKDSAQESVITRDIHRTFP 82

Query: 72  SHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLM 131
           +H Y+    G GQ SL+ + KAYS+ D ++GYCQG SF+A VLLLH  EEQAF +L  +M
Sbjct: 83  AHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIM 142

Query: 132 FRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQ 191
           +  GLR  Y  +   L  + YQ  RL+ +  PDLH+HF    +   +YA+ W LTLF+++
Sbjct: 143 YDYGLRDLYRNNFEDLHCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAK 202

Query: 192 FPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNI--TVMDK 249
           FPL  V  + D++L E   I+F V L+LL   +E+LL+ + FE  + + +  +      +
Sbjct: 203 FPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQAD-FEGALKFFRVQLPKRYRAE 261

Query: 250 RTVDAIVKQVHRKEL 264
                +++Q    ++
Sbjct: 262 ENARRLMEQACNIKV 276

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens} Length = 334

 Score =  257 bits (657), Expect = 3e-85
 Identities = 63/247 (25%), Positives = 102/247 (41%), Gaps = 18/247 (7%)

Query: 12  QGVPRSKRGEVWLFLAQQYCKQNP----------------MDTSKFPNYNVSYEQLLKQL 55
           QG+P S RG+VW                            + T      N          
Sbjct: 47  QGIPPSVRGKVWSLAIGNELNITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADR 106

Query: 56  TSHQHAILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLL 115
            +    I LD+ RTFP+   +    GP    L ++L AY+   P+VGY QG+SF+A VL+
Sbjct: 107 EASLELIKLDISRTFPNLCIFQQG-GPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLI 165

Query: 116 LHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVH 175
           L+     AF+   +L+ +      +  D   +      F     ++ P L AHF  + + 
Sbjct: 166 LNLDTADAFIAFSNLLNKPCQMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLT 225

Query: 176 PTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFET 235
           P +Y   W+ TL+S   PL    R++D+   +  E +FR  L +L    + L +  +F  
Sbjct: 226 PDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRTALGILKLFEDILTKM-DFIH 284

Query: 236 IMDYLKT 242
           +  +L  
Sbjct: 285 MAQFLTR 291

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A* Length = 396

 Score =  147 bits (373), Expect = 3e-42
 Identities = 52/267 (19%), Positives = 86/267 (32%), Gaps = 42/267 (15%)

Query: 13  GVPRSKRGEVWLFLAQQY----CKQNPMDTSKFPNYN----VSYEQLLKQLTSHQHAILL 64
           G+P+  R  VW  L         +Q      K   Y      ++     +     H I +
Sbjct: 33  GIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEI 92

Query: 65  DLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLH------- 117
           D+ RT P  P Y       Q SL  +L  +++  P  GY QG++ +              
Sbjct: 93  DIPRTNPHIPLYQFK--SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLP 150

Query: 118 ----------------------HSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFS 155
                                   E   F  L  L+    +   Y+     +  Q+   S
Sbjct: 151 PSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLL--EQITDNYIHGQPGILRQVKNLS 208

Query: 156 RLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVE-NPEIVFR 214
           +L+     DL+ HF    V    +A  W+  L   +F +G V R++D  L E + E+   
Sbjct: 209 QLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSS 268

Query: 215 VMLSLLGQHRENLLRCENFETIMDYLK 241
             +S                + +   K
Sbjct: 269 YSMSSNDIKPPVTPTEPRVASFVTPTK 295

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A Length = 345

 Score =  143 bits (362), Expect = 4e-41
 Identities = 46/267 (17%), Positives = 88/267 (32%), Gaps = 42/267 (15%)

Query: 12  QGVPRSKRGEVWLFLAQQY----CKQNPMDTSKFPNYNVSYEQLLKQLTSHQHA-----I 62
            G+P+  R   W  L+        ++      K   Y    E          H      I
Sbjct: 49  SGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQI 108

Query: 63  LLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLL------- 115
            +D+ R  P                  +L  +++  P  GY QG++ +            
Sbjct: 109 HIDIPRMSPEALILQPK---VTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEY 165

Query: 116 ------------------LHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRL 157
                             L + E   +  +  L+   G++  Y      +Q+++     L
Sbjct: 166 IEAEEVDTVDVSGVPAEVLCNIEADTYWCMSKLL--DGIQDNYTFAQPGIQMKVKMLEEL 223

Query: 158 LLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVE---NPEIVFR 214
           +      +H H D HEV    +A  W+  L   + PL    R++D    E          
Sbjct: 224 VSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLY 283

Query: 215 VMLSLLGQHRENLLRCENFETIMDYLK 241
           V  + L + R+ +L  ++F+ ++ +L+
Sbjct: 284 VCAAFLVRWRKEILEEKDFQELLLFLQ 310

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens} Length = 294

 Score =  133 bits (335), Expect = 1e-37
 Identities = 40/253 (15%), Positives = 74/253 (29%), Gaps = 18/253 (7%)

Query: 6   KHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLD 65
              +    +P   R  VW  L        P          +  ++    +      +   
Sbjct: 44  CTFSQRFPLPSMYRALVWKVLLGIL----PPHHESHAKVMMYRKEQYLDVLHALKVVRFV 99

Query: 66  LGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFM 125
              T  +  Y           L +     S   P     +    +A   +    E+    
Sbjct: 100 SDATPQAEVYLRMYQ------LESGKLPRSPSFPLEPDDEVFLAIA-KAMEEMVEDSVDC 152

Query: 126 MLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLL 185
                 F   L   Y   +  L      F + L      L  H       P L    W  
Sbjct: 153 YWITRRFVNQLNTKYRDSLPQLP---KAFEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFK 209

Query: 186 TLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNIT 245
             F+   P   + RV+D V+  + +I+  V + +L   +  ++   + E I  +L+    
Sbjct: 210 RCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVMALNSAEKITKFLEN--- 266

Query: 246 VMDKRTVDAIVKQ 258
            + + + DAIV +
Sbjct: 267 -IPQDSSDAIVSK 278

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.8 bits (123), Expect = 1e-07
 Identities = 49/347 (14%), Positives = 97/347 (27%), Gaps = 121/347 (34%)

Query: 11  VQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVS----YEQL---LKQLTSHQHAIL 63
           ++   R       +++ Q+    N  D   F  YNVS    Y +L   L +L   ++ ++
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYN--DNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155

Query: 64  ------------------LDLGRTFPSHPYYSSPLG----PGQLSLFNVLKAYSLLDPEV 101
                               +        ++ + L     P  + L  + K    +DP  
Sbjct: 156 DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN-LKNCNSPETV-LEMLQKLLYQIDPN- 212

Query: 102 GYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDH 161
            +       + + L  HS +     LR L+  +                 Y+   L+L +
Sbjct: 213 -WTSRSDHSSNIKLRIHSIQAE---LRRLLKSK----------------PYENCLLVLLN 252

Query: 162 --YPDLHAHFD--------------------THEVHPTLYAAPWLLTLFSSQFPLGFVTR 199
                    F+                        H +L      LT          + +
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV---KSLLLK 309

Query: 200 VFDMVLVENPEIVFRVM---LSLLGQH-RENLLR--------CENFETIMD--------- 238
             D    + P  V       LS++ +  R+ L          C+   TI++         
Sbjct: 310 YLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPA 369

Query: 239 -----YLK-------TNITV---------MDKRTVDAIVKQVHRKEL 264
                + +        +I           + K  V  +V ++H+  L
Sbjct: 370 EYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	264
3qye_A	331	TBC1 domain family member 1; rabgap, RAB, myocytes	100.0
3hzj_A	310	Rabgap1L, RAB GTPase-activating protein 1-like; st	100.0
2qq8_A	334	TBC1 domain family member 14; structural genomics	100.0
2qfz_A	345	TBC1 domain family member 22A; RAB-GAP, GTPase act	100.0
1fkm_A	396	Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein	100.0
4hl4_A	292	TBC1 domain family member 20; rabgap, RAB1B, hydro	100.0
3qwl_A	294	TBC1 domain family member 7; RAB GTPase activation	100.0

>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A

Probab=100.00  E-value=5e-57  Score=388.77  Aligned_cols=262  Identities=56%  Similarity=0.985  Sum_probs=245.1

Q ss_pred             ChhHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCCCCCCCChHHHHHHHHhcchhHHHHHhhhcccCCCCCCCCCCCC
Q psy13593          2 SHHHKHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYYSSPLG   81 (264)
Q Consensus         2 ~~~~l~~~~~~GIp~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~   81 (264)
                      +.++|++++++|||+.+|+.||+.++|..+..... .+........|+++.++..+..++|++|++||+|++++|..+.+
T Consensus        48 ~~~~l~~~~~~GIP~~lR~~vW~~Llg~~~~~~~~-~~~~~~~~~~Y~~l~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~  126 (331)
T 3qye_A           48 DMEKMHSAVGQGVPRHHRGEIWKFLAEQFHLKHQF-PSKQQPKDVPYKELLKQLTSQQHAILIDLGRTFPTHPYFSAQLG  126 (331)
T ss_dssp             CHHHHHHHHHTCCCGGGHHHHHHHHHHHHHHHCCC-CSSSCCCCCCHHHHTTSCCTTHHHHHHHHTTSSTTSTTTCSTTC
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHhCcchhhhcc-hhhhhhchHHHHHHHHhcCCchhHHHHhhcccCCCchhhcCCCc
Confidence            56899999999999999999999999998622111 13344566789999999888899999999999999999999888


Q ss_pred             ccHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCCHHHHHHHHHHHHhhcCcccCCcCchHHHHHHHHHHHHHHHhh
Q psy13593         82 PGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDH  161 (264)
Q Consensus        82 ~~~~~L~~iL~~~~~~~~~i~Y~qg~~~i~~~ll~~~~e~~~f~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  161 (264)
                      .+++.|++||.+|+.++|++|||||||+|+++++++++|++|||++..++.+.+++++|.++.++++..+..+..+++.+
T Consensus       127 ~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a~ll~~~~E~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~  206 (331)
T 3qye_A          127 AGQLSLYNILKAYSLLDQEVGYCQGLSFVAGILLLHMSEEEAFKMLKFLMFDMGLRKQYRPDMIILQIQMYQLSRLLHDY  206 (331)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTSSCTTHHHHHHHHHTTSCHHHHHHHHHHHHTTTCGGGGGSTTCHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHCCCccccccHHHHHHHHHHHhhHHHHHHHHHHHHHhcCchhcCCCChHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999987789999999999999999999999999


Q ss_pred             CHHHHhhHhhcCCCcccccHhHHHHHccCCCCHHHHHHHHHHHhhcChHHHHHHHHHHHHHcHHHHhCCCCHHHHHHHHh
Q psy13593        162 YPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLK  241 (264)
Q Consensus       162 ~P~l~~~l~~~~i~~~~~~~~w~~~lF~~~l~~~~~~rlwD~~l~~g~~~l~~~~lail~~~~~~ll~~~~~~~~~~~l~  241 (264)
                      +|+|++||.+.|+++..|+.+||+|+|++.+|++.++|+||.++++|.++++++++|++..++++|++++|+++++++++
T Consensus       207 ~p~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~  286 (331)
T 3qye_A          207 HRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIK  286 (331)
T ss_dssp             CHHHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999889999999999


Q ss_pred             hccCCCCHHHHHHHHHHhhccCC
Q psy13593        242 TNITVMDKRTVDAIVKQVHRKEL  264 (264)
Q Consensus       242 ~~~~~~~~~~~~~li~~a~~l~~  264 (264)
                      +.+++++..+++.++++|+++++
T Consensus       287 ~~~p~~~~~di~~li~~A~~l~~  309 (331)
T 3qye_A          287 STLPNLGLVQMEKTINQVFEMDI  309 (331)
T ss_dssp             HTTTCCCHHHHHHHHHHHHHCCC
T ss_pred             hhCCCCCHHHHHHHHHHHHhCCc
Confidence            98999998999999999999875

>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.8e-55  Score=373.07  Aligned_cols=253  Identities=36%  Similarity=0.675  Sum_probs=234.3

Q ss_pred             ChhHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCCCCCCCChHHHHHHHHhcchhHHHHHhhhcccCCCCCCCCCCCC
Q psy13593          2 SHHHKHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYYSSPLG   81 (264)
Q Consensus         2 ~~~~l~~~~~~GIp~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~~~   81 (264)
                      ..++|++++++|||+.+|+.+|+.++|..+.         ....+.|..+.++.++.+++|++|++||+|++++|..+.+
T Consensus        22 ~~~~l~~l~~~GIP~~lR~~vW~~llg~~~~---------~~~~~~Y~~l~~~~~~~~~~I~~Dv~Rt~p~~~~f~~~~~   92 (310)
T 3hzj_A           22 RPKGLSTLVKSGVPEALRAEVWQLLAGCHDN---------QAMLDRYRILITKDSAQESVITRDIHRTFPAHDYFKDTGG   92 (310)
T ss_dssp             CCTTHHHHHHHCCCGGGHHHHHHHHTTCCCC---------HHHHHHHHHHTTSCCTTHHHHHHHHTTSSTTSTTTSSTTS
T ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHCCCcc---------hhHHHHHHHHHhccCCcHHHHHHHHHhhCCCchhhcCCCc
Confidence            3588999999999999999999999997631         1234678888888888899999999999999999999888


Q ss_pred             ccHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCCHHHHHHHHHHHHhhcCcccCCcCchHHHHHHHHHHHHHHHhh
Q psy13593         82 PGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDH  161 (264)
Q Consensus        82 ~~~~~L~~iL~~~~~~~~~i~Y~qg~~~i~~~ll~~~~e~~~f~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  161 (264)
                      .+++.|++||.+|+.++|++|||||||+||++++++++|++|||++.++|.++.++++|.++.+++...+..+..+++.+
T Consensus        93 ~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa~lL~~~~e~~aF~~l~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~  172 (310)
T 3hzj_A           93 DGQESLYKICKAYSVYDEDIGYCQGQSFLAAVLLLHMPEEQAFCVLVKIMYDYGLRDLYRNNFEDLHCKFYQLERLMQEQ  172 (310)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHSCHHHHHHHHHHHHHTSCGGGGTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCCCccCCHHHHHHHHHHhCCHHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999999999999999987789999999999999999999999999


Q ss_pred             CHHHHhhHhhcCCCcccccHhHHHHHccCCCCHHHHHHHHHHHhhcChHHHHHHHHHHHHHcHHHHhCCCCHHHHHHHHh
Q psy13593        162 YPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLK  241 (264)
Q Consensus       162 ~P~l~~~l~~~~i~~~~~~~~w~~~lF~~~l~~~~~~rlwD~~l~~g~~~l~~~~lail~~~~~~ll~~~~~~~~~~~l~  241 (264)
                      +|+|++||.+.|+++..|+.+||+|+|++.+|++.++|+||.++++|.++++++++|++...+++|+++ |+++++++++
T Consensus       173 ~p~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~~riwD~~l~~g~~~l~~v~lail~~~~~~Ll~~-d~~~~l~~l~  251 (310)
T 3hzj_A          173 LPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCMVFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQA-DFEGALKFFR  251 (310)
T ss_dssp             CHHHHHHHHHHTCCGGGTSHHHHHHTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTC-CHHHHHHHHH
T ss_pred             ChHHHHHHHHcCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998 8999999998


Q ss_pred             hccCC--CCHHHHHHHHHHhhccCC
Q psy13593        242 TNITV--MDKRTVDAIVKQVHRKEL  264 (264)
Q Consensus       242 ~~~~~--~~~~~~~~li~~a~~l~~  264 (264)
                      +.+|.  ....+++.+++.|+++++
T Consensus       252 ~~lp~~~~~~~d~~~ll~~A~~l~~  276 (310)
T 3hzj_A          252 VQLPKRYRAEENARRLMEQACNIKV  276 (310)
T ss_dssp             THHHHTTCSHHHHHHHHHHHHHSCC
T ss_pred             HhCcccccccccHHHHHHHHHhcCC
Confidence            66553  245679999999999864

>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.1e-53  Score=364.89  Aligned_cols=248  Identities=25%  Similarity=0.473  Sum_probs=222.7

Q ss_pred             ChhHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCCCCCCCChHHHHHHHHhc--------------------------
Q psy13593          2 SHHHKHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQL--------------------------   55 (264)
Q Consensus         2 ~~~~l~~~~~~GIp~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~y~~l~~~~--------------------------   55 (264)
                      +.+++|+++++|||+.+|+.||+.++|...          ....+.|+.+.+..                          
T Consensus        37 ~~~~lr~l~~~GIP~~lR~~vW~~llg~~~----------~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d~~~~~~~~  106 (334)
T 2qq8_A           37 CSRKVRDLWWQGIPPSVRGKVWSLAIGNEL----------NITHELFDICLARAKERWRSLSTGGSEVENEDAGFSAADR  106 (334)
T ss_dssp             CCHHHHHHHHTCCCHHHHHHHHHHHHCCTT----------CCCHHHHHHHHHHHHHHC----------------------
T ss_pred             ChHHHHHHHHCCCCHHHHHHHHHHHhCCcc----------ccCHHHHHHHHHHHHHHHHHhccccccCcccccccccccc
Confidence            568999999999999999999999999742          12344565544321                          


Q ss_pred             chhHHHHHhhhcccCCCCCCCCCCCCccHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCCHHHHHHHHHHHHhhcC
Q psy13593         56 TSHQHAILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRG  135 (264)
Q Consensus        56 ~~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~iL~~~~~~~~~i~Y~qg~~~i~~~ll~~~~e~~~f~~l~~l~~~~~  135 (264)
                      .+..++|++||+||+|++++|+. .+++++.|++||.+|+.++|++|||||||+||++++++++|++|||+|.++|.+..
T Consensus       107 ~~~~~~I~~Dv~RT~p~~~~F~~-~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa~lLl~~~E~~aF~~~~~l~~~~~  185 (334)
T 2qq8_A          107 EASLELIKLDISRTFPNLCIFQQ-GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAAVLILNLDTADAFIAFSNLLNKPC  185 (334)
T ss_dssp             CCHHHHHHHHHHTSSGGGCSSST-TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHSCHHHHHHHHHHHHTSHH
T ss_pred             hhHHHHHHHHHhhcCCCchhhcC-CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHHHHHhhh
Confidence            23457999999999999999987 36789999999999999999999999999999999999999999999999998764


Q ss_pred             cccCCcCchHHHHHHHHHHHHHHHhhCHHHHhhHhhcCCCcccccHhHHHHHccCCCCHHHHHHHHHHHhhcChHHHHHH
Q psy13593        136 LRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRV  215 (264)
Q Consensus       136 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~i~~~~~~~~w~~~lF~~~l~~~~~~rlwD~~l~~g~~~l~~~  215 (264)
                      +.++|..+.+++...+..+..+++..+|+|++||.+.|+++..|+.+||+|+|++++|++.++|+||+++++|..+++++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~ll~~~~P~L~~hL~~~~i~~~~~~~~W~ltlF~~~lp~~~~lriWD~~l~eg~~~l~~v  265 (334)
T 2qq8_A          186 QMAFFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLACRIWDVFCRDGEEFLFRT  265 (334)
T ss_dssp             HHHHHSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCGGGTHHHHHHTTTTTTSCHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHhccCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHcCCCccchHHHHHHHHhcccCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            56788888899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcHHHHhCCCCHHHHHHHHhhccCCCCHHHHHHHHHHhhccCC
Q psy13593        216 MLSLLGQHRENLLRCENFETIMDYLKTNITVMDKRTVDAIVKQVHRKEL  264 (264)
Q Consensus       216 ~lail~~~~~~ll~~~~~~~~~~~l~~~~~~~~~~~~~~li~~a~~l~~  264 (264)
                      ++|++...+++|+++ |+++++.++++....++   ++.+++.|.++++
T Consensus       266 alaiL~~~~~~Ll~~-d~~~il~~L~~lp~~~d---~~~l~~~a~~l~~  310 (334)
T 2qq8_A          266 ALGILKLFEDILTKM-DFIHMAQFLTRLPEDLP---AEELFASIATIQM  310 (334)
T ss_dssp             HHHHHHHTHHHHHTC-CHHHHHHHHHSCCTTCC---HHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHhcC-CHHHHHHHHHhCCCcCC---HHHHHHHHHHccC
Confidence            999999999999997 89999999997666678   8899999998864

>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A

Probab=100.00  E-value=3.3e-52  Score=360.56  Aligned_cols=257  Identities=18%  Similarity=0.311  Sum_probs=224.3

Q ss_pred             ChhHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCCCCCCCChHHHHHHHHhc---------chhHHHHHhhhcccCCC
Q psy13593          2 SHHHKHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQL---------TSHQHAILLDLGRTFPS   72 (264)
Q Consensus         2 ~~~~l~~~~~~GIp~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~y~~l~~~~---------~~~~~~I~~Dv~Rt~~~   72 (264)
                      |.++||+++++|||+.+|+.+|+.++|..+.............+..|+++.++.         .+..++|++||+||+|+
T Consensus        39 d~~~Lr~l~~~GiP~~~R~~vW~~llg~~p~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~~~I~~Dv~RT~p~  118 (345)
T 2qfz_A           39 DLEELRRLSWSGIPKPVRPMTWKLLSGYLPANVDRRPATLQRKQKEYFAFIEHYYDSRNDEVHQDTYRQIHIDIPRMSPE  118 (345)
T ss_dssp             CHHHHHHHHTTCCCGGGHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHC--------CHHHHHHHHHHGGGCSCH
T ss_pred             CHHHHHHHHHCCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchHHHHHHHHHhCcccCCc
Confidence            678999999999999999999999999864221111111223457888888763         23568999999999999


Q ss_pred             CCCCCCCCCccHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcC-------------------------CHHHHHHHH
Q psy13593         73 HPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHH-------------------------SEEQAFMML  127 (264)
Q Consensus        73 ~~~f~~~~~~~~~~L~~iL~~~~~~~~~i~Y~qg~~~i~~~ll~~~-------------------------~e~~~f~~l  127 (264)
                       ++|+.+  .+++.|+|||.+|+.++|++|||||||+|++++++++                         +|++|||||
T Consensus       119 -~~F~~~--~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a~ll~v~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF~~f  195 (345)
T 2qfz_A          119 -ALILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVLCNIEADTYWCM  195 (345)
T ss_dssp             -HHHTSH--HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHHHHHHHHHGGGCC-----CCCCTTSCHHHHHHHHHHHHHHH
T ss_pred             -cccCCc--hHHHHHHHHHHHHHHHCCCCCcccChHHHHHHHHHHHHhhhcccccccccchhhhhhhhhhhHHHHHHHHH
Confidence             999886  6888999999999999999999999999999998653                         289999999


Q ss_pred             HHHHhhcCcccCCcCchHHHHHHHHHHHHHHHhhCHHHHhhHhhcCCCcccccHhHHHHHccCCCCHHHHHHHHHHHhhc
Q psy13593        128 RHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVE  207 (264)
Q Consensus       128 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~i~~~~~~~~w~~~lF~~~l~~~~~~rlwD~~l~~  207 (264)
                      ..+|..  .+++|..+.++++..+..+..+++.++|+|++||.+.|+++..|+++||+++|++++|++.++|+||.++++
T Consensus       196 ~~lm~~--~~~~y~~~~~~i~~~~~~l~~ll~~~dP~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~  273 (345)
T 2qfz_A          196 SKLLDG--IQDNYTFAQPGIQMKVKMLEELVSRIDEQVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSE  273 (345)
T ss_dssp             HHHHHT--SGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTS
T ss_pred             HHHHHc--cccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhC
Confidence            999988  478899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChH---HHHHHHHHHHHHcHHHHhCCCCHHHHHHHHhhccCC-CCHHHHHHHHHHhhccC
Q psy13593        208 NPE---IVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITV-MDKRTVDAIVKQVHRKE  263 (264)
Q Consensus       208 g~~---~l~~~~lail~~~~~~ll~~~~~~~~~~~l~~~~~~-~~~~~~~~li~~a~~l~  263 (264)
                      |..   +++++++|++...+++|+++.|+++++.++++..+. .+..+++.++++|+.++
T Consensus       274 g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~L~~~p~~~~~~~di~~ll~~A~~l~  333 (345)
T 2qfz_A          274 PDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLFLQNLPTAHWDDEDISLLLAEAYRLK  333 (345)
T ss_dssp             TTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHHHTSCSCTTCCHHHHHHHHHHHHHHH
T ss_pred             CCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHcCCCcCCchhHHHHHHHHHHHHH
Confidence            986   789999999999999999878999999999975443 45667999999999864

>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*

Probab=100.00  E-value=3.6e-51  Score=358.78  Aligned_cols=255  Identities=22%  Similarity=0.353  Sum_probs=223.7

Q ss_pred             ChhHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCCCCCCCChHHHHHHHHhc--------chhHHHHHhhhcccCCCC
Q psy13593          2 SHHHKHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQL--------TSHQHAILLDLGRTFPSH   73 (264)
Q Consensus         2 ~~~~l~~~~~~GIp~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~y~~l~~~~--------~~~~~~I~~Dv~Rt~~~~   73 (264)
                      +.++||+++++|||+.+|+.+|+.++|..+.............+..|+++.++.        .+..++|++||+||+|++
T Consensus        22 d~~~Lr~l~~~GIP~~lR~~vW~~LLg~~~~~~~~~~~~l~~~~~~Y~~l~~~~~~~~~~~~~~~~~qI~~Dv~RT~p~~  101 (396)
T 1fkm_A           22 NQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPHI  101 (396)
T ss_dssp             CHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSSTTS
T ss_pred             CHHHHHHHHHcCCCHHHHHHHHHHHHCCCCCChhHHHHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHhhhhCCCc
Confidence            678999999999999999999999999874221111111223457899988752        234579999999999999


Q ss_pred             CCCCCCCCccHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhc----------------------CC-------HHHHH
Q psy13593         74 PYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLH----------------------HS-------EEQAF  124 (264)
Q Consensus        74 ~~f~~~~~~~~~~L~~iL~~~~~~~~~i~Y~qg~~~i~~~ll~~----------------------~~-------e~~~f  124 (264)
                      ++|+.+  .+++.|+|||.+|+.++|++|||||||+|+++|+++                      ++       |++||
T Consensus       102 ~~F~~~--~~~~~L~rIL~aya~~np~iGY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~E~daF  179 (396)
T 1fkm_A          102 PLYQFK--SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADTF  179 (396)
T ss_dssp             GGGGSH--HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHHH
T ss_pred             ccccCc--hHHHHHHHHHHHHHHHCCCCCcccCcHHHHHHHHHHHHHhhccccccccccccchhhccchhhhhhhHHHHH
Confidence            999986  899999999999999999999999999999999874                      23       89999


Q ss_pred             HHHHHHHhhcCcccCCcCchHHHHHHHHHHHHHHHhhCHHHHhhHhhcCCCcccccHhHHHHHccCCCCHHHHHHHHHHH
Q psy13593        125 MMLRHLMFRRGLRQTYLPDMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMV  204 (264)
Q Consensus       125 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~i~~~~~~~~w~~~lF~~~l~~~~~~rlwD~~  204 (264)
                      |||..+|..  ++++|..+.+++...+..+..+++.++|+|++||.+.|+++..|+++||.++|++++|++.++||||.+
T Consensus       180 ~~f~~lm~~--~~~~f~~~~~~i~~~~~~l~~LL~~~dP~L~~hL~~~~i~~~~f~~rW~l~LF~~~~p~~~vlrlWD~~  257 (396)
T 1fkm_A          180 WCLTKLLEQ--ITDNYIHGQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTY  257 (396)
T ss_dssp             HHHHHHHGG--GGGGSSTTCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHH
T ss_pred             HHHHHHHHH--HHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHhhCCHHHHHHHHHHH
Confidence            999999987  588999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhcC---------------------------------------------------------------hHHHHHHHHHHHH
Q psy13593        205 LVEN---------------------------------------------------------------PEIVFRVMLSLLG  221 (264)
Q Consensus       205 l~~g---------------------------------------------------------------~~~l~~~~lail~  221 (264)
                      +++|                                                               ..+++++|+|+|.
T Consensus       258 l~eg~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~AlL~  337 (396)
T 1fkm_A          258 LSETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLI  337 (396)
T ss_dssp             HHHHC------------------------------------------------------------CHHHHHHHHHHHHHH
T ss_pred             HHCCCccccchhhhhcccccCCccccccccccccccccccccccccccccccccccccchhccccchHHHHHHHHHHHHH
Confidence            9988                                                               3689999999999


Q ss_pred             HcHHHHhCCCCHHHHHHHHhhccCC--CCHHHHHHHHHHhhcc
Q psy13593        222 QHRENLLRCENFETIMDYLKTNITV--MDKRTVDAIVKQVHRK  262 (264)
Q Consensus       222 ~~~~~ll~~~~~~~~~~~l~~~~~~--~~~~~~~~li~~a~~l  262 (264)
                      ..+++|+++ |+++++++|++ ++.  .++.+++.++++|+.+
T Consensus       338 ~~r~~Ll~~-df~~~l~~L~~-~p~~~~~~~di~~ll~~A~~l  378 (396)
T 1fkm_A          338 KWSDQLMEM-DFQETITFLQN-PPTKDWTETDIEMLLSEAFIW  378 (396)
T ss_dssp             HTHHHHTTC-CHHHHHHHHTS-CSCTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc-CHHHHHHHHhc-CCCCCcccccHHHHHHHHHHH
Confidence            999999996 89999999997 444  3467799999999865

>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*

Probab=100.00  E-value=9.3e-50  Score=337.43  Aligned_cols=246  Identities=19%  Similarity=0.301  Sum_probs=213.6

Q ss_pred             ChhHHHHHHhcC---CCCchHHHHHHHHHhhhhhcCCCCCCCCCCChHHHHHHHHhcchhHHHHHhhhcccCCCCCCCCC
Q psy13593          2 SHHHKHLTLVQG---VPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYYSS   78 (264)
Q Consensus         2 ~~~~l~~~~~~G---Ip~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~I~~Dv~Rt~~~~~~f~~   78 (264)
                      |.++||++++.|   +|+.+|+.||+.++|+.+.....          .|........+..++|++||+||+++++.|..
T Consensus        33 dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~----------~~~~~~~~~~~~~~qI~~Dv~RT~~~~~~~~~  102 (292)
T 4hl4_A           33 DVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP----------ISGKNLRQMSKDYQQVLLDVRRSLRRFPPGMP  102 (292)
T ss_dssp             CHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS----------CCCTTHHHHCTTHHHHHHHHHTTGGGSCTTSC
T ss_pred             cHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC----------chhhhhcccchhHHHHHHhhhhhhhhccCCCC
Confidence            678999999843   89999999999999988532111          12222244567789999999999999988764


Q ss_pred             C--CCccHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcCCHHHHHHHHHHHHhhcCcccCCcCchHHHHHHHHHHHH
Q psy13593         79 P--LGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQVQLYQFSR  156 (264)
Q Consensus        79 ~--~~~~~~~L~~iL~~~~~~~~~i~Y~qg~~~i~~~ll~~~~e~~~f~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  156 (264)
                      .  .+.+++.|.+||.+|+.++|++|||||||+||++++++++|++|||++..++... ++++|.++..+++..+..+..
T Consensus       103 ~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa~lLl~~~e~~aF~~l~~l~~~~-l~~~~~~~~~~~~~~~~~l~~  181 (292)
T 4hl4_A          103 EEQREGLQEELIDIILLILERNPQLHYYQGYHDIVVTFLLVVGERLATSLVEKLSTHH-LRDFMDPTMDNTKHILNYLMP  181 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHHHHHHHHCHHHHHHHHHHHHHTT-TTGGGCSSSCTTTGGGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHHHHHHHcCHHHHHHHHHHHHHHH-HHHhcccchHHHHHHHHHHHH
Confidence            2  2457889999999999999999999999999999999999999999999999874 788999998888888999999


Q ss_pred             HHHhhCHHHHhhHhhcCCCcccccHhHHHHHccCCCC-HHHHHHHHHHHhhcChHHHHHHHHHHHHHcHHHHhCCC-CHH
Q psy13593        157 LLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFP-LGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLLRCE-NFE  234 (264)
Q Consensus       157 ll~~~~P~l~~~l~~~~i~~~~~~~~w~~~lF~~~l~-~~~~~rlwD~~l~~g~~~l~~~~lail~~~~~~ll~~~-~~~  234 (264)
                      +++..+|+|++||.+.|++ ..|+.+||+|+|++++| ++.++|+||.++++|..+++++++|++...+++|++++ +.+
T Consensus       182 ll~~~~P~L~~hL~~~~i~-~~~~~~W~ltlF~~~l~~~~~~~rlWD~~l~~g~~~~~~v~~ail~~~~~~Ll~~~~d~~  260 (292)
T 4hl4_A          182 IIDQVNPELHDFMQSAEVG-TIFALSWLITWFGHVLSDFRHVVRLYDFFLACHPLMPIYFAAVIVLYREQEVLDCDCDMA  260 (292)
T ss_dssp             HHHHHCHHHHHHHC-CCCC-SGGGHHHHHTTTTTTSCCHHHHHHHHHHHHHSCTTHHHHHHHHHHHHTHHHHHTSCCSTT
T ss_pred             HHHHHCHHHHHHHHHcCCC-cchHHHHHHHHHhhhcCcHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence            9999999999999999995 69999999999999996 99999999999999999999999999999999999975 677


Q ss_pred             HHHHHHhhccCCCCHHHHHHHHHHhhcc
Q psy13593        235 TIMDYLKTNITVMDKRTVDAIVKQVHRK  262 (264)
Q Consensus       235 ~~~~~l~~~~~~~~~~~~~~li~~a~~l  262 (264)
                      .++.++++....++   ++.++++|.++
T Consensus       261 ~l~~~l~~lp~~~d---~~~li~~A~~l  285 (292)
T 4hl4_A          261 SVHHLLSQIPQDLP---YETLISRAGDL  285 (292)
T ss_dssp             HHHHHHHSCCSSCC---HHHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCC---HHHHHHHHHHH
Confidence            88888886555788   89999999875

>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}

Probab=100.00  E-value=2.3e-40  Score=277.79  Aligned_cols=233  Identities=18%  Similarity=0.217  Sum_probs=186.4

Q ss_pred             CChhHHHHHHhcC-CCCchHHHHHHHHHhhhhhcCCCCCCCCCCChHHHHHHHHhcchhHHHHHhhhcccCCCCCCCCCC
Q psy13593          1 MSHHHKHLTLVQG-VPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHAILLDLGRTFPSHPYYSSP   79 (264)
Q Consensus         1 ~~~~~l~~~~~~G-Ip~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~y~~l~~~~~~~~~~I~~Dv~Rt~~~~~~f~~~   79 (264)
                      .|.++||+.|++| ||+.+|+.||+.|+|+.+.+.+......+..++.|+++.++.     .+..++++..         
T Consensus        38 ~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~~~~~l~~kr~eY~~l~~~~-----~~~r~I~~~t---------  103 (294)
T 3qwl_A           38 LDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHESHAKVMMYRKEQYLDVLHAL-----KVVRFVSDAT---------  103 (294)
T ss_dssp             CCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGGHHHHHHHHHHHHHHHHHHH-----HHTTSCCTTS---------
T ss_pred             CCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchhHHHHHHHHHHHHHHHHHhh-----hhhhhhhccC---------
Confidence            4789999999999 999999999999999987544443344555667788877761     1222222211         


Q ss_pred             CCccHHHHHHHHHHHHhh----------CCCCCcccchhHHHHHHhh-cCCHHHHHHHHHHHHhhcCcccCCcCchHHHH
Q psy13593         80 LGPGQLSLFNVLKAYSLL----------DPEVGYCQGLSFVAGVLLL-HHSEEQAFMMLRHLMFRRGLRQTYLPDMAALQ  148 (264)
Q Consensus        80 ~~~~~~~L~~iL~~~~~~----------~~~i~Y~qg~~~i~~~ll~-~~~e~~~f~~l~~l~~~~~~~~~~~~~~~~~~  148 (264)
                        +   .....+..|...          +++ .++|||..|+++++. +.+|++|||||.++|++  ++++|.++.++++
T Consensus       104 --P---~~~vfl~~~~~~~~~l~~~~~~~~~-~~~~~~~~Iaa~ll~l~~~E~dAFW~f~~Lm~~--l~~~f~~~~~gl~  175 (294)
T 3qwl_A          104 --P---QAEVYLRMYQLESGKLPRSPSFPLE-PDDEVFLAIAKAMEEMVEDSVDCYWITRRFVNQ--LNTKYRDSLPQLP  175 (294)
T ss_dssp             --C---HHHHHHHHHHHHHTCCCSSTTSCCC-HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH--HHTTTTTTGGGHH
T ss_pred             --c---hHHHHHHHHHcccccccccccCCcc-cchhhHHHHHHHHHHHhCCHHHHHHHHHHHHHH--HHHhhCCChhHHH
Confidence              1   111223333221          122 245899999998874 56899999999999998  5789999998887


Q ss_pred             HHHHHHHHHHHhhCHHHHhhHhhcCCCcccccHhHHHHHccCCCCHHHHHHHHHHHhhcChHHHHHHHHHHHHHcHHHHh
Q psy13593        149 VQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENPEIVFRVMLSLLGQHRENLL  228 (264)
Q Consensus       149 ~~~~~~~~ll~~~~P~l~~~l~~~~i~~~~~~~~w~~~lF~~~l~~~~~~rlwD~~l~~g~~~l~~~~lail~~~~~~ll  228 (264)
                      ..   +.++++..+|+|++||.+.|+.+..++.+||+++|++++|++.++|+||.++++|.++++++|+|+++.++++|+
T Consensus       176 ~~---l~~LL~~~dP~L~~HL~~~~i~~~~~~~rWfl~lF~~~~p~~~vlRlWD~~~~~~~~~l~~valAiL~~~r~~Ll  252 (294)
T 3qwl_A          176 KA---FEQYLNLEDGRLLTHLRMCSAAPKLPYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVM  252 (294)
T ss_dssp             HH---HHHHHHHHCHHHHHHHHHTTCGGGSCHHHHHTSTTTTTSCHHHHHHHHHHHHTTCSTHHHHHHHHHHHHTHHHHH
T ss_pred             HH---HHHHHHHHHHHHHHHHHHCCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHh
Confidence            65   489999999999999999999877777799999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHhhccCCCCHHHHHHHHHHhhcc
Q psy13593        229 RCENFETIMDYLKTNITVMDKRTVDAIVKQVHRK  262 (264)
Q Consensus       229 ~~~~~~~~~~~l~~~~~~~~~~~~~~li~~a~~l  262 (264)
                      ++++.++++++++ .+|..+   ++.++++|+++
T Consensus       253 ~~~~~~~il~~Lq-~lp~~d---i~~ll~~A~~l  282 (294)
T 3qwl_A          253 ALNSAEKITKFLE-NIPQDS---SDAIVSKAIDL  282 (294)
T ss_dssp             HCCSHHHHHHHHT-TCCSTT---HHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHH-cCCccc---HHHHHHHHHHH
Confidence            9977799999999 466666   89999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	264
d1fkma1	194	a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {	4e-19
d1fkma2	188	a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {	5e-15

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.7 bits (198), Expect = 4e-19
 Identities = 32/168 (19%), Positives = 58/168 (34%), Gaps = 15/168 (8%)

Query: 12  QGVPRSKRGEVWLFLA----------QQYCKQNPMDTSKFPNYNVSYEQLLKQLTSHQHA 61
            G+P+  R  VW  L           + + ++   +      +  S +      T HQ  
Sbjct: 31  NGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQ-- 88

Query: 62  ILLDLGRTFPSHPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHHSEE 121
           I +D+ RT P  P Y       Q SL  +L  +++  P  GY QG++ +          E
Sbjct: 89  IEIDIPRTNPHIPLYQFK--SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTE 146

Query: 122 QAFMMLRHLMFRRGLRQTYLP-DMAALQVQLYQFSRLLLDHYPDLHAH 168
                    +  +      +   +  L+   +     LL+   D + H
Sbjct: 147 YLPPSQIDDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNYIH 194

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.1 bits (168), Expect = 5e-15
 Identities = 20/117 (17%), Positives = 38/117 (32%), Gaps = 1/117 (0%)

Query: 147 LQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLV 206
           +  Q+   S+L+     DL+ HF    V    +A  W+  L   +F +G V R++D  L 
Sbjct: 5   ILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLS 64

Query: 207 ENPEIVFRVMLSLLGQHRENLLRCENFETIMDYLKTNITVMDKRTVDAIVKQVHRKE 263
           E  + V           +  +              T         +  +      ++
Sbjct: 65  ETSQEVTSSYSMSSNDIKPPVT-PTEPRVASFVTPTKDFQSPTTALSNMTPNNAVED 120

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	264
d1fkma1	194	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.96
d1fkma2	188	Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccha	99.85

>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=2.7e-30  Score=203.70  Aligned_cols=137  Identities=23%  Similarity=0.355  Sum_probs=106.6

Q ss_pred             CChhHHHHHHhcCCCCchHHHHHHHHHhhhhhcCCCCCCCCCCChHHHHHHHHhcc--------hhHHHHHhhhcccCCC
Q psy13593          1 MSHHHKHLTLVQGVPRSKRGEVWLFLAQQYCKQNPMDTSKFPNYNVSYEQLLKQLT--------SHQHAILLDLGRTFPS   72 (264)
Q Consensus         1 ~~~~~l~~~~~~GIp~~~R~~vW~~ll~~~~~~~~~~~~~~~~~~~~y~~l~~~~~--------~~~~~I~~Dv~Rt~~~   72 (264)
                      ++.++||+++++|||+.+|+.+|+.++|..+..............+.|+...+...        +..++|++||+||+|+
T Consensus        20 i~~~~lr~l~~~Gip~~lR~~vW~~llg~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~I~~Dv~RT~~~   99 (194)
T d1fkma1          20 INQQDLRQISWNGIPKIHRPVVWKLLIGYLPVNTKRQEGFLQRKRKEYRDSLKHTFSDQHSRDIPTWHQIEIDIPRTNPH   99 (194)
T ss_dssp             CCHHHHHHHHTTCCCGGGHHHHHHHHTTCSCSBGGGHHHHHHHHHHHHHHHHHHTSSSSCSTHHHHHHHHHHHGGGSSTT
T ss_pred             CCHHHHHHHHHcCCChHHHHHHHHHHHhhcCCchhhHHHHHHHHhhhhhhhhhhhhhcccccchHHHHHHHHHHHhcCCc
Confidence            46799999999999999999999999998642221111112223344444443311        2336899999999999


Q ss_pred             CCCCCCCCCccHHHHHHHHHHHHhhCCCCCcccchhHHHHHHhhcC-----------------------------CHHHH
Q psy13593         73 HPYYSSPLGPGQLSLFNVLKAYSLLDPEVGYCQGLSFVAGVLLLHH-----------------------------SEEQA  123 (264)
Q Consensus        73 ~~~f~~~~~~~~~~L~~iL~~~~~~~~~i~Y~qg~~~i~~~ll~~~-----------------------------~e~~~  123 (264)
                      +++|.++  .+++.|+|||.+|+.+||++|||||||+|+++++.++                             .|++|
T Consensus       100 ~~~f~~~--~~~~~L~rIL~~ya~~np~~gY~QGmn~i~a~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ead~  177 (194)
T d1fkma1         100 IPLYQFK--SVQNSLQRILYLWAIRHPASGYVQGINDLVTPFFETFLTEYLPPSQIDDVEIKDPSTYMVDEQITDLEADT  177 (194)
T ss_dssp             SGGGGSH--HHHHHHHHHHHHHHHHCTTTCSCTTHHHHHHHHHHHHHGGGSCGGGGGGTTTSCGGGTCCHHHHHHHHHHH
T ss_pred             ccccccc--hhHHHHHHHHHHHHHHCCCCCeeecchHHHHHHHHHHhhhhhhhhhhhhhhhcchhhhhhhhhhhhHHHHH
Confidence            9999886  8899999999999999999999999999999998653                             28899


Q ss_pred             HHHHHHHHhhcCcccCCc
Q psy13593        124 FMMLRHLMFRRGLRQTYL  141 (264)
Q Consensus       124 f~~l~~l~~~~~~~~~~~  141 (264)
                      ||||..+|..  ++++|.
T Consensus       178 F~~f~~lm~~--i~d~y~  193 (194)
T d1fkma1         178 FWCLTKLLEQ--ITDNYI  193 (194)
T ss_dssp             HHHHHHHHGG--GGGGSS
T ss_pred             HHHHHHHHHh--hhccCC
Confidence            9999999987  455553

>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: Left-handed superhelix
superfamily: Ypt/Rab-GAP domain of gyp1p
family: Ypt/Rab-GAP domain of gyp1p
domain: Ypt/Rab-GAP domain of gyp1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.85  E-value=4.2e-21  Score=149.60  Aligned_cols=119  Identities=21%  Similarity=0.354  Sum_probs=108.1

Q ss_pred             chHHHHHHHHHHHHHHHhhCHHHHhhHhhcCCCcccccHhHHHHHccCCCCHHHHHHHHHHHhhcCh-------------
Q psy13593        143 DMAALQVQLYQFSRLLLDHYPDLHAHFDTHEVHPTLYAAPWLLTLFSSQFPLGFVTRVFDMVLVENP-------------  209 (264)
Q Consensus       143 ~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~i~~~~~~~~w~~~lF~~~l~~~~~~rlwD~~l~~g~-------------  209 (264)
                      +++|++..+..+..+++.++|+||+||.+.|+++..|+++|+.++|++++|++.++|+||.++++|.             
T Consensus         1 gqpGi~~~~~~l~~ll~~~dp~L~~hl~~~~i~~~~~~~rW~~~lf~~~~~~~~~~rlWD~~~~~~~~~~~~~~~~~l~~   80 (188)
T d1fkma2           1 GQPGILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMSSND   80 (188)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCTHHHHHHHHHTTTGGGSCHHHHHHHHHHHHHHHC-------------
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeHHHHHHHhhccCCHHHHHHHHHHHHhCCchhhhhhhhhhhhh
Confidence            4689999999999999999999999999999999999999999999999999999999999999743             


Q ss_pred             --------------------------------------------------HHHHHHHHHHHHHcHHHHhCCCCHHHHHHH
Q psy13593        210 --------------------------------------------------EIVFRVMLSLLGQHRENLLRCENFETIMDY  239 (264)
Q Consensus       210 --------------------------------------------------~~l~~~~lail~~~~~~ll~~~~~~~~~~~  239 (264)
                                                                        ++..++|+|++...|++|++. |+++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~A~L~~~r~~Ll~~-df~~~l~~  159 (188)
T d1fkma2          81 IKPPVTPTEPRVASFVTPTKDFQSPTTALSNMTPNNAVEDSGKMRQSSLNEFHVFVCAAFLIKWSDQLMEM-DFQETITF  159 (188)
T ss_dssp             -----------------------------------------------CHHHHHHHHHHHHHHHTHHHHTTC-CHHHHHHH
T ss_pred             hccccccccccchhhhhhccccccccccccccchhhhhhcccccccccchHHHHHHHHHHHHHHHHHHHHc-cHHHHHHH
Confidence                                                              568899999999999999975 89999999


Q ss_pred             HhhccC-CCCHHHHHHHHHHhhcc
Q psy13593        240 LKTNIT-VMDKRTVDAIVKQVHRK  262 (264)
Q Consensus       240 l~~~~~-~~~~~~~~~li~~a~~l  262 (264)
                      +++..+ +..+++++.++.+|+.+
T Consensus       160 Lq~~P~~~~~~~di~~ll~~A~~~  183 (188)
T d1fkma2         160 LQNPPTKDWTETDIEMLLSEAFIW  183 (188)
T ss_dssp             HTSCSCTTCCHHHHHHHHHHHHHH
T ss_pred             HhcCCCCCCCcccHHHHHHHHHHH
Confidence            997543 25678899999999754