Psyllid ID: psy1361
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1274 | 2.2.26 [Sep-21-2011] | |||||||
| P09884 | 1462 | DNA polymerase alpha cata | yes | N/A | 0.521 | 0.454 | 0.514 | 0.0 | |
| Q9DE46 | 1458 | DNA polymerase alpha cata | N/A | N/A | 0.522 | 0.456 | 0.512 | 0.0 | |
| P33609 | 1465 | DNA polymerase alpha cata | yes | N/A | 0.522 | 0.454 | 0.517 | 0.0 | |
| P26019 | 1488 | DNA polymerase alpha cata | yes | N/A | 0.529 | 0.453 | 0.491 | 0.0 | |
| O89042 | 1451 | DNA polymerase alpha cata | yes | N/A | 0.514 | 0.451 | 0.516 | 0.0 | |
| O48653 | 1534 | DNA polymerase alpha cata | yes | N/A | 0.506 | 0.420 | 0.417 | 1e-135 | |
| Q9FHA3 | 1524 | DNA polymerase alpha cata | yes | N/A | 0.482 | 0.403 | 0.418 | 1e-128 | |
| P28040 | 1405 | DNA polymerase alpha cata | yes | N/A | 0.515 | 0.467 | 0.388 | 1e-119 | |
| P13382 | 1468 | DNA polymerase alpha cata | yes | N/A | 0.482 | 0.418 | 0.371 | 1e-106 | |
| Q94636 | 1492 | DNA polymerase alpha cata | N/A | N/A | 0.518 | 0.443 | 0.370 | 1e-105 |
| >sp|P09884|DPOLA_HUMAN DNA polymerase alpha catalytic subunit OS=Homo sapiens GN=POLA1 PE=1 SV=2 | Back alignment and function desciption |
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Score = 662 bits (1707), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 362/703 (51%), Positives = 477/703 (67%), Gaps = 39/703 (5%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK--NKKEGEET----G 613
++ITN+ GN++SRTLMGGRSERNEFLLLHAF+E +Y++PDKQ + +K G+E G
Sbjct: 766 LQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEEIDG 825
Query: 614 EANK-GKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI------ 666
+ NK KGRKKAAY+GGLVL+PK GFYDKFI+L+DFNSLYPSIIQE+NICFTT+
Sbjct: 826 DTNKYKKGRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTTVQRVASE 885
Query: 667 PVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDI 726
++ +D + + E LP+ ++ GILP EI+KLVE R+QVK LMKQ +L+ DL++QYDI
Sbjct: 886 AQKVTEDGEQEQIPE-LPDPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDI 944
Query: 727 RQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTD 786
RQKALKLTANSMYGCLGF SRF+A+PLAALVT KGREIL++TK +V+ +N EVIYGDTD
Sbjct: 945 RQKALKLTANSMYGCLGFSYSRFYAKPLAALVTYKGREILMHTKEMVQKMNLEVIYGDTD 1004
Query: 787 SLMISCNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLS 846
S+MI+ N + + VFK+GN++KSE NKLYK LE+DIDGV+K +LLLKKKKYAAL + S
Sbjct: 1005 SIMINTNSTNLEEVFKLGNKVKSEVNKLYKLLEIDIDGVFKSLLLLKKKKYAALVVEPTS 1064
Query: 847 NGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKI 906
+G + QE+KG+D+VRRDW LA + G FVI QIL +QS D ++NI + + +I
Sbjct: 1065 DGNYVTKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSR-----DTIVENIQKRLIEI 1119
Query: 907 RTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYII 966
++ NG VP++ EI K LTK P++Y D+K+LPHV VAL +N+ +K+K GDT+SY+I
Sbjct: 1120 GENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVKAGDTVSYVI 1179
Query: 967 CEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECL 1026
C+DG++ A+QRAY E+L+ L ID YYL+QQIHPVV R+ EPI+G DAV IA L
Sbjct: 1180 CQDGSNLTASQRAYAPEQLQKQDNLTIDTQYYLAQQIHPVVARICEPIDGIDAVLIATWL 1239
Query: 1027 GLDTSLYRSQIKESIQQSEEN--ILGVGEAE---EVKYQFCDKFEFTCMNPSCKQVNTVE 1081
GLD + +R + EEN +LG G A+ E KY+ C++F+ C P+C N +
Sbjct: 1240 GLDPTQFRVH---HYHKDEENDALLG-GPAQLTDEEKYRDCERFKCPC--PTCGTENIYD 1293
Query: 1082 APTRLSTHGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGC 1141
S + L C N +CK P T+ L NKL D+ ++I KYY+GWL CE+P C
Sbjct: 1294 NVFDGSGTDMEPSLYRCSNIDCKASPLTFTVQLSNKLIMDIRRFIKKYYDGWLICEEPTC 1353
Query: 1142 SDLTRRCPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTKSDTPSI 1199
+ TR PL LC C K L Y++ LY QL F+ YI D AL K T
Sbjct: 1354 RNRTRHLPLQFSRTGPLCPACMKATLQPEYSDKSLYTQLCFYRYIFDAECALEKLTTDHE 1413
Query: 1200 K-------FDSETYMGYCKMKQHVERFLESSAYNIVDLKKLFS 1235
K F + Y K+K E+FL S Y+ V+L KLF+
Sbjct: 1414 KDKLKKQFFTPKVLQDYRKLKNTAEQFLSRSGYSEVNLSKLFA 1456
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Plays an essential role in the initiation of DNA replication. During the S phase of the cell cycle, the DNA polymerase alpha complex (composed of a catalytic subunit POLA1/p180, a regulatory subunit POLA2/p70 and two primase subunits PRIM1/p49 and PRIM2/p58) is recruited to DNA at the replicative forks via direct interactions with MCM10 and WDHD1. The primase subunit of the polymerase alpha complex initiates DNA synthesis by oligomerising short RNA primers on both leading and lagging strands. These primers are initially extended by the polymerase alpha catalytic subunit and subsequently transferred to polymerase delta and polymerase epsilon for processive synthesis on the lagging and leading strand, respectively. The reason this transfer occurs is because the polymerase alpha has limited processivity and lacks intrinsic 3' exonuclease activity for proofreading error, and therefore is not well suited for replicating long complexes. Homo sapiens (taxid: 9606) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7 |
| >sp|Q9DE46|DPOLA_XENLA DNA polymerase alpha catalytic subunit OS=Xenopus laevis GN=pola1 PE=2 SV=1 | Back alignment and function description |
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| >sp|P33609|DPOLA_MOUSE DNA polymerase alpha catalytic subunit OS=Mus musculus GN=Pola1 PE=1 SV=2 | Back alignment and function description |
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| >sp|P26019|DPOLA_DROME DNA polymerase alpha catalytic subunit OS=Drosophila melanogaster GN=DNApol-alpha180 PE=1 SV=2 | Back alignment and function description |
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| >sp|O89042|DPOLA_RAT DNA polymerase alpha catalytic subunit (Fragment) OS=Rattus norvegicus GN=Pola1 PE=2 SV=1 | Back alignment and function description |
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| >sp|O48653|DPOLA_ORYSJ DNA polymerase alpha catalytic subunit OS=Oryza sativa subsp. japonica GN=Os01g0868300 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q9FHA3|DPOLA_ARATH DNA polymerase alpha catalytic subunit OS=Arabidopsis thaliana GN=POLA PE=3 SV=2 | Back alignment and function description |
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| >sp|P28040|DPOA_SCHPO DNA polymerase alpha catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol1 PE=1 SV=1 | Back alignment and function description |
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| >sp|P13382|DPOA_YEAST DNA polymerase alpha catalytic subunit A OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=POL1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q94636|DPOLA_OXYNO DNA polymerase alpha catalytic subunit OS=Oxytricha nova PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1274 | ||||||
| 357608358 | 1477 | putative DNA polymerase alpha catalytic | 0.518 | 0.447 | 0.550 | 0.0 | |
| 242009635 | 1474 | DNA polymerase alpha catalytic subunit, | 0.520 | 0.449 | 0.503 | 0.0 | |
| 328711134 | 1437 | PREDICTED: DNA polymerase alpha catalyti | 0.536 | 0.475 | 0.514 | 0.0 | |
| 405964566 | 1492 | DNA polymerase alpha catalytic subunit [ | 0.523 | 0.447 | 0.523 | 0.0 | |
| 62086805 | 1441 | DNA polymerase alpha catalytic subunit [ | 0.522 | 0.462 | 0.525 | 0.0 | |
| 390353241 | 1480 | PREDICTED: DNA polymerase alpha catalyti | 0.521 | 0.448 | 0.505 | 0.0 | |
| 390353239 | 1480 | PREDICTED: DNA polymerase alpha catalyti | 0.521 | 0.448 | 0.505 | 0.0 | |
| 260796197 | 1526 | hypothetical protein BRAFLDRAFT_120187 [ | 0.524 | 0.437 | 0.514 | 0.0 | |
| 344251522 | 1016 | hypothetical protein I79_016081 [Cricetu | 0.720 | 0.903 | 0.413 | 0.0 | |
| 321468910 | 1439 | hypothetical protein DAPPUDRAFT_304346 [ | 0.554 | 0.491 | 0.480 | 0.0 |
| >gi|357608358|gb|EHJ65949.1| putative DNA polymerase alpha catalytic subunit [Danaus plexippus] | Back alignment and taxonomy information |
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Score = 707 bits (1826), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/683 (55%), Positives = 485/683 (71%), Gaps = 22/683 (3%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGK----NKKEGEETGEA 615
++IT + GN++SRTLMGGRSERNEFLLLHAF EK+Y++PDK YGK + E +E G
Sbjct: 771 LQITQIAGNIMSRTLMGGRSERNEFLLLHAFTEKNYIVPDKIYGKKADGDDDEQDEAGNV 830
Query: 616 NKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVR--MLQD 673
+K + +KKAAY+GGLVL+PKKGFYDK I+LMDFNSLYPSIIQEYNICFTTI + D
Sbjct: 831 SKKQAKKKAAYAGGLVLDPKKGFYDKLILLMDFNSLYPSIIQEYNICFTTIKRKNGASSD 890
Query: 674 SDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKL 733
DI L LP + G+LP++I+KLVESRR+VK LMK P+L+S+L MQY+IRQ ALKL
Sbjct: 891 DDINNLV--LPAPNTEFGVLPTQIRKLVESRREVKRLMKSPDLASELYMQYNIRQMALKL 948
Query: 734 TANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCN 793
TANSMYGCLGF +SRF+A+PLAALVT KGREIL++TK +V+ LNYEV+YGDTDSLMI+ N
Sbjct: 949 TANSMYGCLGFTHSRFYAKPLAALVTMKGREILMDTKEIVQKLNYEVVYGDTDSLMINTN 1008
Query: 794 VNDYDSVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICS 853
DYD VFKIGN +K E NK YKQ+ELDIDGV+KY+LLLKKKKYAA+ +SK +G+ I +
Sbjct: 1009 CLDYDYVFKIGNDLKREINKKYKQIELDIDGVFKYLLLLKKKKYAAVVVSKSKSGEFIYN 1068
Query: 854 QEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNG 913
QE KG+D+VRRDWSQLA+EAGKF+++QIL EQ + D+RL++I H+ K++ DL N
Sbjct: 1069 QEHKGLDIVRRDWSQLAAEAGKFILTQILSEQ-----TADERLESIQNHLNKLKEDLVNS 1123
Query: 914 FVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSE 973
+PL+LL ITKQLTK P EY D+ PHVQVALRLN+ NS++ K+GD + YIICEDGT+
Sbjct: 1124 KMPLSLLTITKQLTKNPNEYADKNNQPHVQVALRLNSKNSRRFKKGDIVPYIICEDGTAN 1183
Query: 974 AATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGLDTSLY 1033
+ATQRAY+IEELKN+ L +D YYL+ Q+HPV++R+ EPIEG D R+A+CLGLD S Y
Sbjct: 1184 SATQRAYHIEELKNSEHLSVDYKYYLAHQLHPVISRICEPIEGLDPARVADCLGLDPSGY 1243
Query: 1034 RSQIKESIQQSEENILGVGEAEEVKYQFCDKFEFTCMNPSCKQVNTVEAPTRLSTHGVVF 1093
R K+ I ++ + E ++ KY++C +F F C+N C+ N + R V
Sbjct: 1244 RQITKKEISNTDTYEV---ENDKEKYRYCKEFTFICVNEQCRTENRIRDTFRQVEKESVT 1300
Query: 1094 VLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSDLTRRCP--LG 1151
L+ C N +C V P YL + N+LS M +Y +YY GWL CEDP C + R P
Sbjct: 1301 FLERCQNEKCAVKPIDYLACIQNQLSLQMRQYHSEYYTGWLACEDPACGYRSPRLPQTFA 1360
Query: 1152 LKTRLCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALTKSDTPSIKFDSETYMGYCK 1211
LC C K + R YTE LY Q++FF ++ D+ K +T K +
Sbjct: 1361 AGYPLCRLCEKGVMFREYTEKDLYLQINFFLFLFDV----NKHNTTKTKISPNILSAFQV 1416
Query: 1212 MKQHVERFLESSAYNIVDLKKLF 1234
+K VE L +SAY I++L KLF
Sbjct: 1417 LKVMVEEVLANSAYAIINLSKLF 1439
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Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242009635|ref|XP_002425588.1| DNA polymerase alpha catalytic subunit, putative [Pediculus humanus corporis] gi|212509481|gb|EEB12850.1| DNA polymerase alpha catalytic subunit, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
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| >gi|328711134|ref|XP_003244454.1| PREDICTED: DNA polymerase alpha catalytic subunit-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|405964566|gb|EKC30035.1| DNA polymerase alpha catalytic subunit [Crassostrea gigas] | Back alignment and taxonomy information |
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| >gi|62086805|dbj|BAD92009.1| DNA polymerase alpha catalytic subunit [Iguana iguana] | Back alignment and taxonomy information |
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| >gi|390353241|ref|XP_003728069.1| PREDICTED: DNA polymerase alpha catalytic subunit-like isoform 2 [Strongylocentrotus purpuratus] | Back alignment and taxonomy information |
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| >gi|390353239|ref|XP_003728068.1| PREDICTED: DNA polymerase alpha catalytic subunit-like isoform 1 [Strongylocentrotus purpuratus] | Back alignment and taxonomy information |
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| >gi|260796197|ref|XP_002593091.1| hypothetical protein BRAFLDRAFT_120187 [Branchiostoma floridae] gi|229278315|gb|EEN49102.1| hypothetical protein BRAFLDRAFT_120187 [Branchiostoma floridae] | Back alignment and taxonomy information |
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| >gi|344251522|gb|EGW07626.1| hypothetical protein I79_016081 [Cricetulus griseus] | Back alignment and taxonomy information |
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| >gi|321468910|gb|EFX79893.1| hypothetical protein DAPPUDRAFT_304346 [Daphnia pulex] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1274 | ||||||
| UNIPROTKB|Q9DE46 | 1458 | pola1 "DNA polymerase alpha ca | 0.522 | 0.456 | 0.487 | 1.4e-244 | |
| ZFIN|ZDB-GENE-030114-9 | 1468 | pola1 "polymerase (DNA directe | 0.521 | 0.452 | 0.482 | 1.1e-240 | |
| UNIPROTKB|F6Y1C9 | 1467 | POLA1 "DNA polymerase" [Canis | 0.524 | 0.455 | 0.484 | 1.3e-239 | |
| UNIPROTKB|A6NMQ1 | 1468 | POLA1 "DNA polymerase" [Homo s | 0.527 | 0.457 | 0.475 | 2.7e-239 | |
| UNIPROTKB|P09884 | 1462 | POLA1 "DNA polymerase alpha ca | 0.527 | 0.459 | 0.475 | 2.7e-239 | |
| RGD|621816 | 1451 | Pola1 "polymerase (DNA directe | 0.511 | 0.449 | 0.489 | 3.5e-239 | |
| UNIPROTKB|O89042 | 1451 | Pola1 "DNA polymerase alpha ca | 0.511 | 0.449 | 0.489 | 3.5e-239 | |
| MGI|MGI:99660 | 1465 | Pola1 "polymerase (DNA directe | 0.521 | 0.453 | 0.490 | 1.5e-238 | |
| UNIPROTKB|Q59J88 | 1441 | Q59J88 "DNA polymerase" [Iguan | 0.521 | 0.461 | 0.497 | 2.4e-238 | |
| UNIPROTKB|F1NR19 | 1462 | POLA1 "DNA polymerase" [Gallus | 0.522 | 0.455 | 0.486 | 2.7e-235 |
| UNIPROTKB|Q9DE46 pola1 "DNA polymerase alpha catalytic subunit" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
|---|
Score = 1614 (573.2 bits), Expect = 1.4e-244, Sum P(3) = 1.4e-244
Identities = 339/695 (48%), Positives = 443/695 (63%)
Query: 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDK------QYXXXXXXXXXXX 613
++ITN+ GNV+SRTLMGGRSERNE+LLLHAF E ++++PDK Q
Sbjct: 766 LQITNIAGNVMSRTLMGGRSERNEYLLLHAFTENNFIVPDKPVFKKMQQTTVEDNDDMGT 825
Query: 614 XXXXXXXRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTI--PVRML 671
RKKAAY+GGLVLEPK GFYDKFI+L+DFNSLYPSIIQEYNICFTT+
Sbjct: 826 DQNKNKSRKKAAYAGGLVLEPKVGFYDKFILLLDFNSLYPSIIQEYNICFTTVHREAPST 885
Query: 672 QDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKAL 731
Q + LP ++ GILP EI+KLVE RR VK LMKQP+L+ DL +QYDIRQKAL
Sbjct: 886 QKGEDQDEIPELPHSDLEMGILPREIRKLVERRRHVKQLMKQPDLNPDLYLQYDIRQKAL 945
Query: 732 KLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMIS 791
KLTANSMYGCLGF SRF+A+PLAALVT +GREILL+TK +V+ +N EVIYGDTDS+MI+
Sbjct: 946 KLTANSMYGCLGFSYSRFYAKPLAALVTHQGREILLHTKEMVQKMNLEVIYGDTDSIMIN 1005
Query: 792 CNVNDYDSVFKIGNQIKSECNKLYKQLELDIDGVXXXXXXXXXXXXXXXXXXXXXNGKMI 851
N N+ + VFK+GN++KSE NK YK LE+DIDG+ +GK +
Sbjct: 1006 TNCNNLEEVFKLGNRVKSEINKSYKLLEIDIDGIFKSLLLLKKKKYAALTVEPTGDGKYV 1065
Query: 852 CSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLD 911
QE+KG+D+VRRDW +LA +AG +VISQIL +Q D ++NI + + +I ++
Sbjct: 1066 TKQELKGLDIVRRDWCELAKQAGNYVISQILSDQPR-----DSIVENIQKKLTEIGENVT 1120
Query: 912 NGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGT 971
NG VP+T EI K LTK P++Y D+K+LPHV VAL +N+ +K+K GDTISY+IC+DG+
Sbjct: 1121 NGTVPITQYEINKALTKDPQDYPDKKSLPHVHVALWINSQGGRKVKAGDTISYVICQDGS 1180
Query: 972 SEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGLDTS 1031
+ +A+QRAY E+L+ L ID YYLSQQ+HPVV R+ EPI+G D+ IA LGLD S
Sbjct: 1181 NLSASQRAYAQEQLQKQENLSIDTQYYLSQQVHPVVARICEPIDGIDSALIAMWLGLDPS 1240
Query: 1032 LYRSQIKESIQQSEEN--ILGVGE--AEEVKYQFCDKFEFTCMNPSCKQVNTVEAPTRLS 1087
+R+ QQ EEN +LG +E KY+ C++F+F C P C N + S
Sbjct: 1241 QFRAH--RHYQQDEENDALLGGPSQLTDEEKYRDCERFKFFC--PKCGTENIYDNVFDGS 1296
Query: 1088 THGVVFVLDECINPECKVPPYTYLPHLINKLSQDMNKYIVKYYEGWLKCEDPGCSDLTRR 1147
+ L C PEC P Y+ + NKL D+ +YI KYY GWL CE+ C + TRR
Sbjct: 1297 GLQIEPGLKRCSKPECDASPLDYVIQVHNKLLLDIRRYIKKYYSGWLVCEEKTCQNRTRR 1356
Query: 1148 CPLGLKTR--LCTTCHKYKLHRVYTELQLYQQLSFFHYICD----ITKALTKSDTPSIK- 1200
PL +C C K L Y E LY QL F+ +I D + K +++ + +K
Sbjct: 1357 LPLSFSRNGPICQACSKATLRSEYPEKALYTQLCFYRFIFDWDYALEKVVSEQERGHLKK 1416
Query: 1201 -FDSETYMGYCKMKQHVERFLESSAYNIVDLKKLF 1234
E+ Y K+K V++ L S Y+ V+L KLF
Sbjct: 1417 KLFQESENQYKKLKSTVDQVLSRSGYSEVNLSKLF 1451
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| ZFIN|ZDB-GENE-030114-9 pola1 "polymerase (DNA directed), alpha 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F6Y1C9 POLA1 "DNA polymerase" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|A6NMQ1 POLA1 "DNA polymerase" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|P09884 POLA1 "DNA polymerase alpha catalytic subunit" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| RGD|621816 Pola1 "polymerase (DNA directed), alpha 1, catalytic subunit" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|O89042 Pola1 "DNA polymerase alpha catalytic subunit" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| MGI|MGI:99660 Pola1 "polymerase (DNA directed), alpha 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q59J88 Q59J88 "DNA polymerase" [Iguana iguana (taxid:8517)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NR19 POLA1 "DNA polymerase" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O89042 | DPOLA_RAT | 2, ., 7, ., 7, ., 7 | 0.5166 | 0.5141 | 0.4514 | yes | N/A |
| P09884 | DPOLA_HUMAN | 2, ., 7, ., 7, ., 7 | 0.5149 | 0.5211 | 0.4541 | yes | N/A |
| P33609 | DPOLA_MOUSE | 2, ., 7, ., 7, ., 7 | 0.5171 | 0.5227 | 0.4546 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 2.7.7 | 0.766 |
| 4th Layer | 2.7.7.7 | 0.824 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1274 | |||
| cd05532 | 400 | cd05532, POLBc_alpha, DNA polymerase type-B alpha | 0.0 | |
| TIGR00592 | 1172 | TIGR00592, pol2, DNA polymerase (pol2) | 1e-164 | |
| pfam00136 | 458 | pfam00136, DNA_pol_B, DNA polymerase family B | 1e-128 | |
| COG0417 | 792 | COG0417, PolB, DNA polymerase elongation subunit ( | 1e-99 | |
| cd00145 | 323 | cd00145, POLBc, DNA polymerase type-B family catal | 2e-70 | |
| PRK05762 | 786 | PRK05762, PRK05762, DNA polymerase II; Reviewed | 8e-70 | |
| cd05536 | 371 | cd05536, POLBc_B3, DNA polymerase type-B B3 subfam | 2e-67 | |
| cd05533 | 393 | cd05533, POLBc_delta, DNA polymerase type-B delta | 2e-65 | |
| smart00486 | 474 | smart00486, POLBc, DNA polymerase type-B family | 2e-61 | |
| TIGR00592 | 1172 | TIGR00592, pol2, DNA polymerase (pol2) | 3e-60 | |
| PTZ00166 | 1054 | PTZ00166, PTZ00166, DNA polymerase delta catalytic | 8e-54 | |
| cd05537 | 371 | cd05537, POLBc_Pol_II, DNA polymerase type-II subf | 1e-48 | |
| PRK05761 | 787 | PRK05761, PRK05761, DNA polymerase I; Reviewed | 2e-44 | |
| cd05534 | 451 | cd05534, POLBc_zeta, DNA polymerase type-B zeta su | 9e-43 | |
| cd05530 | 372 | cd05530, POLBc_B1, DNA polymerase type-B B1 subfam | 4e-38 | |
| cd05531 | 352 | cd05531, POLBc_B2, DNA polymerase type-B B2 subfam | 4e-36 | |
| pfam08996 | 187 | pfam08996, zf-DNA_Pol, DNA Polymerase alpha zinc f | 1e-33 | |
| PHA03036 | 1004 | PHA03036, PHA03036, DNA polymerase; Provisional | 2e-23 | |
| cd05538 | 347 | cd05538, POLBc_Pol_II_B, DNA polymerase type-II B | 4e-20 | |
| pfam12254 | 67 | pfam12254, DNA_pol_alpha_N, DNA polymerase alpha s | 2e-14 | |
| PHA02528 | 881 | PHA02528, 43, DNA polymerase; Provisional | 3e-10 | |
| PHA03334 | 1545 | PHA03334, PHA03334, putative DNA polymerase cataly | 1e-07 |
| >gnl|CDD|99915 cd05532, POLBc_alpha, DNA polymerase type-B alpha subfamily catalytic domain | Back alignment and domain information |
|---|
Score = 655 bits (1693), Expect = 0.0
Identities = 251/411 (61%), Positives = 305/411 (74%), Gaps = 11/411 (2%)
Query: 619 KGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITT 678
K +KKA Y+GGLVLEPKKG YDKFI+L+DFNSLYPSIIQEYNICFTT+ D D
Sbjct: 1 KKKKKAKYAGGLVLEPKKGLYDKFILLLDFNSLYPSIIQEYNICFTTVDRADPDDEDDEE 60
Query: 679 LCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSM 738
LP + GILP I+KLVE RRQVK LMK D Q DIRQ ALKLTANSM
Sbjct: 61 PP--LPPSDQEKGILPRIIRKLVERRRQVKKLMKSEK-DPDKKAQLDIRQLALKLTANSM 117
Query: 739 YGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYD 798
YGCLGF SRF+A+PLAAL+T+KGREIL TK LVE +N EVIYGDTDS+MI+ DY+
Sbjct: 118 YGCLGFSYSRFYAKPLAALITSKGREILQKTKDLVEKMNLEVIYGDTDSIMINTGTTDYE 177
Query: 799 SVFKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKG 858
K+GN+IK E NK YK+LE+DIDGV+K +LLLKKKKYAAL + GK +E+KG
Sbjct: 178 EAKKLGNKIKKEVNKSYKKLEIDIDGVFKRLLLLKKKKYAALKVVDDDKGK--LKKEVKG 235
Query: 859 VDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLT 918
+D+VRRDW L+ E G +V+ QIL ++S +D ++NIHE+++KI DL NG +PL
Sbjct: 236 LDIVRRDWCPLSKEIGNYVLDQILSDKSR-----EDIVENIHEYLRKINEDLRNGKIPLE 290
Query: 919 LLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEAATQR 978
ITKQLTK PEEY D+K+LPHVQVALR+N +K+K GDTI YIIC+DG+S++ R
Sbjct: 291 KFIITKQLTKNPEEYPDKKSLPHVQVALRMNKRG-RKVKAGDTIPYIICKDGSSKSLADR 349
Query: 979 AYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGLD 1029
AY+ +E+K N LKID+ YYLSQQI P ++RL EPIEGTDAVR+AECLGLD
Sbjct: 350 AYHPDEVKKNENLKIDIEYYLSQQILPPISRLCEPIEGTDAVRLAECLGLD 400
|
Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase (Pol) alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. In most organisms no specific repair role, other than check point control, has been assigned to this enzyme. Pol alpha contains both polymerase and exonuclease domains, but lacks exonuclease activity suggesting that the exonuclease domain may be for structural purposes only. Length = 400 |
| >gnl|CDD|233037 TIGR00592, pol2, DNA polymerase (pol2) | Back alignment and domain information |
|---|
| >gnl|CDD|215742 pfam00136, DNA_pol_B, DNA polymerase family B | Back alignment and domain information |
|---|
| >gnl|CDD|223494 COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >gnl|CDD|99912 cd00145, POLBc, DNA polymerase type-B family catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|235595 PRK05762, PRK05762, DNA polymerase II; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|99919 cd05536, POLBc_B3, DNA polymerase type-B B3 subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|99916 cd05533, POLBc_delta, DNA polymerase type-B delta subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|214691 smart00486, POLBc, DNA polymerase type-B family | Back alignment and domain information |
|---|
| >gnl|CDD|233037 TIGR00592, pol2, DNA polymerase (pol2) | Back alignment and domain information |
|---|
| >gnl|CDD|240301 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|99920 cd05537, POLBc_Pol_II, DNA polymerase type-II subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|235594 PRK05761, PRK05761, DNA polymerase I; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|99917 cd05534, POLBc_zeta, DNA polymerase type-B zeta subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|99913 cd05530, POLBc_B1, DNA polymerase type-B B1 subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|99914 cd05531, POLBc_B2, DNA polymerase type-B B2 subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|220087 pfam08996, zf-DNA_Pol, DNA Polymerase alpha zinc finger | Back alignment and domain information |
|---|
| >gnl|CDD|222962 PHA03036, PHA03036, DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|99921 cd05538, POLBc_Pol_II_B, DNA polymerase type-II B subfamily catalytic domain | Back alignment and domain information |
|---|
| >gnl|CDD|221491 pfam12254, DNA_pol_alpha_N, DNA polymerase alpha subunit p180 N terminal | Back alignment and domain information |
|---|
| >gnl|CDD|177369 PHA02528, 43, DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|223049 PHA03334, PHA03334, putative DNA polymerase catalytic subunit; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1274 | |||
| KOG0970|consensus | 1429 | 100.0 | ||
| TIGR00592 | 1172 | pol2 DNA polymerase (pol2). This family is based o | 100.0 | |
| PTZ00166 | 1054 | DNA polymerase delta catalytic subunit; Provisiona | 100.0 | |
| cd05534 | 451 | POLBc_zeta DNA polymerase type-B zeta subfamily ca | 100.0 | |
| cd05532 | 400 | POLBc_alpha DNA polymerase type-B alpha subfamily | 100.0 | |
| cd05533 | 393 | POLBc_delta DNA polymerase type-B delta subfamily | 100.0 | |
| KOG0969|consensus | 1066 | 100.0 | ||
| cd05536 | 371 | POLBc_B3 DNA polymerase type-B B3 subfamily cataly | 100.0 | |
| KOG0968|consensus | 1488 | 100.0 | ||
| COG0417 | 792 | PolB DNA polymerase elongation subunit (family B) | 100.0 | |
| PF00136 | 466 | DNA_pol_B: DNA polymerase family B Several related | 100.0 | |
| PHA03036 | 1004 | DNA polymerase; Provisional | 100.0 | |
| PRK05761 | 787 | DNA polymerase I; Reviewed | 100.0 | |
| PRK05762 | 786 | DNA polymerase II; Reviewed | 100.0 | |
| cd05537 | 371 | POLBc_Pol_II DNA polymerase type-II subfamily cata | 100.0 | |
| cd05530 | 372 | POLBc_B1 DNA polymerase type-B B1 subfamily cataly | 100.0 | |
| cd00145 | 323 | POLBc DNA polymerase type-B family catalytic domai | 100.0 | |
| cd05538 | 347 | POLBc_Pol_II_B DNA polymerase type-II B subfamily | 100.0 | |
| PHA02528 | 881 | 43 DNA polymerase; Provisional | 100.0 | |
| cd05531 | 352 | POLBc_B2 DNA polymerase type-B B2 subfamily cataly | 100.0 | |
| cd05535 | 621 | POLBc_epsilon DNA polymerase type-B epsilon subfam | 100.0 | |
| PHA03334 | 1545 | putative DNA polymerase catalytic subunit; Provisi | 100.0 | |
| PF08996 | 188 | zf-DNA_Pol: DNA Polymerase alpha zinc finger; Inte | 100.0 | |
| smart00486 | 471 | POLBc DNA polymerase type-B family. DNA polymerase | 100.0 | |
| PHA02523 | 391 | 43B DNA polymerase subunit B; Provisional | 100.0 | |
| KOG1798|consensus | 2173 | 99.97 | ||
| PHA02524 | 498 | 43A DNA polymerase subunit A; Provisional | 99.88 | |
| PF12254 | 67 | DNA_pol_alpha_N: DNA polymerase alpha subunit p180 | 99.88 | |
| PHA02563 | 630 | DNA polymerase; Provisional | 99.66 | |
| PF03104 | 325 | DNA_pol_B_exo1: DNA polymerase family B, exonuclea | 99.25 | |
| TIGR00592 | 1172 | pol2 DNA polymerase (pol2). This family is based o | 98.85 | |
| PF08490 | 396 | DUF1744: Domain of unknown function (DUF1744); Int | 97.86 | |
| PHA02735 | 716 | putative DNA polymerase type B; Provisional | 96.93 | |
| KOG1798|consensus | 2173 | 94.29 | ||
| PF03175 | 459 | DNA_pol_B_2: DNA polymerase type B, organellar and | 83.81 | |
| PHA03144 | 746 | helicase-primase primase subunit; Provisional | 82.31 | |
| PF03175 | 459 | DNA_pol_B_2: DNA polymerase type B, organellar and | 81.75 | |
| PHA03181 | 764 | helicase-primase primase subunit; Provisional | 81.57 | |
| PF14205 | 55 | Cys_rich_KTR: Cysteine-rich KTR | 81.43 |
| >KOG0970|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-256 Score=2261.72 Aligned_cols=1134 Identities=41% Similarity=0.669 Sum_probs=923.4
Q ss_pred ccccccchhcccchhhHHHHHHHHHHhcCCCcceeceeccccccccccChHHHHHHHHhhccCCceEeCCCccccccCcc
Q psy1361 41 KMEGGRAKRQKIDKTNKFAAFQKLKDLKGQGVKHKYEFTADENVYEEVSEKEYTERVLKRQEDDWIDDDGGDGYVEDGRE 120 (1274)
Q Consensus 41 ~~~~~R~rr~~~~k~gr~aALe~LKa~RG~g~k~~yeVee~~~VYdEVDE~eY~kiVr~R~~DDFIVDDdG~GYvDdGrE 120 (1274)
|-+++|+||.+++|++|++|||+||+|||. ..+|+|+++++|||+|||+||+||||+||.|||||||||.||||+|+|
T Consensus 4 s~ses~~rR~~~~ks~r~~alerLk~ar~s--~~~Ye~e~~~~vYD~VDeeEY~k~v~~r~~DdfvVdDdG~GYvd~G~d 81 (1429)
T KOG0970|consen 4 SESESRRRRSRGSKSSRLAALERLKAARTS--GDKYEVEEVEDVYDTVDEEEYRKIVRQRLDDDFVVDDDGVGYVDNGVD 81 (1429)
T ss_pred CCcchhhhhhccCchhhHHHHHHHHHhhcc--CcccccccccccccccCHHHHHHHHHHHhcCCeEEeCCCccccccCcc
Confidence 344889999999999999999999999977 689999999999999999999999999999999999999999999999
Q ss_pred ccCCCCccch--hhhh-h-hhh---hhccccCCCCCCccchHHhhhcCCCCcccccccCCCchHHHHHHhhcccCCCC--
Q psy1361 121 IFDDDIEDVP--QKKE-K-HDK---RKKNKNIQNPNAKGDIQKLLANMPVKKKKKEEVQLNNDDVLADLLSEVNTTIA-- 191 (1274)
Q Consensus 121 ifDdd~edd~--~~~~-k-~k~---~kK~kkk~~~~~~~~I~~~F~~~~~Kk~~~~~~~~~~Dd~L~diL~e~~~~~~-- 191 (1274)
+||.+.++++ ..++ | ||+ .||+.+..+.+...+|+++|.+.++|+..+.+..+++|+||+||||+++.+++
T Consensus 82 eeD~~~~s~ed~~nek~k~gk~~kk~Kr~~k~~~~t~~~~~kk~~~~~~aka~~d~k~~~k~d~~~~diLg~~~e~~~e~ 161 (1429)
T KOG0970|consen 82 EEDWSSPSDEDTGNEKKKGGKKPKKDKRKEKDHPVTQMLSTKKSNSALVAKATADQKKSVKIDNFMADILGSIDEEEAEE 161 (1429)
T ss_pred hhhccCCCccccccccccccccccchhhhhccccccccccccccchhhhhhhhccccccccchhhHHHHhhhcccccccc
Confidence 7775322222 2221 1 222 22223333677889999999999999888888899999999999999997754
Q ss_pred -c-----------ccccCCCccccccCCCCCCCCChhhhhhccCCCcccccccc----CCCCCCCCCcccccccCcchhh
Q psy1361 192 -P-----------TLKLNTKTNEIVIPKEEPPAPTAKEYLANFSKPIKVEKKIE----KPIKKEPSPLKDEIKSNDSVME 255 (1274)
Q Consensus 192 -~-----------~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 255 (1274)
+ ..+||+...+. ++++.+.+ ..++....+... .....+.+....++-..+ ..+
T Consensus 162 ~~~~~~i~~~~~s~~~rk~~~~a~-n~~~~~~~---------~~~~~kki~~~~s~~ke~~s~Pvp~~~~~~~~~d-~~~ 230 (1429)
T KOG0970|consen 162 PEKLKKIRPATPSSPKRKFDSAAK-NDSLVPVA---------IAKKKKKIAEDSSSDKERESSPVPTKRADFYIPD-VQP 230 (1429)
T ss_pred ccccccccCCCCcccccccccccc-CCccCccc---------ccccccccCCCCCcCCCCCCCCCCchhhhccCCC-ccc
Confidence 1 11222222221 22221111 011100000000 000000000100100000 001
Q ss_pred hhhhhhhcCCCCCCCcc-cccccccccccccccccCcchhhhhhhhhHhhhcccccccccccccccccccccccCCCCCC
Q psy1361 256 VEMNVAEQSKEEPVDDG-LWEQMQIDDWDNSQQTQDVLPEQAKVELQIEAIESQSIEEKVDVTNVESVSSAVELSTSPPP 334 (1274)
Q Consensus 256 ~~~~~~~~~~~~~~~~~-~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1274)
...+..+....+++++. ++.++..++.. ..+. ....+......+|....... ...++..+|
T Consensus 231 ~~~e~e~~~~ate~e~~e~~~pl~~ee~~-~die-et~~~~~~~~eeV~~~~~a~--------------~~~~s~~s~-- 292 (1429)
T KOG0970|consen 231 EADEVENPVKATEFEDTELENPLADEEDI-EDIE-ETIAMKKLSMEEVTDTARAN--------------KDTISKLSP-- 292 (1429)
T ss_pred ccccccCcccccccccccccccccccccc-ccHH-HHHHhhhHHHHHHhhhhhcc--------------ccchhhcCC--
Confidence 11111111112333222 44443321110 0000 00000000000000000000 000000111
Q ss_pred cccccccccchhhHhhhcCCCCCCCcccccccCCCCCcccccc-CCceeEEEeeehhccccCCCCEEEEEeeeeecCCCc
Q psy1361 335 QVVEKKEHKCAEWEAIQTEPSTSEPQVHSRTADDSLPLATDHE-NKKVFRMFFLDAFEDIYKQPGTVYLFGKVFVKENNS 413 (1274)
Q Consensus 335 ~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~fyw~d~~E~~~~~~g~~~lfGKv~~~~~~~ 413 (1274)
..+ ++|..-...+..+.+ ..++++.+.++++...+ ++++|+|||||||||+++.||+|||||||+. ++.+
T Consensus 293 -----~s~--~~~~~di~~~~~~~~-~~~~~~~s~~~~~~~~D~e~~~l~f~wlDaYee~~~~~g~l~LFGKVk~-~~~t 363 (1429)
T KOG0970|consen 293 -----GSP--PGEPEDIKGLGPSNS-LQVDTDSSSGVLVKPEDVEDGSLRFFWLDAYEEVYKAPGTLYLFGKVKL-SGDT 363 (1429)
T ss_pred -----CCC--CcChhhhhccCcccc-hhhccchhhcccccccccccceEEEEEehhhHHHhCCCceEEEEeeeec-cCCC
Confidence 111 223222222211111 34455556667776665 7999999999999999999999999999998 6899
Q ss_pred eEEEEEEEeceeeeEEEecCCC------CcCCCCccCHHHHHHHHHH-HHhhcCCCceeeeeeeccccccCCCCCCccce
Q psy1361 414 HSSCCVIVQNIDRKIYLLPRSE------HLKTKEPVSIAQVYSEFDQ-IATQYKILDFKSRKIEKKYAFNLPGVPDLSEY 486 (1274)
Q Consensus 414 ~~Sccv~v~~~~R~~y~lPr~~------~~~~~~~~~~~dv~~e~~~-~~~~~~i~~~~~k~v~r~yaf~~~~vp~~~~y 486 (1274)
|+||||+|+||+|+||||||+. ++++ .++++.|||+||.+ ++++++++.||+|+|+++|||+.||||..++|
T Consensus 364 ~~Sccv~V~ni~R~lyflPR~~~l~~~~~e~~-~~~s~~dv~~E~~~~l~~k~~~~~fk~k~v~~~yafe~~dvp~~~dy 442 (1429)
T KOG0970|consen 364 YVSCCVVVKNICRVLYFLPRPIKLSAAVGEDS-IPESKRDVYKEVGSLLSNKLGLTEFKSKPVKKNYAFELPDVPMKSDY 442 (1429)
T ss_pred ceEEEEEEcCeeeEEEecccccccccccCCcc-chhhHHHHHHHHHHHHHhhhhhhHhhhhhhhhhhccccCCCCCCCcc
Confidence 9999999999999999999985 4444 67899999999998 67889999999999999999999999999999
Q ss_pred eeEeeccCCCCCCCCCCCCceeeeccCchhHHHHHHhhccccCCCeeeccccccCCCccceeEEEEEeccccc-------
Q psy1361 487 LEVRYSAKCPALPSDLSGDTFSHVFGTKSSFLENLLLERKIKGPSWLEFPEAEKFPSRISWCKYEVQCNQMEK------- 559 (1274)
Q Consensus 487 l~v~y~~~~p~lp~~~~G~tfs~vfgt~~s~~E~fll~rki~GP~wl~i~~~~~~~~~~swck~e~~~~~~~~------- 559 (1274)
|||.||+..|.||+|++|.||+||||++|++||+|++.|||||||||+|.++.....++|||++||.+.+|++
T Consensus 443 LeV~y~~~~p~LP~Dlkgdsfshvfgt~tn~lE~fll~rKimGPCWlkv~~~s~~~~~~SwCk~Ev~v~sP~nI~~~~~~ 522 (1429)
T KOG0970|consen 443 LEVLYSYETPKLPSDLKGDSFSHVFGTNTNPLERFLLSRKIMGPCWLKVKGYSDPPRNASWCKVEVTVKSPQNITVVCSK 522 (1429)
T ss_pred eEEeccccCCCCccccccchHHHHhccCccHHHHHHHhccccCceEEEeecCCCCCCCccceeeEEEecCCcceEEeecC
Confidence 9999999999999999999999999999999999999999999999999999977899999999999999977
Q ss_pred --------------------------------------------------------------------------------
Q psy1361 560 -------------------------------------------------------------------------------- 559 (1274)
Q Consensus 560 -------------------------------------------------------------------------------- 559 (1274)
T Consensus 523 ~a~~Ppl~llsL~i~T~~N~k~~~~Eiv~is~l~~~~~~id~p~p~~~~~~~~c~l~rP~~~~fP~g~~ela~~k~~~v~ 602 (1429)
T KOG0970|consen 523 KAPPPPLTLLSLNIRTSMNPKQNKNEIVMISMLCFHNFSIDKPAPAPAFPRHFCVLTRPPGTSFPLGLKELAKQKLSKVV 602 (1429)
T ss_pred CCCCCCeeEEEeeeeehhccccchhhhhhhhhhhcccccccCCCCCCcccCcceeEecCCCCcCCchHHHHHHhccCceE
Confidence
Q ss_pred --------------------------------------------------------------------------------
Q psy1361 560 -------------------------------------------------------------------------------- 559 (1274)
Q Consensus 560 -------------------------------------------------------------------------------- 559 (1274)
T Consensus 603 ~~~sErALLs~fla~~~~~dpD~iVgHn~~~~~l~VLl~R~~~~Kip~WS~IgRLrrS~~~kfg~~s~~~e~~~~aGRl~ 682 (1429)
T KOG0970|consen 603 LHNSERALLSHFLAMLNKEDPDVIVGHNIQGFYLDVLLSRLHALKIPNWSSIGRLRRSWPPKFGRSSSFGEFFIIAGRLM 682 (1429)
T ss_pred EecCHHHHHHHHHHHhhccCCCEEEEeccccchHHHHHHHHHHhcCcchhhhhhhhhccccccCCcccccccccccceEE
Confidence
Q ss_pred ---------------------------------------------------------------------------chhhh
Q psy1361 560 ---------------------------------------------------------------------------IRITN 564 (1274)
Q Consensus 560 ---------------------------------------------------------------------------~qLt~ 564 (1274)
+||||
T Consensus 683 CD~~~~a~~lik~~S~~LseL~q~~l~~eR~~i~~~~i~~~y~~s~~L~~ll~~~~~d~~~~l~i~~~l~~LpLs~qlTn 762 (1429)
T KOG0970|consen 683 CDLNLAARELIKAQSYSLSELSQQILKEERKEINANEIPKMYEDSKSLTYLLEHTITDAELILQIMFRLNALPLSKQLTN 762 (1429)
T ss_pred eehHHHHHhhhccccccHHHHHHHHHhhhcccCCHhHhhhhccChHHHHHHHHHHhHHHHHHHHHHHHhccchHHHHHHH
Confidence 89999
Q ss_pred ccCchhHhHhcCchhHHHHHHHHHHHhcCCEeecCCccCcCccCCcccc--c--ccccCCCCCcccCCceeecccccccc
Q psy1361 565 VCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETG--E--ANKGKGRKKAAYSGGLVLEPKKGFYD 640 (1274)
Q Consensus 565 IaGn~~srtl~ggraeR~E~LLLhef~~~~yIlPdk~~~~~~~~~~~d~--~--~~~~~~~kk~~Y~GGlVlePk~GlYd 640 (1274)
|+||.|+|||+||||+||||+|||+||++|||+|||....+. .++.++ + +...+++++++|+||+||||+.|||+
T Consensus 763 IaGni~~RTL~G~RAeRnEylLLH~F~~~~fIvPDK~~ssk~-~~d~d~~~eg~d~~~~~KKk~kYaGGLVlePkkGlYe 841 (1429)
T KOG0970|consen 763 IAGNIWARTLQGGRAERNEYLLLHEFYKNGFIVPDKQNSSKA-QKDADETEEGADEPSKGKKKAKYAGGLVLEPKKGLYE 841 (1429)
T ss_pred HHhHHHHHHhhccchhhhhHHHHHHHHHCCccCCCccchhhh-hhhhhhhhccccccccccccccccCceeeccccchhh
Confidence 999999999999999999999999999999999999854332 222222 1 12236788899999999999999999
Q ss_pred eeEEEeeccccChhHHHHhccccccccccccCCCccccccccCCcccccCCCcHHHHHHHHHHHHHHHHHhcCCCCChHH
Q psy1361 641 KFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDL 720 (1274)
Q Consensus 641 ~~VlvLDFnSLYPSII~~yNIcptTv~~~~~~~~~~~~ip~~~~~~~~~~GILP~iL~~Lle~R~~vK~~mK~~~~~~~~ 720 (1274)
++|++||||||||||||+||||||||.+.. .+.+++|. +|.+...+||||++|+.||++|++||++||+. .+|++
T Consensus 842 ~~VLllDFNSLYPSIIQEyNICFTTv~~~~---~d~Dqlp~-lP~s~~~~GiLPr~l~~LVerRk~VK~lMK~~-~tp~~ 916 (1429)
T KOG0970|consen 842 KYVLLLDFNSLYPSIIQEYNICFTTVDRFS---VDSDQLPR-LPSSSSEQGILPRLLENLVERRKEVKKLMKQE-LTPEK 916 (1429)
T ss_pred heeEEEEccccchHHHHHhhheeeeccccc---cCcccCCC-CCCccccCCccHHHHHHHHHHHHHHHHHHhcC-CCHHH
Confidence 999999999999999999999999999842 23568998 99888999999999999999999999999995 89999
Q ss_pred HHHHHHHHHHhhccccccccCCCCCcCCCCCHHHHHHHHHHhHHHHHHHHHHHHhcCccceeccccceeeecCCCCHHHH
Q psy1361 721 LMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENLNYEVIYGDTDSLMISCNVNDYDSV 800 (1274)
Q Consensus 721 ~~~ld~rQ~ALKl~aNS~YG~lG~~~sRfy~~~lA~~IT~~GReiL~~tke~ve~~g~~VIYGDTDSImI~~~~~d~eea 800 (1274)
+.||||||+|||||||||||||||++||||++|||++||.+||+||++|+++|++||++|||||||||||++|..|+++|
T Consensus 917 ~~q~DIRQqALKLTANSMYGCLGf~~SRFyAkpLAaLVT~KGReiLm~Tk~Lve~mnl~VIYGDTDSvMInTn~td~~~a 996 (1429)
T KOG0970|consen 917 RKQLDIRQQALKLTANSMYGCLGFVNSRFYAKPLAALVTYKGREILMNTKDLVEKMNLEVIYGDTDSVMINTNSTDYEEA 996 (1429)
T ss_pred HHhhhHHHHHHhhhhccchhhcccccchhhhhhHHHHHhhhhHHHHHHHHHHHHhcCeEEEEcCCceEEeeCCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCccEEEEeeehhhHhhccccccceEEEeeecCCCceeeeeeeecceeecCChHHHHHHHHHHHHHH
Q psy1361 801 FKIGNQIKSECNKLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQ 880 (1274)
Q Consensus 801 ~kig~eI~~~VN~~~~~LeLe~E~vy~~lLLl~KKrYA~l~~~~~~dG~~~~~~evKGle~vRRD~c~l~K~~~~~vL~~ 880 (1274)
++||++|+++||++|+.||||+||||++|||++||||||+.+.++++| .+.+|+|||||||||||+|+|++++.||++
T Consensus 997 ~kig~~~k~~VNkrYk~LEIDiDgVfkrlLLlkKKKYAAL~l~~dgkg--~~~~E~KGLDmvRRDwc~Lake~g~~vLd~ 1074 (1429)
T KOG0970|consen 997 LKIGNEFKQAVNKRYKLLEIDIDGVFKRLLLLKKKKYAALTLNKDGKG--VERIEVKGLDMVRRDWCQLAKEIGKAVLDK 1074 (1429)
T ss_pred HHHHHHHHHHHHHHhhhheeehhHHHHHHHHHhhhhheeEEecCCCCC--ceeeeecccchhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999876665 567999999999999999999999999999
Q ss_pred HHccCCCCCCchHHHHHHHHHHHHHHHHHHhCCCcCcccceeeecccCCccccCCCCCchHHHHHHHHhhhCCCCCCCCC
Q psy1361 881 ILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGD 960 (1274)
Q Consensus 881 ILs~~~~~~~~~e~~ve~I~~~l~~~~~kL~~g~vpledlvI~K~LsK~pe~Y~d~~~~PHV~vAlrl~~~~G~~v~~Gd 960 (1274)
||++.+ +++++++||++|+++.++|++|.||+++|+|+++|+|+|++|++.+++|||+||+||++++++.+++||
T Consensus 1075 ILs~~~-----~ee~veaI~d~L~kI~~k~~~G~vpl~~fvI~k~LtK~Pe~Yp~~kslPhVqVALrm~~~G~~~~k~gD 1149 (1429)
T KOG0970|consen 1075 ILSDKS-----REEIVEAIHDELRKISEKLENGNVPLEKFVITKTLTKNPEAYPDGKSLPHVQVALRMNKRGKRKVKAGD 1149 (1429)
T ss_pred HHcCCC-----HHHHHHHHHHHHHHHHHHHhcCccchhheeeehhccCChhhCCCcccCcHHHHHHHHHHhcCcccccCC
Confidence 999999 999999999999999999999999999999999999999999999999999999999986669999999
Q ss_pred EEEEEEEe-CCCCCcccccccChHHHhhCCC-ccccHHHHHhccchHHHHHhccccCCCChhHHHHHhCCcccchhhhcc
Q psy1361 961 TISYIICE-DGTSEAATQRAYNIEELKNNSK-LKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRIAECLGLDTSLYRSQIK 1038 (1274)
Q Consensus 961 ~I~YVI~~-~g~~~~~~~RA~~p~e~~~~~~-l~iD~eYYl~kQI~Ppv~Rl~~pi~G~d~~~ia~~Lgld~~~y~~~~~ 1038 (1274)
+|+||||+ +|...++++|||||+|+..+++ |.||+.|||+|||||||+|||+||+|+|+++||+||||||++||.+..
T Consensus 1150 vV~yVI~~~D~~~~~As~RAyh~~e~~~~~~~l~iD~~YYLa~QIhPvV~Rlve~Iegt~a~riae~LGlDstkyr~~~~ 1229 (1429)
T KOG0970|consen 1150 VVPYVICKEDGIDNPASERAYHPDEVMPDEDNLAIDYNYYLAQQIHPVVERLVEPIEGTDAVRIAECLGLDSTKYRRHEG 1229 (1429)
T ss_pred eEEEEEecCCCCCCchhhcccChHhhCccCcceeechhhHhhhhcchhHHHHhhhhcccCHHHHHHHhCCCchhhhhhhc
Confidence 99999994 6777788899999999987544 999999999999999999999999999999999999999999998764
Q ss_pred cccccccccccc-CC-cchhhhcccCcceeeecCCccCCCcccccCcccc-CCCCcccc-cccCCCCCCCCCCCCCHHHH
Q psy1361 1039 ESIQQSEENILG-VG-EAEEVKYQFCDKFEFTCMNPSCKQVNTVEAPTRL-STHGVVFV-LDECINPECKVPPYTYLPHL 1114 (1274)
Q Consensus 1039 ~~~~~~~~~~~~-~~-~~~~~~f~~~~~~~~~C~~~~C~~~~~~~~~~~~-~~~~~~~~-~~~C~~~~C~~~~~~~~~~i 1114 (1274)
.+.+ .+...+ .+ +++.++|++|++|.+.|| .|++++.+.++|.. +.....+. .+.|. .|+..++.+.++|
T Consensus 1230 ~q~~--~~a~s~~~s~~td~~~~~~ce~~~l~Cp--tC~~~~~~~~~~~~~s~~~~~~~l~~~Ca--~Cq~~~~~~~~~i 1303 (1429)
T KOG0970|consen 1230 NQKE--NSALSPDESTLTDVERFKDCEPLTLRCP--TCSTENSRAFAVDKVSEMSRKEVLSLYCA--RCQQEPIESPASI 1303 (1429)
T ss_pred chhh--hhhhCCCcchhcchhhhccccceEEECC--CCCCcccccccccCcccchhhhHhhhcCh--hhhcCCccchHHH
Confidence 2222 222222 33 789999999999999999 99999999988873 33333344 45587 6999988889999
Q ss_pred HHHHHHHHHHHHHhhccceeeeCCCCCCCcccccccccC--CCCCCCcccceeeeecChHHHHHHHHHHHHhcchhhhhh
Q psy1361 1115 INKLSQDMNKYIVKYYEGWLKCEDPGCSDLTRRCPLGLK--TRLCTTCHKYKLHRVYTELQLYQQLSFFHYICDITKALT 1192 (1274)
Q Consensus 1115 ~nql~~~ir~~i~~yy~~~~~Cdd~~C~~~tr~~~~~~~--~~~c~~C~~g~~~~~ys~~~ly~qL~y~~~lfd~~~~~~ 1192 (1274)
.||+.++||.||++||.|||+|||++|+++||++++++. ||.|++|..|.|+++||+++|||||+||++|||.+ |+.
T Consensus 1304 ~nq~~~qir~fV~~yy~g~lvCdd~tC~~~TR~~sv~~~R~g~~C~~C~~g~l~r~Ytd~~LY~Ql~y~r~i~d~e-al~ 1382 (1429)
T KOG0970|consen 1304 TNQVERQIRCFVSLYYLGWLVCDDPTCGFRTRQQSVFGKREGPLCPGCRIGVLRREYTDKQLYNQLCYFRYILDCE-ALE 1382 (1429)
T ss_pred HHHHHHHHHHHHHHHhhhheeecCcccccccccceeeccccCccCccccccchhhhhhHHHHHHHHHHHHHHHhhH-HHh
Confidence 999999999999999999999999999999999999998 89999997799999999999999999999999999 888
Q ss_pred cCCCCC----ccCChhHHHHHHHHHHHHHHHHHhcCCceechhhhhh
Q psy1361 1193 KSDTPS----IKFDSETYMGYCKMKQHVERFLESSAYNIVDLKKLFS 1235 (1274)
Q Consensus 1193 ~~~~~~----~~~~~~~~~~~~~~~~~v~~~l~~~~~~~V~l~~lf~ 1235 (1274)
++.... ..+.++.+.+|+.+...|++||++|||+||||++||.
T Consensus 1383 k~t~~~~~~k~~~~p~~~~ayn~l~~~i~~~l~~~ay~~vdls~iFa 1429 (1429)
T KOG0970|consen 1383 KMTLAHRLQKEFLTPESIKAYNRLARTIEKYLNKNAYRYVDLSKIFA 1429 (1429)
T ss_pred hhccchhccccccCHHHHHHHHHHHHHHHHHHhhccceEechHhhcC
Confidence 776533 2567777788999999999999999999999999994
|
|
| >TIGR00592 pol2 DNA polymerase (pol2) | Back alignment and domain information |
|---|
| >PTZ00166 DNA polymerase delta catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >cd05534 POLBc_zeta DNA polymerase type-B zeta subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05532 POLBc_alpha DNA polymerase type-B alpha subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05533 POLBc_delta DNA polymerase type-B delta subfamily catalytic domain | Back alignment and domain information |
|---|
| >KOG0969|consensus | Back alignment and domain information |
|---|
| >cd05536 POLBc_B3 DNA polymerase type-B B3 subfamily catalytic domain | Back alignment and domain information |
|---|
| >KOG0968|consensus | Back alignment and domain information |
|---|
| >COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PF00136 DNA_pol_B: DNA polymerase family B Several related DNA polymerases were too dissimilar to be included | Back alignment and domain information |
|---|
| >PHA03036 DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >PRK05761 DNA polymerase I; Reviewed | Back alignment and domain information |
|---|
| >PRK05762 DNA polymerase II; Reviewed | Back alignment and domain information |
|---|
| >cd05537 POLBc_Pol_II DNA polymerase type-II subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05530 POLBc_B1 DNA polymerase type-B B1 subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd00145 POLBc DNA polymerase type-B family catalytic domain | Back alignment and domain information |
|---|
| >cd05538 POLBc_Pol_II_B DNA polymerase type-II B subfamily catalytic domain | Back alignment and domain information |
|---|
| >PHA02528 43 DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >cd05531 POLBc_B2 DNA polymerase type-B B2 subfamily catalytic domain | Back alignment and domain information |
|---|
| >cd05535 POLBc_epsilon DNA polymerase type-B epsilon subfamily catalytic domain | Back alignment and domain information |
|---|
| >PHA03334 putative DNA polymerase catalytic subunit; Provisional | Back alignment and domain information |
|---|
| >PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >smart00486 POLBc DNA polymerase type-B family | Back alignment and domain information |
|---|
| >PHA02523 43B DNA polymerase subunit B; Provisional | Back alignment and domain information |
|---|
| >KOG1798|consensus | Back alignment and domain information |
|---|
| >PHA02524 43A DNA polymerase subunit A; Provisional | Back alignment and domain information |
|---|
| >PF12254 DNA_pol_alpha_N: DNA polymerase alpha subunit p180 N terminal; InterPro: IPR024647 This entry represents the N-terminal domain of DNA polymerase alpha catalytic subunit (the DNA polymerase alpha complex is composed of four subunits) | Back alignment and domain information |
|---|
| >PHA02563 DNA polymerase; Provisional | Back alignment and domain information |
|---|
| >PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included | Back alignment and domain information |
|---|
| >TIGR00592 pol2 DNA polymerase (pol2) | Back alignment and domain information |
|---|
| >PF08490 DUF1744: Domain of unknown function (DUF1744); InterPro: IPR013697 This domain is found on the catalytic subunit of DNA polymerase epsilon | Back alignment and domain information |
|---|
| >PHA02735 putative DNA polymerase type B; Provisional | Back alignment and domain information |
|---|
| >KOG1798|consensus | Back alignment and domain information |
|---|
| >PF03175 DNA_pol_B_2: DNA polymerase type B, organellar and viral; InterPro: IPR004868 This entry is found in DNA polymerase type B proteins | Back alignment and domain information |
|---|
| >PHA03144 helicase-primase primase subunit; Provisional | Back alignment and domain information |
|---|
| >PF03175 DNA_pol_B_2: DNA polymerase type B, organellar and viral; InterPro: IPR004868 This entry is found in DNA polymerase type B proteins | Back alignment and domain information |
|---|
| >PHA03181 helicase-primase primase subunit; Provisional | Back alignment and domain information |
|---|
| >PF14205 Cys_rich_KTR: Cysteine-rich KTR | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1274 | ||||
| 4fvm_A | 910 | Crystal Structure Of Yeast Dna Polymerase Alpha Len | 2e-89 | ||
| 4fyd_A | 910 | Crystal Structure Of Yeast Dna Polymerase Alpha Bou | 6e-89 | ||
| 4b08_A | 910 | Crystal Structure Of Yeast Dna Polymerase Alpha, Se | 1e-84 | ||
| 4ahc_A | 775 | Crystal Structure Of An Evolved Replicating Dna Pol | 2e-38 | ||
| 2jgu_A | 775 | Crystal Structure Of Dna-directed Dna Polymerase Le | 3e-38 | ||
| 3a2f_A | 775 | Crystal Structure Of Pyrococcus Furiosus Dna Polyme | 5e-38 | ||
| 1qht_A | 775 | Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon | 2e-37 | ||
| 2vwk_A | 773 | Uracil Recognition In Archaeal Dna Polymerases Capt | 8e-36 | ||
| 1tgo_A | 773 | Thermostable B Type Dna Polymerase From Thermococcu | 9e-36 | ||
| 2xhb_A | 773 | Crystal Structure Of Dna Polymerase From Thermococc | 9e-36 | ||
| 2vwj_A | 773 | Uracil Recognition In Archaeal Dna Polymerases Capt | 9e-36 | ||
| 1wn7_A | 774 | Crystal Structure Of Archaeal Family B Dna Polymera | 3e-32 | ||
| 1wns_A | 774 | Crystal Structure Of Family B Dna Polymerase From H | 3e-32 | ||
| 4fm2_A | 793 | Pyrococcus Abyssi B Family Dna Polymerase (Triple M | 2e-31 | ||
| 4flt_A | 793 | Pyrococcus Abyssi B Family Dna Polymerase Bound To | 2e-31 | ||
| 3iay_A | 919 | Ternary Complex Of Dna Polymerase Delta Length = 91 | 2e-29 | ||
| 1qqc_A | 773 | Crystal Structure Of An Archaebacterial Dna Polymer | 2e-28 | ||
| 3k5l_A | 786 | Crystal Structure Of E.Coli Pol Ii-Abasic Dna-Datp | 6e-24 | ||
| 1q8i_A | 783 | Crystal Structure Of Escherichia Coli Dna Polymeras | 8e-24 | ||
| 1d5a_A | 733 | Crystal Structure Of An Archaebacterial Dna Polymer | 2e-23 | ||
| 2gv9_A | 1193 | Crystal Structure Of The Herpes Simplex Virus Type | 1e-20 | ||
| 1s5j_A | 847 | Insight In Dna Replication: The Crystal Structure O | 1e-14 | ||
| 3kd1_E | 913 | Closed Binary Complex Of An Rb69 Gp43 Fingers Domai | 7e-09 | ||
| 2dy4_A | 903 | Crystal Structure Of Rb69 Gp43 In Complex With Dna | 4e-07 | ||
| 3l8b_A | 906 | Crystal Structure Of A Replicative Dna Polymerase B | 1e-06 | ||
| 3lds_A | 903 | Crystal Structure Of Rb69 Gp43 With Dna And Datp Op | 1e-06 | ||
| 1ig9_A | 903 | Structure Of The Replicating Complex Of A Pol Alpha | 1e-06 | ||
| 3sq1_A | 901 | Rb69 Dna Polymerase Ternary Complex With Dupcpp Opp | 1e-06 | ||
| 2dtu_A | 896 | Crystal Structure Of The Beta Hairpin Loop Deletion | 1e-06 | ||
| 1q9y_A | 906 | Crystal Structure Of Enterobacteria Phage Rb69 Gp43 | 1e-06 | ||
| 3sq2_A | 902 | Rb69 Dna Polymerase Ternary Complex With Dttp Oppos | 1e-06 | ||
| 1waf_A | 903 | Dna Polymerase From Bacteriophage Rb69 Length = 903 | 1e-06 | ||
| 3cq8_A | 903 | Ternary Complex Of The L415f Mutant Rb69 Exo(-)poly | 3e-06 | ||
| 3sun_A | 895 | Rb69 Dna Polymerase (Y567a) Ternary Complex With Dt | 1e-05 | ||
| 3suo_A | 900 | Rb69 Dna Polymerase (Y567a) Ternary Complex With Dt | 1e-05 | ||
| 3suq_A | 897 | Rb69 Dna Polymerase (Y567a) Ternary Complex With Dc | 1e-05 | ||
| 3lzi_A | 903 | Rb69 Dna Polymerase (Y567a) Ternary Complex With Da | 1e-05 | ||
| 3rwu_A | 901 | Rb69 Dna Polymerase (Y567a) Ternary Complex With Da | 1e-05 | ||
| 3qep_A | 903 | Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPL | 3e-05 | ||
| 4dtj_A | 901 | Rb69 Dna Polymerase Ternary Complex With Dttp Oppos | 3e-05 | ||
| 3scx_A | 903 | Rb69 Dna Polymerase Triple Mutant(L561aS565GY567A) | 3e-05 | ||
| 3cfo_A | 909 | Triple Mutant Apo Structure Length = 909 | 3e-05 | ||
| 3ne6_A | 903 | Rb69 Dna Polymerase (S565gY567A) TERNARY COMPLEX WI | 3e-05 | ||
| 3spz_A | 903 | Dna Polymerase(L415aL561AS565GY567A) TERNARY COMPLE | 1e-04 | ||
| 3spy_A | 901 | Rb69 Dna Polymerase(L415aL561AS565GY567A) TERNARY C | 1e-04 | ||
| 3flo_B | 206 | Crystal Structure Of The Carboxyl-Terminal Domain O | 1e-04 |
| >pdb|4FVM|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Length = 910 | Back alignment and structure |
|
| >pdb|4FYD|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha Bound To Dna/rna And Dgtp Length = 910 | Back alignment and structure |
| >pdb|4B08|A Chain A, Crystal Structure Of Yeast Dna Polymerase Alpha, Selenomethionine Protein Length = 910 | Back alignment and structure |
| >pdb|4AHC|A Chain A, Crystal Structure Of An Evolved Replicating Dna Polymerase Length = 775 | Back alignment and structure |
| >pdb|2JGU|A Chain A, Crystal Structure Of Dna-directed Dna Polymerase Length = 775 | Back alignment and structure |
| >pdb|3A2F|A Chain A, Crystal Structure Of Pyrococcus Furiosus Dna PolymerasePCNA Monomer Mutant Complex Length = 775 | Back alignment and structure |
| >pdb|1QHT|A Chain A, Dna Polymerase From Thermococcus Sp. 9on-7 Archaeon Length = 775 | Back alignment and structure |
| >pdb|2VWK|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By X-Ray Crystallography. V93q Polymerase Variant Length = 773 | Back alignment and structure |
| >pdb|1TGO|A Chain A, Thermostable B Type Dna Polymerase From Thermococcus Gorgonarius Length = 773 | Back alignment and structure |
| >pdb|2XHB|A Chain A, Crystal Structure Of Dna Polymerase From Thermococcus Gorgonarius In Complex With Hypoxanthine-Containing Dna Length = 773 | Back alignment and structure |
| >pdb|2VWJ|A Chain A, Uracil Recognition In Archaeal Dna Polymerases Captured By X-Ray Crystallography Length = 773 | Back alignment and structure |
| >pdb|1WN7|A Chain A, Crystal Structure Of Archaeal Family B Dna Polymerase Mutant Length = 774 | Back alignment and structure |
| >pdb|1WNS|A Chain A, Crystal Structure Of Family B Dna Polymerase From Hyperthermophilic Archaeon Pyrococcus Kodakaraensis Kod1 Length = 774 | Back alignment and structure |
| >pdb|4FM2|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase (Triple Mutant) Bound To A Dsdna, In Edition Mode Length = 793 | Back alignment and structure |
| >pdb|4FLT|A Chain A, Pyrococcus Abyssi B Family Dna Polymerase Bound To A Dsdna, In Edition Mode Length = 793 | Back alignment and structure |
| >pdb|3IAY|A Chain A, Ternary Complex Of Dna Polymerase Delta Length = 919 | Back alignment and structure |
| >pdb|1QQC|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase D.Tok Length = 773 | Back alignment and structure |
| >pdb|3K5L|A Chain A, Crystal Structure Of E.Coli Pol Ii-Abasic Dna-Datp Lt(0, 3) Ternary Complex Length = 786 | Back alignment and structure |
| >pdb|1Q8I|A Chain A, Crystal Structure Of Escherichia Coli Dna Polymerase Ii Length = 783 | Back alignment and structure |
| >pdb|1D5A|A Chain A, Crystal Structure Of An Archaebacterial Dna Polymerase D.Tok. Deposition Of Second Native Structure At 2.4 Angstrom Length = 733 | Back alignment and structure |
| >pdb|2GV9|A Chain A, Crystal Structure Of The Herpes Simplex Virus Type 1 Dna Polymerase Length = 1193 | Back alignment and structure |
| >pdb|1S5J|A Chain A, Insight In Dna Replication: The Crystal Structure Of Dna Polymerase B1 From The Archaeon Sulfolobus Solfataricus Length = 847 | Back alignment and structure |
| >pdb|3KD1|E Chain E, Closed Binary Complex Of An Rb69 Gp43 Fingers Domain Mutant Complexed With An Acyclic Gmp Terminated Primer Template Pair. Length = 913 | Back alignment and structure |
| >pdb|2DY4|A Chain A, Crystal Structure Of Rb69 Gp43 In Complex With Dna Containing Thymine Glycol Length = 903 | Back alignment and structure |
| >pdb|3L8B|A Chain A, Crystal Structure Of A Replicative Dna Polymerase Bound To The Oxidized Guanine Lesion Guanidinohydantoin Length = 906 | Back alignment and structure |
| >pdb|3LDS|A Chain A, Crystal Structure Of Rb69 Gp43 With Dna And Datp Opposite 8- Length = 903 | Back alignment and structure |
| >pdb|1IG9|A Chain A, Structure Of The Replicating Complex Of A Pol Alpha Family Dna Polymerase Length = 903 | Back alignment and structure |
| >pdb|3SQ1|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dupcpp Opposite Da Length = 901 | Back alignment and structure |
| >pdb|2DTU|A Chain A, Crystal Structure Of The Beta Hairpin Loop Deletion Variant Of Rb69 Gp43 In Complex With Dna Containing An Abasic Site Analog Length = 896 | Back alignment and structure |
| >pdb|1Q9Y|A Chain A, Crystal Structure Of Enterobacteria Phage Rb69 Gp43 Dna Polymerase Complexed With 8-Oxoguanosine Containing Dna Length = 906 | Back alignment and structure |
| >pdb|3SQ2|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp Opposite 2ap (At Rich Sequence) Length = 902 | Back alignment and structure |
| >pdb|1WAF|A Chain A, Dna Polymerase From Bacteriophage Rb69 Length = 903 | Back alignment and structure |
| >pdb|3CQ8|A Chain A, Ternary Complex Of The L415f Mutant Rb69 Exo(-)polymerase Length = 903 | Back alignment and structure |
| >pdb|3SUN|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dttp Opposite 2ap (At Rich Sequence) Length = 895 | Back alignment and structure |
| >pdb|3SUO|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dttp Opposite 2ap (Gc Rich Sequence) Length = 900 | Back alignment and structure |
| >pdb|3SUQ|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Dctp Opposite 2ap (At Rich Sequence) Length = 897 | Back alignment and structure |
| >pdb|3LZI|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Datp Opposite 7,8- Dihydro-8-Oxoguanine Length = 903 | Back alignment and structure |
| >pdb|3RWU|A Chain A, Rb69 Dna Polymerase (Y567a) Ternary Complex With Datp Opposite Difluorotoluene Nucleoside Length = 901 | Back alignment and structure |
| >pdb|3QEP|A Chain A, Rb69 Dna Polymerase (L561aS565GY567A) TERNARY COMPLEX WITH DTTP Opposite Difluorotoluene Nucleoside Length = 903 | Back alignment and structure |
| >pdb|4DTJ|A Chain A, Rb69 Dna Polymerase Ternary Complex With Dttp Opposite An Abasic Site And DdtDA AS THE PENULTIMATE BASE-Pair Length = 901 | Back alignment and structure |
| >pdb|3SCX|A Chain A, Rb69 Dna Polymerase Triple Mutant(L561aS565GY567A) TERNARY COMPLEX With Dupnpp And A Deoxy-Terminated Primer In The Presence Of Ca2+ Length = 903 | Back alignment and structure |
| >pdb|3CFO|A Chain A, Triple Mutant Apo Structure Length = 909 | Back alignment and structure |
| >pdb|3NE6|A Chain A, Rb69 Dna Polymerase (S565gY567A) TERNARY COMPLEX WITH DCTP OPPOSITE Dg Length = 903 | Back alignment and structure |
| >pdb|3SPZ|A Chain A, Dna Polymerase(L415aL561AS565GY567A) TERNARY COMPLEX WITH DUPCPP Opposite Da (Ca2+) Length = 903 | Back alignment and structure |
| >pdb|3SPY|A Chain A, Rb69 Dna Polymerase(L415aL561AS565GY567A) TERNARY COMPLEX WITH Dupcpp Opposite Da Length = 901 | Back alignment and structure |
| >pdb|3FLO|B Chain B, Crystal Structure Of The Carboxyl-Terminal Domain Of Yeast Dna Polymerase Alpha In Complex With Its B Subunit Length = 206 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Length = 775 | Back alignment and structure |
|---|
Score = 476 bits (1227), Expect = e-152
Identities = 128/455 (28%), Positives = 209/455 (45%), Gaps = 41/455 (9%)
Query: 562 ITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGR 621
++ + G L E+ LL ++++ + P+K + R
Sbjct: 333 LSRLIGQSLWDVSRSSTGNLVEWFLLRKAYKRNELAPNKPD-------------ERELAR 379
Query: 622 KKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCE 681
++ Y+GG V EP++G +D I+ +DF SLYPSII +N+ T+ ++ D+
Sbjct: 380 RRGGYAGGYVKEPERGLWDN-IVYLDFRSLYPSIIITHNVSPDTLNREGCKEYDVAPEVG 438
Query: 682 YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGC 741
+ G +PS + L+E R+++K MK + D RQ+A+K+ ANS YG
Sbjct: 439 HKFCKDFP-GFIPSLLGDLLEERQKIKRKMKAT-VDPLEKKLLDYRQRAIKILANSFYGY 496
Query: 742 LGFPNSRFFAQPLAALVTAKGREILLNTKSLV-ENLNYEVIYGDTDSLMISCNVNDYDSV 800
G+ +R++ + A VTA GRE + + E ++V+Y DTD L + D ++V
Sbjct: 497 YGYAKARWYCKECAESVTAWGREYIEMVIRELEEKFGFKVLYADTDGLHATIPGADAETV 556
Query: 801 FKIGNQIKSECN-KLYKQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGV 859
K + N KL LEL+ +G Y + KKKYA + GK+ +G+
Sbjct: 557 KKKAKEFLKYINPKLPGLLELEYEGFYVRGFFVTKKKYAVID----EEGKI----TTRGL 608
Query: 860 DVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTL 919
++VRRDWS++A E V+ IL ++ +K++ L VP
Sbjct: 609 EIVRRDWSEIAKETQARVLEAILKHGD---------VEEAVRIVKEVTEKLSKYEVPPEK 659
Query: 920 LEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEAATQRA 979
L I +Q+T+ +Y PHV VA RL K++ G ISYI+ + RA
Sbjct: 660 LVIHEQITRDLRDYK--ATGPHVAVAKRLAARG-VKIRPGTVISYIVLKGSGR--IGDRA 714
Query: 980 YNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPI 1014
+E K + D YY+ Q+ P V R+L+
Sbjct: 715 IPADEFDPT-KHRYDAEYYIENQVLPAVERILKAF 748
|
| >3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Length = 919 | Back alignment and structure |
|---|
| >3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Length = 919 | Back alignment and structure |
|---|
| >1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Length = 847 | Back alignment and structure |
|---|
| >1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Length = 847 | Back alignment and structure |
|---|
| >3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Length = 786 | Back alignment and structure |
|---|
| >3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Length = 786 | Back alignment and structure |
|---|
| >2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Length = 1193 | Back alignment and structure |
|---|
| >3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc-binding motif, DNA replication; HET: DNA; 2.50A {Saccharomyces cerevisiae} Length = 206 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 3spz_A* 3ne6_A* 3nhg_A* 3si6_A* 3scx_A* 3sjj_A* 3snn_A* 3ngi_A* 3lzi_A* 3lzj_A* 3ndk_A* ... Length = 903 | Back alignment and structure |
|---|
| >2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A* Length = 575 | Back alignment and structure |
|---|
| >1n5g_A 38-MER of DNA polymerase alpha catalytic subunit; zinc finger protein, DNA binding domain, transferase; NMR {Synthetic} SCOP: g.67.1.1 Length = 38 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1274 | |||
| 3iay_A | 919 | DNA polymerase delta catalytic subunit; protein-DN | 100.0 | |
| 2gv9_A | 1193 | DNA polymerase; polymerase alpha fold, transferase | 100.0 | |
| 1qht_A | 775 | Protein (DNA polymerase); archaea, hyperthermostab | 100.0 | |
| 3k59_A | 786 | POL II, DNA polymerase II; protein-DNA complex, DN | 100.0 | |
| 3qex_A | 903 | DNA polymerase, GP43; difluorotoluene nucleoside; | 100.0 | |
| 1s5j_A | 847 | DNA polymerase I; replication, disulfide bonds, tr | 100.0 | |
| 3flo_B | 206 | DNA polymerase alpha catalytic subunit A; protein- | 100.0 | |
| 2py5_A | 575 | DNA polymerase; protein-DNA complex, replication, | 99.79 | |
| 1n5g_A | 38 | 38-MER of DNA polymerase alpha catalytic subunit; | 98.19 | |
| 1k0p_A | 31 | DNA polymerase alpha catalytic subunit; zinc finge | 96.8 | |
| 1noy_A | 388 | Protein (DNA polymerase (E.C.2.7.7.7)); exonucleas | 95.33 |
| >3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-95 Score=922.43 Aligned_cols=420 Identities=28% Similarity=0.443 Sum_probs=377.1
Q ss_pred chhhhccCchhHhHhcCchhHHHHHHHHHHHhcCCEeecCCccCcCccCCcccccccccCCCCCcccCCceeeccccccc
Q psy1361 560 IRITNVCGNVLSRTLMGGRSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFY 639 (1274)
Q Consensus 560 ~qLt~IaGn~~srtl~ggraeR~E~LLLhef~~~~yIlPdk~~~~~~~~~~~d~~~~~~~~~kk~~Y~GGlVlePk~GlY 639 (1274)
.++++|+|++|.+++++|++.|+|++|+|+||++|||+|++... .+..+|+||+|++|++|+|
T Consensus 472 ~elArl~Gi~~~~vl~rG~qi~ves~Llr~a~~~~~ilP~~~~~-----------------~~~~~y~Gg~V~eP~~G~y 534 (919)
T 3iay_A 472 TEMARVTGVPFSYLLARGQQIKVVSQLFRKCLEIDTVIPNMQSQ-----------------ASDDQYEGATVIEPIRGYY 534 (919)
T ss_dssp HHHHHHHCCCHHHHHHSCHHHHHHHHHHHHHHHTTEECBCCCCC-----------------CCSSCCCCCCBCCCCCEEE
T ss_pred HHHHHHcCCCHHHhhcccchHHHHHHHHHHHhhCCeeCCCcccc-----------------cccccCCCCEEecCCCCce
Confidence 57899999999999999999999999999999999999987521 1246799999999999999
Q ss_pred ceeEEEeeccccChhHHHHhccccccccccccC-------CCcccccccc--CCcccccCCCcHHHHHHHHHHHHHHHHH
Q psy1361 640 DKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQ-------DSDITTLCEY--LPEHQVDTGILPSEIKKLVESRRQVKAL 710 (1274)
Q Consensus 640 d~~VlvLDFnSLYPSII~~yNIcptTv~~~~~~-------~~~~~~ip~~--~~~~~~~~GILP~iL~~Lle~R~~vK~~ 710 (1274)
++||++|||+|||||||++|||||||+++.... +++....|.+ |...+.+.||||++|+.|++.|+++|+.
T Consensus 535 ~~pV~~lDF~SLYPSIi~~~Nlc~~Tl~~~~~~~~~~~~~~~~~~~~p~g~~f~~~~~~~gilp~~l~~ll~~R~~~K~~ 614 (919)
T 3iay_A 535 DVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNLKIDEDYVITPNGDYFVTTKRRRGILPIILDELISARKRAKKD 614 (919)
T ss_dssp CSCEEEEEETTHHHHHHHHTTCSGGGEECHHHHHHTTCCBTTTEEECTTSCEEECTTTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred eccEEEEEecccchHHHHhcCcCcccccccchhhhcCCCCCcceeeCCCCcEEeccCCCCCchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999875321 0111222331 3334568999999999999999999999
Q ss_pred hcCCCCChHHHHHHHHHHHHhhccccccccCCCCCcCCCCCHHHHHHHHHHhHHHHHHHHHHHHhc---------Cccce
Q psy1361 711 MKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVENL---------NYEVI 781 (1274)
Q Consensus 711 mK~~~~~~~~~~~ld~rQ~ALKl~aNS~YG~lG~~~sRfy~~~lA~~IT~~GReiL~~tke~ve~~---------g~~VI 781 (1274)
||+ ..+|.++.+||.+|+|||++|||+|||+|++++||||.++|++||+.||++|++|++++|+. |++||
T Consensus 615 mk~-~~d~~~~~~ld~~Q~AlKi~~NS~YG~~G~~~~r~~~~~iA~siT~~GR~~l~~t~~~ie~~~~~~~g~~~~~~Vi 693 (919)
T 3iay_A 615 LRD-EKDPFKRDVLNGRQLALKISANSVYGFTGATVGKLPCLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVV 693 (919)
T ss_dssp HHT-CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGTCSSCCEEE
T ss_pred Hhh-cCChHHHHHHHHHHHhhcccccccccccccccCccCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeEEE
Confidence 998 57899999999999999999999999999999999999999999999999999999999985 89999
Q ss_pred eccccceeeecCCCCHHHHHHHHHHHHHHHhhcC-ccEEEEeeehhhHhhccccccceEEEeeecCCCceeeeeeeecce
Q psy1361 782 YGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY-KQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVD 860 (1274)
Q Consensus 782 YGDTDSImI~~~~~d~eea~kig~eI~~~VN~~~-~~LeLe~E~vy~~lLLl~KKrYA~l~~~~~~dG~~~~~~evKGle 860 (1274)
|||||||||+++..+.++++++|++++++||+.+ .+|+||+|++|.++||++||||||+.+++. ++ ..++++||+|
T Consensus 694 YGDTDSvfv~~~~~~~~~~~~~g~~~~~~v~~~~~~~i~le~E~vy~~~ll~~KKrYag~~~~~~-~~--~~~~~~KGie 770 (919)
T 3iay_A 694 YGDTDSVMVKFGTTDLKEAMDLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNP-DK--FDKLDQKGLA 770 (919)
T ss_dssp ECBSSEEEEECSCSCHHHHHHHHHHHHHHHHTTSCTTCCEEEEEEEEEEEEEETTEEEEEEESSS-SS--CCEEEEESSG
T ss_pred EEcCCeeEEEcCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEEeeeehhhhhhcccceEEEEeccC-CC--CceEEEEeEE
Confidence 9999999999999999999999999999999987 489999999999999999999999987743 21 2367999999
Q ss_pred eecCChHHHHHHHHHHHHHHHHccCCCCCCchHHHHHHHHHHHHHHHHHHhCCCcCcccceeeecccCCccccCCCCCch
Q psy1361 861 VVRRDWSQLASEAGKFVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALP 940 (1274)
Q Consensus 861 ~vRRD~c~l~K~~~~~vL~~ILs~~~~~~~~~e~~ve~I~~~l~~~~~kL~~g~vpledlvI~K~LsK~pe~Y~d~~~~P 940 (1274)
+||||||+|+|++++++|+.||.+++ . +.++++++++..+|++|++|+++|+|+|+|+| +|+++ +|
T Consensus 771 ~vRrD~~~~~k~~~~~~l~~ll~~~~-----~----~~~~~~~~~~~~~l~~~~~~~~~lvi~k~l~k---~Y~~~--~p 836 (919)
T 3iay_A 771 SVRRDSCSLVSIVMNKVLKKILIERN-----V----DGALAFVRETINDILHNRVDISKLIISKTLAP---NYTNP--QP 836 (919)
T ss_dssp GGCTTSCHHHHHHHHHHHHHHHTTCC-----H----HHHHHHHHHHHHHHHTTCSCGGGGCEEEECCS---CCSSC--CH
T ss_pred EEeCCchHHHHHHHHHHHHHHHcCCC-----H----HHHHHHHHHHHHHHHcCCCCHHHeEEeeeccc---CCCCC--Ch
Confidence 99999999999999999999999998 4 45667888889999999999999999999999 89853 79
Q ss_pred HHHHHHHHhhhCCCCCCCCCEEEEEEEeCCCCCcccccccChHHHhhCCCccccHHHHHhccchHHHHHhccccCCC
Q psy1361 941 HVQVALRLNNTNSKKLKQGDTISYIICEDGTSEAATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGT 1017 (1274)
Q Consensus 941 HV~vAlrl~~~~G~~v~~Gd~I~YVI~~~g~~~~~~~RA~~p~e~~~~~~l~iD~eYYl~kQI~Ppv~Rl~~pi~G~ 1017 (1274)
||+||+||+++.|..+++||+|+|||+ + ++.++.+||++|.++.. ++++||++|||++||+||+.|||+||.|+
T Consensus 837 hv~~A~r~~~~~~~~~~~G~rI~YVi~-g-~~~~~~~ra~~p~~~~~-~~~~iD~~yYi~~qi~ppl~Ri~~~i~g~ 910 (919)
T 3iay_A 837 HAVLAERMKRREGVGPNVGDRVDYVII-G-GNDKLYNRAEDPLFVLE-NNIQVDSRYYLTNQLQNPIISIVAPIIGD 910 (919)
T ss_dssp HHHHHHHHHHHHSCCCCTTSEEEEEEB-C-SSSCGGGCEECHHHHHH-TTCCBCHHHHHHHTTHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHhcCCCCCCCCEEEEEEE-C-CCCchhhhccCHHHHhc-cCCCCCHHHHHHhccHHHHHHHHHHhcCC
Confidence 999999998755889999999999999 4 66678999999999874 57999999999999999999999999996
|
| >2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* | Back alignment and structure |
|---|
| >1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A | Back alignment and structure |
|---|
| >3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* | Back alignment and structure |
|---|
| >3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ... | Back alignment and structure |
|---|
| >1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 | Back alignment and structure |
|---|
| >3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A* | Back alignment and structure |
|---|
| >1n5g_A 38-MER of DNA polymerase alpha catalytic subunit; zinc finger protein, DNA binding domain, transferase; NMR {Synthetic} SCOP: g.67.1.1 | Back alignment and structure |
|---|
| >1k0p_A DNA polymerase alpha catalytic subunit; zinc finger protein, DNA binding domain, transferase; HET: DNA; NMR {Synthetic} SCOP: g.67.1.1 PDB: 1k18_A* | Back alignment and structure |
|---|
| >1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1274 | ||||
| d1tgoa2 | 426 | e.8.1.1 (A:348-773) Family B DNA polymerase {Archa | 7e-61 | |
| d1q8ia2 | 394 | e.8.1.1 (A:390-783) Family B DNA polymerase {Esche | 7e-60 | |
| d1s5ja2 | 415 | e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfo | 2e-59 | |
| d1ih7a2 | 528 | e.8.1.1 (A:376-903) Family B DNA polymerase {Bacte | 7e-27 | |
| d2py5a2 | 388 | e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacterio | 1e-12 | |
| d1q8ia1 | 388 | c.55.3.5 (A:2-389) Exonuclease domain of family B | 5e-04 |
| >d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Length = 426 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: Family B DNA polymerase species: Archaeon Thermococcus gorgonarius [TaxId: 71997]
Score = 213 bits (542), Expect = 7e-61
Identities = 125/439 (28%), Positives = 200/439 (45%), Gaps = 41/439 (9%)
Query: 578 RSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKG 637
E+ LL +E++ + P+K + R++ +Y+GG V EP++G
Sbjct: 2 TGNLVEWFLLRKAYERNELAPNKPDEREL-------------ARRRESYAGGYVKEPERG 48
Query: 638 FYDKFIILMDFNSLYPSIIQEYNICFTTIPVRMLQDSDITTLCEYLPEHQVDTGILPSEI 697
++ I+ +DF SLYPSII +N+ T+ ++ D+ + G +PS +
Sbjct: 49 LWEN-IVYLDFRSLYPSIIITHNVSPDTLNREGCEEYDVAPQVGHKFCKDFP-GFIPSLL 106
Query: 698 KKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTANSMYGCLGFPNSRFFAQPLAAL 757
L+E R++VK MK D RQ+A+K+ ANS YG G+ +R++ + A
Sbjct: 107 GDLLEERQKVKKKMKATI-DPIEKKLLDYRQRAIKILANSFYGYYGYAKARWYCKECAES 165
Query: 758 VTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNK-LY 815
VTA GR+ + T +E ++V+Y DTD + D ++V K + N L
Sbjct: 166 VTAWGRQYIETTIREIEEKFGFKVLYADTDGFFATIPGADAETVKKKAKEFLDYINAKLP 225
Query: 816 KQLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGK 875
LEL+ +G YK + KKKYA +G+++VRRDWS++A E
Sbjct: 226 GLLELEYEGFYKRGFFVTKKKYAV--------IDEEDKITTRGLEIVRRDWSEIAKETQA 277
Query: 876 FVISQILDEQSYTDYSLDDRLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTD 935
V+ IL ++ +K++ L VP L I +Q+T+ ++Y
Sbjct: 278 RVLEAILK---------HGDVEEAVRIVKEVTEKLSKYEVPPEKLVIYEQITRDLKDY-- 326
Query: 936 RKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEAATQRAYNIEELKNNSKLKIDV 995
+ PHV VA RL K + G ISYI+ + RA +E K K D
Sbjct: 327 KATGPHVAVAKRLAARGIKI-RPGTVISYIVLKGS--GRIGDRAIPFDEFDPA-KHKYDA 382
Query: 996 NYYLSQQIHPVVTRLLEPI 1014
YY+ Q+ P V R+L
Sbjct: 383 EYYIENQVLPAVERILRAF 401
|
| >d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} Length = 394 | Back information, alignment and structure |
|---|
| >d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} Length = 415 | Back information, alignment and structure |
|---|
| >d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]} Length = 528 | Back information, alignment and structure |
|---|
| >d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} Length = 388 | Back information, alignment and structure |
|---|
| >d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} Length = 388 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1274 | |||
| d1tgoa2 | 426 | Family B DNA polymerase {Archaeon Thermococcus gor | 100.0 | |
| d1s5ja2 | 415 | Family B DNA polymerase {Sulfolobus solfataricus [ | 100.0 | |
| d1q8ia2 | 394 | Family B DNA polymerase {Escherichia coli [TaxId: | 100.0 | |
| d1ih7a2 | 528 | Family B DNA polymerase {Bacteriophage RB69 [TaxId | 100.0 | |
| d2py5a2 | 388 | phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: | 99.89 | |
| d1k18a_ | 31 | Zinc finger domain of DNA polymerase-alpha {Human | 97.91 | |
| d1q8ia1 | 388 | Exonuclease domain of family B DNA polymerases {Es | 97.21 |
| >d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon Thermococcus gorgonarius [TaxId: 71997]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: DNA/RNA polymerases superfamily: DNA/RNA polymerases family: DNA polymerase I domain: Family B DNA polymerase species: Archaeon Thermococcus gorgonarius [TaxId: 71997]
Probab=100.00 E-value=1.8e-81 Score=736.31 Aligned_cols=404 Identities=31% Similarity=0.503 Sum_probs=356.2
Q ss_pred hhHHHHHHHHHHHhcCCEeecCCccCcCccCCcccccccccCCCCCcccCCceeecccccccceeEEEeeccccChhHHH
Q psy1361 578 RSERNEFLLLHAFHEKSYVLPDKQYGKNKKEGEETGEANKGKGRKKAAYSGGLVLEPKKGFYDKFIILMDFNSLYPSIIQ 657 (1274)
Q Consensus 578 raeR~E~LLLhef~~~~yIlPdk~~~~~~~~~~~d~~~~~~~~~kk~~Y~GGlVlePk~GlYd~~VlvLDFnSLYPSII~ 657 (1274)
.+.++|++|+|+++++|+++|++..... ..++..+|+||+|++|++|+|++ |++|||+|||||||+
T Consensus 2 ~g~~ve~~~~~~~~~~~~~~p~~~~~~~-------------~~~~~~~y~Gg~V~~p~~G~~~~-v~~lDf~SLYPsii~ 67 (426)
T d1tgoa2 2 TGNLVEWFLLRKAYERNELAPNKPDERE-------------LARRRESYAGGYVKEPERGLWEN-IVYLDFRSLYPSIII 67 (426)
T ss_dssp HHHHHHHHHHHHHHHTTBCCCCCCCHHH-------------HHHCCCCCCCCCEECCCCSEEEE-EEEEEESSHHHHHHH
T ss_pred chHHHHHHHHHHHHHCCEEeccCCcccc-------------ccccccCcCCceEccCCCCcCCC-eEEEEccchhHHHHH
Confidence 4678999999999999999998753210 12346789999999999999975 999999999999999
Q ss_pred HhccccccccccccCCCccccccc-cCCcccccCCCcHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHhhcccc
Q psy1361 658 EYNICFTTIPVRMLQDSDITTLCE-YLPEHQVDTGILPSEIKKLVESRRQVKALMKQPNLSSDLLMQYDIRQKALKLTAN 736 (1274)
Q Consensus 658 ~yNIcptTv~~~~~~~~~~~~ip~-~~~~~~~~~GILP~iL~~Lle~R~~vK~~mK~~~~~~~~~~~ld~rQ~ALKl~aN 736 (1274)
+|||||+|+++..+. +....|. +..+...++||||.+|+.|++.|+++|++||. ..++.++..||.+|+|+||++|
T Consensus 68 ~~Ni~p~T~~~~~~~--~~~~~~~~g~~~~~~~~Gilp~~l~~l~~~R~~~K~~~k~-~~~~~~~~~~d~~Q~a~Ki~~N 144 (426)
T d1tgoa2 68 THNVSPDTLNREGCE--EYDVAPQVGHKFCKDFPGFIPSLLGDLLEERQKVKKKMKA-TIDPIEKKLLDYRQRAIKILAN 144 (426)
T ss_dssp HTTCSTTTBTCTTCS--SEEECTTTCCEEECSSCCHHHHHHHHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHHHT
T ss_pred HhCCChhhcCCCCcc--ccccCCCCCceEeccCCCchHHHHHHHHHHHHHhhhhhhh-ccchHHHHHHHHHHHHHHHhhh
Confidence 999999999887652 2233333 12233568999999999999999999999998 4688999999999999999999
Q ss_pred ccccCCCCCcCCCCCHHHHHHHHHHhHHHHHHHHHHHHh-cCccceeccccceeeecCCCCHHHHHHHHHHHHHHHhhcC
Q psy1361 737 SMYGCLGFPNSRFFAQPLAALVTAKGREILLNTKSLVEN-LNYEVIYGDTDSLMISCNVNDYDSVFKIGNQIKSECNKLY 815 (1274)
Q Consensus 737 S~YG~lG~~~sRfy~~~lA~~IT~~GReiL~~tke~ve~-~g~~VIYGDTDSImI~~~~~d~eea~kig~eI~~~VN~~~ 815 (1274)
|+|||+|++++|||+.++|++||++||++|+.+++++++ +|++|||||||||||.++..+.+++.++++++.+.||+.+
T Consensus 145 S~YG~~G~~~~~~~~~~~A~~iT~~GR~~i~~~~~~i~~~~g~~ViYgDTDSi~v~~~~~~~~~~~~~~~~~~~~i~~~~ 224 (426)
T d1tgoa2 145 SFYGYYGYAKARWYCKECAESVTAWGRQYIETTIREIEEKFGFKVLYADTDGFFATIPGADAETVKKKAKEFLDYINAKL 224 (426)
T ss_dssp THHHHHHCTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSEEEEECTTCCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHhccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHcCCeeeeecccceEEecCCchhHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998875 6999999999999999999999999999999999999877
Q ss_pred c-cEEEEeeehhhHhhccccccceEEEeeecCCCceeeeeeeecceeecCChHHHHHHHHHHHHHHHHccCCCCCCchHH
Q psy1361 816 K-QLELDIDGVYKYMLLLKKKKYAALSISKLSNGKMICSQEIKGVDVVRRDWSQLASEAGKFVISQILDEQSYTDYSLDD 894 (1274)
Q Consensus 816 ~-~LeLe~E~vy~~lLLl~KKrYA~l~~~~~~dG~~~~~~evKGle~vRRD~c~l~K~~~~~vL~~ILs~~~~~~~~~e~ 894 (1274)
+ +++||+|++|.+++|++||||+++. .+|+ +++||++++|||||+++|+++.++|+.||.+.+ .
T Consensus 225 ~~~i~le~E~iy~~~l~~~KKrY~~~~----~~~k----~~~kGie~~Rrd~~~~~k~~~~~vl~~il~~~d-----~-- 289 (426)
T d1tgoa2 225 PGLLELEYEGFYKRGFFVTKKKYAVID----EEDK----ITTRGLEIVRRDWSEIAKETQARVLEAILKHGD-----V-- 289 (426)
T ss_dssp CTTCCEEEEEEEEEEEEEETTEEEEEC----TTCC----EEEESCSCCSSCBCHHHHHHHHHHHHHHHTTCC-----H--
T ss_pred cchhhhheeeeeeecceecccceeeee----cCCC----cccceeeecCCCCchhHHHHHHHHHHHHhccCc-----c--
Confidence 4 7999999999999999999999873 3454 579999999999999999999999999999888 4
Q ss_pred HHHHHHHHHHHHHHHHhCCCcCcccceeeecccCCccccCCCCCchHHHHHHHHhhhCCCCCCCCCEEEEEEEeCCCCCc
Q psy1361 895 RLQNIHEHMKKIRTDLDNGFVPLTLLEITKQLTKAPEEYTDRKALPHVQVALRLNNTNSKKLKQGDTISYIICEDGTSEA 974 (1274)
Q Consensus 895 ~ve~I~~~l~~~~~kL~~g~vpledlvI~K~LsK~pe~Y~d~~~~PHV~vAlrl~~~~G~~v~~Gd~I~YVI~~~g~~~~ 974 (1274)
+.+.+++.+...+|++|++|+++|+|+++|+|++++|.. .+|||++|.||.. .|..+.+||+|+|||++++. +
T Consensus 290 --~~~~~~i~~~~~~l~~~~~~~edl~i~~~l~k~~~~Yk~--~~phv~~a~rl~~-~g~~i~~GdrI~Yvivk~~~--~ 362 (426)
T d1tgoa2 290 --EEAVRIVKEVTEKLSKYEVPPEKLVIYEQITRDLKDYKA--TGPHVAVAKRLAA-RGIKIRPGTVISYIVLKGSG--R 362 (426)
T ss_dssp --HHHHHHHHHHHHHHHTTCSCGGGSCEEEECSSCGGGSCS--SSSHHHHHHHHHH-HTCCCCTTSEEEEEEBCCSS--S
T ss_pred --chhhHHHHHHHHHHhcCCCCHHHHhhhhhhccChhhccc--cCcHHHHHHHHHh-cCCCCCCCCEEEEEEEeCCC--c
Confidence 455667778888999999999999999999999999964 4799999999975 58899999999999997643 5
Q ss_pred ccccccChHHHhhCCCccccHHHHHhccchHHHHHhccccCCCChhHH
Q psy1361 975 ATQRAYNIEELKNNSKLKIDVNYYLSQQIHPVVTRLLEPIEGTDAVRI 1022 (1274)
Q Consensus 975 ~~~RA~~p~e~~~~~~l~iD~eYYl~kQI~Ppv~Rl~~pi~G~d~~~i 1022 (1274)
..+|+++++++. ..++.||++||+++||++||.|||+|| ||+...|
T Consensus 363 ~~d~~~~~~~~~-~~~~~iD~~yYiekqi~~pl~~il~~~-g~~~e~l 408 (426)
T d1tgoa2 363 IGDRAIPFDEFD-PAKHKYDAEYYIENQVLPAVERILRAF-GYRKEDL 408 (426)
T ss_dssp TTCCEEEGGGCC-TTTCCBCHHHHHHHTTGGGTHHHHHTT-TCCGGGS
T ss_pred ccceeecHHHhC-ccCCCCCHHHHHHHHHHHHHHHHHhhc-CCCHHHh
Confidence 789999999885 456899999999999999999999999 8886553
|
| >d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
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| >d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage RB69 [TaxId: 12353]} | Back information, alignment and structure |
|---|
| >d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage phi-29 [TaxId: 10756]} | Back information, alignment and structure |
|---|
| >d1k18a_ g.67.1.1 (A:) Zinc finger domain of DNA polymerase-alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA polymerases {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|