Psyllid ID: psy13626


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
MGIPNQNNYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQFQ
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
mgipnqnnymECFQStttrmpqseevVRRTDQVTKRIQELAAHMrssdkchsfvphAERIRIAVSELsaifpqntnnDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQFQ
mgipnqnnyMECFQstttrmpqseevvRRTDQVTKRIQELAAhmrssdkchsfVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQFQ
MGIPNQNNYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQFQ
*************************************************CHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLE*****VRSCAY**************
************************EVVRRTDQVTKRIQELAA*************HAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQFQ
MGIPNQNNYMECFQSTT***************VTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQFQ
************FQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQFQ
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGIPNQNNYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQFQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query127 2.2.26 [Sep-21-2011]
Q14161759 ARF GTPase-activating pro yes N/A 0.803 0.134 0.415 6e-19
Q9JLQ2708 ARF GTPase-activating pro yes N/A 0.803 0.144 0.415 2e-18
Q9Z272770 ARF GTPase-activating pro no N/A 0.803 0.132 0.398 1e-15
Q9Y2X7761 ARF GTPase-activating pro no N/A 0.803 0.134 0.398 1e-15
Q68FF6770 ARF GTPase-activating pro no N/A 0.803 0.132 0.398 1e-15
>sp|Q14161|GIT2_HUMAN ARF GTPase-activating protein GIT2 OS=Homo sapiens GN=GIT2 PE=1 SV=2 Back     alignment and function desciption
 Score = 92.8 bits (229), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/118 (41%), Positives = 81/118 (68%), Gaps = 16/118 (13%)

Query: 20  MPQSEEVVRRTDQVTKRIQELAAHMRSS--DKCHSFVPHAERIRIAVSELSAIFPQNTNN 77
           +P +E+V+R+T+Q+TK IQEL   +R++  +K  S++P +ERI +AV+E++A+FP+   +
Sbjct: 637 LPSTEDVIRKTEQITKNIQEL---LRAAQENKHDSYIPCSERIHVAVTEMAALFPKKPKS 693

Query: 78  DLIRHALRSLNTSTVRLQAECAQ-LEGS----------AERVRSCAYNMAKANKQLLT 124
           D++R +LR L +S  RLQ+EC + L G            ++V  CAY++AKA KQL+T
Sbjct: 694 DMVRTSLRLLTSSAYRLQSECKKTLPGDPGSPTDVQLVTQQVIQCAYDIAKAAKQLVT 751




GTPase-activating protein for the ADP ribosylation factor family.
Homo sapiens (taxid: 9606)
>sp|Q9JLQ2|GIT2_MOUSE ARF GTPase-activating protein GIT2 OS=Mus musculus GN=Git2 PE=1 SV=2 Back     alignment and function description
>sp|Q9Z272|GIT1_RAT ARF GTPase-activating protein GIT1 OS=Rattus norvegicus GN=Git1 PE=1 SV=1 Back     alignment and function description
>sp|Q9Y2X7|GIT1_HUMAN ARF GTPase-activating protein GIT1 OS=Homo sapiens GN=GIT1 PE=1 SV=2 Back     alignment and function description
>sp|Q68FF6|GIT1_MOUSE ARF GTPase-activating protein GIT1 OS=Mus musculus GN=Git1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query127
328718235 622 PREDICTED: ARF GTPase-activating protein 0.858 0.175 0.577 2e-29
322795216 591 hypothetical protein SINV_13231 [Solenop 0.968 0.208 0.518 2e-26
332025678 319 ARF GTPase-activating protein GIT2 [Acro 0.984 0.391 0.511 3e-26
383863605 676 PREDICTED: ARF GTPase-activating protein 0.968 0.181 0.503 5e-26
345479874 642 PREDICTED: ARF GTPase-activating protein 0.992 0.196 0.5 8e-26
340713915 674 PREDICTED: LOW QUALITY PROTEIN: ARF GTPa 0.960 0.181 0.5 1e-25
350421162 674 PREDICTED: ARF GTPase-activating protein 0.960 0.181 0.5 1e-25
307178093 675 ARF GTPase-activating protein GIT1 [Camp 0.968 0.182 0.503 3e-25
328788551 674 PREDICTED: ARF GTPase-activating protein 0.968 0.182 0.481 1e-24
380025685 678 PREDICTED: ARF GTPase-activating protein 0.968 0.181 0.481 2e-24
>gi|328718235|ref|XP_001944772.2| PREDICTED: ARF GTPase-activating protein GIT2-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  133 bits (335), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 63/109 (57%), Positives = 83/109 (76%)

Query: 18  TRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNN 77
           + +P  E+VVR T QVTK IQEL  ++RSS+ C +FVP  E+IR AV EL+AIFP + N+
Sbjct: 514 SNLPSYEDVVRHTAQVTKGIQELWTNIRSSEACKAFVPGTEKIRTAVVELTAIFPHSIND 573

Query: 78  DLIRHALRSLNTSTVRLQAECAQLEGSAERVRSCAYNMAKANKQLLTQF 126
           D+++ AL SLNT+T +LQ ECA LE   ERVR C++N+AKA KQLLT+F
Sbjct: 574 DVLKSALWSLNTNTTQLQLECACLEAGVERVRDCSFNIAKATKQLLTRF 622




Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795216|gb|EFZ18038.1| hypothetical protein SINV_13231 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|332025678|gb|EGI65838.1| ARF GTPase-activating protein GIT2 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|383863605|ref|XP_003707270.1| PREDICTED: ARF GTPase-activating protein GIT2-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|345479874|ref|XP_001603961.2| PREDICTED: ARF GTPase-activating protein GIT2-like [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|340713915|ref|XP_003395479.1| PREDICTED: LOW QUALITY PROTEIN: ARF GTPase-activating protein GIT1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|350421162|ref|XP_003492755.1| PREDICTED: ARF GTPase-activating protein GIT2-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|307178093|gb|EFN66920.1| ARF GTPase-activating protein GIT1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|328788551|ref|XP_395358.4| PREDICTED: ARF GTPase-activating protein GIT2-like isoform 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|380025685|ref|XP_003696599.1| PREDICTED: ARF GTPase-activating protein GIT1-like [Apis florea] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query127
ZFIN|ZDB-GENE-060526-267750 git2a "G protein-coupled recep 0.929 0.157 0.413 5.3e-18
UNIPROTKB|F8W7V0649 GIT2 "ARF GTPase-activating pr 0.818 0.160 0.413 2.3e-17
UNIPROTKB|F8WAK2681 GIT2 "ARF GTPase-activating pr 0.818 0.152 0.413 2.5e-17
UNIPROTKB|F8VXI9708 GIT2 "ARF GTPase-activating pr 0.818 0.146 0.413 2.7e-17
UNIPROTKB|F1RIT6729 GIT2 "Uncharacterized protein" 0.818 0.142 0.413 2.8e-17
UNIPROTKB|E1BI41759 GIT2 "Uncharacterized protein" 0.818 0.137 0.413 3e-17
UNIPROTKB|Q14161759 GIT2 "ARF GTPase-activating pr 0.818 0.137 0.413 3e-17
MGI|MGI:1347053708 Git2 "G protein-coupled recept 0.818 0.146 0.413 4.4e-17
UNIPROTKB|E2R8Q3759 GIT2 "Uncharacterized protein" 0.818 0.137 0.413 6.3e-17
UNIPROTKB|E1BWS0730 GIT2 "Uncharacterized protein" 0.842 0.146 0.386 9.7e-17
ZFIN|ZDB-GENE-060526-267 git2a "G protein-coupled receptor kinase interactor 2a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 229 (85.7 bits), Expect = 5.3e-18, P = 5.3e-18
 Identities = 55/133 (41%), Positives = 83/133 (62%)

Query:     3 IPNQNNYMECFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRI 62
             IP   ++ EC       +P +E+V+R+T+Q+TK IQEL       +K  SFVP AERI +
Sbjct:   615 IPELEDH-EC--ELDPSLPSTEDVIRKTEQITKNIQELL-RAAQENKHESFVPCAERIHV 670

Query:    63 AVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQAECAQ---LEGS--------AERVRSC 111
             AV+E++A+FP+   ++ +R++LR L +S  RLQ EC +   LE S         ++V  C
Sbjct:   671 AVNEMAALFPKRPRSETVRNSLRLLTSSANRLQTECKKASPLESSQASDMQLVTQQVIQC 730

Query:   112 AYNMAKANKQLLT 124
             AY++AKA KQL+T
Sbjct:   731 AYDIAKAAKQLVT 743




GO:0008060 "ARF GTPase activator activity" evidence=IEA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0032312 "regulation of ARF GTPase activity" evidence=IEA
GO:0022604 "regulation of cell morphogenesis" evidence=IMP
GO:0042074 "cell migration involved in gastrulation" evidence=IMP
UNIPROTKB|F8W7V0 GIT2 "ARF GTPase-activating protein GIT2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F8WAK2 GIT2 "ARF GTPase-activating protein GIT2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F8VXI9 GIT2 "ARF GTPase-activating protein GIT2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1RIT6 GIT2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E1BI41 GIT2 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q14161 GIT2 "ARF GTPase-activating protein GIT2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1347053 Git2 "G protein-coupled receptor kinase-interactor 2" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R8Q3 GIT2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E1BWS0 GIT2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query127
pfam12205123 pfam12205, GIT1_C, G protein-coupled receptor kina 2e-22
>gnl|CDD|152640 pfam12205, GIT1_C, G protein-coupled receptor kinase-interacting protein 1 C term Back     alignment and domain information
 Score = 84.9 bits (210), Expect = 2e-22
 Identities = 51/118 (43%), Positives = 78/118 (66%), Gaps = 14/118 (11%)

Query: 20  MPQSEEVVRRTDQVTKRIQELAAHMRSSD--KCHSFVPHAERIRIAVSELSAIFPQNTNN 77
           +P +E+V+R+T+Q+TK IQEL   +R++   K  SFVP +E I  AV+E++A+FP+  N+
Sbjct: 8   LPSTEDVIRKTEQITKNIQEL---LRAAQEGKHESFVPCSENILTAVNEMAALFPERPNS 64

Query: 78  DLIRHALRSLNTSTVRLQAEC--AQLEGSA-------ERVRSCAYNMAKANKQLLTQF 126
           + +R++LR L +S  RLQ EC  A   G A       ++V  CAY++AKA KQL+T  
Sbjct: 65  ETVRNSLRLLTSSAERLQNECKKAVPPGIAVDMQLVTQQVIQCAYDIAKAAKQLVTIT 122


This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with pfam01412, pfam00023, pfam08518. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C terminal and the LD motifs of paxillin. The C terminal folds into a four helix bundle. Length = 123

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 127
PF12205123 GIT1_C: G protein-coupled receptor kinase-interact 100.0
KOG0818|consensus669 99.98
smart00307200 ILWEQ I/LWEQ domain. Thought to possess an F-actin 95.4
PF03623139 Focal_AT: Focal adhesion targeting region; InterPr 94.81
PF12026210 DUF3513: Domain of unknown function (DUF3513); Int 92.33
PF08913125 VBS: Vinculin Binding Site; InterPro: IPR015009 Vi 82.96
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length Back     alignment and domain information
Probab=100.00  E-value=2.3e-49  Score=294.96  Aligned_cols=110  Identities=47%  Similarity=0.774  Sum_probs=99.0

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhhHHHHH
Q psy13626         17 TTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTVRLQA   96 (127)
Q Consensus        17 ~~~~P~~e~Vir~TE~vTr~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~aLFP~~~~~e~vr~~L~~L~~~a~~Lq~   96 (127)
                      ++++||+|||+||||+|||+|||||++||+++ +++|+||||+|++||+||++|||++|.+++||++|++|++++.+||+
T Consensus         5 ~~~~p~~e~Vi~~TE~vTk~IqeLl~aAQ~~~-~~s~~pcae~I~~aV~~m~~LfP~~~~~e~vr~~L~~L~~~~~~Lq~   83 (123)
T PF12205_consen    5 DPNLPSTEDVIRRTEQVTKRIQELLRAAQEGR-HDSFAPCAERIRSAVTEMAALFPKDPRSETVRSSLRQLTSSAYRLQA   83 (123)
T ss_dssp             BSS-S-HHHHHHHHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHTS-SSB--HHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc-cccchhHHHHHHHHHHHHHHhCCCccCChHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999975 68999999999999999999999999999999999999999999999


Q ss_pred             hhhh---------hHhhHHHHHHHHHHHHHhHhhhhhhcC
Q psy13626         97 ECAQ---------LEGSAERVRSCAYNMAKANKQLLTQFQ  127 (127)
Q Consensus        97 eC~~---------lq~~t~qv~~cAYdIAKAaK~LvT~f~  127 (127)
                      ||..         ++..++|||+||||||||||+|||+|+
T Consensus        84 eC~~~~~~~~~~~~~~~t~qvi~~AYdIAKAaKqLvT~~~  123 (123)
T PF12205_consen   84 ECQKAQPEDDAVDIQLVTQQVIQCAYDIAKAAKQLVTIFT  123 (123)
T ss_dssp             HHHS---S--SS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            9965         456699999999999999999999984



The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.

>KOG0818|consensus Back     alignment and domain information
>smart00307 ILWEQ I/LWEQ domain Back     alignment and domain information
>PF03623 Focal_AT: Focal adhesion targeting region; InterPro: IPR005189 Focal adhesion kinase (FAK) is a tyrosine kinase found in focal adhesions, intracellular signalling complexes that are formed following engagement of the extracellular matrix by integrins Back     alignment and domain information
>PF12026 DUF3513: Domain of unknown function (DUF3513); InterPro: IPR021901 This presumed domain is functionally uncharacterised Back     alignment and domain information
>PF08913 VBS: Vinculin Binding Site; InterPro: IPR015009 Vinculin binding sites are predominantly found in talin and talin-like molecules, enabling binding of vinculin to talin, stabilising integrin-mediated cell-matrix junctions Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query127
2jx0_A135 The Paxillin-Binding Domain (Pbd) Of G Protein Coup 4e-17
>pdb|2JX0|A Chain A, The Paxillin-Binding Domain (Pbd) Of G Protein Coupled Receptor (Gpcr)-Kinase (Grk) Interacting Protein 1 (Git1) Length = 135 Back     alignment and structure

Iteration: 1

Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 47/118 (39%), Positives = 75/118 (63%), Gaps = 16/118 (13%) Query: 20 MPQSEEVVRRTDQVTKRIQELAAHMRSSD--KCHSFVPHAERIRIAVSELSAIFPQNTNN 77 +P +E+V+ +T+QVTK IQEL +R++ K SFVP +E+I +AV+E++++FP+ Sbjct: 13 LPSTEDVILKTEQVTKNIQEL---LRAAQEFKHDSFVPCSEKIHLAVTEMASLFPKRPAL 69 Query: 78 DLIRHALRSLNTSTVRLQAEC-----------AQLEGSAERVRSCAYNMAKANKQLLT 124 + +R +LR LN S RLQ+EC + ++V CAY++AKA KQL+T Sbjct: 70 EPVRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVT 127

Structure Templates Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query127
2jx0_A135 ARF GTPase-activating protein GIT1; paxillin bindi 4e-29
>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus} Length = 135 Back     alignment and structure
 Score =  101 bits (253), Expect = 4e-29
 Identities = 45/119 (37%), Positives = 72/119 (60%), Gaps = 12/119 (10%)

Query: 20  MPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDL 79
           +P +E+V+ +T+QVTK IQEL    +      SFVP +E+I +AV+E++++FP+    + 
Sbjct: 13  LPSTEDVILKTEQVTKNIQELLRAAQEFKH-DSFVPCSEKIHLAVTEMASLFPKRPALEP 71

Query: 80  IRHALRSLNTSTVRLQAECAQL-----------EGSAERVRSCAYNMAKANKQLLTQFQ 127
           +R +LR LN S  RLQ+EC +            +   ++V  CAY++AKA KQL+T   
Sbjct: 72  VRSSLRLLNASAYRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITT 130


Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query127
2jx0_A135 ARF GTPase-activating protein GIT1; paxillin bindi 100.0
3gm3_A153 Protein tyrosine kinase 2 beta; four-helix bundle, 95.2
1k04_A162 FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN f 93.36
1sj8_A308 Talin 1; structural protein; 2.60A {Mus musculus} 93.3
3t6g_B229 Breast cancer anti-estrogen resistance protein 1; 92.86
3dyj_A332 Talin-1; helix bundles, cytoskeletal protein, inte 91.64
2jsw_A189 Talin-1; C-terminal actin binding site, ABS3, that 91.49
2l6f_A215 Focal adhesion kinase 1, linker1, paxillin, linke 88.22
1tr2_A1066 Vinculin isoform 1; actin-binding, cell adhesion; 86.24
1sj8_A 308 Talin 1; structural protein; 2.60A {Mus musculus} 85.2
1qkr_A188 Vinculin, tail domain; actin cytoskeleton, cell ad 84.97
>2jx0_A ARF GTPase-activating protein GIT1; paxillin binding domain homologue, ANK repeat, cytoplasm, GTPase activation, metal-binding; NMR {Rattus norvegicus} Back     alignment and structure
Probab=100.00  E-value=6.8e-52  Score=312.04  Aligned_cols=115  Identities=40%  Similarity=0.611  Sum_probs=110.0

Q ss_pred             hhhccCCCCCChhHHHHHHHHHHHHHHHHHHHhhcCCCCCCccchHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhh
Q psy13626         12 CFQSTTTRMPQSEEVVRRTDQVTKRIQELAAHMRSSDKCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTST   91 (127)
Q Consensus        12 ~~~~~~~~~P~~e~Vir~TE~vTr~IqeLl~aaq~~~~~~~fvpcae~I~~AV~el~aLFP~~~~~e~vr~~L~~L~~~a   91 (127)
                      +|+|+++++|++|||+||||+|||||||||+|||++ ++++|+||||||++||+||++|||++|++|+||.+|++|++++
T Consensus         5 ~~~~~~~~~P~~e~Vvr~TE~ITk~IqeLl~AaQ~~-~~~sfvpcserI~~AV~el~aLfp~~p~~etvr~sL~~L~~~a   83 (135)
T 2jx0_A            5 LDGDPDPGLPSTEDVILKTEQVTKNIQELLRAAQEF-KHDSFVPCSEKIHLAVTEMASLFPKRPALEPVRSSLRLLNASA   83 (135)
T ss_dssp             CCSSCBSSCSCHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCSSBCCHHHHHHHHHHHHHH
T ss_pred             cccccCCCCCchHHHHHHHHHHHHHHHHHHHHHhcc-ccCccccHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHH
Confidence            689999999999999999999999999999999998 5799999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhh-----------HhhHHHHHHHHHHHHHhHhhhhhhcC
Q psy13626         92 VRLQAECAQL-----------EGSAERVRSCAYNMAKANKQLLTQFQ  127 (127)
Q Consensus        92 ~~Lq~eC~~l-----------q~~t~qv~~cAYdIAKAaK~LvT~f~  127 (127)
                      .+||+||..+           |++|+|||+||||||||||+|||.|+
T Consensus        84 ~~Lq~EC~~~q~~~~~~~~~iq~~tqqVi~cAYdIAkAaK~Lvt~~~  130 (135)
T 2jx0_A           84 YRLQSECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITT  130 (135)
T ss_dssp             HHHHHHHHSCCCSCTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCCCcccCcchhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999554           56699999999999999999999985



>3gm3_A Protein tyrosine kinase 2 beta; four-helix bundle, transferase; 2.60A {Homo sapiens} SCOP: a.24.14.0 PDB: 3gm1_A 3gm2_A 3u3f_A 3u3c_A 2lk4_A Back     alignment and structure
>1k04_A FADK 1, focal adhesion kinase 1; UP-DOWN-UP-DOWN four helical bundle forming A helix-exchange transferase; 1.95A {Homo sapiens} SCOP: a.24.14.1 PDB: 1k05_A 3b71_A 1ow6_A 1ow7_A 1ow8_A 1ktm_A 1qvx_A 1pv3_A 2ra7_A* 1k40_A Back     alignment and structure
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1 a.216.1.1 Back     alignment and structure
>3t6g_B Breast cancer anti-estrogen resistance protein 1; CDC25-homology domain, GTPase exchange factor, focal-adhesio targeting domain, signaling protein; 2.50A {Homo sapiens} Back     alignment and structure
>3dyj_A Talin-1; helix bundles, cytoskeletal protein, integrin-bindin site, IBS2, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane; 1.85A {Mus musculus} PDB: 4dj9_B Back     alignment and structure
>2jsw_A Talin-1; C-terminal actin binding site, ABS3, thatch domain, cytoskeleton, phosphorylation, structural protein, actin- binding protein; NMR {Mus musculus} Back     alignment and structure
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A Back     alignment and structure
>1tr2_A Vinculin isoform 1; actin-binding, cell adhesion; 2.90A {Homo sapiens} PDB: 1st6_A Back     alignment and structure
>1sj8_A Talin 1; structural protein; 2.60A {Mus musculus} SCOP: a.215.1.1 a.216.1.1 Back     alignment and structure
>1qkr_A Vinculin, tail domain; actin cytoskeleton, cell adhesion, helical bundle, lipid binding; 1.8A {Gallus gallus} SCOP: a.24.9.1 PDB: 3h2u_A 3h2v_A 1rke_B 3myi_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query127
d1u89a1138 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 96.51
d1sj8a2125 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 95.89
d2b0ha1136 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 95.33
d1k04a_142 FAT domain of focal adhesion kinase {Human (Homo s 94.56
d1qkra_181 Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} 93.24
d1sj8a2125 Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} 86.35
>d1u89a1 a.216.1.1 (A:752-889) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: I/LWEQ domain
superfamily: I/LWEQ domain
family: I/LWEQ domain
domain: Talin 1
species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.51  E-value=0.046  Score=37.93  Aligned_cols=106  Identities=15%  Similarity=0.148  Sum_probs=82.3

Q ss_pred             CCCCCChhHHHHHHHHHHHHHHHHHHHhhcCC----CCCCccchHHHHHHHHHHHHhhcCCCCCcHHHHHHHHHhhhhhH
Q psy13626         17 TTRMPQSEEVVRRTDQVTKRIQELAAHMRSSD----KCHSFVPHAERIRIAVSELSAIFPQNTNNDLIRHALRSLNTSTV   92 (127)
Q Consensus        17 ~~~~P~~e~Vir~TE~vTr~IqeLl~aaq~~~----~~~~fvpcae~I~~AV~el~aLFP~~~~~e~vr~~L~~L~~~a~   92 (127)
                      .+.....+++..-...|+..|.+|++++....    ..+.|-...+.|..+..+|..   .....+.+..+-+....++.
T Consensus         7 ~~d~~~~~~L~~AA~~v~~Al~dLl~~~~~~~~~~~~~~~~~~a~~~il~~~~~l~~---~~~~~~~li~aAk~va~a~~   83 (138)
T d1u89a1           7 TEDGQLLRGVGAAATAVTQALNELLQHVKAHATGAGPAGRYDQATDTILTVTENIFS---SMGDAGEMVRQARILAQATS   83 (138)
T ss_dssp             CTTCHHHHTHHHHHHHHHHHHHHHHHHHTTSSCCSSSCSCCHHHHHHHHHHHHHHHH---TTTTSHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccHhHHHHHHHHHHHHHhh---ccCCHHHHHHHHHHHHHHHH
Confidence            34445568889999999999999999998643    345687888888888777765   55677888888898888888


Q ss_pred             HHHHhhhhhH------hhHHHHHHHHHHHHHhHhhhhhh
Q psy13626         93 RLQAECAQLE------GSAERVRSCAYNMAKANKQLLTQ  125 (127)
Q Consensus        93 ~Lq~eC~~lq------~~t~qv~~cAYdIAKAaK~LvT~  125 (127)
                      .|-.-+....      -.-++|+.+|-+||+++-+||..
T Consensus        84 ~Lv~aak~~a~~~~d~~~q~~li~aA~~va~~t~qLV~a  122 (138)
T d1u89a1          84 DLVNAIKADAEGESDLENSRKLLSAAKILADATAKMVEA  122 (138)
T ss_dssp             HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8877664322      12578999999999999999863



>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2b0ha1 a.24.9.2 (A:1838-1973) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1k04a_ a.24.14.1 (A:) FAT domain of focal adhesion kinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qkra_ a.24.9.1 (A:) Vinculin {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1sj8a2 a.216.1.1 (A:658-782) Talin 1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure