Psyllid ID: psy13631

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80-
Protein Sequence
MFHFYGVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGESH
Secondary Structure (PSIPRED)
ccccccEEEccccccccccccEEEEEccccEEEEEccccccEEEEEEEcccccEEEEEEEccccEEEEEEccccEEEEccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEcccccccccHcHEEEEEEHccccEEEccccccccEEEEcccccEEEEEEEcccccEEEEEccHHEEHccccc
Coil and Loop (DISEMBL)
mfhfygvrlvdnftcangsQEMLLLVQRTDIckisldtpdhtnvmlpvVGVKHaiaidwdpveqhlywtddearnksgesh
Flexible Loop (DISEMBL)
MFHFYGVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGESH
Low Complexity Region (SEG)
MFHFYGVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGESH
Disordered region (IsUnstruct)
*FHFYGVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWT************
Disordered Region (DISOPRED)
MFHFYGVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSG***
Disordered Region (DISEMBL)
MFHFYGVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDE*********
Disordered Region (DISPRO)
MFHFYGVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKS****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MFHFYGVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGESH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	81	2.2.26 [Sep-21-2011]
O75581	1613	Low-density lipoprotein r	yes	N/A	0.851	0.042	0.571	1e-17
O88572	1613	Low-density lipoprotein r	yes	N/A	0.851	0.042	0.571	2e-17
Q91VN0	1614	Low-density lipoprotein r	no	N/A	0.851	0.042	0.585	3e-17
O75197	1615	Low-density lipoprotein r	no	N/A	0.851	0.042	0.585	5e-17
Q8VI56	1905	Low-density lipoprotein r	no	N/A	0.790	0.033	0.4	1e-09
Q9QYP1	1905	Low-density lipoprotein r	no	N/A	0.790	0.033	0.4	1e-09
O75096	1905	Low-density lipoprotein r	no	N/A	0.790	0.033	0.4	2e-09
A2ARV4	4660	Low-density lipoprotein r	no	N/A	0.777	0.013	0.328	0.0002
P98158	4660	Low-density lipoprotein r	no	N/A	0.777	0.013	0.328	0.0004

>sp|O75581|LRP6_HUMAN Low-density lipoprotein receptor-related protein 6 OS=Homo sapiens GN=LRP6 PE=1 SV=2

 Score = 88.2 bits (217), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 58/70 (82%), Gaps = 1/70 (1%)

Query: 6   GVRLVDNF-TCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQ 64
           GV+L++N  TC +G+ E+LLL +RTD+ +ISLDTPD T+++L +  ++HAIAID+DPVE 
Sbjct: 313 GVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG 372

Query: 65  HLYWTDDEAR 74
           ++YWTDDE R
Sbjct: 373 YIYWTDDEVR 382

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation.
Homo sapiens (taxid: 9606)

>sp|O88572|LRP6_MOUSE Low-density lipoprotein receptor-related protein 6 OS=Mus musculus GN=Lrp6 PE=1 SV=1

 Score = 88.2 bits (217), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 58/70 (82%), Gaps = 1/70 (1%)

Query: 6   GVRLVDNF-TCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQ 64
           GV+L++N  TC +G+ E+LLL +RTD+ +ISLDTPD T+++L +  ++HAIAID+DPVE 
Sbjct: 313 GVKLMENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG 372

Query: 65  HLYWTDDEAR 74
           ++YWTDDE R
Sbjct: 373 YIYWTDDEVR 382

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Required for posterior patterning of the epiblast during gastrulation.

Mus musculus (taxid: 10090)

>sp|Q91VN0|LRP5_MOUSE Low-density lipoprotein receptor-related protein 5 OS=Mus musculus GN=Lrp5 PE=1 SV=3

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 57/70 (81%), Gaps = 1/70 (1%)

Query: 6   GVRLVDNF-TCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQ 64
           GV+L DN  TC  G++E+LLL +RTD+ +ISLDTPD T+++L V  ++HAIAID+DP+E 
Sbjct: 325 GVQLQDNGKTCKTGAEEVLLLARRTDLRRISLDTPDFTDIVLQVGDIRHAIAIDYDPLEG 384

Query: 65  HLYWTDDEAR 74
           ++YWTDDE R
Sbjct: 385 YVYWTDDEVR 394

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin (By similarity). Appears be required for postnatal control of vascular regression in the eye. Required for posterior patterning of the epiblast during gastrulation.

Mus musculus (taxid: 10090)

>sp|O75197|LRP5_HUMAN Low-density lipoprotein receptor-related protein 5 OS=Homo sapiens GN=LRP5 PE=1 SV=2

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 41/70 (58%), Positives = 57/70 (81%), Gaps = 1/70 (1%)

Query: 6   GVRLVDN-FTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQ 64
           GV+L DN  TC  G++E+LLL +RTD+ +ISLDTPD T+++L V  ++HAIAID+DP+E 
Sbjct: 326 GVQLQDNGRTCKAGAEEVLLLARRTDLRRISLDTPDFTDIVLQVDDIRHAIAIDYDPLEG 385

Query: 65  HLYWTDDEAR 74
           ++YWTDDE R
Sbjct: 386 YVYWTDDEVR 395

Component of the Wnt-Fzd-LRP5-LRP6 complex that triggers beta-catenin signaling through inducing aggregation of receptor-ligand complexes into ribosome-sized signalsomes. Cell-surface coreceptor of Wnt/beta-catenin signaling, which plays a pivotal role in bone formation. The Wnt-induced Fzd/LRP6 coreceptor complex recruits DVL1 polymers to the plasma membrane which, in turn, recruits the AXIN1/GSK3B-complex to the cell surface promoting the formation of signalsomes and inhibiting AXIN1/GSK3-mediated phosphorylation and destruction of beta-catenin. Appears be required for postnatal control of vascular regression in the eye. Required for posterior patterning of the epiblast during gastrulation.

Homo sapiens (taxid: 9606)

>sp|Q8VI56|LRP4_MOUSE Low-density lipoprotein receptor-related protein 4 OS=Mus musculus GN=Lrp4 PE=1 SV=3

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query: 6   GVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQH 65
           G R +++  CA    + LL  +R DI +IS DT D ++ ++P+  V+ A+A+DWD  + H
Sbjct: 727 GFRKINSHACAQSLDKFLLFARRMDIRRISFDTEDLSDDVIPLADVRSAVALDWDSRDDH 786

Query: 66  LYWTD 70
           +YWTD
Sbjct: 787 VYWTD 791

Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Mus musculus (taxid: 10090)

>sp|Q9QYP1|LRP4_RAT Low-density lipoprotein receptor-related protein 4 OS=Rattus norvegicus GN=Lrp4 PE=1 SV=2

 Score = 61.6 bits (148), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 42/65 (64%)

Query: 6   GVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQH 65
           G R +++  CA    + LL  +R DI +IS DT D ++ ++P+  V+ A+A+DWD  + H
Sbjct: 727 GFRKINSHACAQSLDKFLLFARRMDIRRISFDTEDLSDDVIPLADVRSAVALDWDSRDDH 786

Query: 66  LYWTD 70
           +YWTD
Sbjct: 787 VYWTD 791

Mediates SOST-dependent inhibition of bone formation (By similarity). Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling (By similarity). Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Rattus norvegicus (taxid: 10116)

>sp|O75096|LRP4_HUMAN Low-density lipoprotein receptor-related protein 4 OS=Homo sapiens GN=LRP4 PE=1 SV=4

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 26/65 (40%), Positives = 41/65 (63%)

Query: 6   GVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQH 65
           G R + +  CA    + LL  +R DI +IS DT D ++ ++P+  V+ A+A+DWD  + H
Sbjct: 727 GFRKISSHACAQSLDKFLLFARRMDIRRISFDTEDLSDDVIPLADVRSAVALDWDSRDDH 786

Query: 66  LYWTD 70
           +YWTD
Sbjct: 787 VYWTD 791

Mediates SOST-dependent inhibition of bone formation. Functions as a specific facilitator of SOST-mediated inhibition of Wnt signaling. Plays a key role in the formation and the maintenance of the neuromuscular junction (NMJ), the synapse between motor neuron and skeletal muscle. Directly binds AGRIN and recruits it to the MUSK signaling complex. Mediates the AGRIN-induced phosphorylation of MUSK, the kinase of the complex. The activation of MUSK in myotubes induces the formation of NMJ by regulating different processes including the transcription of specific genes and the clustering of AChR in the postsynaptic membrane. Alternatively, may be involved in the negative regulation of the canonical Wnt signaling pathway, being able to antagonize the LRP6-mediated activation of this pathway. More generally, has been proposed to function as a cell surface endocytic receptor binding and internalizing extracellular ligands for degradation by lysosomes.

Homo sapiens (taxid: 9606)

>sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related protein 2 OS=Mus musculus GN=Lrp2 PE=1 SV=1

 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 11   DNFTCANGSQEMLLLVQRTDICKISLDTPDHTN-VMLPVVGVKHAIAIDWDPVEQHLYWT 69
            D+  C  G Q  L+ V+   I  ISLD    +N  M+P+ G++H   +++D  EQ +YW 
Sbjct: 1737 DSVNCVRGDQPFLISVRENVIFGISLDPEVKSNDAMVPISGIQHGYDVEFDDSEQFIYWV 1796

Query: 70   DDEA 73
            ++  
Sbjct: 1797 ENPG 1800

Acts together with cubilin to mediate HDL endocytosis.

Mus musculus (taxid: 10090)

>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus norvegicus GN=Lrp2 PE=1 SV=1

 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)

Query: 11   DNFTCANGSQEMLLLVQRTDICKISLDTPDHTN-VMLPVVGVKHAIAIDWDPVEQHLYWT 69
            D+  C  G Q  L+ V+   I  ISLD    +N  M+P+ G++H   +++D  EQ +YW 
Sbjct: 1737 DSVNCVRGDQPFLMSVRDNIIFGISLDPEVKSNDAMVPISGIQHGYDVEFDDSEQFIYWV 1796

Query: 70   DDEA 73
            ++  
Sbjct: 1797 ENPG 1800

Acts together with cubilin to mediate HDL endocytosis (By similarity). Receptor-mediated uptake of polybasic drugs such as aprotinin, aminoglycosides and polymyxin B.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
340727334	1606	PREDICTED: low-density lipoprotein recep	0.839	0.042	0.681	8e-23
350422992	1606	PREDICTED: low-density lipoprotein recep	0.839	0.042	0.681	8e-23
328790587	1596	PREDICTED: low-density lipoprotein recep	0.839	0.042	0.681	8e-23
380023251	1606	PREDICTED: LOW QUALITY PROTEIN: low-dens	0.839	0.042	0.681	9e-23
307212491	1680	Low-density lipoprotein receptor-related	0.827	0.039	0.676	1e-22
383857988	1606	PREDICTED: low-density lipoprotein recep	0.827	0.041	0.676	3e-22
321478350	1713	hypothetical protein DAPPUDRAFT_310287 [	0.851	0.040	0.642	6e-21
307186181	1662	Low-density lipoprotein receptor-related	0.827	0.040	0.617	5e-20
332017479	1615	Low-density lipoprotein receptor-related	0.802	0.040	0.626	7e-20
328703795	1664	PREDICTED: LOW QUALITY PROTEIN: low-dens	0.839	0.040	0.623	1e-19

>gi|340727334|ref|XP_003402001.1| PREDICTED: low-density lipoprotein receptor-related protein 6-like [Bombus terrestris]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 62/69 (89%)

Query: 6   GVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQH 65
           GV+LVDN TCA G +E+LL+VQR +IC+ISLD+PD+TN +LP+ G+KHAIAID+DPV++ 
Sbjct: 321 GVKLVDNLTCAQGPEELLLIVQRNEICRISLDSPDYTNFVLPLTGIKHAIAIDFDPVQEM 380

Query: 66  LYWTDDEAR 74
           LYWTD+EAR
Sbjct: 381 LYWTDEEAR 389

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350422992|ref|XP_003493352.1| PREDICTED: low-density lipoprotein receptor-related protein 6-like [Bombus impatiens]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 62/69 (89%)

Query: 6   GVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQH 65
           GV+LVDN TCA G +E+LL+VQR +IC+ISLD+PD+TN +LP+ G+KHAIAID+DPV++ 
Sbjct: 321 GVKLVDNLTCAEGPEELLLIVQRNEICRISLDSPDYTNFVLPLTGIKHAIAIDFDPVQEM 380

Query: 66  LYWTDDEAR 74
           LYWTD+EAR
Sbjct: 381 LYWTDEEAR 389

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328790587|ref|XP_623419.2| PREDICTED: low-density lipoprotein receptor-related protein 6-like [Apis mellifera]

 Score =  110 bits (276), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 62/69 (89%)

Query: 6   GVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQH 65
           GV+LVDN TCA G +E+LL+VQR +IC+ISLD+PD+TN +LP+ G+KHAIAID+DPV++ 
Sbjct: 321 GVKLVDNLTCAEGPEELLLIVQRNEICRISLDSPDYTNFVLPLTGIKHAIAIDFDPVQEM 380

Query: 66  LYWTDDEAR 74
           LYWTD+EAR
Sbjct: 381 LYWTDEEAR 389

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023251|ref|XP_003695438.1| PREDICTED: LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 6-like [Apis florea]

 Score =  110 bits (276), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 47/69 (68%), Positives = 62/69 (89%)

Query: 6   GVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQH 65
           GV+LVDN TCA G +E+LL+VQR +IC+ISLD+PD+TN +LP+ G+KHAIAID+DPV++ 
Sbjct: 321 GVKLVDNLTCAEGPEELLLIVQRNEICRISLDSPDYTNFVLPLTGIKHAIAIDFDPVQEM 380

Query: 66  LYWTDDEAR 74
           LYWTD+EAR
Sbjct: 381 LYWTDEEAR 389

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307212491|gb|EFN88222.1| Low-density lipoprotein receptor-related protein 6 [Harpegnathos saltator]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 63/68 (92%)

Query: 6   GVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQH 65
           GV+LVDNFTCA G +E+LL+VQR++IC+ISLD+PD+TN +LP+ G+KHAIAID+DPV++ 
Sbjct: 392 GVKLVDNFTCAKGPEELLLIVQRSEICRISLDSPDYTNFVLPLTGIKHAIAIDFDPVDEM 451

Query: 66  LYWTDDEA 73
           LYWTD++A
Sbjct: 452 LYWTDEQA 459

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383857988|ref|XP_003704485.1| PREDICTED: low-density lipoprotein receptor-related protein 6 [Megachile rotundata]

 Score =  108 bits (271), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 62/68 (91%)

Query: 6   GVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQH 65
           GV+LVDN TCA+G +E+LL+VQR +IC+ISLD+PD+TN +LP+ G+KHAIAID+DPV++ 
Sbjct: 321 GVKLVDNLTCADGPEELLLIVQRNEICRISLDSPDYTNFVLPLTGIKHAIAIDFDPVQEM 380

Query: 66  LYWTDDEA 73
           LYWTD+EA
Sbjct: 381 LYWTDEEA 388

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321478350|gb|EFX89307.1| hypothetical protein DAPPUDRAFT_310287 [Daphnia pulex]

 Score =  104 bits (260), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 45/70 (64%), Positives = 63/70 (90%)

Query: 6   GVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQH 65
           G +LVDNFTCA+G+Q++LLL +RTD+ +ISLDTPD+T+V+LP+ GVKHAIA+D+DPV+ +
Sbjct: 322 GSKLVDNFTCADGAQQLLLLARRTDLRRISLDTPDYTDVVLPLDGVKHAIAVDYDPVDGY 381

Query: 66  LYWTDDEARN 75
           +YW+DDE R 
Sbjct: 382 VYWSDDEVRG 391

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307186181|gb|EFN71887.1| Low-density lipoprotein receptor-related protein 6 [Camponotus floridanus]

 Score =  101 bits (252), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 42/68 (61%), Positives = 60/68 (88%)

Query: 6   GVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQH 65
           G++L+D++TCA G QE+LL+VQR +IC+ISLD+PD+TN  LP+ G+KHAIAID+D V++ 
Sbjct: 325 GIKLLDDYTCAKGPQELLLVVQRNEICRISLDSPDYTNFALPLTGIKHAIAIDFDTVDKM 384

Query: 66  LYWTDDEA 73
           LYWTD++A
Sbjct: 385 LYWTDEQA 392

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017479|gb|EGI58202.1| Low-density lipoprotein receptor-related protein 6 [Acromyrmex echinatior]

 Score =  100 bits (250), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 42/67 (62%), Positives = 59/67 (88%)

Query: 6   GVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQH 65
           GV+L+D  TCAN  +++LL+VQRT+IC+ISLD+PD+TN +LP+ G+KHAIAID+DP E+ 
Sbjct: 301 GVKLIDKHTCANRPEQLLLIVQRTEICRISLDSPDYTNFVLPLTGIKHAIAIDFDPAEEL 360

Query: 66  LYWTDDE 72
           LYWTD++
Sbjct: 361 LYWTDEQ 367

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328703795|ref|XP_001950234.2| PREDICTED: LOW QUALITY PROTEIN: low-density lipoprotein receptor-related protein 5-like [Acyrthosiphon pisum]

 Score =  100 bits (249), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 43/69 (62%), Positives = 59/69 (85%)

Query: 6   GVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQH 65
           GV+L+D+  CA+G QE+L LVQ+TDIC+ISLD+PDHT + +P+ G+ HAIAID+DPVE +
Sbjct: 409 GVKLIDHHNCADGVQEVLFLVQKTDICQISLDSPDHTIMSIPLTGLAHAIAIDYDPVEGY 468

Query: 66  LYWTDDEAR 74
           +YWTDDE +
Sbjct: 469 IYWTDDEIK 477

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	81
FB|FBgn0000119	1678	arr "arrow" [Drosophila melano	0.827	0.039	0.641	1.3e-17
UNIPROTKB|E9PHY1	471	LRP5 "Low-density lipoprotein	0.851	0.146	0.585	2.4e-17
UNIPROTKB|H0YGW5	1478	LRP6 "Low-density lipoprotein	0.851	0.046	0.571	7.8e-17
UNIPROTKB|F5H7J9	1568	LRP6 "Low-density lipoprotein	0.851	0.044	0.571	8.4e-17
MGI|MGI:1298218	1613	Lrp6 "low density lipoprotein	0.851	0.042	0.571	8.7e-17
UNIPROTKB|F1PCS0	1613	LRP6 "Uncharacterized protein"	0.851	0.042	0.571	8.7e-17
UNIPROTKB|O75581	1613	LRP6 "Low-density lipoprotein	0.851	0.042	0.571	8.7e-17
MGI|MGI:1278315	1614	Lrp5 "low density lipoprotein	0.851	0.042	0.585	1.1e-16
UNIPROTKB|F1MDE1	1604	LRP6 "Uncharacterized protein"	0.851	0.043	0.571	1.8e-16
UNIPROTKB|F1N1K8	1611	LRP5 "Uncharacterized protein"	0.851	0.042	0.585	1.8e-16

FB|FBgn0000119 arr "arrow" [Drosophila melanogaster (taxid:7227)]

 Score = 230 (86.0 bits), Expect = 1.3e-17, P = 1.3e-17
 Identities = 43/67 (64%), Positives = 55/67 (82%)

Query:     6 GVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQH 65
             GV+L+   TCANGSQEM+ +VQRT I KISLD+PD+T   LP+  VK+AIAID+DPVE+H
Sbjct:   388 GVKLISANTCANGSQEMMFIVQRTQISKISLDSPDYTIFPLPLGKVKYAIAIDYDPVEEH 447

Query:    66 LYWTDDE 72
             +YW+D E
Sbjct:   448 IYWSDVE 454

GO:0016055 "Wnt receptor signaling pathway" evidence=IMP

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISS

GO:0001745 "compound eye morphogenesis" evidence=IMP

GO:0005769 "early endosome" evidence=IDA

GO:0005770 "late endosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0042813 "Wnt-activated receptor activity" evidence=IDA

GO:0017147 "Wnt-protein binding" evidence=IPI

GO:0006622 "protein targeting to lysosome" evidence=IMP

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IMP

GO:0048076 "regulation of compound eye pigmentation" evidence=IMP

GO:0007399 "nervous system development" evidence=IMP

GO:0044332 "Wnt receptor signaling pathway involved in dorsal/ventral axis specification" evidence=IBA

UNIPROTKB|E9PHY1 LRP5 "Low-density lipoprotein receptor-related protein 5" [Homo sapiens (taxid:9606)]

 Score = 219 (82.2 bits), Expect = 2.4e-17, P = 2.4e-17
 Identities = 41/70 (58%), Positives = 57/70 (81%)

Query:     6 GVRLVDNF-TCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQ 64
             GV+L DN  TC  G++E+LLL +RTD+ +ISLDTPD T+++L V  ++HAIAID+DP+E 
Sbjct:   326 GVQLQDNGRTCKAGAEEVLLLARRTDLRRISLDTPDFTDIVLQVDDIRHAIAIDYDPLEG 385

Query:    65 HLYWTDDEAR 74
             ++YWTDDE R
Sbjct:   386 YVYWTDDEVR 395

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|H0YGW5 LRP6 "Low-density lipoprotein receptor-related protein 6" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 7.8e-17, P = 7.8e-17
 Identities = 40/70 (57%), Positives = 58/70 (82%)

Query:     6 GVRLVDNF-TCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQ 64
             GV+L++N  TC +G+ E+LLL +RTD+ +ISLDTPD T+++L +  ++HAIAID+DPVE 
Sbjct:   178 GVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG 237

Query:    65 HLYWTDDEAR 74
             ++YWTDDE R
Sbjct:   238 YIYWTDDEVR 247

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F5H7J9 LRP6 "Low-density lipoprotein receptor-related protein 6" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 8.4e-17, P = 8.4e-17
 Identities = 40/70 (57%), Positives = 58/70 (82%)

Query:     6 GVRLVDNF-TCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQ 64
             GV+L++N  TC +G+ E+LLL +RTD+ +ISLDTPD T+++L +  ++HAIAID+DPVE 
Sbjct:   313 GVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG 372

Query:    65 HLYWTDDEAR 74
             ++YWTDDE R
Sbjct:   373 YIYWTDDEVR 382

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1298218 Lrp6 "low density lipoprotein receptor-related protein 6" [Mus musculus (taxid:10090)]

 Score = 222 (83.2 bits), Expect = 8.7e-17, P = 8.7e-17
 Identities = 40/70 (57%), Positives = 58/70 (82%)

Query:     6 GVRLVDNF-TCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQ 64
             GV+L++N  TC +G+ E+LLL +RTD+ +ISLDTPD T+++L +  ++HAIAID+DPVE 
Sbjct:   313 GVKLMENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG 372

Query:    65 HLYWTDDEAR 74
             ++YWTDDE R
Sbjct:   373 YIYWTDDEVR 382

GO:0001702 "gastrulation with mouth forming second" evidence=IGI

GO:0001756 "somitogenesis" evidence=IGI

GO:0001843 "neural tube closure" evidence=IGI;IMP

GO:0001933 "negative regulation of protein phosphorylation" evidence=ISO

GO:0001947 "heart looping" evidence=IGI

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=IMP

GO:0003344 "pericardium morphogenesis" evidence=IGI

GO:0003401 "axis elongation" evidence=IMP

GO:0005041 "low-density lipoprotein receptor activity" evidence=ISO;IBA

GO:0005102 "receptor binding" evidence=ISO

GO:0005109 "frizzled binding" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005769 "early endosome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005886 "plasma membrane" evidence=IGI;ISO;IDA

GO:0005901 "caveola" evidence=IBA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISO

GO:0006469 "negative regulation of protein kinase activity" evidence=ISO

GO:0006897 "endocytosis" evidence=IEA

GO:0007204 "elevation of cytosolic calcium ion concentration" evidence=ISO

GO:0007268 "synaptic transmission" evidence=ISO;IBA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0009880 "embryonic pattern specification" evidence=IMP

GO:0009950 "dorsal/ventral axis specification" evidence=IMP

GO:0009952 "anterior/posterior pattern specification" evidence=IGI;IMP

GO:0009986 "cell surface" evidence=ISO;IBA

GO:0014029 "neural crest formation" evidence=ISO;IBA

GO:0014033 "neural crest cell differentiation" evidence=ISO

GO:0015026 "coreceptor activity" evidence=IBA

GO:0016020 "membrane" evidence=IDA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=ISO;IGI

GO:0016337 "cell-cell adhesion" evidence=ISO

GO:0017147 "Wnt-protein binding" evidence=ISO;IPI

GO:0019210 "kinase inhibitor activity" evidence=ISO

GO:0019534 "toxin transporter activity" evidence=ISO;IMP

GO:0021587 "cerebellum morphogenesis" evidence=IMP

GO:0021794 "thalamus development" evidence=IMP

GO:0021795 "cerebral cortex cell migration" evidence=IMP

GO:0021861 "forebrain radial glial cell differentiation" evidence=IGI

GO:0021872 "forebrain generation of neurons" evidence=IMP

GO:0021874 "Wnt receptor signaling pathway involved in forebrain neuroblast division" evidence=IGI;IMP

GO:0021915 "neural tube development" evidence=IGI

GO:0021943 "formation of radial glial scaffolds" evidence=IGI

GO:0021987 "cerebral cortex development" evidence=IMP

GO:0030178 "negative regulation of Wnt receptor signaling pathway" evidence=IGI

GO:0030326 "embryonic limb morphogenesis" evidence=IGI

GO:0030900 "forebrain development" evidence=IMP

GO:0030901 "midbrain development" evidence=IMP

GO:0030917 "midbrain-hindbrain boundary development" evidence=IMP

GO:0031410 "cytoplasmic vesicle" evidence=ISO

GO:0034185 "apolipoprotein binding" evidence=IPI

GO:0034392 "negative regulation of smooth muscle cell apoptotic process" evidence=ISO

GO:0035108 "limb morphogenesis" evidence=IGI;IMP

GO:0035115 "embryonic forelimb morphogenesis" evidence=IGI;IMP

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IGI;IMP

GO:0035261 "external genitalia morphogenesis" evidence=IMP

GO:0036342 "post-anal tail morphogenesis" evidence=IGI;IMP

GO:0042074 "cell migration involved in gastrulation" evidence=IGI

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IMP

GO:0042733 "embryonic digit morphogenesis" evidence=IGI;IMP

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0042813 "Wnt-activated receptor activity" evidence=IBA

GO:0043025 "neuronal cell body" evidence=ISO;IBA

GO:0043065 "positive regulation of apoptotic process" evidence=IMP

GO:0043235 "receptor complex" evidence=IBA

GO:0044332 "Wnt receptor signaling pathway involved in dorsal/ventral axis specification" evidence=ISO;IBA

GO:0045202 "synapse" evidence=ISO;IBA

GO:0045599 "negative regulation of fat cell differentiation" evidence=IMP

GO:0045778 "positive regulation of ossification" evidence=IMP

GO:0045780 "positive regulation of bone resorption" evidence=IMP

GO:0045787 "positive regulation of cell cycle" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IBA

GO:0046849 "bone remodeling" evidence=IGI

GO:0048596 "embryonic camera-type eye morphogenesis" evidence=IMP

GO:0048699 "generation of neurons" evidence=IMP

GO:0048705 "skeletal system morphogenesis" evidence=IMP

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IMP

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=ISO;IMP

GO:0051593 "response to folic acid" evidence=IMP

GO:0060021 "palate development" evidence=IMP

GO:0060026 "convergent extension" evidence=IGI

GO:0060042 "retina morphogenesis in camera-type eye" evidence=IMP

GO:0060059 "embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IGI;ISO;IMP

GO:0060284 "regulation of cell development" evidence=IMP

GO:0060325 "face morphogenesis" evidence=IMP

GO:0060349 "bone morphogenesis" evidence=IMP

GO:0060444 "branching involved in mammary gland duct morphogenesis" evidence=IMP

GO:0060535 "trachea cartilage morphogenesis" evidence=IGI

GO:0060596 "mammary placode formation" evidence=IMP

GO:0060603 "mammary gland duct morphogenesis" evidence=IGI

GO:0061310 "canonical Wnt receptor signaling pathway involved in cardiac neural crest cell differentiation involved in heart development" evidence=IMP

GO:0061324 "canonical Wnt receptor signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation" evidence=IMP

GO:0071397 "cellular response to cholesterol" evidence=ISO

GO:0071542 "dopaminergic neuron differentiation" evidence=IMP

GO:0071901 "negative regulation of protein serine/threonine kinase activity" evidence=ISO

GO:0071936 "coreceptor activity involved in Wnt receptor signaling pathway" evidence=ISO

GO:0090009 "primitive streak formation" evidence=IGI

GO:0090118 "receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport" evidence=IMP

GO:0090244 "Wnt receptor signaling pathway involved in somitogenesis" evidence=IMP

GO:0090245 "axis elongation involved in somitogenesis" evidence=IGI

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=ISO

GO:2000051 "negative regulation of non-canonical Wnt receptor signaling pathway" evidence=IGI

GO:2000055 "positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification" evidence=ISO

GO:2000149 "negative regulation of planar cell polarity pathway involved in ventricular septum morphogenesis" evidence=IGI

GO:2000151 "negative regulation of planar cell polarity pathway involved in cardiac muscle tissue morphogenesis" evidence=IGI

GO:2000162 "negative regulation of planar cell polarity pathway involved in cardiac right atrium morphogenesis" evidence=IGI

GO:2000164 "negative regulation of planar cell polarity pathway involved in outflow tract morphogenesis" evidence=IGI

GO:2000166 "negative regulation of planar cell polarity pathway involved in pericardium morphogenesis" evidence=IGI

GO:2000168 "negative regulation of planar cell polarity pathway involved in neural tube closure" evidence=IGI

UNIPROTKB|F1PCS0 LRP6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 222 (83.2 bits), Expect = 8.7e-17, P = 8.7e-17
 Identities = 40/70 (57%), Positives = 58/70 (82%)

Query:     6 GVRLVDNF-TCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQ 64
             GV+L++N  TC +G+ E+LLL +RTD+ +ISLDTPD T+++L +  ++HAIAID+DPVE 
Sbjct:   313 GVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG 372

Query:    65 HLYWTDDEAR 74
             ++YWTDDE R
Sbjct:   373 YIYWTDDEVR 382

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|O75581 LRP6 "Low-density lipoprotein receptor-related protein 6" [Homo sapiens (taxid:9606)]

 Score = 222 (83.2 bits), Expect = 8.7e-17, P = 8.7e-17
 Identities = 40/70 (57%), Positives = 58/70 (82%)

Query:     6 GVRLVDNF-TCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQ 64
             GV+L++N  TC +G+ E+LLL +RTD+ +ISLDTPD T+++L +  ++HAIAID+DPVE 
Sbjct:   313 GVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG 372

Query:    65 HLYWTDDEAR 74
             ++YWTDDE R
Sbjct:   373 YIYWTDDEVR 382

GO:0016021 "integral to membrane" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0021795 "cerebral cortex cell migration" evidence=IEA

GO:0021861 "forebrain radial glial cell differentiation" evidence=IEA

GO:0021874 "Wnt receptor signaling pathway involved in forebrain neuroblast division" evidence=IEA

GO:0021943 "formation of radial glial scaffolds" evidence=IEA

GO:0035115 "embryonic forelimb morphogenesis" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0036342 "post-anal tail morphogenesis" evidence=IEA

GO:0042074 "cell migration involved in gastrulation" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0045599 "negative regulation of fat cell differentiation" evidence=IEA

GO:0045778 "positive regulation of ossification" evidence=IEA

GO:0045780 "positive regulation of bone resorption" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0051593 "response to folic acid" evidence=IEA

GO:0060284 "regulation of cell development" evidence=IEA

GO:0060596 "mammary placode formation" evidence=IEA

GO:0061310 "canonical Wnt receptor signaling pathway involved in cardiac neural crest cell differentiation involved in heart development" evidence=IEA

GO:0061324 "canonical Wnt receptor signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation" evidence=IEA

GO:0071542 "dopaminergic neuron differentiation" evidence=IEA

GO:2000149 "negative regulation of planar cell polarity pathway involved in ventricular septum morphogenesis" evidence=IEA

GO:2000151 "negative regulation of planar cell polarity pathway involved in cardiac muscle tissue morphogenesis" evidence=IEA

GO:2000162 "negative regulation of planar cell polarity pathway involved in cardiac right atrium morphogenesis" evidence=IEA

GO:2000164 "negative regulation of planar cell polarity pathway involved in outflow tract morphogenesis" evidence=IEA

GO:2000166 "negative regulation of planar cell polarity pathway involved in pericardium morphogenesis" evidence=IEA

GO:2000168 "negative regulation of planar cell polarity pathway involved in neural tube closure" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IBA

GO:0001843 "neural tube closure" evidence=IBA

GO:0003344 "pericardium morphogenesis" evidence=IBA

GO:0007268 "synaptic transmission" evidence=IBA

GO:0009880 "embryonic pattern specification" evidence=IBA

GO:0009952 "anterior/posterior pattern specification" evidence=IBA

GO:0021587 "cerebellum morphogenesis" evidence=IBA

GO:0021794 "thalamus development" evidence=IBA

GO:0021987 "cerebral cortex development" evidence=IBA

GO:0030278 "regulation of ossification" evidence=IBA

GO:0030326 "embryonic limb morphogenesis" evidence=IBA

GO:0030901 "midbrain development" evidence=IBA

GO:0030917 "midbrain-hindbrain boundary development" evidence=IBA

GO:0034185 "apolipoprotein binding" evidence=IBA

GO:0035261 "external genitalia morphogenesis" evidence=IBA

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IBA

GO:0042813 "Wnt-activated receptor activity" evidence=IBA

GO:0043025 "neuronal cell body" evidence=IBA

GO:0043235 "receptor complex" evidence=IBA

GO:0045202 "synapse" evidence=IBA

GO:0045598 "regulation of fat cell differentiation" evidence=IBA

GO:0046849 "bone remodeling" evidence=IBA

GO:0048596 "embryonic camera-type eye morphogenesis" evidence=IBA

GO:0060021 "palate development" evidence=IBA

GO:0060026 "convergent extension" evidence=IBA

GO:0060059 "embryonic retina morphogenesis in camera-type eye" evidence=IBA

GO:0060325 "face morphogenesis" evidence=IBA

GO:0060349 "bone morphogenesis" evidence=IBA

GO:0060444 "branching involved in mammary gland duct morphogenesis" evidence=IBA

GO:0060535 "trachea cartilage morphogenesis" evidence=IBA

GO:0090009 "primitive streak formation" evidence=IBA

GO:0090118 "receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport" evidence=IBA

GO:0090244 "Wnt receptor signaling pathway involved in somitogenesis" evidence=IBA

GO:0090245 "axis elongation involved in somitogenesis" evidence=IBA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IMP;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005041 "low-density lipoprotein receptor activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016055 "Wnt receptor signaling pathway" evidence=IMP;IDA

GO:2000055 "positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification" evidence=IDA

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IDA

GO:0034392 "negative regulation of smooth muscle cell apoptotic process" evidence=IMP

GO:0045787 "positive regulation of cell cycle" evidence=IMP

GO:0044340 "canonical Wnt receptor signaling pathway involved in regulation of cell proliferation" evidence=IC

GO:0005901 "caveola" evidence=IDA

GO:0019534 "toxin transporter activity" evidence=IMP

GO:0001933 "negative regulation of protein phosphorylation" evidence=IMP

GO:0006469 "negative regulation of protein kinase activity" evidence=IMP

GO:0019210 "kinase inhibitor activity" evidence=IMP

GO:0017147 "Wnt-protein binding" evidence=IPI

GO:0071936 "coreceptor activity involved in Wnt receptor signaling pathway" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0071397 "cellular response to cholesterol" evidence=IMP

GO:0044332 "Wnt receptor signaling pathway involved in dorsal/ventral axis specification" evidence=IDA

GO:0014033 "neural crest cell differentiation" evidence=IDA

GO:0044335 "canonical Wnt receptor signaling pathway involved in neural crest cell differentiation" evidence=IC

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP

GO:0014029 "neural crest formation" evidence=IDA

GO:0005109 "frizzled binding" evidence=IPI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0009986 "cell surface" evidence=IDA

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0005102 "receptor binding" evidence=IPI

GO:0071901 "negative regulation of protein serine/threonine kinase activity" evidence=IDA

MGI|MGI:1278315 Lrp5 "low density lipoprotein receptor-related protein 5" [Mus musculus (taxid:10090)]

 Score = 221 (82.9 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 41/70 (58%), Positives = 57/70 (81%)

Query:     6 GVRLVDNF-TCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQ 64
             GV+L DN  TC  G++E+LLL +RTD+ +ISLDTPD T+++L V  ++HAIAID+DP+E 
Sbjct:   325 GVQLQDNGKTCKTGAEEVLLLARRTDLRRISLDTPDFTDIVLQVGDIRHAIAIDYDPLEG 384

Query:    65 HLYWTDDEAR 74
             ++YWTDDE R
Sbjct:   385 YVYWTDDEVR 394

GO:0001702 "gastrulation with mouth forming second" evidence=IGI

GO:0001944 "vasculature development" evidence=IMP

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=ISO

GO:0002076 "osteoblast development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005739 "mitochondrion" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO;IBA

GO:0006007 "glucose catabolic process" evidence=ISO

GO:0006897 "endocytosis" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IMP

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IMP

GO:0008217 "regulation of blood pressure" evidence=ISO

GO:0008284 "positive regulation of cell proliferation" evidence=ISO

GO:0009952 "anterior/posterior pattern specification" evidence=IGI

GO:0015026 "coreceptor activity" evidence=IBA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=ISO;IGI;IDA

GO:0017147 "Wnt-protein binding" evidence=IPI

GO:0030278 "regulation of ossification" evidence=IBA

GO:0033690 "positive regulation of osteoblast proliferation" evidence=IMP

GO:0035019 "somatic stem cell maintenance" evidence=IMP

GO:0035108 "limb morphogenesis" evidence=IGI

GO:0035426 "extracellular matrix-cell signaling" evidence=IDA

GO:0042074 "cell migration involved in gastrulation" evidence=IGI

GO:0042632 "cholesterol homeostasis" evidence=ISO;IBA

GO:0042733 "embryonic digit morphogenesis" evidence=IGI

GO:0042813 "Wnt-activated receptor activity" evidence=IDA

GO:0042981 "regulation of apoptotic process" evidence=IMP

GO:0043235 "receptor complex" evidence=ISO;IBA

GO:0044332 "Wnt receptor signaling pathway involved in dorsal/ventral axis specification" evidence=ISO;IBA

GO:0045598 "regulation of fat cell differentiation" evidence=IBA

GO:0045600 "positive regulation of fat cell differentiation" evidence=ISO

GO:0045668 "negative regulation of osteoblast differentiation" evidence=ISO

GO:0045840 "positive regulation of mitosis" evidence=ISO

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISO;IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISO;IBA

GO:0046849 "bone remodeling" evidence=IGI;IMP

GO:0046850 "regulation of bone remodeling" evidence=IMP

GO:0048539 "bone marrow development" evidence=ISO;IBA

GO:0048596 "embryonic camera-type eye morphogenesis" evidence=IBA

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0060033 "anatomical structure regression" evidence=IMP

GO:0060042 "retina morphogenesis in camera-type eye" evidence=ISO

GO:0060059 "embryonic retina morphogenesis in camera-type eye" evidence=IBA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=ISO;IMP;IDA

GO:0060348 "bone development" evidence=IMP

GO:0060349 "bone morphogenesis" evidence=ISO;IBA

GO:0060444 "branching involved in mammary gland duct morphogenesis" evidence=IMP

GO:0060603 "mammary gland duct morphogenesis" evidence=IGI

GO:0060612 "adipose tissue development" evidence=ISO;IBA

GO:0060764 "cell-cell signaling involved in mammary gland development" evidence=IMP

GO:0060828 "regulation of canonical Wnt receptor signaling pathway" evidence=ISO

GO:0061178 "regulation of insulin secretion involved in cellular response to glucose stimulus" evidence=IMP

GO:0061299 "retina vasculature morphogenesis in camera-type eye" evidence=IGI;IMP

GO:0061304 "retinal blood vessel morphogenesis" evidence=ISO;IBA

GO:0071901 "negative regulation of protein serine/threonine kinase activity" evidence=ISO

UNIPROTKB|F1MDE1 LRP6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 219 (82.2 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 40/70 (57%), Positives = 57/70 (81%)

Query:     6 GVRLVDNF-TCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQ 64
             GV L++N  TC +G+ E+LLL +RTD+ +ISLDTPD T+++L +  ++HAIAID+DPVE 
Sbjct:   304 GVTLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG 363

Query:    65 HLYWTDDEAR 74
             ++YWTDDE R
Sbjct:   364 YIYWTDDEVR 373

GO:2000168 "negative regulation of planar cell polarity pathway involved in neural tube closure" evidence=IEA

GO:2000166 "negative regulation of planar cell polarity pathway involved in pericardium morphogenesis" evidence=IEA

GO:2000164 "negative regulation of planar cell polarity pathway involved in outflow tract morphogenesis" evidence=IEA

GO:2000162 "negative regulation of planar cell polarity pathway involved in cardiac right atrium morphogenesis" evidence=IEA

GO:2000151 "negative regulation of planar cell polarity pathway involved in cardiac muscle tissue morphogenesis" evidence=IEA

GO:2000149 "negative regulation of planar cell polarity pathway involved in ventricular septum morphogenesis" evidence=IEA

GO:2000055 "positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification" evidence=IEA

GO:0090263 "positive regulation of canonical Wnt receptor signaling pathway" evidence=IEA

GO:0090245 "axis elongation involved in somitogenesis" evidence=IEA

GO:0090244 "Wnt receptor signaling pathway involved in somitogenesis" evidence=IEA

GO:0090118 "receptor-mediated endocytosis of low-density lipoprotein particle involved in cholesterol transport" evidence=IEA

GO:0090009 "primitive streak formation" evidence=IEA

GO:0071936 "coreceptor activity involved in Wnt receptor signaling pathway" evidence=IEA

GO:0071901 "negative regulation of protein serine/threonine kinase activity" evidence=IEA

GO:0071542 "dopaminergic neuron differentiation" evidence=IEA

GO:0071397 "cellular response to cholesterol" evidence=IEA

GO:0061324 "canonical Wnt receptor signaling pathway involved in positive regulation of cardiac outflow tract cell proliferation" evidence=IEA

GO:0061310 "canonical Wnt receptor signaling pathway involved in cardiac neural crest cell differentiation involved in heart development" evidence=IEA

GO:0060596 "mammary placode formation" evidence=IEA

GO:0060535 "trachea cartilage morphogenesis" evidence=IEA

GO:0060444 "branching involved in mammary gland duct morphogenesis" evidence=IEA

GO:0060325 "face morphogenesis" evidence=IEA

GO:0060284 "regulation of cell development" evidence=IEA

GO:0060059 "embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0060026 "convergent extension" evidence=IEA

GO:0060021 "palate development" evidence=IEA

GO:0051593 "response to folic acid" evidence=IEA

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0050680 "negative regulation of epithelial cell proliferation" evidence=IEA

GO:0048705 "skeletal system morphogenesis" evidence=IEA

GO:0048596 "embryonic camera-type eye morphogenesis" evidence=IEA

GO:0046849 "bone remodeling" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045787 "positive regulation of cell cycle" evidence=IEA

GO:0045780 "positive regulation of bone resorption" evidence=IEA

GO:0045778 "positive regulation of ossification" evidence=IEA

GO:0045599 "negative regulation of fat cell differentiation" evidence=IEA

GO:0044332 "Wnt receptor signaling pathway involved in dorsal/ventral axis specification" evidence=IEA

GO:0043065 "positive regulation of apoptotic process" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0042475 "odontogenesis of dentin-containing tooth" evidence=IEA

GO:0042074 "cell migration involved in gastrulation" evidence=IEA

GO:0036342 "post-anal tail morphogenesis" evidence=IEA

GO:0035261 "external genitalia morphogenesis" evidence=IEA

GO:0035116 "embryonic hindlimb morphogenesis" evidence=IEA

GO:0035115 "embryonic forelimb morphogenesis" evidence=IEA

GO:0034392 "negative regulation of smooth muscle cell apoptotic process" evidence=IEA

GO:0034185 "apolipoprotein binding" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0030917 "midbrain-hindbrain boundary development" evidence=IEA

GO:0030901 "midbrain development" evidence=IEA

GO:0021943 "formation of radial glial scaffolds" evidence=IEA

GO:0021874 "Wnt receptor signaling pathway involved in forebrain neuroblast division" evidence=IEA

GO:0021861 "forebrain radial glial cell differentiation" evidence=IEA

GO:0021795 "cerebral cortex cell migration" evidence=IEA

GO:0021794 "thalamus development" evidence=IEA

GO:0021587 "cerebellum morphogenesis" evidence=IEA

GO:0019534 "toxin transporter activity" evidence=IEA

GO:0019210 "kinase inhibitor activity" evidence=IEA

GO:0017147 "Wnt-protein binding" evidence=IEA

GO:0014029 "neural crest formation" evidence=IEA

GO:0009986 "cell surface" evidence=IEA

GO:0009880 "embryonic pattern specification" evidence=IEA

GO:0005901 "caveola" evidence=IEA

GO:0005769 "early endosome" evidence=IEA

GO:0005109 "frizzled binding" evidence=IEA

GO:0005041 "low-density lipoprotein receptor activity" evidence=IEA

GO:0003344 "pericardium morphogenesis" evidence=IEA

GO:0002053 "positive regulation of mesenchymal cell proliferation" evidence=IEA

GO:0001947 "heart looping" evidence=IEA

GO:0001843 "neural tube closure" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1N1K8 LRP5 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 219 (82.2 bits), Expect = 1.8e-16, P = 1.8e-16
 Identities = 41/70 (58%), Positives = 57/70 (81%)

Query:     6 GVRLVDNF-TCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQ 64
             GV+L DN  TC  G++E+LLL +RTD+ +ISLDTPD T+++L V  ++HAIAID+DP+E 
Sbjct:   322 GVQLQDNGQTCKAGAEEVLLLARRTDLRRISLDTPDFTDIVLQVDDIRHAIAIDYDPLEG 381

Query:    65 HLYWTDDEAR 74
             ++YWTDDE R
Sbjct:   382 YVYWTDDEVR 391

GO:0061299 "retina vasculature morphogenesis in camera-type eye" evidence=IEA

GO:0061178 "regulation of insulin secretion involved in cellular response to glucose stimulus" evidence=IEA

GO:0060764 "cell-cell signaling involved in mammary gland development" evidence=IEA

GO:0060444 "branching involved in mammary gland duct morphogenesis" evidence=IEA

GO:0060348 "bone development" evidence=IEA

GO:0060070 "canonical Wnt receptor signaling pathway" evidence=IEA

GO:0060033 "anatomical structure regression" evidence=IEA

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0046850 "regulation of bone remodeling" evidence=IEA

GO:0046849 "bone remodeling" evidence=IEA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEA

GO:0042813 "Wnt-activated receptor activity" evidence=IEA

GO:0042733 "embryonic digit morphogenesis" evidence=IEA

GO:0042074 "cell migration involved in gastrulation" evidence=IEA

GO:0035426 "extracellular matrix-cell signaling" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0033690 "positive regulation of osteoblast proliferation" evidence=IEA

GO:0017147 "Wnt-protein binding" evidence=IEA

GO:0009952 "anterior/posterior pattern specification" evidence=IEA

GO:0008203 "cholesterol metabolic process" evidence=IEA

GO:0006917 "induction of apoptosis" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0002076 "osteoblast development" evidence=IEA

GO:0001702 "gastrulation with mouth forming second" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O75581	LRP6_HUMAN	No assigned EC number	0.5714	0.8518	0.0427	yes	N/A
O88572	LRP6_MOUSE	No assigned EC number	0.5714	0.8518	0.0427	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	81
KOG1214|consensus	1289		99.18
KOG1215|consensus	877		99.1
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	98.38
PF12662	24	cEGF: Complement Clr-like EGF-like	97.81
PF14670	36	FXa_inhibition: Coagulation Factor Xa inhibitory s	97.61
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	97.07
KOG1215|consensus	877		96.7
PF09064	34	Tme5_EGF_like: Thrombomodulin like fifth domain, E	96.3
KOG1214|consensus	1289		96.19
PF02822	26	Antistasin: Antistasin family; InterPro: IPR004094	93.64
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	93.51
KOG4659|consensus	1899		92.5
PF07645	42	EGF_CA: Calcium-binding EGF domain; InterPro: IPR0	91.61
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	91.26
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	88.69
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	87.41
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	85.05
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	82.72
KOG1520|consensus	376		80.92
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	80.68

>KOG1214|consensus

Probab=99.18  E-value=8.8e-11  Score=86.38  Aligned_cols=69  Identities=26%  Similarity=0.349  Sum_probs=56.9

Q ss_pred             CCCCCCCC---CCcEEEEEeCCcEEEEeCCCCCcee----eEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEeec
Q psy13631         11 DNFTCANG---SQEMLLLVQRTDICKISLDTPDHTN----VMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus        11 d~~tC~~~---~~~~Ll~s~~~~I~~i~l~~~~~~~----~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      ++.+|...   ...||||+++..|.++++++..+..    .++.+++ +-+++||||+++++|||+|+...+|.|+|
T Consensus       978 p~~~~~v~p~~~gt~LL~aqg~~I~~lplng~~~~K~~ak~~l~~p~-~IiVGidfDC~e~mvyWtDv~g~SI~ras 1053 (1289)
T KOG1214|consen  978 PTPRPDVTPPSVGTFLLYAQGQQIGYLPLNGTRLQKDAAKTLLSLPG-SIIVGIDFDCRERMVYWTDVAGRSISRAS 1053 (1289)
T ss_pred             CCCCCCCcCCCCcceEEEeccceEEEeecCcchhchhhhhceEeccc-ceeeeeecccccceEEEeecCCCcccccc
Confidence            66777722   3569999999999999999887543    2244455 77899999999999999999999999987

>KOG1215|consensus

Probab=99.10  E-value=5.6e-10  Score=82.89  Aligned_cols=75  Identities=33%  Similarity=0.603  Sum_probs=66.3

Q ss_pred             CCCCceEEc-CCCCCC--CCCCcEEEEEeCCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEe
Q psy13631          2 FHFYGVRLV-DNFTCA--NGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSG   78 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~--~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r   78 (81)
                      -|++||.|. ++  |+  ..+++||+++++.+|++++++..   ....|+.++.+++++|+|..++++||+|...+.|.+
T Consensus       389 ~c~~g~~~~~~~--c~~~~~~~~~l~~s~~~~ir~~~~~~~---~~~~p~~~~~~~~~~d~d~~~~~i~~~d~~~~~i~~  463 (877)
T KOG1215|consen  389 ACSPGYELRLDK--CEASDQPEAFLLFSNRHDIRRISLDCS---DVSRPLEGIKNAVALDFDVLNNRIYWADLSDEKICR  463 (877)
T ss_pred             ecCCCcEeccCC--ceecCCCCcEEEEecCccceecccCCC---cceEEccCCccceEEEEEecCCEEEEEeccCCeEee
Confidence            499999999 87  76  44899999999999999999986   456677788899999999999999999999999998


Q ss_pred             ecC
Q psy13631         79 ESH   81 (81)
Q Consensus        79 ~s~   81 (81)
                      +++
T Consensus       464 ~~~  466 (877)
T KOG1215|consen  464 ASQ  466 (877)
T ss_pred             ecc
Confidence            763

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=98.38  E-value=1.4e-06  Score=41.61  Aligned_cols=32  Identities=28%  Similarity=0.361  Sum_probs=28.0

Q ss_pred             CCccceEEEEEeCCCCEEEEEECCCCcEEeec
Q psy13631         49 VGVKHAIAIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus        49 ~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      .++..+.++++|+.++++||+|.....|.|+.
T Consensus         6 ~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~   37 (43)
T smart00135        6 EGLGHPNGLAVDWIEGRLYWTDWGLDVIEVAN   37 (43)
T ss_pred             CCCCCcCEEEEeecCCEEEEEeCCCCEEEEEe
Confidence            46777888999999999999999999999864

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF12662 cEGF: Complement Clr-like EGF-like

Probab=97.81  E-value=9.9e-06  Score=35.05  Aligned_cols=15  Identities=27%  Similarity=0.310  Sum_probs=14.1

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|. |+++|.
T Consensus         5 ~C~~Gy~l~~d~~~C~   20 (24)
T PF12662_consen    5 SCPPGYQLSPDGRSCE   20 (24)
T ss_pred             eCCCCCcCCCCCCccc
Confidence            499999999 999998

>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A

Probab=97.61  E-value=3.1e-05  Score=36.61  Aligned_cols=14  Identities=36%  Similarity=0.411  Sum_probs=11.1

Q ss_pred             CCCCceEEc-CCCCC
Q psy13631          2 FHFYGVRLV-DNFTC   15 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC   15 (81)
                      .||+||+|+ |+++|
T Consensus        22 ~C~~Gy~L~~D~~tC   36 (36)
T PF14670_consen   22 SCPPGYKLAEDGRTC   36 (36)
T ss_dssp             E-STTEEE-TTSSSE
T ss_pred             ECCCCCEECcCCCCC
Confidence            499999999 99998

...

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=97.07  E-value=0.00076  Score=32.66  Aligned_cols=17  Identities=24%  Similarity=0.491  Sum_probs=15.0

Q ss_pred             CEEEEEECCCC-cEEeec
Q psy13631         64 QHLYWTDDEAR-NKSGES   80 (81)
Q Consensus        64 ~~iyW~d~~~~-~I~r~s   80 (81)
                      ++|||+|...+ .|.++.
T Consensus         1 ~~iYWtD~~~~~~I~~a~   18 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERAN   18 (42)
T ss_dssp             TEEEEEETTTTEEEEEEE
T ss_pred             CEEEEEECCCCcEEEEEE
Confidence            58999999999 999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>KOG1215|consensus

Probab=96.70  E-value=0.0028  Score=47.80  Aligned_cols=40  Identities=35%  Similarity=0.411  Sum_probs=34.1

Q ss_pred             CCCCceEEc-CCCCCCCCCCcEEEEEeCCcEEEEeCCCCCce
Q psy13631          2 FHFYGVRLV-DNFTCANGSQEMLLLVQRTDICKISLDTPDHT   42 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~~~~~~~Ll~s~~~~I~~i~l~~~~~~   42 (81)
                      -||+|+.|. ++++|.. +..+++++....|..+..+.....
T Consensus       694 ~c~~~~~l~~~~~~C~~-~~~~~~~~~~~~~~~~~~~~~~~~  734 (877)
T KOG1215|consen  694 ACPEGYRLSPDGKSCSS-PEGYLLITSRTGIPCISLDSELSP  734 (877)
T ss_pred             eCCCCCeecCCCCeecC-cccccccccccccceeecCcccCC
Confidence            499999999 9999997 777889999999999888775443

>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet

Probab=96.30  E-value=0.0027  Score=29.44  Aligned_cols=14  Identities=29%  Similarity=0.349  Sum_probs=10.4

Q ss_pred             CCCCceEEcCCCCC
Q psy13631          2 FHFYGVRLVDNFTC   15 (81)
Q Consensus         2 ~~~~Gy~L~d~~tC   15 (81)
                      +||+||.|+++.-|
T Consensus        21 ~CPeGyIlde~~~c   34 (34)
T PF09064_consen   21 FCPEGYILDEGSMC   34 (34)
T ss_pred             eCCCceEecCCccC
Confidence            79999999844333

Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane

>KOG1214|consensus

Probab=96.19  E-value=0.011  Score=45.01  Aligned_cols=57  Identities=19%  Similarity=0.353  Sum_probs=43.5

Q ss_pred             EEEEEe--CCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEeec
Q psy13631         22 MLLLVQ--RTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus        22 ~Ll~s~--~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      .+.++.  +.+|++-+|++.+.+.++-  +++.++-+|+.|....-|||+|...++|.-|+
T Consensus      1038 mvyWtDv~g~SI~rasL~G~Ep~ti~n--~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~ 1096 (1289)
T KOG1214|consen 1038 MVYWTDVAGRSISRASLEGAEPETIVN--SGLISPEGIAVDHIRRNMYWTDSVLDKIEVAL 1096 (1289)
T ss_pred             eEEEeecCCCccccccccCCCCceeec--ccCCCccceeeeeccceeeeeccccchhheee
Confidence            444444  5688898998776544332  58888888888889999999999999987664

>PF02822 Antistasin: Antistasin family; InterPro: IPR004094 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively

Probab=93.64  E-value=0.043  Score=23.93  Aligned_cols=12  Identities=25%  Similarity=0.553  Sum_probs=6.1

Q ss_pred             CCCCCceEEc-CC
Q psy13631          1 MFHFYGVRLV-DN   12 (81)
Q Consensus         1 ~~~~~Gy~L~-d~   12 (81)
                      |.||.||+++ +|
T Consensus         8 ~~C~~Gf~~D~~G   20 (26)
T PF02822_consen    8 MYCPYGFKTDENG   20 (26)
T ss_dssp             ---TT-EEE-TTS
T ss_pred             CcCCCcccCCCCC
Confidence            6899999998 66

In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This group of serine protease inhibitors belong to MEROPS inhibitor family I15, clan IO. They inhibit serine peptidases of the S1 family (IPR001254 from INTERPRO) [] and are characterised by a well conserved pattern of cysteine residues. Many of the proteins that belong to this family are anti-coagulants.; GO: 0004867 serine-type endopeptidase inhibitor activity; PDB: 1HIA_I 1BX8_A 1BX7_A 3BG4_D 1C9P_B 1EJA_B 1SKZ_A.

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=93.51  E-value=0.17  Score=32.32  Aligned_cols=25  Identities=28%  Similarity=0.555  Sum_probs=22.0

Q ss_pred             EEEEeCCCCEEEEEECCCCcEEeec
Q psy13631         56 AIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus        56 ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      +.-||..++.+||+|+..+.|.|..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~   28 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVD   28 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEE
Confidence            4678999999999999999999864

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG4659|consensus

Probab=92.50  E-value=0.63  Score=37.60  Aligned_cols=62  Identities=24%  Similarity=0.235  Sum_probs=48.9

Q ss_pred             CCcEEEEEeCCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEeec
Q psy13631         19 SQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus        19 ~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      +.-.|++..-+-||+|.-+++..+-..+.+.+...-.=++.++.++.||-+|...+.|.|.+
T Consensus       374 ~DGSl~VGDfNyIRRI~~dg~v~tIl~L~~t~~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~  435 (1899)
T KOG4659|consen  374 PDGSLIVGDFNYIRRISQDGQVSTILTLGLTDTSHSYYIAVSPVDGTLYVSDPLSKQVWRVS  435 (1899)
T ss_pred             CCCcEEEccchheeeecCCCceEEEEEecCCCccceeEEEecCcCceEEecCCCcceEEEec
Confidence            34456667778999999998765545554456666778999999999999999999999976

>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins

Probab=91.61  E-value=0.088  Score=25.17  Aligned_cols=14  Identities=36%  Similarity=0.325  Sum_probs=11.7

Q ss_pred             CCCCceEEc-CCCCC
Q psy13631          2 FHFYGVRLV-DNFTC   15 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC   15 (81)
                      .|++||++. ++++|
T Consensus        28 ~C~~Gy~~~~~~~~C   42 (42)
T PF07645_consen   28 SCPPGYELNDDGTTC   42 (42)
T ss_dssp             EESTTEEECTTSSEE
T ss_pred             eCCCCcEECCCCCcC
Confidence            389999988 88776

Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=91.26  E-value=0.88  Score=30.92  Aligned_cols=44  Identities=18%  Similarity=0.400  Sum_probs=30.4

Q ss_pred             CcEEEEeCCCCC------------ceeeEEEeCCccceEEEEEeCCCCEEEEEECCCC
Q psy13631         29 TDICKISLDTPD------------HTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEAR   74 (81)
Q Consensus        29 ~~I~~i~l~~~~------------~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~   74 (81)
                      -.|.+++.+++.            ...+.  ..|+.|+.+++||+.++.||-+|...+
T Consensus       148 G~ilri~~dG~~p~dnP~~~~~~~~~~i~--A~GlRN~~~~~~d~~tg~l~~~d~G~~  203 (331)
T PF07995_consen  148 GKILRIDPDGSIPADNPFVGDDGADSEIY--AYGLRNPFGLAFDPNTGRLWAADNGPD  203 (331)
T ss_dssp             TEEEEEETTSSB-TTSTTTTSTTSTTTEE--EE--SEEEEEEEETTTTEEEEEEE-SS
T ss_pred             ceEEEecccCcCCCCCccccCCCceEEEE--EeCCCccccEEEECCCCcEEEEccCCC
Confidence            368888887651            11222  359999999999999999999997654

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=88.69  E-value=2.9  Score=26.63  Aligned_cols=45  Identities=20%  Similarity=0.231  Sum_probs=33.5

Q ss_pred             EEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        31 I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      |.+++.+. . ...+.  .++..+-+|.|++.++.+|++|...+.|.+.
T Consensus       117 v~~~~~~~-~-~~~~~--~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~  161 (246)
T PF08450_consen  117 VYRIDPDG-K-VTVVA--DGLGFPNGIAFSPDGKTLYVADSFNGRIWRF  161 (246)
T ss_dssp             EEEEETTS-E-EEEEE--EEESSEEEEEEETTSSEEEEEETTTTEEEEE
T ss_pred             eEEECCCC-e-EEEEe--cCcccccceEECCcchheeecccccceeEEE
Confidence            66677662 2 22222  4677778999999999999999999999874

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=87.41  E-value=3.7  Score=29.12  Aligned_cols=26  Identities=23%  Similarity=0.538  Sum_probs=23.2

Q ss_pred             CCccceEEEEEeCCCCEEEEEECCCC
Q psy13631         49 VGVKHAIAIDWDPVEQHLYWTDDEAR   74 (81)
Q Consensus        49 ~~~~~~~ald~d~~~~~iyW~d~~~~   74 (81)
                      -|+.|+++++||+.++.+|-++...+
T Consensus       236 ~G~RN~qGl~w~P~tg~Lw~~e~g~d  261 (399)
T COG2133         236 YGHRNPQGLAWHPVTGALWTTEHGPD  261 (399)
T ss_pred             eccCCccceeecCCCCcEEEEecCCC
Confidence            48999999999999999999987763

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=85.05  E-value=4.8  Score=27.65  Aligned_cols=44  Identities=11%  Similarity=0.207  Sum_probs=30.3

Q ss_pred             cEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEE
Q psy13631         30 DICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKS   77 (81)
Q Consensus        30 ~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~   77 (81)
                      .|.+++.++...+ ++  ..++.++.+++||. ++.+|.+|.......
T Consensus       165 ~i~r~~pdg~~~e-~~--a~G~rnp~Gl~~d~-~G~l~~tdn~~~~~~  208 (367)
T TIGR02604       165 GLFRYNPDGGKLR-VV--AHGFQNPYGHSVDS-WGDVFFCDNDDPPLC  208 (367)
T ss_pred             eEEEEecCCCeEE-EE--ecCcCCCccceECC-CCCEEEEccCCCcee
Confidence            4777777765432 22  36899999999998 567888887544333

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=82.72  E-value=2.9  Score=17.99  Aligned_cols=26  Identities=12%  Similarity=0.166  Sum_probs=20.3

Q ss_pred             cceEEEEEeCCCCEEEEEECCCCcEEe
Q psy13631         52 KHAIAIDWDPVEQHLYWTDDEARNKSG   78 (81)
Q Consensus        52 ~~~~ald~d~~~~~iyW~d~~~~~I~r   78 (81)
                      ..+.+|..| .++.||=+|.....|..
T Consensus         2 ~~P~gvav~-~~g~i~VaD~~n~rV~v   27 (28)
T PF01436_consen    2 NYPHGVAVD-SDGNIYVADSGNHRVQV   27 (28)
T ss_dssp             SSEEEEEEE-TTSEEEEEECCCTEEEE
T ss_pred             cCCcEEEEe-CCCCEEEEECCCCEEEE
Confidence            356677788 78899999988887753

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>KOG1520|consensus

Probab=80.92  E-value=6.2  Score=27.81  Aligned_cols=52  Identities=19%  Similarity=0.241  Sum_probs=32.9

Q ss_pred             EEEEEeCC-cEEEEeCCCCCceeeEEEeCCcc--ceEEEEEeCCCCEEEEEECCCC
Q psy13631         22 MLLLVQRT-DICKISLDTPDHTNVMLPVVGVK--HAIAIDWDPVEQHLYWTDDEAR   74 (81)
Q Consensus        22 ~Ll~s~~~-~I~~i~l~~~~~~~~~~~~~~~~--~~~ald~d~~~~~iyW~d~~~~   74 (81)
                      =|++|... .+..++..+...+....++.|..  -.=++|.|. ++.|||+|...+
T Consensus       128 dL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~-~g~vyFTDSSsk  182 (376)
T KOG1520|consen  128 DLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDP-EGVVYFTDSSSK  182 (376)
T ss_pred             eEEEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcC-CCeEEEeccccc
Confidence            46667664 67777777665333333333422  234688888 899999998653

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=80.68  E-value=6  Score=28.50  Aligned_cols=49  Identities=12%  Similarity=0.224  Sum_probs=33.5

Q ss_pred             cEEEEeCCCCCce--------eeEEEeCCccceEEEEEeCCCCEEEEEECCC---CcEEee
Q psy13631         30 DICKISLDTPDHT--------NVMLPVVGVKHAIAIDWDPVEQHLYWTDDEA---RNKSGE   79 (81)
Q Consensus        30 ~I~~i~l~~~~~~--------~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~---~~I~r~   79 (81)
                      .|.||+.+++.-.        ..-+-.-|++|+.+++||+ ++.||.+|...   +.|.+.
T Consensus       200 kILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp-~G~Lw~~e~Gp~~~DEiN~I  259 (454)
T TIGR03606       200 KVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTP-DGTLYASEQGPNSDDELNII  259 (454)
T ss_pred             EEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECC-CCCEEEEecCCCCCcEEEEe
Confidence            6888888865210        0112235899999999999 78999999865   445543

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	81
4dg6_A	616	Crystal Structure Of Domains 1 And 2 Of Lrp6 Length		1e-18
3s94_A	619	Crystal Structure Of Lrp6-E1e2 Length = 619		1e-18
4a0p_A	628	Crystal Structure Of Lrp6p3e3p4e4 Length = 628		4e-07
3s8v_A	623	Crystal Structure Of Lrp6-Dkk1 Complex Length = 623		5e-07
3s2k_A	629	Structural Basis Of Wnt Signaling Inhibition By Dic		5e-07

>pdb|4DG6|A Chain A, Crystal Structure Of Domains 1 And 2 Of Lrp6 Length = 616

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 6   GVRLVDNF-TCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQ 64
           GV+L++N  TC +G+ E+LLL +RTD+ +ISLDTPD T+++L +  ++HAIAID+DPVE 
Sbjct: 294 GVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG 353
Query: 65  HLYWTDDEAR 74
           ++YWTDDE R
Sbjct: 354 YIYWTDDEVR 363

>pdb|3S94|A Chain A, Crystal Structure Of Lrp6-E1e2 Length = 619

Iteration: 1
 Score = 87.8 bits (216), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 58/70 (82%), Gaps = 1/70 (1%)
Query: 6   GVRLVDNF-TCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQ 64
           GV+L++N  TC +G+ E+LLL +RTD+ +ISLDTPD T+++L +  ++HAIAID+DPVE 
Sbjct: 302 GVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEG 361
Query: 65  HLYWTDDEAR 74
           ++YWTDDE R
Sbjct: 362 YIYWTDDEVR 371

>pdb|4A0P|A Chain A, Crystal Structure Of Lrp6p3e3p4e4 Length = 628

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 20 QEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
          +  LL  +R DI +ISL+T ++ NV +P+ GVK A A+D+D  +  +YWTD
Sbjct: 6  EAFLLFSRRADIRRISLET-NNNNVAIPLTGVKEASALDFDVTDNRIYWTD 55

>pdb|3S8V|A Chain A, Crystal Structure Of Lrp6-Dkk1 Complex Length = 623

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 20 QEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
          +  LL  +R DI +ISL+T ++ NV +P+ GVK A A+D+D  +  +YWTD
Sbjct: 11 EAFLLFSRRADIRRISLET-NNNNVAIPLTGVKEASALDFDVTDNRIYWTD 60

>pdb|3S2K|A Chain A, Structural Basis Of Wnt Signaling Inhibition By Dickkopf Binding To Lrp56. Length = 629

Iteration: 1
 Score = 49.3 bits (116), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 35/51 (68%), Gaps = 1/51 (1%)
Query: 20 QEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
          +  LL  +R DI +ISL+T ++ NV +P+ GVK A A+D+D  +  +YWTD
Sbjct: 4  EAFLLFSRRADIRRISLET-NNNNVAIPLTGVKEASALDFDVTDNRIYWTD 53

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	81
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	2e-10
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	3e-10
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	6e-10
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	8e-10
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	2e-09
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	4e-09
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	6e-09
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	4e-05

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 53.7 bits (128), Expect = 2e-10
 Identities = 17/72 (23%), Positives = 35/72 (48%)

Query: 4   FYGVRLVDNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVE 63
                L  +    +     LL  Q++ I ++ +D     +++LP+  +++  AID+DP++
Sbjct: 292 PAHYSLNADNRTCSAPTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLD 351

Query: 64  QHLYWTDDEARN 75
           + LYW D     
Sbjct: 352 KQLYWIDSRQNM 363

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* Length = 628

 Score = 53.3 bits (127), Expect = 3e-10
 Identities = 22/55 (40%), Positives = 35/55 (63%), Gaps = 1/55 (1%)

Query: 20 QEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEAR 74
          +  LL  +R DI +ISL+T ++  V +P+ GVK A A+D+D  +  +YWTD   +
Sbjct: 6  EAFLLFSRRADIRRISLETNNNN-VAIPLTGVKEASALDFDVTDNRIYWTDISLK 59

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B Length = 318

 Score = 52.4 bits (125), Expect = 6e-10
 Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 18 GSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEAR 74
          GS  +LL   R D+  +        N  + V G++ A A+D+      +YW+D    
Sbjct: 2  GSAPLLLYANRRDLRLVDATN-GKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE 57

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 52.1 bits (124), Expect = 8e-10
 Identities = 36/64 (56%), Positives = 52/64 (81%)

Query: 11  DNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
           +  TC +G+ E+LLL +RTD+ +ISLDTPD T+++L +  ++HAIAID+DPVE ++YWTD
Sbjct: 308 NGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTD 367

Query: 71  DEAR 74
           DE R
Sbjct: 368 DEVR 371

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} Length = 619

 Score = 51.0 bits (121), Expect = 2e-09
 Identities = 13/60 (21%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 15 CANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEAR 74
            +    +LL   R D+  +        N  + V G++ A A+D+      +YW+D    
Sbjct: 4  HHHHHAPLLLYANRRDLRLVDATN-GKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEE 62

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 Length = 267

 Score = 50.2 bits (120), Expect = 4e-09
 Identities = 13/55 (23%), Positives = 22/55 (40%), Gaps = 3/55 (5%)

Query: 23 LLLVQRTDICKISLDTPDHTNV---MLPVVGVKHAIAIDWDPVEQHLYWTDDEAR 74
          LL  Q   I ++ L+              +  K  I + +D V++ +YWTD    
Sbjct: 4  LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEP 58

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 Length = 316

 Score = 49.7 bits (118), Expect = 6e-09
 Identities = 12/53 (22%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 22 MLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEAR 74
           L    R ++ K++LD  ++T++   +  +++ +A+D +     +YW+D   R
Sbjct: 3  YLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQR 52

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} Length = 349

 Score = 38.7 bits (89), Expect = 4e-05
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 11 DNFTC-ANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWT 69
          D  +C A G + +LL   R DI ++     ++T   L +  +++AIA+D+    + ++W+
Sbjct: 34 DRRSCKALGPEPVLLFANRIDIRQVLPHRSEYT---LLLNNLENAIALDFHHRRELVFWS 90

Query: 70 DDEARN 75
          D     
Sbjct: 91 DVTLDR 96

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	81
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.8
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.77
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.73
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.7
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.66
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.59
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.4
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.38
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.35
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.17
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.04
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.45
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.8
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.76
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	97.72
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.66
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.65
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	97.46
2wph_E	59	Coagulation factor IXA light chain; serine proteas	97.01
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	96.98
2bz6_L	53	Blood coagulation factor VIIA; serine protease, en	96.98
1kig_L	51	Factor XA; glycoprotein, serine protease, plasma,	96.91
1kli_L	69	Factor VIIA; extrinsic coagulation pathway, serine	96.7
2jkh_L	55	Factor X light chain; plasma, calcium, zymogen, se	96.67
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	96.44
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.64
1apq_A	53	Complement protease C1R; EGF, calcium binding, ser	95.55
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	95.24
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	94.13
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	94.02
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	93.64
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	93.48
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	91.75
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	91.53
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	91.41
2vh0_B	134	Activated factor XA light chain; serine protease,	91.13
1aut_L	114	Activated protein C; serine proteinase, plasma cal	90.73
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	90.62
2c4f_L	142	Coagulation factor VII precursor; blood coagulatio	90.61
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	90.47
1x7a_L	146	Coagulation factor IX, light chain; inhibition, bl	90.09
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	89.94
3kya_A	496	Putative phosphatase; structural genomics, joint c	89.8
1nfu_B	195	Coagulation factor XA, light chain; hydrolase; HET	89.36
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	87.62
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	87.5
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	87.13
3ssb_I	32	IMPI alpha, inducible metalloproteinase inhibitor	87.07
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	85.74
1z6c_A	87	Vitamin K-dependent protein S; EGF module, blood c	84.57
3f1s_B	283	Vitamin K-dependent protein Z; PZ, ZPI, complex, s	83.68
1uzk_A	162	Fibrillin-1; glycoprotein, extra-cellular matrix,	83.31
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	81.93
1eja_B	59	Bdellastasin; complex (hydrolase/inhibitor), hydro	81.05
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	80.73
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	80.65
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	80.64

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.80  E-value=1.8e-19  Score=127.70  Aligned_cols=79  Identities=49%  Similarity=0.837  Sum_probs=73.9

Q ss_pred             CCCCceEEc-CCCCCCCCCCcEEEEEeCCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEeec
Q psy13631          2 FHFYGVRLV-DNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      .||+||+|. |+++|+.++++||+|+++.+|+++++++......++|++++++++|||||+.+++|||+|...+.|+|++
T Consensus       298 ~C~~g~~l~~d~~~C~~~~~~~Ll~~~~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~  377 (619)
T 3s94_A          298 ACPTGVKLLENGKTCKDGATELLLLARRTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSF  377 (619)
T ss_dssp             ECCTTCCBCTTSSCBCSSCSEEEEEEESSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             eCCchheecccCcccCCCCceEEEEEcccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEE
Confidence            499999999 9999997789999999999999999998877777888899999999999999999999999999999975

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.77  E-value=1.8e-18  Score=122.83  Aligned_cols=78  Identities=27%  Similarity=0.528  Sum_probs=71.0

Q ss_pred             CCCCceEEc-CCCCCCCCCCcEEEEEeCCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEeec
Q psy13631          2 FHFYGVRLV-DNFTCANGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      .||+||.|. |+++|+. +++||+|+++++|+++.++.......++|++++++++|||||+.+++|||+|...++|+|+.
T Consensus       290 ~C~~g~~l~~d~~~C~~-~~~~Ll~s~~~~i~~i~l~~~~~~~~~l~~~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~  368 (628)
T 4a0p_A          290 GCPAHYSLNADNRTCSA-PTTFLLFSQKSAINRMVIDEQQSPDIILPIHSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQ  368 (628)
T ss_dssp             ECSTTCEECTTSSCEEC-CSSEEEEEETTEEEEECCCTTCCCCEECCCTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EcCCCcEecccCCcCcc-ccceeeeeccceEEEEecccccCceEEEEehhcCCceEEEEecCCCeEEEEecCcceEEEEE
Confidence            499999999 9999995 68899999999999999987655567788899999999999999999999999999999864

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.73  E-value=2.8e-17  Score=109.29  Aligned_cols=76  Identities=22%  Similarity=0.377  Sum_probs=67.2

Q ss_pred             CCCCceEEc-CCCCCC-CCCCcEEEEEeCCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631          2 FHFYGVRLV-DNFTCA-NGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~-~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      .|++||+|. |+++|+ .+++++|+|+++++|+++++++.....   .++++.++.+++||+.+++|||+|...++|.|+
T Consensus        24 ~C~~g~~l~~d~~~C~~~~~~~~ll~~~~~~I~~i~~~g~~~~~---~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~  100 (349)
T 3v64_C           24 WCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTL---LLNNLENAIALDFHHRRELVFWSDVTLDRILRA  100 (349)
T ss_dssp             ECCTTEEECTTSSCEEESSSCCEEEEECBSCEEEECTTSCCEEE---EECSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ECCCCccCCCCCCcccccccCceeEeecccceEEEeCCCCeeEE---eecCCCceEEEEEeccccEEEEEeccCCceEEE
Confidence            499999999 999999 678999999999999999998865432   336889999999999999999999999999986


Q ss_pred             c
Q psy13631         80 S   80 (81)
Q Consensus        80 s   80 (81)
                      .
T Consensus       101 ~  101 (349)
T 3v64_C          101 N  101 (349)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.70  E-value=1e-16  Score=108.39  Aligned_cols=76  Identities=22%  Similarity=0.434  Sum_probs=68.0

Q ss_pred             CCCCceEEc-CCCCCC-CCCCcEEEEEeCCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631          2 FHFYGVRLV-DNFTCA-NGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~-~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      .|++||.|. |+++|+ .++++||+|+++++|+++++++.....+   ++++.++++||||+.+++|||+|...++|+|+
T Consensus        63 ~C~~g~~~~~~~~~C~~~~~~~~ll~~~~~~I~~i~l~~~~~~~~---~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~  139 (400)
T 3p5b_L           63 QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICST  139 (400)
T ss_dssp             CCCTTCCCCTTTSSCCCSTTSCEEEEEETTEEEEECTTSCSCEEE---ECSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             eccccccccccccceeeccccceeEEeccceeEEEccCCcceeEe---ccccCcceEEeeeeccCceEEEecCCCeEEEE
Confidence            499999999 999999 6789999999999999999998765443   35889999999999999999999999999886


Q ss_pred             c
Q psy13631         80 S   80 (81)
Q Consensus        80 s   80 (81)
                      .
T Consensus       140 ~  140 (400)
T 3p5b_L          140 Q  140 (400)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.66  E-value=8.5e-16  Score=103.26  Aligned_cols=76  Identities=22%  Similarity=0.395  Sum_probs=67.2

Q ss_pred             CCCCceEEc-CCCCCC-CCCCcEEEEEeCCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631          2 FHFYGVRLV-DNFTCA-NGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~-~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      .|++||.|. |+++|+ .+++++|+|+++++|+++++++.....+   +.++.++.+++||+.+++|||+|...++|.|.
T Consensus        67 ~C~~g~~l~~d~~~C~~~~~~~~l~~~~~~~I~~i~~~~~~~~~~---~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~  143 (386)
T 3v65_B           67 WCEAGYELRPDRRSCKALGPEPVLLFANRIDIRQVLPHRSEYTLL---LNNLENAIALDFHHRRELVFWSDVTLDRILRA  143 (386)
T ss_dssp             ECCTTEEECTTSSCEEECSSCCEEEEECBSCEEEECTTSCCCEEE---ECSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             EECCCceEcCCCCeECCccccceeEeecCccceeeccCCCcEEEE---ecCCCccEEEEEecCCCeEEEEeCCCCcEEEE
Confidence            499999999 999999 6789999999999999999988654332   35889999999999999999999999999986


Q ss_pred             c
Q psy13631         80 S   80 (81)
Q Consensus        80 s   80 (81)
                      .
T Consensus       144 ~  144 (386)
T 3v65_B          144 N  144 (386)
T ss_dssp             E
T ss_pred             e
Confidence            4

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.59  E-value=8.3e-15  Score=106.48  Aligned_cols=76  Identities=22%  Similarity=0.431  Sum_probs=67.7

Q ss_pred             CCCCceEEc-CCCCCC-CCCCcEEEEEeCCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631          2 FHFYGVRLV-DNFTCA-NGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~-~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      .|++||+|. |+++|+ .++.++|+|+++++|++++++...+..++   .+++++++|+||..+++|||+|...++|+|+
T Consensus       375 ~C~~Gy~l~~~~~~C~~~~~~p~Ll~an~~~Ir~i~l~~~~~~~l~---~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~  451 (791)
T 3m0c_C          375 QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSLI---PNLRNVVALDTEVASNRIYWSDLSQRMICST  451 (791)
T ss_dssp             CCCSSEECCSSCCCCEETTSCCEEEEECBSSEEEECTTSCCCEEEE---CSCSSEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ecCCCCEeCCCCceeeecccccccccccccceeEeeccCCcceeee---cCCCceEEEeecccCCeeEEeeccceeEEEE
Confidence            499999999 999999 77899999999999999999987654432   5889999999999999999999999999886


Q ss_pred             c
Q psy13631         80 S   80 (81)
Q Consensus        80 s   80 (81)
                      .
T Consensus       452 ~  452 (791)
T 3m0c_C          452 Q  452 (791)
T ss_dssp             E
T ss_pred             e
Confidence            4

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.40  E-value=7.2e-14  Score=100.13  Aligned_cols=76  Identities=22%  Similarity=0.434  Sum_probs=65.2

Q ss_pred             CCCCceEEc-CCCCCC-CCCCcEEEEEeCCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631          2 FHFYGVRLV-DNFTCA-NGSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~-~~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      .|++||+|. |+++|+ .++.++|+|++++.|+++++++.....+   +.++.++++|+||+.+++|||+|...++|.|+
T Consensus       357 ~C~~G~~~~~~~~~C~~~~~~~~ll~~~~~~I~~id~~~~~~~~~---~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~  433 (699)
T 1n7d_A          357 QCEEGFQLDPHTKACKAVGSIAYLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICST  433 (699)
T ss_dssp             CCCSSCBCCSSCCCCBCCSSCCCBCCCCTTC-CEECTTSCCEECC---SCCCTTCCCCEEETTTTEEEECCTTTTSBEEE
T ss_pred             eeecccccCCCCCcccccccceeEEecCccceEEEeCCCCcceee---eccCcceEEEccccccCeEEEEecCCCeEEEE
Confidence            499999999 999999 7788999999999999999998654332   24678899999999999999999999999885


Q ss_pred             c
Q psy13631         80 S   80 (81)
Q Consensus        80 s   80 (81)
                      .
T Consensus       434 ~  434 (699)
T 1n7d_A          434 Q  434 (699)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.38  E-value=7.5e-13  Score=87.27  Aligned_cols=62  Identities=24%  Similarity=0.403  Sum_probs=52.1

Q ss_pred             CCCcEEEEEeCCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEeec
Q psy13631         18 GSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus        18 ~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      +++|||||+++++|+++++++... ...++++++.+++++|||+.+++|||+|+..++|.|+.
T Consensus         2 g~~p~ll~~~~~~I~~i~l~~~~~-~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~   63 (318)
T 3sov_A            2 GSAPLLLYANRRDLRLVDATNGKE-NATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE   63 (318)
T ss_dssp             --CCEEEEECEEEEEEEETTCTTS-CCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred             CCccEEEEEccCeEEEEECCCCce-EEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            689999999999999999998642 23345568899999999999999999999999999864

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.35  E-value=4.3e-12  Score=90.24  Aligned_cols=62  Identities=39%  Similarity=0.663  Sum_probs=55.0

Q ss_pred             CCCcEEEEEeCCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEeec
Q psy13631         18 GSQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus        18 ~~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      .|++||+|+++++|+++++++... ..++|+.+++++++||||+.+++|||+|...++|+|+.
T Consensus         4 ~p~~~Ll~s~~~~I~~i~l~~~~~-~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~   65 (628)
T 4a0p_A            4 VPEAFLLFSRRADIRRISLETNNN-NVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAF   65 (628)
T ss_dssp             -CCCEEEEEETTEEEEEESSCTTC-EEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCCcEEEEEeCCcEEEEECCCCCc-ceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEE
Confidence            489999999999999999997654 45667889999999999999999999999999999864

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.17  E-value=2.2e-10  Score=74.93  Aligned_cols=58  Identities=21%  Similarity=0.481  Sum_probs=50.6

Q ss_pred             CcEEEEEeCCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEeec
Q psy13631         20 QEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus        20 ~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      +|||||+++++|+++++++.....+ +  +++.++.+++||+.+++|||+|...++|.|..
T Consensus         1 ~~~ll~~~~~~I~~i~~~~~~~~~~-~--~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~   58 (316)
T 1ijq_A            1 IAYLFFTNRHEVRKMTLDRSEYTSL-I--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQ   58 (316)
T ss_dssp             CCEEEEECBSSEEEEETTSCCCEEE-E--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CCEEEEECCCeEEEEECCCcceEeh-h--cCCCceEEEEEEeCCCEEEEEECCCCcEEEEE
Confidence            5899999999999999998765443 2  47899999999999999999999999998863

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.04  E-value=6.3e-10  Score=79.01  Aligned_cols=61  Identities=21%  Similarity=0.360  Sum_probs=47.2

Q ss_pred             CCcEEEEEeCCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEeec
Q psy13631         19 SQEMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus        19 ~~~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      ..|+||++++++|+++++++... ...+++++++++++||||+.+++|||+|+..++|+|++
T Consensus         8 ~~~~~~~~~~~~I~~i~~~~~~~-~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~   68 (619)
T 3s94_A            8 HAPLLLYANRRDLRLVDATNGKE-NATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTE   68 (619)
T ss_dssp             --CCEEEECSSBEEEECCC----------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cCceEEEeccccEEEEeCCCCcc-eEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEE
Confidence            47899999999999999997531 23445578999999999999999999999999999864

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.45  E-value=9.5e-07  Score=55.61  Aligned_cols=59  Identities=24%  Similarity=0.401  Sum_probs=46.6

Q ss_pred             CcEEEEEeCCcEEEEeCCCCCce----eeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         20 QEMLLLVQRTDICKISLDTPDHT----NVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        20 ~~~Ll~s~~~~I~~i~l~~~~~~----~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      .++|+|++...|+++++++....    ...+.. ..+++.++++|+.+++|||+|...+.|.+.
T Consensus         1 ~~~l~~~~~~~I~~~~~~g~~~~~~~~~~~~~~-~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~   63 (267)
T 1npe_A            1 GTHLLFAQTGKIERLPLERNTMKKTEAKAFLHI-PAKVIIGLAFDCVDKVVYWTDISEPSIGRA   63 (267)
T ss_dssp             CEEEEEEEEEEEEEEEESSSCBCGGGCEEEEEE-EEEEEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CcEEEEEcCCeEEEEEecCcccccccceeeecC-CCCcEEEEEEecCCCEEEEEECCCCEEEEE
Confidence            37999999999999999986532    122221 236788999999999999999999988875

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.80  E-value=0.00023  Score=47.84  Aligned_cols=58  Identities=19%  Similarity=0.288  Sum_probs=45.8

Q ss_pred             CcEEEEEeC---CcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         20 QEMLLLVQR---TDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        20 ~~~Ll~s~~---~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      ..+|+++..   ..|.++++++.....++.  .++..+.+|.+|+.+++|||+|.....|.++
T Consensus       213 ~g~ly~td~~~~~~I~~~~~dG~~~~~~~~--~~l~~P~glavd~~~~~lY~aD~~~~~I~~~  273 (400)
T 3p5b_L          213 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSI  273 (400)
T ss_dssp             TTEEEEEECSSSCCEEEEETTSCSCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cCeEEEEeCCCCCEEEEEeCCCCccEEEEE--CCCCceEEEEEEeCCCEEEEEECCCCEEEEE
Confidence            357888872   479999999875433322  4678899999999999999999999999875

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.76  E-value=0.00031  Score=46.01  Aligned_cols=57  Identities=16%  Similarity=0.243  Sum_probs=45.0

Q ss_pred             cEEEEEe---CCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         21 EMLLLVQ---RTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        21 ~~Ll~s~---~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      -+|.++.   ...|.++++++.....++.  .++..+-+|.+|+.+++|||+|.....|.++
T Consensus       134 g~ly~td~~~~~~I~r~~~dG~~~~~~~~--~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~  193 (318)
T 3sov_A          134 GFMYWTDWGEVPKIERAGMDGSSRFIIIN--SEIYWPNGLTLDYEEQKLYWADAKLNFIHKS  193 (318)
T ss_dssp             TEEEEEECSSSCEEEEEETTSCSCEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CEEEEEecCCCCEEEEEEcCCCCeEEEEE--CCCCCccEEEEeccCCEEEEEECCCCEEEEE
Confidence            4788887   3579999999865433221  4677889999999999999999999999875

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=97.72  E-value=0.00028  Score=46.52  Aligned_cols=58  Identities=12%  Similarity=0.168  Sum_probs=45.1

Q ss_pred             CcEEEEEeC---CcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         20 QEMLLLVQR---TDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        20 ~~~Ll~s~~---~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      .-+|+++..   ..|.++++++.....++.  .++..+.+|.+|+.+++|||+|...+.|.++
T Consensus       170 ~g~ly~td~~~~~~I~r~~~dG~~~~~~~~--~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~  230 (349)
T 3v64_C          170 EGTIYWTDWGNTPRIEASSMDGSGRRIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHVIERA  230 (349)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSCSCEESCC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cCeEEEeccCCCCEEEEEeCCCCCcEEEEE--CCCCCcceEEEeCCCCEEEEEECCCCEEEEE
Confidence            347888875   459999999865433221  4677889999999999999999999999875

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.66  E-value=0.00038  Score=50.99  Aligned_cols=57  Identities=19%  Similarity=0.293  Sum_probs=45.3

Q ss_pred             cEEEEEeC---CcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         21 EMLLLVQR---TDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        21 ~~Ll~s~~---~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      ..|+++..   ..|.++.+++.....++  ..++..+.+|.+|+.+++|||+|....+|.++
T Consensus       526 g~LYwtD~g~~~~I~~~~~dG~~~~~lv--~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~  585 (791)
T 3m0c_C          526 GFMYWTDWGTPAKIKKGGLNGVDIYSLV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSI  585 (791)
T ss_dssp             TEEEEEECSSSCEEEEEETTSCCEEEEE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCEEEecCCCCCeEEEEecCCCceEEEE--eCCCCCceEEEEecCCCeEEEEeCCCCcEEEE
Confidence            47888873   46999999987543322  25678899999999999999999999999875

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.65  E-value=0.00036  Score=46.62  Aligned_cols=58  Identities=12%  Similarity=0.168  Sum_probs=45.0

Q ss_pred             CcEEEEEeC---CcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         20 QEMLLLVQR---TDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        20 ~~~Ll~s~~---~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      ..+|+++..   ..|.++++++.....++.  .++..+.+|.+|+.+++|||+|.....|.++
T Consensus       213 ~g~ly~td~~~~~~I~r~~~dG~~~~~~~~--~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~  273 (386)
T 3v65_B          213 EGTIYWTDWGNTPRIEASSMDGSGRRIIAD--THLFWPNGLTIDYAGRRMYWVDAKHHVIERA  273 (386)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSCSCEEEEC--SSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             CCeEEEeccCCCCEEEEEeCCCCCcEEEEE--CCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence            347788874   459999999865433221  4677788999999999999999999999875

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=97.46  E-value=0.0014  Score=42.49  Aligned_cols=58  Identities=19%  Similarity=0.295  Sum_probs=43.8

Q ss_pred             CcEEEEEeC---CcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         20 QEMLLLVQR---TDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        20 ~~~Ll~s~~---~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      .-.|+++..   ..|.+++++++......  ..++..+.+|.+|+.+++|||+|...+.|.++
T Consensus       131 ~g~ly~~d~~~~~~I~~~~~dG~~~~~~~--~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~  191 (316)
T 1ijq_A          131 HGFMYWTDWGTPAKIKKGGLNGVDIYSLV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSI  191 (316)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSCCEEEEE--CSSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCEEEEEccCCCCeEEEEcCCCCCeEEEE--ECCCCCceEEEEeccCCEEEEEECCCCeEEEE
Confidence            347777774   46888999876533222  13577888999999999999999999888875

>2wph_E Coagulation factor IXA light chain; serine protease, zymogen, hydrolase, glycoprotein, hydroxylation, phosphoprotein, sulfation, hemostasis; HET: DPN 1PE; 1.50A {Homo sapiens} PDB: 2wpi_E* 2wpj_E* 2wpk_E* 2wpl_E* 2wpm_E 3kcg_L* 3lc3_B* 1rfn_B* 3lc5_B*

Probab=97.01  E-value=0.00029  Score=35.88  Aligned_cols=15  Identities=27%  Similarity=0.399  Sum_probs=14.0

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|. |+++|.
T Consensus        24 ~C~~Gy~L~~D~~tC~   39 (59)
T 2wph_E           24 SCTEGYRLAENQKSCE   39 (59)
T ss_dssp             ECCTTEEECTTSSCEE
T ss_pred             eCCCCcEECCCCCccc
Confidence            399999999 999998

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=96.98  E-value=0.011  Score=36.75  Aligned_cols=58  Identities=12%  Similarity=0.185  Sum_probs=42.9

Q ss_pred             CcEEEEEeC----CcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         20 QEMLLLVQR----TDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        20 ~~~Ll~s~~----~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      ...|.++..    ..|.++.+++.......  ..++..+.++.+|+..++|||+|...+.|.+.
T Consensus       133 ~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~--~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~  194 (267)
T 1npe_A          133 RGNLYWTDWNRDNPKIETSHMDGTNRRILA--QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (267)
T ss_dssp             TTEEEEEECCSSSCEEEEEETTSCCCEEEE--CTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCEEEEEECCCCCcEEEEEecCCCCcEEEE--ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEE
Confidence            456777773    36888888875432221  13567789999999999999999999988875

>2bz6_L Blood coagulation factor VIIA; serine protease, enzyme complex, hydrolase; HET: 346; 1.6A {Homo sapiens} SCOP: g.3.11.1 PDB: 1w8b_L* 1w7x_L* 1cvw_L*

Probab=96.98  E-value=0.00029  Score=35.07  Aligned_cols=15  Identities=27%  Similarity=0.503  Sum_probs=14.0

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|. |+++|.
T Consensus        24 ~C~~Gy~L~~Dg~tC~   39 (53)
T 2bz6_L           24 RCHEGYSLLADGVSCT   39 (53)
T ss_dssp             ECCTTEEECTTSSCEE
T ss_pred             eCCCCCEECCCCCccc
Confidence            399999999 999998

>1kig_L Factor XA; glycoprotein, serine protease, plasma, blood coagulation, complex (protease/inhibitor); 3.00A {Bos taurus} SCOP: g.3.11.1

Probab=96.91  E-value=0.00042  Score=34.18  Aligned_cols=15  Identities=27%  Similarity=0.246  Sum_probs=14.1

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|. |+++|.
T Consensus        22 ~C~~Gy~L~~d~~tC~   37 (51)
T 1kig_L           22 SCAHGYVLGDDSKSCV   37 (51)
T ss_dssp             CCCTTEEECTTSSCEE
T ss_pred             eCCCCcEECCCCCccc
Confidence            499999999 999998

>1kli_L Factor VIIA; extrinsic coagulation pathway, serine protease activation, R drug design, substrate-assisted catalysis, hydrolase; 1.69A {Homo sapiens} SCOP: g.3.11.1 PDB: 1klj_L 1jbu_L 1ygc_L*

Probab=96.70  E-value=0.00063  Score=35.68  Aligned_cols=15  Identities=27%  Similarity=0.503  Sum_probs=14.1

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|. |+++|.
T Consensus        30 ~C~~Gy~L~~D~~tC~   45 (69)
T 1kli_L           30 RCHEGYSLLADGVSCT   45 (69)
T ss_dssp             ECCTTEEECTTSSCEE
T ss_pred             eCCCCCeECCCCCccc
Confidence            499999999 999998

>2jkh_L Factor X light chain; plasma, calcium, zymogen, secreted, protease, hydrolase, polymorphism, glycoprotein, gamma-carboxyglutamic acid; HET: BI7; 1.25A {Homo sapiens} PDB: 2bok_L* 2vvc_K* 2vvu_L* 2vvv_L* 2vwl_L* 2vwm_K* 2vwn_L* 2vwo_L* 2xbv_L* 2xbw_L* 2xbx_L* 2xby_L* 2xc0_L* 2xc4_L* 2xc5_L* 2gd4_L* 3kl6_B* 2y5f_L* 2y5g_L* 2y5h_L* ...

Probab=96.67  E-value=0.00077  Score=33.62  Aligned_cols=15  Identities=20%  Similarity=0.264  Sum_probs=14.0

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|. |+++|.
T Consensus        25 ~C~~Gy~L~~d~~~C~   40 (55)
T 2jkh_L           25 SCARGYTLADNGKACI   40 (55)
T ss_dssp             ECCTTEEECTTSSCEE
T ss_pred             eCCCCCEECCCCCeec
Confidence            399999999 999998

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=96.44  E-value=0.0025  Score=45.87  Aligned_cols=57  Identities=19%  Similarity=0.293  Sum_probs=40.8

Q ss_pred             cEEEEEeC---CcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         21 EMLLLVQR---TDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        21 ~~Ll~s~~---~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      .+|+++..   ..|.++.+++.....++  ..++..+.+|.+|+.+++|||+|....+|.++
T Consensus       508 g~ly~td~~~~~~I~~~~~dG~~~~~l~--~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~  567 (699)
T 1n7d_A          508 GFMYWTDWGTPAKIKKGGLNGVDIYSLV--TENIQWPNGITLDLLSGRLYWVDSKLHSISSI  567 (699)
T ss_dssp             SCCEECCCSSSCCEEBCCSSSCCCCEES--CSSCSSCCCEEECTTTCCEEEEETTTTEEEEE
T ss_pred             CcEEEcccCCCCeEEEEeCCCCCeeEEE--eCCCCCccEEEEeccCCEEEEEecCCCeEEEE
Confidence            35666652   46888888775433222  13566778889999999999999998888875

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.64  E-value=0.023  Score=37.03  Aligned_cols=54  Identities=7%  Similarity=0.212  Sum_probs=37.3

Q ss_pred             CcEEEEEe-----CCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEeec
Q psy13631         20 QEMLLLVQ-----RTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus        20 ~~~Ll~s~-----~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      ..+|.|+.     ...|.++.++++..+.+.   .+  .+  ..+++..+.|||++.....|+++.
T Consensus       115 g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt---~~--~~--~~~~~~g~~iy~t~~g~~~Iy~~~  173 (302)
T 3s25_A          115 GNYIYYLHYDTQTATSLYRIRIDGEEKKKIK---NH--YL--FTCNTSDRYFYYNNPKNGQLYRYD  173 (302)
T ss_dssp             TTEEEEEEESSSSCEEEEEEETTSCCCEEEE---SS--CC--CCSEEETTEEEEECTTTCCEEEEE
T ss_pred             CCEEEEEeecCCCCceEEEEECCCCCeEEEe---CC--Cc--eEeeEECCEEEEEeCCCceEEEEE
Confidence            45788876     358999999987654332   12  11  345667889999998778888763

>1apq_A Complement protease C1R; EGF, calcium binding, serine protease; NMR {Homo sapiens} SCOP: g.3.11.1

Probab=95.55  E-value=0.0039  Score=30.32  Aligned_cols=15  Identities=27%  Similarity=0.350  Sum_probs=13.7

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||.|. |+++|.
T Consensus        36 ~C~~Gy~~~~d~~~C~   51 (53)
T 1apq_A           36 SCRPGYELQEDRHSCQ   51 (53)
T ss_dssp             ECSTTCEECTTSSCEE
T ss_pred             ECCCCCeECCCCCccC
Confidence            499999999 999997

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=95.24  E-value=0.039  Score=35.90  Aligned_cols=46  Identities=13%  Similarity=0.129  Sum_probs=31.3

Q ss_pred             CCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEE---CCCCcEEeec
Q psy13631         28 RTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD---DEARNKSGES   80 (81)
Q Consensus        28 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d---~~~~~I~r~s   80 (81)
                      +..|+++++++.+...+.   .+...    .+.+.+++|||++   .....|+|+.
T Consensus        87 ~~~Iy~i~~dg~~~~~l~---~~~~~----~~s~~g~~Iy~~~~~~~~~~~Iy~~~  135 (302)
T 3s25_A           87 RNSLCRIKRNGHGSTVLD---PDPCI----YASLIGNYIYYLHYDTQTATSLYRIR  135 (302)
T ss_dssp             SEEEEEEETTSCCCEEEE---CSCEE----EEEEETTEEEEEEESSSSCEEEEEEE
T ss_pred             CCeEEEEeCCCCcceEee---cCCcc----EEEEeCCEEEEEeecCCCCceEEEEE
Confidence            347999999998654322   23333    3444789999999   5677888763

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=94.13  E-value=0.53  Score=30.86  Aligned_cols=54  Identities=7%  Similarity=0.265  Sum_probs=39.5

Q ss_pred             CCCcEEEEEeCC---------------cEEEEeCCCCC------------ceeeEEEeCCccceEEEEEeCCCCEEEEEE
Q psy13631         18 GSQEMLLLVQRT---------------DICKISLDTPD------------HTNVMLPVVGVKHAIAIDWDPVEQHLYWTD   70 (81)
Q Consensus        18 ~~~~~Ll~s~~~---------------~I~~i~l~~~~------------~~~~~~~~~~~~~~~ald~d~~~~~iyW~d   70 (81)
                      ++.-.|.++.+.               .|.+++.+++-            ...+.  ..++.++.+++||+.++.||.+|
T Consensus       138 ~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~--a~G~rnp~gl~~d~~~g~l~~~d  215 (353)
T 2g8s_A          138 DGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPDDNPFIKESGVRAEIW--SYGIRNPQGMAMNPWSNALWLNE  215 (353)
T ss_dssp             CSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCTTCTTTTSTTSCTTEE--EECCSEEEEEEEETTTTEEEEEE
T ss_pred             CCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCCCCCCcCCCCCCccEE--EEcCcCccceEEECCCCCEEEEe
Confidence            355578888643               69999988641            11222  24889999999999899999999


Q ss_pred             CCC
Q psy13631         71 DEA   73 (81)
Q Consensus        71 ~~~   73 (81)
                      ...
T Consensus       216 ~g~  218 (353)
T 2g8s_A          216 HGP  218 (353)
T ss_dssp             ECS
T ss_pred             cCC
Confidence            864

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=94.02  E-value=0.48  Score=31.95  Aligned_cols=59  Identities=10%  Similarity=0.134  Sum_probs=42.8

Q ss_pred             CcEEEEEeC--CcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         20 QEMLLLVQR--TDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        20 ~~~Ll~s~~--~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      .-.|+++..  ..|++++.++.... .+..+.+...+.+|.+|+..+++||+|.....|.+.
T Consensus       237 ~g~lyv~d~~~~~V~~~~~~~~~~~-~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~  297 (430)
T 3tc9_A          237 NGELYFNSWNAGQVFRYDFTTQETT-PLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRS  297 (430)
T ss_dssp             TCCEEEEETTTTEEEEEETTTTEEE-EEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCEEEEEECCCCEEEEEECCCCcEE-EEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEE
Confidence            557777763  47889988865321 222333445678899999999999999999998874

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=93.64  E-value=0.24  Score=33.40  Aligned_cols=51  Identities=18%  Similarity=0.280  Sum_probs=36.9

Q ss_pred             cEEEEEeC-CcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCC
Q psy13631         21 EMLLLVQR-TDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEAR   74 (81)
Q Consensus        21 ~~Ll~s~~-~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~   74 (81)
                      ..|.++.. ..|+++++++..... +.  .....+.+|++|...++|||+|....
T Consensus       150 g~Lyv~d~~~~I~~id~~~~~v~~-~~--~~~~~P~~ia~d~~G~~lyvad~~~~  201 (430)
T 3tc9_A          150 NHLYLVGEQHPTRLIDFEKEYVST-VY--SGLSKVRTICWTHEADSMIITNDQNN  201 (430)
T ss_dssp             EEEEEEEBTEEEEEEETTTTEEEE-EE--CCCSCEEEEEECTTSSEEEEEECCSC
T ss_pred             CeEEEEeCCCcEEEEECCCCEEEE-Ee--cCCCCcceEEEeCCCCEEEEEeCCCC
Confidence            45666665 678888887653222 22  36678999999999999999997543

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=93.48  E-value=0.68  Score=31.30  Aligned_cols=60  Identities=12%  Similarity=0.054  Sum_probs=40.2

Q ss_pred             CcEEEEEeC--CcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         20 QEMLLLVQR--TDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        20 ~~~Ll~s~~--~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      .-.|.++..  ..|++++.+.......+...........|.+|+..++||++|.....|.+.
T Consensus       239 ~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~  300 (433)
T 4hw6_A          239 NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRV  300 (433)
T ss_dssp             TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEE
Confidence            456776764  368888887443312222222333345789999999999999999999874

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=91.75  E-value=0.78  Score=30.14  Aligned_cols=44  Identities=14%  Similarity=0.282  Sum_probs=32.5

Q ss_pred             cEEEEeCCCCC-------ceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCc
Q psy13631         30 DICKISLDTPD-------HTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARN   75 (81)
Q Consensus        30 ~I~~i~l~~~~-------~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~   75 (81)
                      .|.+++.+++-       ...+.  ..++.++.+++||+.++.||.+|...+.
T Consensus       170 ~I~ri~~dG~~p~~npf~~~~i~--a~G~rnp~Gla~d~~~g~l~v~d~g~~~  220 (354)
T 3a9g_A          170 KILRVDEEGRPPADNPFPNSPIW--SYGHRNPQGIDWHRASGVMVATEHGPVG  220 (354)
T ss_dssp             EEEEECTTSCCCTTSSSTTCCEE--EECCSCCCEEEECTTTCCEEEEECCSSS
T ss_pred             EEEEEcCCCCCCCCCCCCCCcEE--EEccCCcceEEEeCCCCCEEEEecCCCC
Confidence            68898887641       11222  2488999999999988999999987643

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=91.53  E-value=1.8  Score=28.86  Aligned_cols=57  Identities=7%  Similarity=-0.002  Sum_probs=39.0

Q ss_pred             EEEEEeC---CcEEEEeCCCCCceeeEEEe-------------CCccceEEEEEeCCCCEEEEEECCCCcEEeec
Q psy13631         22 MLLLVQR---TDICKISLDTPDHTNVMLPV-------------VGVKHAIAIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus        22 ~Ll~s~~---~~I~~i~l~~~~~~~~~~~~-------------~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      .|+++..   +.|+++++....... +.-.             ..+..+.+|.+|.. +.||.+|....+|.|.+
T Consensus       335 ~lyvad~~~~~~I~~~~~~~G~v~~-~~g~~~~~g~~~g~~~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~  407 (409)
T 3hrp_A          335 NFYIVDGFKGYCLRKLDILDGYVST-VAGQVDVASQIDGTPLEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYA  407 (409)
T ss_dssp             CEEEEETTTTCEEEEEETTTTEEEE-EEECTTCBSCCCBSTTTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEE
T ss_pred             CEEEEeCCCCCEEEEEECCCCEEEE-EeCCCCCCCcCCCChhceEeCCceEEEEcCC-CCEEEEECCCCeEEEEE
Confidence            3777766   578888864332111 1110             01567899999987 89999999999998864

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=91.41  E-value=1.6  Score=28.99  Aligned_cols=61  Identities=16%  Similarity=0.270  Sum_probs=39.6

Q ss_pred             CcEEEEEeCC-cEEEEeCCCCCceeeE-EEeCC-c-cceE-EEEEeCCCCEEEEEECCCCcEEeec
Q psy13631         20 QEMLLLVQRT-DICKISLDTPDHTNVM-LPVVG-V-KHAI-AIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus        20 ~~~Ll~s~~~-~I~~i~l~~~~~~~~~-~~~~~-~-~~~~-ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      ...|+++... .|++++++........ .+..+ . .++. ++.||+.++.+|++|.....|.+..
T Consensus       230 ~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~  295 (409)
T 3hrp_A          230 EEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKIT  295 (409)
T ss_dssp             SSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEEC
T ss_pred             CCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEe
Confidence            5567776654 5888988765422110 00111 1 1234 8999998899999999999988753

>2vh0_B Activated factor XA light chain; serine protease, EGF-like domain, blood coagulation, polymorphism, glycoprotein, hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB: 1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A* 1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B* 2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...

Probab=91.13  E-value=0.098  Score=30.13  Aligned_cols=15  Identities=20%  Similarity=0.264  Sum_probs=13.8

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||.|. ||++|.
T Consensus       105 ~C~~Gy~l~~~g~~C~  120 (134)
T 2vh0_B          105 SCARGYTLADNGKACI  120 (134)
T ss_dssp             ECCTTEEECTTSSCEE
T ss_pred             ECCCCcEECCCCCccC
Confidence            499999999 999998

>1aut_L Activated protein C; serine proteinase, plasma calcium binding, glycoprotein, HYD hydrolase inhibitor complex, blood clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 PDB: 3f6u_L*

Probab=90.73  E-value=0.12  Score=28.88  Aligned_cols=15  Identities=27%  Similarity=0.308  Sum_probs=13.8

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||.|. |+++|.
T Consensus        78 ~C~~G~~~~~~g~~C~   93 (114)
T 1aut_L           78 SCAPGYKLGDDLLQCH   93 (114)
T ss_dssp             ECCTTEEECTTSSCEE
T ss_pred             ECCCCeeECCCCCccC
Confidence            489999999 999998

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=90.62  E-value=0.72  Score=30.17  Aligned_cols=44  Identities=14%  Similarity=0.406  Sum_probs=30.9

Q ss_pred             cEEEEeCCCCC------------ceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCc
Q psy13631         30 DICKISLDTPD------------HTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARN   75 (81)
Q Consensus        30 ~I~~i~l~~~~------------~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~   75 (81)
                      .|.+++.+++-            ...+.  ..++.++.+++||+.++.||.+|...+.
T Consensus       170 ~I~ri~~dG~~p~~npf~~~~~~~~~i~--a~G~rnp~g~a~d~~~g~l~v~d~g~~~  225 (352)
T 2ism_A          170 KILRLTPEGEPAPGNPFLGRRGARPEVY--SLGHRNPQGLAWHPKTGELFSSEHGPSG  225 (352)
T ss_dssp             EEEEECTTSSBCTTCTTTTCTTSCTTEE--EECCSEECCCEECTTTCCEEEEEECC--
T ss_pred             EEEEEcCCCCCCCCCcccCCCCCCccEE--EEcCCCcccEEEECCCCCEEEEEcCCCC
Confidence            68888887620            11122  2478999999999988999999987655

>2c4f_L Coagulation factor VII precursor; blood coagulation, serine protease, EGF, EGF-like domain, GLA, receptor enzyme, glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L* 2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L* 1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L* 2flb_L* ...

Probab=90.61  E-value=0.12  Score=30.06  Aligned_cols=15  Identities=27%  Similarity=0.503  Sum_probs=13.9

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||.|. ||++|.
T Consensus       113 ~C~~Gy~l~~dG~~C~  128 (142)
T 2c4f_L          113 RCHEGYSLLADGVSCT  128 (142)
T ss_dssp             ECCTTEEECTTSSCEE
T ss_pred             ECCCCceECCCCCCCC
Confidence            499999999 999998

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=90.47  E-value=1.8  Score=26.01  Aligned_cols=55  Identities=16%  Similarity=0.306  Sum_probs=38.8

Q ss_pred             EEEEEe--CCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         22 MLLLVQ--RTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        22 ~Ll~s~--~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      .|+++.  ...|..++.++....  ..+..++..+.++.+|... .+|+++...++|...
T Consensus       204 ~l~v~~~~~~~v~~~~~~~~~~~--~~~~~~~~~p~~i~~~~~g-~l~v~~~~~~~v~~~  260 (270)
T 1rwi_B          204 TVYVTEHNTNQVVKLLAGSTTST--VLPFTGLNTPLAVAVDSDR-TVYVADRGNDRVVKL  260 (270)
T ss_dssp             CEEEEETTTSCEEEECTTCSCCE--ECCCCSCSCEEEEEECTTC-CEEEEEGGGTEEEEE
T ss_pred             CEEEEECCCCcEEEEcCCCCcce--eeccCCCCCceeEEECCCC-CEEEEECCCCEEEEE
Confidence            666676  457888888764322  2333456778899999865 599999988888764

>1x7a_L Coagulation factor IX, light chain; inhibition, blood clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP: g.3.11.1 g.3.11.1 PDB: 1pfx_L*

Probab=90.09  E-value=0.14  Score=29.96  Aligned_cols=15  Identities=33%  Similarity=0.463  Sum_probs=13.9

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||.|. ||++|.
T Consensus       110 ~C~~Gy~l~~dG~~C~  125 (146)
T 1x7a_L          110 SCTTGYRLAPDQKSCK  125 (146)
T ss_dssp             BCCTTEEECTTSSSEE
T ss_pred             EcCCCcEeCCCCCcCC
Confidence            499999999 999998

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=89.94  E-value=1.2  Score=29.58  Aligned_cols=46  Identities=15%  Similarity=0.269  Sum_probs=32.4

Q ss_pred             CCcEEEEeCCCCCc-----eeeEEEeCCccceEEEEEeCCCCEEEEEECCCC
Q psy13631         28 RTDICKISLDTPDH-----TNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEAR   74 (81)
Q Consensus        28 ~~~I~~i~l~~~~~-----~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~   74 (81)
                      ...|.+++.+++--     ....+-..++.|+.+++||+ ++.||.+|...+
T Consensus       173 ~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp-~G~L~~~d~g~~  223 (347)
T 3das_A          173 GGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDD-KQRLFASEFGQD  223 (347)
T ss_dssp             TTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECT-TCCEEEEECCSS
T ss_pred             CCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcceEEECC-CCCEEEEecCCC
Confidence            35899999886510     00112235899999999999 689999998653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=89.80  E-value=2  Score=29.99  Aligned_cols=60  Identities=8%  Similarity=0.078  Sum_probs=42.4

Q ss_pred             CcEEEEEeCC--cEEEEeCC-------CCCc-----------eeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         20 QEMLLLVQRT--DICKISLD-------TPDH-----------TNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        20 ~~~Ll~s~~~--~I~~i~l~-------~~~~-----------~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      ..+|+++...  .|.+++++       ....           ...+..++.-.....|.+|+..+.+|.+|.....|.|.
T Consensus       258 ~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~ki  337 (496)
T 3kya_A          258 NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRS  337 (496)
T ss_dssp             TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEE
Confidence            5678888754  58889887       3322           01223333434568899999999999999999999884

>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A {Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*

Probab=89.36  E-value=0.16  Score=31.38  Aligned_cols=15  Identities=20%  Similarity=0.264  Sum_probs=14.0

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||.|. ||++|.
T Consensus       105 ~C~~Gy~l~~dG~~C~  120 (195)
T 1nfu_B          105 SCARGYTLADNGKACI  120 (195)
T ss_dssp             ECCTTEEECTTSSCEE
T ss_pred             ECCCCceeCCCCCccc
Confidence            499999999 999998

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=87.62  E-value=1.8  Score=29.22  Aligned_cols=48  Identities=8%  Similarity=0.125  Sum_probs=35.2

Q ss_pred             cEEEEEeC-CcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECC
Q psy13631         21 EMLLLVQR-TDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDE   72 (81)
Q Consensus        21 ~~Ll~s~~-~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~   72 (81)
                      -.|+++.. +.|+++++....... +  +..+..+.+|.+|...+ ||++|..
T Consensus       153 g~Lyv~D~~~~I~~id~~~g~v~~-~--~~~~~~P~giavd~dG~-lyVad~~  201 (433)
T 4hw6_A          153 DDLYWVGQRDAFRHVDFVNQYVDI-K--TTNIGQCADVNFTLNGD-MVVVDDQ  201 (433)
T ss_dssp             CEEEEECBTSCEEEEETTTTEEEE-E--CCCCSCEEEEEECTTCC-EEEEECC
T ss_pred             CEEEEEeCCCCEEEEECCCCEEEE-e--ecCCCCccEEEECCCCC-EEEEcCC
Confidence            56777776 789999986543222 2  23667799999999888 9999974

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=87.50  E-value=3.9  Score=25.87  Aligned_cols=57  Identities=7%  Similarity=0.080  Sum_probs=37.0

Q ss_pred             EEEEeC--CcEEEEeCCCCCceeeEEE--------eCCccceEEEEEeCCCCEEEEEEC-CCCcEEee
Q psy13631         23 LLLVQR--TDICKISLDTPDHTNVMLP--------VVGVKHAIAIDWDPVEQHLYWTDD-EARNKSGE   79 (81)
Q Consensus        23 Ll~s~~--~~I~~i~l~~~~~~~~~~~--------~~~~~~~~ald~d~~~~~iyW~d~-~~~~I~r~   79 (81)
                      |+++..  ..|+.++.++.......+.        -..+..+.+|.+|+.++.+|++|. ....|.+.
T Consensus       104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~  171 (329)
T 3fvz_A          104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQF  171 (329)
T ss_dssp             EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEE
T ss_pred             EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEE
Confidence            555653  4788888776521111110        123446889999998889999996 67777764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=87.13  E-value=0.91  Score=28.42  Aligned_cols=30  Identities=17%  Similarity=0.254  Sum_probs=24.3

Q ss_pred             CccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         50 GVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        50 ~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      +..-.-+..||+.++.+||+|...+.|++.
T Consensus        11 ~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~   40 (297)
T 3g4e_A           11 NCRCGESPVWEEVSNSLLFVDIPAKKVCRW   40 (297)
T ss_dssp             CCSBEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCccccCCeEECCCCEEEEEECCCCEEEEE
Confidence            344456778999999999999999988874

>3ssb_I IMPI alpha, inducible metalloproteinase inhibitor protein; thermolysin fold - family I8 fold, metalloprotease thermoLys inhibitor; 1.80A {Galleria mellonella}

Probab=87.07  E-value=0.23  Score=21.96  Aligned_cols=15  Identities=20%  Similarity=0.078  Sum_probs=11.5

Q ss_pred             CCCCceEEcCCCCCC
Q psy13631          2 FHFYGVRLVDNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~d~~tC~   16 (81)
                      ||++||..++...|.
T Consensus         8 ~C~~G~vrn~~G~CV   22 (32)
T 3ssb_I            8 YCEDGYARDVNGKCI   22 (32)
T ss_dssp             EECTTEEECTTSCEE
T ss_pred             CcCCCcEECCCCCEE
Confidence            799999888444576

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=85.74  E-value=4.9  Score=25.36  Aligned_cols=60  Identities=12%  Similarity=-0.035  Sum_probs=38.1

Q ss_pred             CcEEEEEeC---CcEEEEeCCCCCceeeEEEe-------CCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         20 QEMLLLVQR---TDICKISLDTPDHTNVMLPV-------VGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        20 ~~~Ll~s~~---~~I~~i~l~~~~~~~~~~~~-------~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      .-.|+++..   ..|+.++.++........+-       ..+..+.+|.+|+..+.||++|....+|.+.
T Consensus       154 ~g~lyv~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~  223 (329)
T 3fvz_A          154 TGAVFVSDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCF  223 (329)
T ss_dssp             TCCEEEEECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CCeEEEEeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEE
Confidence            456666763   46777775543211111110       1234488999999889999999988888763

>1z6c_A Vitamin K-dependent protein S; EGF module, blood clotting; NMR {Homo sapiens}

Probab=84.57  E-value=0.3  Score=25.89  Aligned_cols=15  Identities=20%  Similarity=0.166  Sum_probs=13.5

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||.|. ++++|.
T Consensus        28 ~C~~G~~~~~~g~~C~   43 (87)
T 1z6c_A           28 ECPEGYRYNLKSKSCE   43 (87)
T ss_dssp             SSSTTCEEETTTTEEE
T ss_pred             ECCCCceECCCCCcCC
Confidence            499999999 999997

>3f1s_B Vitamin K-dependent protein Z; PZ, ZPI, complex, serpin, protease inhibitor, protease, GLYC secreted, serine protease inhibitor, blood coagulation; HET: FLC NAG; 2.30A {Homo sapiens}

Probab=83.68  E-value=0.43  Score=30.37  Aligned_cols=15  Identities=33%  Similarity=0.379  Sum_probs=13.7

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|. |+++|.
T Consensus        27 ~C~~G~~l~~d~~sC~   42 (283)
T 3f1s_B           27 SCAQGYRLGEDHKQCV   42 (283)
T ss_dssp             BCCTTEEECTTSSCEE
T ss_pred             cCCCCcccCCCCCccc
Confidence            389999999 999998

>1uzk_A Fibrillin-1; glycoprotein, extra-cellular matrix, calcium, TB domain, disease mutation, extracellular matrix, polymorphism, cbegf domain; 1.35A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1 g.23.1.1 PDB: 1uzj_A 1uzp_A 1uzq_A

Probab=83.31  E-value=0.4  Score=28.10  Aligned_cols=15  Identities=13%  Similarity=0.016  Sum_probs=13.9

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|. |+++|.
T Consensus        27 ~C~~Gy~~~~~g~~C~   42 (162)
T 1uzk_A           27 DCPPDFELNPTRVGCV   42 (162)
T ss_dssp             ECCTTCEECTTSSBEE
T ss_pred             eCCCCCeECCCCCccc
Confidence            399999999 999998

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=81.93  E-value=6.2  Score=23.57  Aligned_cols=55  Identities=13%  Similarity=0.273  Sum_probs=37.3

Q ss_pred             EEEEEeC--CcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         22 MLLLVQR--TDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        22 ~Ll~s~~--~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      -|+++..  ..|..++.++....  .....++..+.+|.+|... .+|+++...+.|.+.
T Consensus       162 ~l~v~~~~~~~i~~~~~~~~~~~--~~~~~~~~~p~~i~~d~~g-~l~v~~~~~~~v~~~  218 (270)
T 1rwi_B          162 NVYVTDTDNNRVVKLEAESNNQV--VLPFTDITAPWGIAVDEAG-TVYVTEHNTNQVVKL  218 (270)
T ss_dssp             CEEEEEGGGTEEEEECTTTCCEE--ECCCSSCCSEEEEEECTTC-CEEEEETTTSCEEEE
T ss_pred             CEEEEECCCCEEEEEecCCCceE--eecccCCCCceEEEECCCC-CEEEEECCCCcEEEE
Confidence            3556654  47888887765322  2222355778899999865 899999888777764

>1eja_B Bdellastasin; complex (hydrolase/inhibitor), hydrolase, inhibitor, antistasin, trypsin; 2.70A {Hirudo medicinalis} SCOP: g.3.15.1 PDB: 1c9t_G 1c9p_B

Probab=81.05  E-value=0.71  Score=23.12  Aligned_cols=16  Identities=13%  Similarity=0.177  Sum_probs=12.6

Q ss_pred             CCCCCceEEc-CCC--CCC
Q psy13631          1 MFHFYGVRLV-DNF--TCA   16 (81)
Q Consensus         1 ~~~~~Gy~L~-d~~--tC~   16 (81)
                      ++||.||+.+ +|=  +|+
T Consensus        35 i~CP~Gfk~DENGCe~~C~   53 (59)
T 1eja_B           35 VKCEHGFKKDDNGCEYACI   53 (59)
T ss_dssp             CCCTTCBCCCSSCSCCTTC
T ss_pred             EeCCCcccccCCCCcceee
Confidence            5899999999 773  365

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=80.73  E-value=7  Score=24.78  Aligned_cols=57  Identities=12%  Similarity=0.215  Sum_probs=38.0

Q ss_pred             CcEEEEEeCCcEEEEeCCCCCcee-eEEEeCCccceEEEEEeCCCCEEEEEE----CCCCcEEe
Q psy13631         20 QEMLLLVQRTDICKISLDTPDHTN-VMLPVVGVKHAIAIDWDPVEQHLYWTD----DEARNKSG   78 (81)
Q Consensus        20 ~~~Ll~s~~~~I~~i~l~~~~~~~-~~~~~~~~~~~~ald~d~~~~~iyW~d----~~~~~I~r   78 (81)
                      ..+|.++++ .|..+++.+..... ..++ .+...+.++.+|+.+++||-++    ...+.|.+
T Consensus       236 ~~~lyv~~~-~v~~~d~~t~~~~~~~~~~-~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v  297 (328)
T 3dsm_A          236 RDTLYWINN-DIWRMPVEADRVPVRPFLE-FRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYR  297 (328)
T ss_dssp             SCEEEEESS-SEEEEETTCSSCCSSCSBC-CCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEE
T ss_pred             CCEEEEEcc-EEEEEECCCCceeeeeeec-CCCCceEEEEEcCCCCeEEEEcccccccCCEEEE
Confidence            456666666 88888887543211 1121 1136788999999899999999    66666654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=80.65  E-value=3.5  Score=25.34  Aligned_cols=31  Identities=10%  Similarity=0.072  Sum_probs=25.5

Q ss_pred             CCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         49 VGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        49 ~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      .+...+-++.||+..+.+||++...+.|.+.
T Consensus        25 ~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~   55 (296)
T 3e5z_A           25 DGFTWTEGPVYVPARSAVIFSDVRQNRTWAW   55 (296)
T ss_dssp             CCCSSEEEEEEEGGGTEEEEEEGGGTEEEEE
T ss_pred             cCCccccCCeEeCCCCEEEEEeCCCCEEEEE
Confidence            3566778899999998999999988888764

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=80.64  E-value=8  Score=23.99  Aligned_cols=30  Identities=17%  Similarity=0.307  Sum_probs=24.3

Q ss_pred             CccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         50 GVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        50 ~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      ++..+-++.|++..+.+||+|...+.|.+.
T Consensus       147 ~~~~pngi~~spdg~~lyv~~~~~~~i~~~  176 (297)
T 3g4e_A          147 QVDISNGLDWSLDHKIFYYIDSLSYSVDAF  176 (297)
T ss_dssp             EESBEEEEEECTTSCEEEEEEGGGTEEEEE
T ss_pred             ccccccceEEcCCCCEEEEecCCCCcEEEE
Confidence            455677899999999999999888877753

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	81
d1ijqa1	266	b.68.5.1 (A:377-642) Low density lipoprotein (LDL)	1e-10
d1npea_	263	b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId	4e-10

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.0 bits (126), Expect = 1e-10
 Identities = 11/48 (22%), Positives = 26/48 (54%), Gaps = 3/48 (6%)

Query: 23 LLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTD 70
          L    R ++ K++LD  ++T     +  +++ +A+D +     +YW+D
Sbjct: 4  LFFTNRHEVRKMTLDRSEYT---SLIPNLRNVVALDTEVASNRIYWSD 48

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} Length = 263

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.4 bits (122), Expect = 4e-10
 Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)

Query: 23 LLLVQRTDICKISLDTPDHTNV---MLPVVGVKHAIAIDWDPVEQHLYWTDDEARN 75
          LL  Q   I ++ L+              +  K  I + +D V++ +YWTD    +
Sbjct: 4  LLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPS 59

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	81
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.46
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.18
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.22
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.07
d1nzia2	42	Complement C1S component {Human (Homo sapiens) [Ta	97.52
d1autl2	50	Activated protein c (autoprothrombin IIa) {Human (	97.49
d1i0ua2	41	Low density lipoprotein (LDL) receptor, different	97.45
d1nt0a3	45	Mannose-binding protein associated serine protease	97.43
d2p3ua1	51	Factor X, N-terminal module {Human (Homo sapiens)	97.34
d1kigl_	51	Factor X, N-terminal module {Cow (Bos taurus) [Tax	97.33
d1ijqa2	50	Low density lipoprotein (LDL) receptor, different	97.26
d1szba2	45	Mannose-binding protein associated serine protease	97.22
d1rfnb_	57	Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606	97.07
d3bpse1	40	Low density lipoprotein (LDL) receptor, different	97.06
d1apqa_	53	Complement protease C1R {Human (Homo sapiens) [Tax	97.05
d2bz6l1	53	Coagulation factor VIIa {Human (Homo sapiens) [Tax	97.05
d1uzka1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.54
d1uzka2	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.21
d1dx5i2	35	Thrombomodulin, different EGF-like domains {Human	96.2
d1lmja2	42	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	96.04
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	95.18
d1lmja1	44	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	95.13
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	93.81
d1dx5i3	40	Thrombomodulin, different EGF-like domains {Human	92.68
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	92.22
d1emoa1	43	Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}	92.18
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	91.1
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	89.25
d1d0gr1	41	Death receptor-5 (dr5) fragment {Human (Homo sapie	87.77
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	85.26
d1ccva_	56	Chymotrypsin inhibitor AMCI {Honeybee (Apis mellif	85.11
d1hx2a_	60	BSTI {Fire-bellied toad (Bombina bombina) [TaxId:	84.46

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.1e-13  Score=86.48  Aligned_cols=57  Identities=21%  Similarity=0.503  Sum_probs=50.7

Q ss_pred             cEEEEEeCCcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEeec
Q psy13631         21 EMLLLVQRTDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus        21 ~~Ll~s~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      |||||+++++|+++++++++...+   +++++++++||||+.+++|||+|...+.|.|+.
T Consensus         2 ~fLl~s~~~~I~~~~l~~~~~~~~---~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~   58 (266)
T d1ijqa1           2 AYLFFTNRHEVRKMTLDRSEYTSL---IPNLRNVVALDTEVASNRIYWSDLSQRMICSTQ   58 (266)
T ss_dssp             CEEEEECBSSEEEEETTSCCCEEE---ECSCSSEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CEEEEECCCeEEEEECCCCcceee---eCCCCceEEEEEEeCCCEEEEEECCCCEEEEEE
Confidence            799999999999999998766544   358999999999999999999999999998863

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.18  E-value=3.3e-11  Score=76.16  Aligned_cols=60  Identities=23%  Similarity=0.361  Sum_probs=48.0

Q ss_pred             cEEEEEeCCcEEEEeCCCCCcee---eEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEeec
Q psy13631         21 EMLLLVQRTDICKISLDTPDHTN---VMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus        21 ~~Ll~s~~~~I~~i~l~~~~~~~---~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      .||||++++.|++++|++.....   ......+.+.+++||||+.+++|||+|...++|+|++
T Consensus         2 ~fLl~s~~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~   64 (263)
T d1npea_           2 THLLFAQTGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRAS   64 (263)
T ss_dssp             EEEEEEEEEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CEEEEeCCCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEE
Confidence            59999999999999998765331   1111224467899999999999999999999999864

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.22  E-value=7.5e-06  Score=50.98  Aligned_cols=57  Identities=12%  Similarity=0.182  Sum_probs=45.0

Q ss_pred             cEEEEEeCC----cEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         21 EMLLLVQRT----DICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        21 ~~Ll~s~~~----~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      -+|+++...    .|.++++++.....++  ..++..+.+|++|..+++|||+|...++|.++
T Consensus       134 g~ly~t~~~~~~~~I~r~~~dG~~~~~i~--~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~  194 (263)
T d1npea_         134 GNLYWTDWNRDNPKIETSHMDGTNRRILA--QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECL  194 (263)
T ss_dssp             TEEEEEECCSSSCEEEEEETTSCCCEEEE--CTTCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CcEEEeecCCCCcEEEEecCCCCCceeee--eecccccceEEEeecCcEEEEEeCCCCEEEEE
Confidence            466667643    3999999987654433  25788899999999999999999999999875

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=2.1e-05  Score=48.86  Aligned_cols=58  Identities=19%  Similarity=0.278  Sum_probs=45.8

Q ss_pred             CcEEEEEeCC---cEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         20 QEMLLLVQRT---DICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        20 ~~~Ll~s~~~---~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      .-+|.+++..   .|.+.+++++.....+.  .++..+.+|.+|+.+++|||+|....+|.++
T Consensus       131 ~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~--~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~  191 (266)
T d1ijqa1         131 HGFMYWTDWGTPAKIKKGGLNGVDIYSLVT--ENIQWPNGITLDLLSGRLYWVDSKLHSISSI  191 (266)
T ss_dssp             TTEEEEEECSSSCEEEEEETTSCCEEEEEC--SSCSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             cCeEEEeccCCCcceeEeccCCCceecccc--cccceeeEEEeeccccEEEEecCCcCEEEEE
Confidence            3477777643   59999999876443322  5778899999999999999999999999876

>d1nzia2 g.3.11.1 (A:118-159) Complement C1S component {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement C1S component
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=1.1e-05  Score=37.53  Aligned_cols=15  Identities=20%  Similarity=-0.051  Sum_probs=14.0

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .||+||+|. |+++|+
T Consensus        25 ~C~~Gy~L~~d~~tC~   40 (42)
T d1nzia2          25 SCPPEYFLHDDMKNCG   40 (42)
T ss_dssp             ECCTTCEECTTSSCEE
T ss_pred             eCCCCCEECCCCCeec
Confidence            399999999 999998

>d1autl2 g.3.11.1 (L:97-146) Activated protein c (autoprothrombin IIa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Activated protein c (autoprothrombin IIa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.49  E-value=2.1e-05  Score=37.86  Aligned_cols=15  Identities=27%  Similarity=0.308  Sum_probs=14.1

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|+ |+++|.
T Consensus        23 ~C~~Gy~L~~D~~tC~   38 (50)
T d1autl2          23 SCAPGYKLGDDLLQCH   38 (50)
T ss_dssp             ECCTTEEECTTSSCEE
T ss_pred             ECCCCCEECCCCCccc
Confidence            399999999 999998

>d1i0ua2 g.3.11.1 (A:42-82) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=1.9e-05  Score=36.49  Aligned_cols=15  Identities=20%  Similarity=0.182  Sum_probs=13.9

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .||+||+|. |+++|+
T Consensus        24 ~C~~Gy~L~~d~~~C~   39 (41)
T d1i0ua2          24 QCEEGFQLDPHTKACK   39 (41)
T ss_dssp             CCCTTEEECTTTCCEE
T ss_pred             ECCCCCeECCCCCccc
Confidence            499999999 999997

>d1nt0a3 g.3.11.1 (A:120-164) Mannose-binding protein associated serine protease 2, MASP2 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.43  E-value=2e-05  Score=37.09  Aligned_cols=15  Identities=27%  Similarity=0.328  Sum_probs=13.8

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|. |+++|.
T Consensus        28 ~C~~Gy~L~~d~~tC~   43 (45)
T d1nt0a3          28 SCRVGYILHQNKHTCS   43 (45)
T ss_dssp             ECCTTEEECTTSSCEE
T ss_pred             eCCCCCEECCCCCccc
Confidence            399999999 999996

>d2p3ua1 g.3.11.1 (A:87-137) Factor X, N-terminal module {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.34  E-value=4e-05  Score=36.99  Aligned_cols=15  Identities=20%  Similarity=0.264  Sum_probs=14.2

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|+ |+++|.
T Consensus        24 ~C~~Gy~L~~D~~tC~   39 (51)
T d2p3ua1          24 SCARGYTLADNGKACI   39 (51)
T ss_dssp             ECCTTEEECTTSSCEE
T ss_pred             EcCCCCEECCCCCccc
Confidence            499999999 999999

>d1kigl_ g.3.11.1 (L:) Factor X, N-terminal module {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor X, N-terminal module
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.33  E-value=4.3e-05  Score=36.84  Aligned_cols=15  Identities=27%  Similarity=0.246  Sum_probs=14.2

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|+ |+++|.
T Consensus        22 ~C~~Gy~L~~D~~tC~   37 (51)
T d1kigl_          22 SCAHGYVLGDDSKSCV   37 (51)
T ss_dssp             CCCTTEEECTTSSCEE
T ss_pred             EcCCCCEECCCCCccc
Confidence            499999999 999998

>d1ijqa2 g.3.11.1 (A:643-692) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=4e-05  Score=36.85  Aligned_cols=15  Identities=27%  Similarity=0.246  Sum_probs=13.8

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .||+||+|. |+++|.
T Consensus        34 ~C~~G~~L~~D~~tCi   49 (50)
T d1ijqa2          34 ACPDGMLLARDMRSCL   49 (50)
T ss_dssp             ECCTTCEECTTSSCEE
T ss_pred             eCCCCCEECCCCCccc
Confidence            499999999 999995

>d1szba2 g.3.11.1 (A:124-168) Mannose-binding protein associated serine protease 2, MASP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Mannose-binding protein associated serine protease 2, MASP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=4.7e-05  Score=35.74  Aligned_cols=15  Identities=27%  Similarity=0.244  Sum_probs=13.9

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|. |+++|.
T Consensus        28 ~C~~Gy~l~~d~~tC~   43 (45)
T d1szba2          28 SCRAGYVLHRNKRTCS   43 (45)
T ss_dssp             ECCTTEEECTTSSCEE
T ss_pred             ECCCCCeECCCCCCcc
Confidence            399999999 999997

>d1rfnb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Factor IX (IXa)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.07  E-value=0.00012  Score=36.07  Aligned_cols=15  Identities=27%  Similarity=0.399  Sum_probs=14.1

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|+ |+++|.
T Consensus        25 ~C~~Gy~L~~D~~tC~   40 (57)
T d1rfnb_          25 SCTEGYRLAENQKSCE   40 (57)
T ss_dssp             ECCTTEEECTTSSSEE
T ss_pred             ECCCCCEECCCCCccc
Confidence            499999999 999999

>d3bpse1 g.3.11.1 (E:293-332) Low density lipoprotein (LDL) receptor, different EGF domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Low density lipoprotein (LDL) receptor, different EGF domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.06  E-value=4.9e-05  Score=34.87  Aligned_cols=15  Identities=27%  Similarity=0.406  Sum_probs=13.3

Q ss_pred             CCCCceEEcCCCCCC
Q psy13631          2 FHFYGVRLVDNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~d~~tC~   16 (81)
                      .||+||+|.|+++|+
T Consensus        26 ~C~~Gy~L~d~~tC~   40 (40)
T d3bpse1          26 LCPDGFQLVAQRRCE   40 (40)
T ss_dssp             ECCTTCCEETTTEEC
T ss_pred             ECCCCCEECCCCcCC
Confidence            499999999889996

>d1apqa_ g.3.11.1 (A:) Complement protease C1R {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Complement protease C1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=7.6e-05  Score=36.09  Aligned_cols=16  Identities=25%  Similarity=0.322  Sum_probs=14.4

Q ss_pred             CCCCceEEc-CCCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCAN   17 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~~   17 (81)
                      .|++||+|. |+++|+.
T Consensus        36 ~C~~Gy~l~~d~~tC~~   52 (53)
T d1apqa_          36 SCRPGYELQEDRHSCQA   52 (53)
T ss_dssp             ECSTTCEECTTSSCEEC
T ss_pred             ECCCCCeECCCCCceec
Confidence            499999999 9999973

>d2bz6l1 g.3.11.1 (L:90-142) Coagulation factor VIIa {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Coagulation factor VIIa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.05  E-value=0.00013  Score=35.43  Aligned_cols=15  Identities=27%  Similarity=0.503  Sum_probs=14.1

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|+ |+++|.
T Consensus        24 ~C~~Gy~L~~D~~tC~   39 (53)
T d2bz6l1          24 RCHEGYSLLADGVSCT   39 (53)
T ss_dssp             ECCTTEEECTTSSCEE
T ss_pred             ECCCCCEECCCCCccc
Confidence            499999999 999998

>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.00036  Score=32.20  Aligned_cols=15  Identities=13%  Similarity=0.016  Sum_probs=13.6

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|. |+++|.
T Consensus        27 ~C~~Gy~l~~d~~~C~   42 (43)
T d1uzka1          27 DCPPDFELNPTRVGCV   42 (43)
T ss_dssp             ECCTTCEECTTSSBEE
T ss_pred             ecCCCCEECCCCCccc
Confidence            399999999 999995

>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.21  E-value=0.0005  Score=31.73  Aligned_cols=15  Identities=27%  Similarity=0.191  Sum_probs=13.4

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|. |+++|.
T Consensus        28 ~C~~Gy~l~~~~~~Ce   43 (43)
T d1uzka2          28 RCPTGYYLNEDTRVCD   43 (43)
T ss_dssp             ECCTTCCBCTTTCBBC
T ss_pred             ECCCCCeECcCCCccC
Confidence            499999999 999994

>d1dx5i2 g.3.11.1 (I:388-422) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.20  E-value=0.00075  Score=29.30  Aligned_cols=14  Identities=36%  Similarity=0.370  Sum_probs=11.7

Q ss_pred             CCCCceEEcCCCCC
Q psy13631          2 FHFYGVRLVDNFTC   15 (81)
Q Consensus         2 ~~~~Gy~L~d~~tC   15 (81)
                      .||+||.|++|..|
T Consensus        21 ~CPeGyIldeg~~c   34 (35)
T d1dx5i2          21 ECPEGYILDDGFIC   34 (35)
T ss_dssp             ECCTTEEEETTTEE
T ss_pred             cCCCceEecccccc
Confidence            49999999977666

>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0007  Score=31.06  Aligned_cols=15  Identities=20%  Similarity=0.111  Sum_probs=13.4

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .|++||+|. |+++|.
T Consensus        27 ~C~~Gy~l~~d~~~Cv   42 (42)
T d1lmja2          27 ECPPGHQLSPNISACI   42 (42)
T ss_dssp             ESCTTSCCCSSSCCCC
T ss_pred             eCCCCCeECcCCCccC
Confidence            399999999 999994

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.18  E-value=0.044  Score=32.64  Aligned_cols=56  Identities=14%  Similarity=0.306  Sum_probs=39.7

Q ss_pred             EEEEEeCC--cEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEeec
Q psy13631         22 MLLLVQRT--DICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus        22 ~Ll~s~~~--~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      .|+++...  .|.++..++...  ...+..++..+.+|.+|.. +.||++|...++|.|.+
T Consensus       194 ~l~vsd~~~~~i~~~~~~~~~~--~~~~~~~~~~P~~i~~d~~-g~l~vad~~~~rI~~i~  251 (260)
T d1rwia_         194 TVYVTEHNTNQVVKLLAGSTTS--TVLPFTGLNTPLAVAVDSD-RTVYVADRGNDRVVKLT  251 (260)
T ss_dssp             CEEEEETTTTEEEEECTTCSCC--EECCCCSCCCEEEEEECTT-CCEEEEEGGGTEEEEEC
T ss_pred             eeeeeecCCCEEEEEeCCCCeE--EEEccCCCCCeEEEEEeCC-CCEEEEECCCCEEEEEe
Confidence            46666653  577777665432  2333456788999999975 57999999999998854

>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.13  E-value=0.0044  Score=28.56  Aligned_cols=15  Identities=13%  Similarity=-0.186  Sum_probs=12.8

Q ss_pred             CCCCceEEc--CCCCCC
Q psy13631          2 FHFYGVRLV--DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~--d~~tC~   16 (81)
                      .|++||+++  ++++|.
T Consensus        28 ~C~~Gy~~~~~~g~~Cv   44 (44)
T d1lmja1          28 KCDEGYESGFMMMKNCM   44 (44)
T ss_dssp             CCCSSEEECTTTSSSEE
T ss_pred             eCCCCCccCCCCCCcCC
Confidence            499999997  889883

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.81  E-value=0.16  Score=30.03  Aligned_cols=54  Identities=15%  Similarity=0.311  Sum_probs=37.6

Q ss_pred             EEEEeC--CcEEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         23 LLLVQR--TDICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        23 Ll~s~~--~~I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      ++++..  ..|.+++.++...  ......++..+.+|.+|.. +.|||+|....+|.+.
T Consensus       153 ~~v~~~~~~~i~~~d~~~~~~--~~~~~~~~~~p~gi~~d~~-g~l~vsd~~~~~i~~~  208 (260)
T d1rwia_         153 VYVTDTDNNRVVKLEAESNNQ--VVLPFTDITAPWGIAVDEA-GTVYVTEHNTNQVVKL  208 (260)
T ss_dssp             EEEEEGGGTEEEEECTTTCCE--EECCCSSCCSEEEEEECTT-CCEEEEETTTTEEEEE
T ss_pred             Eeeecccccccccccccccee--eeeeccccCCCccceeeee-eeeeeeecCCCEEEEE
Confidence            444543  3577777776532  2333356788999999975 5799999998888775

>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like domains {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Thrombomodulin, different EGF-like domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.68  E-value=0.0065  Score=27.44  Aligned_cols=14  Identities=14%  Similarity=0.000  Sum_probs=11.6

Q ss_pred             CCCCceEEc--CCCCC
Q psy13631          2 FHFYGVRLV--DNFTC   15 (81)
Q Consensus         2 ~~~~Gy~L~--d~~tC   15 (81)
                      .|++||+|.  ++++|
T Consensus        25 ~C~~Gy~l~g~~~~~C   40 (40)
T d1dx5i3          25 ICGPDSALAGQIGTDC   40 (40)
T ss_dssp             EECSSSSCEEEESCCC
T ss_pred             ECCCCCeeCCCCCCCC
Confidence            499999996  68877

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=92.22  E-value=0.042  Score=33.70  Aligned_cols=24  Identities=17%  Similarity=0.321  Sum_probs=21.1

Q ss_pred             EEEEeCCCCEEEEEECCCCcEEee
Q psy13631         56 AIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        56 ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      +--||..++.|||+|+..++|.|.
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~   45 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHEL   45 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             CCeEECCCCEEEEEECCCCEEEEE
Confidence            345999999999999999999885

>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Knottins (small inhibitors, toxins, lectins)
superfamily: EGF/Laminin
family: EGF-type module
domain: Fibrillin-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.18  E-value=0.025  Score=25.67  Aligned_cols=14  Identities=21%  Similarity=0.280  Sum_probs=10.4

Q ss_pred             CCCCceEEcCCCCCC
Q psy13631          2 FHFYGVRLVDNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~d~~tC~   16 (81)
                      .|++||.| ++++|.
T Consensus        29 ~C~~Gy~~-~g~~C~   42 (43)
T d1emoa1          29 ECPFGYIL-AGNECV   42 (43)
T ss_dssp             CCCTTEEE-SSSCEE
T ss_pred             ECCCCccc-CCCccc
Confidence            49999998 455674

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=91.10  E-value=0.27  Score=30.04  Aligned_cols=46  Identities=20%  Similarity=0.161  Sum_probs=32.3

Q ss_pred             EEEEeCCCCCceeeEEEeCCccceEEEEEeCCCCEEEEEECCCCcEEee
Q psy13631         31 ICKISLDTPDHTNVMLPVVGVKHAIAIDWDPVEQHLYWTDDEARNKSGE   79 (81)
Q Consensus        31 I~~i~l~~~~~~~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~~~I~r~   79 (81)
                      +.+++.++.....+.   .++..+-+|.|++..+.+|++|...++|.+.
T Consensus       159 v~~~~~dg~~~~~~~---~~~~~pnGia~s~dg~~lyvad~~~~~I~~~  204 (319)
T d2dg1a1         159 VYYVSPDFRTVTPII---QNISVANGIALSTDEKVLWVTETTANRLHRI  204 (319)
T ss_dssp             EEEECTTSCCEEEEE---EEESSEEEEEECTTSSEEEEEEGGGTEEEEE
T ss_pred             eEEEecccceeEEEe---eccceeeeeeeccccceEEEecccCCceEEE
Confidence            555555554322222   3556677899999999999999998888764

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=89.25  E-value=0.22  Score=30.46  Aligned_cols=25  Identities=16%  Similarity=0.124  Sum_probs=20.4

Q ss_pred             EEEEEeCCCCEEEEEECCCCcEEeec
Q psy13631         55 IAIDWDPVEQHLYWTDDEARNKSGES   80 (81)
Q Consensus        55 ~ald~d~~~~~iyW~d~~~~~I~r~s   80 (81)
                      =++.||... .|||+|+..++|.|..
T Consensus        43 EG~~~D~~G-~Ly~~D~~~g~I~ri~   67 (319)
T d2dg1a1          43 EGLNFDRQG-QLFLLDVFEGNIFKIN   67 (319)
T ss_dssp             EEEEECTTS-CEEEEETTTCEEEEEC
T ss_pred             EeCEECCCC-CEEEEECCCCEEEEEE
Confidence            477899765 5999999999999853

>d1d0gr1 g.24.1.1 (R:21-61) Death receptor-5 (dr5) fragment {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: TNF receptor-like
superfamily: TNF receptor-like
family: TNF receptor-like
domain: Death receptor-5 (dr5) fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.77  E-value=0.12  Score=22.38  Aligned_cols=15  Identities=20%  Similarity=0.299  Sum_probs=13.3

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      .||+|-.+. |++.|.
T Consensus         7 lcppghhised~r~ci   22 (41)
T d1d0gr1           7 LCPPGHHISEDGRDCI   22 (41)
T ss_dssp             BBCTTEEECSSSSCEE
T ss_pred             cCCCCcccccccceee
Confidence            599999999 999876

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.26  E-value=1.8  Score=27.86  Aligned_cols=43  Identities=12%  Similarity=0.282  Sum_probs=30.4

Q ss_pred             cEEEEeCCCCCce--------eeEEEeCCccceEEEEEeCCCCEEEEEECCC
Q psy13631         30 DICKISLDTPDHT--------NVMLPVVGVKHAIAIDWDPVEQHLYWTDDEA   73 (81)
Q Consensus        30 ~I~~i~l~~~~~~--------~~~~~~~~~~~~~ald~d~~~~~iyW~d~~~   73 (81)
                      .|.++..++....        ..-+-..|+.|+.+++||+ ++.||.+|...
T Consensus       198 kilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p-~g~l~~~e~G~  248 (450)
T d1crua_         198 KVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTP-NGKLLQSEQGP  248 (450)
T ss_dssp             EEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECT-TSCEEEEEECS
T ss_pred             ceEEeeccccccccccccccccceEEEeccccccceeecc-cceeeeccccc
Confidence            5788887765321        0012346999999999998 78899998864

>d1ccva_ g.22.1.1 (A:) Chymotrypsin inhibitor AMCI {Honeybee (Apis mellifera) [TaxId: 7460]}

class: Small proteins
fold: Serine protease inhibitors
superfamily: Serine protease inhibitors
family: ATI-like
domain: Chymotrypsin inhibitor AMCI
species: Honeybee (Apis mellifera) [TaxId: 7460]

Probab=85.11  E-value=0.072  Score=25.31  Aligned_cols=14  Identities=14%  Similarity=0.150  Sum_probs=11.4

Q ss_pred             CCCCceEEc-CCCCCC
Q psy13631          2 FHFYGVRLV-DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~-d~~tC~   16 (81)
                      +||+||.|. +| .|.
T Consensus        37 ~C~~G~v~~~~g-~CV   51 (56)
T d1ccva_          37 QCQEGFLRNGEG-ACV   51 (56)
T ss_dssp             EECTTCEEETTT-EEE
T ss_pred             CCCCCeeEcCCC-CEE
Confidence            699999998 65 587

>d1hx2a_ g.22.1.2 (A:) BSTI {Fire-bellied toad (Bombina bombina) [TaxId: 8345]}

class: Small proteins
fold: Serine protease inhibitors
superfamily: Serine protease inhibitors
family: BSTI
domain: BSTI
species: Fire-bellied toad (Bombina bombina) [TaxId: 8345]

Probab=84.46  E-value=0.17  Score=24.29  Aligned_cols=15  Identities=27%  Similarity=0.308  Sum_probs=11.8

Q ss_pred             CCCCceEEc--CCCCCC
Q psy13631          2 FHFYGVRLV--DNFTCA   16 (81)
Q Consensus         2 ~~~~Gy~L~--d~~tC~   16 (81)
                      +||+||.|.  +..+|.
T Consensus        39 ~Cp~G~vl~~~~~~~CV   55 (60)
T d1hx2a_          39 GCISGTVLKSKDSSECV   55 (60)
T ss_dssp             EECTTCEESSTTCSSEE
T ss_pred             CCCCCEeEcCCCCCeEe
Confidence            699999997  345787