Psyllid ID: psy1365

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK
ccccccccEEEEEEEcccccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHccccccccHHHHHcccccccccccEEEEcHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccc
ccccccccccHHHHHHHccHHHHHHHHHHHHHccccHcHccccccHHHHHHHHHHHHcHHHccccHHHHccccccccccccEEEEEcccHHHHHHHHHHHHHHHHHHHcccHHccccEEccccEccccccccEEEEEccc
MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIdlnkragecseeEVDKIITImtnprqykipdwflnrqkdivdgkysQILLTSTAQLDSKLREDLERLKKIRAHrgmrhywglrvrgqhtkttgrrgrtvgvskkk
mstnidgkrkVMFALTaikgcgrrfsnivlkkadidlnkragecseeevdkiitimtnprqykipdWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKirahrgmrhywglrvrgqhtkttgrrgrtvgvskkk
MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVrgqhtkttgrrgrtvgvskkk
*********KVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRG*******************
MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVG*****
MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ******************
**TNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKT**RRGRTVG*****
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ooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query140 2.2.26 [Sep-21-2011]
Q962R1152 40S ribosomal protein S18 N/A N/A 0.978 0.901 0.878 2e-68
Q8ISP0152 40S ribosomal protein S18 N/A N/A 0.978 0.901 0.821 1e-63
P41094152 40S ribosomal protein S18 yes N/A 0.978 0.901 0.792 3e-62
Q8IT98152 40S ribosomal protein S18 N/A N/A 0.978 0.901 0.771 6e-62
Q8JGS9152 40S ribosomal protein S18 yes N/A 0.978 0.901 0.778 1e-61
Q90YQ5152 40S ribosomal protein S18 N/A N/A 0.978 0.901 0.764 7e-61
P62271152 40S ribosomal protein S18 yes N/A 0.978 0.901 0.771 7e-61
P62272152 40S ribosomal protein S18 yes N/A 0.978 0.901 0.771 7e-61
P62270152 40S ribosomal protein S18 yes N/A 0.978 0.901 0.771 7e-61
P62269152 40S ribosomal protein S18 yes N/A 0.978 0.901 0.771 7e-61
>sp|Q962R1|RS18_SPOFR 40S ribosomal protein S18 OS=Spodoptera frugiperda GN=RpS18 PE=2 SV=1 Back     alignment and function desciption
 Score =  257 bits (656), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 123/140 (87%), Positives = 135/140 (96%), Gaps = 3/140 (2%)

Query: 1   MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
           M+TNIDGKRKVMFA+TAIKG GRR+SNIVLKKADIDL+KRAGEC+EEEV+KI+TIM+NPR
Sbjct: 16  MNTNIDGKRKVMFAMTAIKGVGRRYSNIVLKKADIDLDKRAGECTEEEVEKIVTIMSNPR 75

Query: 61  QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
           QYKIPDWFLNRQKDIVDGKYSQ+   +++ LDSKLREDLERLKKIRAHRGMRHYWGLRVR
Sbjct: 76  QYKIPDWFLNRQKDIVDGKYSQL---TSSNLDSKLREDLERLKKIRAHRGMRHYWGLRVR 132

Query: 121 GQHTKTTGRRGRTVGVSKKK 140
           GQHTKTTGRRGRTVGVSKKK
Sbjct: 133 GQHTKTTGRRGRTVGVSKKK 152
Located at the top of the head of the 40S subunit, it contacts several helices of the 18S rRNA.
Spodoptera frugiperda (taxid: 7108)
>sp|Q8ISP0|RS18_BRABE 40S ribosomal protein S18 OS=Branchiostoma belcheri GN=RPS18 PE=2 SV=1 Back     alignment and function description
>sp|P41094|RS18_DROME 40S ribosomal protein S18 OS=Drosophila melanogaster GN=RpS18 PE=1 SV=1 Back     alignment and function description
>sp|Q8IT98|RS18_ARGIR 40S ribosomal protein S18 OS=Argopecten irradians GN=RPS18 PE=2 SV=1 Back     alignment and function description
>sp|Q8JGS9|RS18_DANRE 40S ribosomal protein S18 OS=Danio rerio GN=rps18 PE=2 SV=1 Back     alignment and function description
>sp|Q90YQ5|RS18_ICTPU 40S ribosomal protein S18 OS=Ictalurus punctatus GN=rps18 PE=2 SV=1 Back     alignment and function description
>sp|P62271|RS18_RAT 40S ribosomal protein S18 OS=Rattus norvegicus GN=Rps18 PE=1 SV=3 Back     alignment and function description
>sp|P62272|RS18_PIG 40S ribosomal protein S18 OS=Sus scrofa GN=RPS18 PE=2 SV=3 Back     alignment and function description
>sp|P62270|RS18_MOUSE 40S ribosomal protein S18 OS=Mus musculus GN=Rps18 PE=1 SV=3 Back     alignment and function description
>sp|P62269|RS18_HUMAN 40S ribosomal protein S18 OS=Homo sapiens GN=RPS18 PE=1 SV=3 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query140
110671476153 putative ribosomal protein S18 [Diaphori 0.985 0.901 0.985 2e-73
332373488152 unknown [Dendroctonus ponderosae] 0.978 0.901 0.885 4e-67
112984000152 ribosomal protein S18 [Bombyx mori] gi|4 0.978 0.901 0.885 9e-67
54039447152 RecName: Full=40S ribosomal protein S18 0.978 0.901 0.878 1e-66
389608227152 ribosomal protein S18 [Papilio xuthus] g 0.978 0.901 0.871 4e-66
70909571152 ribosomal protein S18e [Curculio glandiu 0.978 0.901 0.871 5e-66
242019380137 ribosomal protein S18, putative [Pedicul 0.978 1.0 0.9 5e-66
357625987137 40S ribosomal protein S18 [Danaus plexip 0.978 1.0 0.871 6e-66
50344500152 S18e ribosomal protein [Cicindela campes 0.978 0.901 0.864 6e-66
388523605152 ribosomal protein S18 [Cryptocercus punc 0.978 0.901 0.871 1e-65
>gi|110671476|gb|ABG81989.1| putative ribosomal protein S18 [Diaphorina citri] Back     alignment and taxonomy information
 Score =  280 bits (715), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 138/140 (98%), Positives = 138/140 (98%), Gaps = 2/140 (1%)

Query: 1   MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
           MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR
Sbjct: 16  MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 75

Query: 61  QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
           QYKIPDWFLNRQKDIVDGKYSQ  LTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR
Sbjct: 76  QYKIPDWFLNRQKDIVDGKYSQ--LTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 133

Query: 121 GQHTKTTGRRGRTVGVSKKK 140
           GQHTKTTGRRGRTVGVSKKK
Sbjct: 134 GQHTKTTGRRGRTVGVSKKK 153

Source: Diaphorina citri

Species: Diaphorina citri

Genus: Diaphorina

Family: Psyllidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|332373488|gb|AEE61885.1| unknown [Dendroctonus ponderosae] Back     alignment and taxonomy information
>gi|112984000|ref|NP_001037269.1| ribosomal protein S18 [Bombyx mori] gi|49532882|dbj|BAD26676.1| Ribosomal protein S18 [Plutella xylostella] gi|54609321|gb|AAV34876.1| ribosomal protein S18 [Bombyx mori] gi|342356373|gb|AEL28845.1| ribosomal protein S18 [Heliconius melpomene cythera] Back     alignment and taxonomy information
>gi|54039447|sp|Q962R1.1|RS18_SPOFR RecName: Full=40S ribosomal protein S18 gi|15213824|gb|AAK92187.1|AF400215_1 ribosomal protein S18 [Spodoptera frugiperda] gi|48958395|dbj|BAD23920.1| ribosomal protein S18 [Antheraea yamamai] gi|268306384|gb|ACY95313.1| ribosomal protein S18 [Manduca sexta] gi|315115383|gb|ADT80664.1| ribosomal protein S18 [Euphydryas aurinia] Back     alignment and taxonomy information
>gi|389608227|dbj|BAM17725.1| ribosomal protein S18 [Papilio xuthus] gi|389610859|dbj|BAM19040.1| ribosomal protein S18 [Papilio polytes] Back     alignment and taxonomy information
>gi|70909571|emb|CAJ17207.1| ribosomal protein S18e [Curculio glandium] Back     alignment and taxonomy information
>gi|242019380|ref|XP_002430139.1| ribosomal protein S18, putative [Pediculus humanus corporis] gi|212515230|gb|EEB17401.1| ribosomal protein S18, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|357625987|gb|EHJ76244.1| 40S ribosomal protein S18 [Danaus plexippus] Back     alignment and taxonomy information
>gi|50344500|emb|CAH04336.1| S18e ribosomal protein [Cicindela campestris] Back     alignment and taxonomy information
>gi|388523605|gb|AFK49801.1| ribosomal protein S18 [Cryptocercus punctulatus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query140
FB|FBgn0010411152 RpS18 "Ribosomal protein S18" 0.828 0.763 0.781 4.2e-47
ZFIN|ZDB-GENE-020419-20152 rps18 "ribosomal protein S18" 0.828 0.763 0.739 3.8e-46
UNIPROTKB|Q3T0R1152 RPS18 "40S ribosomal protein S 0.828 0.763 0.731 1.6e-45
UNIPROTKB|Q5TJE9152 RPS18 "40S ribosomal protein S 0.828 0.763 0.731 1.6e-45
UNIPROTKB|P62269152 RPS18 "40S ribosomal protein S 0.828 0.763 0.731 1.6e-45
UNIPROTKB|P62272152 RPS18 "40S ribosomal protein S 0.828 0.763 0.731 1.6e-45
UNIPROTKB|Q90YQ5152 rps18 "40S ribosomal protein S 0.828 0.763 0.722 1.6e-45
MGI|MGI:98146152 Rps18 "ribosomal protein S18" 0.828 0.763 0.731 1.6e-45
RGD|3595152 Rps18 "ribosomal protein S18" 0.828 0.763 0.731 1.6e-45
UNIPROTKB|A7KIL2152 RPS18 "Ribosomal protein S18" 0.828 0.763 0.714 3.4e-45
FB|FBgn0010411 RpS18 "Ribosomal protein S18" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 93/119 (78%), Positives = 109/119 (91%)

Query:     1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
             M+TNIDGKRKV  A+TAIKG GRR+SNIVLKKAD+DL KRAGEC+EEEVDK++TI++NP 
Sbjct:    16 MNTNIDGKRKVGIAMTAIKGVGRRYSNIVLKKADVDLTKRAGECTEEEVDKVVTIISNPL 75

Query:    61 QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRV 119
             QYK+P+WFLNRQKDI+DGKY Q  LTS+  LDSKLR+DLERLKKIR+HRG+RHYWGLRV
Sbjct:    76 QYKVPNWFLNRQKDIIDGKYWQ--LTSS-NLDSKLRDDLERLKKIRSHRGLRHYWGLRV 131
GO:0003735 "structural constituent of ribosome" evidence=ISS;IBA;NAS
GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;NAS
GO:0006412 "translation" evidence=ISS;IBA;NAS
GO:0006413 "translational initiation" evidence=NAS
GO:0005840 "ribosome" evidence=NAS
GO:0003723 "RNA binding" evidence=IEA
GO:0005811 "lipid particle" evidence=IDA
GO:0007052 "mitotic spindle organization" evidence=IMP
GO:0000022 "mitotic spindle elongation" evidence=IMP
GO:0015935 "small ribosomal subunit" evidence=IBA
GO:0042254 "ribosome biogenesis" evidence=IBA
GO:0005829 "cytosol" evidence=IBA
ZFIN|ZDB-GENE-020419-20 rps18 "ribosomal protein S18" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T0R1 RPS18 "40S ribosomal protein S18" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q5TJE9 RPS18 "40S ribosomal protein S18" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62269 RPS18 "40S ribosomal protein S18" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P62272 RPS18 "40S ribosomal protein S18" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q90YQ5 rps18 "40S ribosomal protein S18" [Ictalurus punctatus (taxid:7998)] Back     alignment and assigned GO terms
MGI|MGI:98146 Rps18 "ribosomal protein S18" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3595 Rps18 "ribosomal protein S18" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A7KIL2 RPS18 "Ribosomal protein S18" [Salmo salar (taxid:8030)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q97B96RS13_THEVONo assigned EC number0.35970.96420.7894yesN/A
Q90YQ5RS18_ICTPUNo assigned EC number0.76420.97850.9013N/AN/A
A5JST6RS18_CAPHINo assigned EC number0.77140.97850.9013N/AN/A
P49202RS18_CHLRENo assigned EC number0.66420.97850.8954N/AN/A
Q869U7RS18_DICDINo assigned EC number0.68340.97140.8831yesN/A
Q962R1RS18_SPOFRNo assigned EC number0.87850.97850.9013N/AN/A
Q3T0R1RS18_BOVINNo assigned EC number0.77140.97850.9013yesN/A
Q9V1A0RS13_PYRABNo assigned EC number0.45320.97140.9189yesN/A
O26141RS13_METTHNo assigned EC number0.42330.95710.8993yesN/A
A1RT04RS13_PYRILNo assigned EC number0.38400.95710.8758yesN/A
Q2NFZ3RS13_METSTNo assigned EC number0.39410.95710.8758yesN/A
Q8PV19RS13_METMANo assigned EC number0.44280.97140.8395yesN/A
P48151RS18_ENTHINo assigned EC number0.63300.97140.8774N/AN/A
A5UN52RS13_METS3No assigned EC number0.40.94280.8979yesN/A
P54019RS13_METJANo assigned EC number0.42750.96420.9yesN/A
Q46GC7RS13_METBFNo assigned EC number0.44280.97140.8395yesN/A
A0B9L1RS13_METTPNo assigned EC number0.43160.96420.8490yesN/A
A2BK76RS13_HYPBUNo assigned EC number0.42850.97850.9072yesN/A
Q9YB60RS13_AERPENo assigned EC number0.38120.97140.9066yesN/A
Q12ZR6RS13_METBUNo assigned EC number0.43570.97140.9189yesN/A
Q6KZP8RS13_PICTONo assigned EC number0.33810.97140.8607yesN/A
A3DMQ3RS13_STAMFNo assigned EC number0.43880.97140.9006yesN/A
A3CWH6RS13_METMJNo assigned EC number0.38840.96420.9060yesN/A
Q8U0E2RS13_PYRFUNo assigned EC number0.45320.97140.9189yesN/A
O27999RS13_ARCFUNo assigned EC number0.39130.95710.9178yesN/A
Q8JGS9RS18_DANRENo assigned EC number0.77850.97850.9013yesN/A
P62269RS18_HUMANNo assigned EC number0.77140.97850.9013yesN/A
Q6LXN1RS13_METMPNo assigned EC number0.34780.96420.9060yesN/A
Q8ISP0RS18_BRABENo assigned EC number0.82140.97850.9013N/AN/A
Q3IQT9RS13_NATPDNo assigned EC number0.37950.92140.7588yesN/A
Q2FT96RS13_METHJNo assigned EC number0.40280.96420.8940yesN/A
Q8IT98RS18_ARGIRNo assigned EC number0.77140.97850.9013N/AN/A
Q5JJF1RS13_PYRKONo assigned EC number0.46040.97140.9127yesN/A
Q18G53RS13_HALWDNo assigned EC number0.36760.94280.7630yesN/A
O74021RS13_PYRHONo assigned EC number0.46760.97140.9189yesN/A
P34788RS18_ARATHNo assigned EC number0.72850.97850.9013yesN/A
Q5TJE9RS18_CANFANo assigned EC number0.77140.97850.9013yesN/A
O94754RS18_SCHPONo assigned EC number0.70.97850.9013yesN/A
Q8SRP2RS18_ENCCUNo assigned EC number0.46040.97140.8888yesN/A
P0CX55RS18A_YEASTNo assigned EC number0.66150.90710.8698yesN/A
P0CX56RS18B_YEASTNo assigned EC number0.66150.90710.8698yesN/A
Q9HJD6RS13_THEACNo assigned EC number0.33810.96420.7894yesN/A
Q0W1V6RS13_UNCMANo assigned EC number0.41720.96420.6026yesN/A
Q8TRR2RS13_METACNo assigned EC number0.45710.97140.8395yesN/A
P62271RS18_RATNo assigned EC number0.77140.97850.9013yesN/A
P62270RS18_MOUSENo assigned EC number0.77140.97850.9013yesN/A
P41094RS18_DROMENo assigned EC number0.79280.97850.9013yesN/A
P62272RS18_PIGNo assigned EC number0.77140.97850.9013yesN/A
A2SSW0RS13_METLZNo assigned EC number0.35710.97140.9066yesN/A
Q8TVC1RS13_METKANo assigned EC number0.43570.96420.8940yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query140
PTZ00134154 PTZ00134, PTZ00134, 40S ribosomal protein S18; Pro 5e-81
PRK04053149 PRK04053, rps13p, 30S ribosomal protein S13P; Revi 4e-51
TIGR03629144 TIGR03629, arch_S13P, archaeal ribosomal protein S 3e-45
COG0099121 COG0099, RpsM, Ribosomal protein S13 [Translation, 6e-37
pfam00416106 pfam00416, Ribosomal_S13, Ribosomal protein S13/S1 5e-36
TIGR03631113 TIGR03631, bact_S13, 30S ribosomal protein S13 9e-14
PRK05179122 PRK05179, rpsM, 30S ribosomal protein S13; Validat 4e-13
CHL00137122 CHL00137, rps13, ribosomal protein S13; Validated 1e-07
>gnl|CDD|185469 PTZ00134, PTZ00134, 40S ribosomal protein S18; Provisional Back     alignment and domain information 
 Score =  234 bits (600), Expect = 5e-81
 Identities = 98/140 (70%), Positives = 118/140 (84%), Gaps = 3/140 (2%)

Query: 1   MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
           ++TN+DGKRKV +ALTAIKG GRRF+ +V KKA ID+ KRAGE + EE++KI+ I+ NP 
Sbjct: 18  LNTNVDGKRKVPYALTAIKGIGRRFAYLVCKKAGIDVTKRAGELTAEEIEKIVEIIANPL 77

Query: 61  QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
           Q+KIPDWFLNRQ+D  DGK S +    +  LD+KLREDLERLKKIR HRG+RH+WGLRVR
Sbjct: 78  QFKIPDWFLNRQRDPKDGKNSHLT---SNMLDTKLREDLERLKKIRLHRGLRHHWGLRVR 134

Query: 121 GQHTKTTGRRGRTVGVSKKK 140
           GQHTKTTGRRGRTVGVS+KK
Sbjct: 135 GQHTKTTGRRGRTVGVSRKK 154

Length = 154
>gnl|CDD|235215 PRK04053, rps13p, 30S ribosomal protein S13P; Reviewed Back     alignment and domain information
>gnl|CDD|213839 TIGR03629, arch_S13P, archaeal ribosomal protein S13P Back     alignment and domain information
>gnl|CDD|223177 COG0099, RpsM, Ribosomal protein S13 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|144128 pfam00416, Ribosomal_S13, Ribosomal protein S13/S18 Back     alignment and domain information
>gnl|CDD|213840 TIGR03631, bact_S13, 30S ribosomal protein S13 Back     alignment and domain information
>gnl|CDD|235358 PRK05179, rpsM, 30S ribosomal protein S13; Validated Back     alignment and domain information
>gnl|CDD|177059 CHL00137, rps13, ribosomal protein S13; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 140
PTZ00134154 40S ribosomal protein S18; Provisional 100.0
PRK04053149 rps13p 30S ribosomal protein S13P; Reviewed 100.0
TIGR03629144 arch_S13P archaeal ribosomal protein S13P. This mo 100.0
COG0099121 RpsM Ribosomal protein S13 [Translation, ribosomal 100.0
CHL00137122 rps13 ribosomal protein S13; Validated 100.0
TIGR03631113 bact_S13 30S ribosomal protein S13. This model des 100.0
PRK05179122 rpsM 30S ribosomal protein S13; Validated 100.0
KOG3311|consensus152 100.0
PF00416107 Ribosomal_S13: Ribosomal protein S13/S18; InterPro 100.0
PF0683192 H2TH: Formamidopyrimidine-DNA glycosylase H2TH dom 97.18
PRK01103274 formamidopyrimidine/5-formyluracil/ 5-hydroxymethy 96.98
PRK14810272 formamidopyrimidine-DNA glycosylase; Provisional 96.49
PRK14811269 formamidopyrimidine-DNA glycosylase; Provisional 96.32
PRK10445263 endonuclease VIII; Provisional 96.21
PRK13945282 formamidopyrimidine-DNA glycosylase; Provisional 96.2
TIGR00577272 fpg formamidopyrimidine-DNA glycosylase (fpg). All 96.09
PRK04184 535 DNA topoisomerase VI subunit B; Validated 95.87
TIGR01052 488 top6b DNA topoisomerase VI, B subunit. This model 94.44
PF05833 455 FbpA: Fibronectin-binding protein A N-terminus (Fb 93.82
COG0266273 Nei Formamidopyrimidine-DNA glycosylase [DNA repli 93.68
PF0063330 HHH: Helix-hairpin-helix motif; InterPro: IPR00044 93.59
COG1389 538 DNA topoisomerase VI, subunit B [DNA replication, 92.5
KOG3311|consensus152 91.94
PF1179832 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 90.34
PF1452060 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU 88.15
PF1039152 DNA_pol_lambd_f: Fingers domain of DNA polymerase 88.05
PRK00274272 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 87.78
COG3743133 Uncharacterized conserved protein [Function unknow 87.18
TIGR00275400 flavoprotein, HI0933 family. The model when search 86.64
smart0027826 HhH1 Helix-hairpin-helix DNA-binding motif class 1 86.23
PRK02515132 psbU photosystem II complex extrinsic protein prec 86.14
COG0030259 KsgA Dimethyladenosine transferase (rRNA methylati 85.86
PRK14606188 ruvA Holliday junction DNA helicase RuvA; Provisio 82.67
PF1457990 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI 82.08
PF09883225 DUF2110: Uncharacterized protein conserved in arch 81.82
TIGR00755253 ksgA dimethyladenosine transferase. Alternate name 81.68
PRK14601183 ruvA Holliday junction DNA helicase RuvA; Provisio 81.66
PF03486409 HI0933_like: HI0933-like protein; InterPro: IPR004 81.55
PRK14603197 ruvA Holliday junction DNA helicase RuvA; Provisio 80.66
PRK14604195 ruvA Holliday junction DNA helicase RuvA; Provisio 80.41
>PTZ00134 40S ribosomal protein S18; Provisional Back     alignment and domain information 
Probab=100.00  E-value=2.4e-62  Score=372.42  Aligned_cols=137  Identities=72%  Similarity=1.122  Sum_probs=134.8

Q ss_pred             CCccCCCCeeeeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhCCCCcCCCcccccccccccCCce
Q psy1365           1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDGKY   80 (140)
Q Consensus         1 ~~t~l~~~k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~~~~~~i~~w~~nr~~d~~tg~~   80 (140)
                      +|||||++|+|.+||++|||||+++|.+||++|||||++++++||++|+++|.++|++|.+|.+|+||+|||+|++||+|
T Consensus        18 ~~~~l~~~K~v~~aLt~I~GIG~~~A~~I~~~lgi~~~~~~~~Lt~~qi~~l~~~i~~~~~~~iP~w~~nr~kd~~tG~d   97 (154)
T PTZ00134         18 LNTNVDGKRKVPYALTAIKGIGRRFAYLVCKKAGIDVTKRAGELTAEEIEKIVEIIANPLQFKIPDWFLNRQRDPKDGKN   97 (154)
T ss_pred             cCccCCCCCEEEEeecccccccHHHHHHHHHHcCcCcCCCcccCCHHHHHHHHHHHhccccCCCChhHhhccccccccch
Confidence            68999999999999999999999999999999999999999999999999999999987779999999999999999999


Q ss_pred             eEeeccchhHHHHHHHHHHHHHHhhhheeccCCCCCCccCCccccccCCCccceeeeccC
Q psy1365          81 SQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK  140 (140)
Q Consensus        81 ~~l~~~~~~~L~~~~~~~I~rl~~i~syRG~RH~~gLpVRGQRTrtN~rt~~~~gv~~kk  140 (140)
                      .|+++   +||++++++||+||++|+||||+||++||||||||||||||+|+++||++||
T Consensus        98 ~h~i~---~dL~~~~~~dI~Rl~~I~sYRG~RH~~GLpVRGQRTkTnaR~g~~~gv~~kk  154 (154)
T PTZ00134         98 SHLTS---NMLDTKLREDLERLKKIRLHRGLRHHWGLRVRGQHTKTTGRRGRTVGVSRKK  154 (154)
T ss_pred             hhhhH---HHHHHHHHHHHHHHHHhcchheeecccCCccCCccCCCCCccccccceeccC
Confidence            99999   9999999999999999999999999999999999999999999999999997

>PRK04053 rps13p 30S ribosomal protein S13P; Reviewed Back     alignment and domain information
>TIGR03629 arch_S13P archaeal ribosomal protein S13P Back     alignment and domain information
>COG0099 RpsM Ribosomal protein S13 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>CHL00137 rps13 ribosomal protein S13; Validated Back     alignment and domain information
>TIGR03631 bact_S13 30S ribosomal protein S13 Back     alignment and domain information
>PRK05179 rpsM 30S ribosomal protein S13; Validated Back     alignment and domain information
>KOG3311|consensus Back     alignment and domain information
>PF00416 Ribosomal_S13: Ribosomal protein S13/S18; InterPro: IPR001892 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>PF06831 H2TH: Formamidopyrimidine-DNA glycosylase H2TH domain; InterPro: IPR015886 This entry represents a helix-2turn-helix DNA-binding domain found in DNA glycosylase/AP lyase enzymes, which are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents Back     alignment and domain information
>PRK01103 formamidopyrimidine/5-formyluracil/ 5-hydroxymethyluracil DNA glycosylase; Validated Back     alignment and domain information
>PRK14810 formamidopyrimidine-DNA glycosylase; Provisional Back     alignment and domain information
>PRK14811 formamidopyrimidine-DNA glycosylase; Provisional Back     alignment and domain information
>PRK10445 endonuclease VIII; Provisional Back     alignment and domain information
>PRK13945 formamidopyrimidine-DNA glycosylase; Provisional Back     alignment and domain information
>TIGR00577 fpg formamidopyrimidine-DNA glycosylase (fpg) Back     alignment and domain information
>PRK04184 DNA topoisomerase VI subunit B; Validated Back     alignment and domain information
>TIGR01052 top6b DNA topoisomerase VI, B subunit Back     alignment and domain information
>PF05833 FbpA: Fibronectin-binding protein A N-terminus (FbpA); InterPro: IPR008616 This family consists of the N-terminal region of the prokaryotic fibronectin-binding protein, the C-terminal region is IPR008532 from INTERPRO Back     alignment and domain information
>COG0266 Nei Formamidopyrimidine-DNA glycosylase [DNA replication, recombination, and repair] Back     alignment and domain information
>PF00633 HHH: Helix-hairpin-helix motif; InterPro: IPR000445 The HhH motif is an around 20 amino acids domain present in prokaryotic and eukaryotic non-sequence-specific DNA binding proteins [, , ] Back     alignment and domain information
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair] Back     alignment and domain information
>KOG3311|consensus Back     alignment and domain information
>PF11798 IMS_HHH: IMS family HHH motif; InterPro: IPR024728 This helix-hairpin-helix motif is found in proteins belonging to the type-Y family of DNA polymerases [] Back     alignment and domain information
>PF14520 HHH_5: Helix-hairpin-helix domain; PDB: 3AUO_B 3AU6_A 3AU2_A 3B0X_A 3B0Y_A 1SZP_C 3LDA_A 1WCN_A 2JZB_B 2ZTC_A Back     alignment and domain information
>PF10391 DNA_pol_lambd_f: Fingers domain of DNA polymerase lambda; InterPro: IPR018944 DNA polymerases catalyse the addition of dNMPs onto the 3-prime ends of DNA chains Back     alignment and domain information
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed Back     alignment and domain information
>COG3743 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>TIGR00275 flavoprotein, HI0933 family Back     alignment and domain information
>smart00278 HhH1 Helix-hairpin-helix DNA-binding motif class 1 Back     alignment and domain information
>PRK02515 psbU photosystem II complex extrinsic protein precursor U; Provisional Back     alignment and domain information
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK14606 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A Back     alignment and domain information
>PF09883 DUF2110: Uncharacterized protein conserved in archaea (DUF2110); InterPro: IPR016757 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function Back     alignment and domain information
>TIGR00755 ksgA dimethyladenosine transferase Back     alignment and domain information
>PRK14601 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases Back     alignment and domain information
>PRK14603 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information
>PRK14604 ruvA Holliday junction DNA helicase RuvA; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query140
2zkq_m152 Structure Of A Mammalian Ribosomal 40s Subunit With 6e-50
3iz6_M152 Localization Of The Small Subunit Ribosomal Protein 1e-45
3izb_M146 Localization Of The Small Subunit Ribosomal Protein 2e-41
1s1h_M132 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 2e-41
3jyv_M130 Structure Of The 40s Rrna And Proteins And PE TRNA 3e-41
3zey_M153 High-resolution Cryo-electron Microscopy Structure 1e-33
2xzm_M155 Crystal Structure Of The Eukaryotic 40s Ribosomal S 2e-30
3j20_O148 Promiscuous Behavior Of Proteins In Archaeal Riboso 2e-20
>pdb|2ZKQ|MM Chain m, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 152 Back     alignment and structure 
Iteration: 1

 Score =  192 bits (488), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 87/119 (73%), Positives = 107/119 (89%), Gaps = 3/119 (2%)
Query: 1   MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
           ++TNIDG+RK+ FA+TAIKG GRR++++VL+KADIDL KRAGE +E+EV+++ITIM NPR
Sbjct: 16  LNTNIDGRRKIAFAITAIKGVGRRYAHVVLRKADIDLTKRAGELTEDEVERVITIMQNPR 75
Query: 61  QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRV 119
           QYKIPDWFLNRQKD+ DGKYSQ+L      LD+KLREDLERLKKIRAHRG+RH+WGLRV
Sbjct: 76  QYKIPDWFLNRQKDVKDGKYSQVLANG---LDNKLREDLERLKKIRAHRGLRHFWGLRV 131
>pdb|3IZ6|M Chain M, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 152 Back     alignment and structure
>pdb|3IZB|M Chain M, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 146 Back     alignment and structure
>pdb|1S1H|M Chain M, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 132 Back     alignment and structure
>pdb|3JYV|M Chain M, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 130 Back     alignment and structure
>pdb|3ZEY|M Chain M, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 153 Back     alignment and structure
>pdb|2XZM|M Chain M, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 155 Back     alignment and structure
>pdb|3J20|O Chain O, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 148 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query140
2xzm_M155 RPS18E; ribosome, translation; 3.93A {Tetrahymena 3e-71
3iz6_M152 40S ribosomal protein S18 (S13P); eukaryotic ribos 5e-71
3u5c_S146 40S ribosomal protein S18-A, 40S ribosomal protein 6e-64
2vqe_M126 30S ribosomal protein S13, 30S ribosomal protein S 3e-15
3r8n_M114 30S ribosomal protein S13; protein biosynthesis, R 8e-14
3bbn_M145 Ribosomal protein S13; small ribosomal subunit, sp 8e-11
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M Length = 155 Back     alignment and structure
 Score =  209 bits (534), Expect = 3e-71
 Identities = 74/140 (52%), Positives = 98/140 (70%), Gaps = 3/140 (2%)

Query: 1   MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPR 60
           ++TNIDGKR    ALT I+G GRRF+ I+ K   ID N RAG  +E++ +KI  ++ +P 
Sbjct: 18  LNTNIDGKRITPIALTGIRGIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIADPE 77

Query: 61  QYKIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVR 120
            + IP W LNR  D  DGK  Q+    +  LD+K+REDLERLKKI++HRG+RH+WGL+VR
Sbjct: 78  AHGIPTWLLNRINDFKDGKNYQMA---SNTLDTKMREDLERLKKIKSHRGLRHFWGLKVR 134

Query: 121 GQHTKTTGRRGRTVGVSKKK 140
           GQHTKT+GR G   GV +K 
Sbjct: 135 GQHTKTSGRHGVVCGVVRKN 154
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Length = 152 Back     alignment and structure
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m Length = 146 Back     alignment and structure
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ... Length = 126 Back     alignment and structure
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Length = 145 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query140
3iz6_M152 40S ribosomal protein S18 (S13P); eukaryotic ribos 100.0
3j20_O148 30S ribosomal protein S13P; archaea, archaeal, KIN 100.0
2xzm_M155 RPS18E; ribosome, translation; 3.93A {Tetrahymena 100.0
3u5c_S146 40S ribosomal protein S18-A, 40S ribosomal protein 100.0
2vqe_M126 30S ribosomal protein S13, 30S ribosomal protein S 100.0
3r8n_M114 30S ribosomal protein S13; protein biosynthesis, R 100.0
3bbn_M145 Ribosomal protein S13; small ribosomal subunit, sp 100.0
1k3x_A262 Endonuclease VIII; hydrolase/DNA, hydrolase-DNA co 95.93
1ee8_A266 MUTM (FPG) protein; beta sandwich, zinc finger, he 95.92
1k82_A268 Formamidopyrimidine-DNA glycosylase; protein-DNA c 95.9
2xzf_A271 Formamidopyrimidine-DNA glycosylase; hydrolase-DNA 95.89
3u6p_A273 Formamidopyrimidine-DNA glycosylase; DNA glycosyla 95.87
3twl_A310 Formamidopyrimidine-DNA glycosylase 1; helix two t 95.7
3w0f_A287 Endonuclease 8-like 3; helix two turns helix, zinc 95.69
3vk8_A295 Probable formamidopyrimidine-DNA glycosylase; DNA 95.61
1mu5_A471 Type II DNA topoisomerase VI subunit B; GHKL ATPas 94.88
1kft_A78 UVRC, excinuclease ABC subunit C; helix-hairpin-he 92.12
3fut_A271 Dimethyladenosine transferase; methyltransferase, 90.65
2a1j_A63 DNA repair endonuclease XPF; XPF, xeroderma pigmen 89.98
3arc_U97 Photosystem II 12 kDa extrinsic protein; PSII, mem 88.69
1qyr_A252 KSGA, high level kasugamycin resistance protein, S 88.19
1tdh_A364 NEI endonuclease VIII-like 1; helix two turns heli 87.78
2zbk_B 530 Type 2 DNA topoisomerase 6 subunit B; DNA binding 86.36
1x2i_A75 HEF helicase/nuclease; alpha helix, helix-hairpin- 86.22
3ftd_A249 Dimethyladenosine transferase; KSGA, rossmann-like 84.22
1s5l_U134 Photosystem II 12 kDa extrinsic protein; photosynt 84.06
3uzu_A279 Ribosomal RNA small subunit methyltransferase A; s 83.53
2duy_A75 Competence protein comea-related protein; helix-ha 82.62
1z00_A89 DNA excision repair protein ERCC-1; helix-hairpin- 81.99
2a1j_B91 DNA excision repair protein ERCC-1; XPF, xeroderma 81.61
3fhg_A207 Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; hel 81.3
3tqs_A255 Ribosomal RNA small subunit methyltransferase A; p 81.27
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} Back     alignment and structure
Probab=100.00  E-value=1.5e-64  Score=382.73  Aligned_cols=137  Identities=72%  Similarity=1.214  Sum_probs=135.3

Q ss_pred             CCccCCCCeeeeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhCCCCcCCCcccccccccccCCce
Q psy1365           1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDGKY   80 (140)
Q Consensus         1 ~~t~l~~~k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~~~~~~i~~w~~nr~~d~~tg~~   80 (140)
                      +|||||++|+|.+|||+|||||+++|.+||+++||||++++++||++|+++|.++|++|.+|.||+||+|||+|++||++
T Consensus        16 ~g~~i~~~k~v~~ALt~I~GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~~~~~~ip~w~lNr~kD~~~G~~   95 (152)
T 3iz6_M           16 LNTNVDGKQKIMFALTSIKGVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHNPRQFKVPDWFLNRKKDYKDGRF   95 (152)
T ss_dssp             TTTCCCCSSBHHHHHTTSTTCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHSCSSCCCCCCSCSCCCSCCCCSC
T ss_pred             cCCcCCCCcEeHhhhhhccCcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHhhcccCcchhhhhhhcccCCcce
Confidence            68999999999999999999999999999999999999999999999999999999998889999999999999999999


Q ss_pred             eEeeccchhHHHHHHHHHHHHHHhhhheeccCCCCCCccCCccccccCCCccceeeeccC
Q psy1365          81 SQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRRGRTVGVSKKK  140 (140)
Q Consensus        81 ~~l~~~~~~~L~~~~~~~I~rl~~i~syRG~RH~~gLpVRGQRTrtN~rt~~~~gv~~kk  140 (140)
                      .|+++   +||++++++||+||++|+||||+||.+||||||||||||||||+||||+|||
T Consensus        96 ~~li~---~dL~~~~~~dI~RL~~I~~yRG~RH~~GLpVRGQrTkTnaRtg~tvgv~kkk  152 (152)
T 3iz6_M           96 SQVVS---NAVDMKLRDDLERLKKIRNHRGLRHYWGVRVRGQHTKTTGRRGKTVGVSKKR  152 (152)
T ss_dssp             CTTCT---HHHHHHHHHHHHHHHHHTCHHHHHHHHTCCSSCCCCSSCCHHHHCSCCSSCC
T ss_pred             eeech---hHHHHHHHHhHHHHhhhheeecccccCCCCcCCcCCcCCCCCceecceecCC
Confidence            99999   9999999999999999999999999999999999999999999999999997
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M Back     alignment and structure
>3u5c_S 40S ribosomal protein S18-A, 40S ribosomal protein S17-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_M 3o30_L 3o2z_L 3u5g_S 1s1h_M 3jyv_M* 2zkq_m Back     alignment and structure
>2vqe_M 30S ribosomal protein S13, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.156.1.1 PDB: 1gix_P* 1hnw_M* 1hnx_M* 1hnz_M* 1hr0_M 1ibk_M* 1ibl_M* 1ibm_M 1j5e_M 1jgo_P* 1jgp_P* 1jgq_P* 1mj1_P* 1ml5_P* 1n32_M* 1n33_M* 1n34_M 1n36_M 1xmo_M* 1xmq_M* ... Back     alignment and structure
>3bbn_M Ribosomal protein S13; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} Back     alignment and structure
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A* Back     alignment and structure
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Back     alignment and structure
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Back     alignment and structure
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A* Back     alignment and structure
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ... Back     alignment and structure
>3twl_A Formamidopyrimidine-DNA glycosylase 1; helix two turns helix, zinc-LESS finger, hydrolase, DNA DAMA repair, DNA-binding, glycosidase, lyase; 1.70A {Arabidopsis thaliana} PDB: 3twm_A* 3twk_A Back     alignment and structure
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus} Back     alignment and structure
>3vk8_A Probable formamidopyrimidine-DNA glycosylase; DNA glycosylase, hneil1 ortholog, DNA lesion, thymine glycol zincless finger; HET: DNA CTG; 2.00A {Acanthamoeba polyphaga mimivirus} PDB: 3vk7_A* 3a42_A 3a46_A* 3a45_A* Back     alignment and structure
>1mu5_A Type II DNA topoisomerase VI subunit B; GHKL ATPase, helix two-turns helix; 2.00A {Sulfolobus shibatae} SCOP: a.156.1.3 d.14.1.3 d.122.1.2 PDB: 1mx0_A* 1z5b_A* 1z5a_A* 1z59_A* 1z5c_A* 2hkj_A* Back     alignment and structure
>1kft_A UVRC, excinuclease ABC subunit C; helix-hairpin-helix, HHH domain, DNA-binding domain, DNA binding protein; NMR {Escherichia coli} SCOP: a.60.2.3 Back     alignment and structure
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* Back     alignment and structure
>2a1j_A DNA repair endonuclease XPF; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 PDB: 2kn7_A* Back     alignment and structure
>3arc_U Photosystem II 12 kDa extrinsic protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 3bz1_U* 2axt_U* 3bz2_U* 3kzi_U* 3prq_U* 3prr_U* 3a0b_U* 3a0h_U* Back     alignment and structure
>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A Back     alignment and structure
>1tdh_A NEI endonuclease VIII-like 1; helix two turns helix, zinc-LESS finger, hydrolase; 2.10A {Homo sapiens} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 Back     alignment and structure
>2zbk_B Type 2 DNA topoisomerase 6 subunit B; DNA binding protein, decatenation, ATPase, drug design, DNA-binding, magnesium, metal-binding; HET: RDC; 3.56A {Sulfolobus shibatae} Back     alignment and structure
>1x2i_A HEF helicase/nuclease; alpha helix, helix-hairpin-helix DNA binding domain, homodimer, hydrolase; 1.45A {Pyrococcus furiosus} SCOP: a.60.2.5 Back     alignment and structure
>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* Back     alignment and structure
>1s5l_U Photosystem II 12 kDa extrinsic protein; photosynthesis, oxygen-evolving, tetra- manganese, membrane; HET: CL1 PHO HEM PL9 LMT BCR; 3.50A {Thermosynechococcus elongatus} Back     alignment and structure
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} Back     alignment and structure
>2duy_A Competence protein comea-related protein; helix-hairpin-helix, structural genomics, NPPSFA; 1.75A {Thermus thermophilus} SCOP: a.60.2.7 Back     alignment and structure
>1z00_A DNA excision repair protein ERCC-1; helix-hairpin-helix, hydrolase; HET: DNA; NMR {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>2a1j_B DNA excision repair protein ERCC-1; XPF, xeroderma pigmentosum, DNA repair, endonuclease, helix-hairpin-helix, DNA binding protein; HET: DNA; 2.70A {Homo sapiens} SCOP: a.60.2.5 Back     alignment and structure
>3fhg_A Mjogg, N-glycosylase/DNA lyase, DNA-(apurinic; helix-hairpin-helix, 8-oxoguanine, 8-OXOG, DNA damage, DNA repair, glycosidase, hydrolase; 1.90A {Sulfolobus solfataricus} Back     alignment and structure
>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 140
d2uubm1125 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus 1e-30
d2gy9m1114 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escheri 2e-27
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]} Length = 125 Back     information, alignment and structure

class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Ribosomal protein S13
domain: Ribosomal protein S13
species: Thermus thermophilus [TaxId: 274]

 Score =  104 bits (261), Expect = 1e-30
 Identities = 40/140 (28%), Positives = 63/140 (45%), Gaps = 27/140 (19%)

Query: 3   TNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQY 62
             I   ++V  ALT I G G+  +   L+K  I+   R  + +E EV ++       R+Y
Sbjct: 6   VEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRL-------REY 58

Query: 63  KIPDWFLNRQKDIVDGKYSQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQ 122
               W L  +                  L +++  +++RL  I  +RG+RH  GL VRGQ
Sbjct: 59  VENTWKLEGE------------------LRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQ 100

Query: 123 HTKTTGR--RGRTVGVSKKK 140
            T+T  R  +G    V+ KK
Sbjct: 101 RTRTNARTRKGPRKTVAGKK 120
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]} Length = 114 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query140
d2uubm1125 Ribosomal protein S13 {Thermus thermophilus [TaxId 100.0
d2gy9m1114 Ribosomal protein S13 {Escherichia coli [TaxId: 56 100.0
d2hkja178 Topoisomerase VI-B subunit middle domain {Archaeon 98.31
d1r2za194 DNA repair protein MutM (Fpg) {Bacillus stearother 97.49
d1ee8a189 DNA repair protein MutM (Fpg) {Thermus thermophilu 97.49
d1k3xa189 Endonuclease VIII {Escherichia coli [TaxId: 562]} 97.48
d1k82a188 DNA repair protein MutM (Fpg) {Escherichia coli [T 97.45
d1tdza188 DNA repair protein MutM (Fpg) {Lactococcus lactis 97.43
d2bgwa170 DNA repair endonuclease XPF {Aeropyrum pernix [Tax 94.96
d2i1qa160 DNA repair protein Rad51, N-terminal domain {Archa 94.54
d2fmpa257 DNA polymerase beta {Human (Homo sapiens) [TaxId: 94.45
d1pzna161 DNA repair protein Rad51, N-terminal domain {Archa 94.25
d2bcqa257 DNA polymerase lambda {Human (Homo sapiens) [TaxId 93.87
d1jmsa360 Terminal deoxynucleotidyl transferase {Mouse (Mus 93.64
d2a1jb178 DNA excision repair protein ERCC-1 {Human (Homo sa 93.29
d1tdha1115 Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapi 92.81
d1x2ia168 ATP-dependent RNA helicase PF2015 {Pyrococcus furi 92.26
d1kfta_56 Excinuclease UvrC C-terminal domain {Escherichia c 92.19
d2i0za2169 Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396] 91.5
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 91.2
d1ixra173 DNA helicase RuvA subunit, middle domain {Thermus 90.71
d2axtu198 Photosystem II 12 kDa extrinsic protein PsbU {Ther 90.22
d1cuka278 DNA helicase RuvA subunit, middle domain {Escheric 89.33
d2gqfa2148 Hypothetical protein HI0933 {Haemophilus influenza 87.75
d2duya165 Uncharacterized protein TTHA1967 {Thermus thermoph 83.68
d2a1ja162 DNA repair endonuclease XPF {Human (Homo sapiens) 82.39
d1qyra_252 High level kasugamycin resistance protein KsgA {Es 82.32
d1bvsa271 DNA helicase RuvA subunit, middle domain {Mycobact 82.14
>d2uubm1 a.156.1.1 (M:2-126) Ribosomal protein S13 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: All alpha proteins
fold: S13-like H2TH domain
superfamily: S13-like H2TH domain
family: Ribosomal protein S13
domain: Ribosomal protein S13
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=3.3e-50  Score=293.99  Aligned_cols=115  Identities=33%  Similarity=0.500  Sum_probs=109.3

Q ss_pred             CCccCCCCeeeeeecccccccCcchHHHHHhHhCCCCCCccCCCCHHHHHHHHHHHhCCCCcCCCcccccccccccCCce
Q psy1365           1 MSTNIDGKRKVMFALTAIKGCGRRFSNIVLKKADIDLNKRAGECSEEEVDKIITIMTNPRQYKIPDWFLNRQKDIVDGKY   80 (140)
Q Consensus         1 ~~t~l~~~k~v~~ALt~IyGIG~~~A~~Ic~~lGI~~~~~~~~Ls~~qi~~L~~~I~~~~~~~i~~w~~nr~~d~~tg~~   80 (140)
                      +|||||++|+|.+||++|||||+++|.+||+.+||||++++++||++|++.|.++|++  .|.++               
T Consensus         4 ~g~di~~~K~v~~ALt~I~GIG~~~A~~Ic~~lgId~~~k~~~Lt~~qi~~I~~~i~~--~~~i~---------------   66 (125)
T d2uubm1           4 AGVEIPRNKRVDVALTYIYGIGKARAKEALEKTGINPATRVKDLTEAEVVRLREYVEN--TWKLE---------------   66 (125)
T ss_dssp             STTCCCCSSBHHHHHTTSTTCCHHHHHHHHHTTTCCTTSBGGGCCHHHHHHHHHHHHH--HSCCT---------------
T ss_pred             cCccCCCCCEEEEeeeeeeCcCHHHHHHHHHHcCCCcccccccccHHHHHHHHHHHhh--hhhhH---------------
Confidence            5899999999999999999999999999999999999999999999999999999986  34444               


Q ss_pred             eEeeccchhHHHHHHHHHHHHHHhhhheeccCCCCCCccCCccccccCCC--ccceeeeccC
Q psy1365          81 SQILLTSTAQLDSKLREDLERLKKIRAHRGMRHYWGLRVRGQHTKTTGRR--GRTVGVSKKK  140 (140)
Q Consensus        81 ~~l~~~~~~~L~~~~~~~I~rl~~i~syRG~RH~~gLpVRGQRTrtN~rt--~~~~gv~~kk  140 (140)
                              +||++++++||+||++|+||||+||.+|||||||||||||||  |.++||++||
T Consensus        67 --------~~L~~~~~~dIkrl~~i~~yRG~RH~~gLpvRGQRT~tN~rt~kg~~~~v~~kk  120 (125)
T d2uubm1          67 --------GELRAEVAANIKRLMDIGCYRGLRHRRGLPVRGQRTRTNARTRKGPRKTVAGKK  120 (125)
T ss_dssp             --------THHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSSCCCSSCCHHHHCSCCCCCCCS
T ss_pred             --------HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCCCCCCCCCCccccCCCcccccccc
Confidence                    899999999999999999999999999999999999999996  7899999986
>d2gy9m1 a.156.1.1 (M:1-114) Ribosomal protein S13 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2hkja1 a.156.1.3 (A:229-306) Topoisomerase VI-B subunit middle domain {Archaeon Sulfolobus shibatae [TaxId: 2286]} Back     information, alignment and structure
>d1r2za1 a.156.1.2 (A:135-228) DNA repair protein MutM (Fpg) {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ee8a1 a.156.1.2 (A:122-210) DNA repair protein MutM (Fpg) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1k3xa1 a.156.1.2 (A:125-213) Endonuclease VIII {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1k82a1 a.156.1.2 (A:129-216) DNA repair protein MutM (Fpg) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1tdza1 a.156.1.2 (A:132-219) DNA repair protein MutM (Fpg) {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d2bgwa1 a.60.2.5 (A:160-229) DNA repair endonuclease XPF {Aeropyrum pernix [TaxId: 56636]} Back     information, alignment and structure
>d2i1qa1 a.60.4.1 (A:5-64) DNA repair protein Rad51, N-terminal domain {Archaeon Methanococcus voltae [TaxId: 2188]} Back     information, alignment and structure
>d2fmpa2 a.60.12.1 (A:92-148) DNA polymerase beta {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pzna1 a.60.4.1 (A:35-95) DNA repair protein Rad51, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d2bcqa2 a.60.12.1 (A:329-385) DNA polymerase lambda {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jmsa3 a.60.12.1 (A:243-302) Terminal deoxynucleotidyl transferase {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2a1jb1 a.60.2.5 (B:219-296) DNA excision repair protein ERCC-1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1tdha1 a.156.1.2 (A:132-246) Endonuclease VIII-like 1 (NEIL1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1x2ia1 a.60.2.5 (A:2-69) ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1kfta_ a.60.2.3 (A:) Excinuclease UvrC C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2i0za2 e.74.1.1 (A:193-361) Flavoprotein BC4706 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure
>d1ixra1 a.60.2.1 (A:63-135) DNA helicase RuvA subunit, middle domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2axtu1 a.60.12.2 (U:37-134) Photosystem II 12 kDa extrinsic protein PsbU {Thermosynechococcus elongatus [TaxId: 146786]} Back     information, alignment and structure
>d1cuka2 a.60.2.1 (A:65-142) DNA helicase RuvA subunit, middle domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2gqfa2 e.74.1.1 (A:195-342) Hypothetical protein HI0933 {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2duya1 a.60.2.7 (A:11-75) Uncharacterized protein TTHA1967 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2a1ja1 a.60.2.5 (A:837-898) DNA repair endonuclease XPF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bvsa2 a.60.2.1 (A:64-134) DNA helicase RuvA subunit, middle domain {Mycobacterium leprae [TaxId: 1769]} Back     information, alignment and structure