Psyllid ID: psy13739

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------9
Protein Sequence
MSHTSPYPVPIHYLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLSTTHPVPTHYPSGPYPVPIHYLSSPHPHSVE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mshtspypvpihylssphplpiqspstthpvpthypsspypvpihylssphplpiqslstthpvpthypsgpypvpihylssphphsve
Flexible Loop (DISEMBL)
mshtspypvPIHYLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLSTTHPVPTHYPSGPYPVPIHYLSSPHPHSVE
Low Complexity Region (SEG)
MSHTSPYPVPIHYLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLSTTHPVPTHYPSGPYPVPIHYLSSPHPHSVE
Disordered region (IsUnstruct)
*****************************************************************************************
Disordered Region (DISOPRED)
****SPY**********************************************************************************
Disordered Region (DISEMBL)
MSHTSPYPVPIHYLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLSTTHPVPTHYPSGPYPVPIHYLS********
Disordered Region (DISPRO)
*****PYPV*IHYLSSPHPLPIQSPSTTHP**THYPSSPYPV****LSSPH**************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSHTSPYPVPIHYLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLSTTHPVPTHYPSGPYPVPIHYLSSPHPHSVE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
156369977	118	predicted protein [Nematostella vectensi	0.910	0.686	0.447	1e-05
291239392	793	PREDICTED: restin-like [Saccoglossus kow	0.943	0.105	0.392	5e-05
291416328	896	PREDICTED: trafficking protein particle	0.955	0.094	0.411	0.0007

>gi|156369977|ref|XP_001628249.1| predicted protein [Nematostella vectensis] gi|156215221|gb|EDO36186.1| predicted protein [Nematostella vectensis]

 Score = 53.9 bits (128), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/85 (44%), Positives = 47/85 (55%)

Query: 1   MSHTSPYPVPIHYLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLST 60
           +S + P  VP+  LS P P+P+ S S   PVP    S P PVP+  LS P P+P+ SLS 
Sbjct: 23  LSLSCPSLVPLLSLSCPSPVPLLSLSCPSPVPLLSLSCPSPVPLLSLSCPSPVPLLSLSC 82

Query: 61  THPVPTHYPSGPYPVPIHYLSSPHP 85
             PVP    S P P P+  LS P P
Sbjct: 83  LSPVPLLSLSCPSPFPLLSLSCPSP 107

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|291239392|ref|XP_002739607.1| PREDICTED: restin-like [Saccoglossus kowalevskii]

 Score = 52.0 bits (123), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/84 (39%), Positives = 44/84 (52%)

Query: 2   SHTSPYPVPIHYLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLSTT 61
           S ++P P P +  S+P P P  S ST  P P +  S+P P P +  S+P P P  S ST 
Sbjct: 669 SQSTPEPTPCNSQSTPEPTPCNSQSTPEPTPCNSQSTPEPTPCNSQSTPEPTPCNSQSTP 728

Query: 62  HPVPTHYPSGPYPVPIHYLSSPHP 85
            P P +  S P P P +  S+P P
Sbjct: 729 EPTPCNSQSTPEPTPCNSQSTPEP 752

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota

>gi|291416328|ref|XP_002724397.1| PREDICTED: trafficking protein particle complex 10, partial [Oryctolagus cuniculus]

 Score = 48.1 bits (113), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 35/85 (41%), Positives = 50/85 (58%)

Query: 1   MSHTSPYPVPIHYLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLST 60
           ++ ++P+P+P    S+P PLP  + ST  PVP    S+P+P+P    S+P PLP  + ST
Sbjct: 484 VAFSAPFPLPRVAFSAPFPLPRVAFSTPFPVPRVAFSAPFPLPRVAFSTPFPLPRVTFST 543

Query: 61  THPVPTHYPSGPYPVPIHYLSSPHP 85
             PVP    S P+PVP    S+P P
Sbjct: 544 PFPVPRVAFSVPFPVPRVTFSAPFP 568

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	89
TAIR|locus:2142105	760	LRX3 "AT4G13340" [Arabidopsis	0.887	0.103	0.426	2e-09
FB|FBgn0051626	285	CG31626 [Drosophila melanogast	0.932	0.291	0.287	2.4e-07
TAIR|locus:2124142	857	AT4G18670 "AT4G18670" [Arabido	0.853	0.088	0.435	4.1e-07
TAIR|locus:2154399	205	TED7 "AT5G48920" [Arabidopsis	0.786	0.341	0.378	1.2e-06
TAIR|locus:2041061	212	AT2G43150 [Arabidopsis thalian	0.820	0.344	0.4	1.8e-06
TAIR|locus:2025262	373	EXT4 "extensin 4" [Arabidopsis	0.764	0.182	0.416	4e-06
TAIR|locus:2168499	288	AT5G59170 [Arabidopsis thalian	0.831	0.256	0.379	4.1e-06
TAIR|locus:2098760	250	AT3G50580 [Arabidopsis thalian	0.876	0.312	0.421	4.9e-06
TAIR|locus:2085889	956	AT3G19020 [Arabidopsis thalian	0.820	0.076	0.404	7e-06
TAIR|locus:2044576	727	AT2G15880 [Arabidopsis thalian	0.831	0.101	0.402	8.2e-06

TAIR|locus:2142105 LRX3 "AT4G13340" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 2.0e-09, P = 2.0e-09
 Identities = 35/82 (42%), Positives = 43/82 (52%)

Query:     6 PYPVPIHYLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLSTTHPVP 65
             P P P    S P P P+   S+  P P +Y SSP P P++Y S P P P+   S+  P  
Sbjct:   619 PPPPPCIEYSPPPPPPVVHYSSPPPPPVYY-SSPPPPPVYYSSPPPPPPVH-YSSPPPPE 676

Query:    66 THYPSGPYPVPIHYLSSPHPHS 87
              HY S P P P+HY S P P S
Sbjct:   677 VHYHSPP-PSPVHYSSPPPPPS 697

GO:0005515 "protein binding" evidence=IPI

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0005618 "cell wall" evidence=IDA

GO:0009505 "plant-type cell wall" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

FB|FBgn0051626 CG31626 [Drosophila melanogaster (taxid:7227)]

 Score = 123 (48.4 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 25/87 (28%), Positives = 41/87 (47%)

Query:     3 HTSPYPVPI-HYLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPL---PIQSL 58
             +++P P P+  YL     +P  +P  + P P    S+P P P++   +P P    P+Q L
Sbjct:   167 YSAPAPAPVSEYLPPVQDIPAPAPVYSAPAPAPVYSAPAPAPVYSAPAPAPEYLPPVQDL 226

Query:    59 STTHPVPTHYPSGPYPVPIHYLSSPHP 85
                 P P +    P P P++   +P P
Sbjct:   227 PAPAPAPVYSAPAPAPAPVYSAPAPAP 253

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2124142 AT4G18670 "AT4G18670" [Arabidopsis thaliana (taxid:3702)]

 Score = 128 (50.1 bits), Expect = 4.1e-07, P = 4.1e-07
 Identities = 37/85 (43%), Positives = 38/85 (44%)

Query:     6 PYPVPIHYLSSPHPLPIQSPSTTHPVPT-HYPSSPYP-VPIHYLSSP---HPLPIQSLST 60
             P P P +Y SSP P P    S   P PT HY S P P  PIH  S P   HP P    S 
Sbjct:   721 PPPAPYYY-SSPQPPPPPHYSLPPPTPTYHYISPPPPPTPIH--SPPPQSHP-PCIEYSP 776

Query:    61 THPVPTHYPSGPYPVPIHYLSSPHP 85
               P   HY   P P P HY   P P
Sbjct:   777 PPPPTVHYNPPPPPSPAHYSPPPSP 801

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2154399 TED7 "AT5G48920" [Arabidopsis thaliana (taxid:3702)]

 Score = 113 (44.8 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 31/82 (37%), Positives = 38/82 (46%)

Query:     5 SPYPVPIHYLSSPHPLPIQSPSTTHPVPTHY------PSSPYPVPIHYLSSPHPLPIQSL 58
             SP P P  ++S P P P   P   HP P H+      P SPYP P     SP+P P Q  
Sbjct:    22 SPVPPPPSHISPPPP-PFSPPH--HPPPPHFSPPHQPPPSPYPHPHPPPPSPYPHPHQPP 78

Query:    59 STTHPVPTHYPSGPYPVPIHYL 80
                H +P   P  P P P H++
Sbjct:    79 PPPHVLP---PPPPTPAPGHHV 97

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009834 "secondary cell wall biogenesis" evidence=IGI

TAIR|locus:2041061 AT2G43150 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 1.8e-06, P = 1.8e-06
 Identities = 38/95 (40%), Positives = 48/95 (50%)

Query:     3 HTSPYPV----PIHYLSSPHPLPIQSPSTTHPVPTHYPSSPYPV----PIHYLSSPHPLP 54
             H+ P PV    P +  SSP P P++SP    P P +Y S P PV    P +Y  SP P P
Sbjct:    75 HSPPPPVKSPPPPYVYSSPPP-PVKSP----PPPYYYHSPPPPVKSPPPPYYYHSPPP-P 128

Query:    55 IQSLSTTHPVPTHYPSGPYPV----PIHYLSSPHP 85
             ++S     P P +Y S P PV    P +Y  SP P
Sbjct:   129 VKS----PPPPYYYHSPPPPVKSPPPPYYYHSPPP 159

GO:0005199 "structural constituent of cell wall" evidence=IEA

GO:0009664 "plant-type cell wall organization" evidence=IEA

TAIR|locus:2025262 EXT4 "extensin 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 114 (45.2 bits), Expect = 4.0e-06, P = 4.0e-06
 Identities = 35/84 (41%), Positives = 40/84 (47%)

Query:     5 SPYPVPIHYLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLSTTHPV 64
             SP P P+HY  SP P+   SP    P P HY  SP PV  H  S P P       +  P 
Sbjct:   289 SP-PPPVHY--SPPPVVYHSP----PPPVHY--SPPPVVYH--SPPPPKKHYEYKSPPP- 336

Query:    65 PTHY-PSGPY---PVPIHYLSSPH 84
             P HY P   Y   P P+H+ S PH
Sbjct:   337 PVHYSPPTVYHSPPPPVHHYSPPH 360

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2168499 AT5G59170 [Arabidopsis thaliana (taxid:3702)]

 Score = 112 (44.5 bits), Expect = 4.1e-06, P = 4.1e-06
 Identities = 33/87 (37%), Positives = 40/87 (45%)

Query:     7 YPVPIHYLSSPHPLPIQSPSTTHPVPTH-YPSSP--YPVPIHYLSSPHPLPIQSLSTTH- 62
             YP PI     P P+    P   +P P   YP  P  YP P  Y + PHP PI++      
Sbjct:   198 YPPPIK--KYPPPIKKYPPPEEYPPPIKTYPHPPVKYPPP-PYKTYPHP-PIKTYPPPKE 253

Query:    63 --PVPTHYPSGP---YPVPIHYLSSPH 84
               P P HYP  P   YP P+ Y S P+
Sbjct:   254 CPPPPEHYPWPPKKKYPPPVEYPSPPY 280

GO:0045735 "nutrient reservoir activity" evidence=IEA

TAIR|locus:2098760 AT3G50580 [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 4.9e-06, P = 4.9e-06
 Identities = 40/95 (42%), Positives = 43/95 (45%)

Query:     2 SHTSPYPVPIHYLSSPHPLPIQSPS-------TTHPVPTHYPSSPYPVPIHYLSSPHPLP 54
             S  SP P P    S P P P +SPS         HP P   PS P P P    S P P P
Sbjct:    86 STPSP-PPPAPKKSPPPPTPKKSPSPPSLTPFVPHPTPKKSPSPP-PTP----SLPPPAP 139

Query:    55 IQSLSTTH-PVPTHYPSGPYPVPIHYLSSPH--PH 86
              +S ST   P PT   S P P P H+ SSP   PH
Sbjct:   140 KKSPSTPSLPPPTPKKSPP-PPPSHHSSSPSNPPH 173

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2085889 AT3G19020 [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 38/94 (40%), Positives = 44/94 (46%)

Query:     4 TSPYPVPIHYLSSPHPLPIQSPST---THPVPTHYPSSP-Y--PVPIHYLSSPHPLPIQS 57
             TSP   P+H  S P P P+ SP     + P P H P  P Y  P P+H   SP P P+ S
Sbjct:   637 TSPQSPPVH--SPPPPPPVHSPPPPVFSPPPPMHSPPPPVYSPPPPVH---SPPPPPVHS 691

Query:    58 LSTTHPVPTHYPSGPY---PVPIHYLSSPHP-HS 87
                  P P H P  P    P P+H  S P P HS
Sbjct:   692 ----PPPPVHSPPPPVHSPPPPVH--SPPPPVHS 719

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2044576 AT2G15880 [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 8.2e-06, P = 8.2e-06
 Identities = 37/92 (40%), Positives = 44/92 (47%)

Query:     3 HTSPYPVPIHYLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLST-T 61
             H+ P P PIH   SP P P+ SP    P P + P  P P P++  S P P P+ S     
Sbjct:   499 HSPPPPSPIH---SPPPPPVYSPPP--PPPVYSP--PPPPPVY--SPPPPPPVHSPPPPV 549

Query:    62 H--PVPTHYPSGPY---PVPIHYLSSPHP-HS 87
             H  P P H P  P    P P+H  S P P HS
Sbjct:   550 HSPPPPVHSPPPPVHSPPPPVH--SPPPPVHS 579

GO:0005634 "nucleus" evidence=ISM

GO:0005199 "structural constituent of cell wall" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	89
3dzy_A	467	Retinoic acid receptor RXR-alpha; DNA-binding, HOS	4e-04

>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus interaction, metal-binding, nucleus, receptor, transcription, transcription regulation, zinc-FIN activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB: 3dzu_A* 3e00_A* Length = 467

 Score = 36.2 bits (83), Expect = 4e-04
 Identities = 16/83 (19%), Positives = 27/83 (32%)

Query: 2   SHTSPYPVPIHYLSSPHPLPIQSPSTTHPVPTHYPSSPYPVPIHYLSSPHPLPIQSLSTT 61
           + +   P     +++P   P   P    P   H P S    PI+ +  P  +    +   
Sbjct: 21  NSSLTSPTGRGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGPPFSVISSPMGPH 80

Query: 62  HPVPTHYPSGPYPVPIHYLSSPH 84
                  P+  +      LSSP 
Sbjct: 81  SMSVPTTPTLGFSTGSPQLSSPM 103

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00