Psyllid ID: psy13784
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 388 | 2.2.26 [Sep-21-2011] | |||||||
| A5LGM7 | 504 | Facilitated trehalose tra | N/A | N/A | 0.953 | 0.734 | 0.301 | 1e-44 | |
| B4HNS1 | 488 | Facilitated trehalose tra | N/A | N/A | 0.953 | 0.758 | 0.303 | 1e-41 | |
| Q7PIR5 | 793 | Facilitated trehalose tra | no | N/A | 0.956 | 0.467 | 0.298 | 4e-41 | |
| B0WC46 | 517 | Facilitated trehalose tra | N/A | N/A | 0.953 | 0.715 | 0.288 | 6e-41 | |
| Q17NV8 | 806 | Facilitated trehalose tra | N/A | N/A | 0.951 | 0.457 | 0.296 | 7e-41 | |
| A9ZSY2 | 502 | Facilitated trehalose tra | N/A | N/A | 0.966 | 0.747 | 0.298 | 8e-41 | |
| Q8MKK4 | 488 | Facilitated trehalose tra | no | N/A | 0.953 | 0.758 | 0.296 | 2e-40 | |
| B4P624 | 856 | Facilitated trehalose tra | N/A | N/A | 0.951 | 0.431 | 0.304 | 2e-40 | |
| B3NSE1 | 856 | Facilitated trehalose tra | N/A | N/A | 0.948 | 0.429 | 0.311 | 5e-40 | |
| B4QBN3 | 488 | Facilitated trehalose tra | N/A | N/A | 0.953 | 0.758 | 0.298 | 5e-40 |
| >sp|A5LGM7|TRET1_POLVA Facilitated trehalose transporter Tret1 OS=Polypedilum vanderplanki GN=Tret1 PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 181 bits (458), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 116/385 (30%), Positives = 209/385 (54%), Gaps = 15/385 (3%)
Query: 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
++ LGRK I+ + I+ WLLI ++ +I + GR L+G G+++ +Y+ E++
Sbjct: 108 IEYLGRKNTILATAVPFIVAWLLIAFANSIWMVLAGRALSGFCVGIASLSLPVYLGETV- 166
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
++RG+L T G+L + G + + +A + +I + +++T +IPE+P
Sbjct: 167 --QPEVRGTLGLLPTAFGNIGILICFVAGKYVNWSGLAFIGSILP-IPFMVLTLLIPETP 223
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAY 180
W ++GR A A + LR G ++ EP +G +S + E+ ++ N + MK
Sbjct: 224 RWFVTRGREERARKALQWLR-GKKAD-VEPELKGIVKSHCEAERHASQNAIFDLMKRSNL 281
Query: 181 KPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFI 240
KPL+I FQQ S +N ++ Y + +G ++ T+I G++ F + + +
Sbjct: 282 KPLLIALGLMFFQQLSGINAVIFYTVSIFKDAG-STIDENLCTIIVGVVNFGATFFATVL 340
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGTYLLFEKA--PIVNFEWGFFNLIPLAALVLNLVAS 298
+ G K L S + + +++L +GT+ ++ + + N W +PLA+ V+ ++
Sbjct: 341 IDRLGRKILLYISEVAMVITLLTLGTFFYYKNSGNDVSNIGW-----LPLASFVIYVIGF 395
Query: 299 SVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGN-GIFFFYG 357
S G PIP+LMLGEI P +++G AA +AT + F KT+ + A+GN G F+F+G
Sbjct: 396 SSGVGPIPWLMLGEILPGKIRGSAASVATGFNWTCTFIVTKTFADIVAAIGNHGAFWFFG 455
Query: 358 LVAAIGTAHVLAYLPETKGKSLEEI 382
++ IG V+ ++PET+GKSLEEI
Sbjct: 456 VICLIGLFFVIFFVPETQGKSLEEI 480
|
High-capacity facilitative transporter for trehalose, required to induce anhydrobiosis. Anhydrobiotic larvae can survive almost complete dehydration. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Polypedilum vanderplanki (taxid: 319348) |
| >sp|B4HNS1|TRE12_DROSE Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila sechellia GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 170 bits (431), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 117/385 (30%), Positives = 199/385 (51%), Gaps = 15/385 (3%)
Query: 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
++ LGR+ I+ + I+ LLI ++ + + GRFLTG G+++ +Y+ E++
Sbjct: 93 IEYLGRRNTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVYLGETL- 151
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
++RG+L T G+L Y GS + + +A + A IL+ IIPE+P
Sbjct: 152 --QPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSILAFLGAALPVPFLILM-IIIPETP 208
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAY 180
W ++G+ A A K LR G ++ EP + +S A+ + +T N E K
Sbjct: 209 RWFVNRGQEERARKALKWLR-GKEAD-VEPELKDLMQSQAEADSQATRNTCLELFKRINL 266
Query: 181 KPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFI 240
KPL I FQQFS +N ++ Y + +G ++ T+I G++ F + +
Sbjct: 267 KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAG-STIDSNLCTIIVGIVNFFATFMGIIL 325
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGT--YLLFEKAPIVNFEWGFFNLIPLAALVLNLVAS 298
+ G K L S + + L++ ++G Y + + W +PL+ V+ ++
Sbjct: 326 IDRLGRKILLYVSDIAMILTLSILGGFFYCKAHGPDVSHLGW-----LPLSCFVIYILGF 380
Query: 299 SVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYG 357
S+GF PIP+LM+GEI P +++G AA + T + F KT+ L +A+G +G F+ +G
Sbjct: 381 SLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGPHGAFWLFG 440
Query: 358 LVAAIGTAHVLAYLPETKGKSLEEI 382
+V +G V+ Y+PET+GKSLEEI
Sbjct: 441 VVCIVGLFFVIIYVPETRGKSLEEI 465
|
Fails to transport trehalose. Drosophila sechellia (taxid: 7238) |
| >sp|Q7PIR5|TRET1_ANOGA Facilitated trehalose transporter Tret1 OS=Anopheles gambiae GN=Tret1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 169 bits (428), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 114/382 (29%), Positives = 204/382 (53%), Gaps = 11/382 (2%)
Query: 4 LGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQN 63
LGRK I+ II WLLI + + + +GR L+G+ G+++ +Y+ E++
Sbjct: 400 LGRKNTILATATPFIISWLLIGCATHVAMVLVGRALSGLCVGIASLSLPVYLGETV---Q 456
Query: 64 TKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESPAWL 123
++RG+L T G+L + G L + +A + A + +L+ F+IPE+P W
Sbjct: 457 PEVRGTLGLLPTAFGNIGILLCFVAGKYLDWSGLAFLGAAL-PIPFLLLMFLIPETPRWY 515
Query: 124 NSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPL 183
S+ R A A + LR G ++ EP +G ++S E+ ++++ + + KPL
Sbjct: 516 VSRNREDRARKALQWLR-GRKAD-VEPELKGISKSHQDAERHASSSAMLDLLNKANLKPL 573
Query: 184 IIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPH 243
+I FQQ S +N ++ Y +S+G ++ T+I G++ F + + ++
Sbjct: 574 LISLGLMFFQQLSGINAVIFYTVQIFQSAG-STIDEKLCTIIVGVVNFIATFIATVLIDR 632
Query: 244 TGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFL 303
G K L S + + ++++ +GT+ + E G+ +PLAA V+ +V S+GF
Sbjct: 633 LGRKILLYISDVAMIITLMTLGTFFYMKNNGDDVSEIGW---LPLAAFVVFVVGFSLGFG 689
Query: 304 PIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGN-GIFFFYGLVAAI 362
PIP+LM+GEI P +++G AA +AT + F KT+ + ++GN G F+ +G + +
Sbjct: 690 PIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADITASIGNHGAFWMFGSICIV 749
Query: 363 GTAHVLAYLPETKGKSLEEIIK 384
G V+ Y+PET+GKSLE+I +
Sbjct: 750 GLLFVIVYVPETQGKSLEDIER 771
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Anopheles gambiae (taxid: 7165) |
| >sp|B0WC46|TRET1_CULQU Facilitated trehalose transporter Tret1 OS=Culex quinquefasciatus GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (426), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 111/385 (28%), Positives = 204/385 (52%), Gaps = 15/385 (3%)
Query: 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
++ LGRK I+ II WLLI + + + +GR L+G S G+++ +Y+ E++
Sbjct: 121 IEYLGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGETV- 179
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
++RG+L T G+L + G+ + + ++A + A IL+ F+IPE+P
Sbjct: 180 --QPEVRGTLGLLPTAFGNIGILLCFVAGNYMDWSELAFLGATLPVPFLILM-FLIPETP 236
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAY 180
W S+GR A A + LR G ++ +P +G +S E+ ++ + + +K
Sbjct: 237 RWYVSRGRDDRARKALQWLR-GKKAD-VDPELKGIIKSHQDAERHASQSAMLDLLKKTNL 294
Query: 181 KPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFI 240
KPL+I FQQ S +N ++ Y + +G ++ T+I G++ F + + +
Sbjct: 295 KPLLISLGLMFFQQLSGINAVIFYTVQIFQDAG-STIDENLCTIIVGVVNFIATFIATLL 353
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGTYLLFEK--APIVNFEWGFFNLIPLAALVLNLVAS 298
+ G K L S + + ++++ +G + + + + W +PLA+ V+ ++
Sbjct: 354 IDRLGRKMLLYISDIAMIITLMTLGGFFYVKNNGGDVSHIGW-----LPLASFVIFVLGF 408
Query: 299 SVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYG 357
S+GF PIP+LM+GEI P +++G AA +AT + F KT+ + ++G +G F+ +G
Sbjct: 409 SLGFGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFVVTKTFADIIASIGTHGAFWMFG 468
Query: 358 LVAAIGTAHVLAYLPETKGKSLEEI 382
V +G V+ Y+PET+GKSLE+I
Sbjct: 469 SVCVVGLVFVIMYVPETQGKSLEDI 493
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Culex quinquefasciatus (taxid: 7176) |
| >sp|Q17NV8|TRET1_AEDAE Facilitated trehalose transporter Tret1 OS=Aedes aegypti GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (425), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 114/384 (29%), Positives = 203/384 (52%), Gaps = 15/384 (3%)
Query: 4 LGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQN 63
LGRK I+ II WLLI + + + +GR L+G S G+++ +Y+ E++
Sbjct: 413 LGRKNTILATATPFIISWLLIACATHVAMVLVGRALSGFSVGVASLSLPVYLGETV---Q 469
Query: 64 TKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESPAWL 123
++RG+L T G+L + G + + +A + A + +L+ F+IPE+P W
Sbjct: 470 PEVRGTLGLLPTAFGNIGILLCFVAGKYMDWSGLAFLGAAL-PIPFLLLMFLIPETPRWY 528
Query: 124 NSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPL 183
S+GR A A + LR G ++ +P +G +S E+ ++ + + MK KPL
Sbjct: 529 VSRGRDDRARKALQWLR-GKKAD-VDPELKGIIKSHQDAERHASQSAMLDLMKKANLKPL 586
Query: 184 IIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPH 243
+I FQQ S +N ++ Y + +G ++ T+I G++ F + + ++
Sbjct: 587 LISLGLMFFQQLSGINAVIFYTVQIFQDAG-STIDENLCTIIVGVVNFIATFIATMLIDR 645
Query: 244 TGVKPLSAASGMGIALSMLVIGTYLLFEKA--PIVNFEWGFFNLIPLAALVLNLVASSVG 301
G K L S + + ++++ +G + + + + W +PLAA V+ ++ S+G
Sbjct: 646 LGRKMLLYISDVAMIITLMTLGGFFYVKNSGQDVSQVGW-----LPLAAFVIYVLGFSLG 700
Query: 302 FLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVA 360
F PIP+LM+GEI P +++G AA +AT + F KT+ + A+G +G F+ +G +
Sbjct: 701 FGPIPWLMMGEILPGKIRGSAASVATAFNWSCTFIVTKTFADIINAIGTHGTFWMFGSIC 760
Query: 361 AIGTAHVLAYLPETKGKSLEEIIK 384
IG A V+ Y+PET+GKSLE+I +
Sbjct: 761 VIGLAFVIFYVPETQGKSLEDIER 784
|
High-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Aedes aegypti (taxid: 7159) |
| >sp|A9ZSY2|TRET1_APILI Facilitated trehalose transporter Tret1 OS=Apis mellifera ligustica GN=Tret1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 168 bits (425), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 116/389 (29%), Positives = 201/389 (51%), Gaps = 14/389 (3%)
Query: 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
++ +GR+ I+ + + GWL I + + + +GR + G G+++ +Y+ ESI
Sbjct: 107 IEYIGRRNTILSTALPFLAGWLFIALATNVAMILVGRSICGFCVGVASLSLPVYLGESI- 165
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
++RGSL T G+L + G L +R +A + A + IL+ F+IPE+P
Sbjct: 166 --QPEVRGSLGLLPTVFGNSGILMCFTAGMYLAWRNLALLGACIPIIFLILM-FLIPETP 222
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAY 180
W SKG+ +A + + LR G ++ +E + + E+++T E +
Sbjct: 223 RWYISKGKIKEARKSLQWLR-GKTADISEELD-SIQKMHIESERIATEGALIELFRKNHI 280
Query: 181 KPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFI 240
KP+ I FQQFS +N ++ Y + SG ++ T+I GL+ F S + I
Sbjct: 281 KPVFISLGLMFFQQFSGINAVIFYTVQIFKDSG-STVDENLSTIIVGLVNFISTFVAAMI 339
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGTYL-LFEKAPIVNFEWGFFNLIPLAALVLNLVASS 299
+ G K L S + + +++ GT+ + E + F W IPL +L++ ++ S
Sbjct: 340 IDRLGRKMLLYISSILMCITLFTFGTFFYVKELMDVTAFGW-----IPLMSLIVYVIGFS 394
Query: 300 VGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGL 358
GF PIP+LM+GEI P++++G AA +AT + F KT+ L L +G G F+ +G
Sbjct: 395 FGFGPIPWLMMGEILPVKIRGTAASVATAFNWSCTFVVTKTYEDLVLHIGPYGTFWLFGT 454
Query: 359 VAAIGTAHVLAYLPETKGKSLEEIIKGFS 387
+ A+ V+ +PET+G+SLEEI + F+
Sbjct: 455 LVAVAFIFVIICVPETRGRSLEEIERRFA 483
|
Moderate-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Apis mellifera ligustica (taxid: 7469) |
| >sp|Q8MKK4|TRE12_DROME Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila melanogaster GN=Tret1-2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 114/385 (29%), Positives = 198/385 (51%), Gaps = 15/385 (3%)
Query: 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
++ LGR+ I+ + I+ LLI ++ + + GRFLTG G+++ +Y+ E++
Sbjct: 93 IEYLGRRSTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVYLGETL- 151
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
++RG+L T G+L Y GS + + +A + A IL+ IIPE+P
Sbjct: 152 --QPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILM-IIIPETP 208
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAY 180
W ++G+ A A K LR G ++ EP + +S A ++ +T N E K
Sbjct: 209 RWFVNRGQEERARKALKWLR-GKEAD-VEPELKELMQSQADADRQATQNTCLELFKRNNL 266
Query: 181 KPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFI 240
KPL I FQQFS +N ++ Y + +G + + ++G + FA+ + I +
Sbjct: 267 KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAGSTIDSNLSTIIVGVVNFFATFMGI-IL 325
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGT--YLLFEKAPIVNFEWGFFNLIPLAALVLNLVAS 298
+ G K L S + + +++ ++G Y + + W +PL V+ ++
Sbjct: 326 IDRLGRKILLYVSDIAMIVTLSILGGFFYCKAHGPDVSHLGW-----LPLTCFVIYILGF 380
Query: 299 SVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYG 357
S+GF PIP+LM+GEI P +++G AA + T + F KT+ L +A+G +G F+ +G
Sbjct: 381 SLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFG 440
Query: 358 LVAAIGTAHVLAYLPETKGKSLEEI 382
+ +G V+ ++PET+GKSLEEI
Sbjct: 441 AICIVGLFFVIIFVPETRGKSLEEI 465
|
Fails to transport trehalose. Drosophila melanogaster (taxid: 7227) |
| >sp|B4P624|TRET1_DROYA Facilitated trehalose transporter Tret1 OS=Drosophila yakuba GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 166 bits (421), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 117/384 (30%), Positives = 197/384 (51%), Gaps = 15/384 (3%)
Query: 4 LGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQN 63
+GR+ I+ + I+ LLI ++ + + GRFL G G+++ +Y+ E++ +
Sbjct: 463 MGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLGETVQPE- 521
Query: 64 TKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESPAWL 123
+RG+L T G+L + GS + + +A + A IL+ F+IPE+P W
Sbjct: 522 --VRGTLGLLPTAFGNIGILVCFVAGSFMNWSMLAFLGAALPVPFLILM-FLIPETPRWY 578
Query: 124 NSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPL 183
S+GR A A LR G ++ EP +G S A ++ +T N E +K KPL
Sbjct: 579 VSRGREERARKALTWLR-GKEAD-VEPELKGLMRSQADADRQATQNTMLELLKRNNLKPL 636
Query: 184 IIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPH 243
I FQQFS +N ++ Y + +G ++ T+I G++ F + ++
Sbjct: 637 SISLGLMFFQQFSGINAVIFYTVQIFKDAG-STIDGNVCTIIVGVVNFVATFIGILLIDR 695
Query: 244 TGVKPLSAASGMGIALSMLVIGT--YLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVG 301
G K L AS + + L++ V+G Y + + W +PL V+ ++ SVG
Sbjct: 696 AGRKILLYASDIAMVLTLFVLGGFFYCKAHGPDVSHLGW-----LPLTCFVVYILGFSVG 750
Query: 302 FLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVA 360
F PIP+LM+GEI P +++G AA +AT + F KT+ L +LG +G F+ +G +
Sbjct: 751 FGPIPWLMMGEILPAKIRGAAASVATSFNWTCTFVVTKTFQDLVGSLGAHGAFWLFGAIC 810
Query: 361 AIGTAHVLAYLPETKGKSLEEIIK 384
+G V+ Y+PET+GK+LE+I +
Sbjct: 811 FVGLFFVILYVPETQGKTLEDIER 834
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila yakuba (taxid: 7245) |
| >sp|B3NSE1|TRET1_DROER Facilitated trehalose transporter Tret1 OS=Drosophila erecta GN=Tret1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 120/385 (31%), Positives = 198/385 (51%), Gaps = 17/385 (4%)
Query: 4 LGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQN 63
LGR+ I+ + I+ LLI ++ + + GRFL G G+++ +Y+ E++ +
Sbjct: 463 LGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLGETVQPE- 521
Query: 64 TKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESPAWL 123
+RG+L T G+L + GS + + +A + A IL+ F+IPE+P W
Sbjct: 522 --VRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILM-FLIPETPRWF 578
Query: 124 NSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPL 183
S+GR A A LR G ++ EP +G S A ++ +T N E +K KPL
Sbjct: 579 VSRGREERARKALSWLR-GKEAD-VEPELKGLMRSQADADRQATQNTMLELLKRNNLKPL 636
Query: 184 IIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIF-ASVISISFILP 242
I FQQ S +N ++ Y + +G ++ T+I G++ F A+ I I I
Sbjct: 637 SISLGLMFFQQLSGINAVIFYTVQIFKDAG-STIDGNICTIIVGVVNFLATFIGIVLI-D 694
Query: 243 HTGVKPLSAASGMGIALSMLVIGT--YLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSV 300
G K L S + + L++ V+G Y + N W +PL V+ ++ S+
Sbjct: 695 RAGRKILLYVSNIAMILTLFVLGGFFYCKAHGPDVSNLGW-----LPLTCFVIYILGFSL 749
Query: 301 GFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLV 359
GF PIP+LM+GEI P +++G AA +AT + F KT+ L +A+G +G F+ +G +
Sbjct: 750 GFGPIPWLMMGEILPAKIRGSAASVATAFNWSCTFVVTKTFQDLTVAMGAHGAFWLFGAI 809
Query: 360 AAIGTAHVLAYLPETKGKSLEEIIK 384
+G V+ Y+PET+GK+LE+I +
Sbjct: 810 CFVGLFFVIIYVPETQGKTLEDIER 834
|
Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph. Drosophila erecta (taxid: 7220) |
| >sp|B4QBN3|TRE12_DROSI Facilitated trehalose transporter Tret1-2 homolog OS=Drosophila simulans GN=Tret1-2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 115/385 (29%), Positives = 196/385 (50%), Gaps = 15/385 (3%)
Query: 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
++ LGR+ I+ + I+ LLI ++ + + GRFLTG G+++ +Y+ E++
Sbjct: 93 IEYLGRRTTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVYLGETL- 151
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
++RG+L T G+L Y GS + + +A + A IL+ IIPE+P
Sbjct: 152 --QPEVRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILM-IIIPETP 208
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAY 180
W ++G+ A A K LR G ++ EP + +S A+ + + N E K
Sbjct: 209 RWFVNRGQEERARKALKWLR-GKEAD-VEPELKDLMQSQAEADSQARRNTCLELFKRINL 266
Query: 181 KPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFI 240
KPL I FQQFS +N ++ Y + +G ++ T+I G++ F + +
Sbjct: 267 KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAG-STIDSNLCTIIVGIVNFFATFMGILL 325
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGT--YLLFEKAPIVNFEWGFFNLIPLAALVLNLVAS 298
+ G K L S + + L++ ++G Y + + W +PL V+ ++
Sbjct: 326 IDRLGRKILLYISDIAMILTLSILGGFFYCKAHGPDVSHLGW-----LPLTCFVIYILGF 380
Query: 299 SVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYG 357
S+GF PIP+LM+GEI P +++G AA + T + F KT+ L +A+G +G F+ +G
Sbjct: 381 SLGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFG 440
Query: 358 LVAAIGTAHVLAYLPETKGKSLEEI 382
+V +G V+ +PET+GKSLEEI
Sbjct: 441 VVCIVGLFFVIICVPETRGKSLEEI 465
|
Fails to transport trehalose. Drosophila simulans (taxid: 7240) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 388 | ||||||
| 291461563 | 486 | sugar transporter 2 [Nilaparvata lugens] | 0.994 | 0.794 | 0.440 | 4e-82 | |
| 242013039 | 490 | conserved hypothetical protein [Pediculu | 0.984 | 0.779 | 0.364 | 3e-64 | |
| 193608383 | 496 | PREDICTED: facilitated trehalose transpo | 0.976 | 0.764 | 0.348 | 7e-61 | |
| 383854736 | 506 | PREDICTED: facilitated trehalose transpo | 0.969 | 0.743 | 0.339 | 2e-57 | |
| 170028144 | 471 | sugar transporter [Culex quinquefasciatu | 0.976 | 0.804 | 0.335 | 3e-55 | |
| 157133171 | 423 | sugar transporter [Aedes aegypti] gi|108 | 0.971 | 0.891 | 0.330 | 1e-54 | |
| 345495221 | 523 | PREDICTED: facilitated trehalose transpo | 0.969 | 0.718 | 0.326 | 3e-54 | |
| 350397883 | 509 | PREDICTED: facilitated trehalose transpo | 0.966 | 0.736 | 0.337 | 8e-54 | |
| 193613328 | 541 | PREDICTED: facilitated trehalose transpo | 0.966 | 0.693 | 0.327 | 1e-53 | |
| 307197089 | 495 | Sugar transporter ERD6-like 8 [Harpegnat | 0.961 | 0.753 | 0.331 | 1e-52 |
| >gi|291461563|dbj|BAI83416.1| sugar transporter 2 [Nilaparvata lugens] | Back alignment and taxonomy information |
|---|
Score = 311 bits (796), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 173/393 (44%), Positives = 251/393 (63%), Gaps = 7/393 (1%)
Query: 1 MDKLGRKPAIILIGIVGIIGWLLITY---SLTITNLFIGRFLTGVSEGLSASPATIYIAE 57
M++ GR+ A+ + +VG++GWL++++ T L++GR LTGVS GL+ PA Y E
Sbjct: 88 MERFGRRVALHTVSVVGLLGWLMLSFRPTDPTTVKLYLGRMLTGVSVGLAMLPAATYANE 147
Query: 58 SIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIP 117
S+ ++ + S+ TW+T A FG+L Y G+++ Y +VA +AAI S + + +P
Sbjct: 148 SLK-KDAVEQTSIVTWSTVALCFGILVTYICGAMIPYYQVAGVAAIISVFSLLAVAIFVP 206
Query: 118 ESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTT--NIFKEFM 175
ESPAWL +KGR+GDAEW K+L + T+P + A E T+ I KE
Sbjct: 207 ESPAWLQTKGRQGDAEWVQKQLGASQAGSSTDPEQPSPSAPPAPAEPQPTSLKEIMKEIE 266
Query: 176 KPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVI 235
KPE +KPL+I+S FF FQQFS V V +AYM D VRS+G LNPYF+TV+ G+IIF + I
Sbjct: 267 KPEVHKPLLIMSAFFFFQQFSGVFVFIAYMVDIVRSAGVIALNPYFVTVLSGVIIFGASI 326
Query: 236 SISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNL 295
SF+ P TGV+ L+ SG G+ ++ML I YL E+ + IPL A+++N+
Sbjct: 327 VASFVYPKTGVRALATLSGAGMCITMLFIAVYLSLRPYFFTRAEYYYLRWIPLIAILVNI 386
Query: 296 VASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFF 354
+S+ GFL +P+ MLGE+FP+ VKG A +AT L YIF F A+ ++P L L++G +G+F+
Sbjct: 387 TSSTFGFLILPWSMLGEVFPLNVKGTAGAIATTLGYIFCFIAIISFPHLWLSMGSDGVFY 446
Query: 355 FYGLVAAIGTAHVLAYLPETKGKSLEEIIKGFS 387
FYG A +GT V +LPET GK+LEE++ GFS
Sbjct: 447 FYGFSALLGTLFVYYFLPETHGKTLEEVLDGFS 479
|
Source: Nilaparvata lugens Species: Nilaparvata lugens Genus: Nilaparvata Family: Delphacidae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242013039|ref|XP_002427227.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212511535|gb|EEB14489.1| conserved hypothetical protein [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 252 bits (643), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 147/403 (36%), Positives = 228/403 (56%), Gaps = 21/403 (5%)
Query: 1 MDKLGRKPAIILIGIVGIIGWLLITYS---LTITNLFIGRFLTGVSEGLSASPATIYIAE 57
+++ GRK ++L+ I+GWLLI ++ T+ ++ GRF TG++ G+S+ P T++ AE
Sbjct: 83 LEQFGRKSTLLLVNFPCILGWLLIAFAQGDYTLIMIYAGRFFTGLATGMSSVPVTVFSAE 142
Query: 58 SIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLLR--YRKVAAMAAIFSALGTILITFI 115
+ + LRG TW +++ A G+L +Y +G L + +R +A ++AI + I+I
Sbjct: 143 ---ISSDSLRGMFITWTSSSMALGILLIYILGYLFQDNWRLMAGLSAILPFVSFIMIFAF 199
Query: 116 IPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPT---------SRGDAESGAQGEQMS 166
+ E+P+WL SKG+ AE K LR G N PT S+
Sbjct: 200 LVETPSWLLSKGKLEKAERNFKILR-GVAKNSEMPTVVSNEFEIMSKKYKIDNKDNHSNE 258
Query: 167 TTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIG 226
+I K F + A KP II++LFF FQQFS + V++ Y V SG +PY IT++
Sbjct: 259 KKSILKLFFRKGAIKPFIIMNLFFFFQQFSGIFVVIFYAVQIVVESGVSW-DPYLITILI 317
Query: 227 GLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEW-GFFNL 285
G+ + + +I G +P S SG G+ + M + TYL ++ EW GF +
Sbjct: 318 GICRLLVTVCMGYICKRYGRRPPSIVSGAGMTICMACLATYLFLSDTGQISEEWSGFVDW 377
Query: 286 IPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLH 345
IP +L+L ++ S++GFL +P+ M+GE+FP +V+G AAGL C AYIF F VK + +
Sbjct: 378 IPAVSLILFILTSTIGFLTLPWAMIGEVFPSDVRGFAAGLTVCFAYIFNFIIVKAYSDMR 437
Query: 346 LALGN-GIFFFYGLVAAIGTAHVLAYLPETKGKSLEEIIKGFS 387
AL + G+FFFYG + GT V+ +LPET+GK+L EI + FS
Sbjct: 438 DALSSYGVFFFYGAFSVFGTIFVVLFLPETQGKTLLEIEEYFS 480
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193608383|ref|XP_001943271.1| PREDICTED: facilitated trehalose transporter Tret1-2 homolog isoform 1 [Acyrthosiphon pisum] gi|328708747|ref|XP_003243791.1| PREDICTED: facilitated trehalose transporter Tret1-2 homolog isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 135/387 (34%), Positives = 217/387 (56%), Gaps = 8/387 (2%)
Query: 1 MDKLGRKPAIILIGIVGIIGWLLITYS-LTITNLFIGRFLTGVSEGLSASPATIYIAESI 59
+DKLGRK A+++ + +GWL+++ + + L+ G+ L G+S GLS +PAT+Y AE I
Sbjct: 91 IDKLGRKTALMVTNLPSCLGWLMLSRQPVNLYVLYAGQLLVGMSVGLSTTPATVYAAECI 150
Query: 60 MVQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPES 119
V T LRG + FG+ Y +G+L+ VA +AA S + I +IPES
Sbjct: 151 TVNYTGLRGCFTIMTSIMLNFGMFLTYLLGTLMPAYVVAYVAAFVSFAAFLFIGLLIPES 210
Query: 120 PAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEA 179
P WL +GRRGDAE++ + LR+ P QT D +S A S I +P+
Sbjct: 211 PPWLFGQGRRGDAEFSQRVLRIAQPILQTSRAMSLDGDSAAAVRIRS--RIVDRLAEPDV 268
Query: 180 YKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISF 239
YKP+ I+++F FQQ V+ AYM + G +N Y +T++ G A+++ +S
Sbjct: 269 YKPMAIMTMFLFFQQACGSFVLTAYMIQLLGGLGVT-VNNYVVTLLAGFTNLAAMVVLSM 327
Query: 240 ILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASS 299
+L +G K LS S G A SM+++ +L + N++ + ++LN+ +
Sbjct: 328 LLTRSGFKQLSYVSCAGYAASMVLLAVFLQCYDGG----DAFVTNVVVIGCVLLNMAMNG 383
Query: 300 VGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGIFFFYGLV 359
+G PIPY MLGE+FP +V GVA + C++ +F F A+K++P L + LG G+F YG++
Sbjct: 384 LGLRPIPYAMLGEVFPTDVAGVAGSIVACMSSVFNFVAIKSYPYLRILLGPGVFALYGVL 443
Query: 360 AAIGTAHVLAYLPETKGKSLEEIIKGF 386
A + V +P+T+GK++++I F
Sbjct: 444 ALLTLVFVAVIVPDTRGKTIKQIGDEF 470
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383854736|ref|XP_003702876.1| PREDICTED: facilitated trehalose transporter Tret1-2 homolog [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 229 bits (584), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 132/389 (33%), Positives = 222/389 (57%), Gaps = 13/389 (3%)
Query: 3 KLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQ 62
+ GRK ++++ ++ I+GW++I S + + +GR ++G++ G ++ PAT+Y AE V
Sbjct: 105 RCGRKLSLLITSVLSIVGWIVIYMSGSYKQILVGRIISGLATGSASVPATVYSAE---VA 161
Query: 63 NTKLRGSLATWATTARAFGLLQVYFMGSLLR--YRKVAAMAAIFSALGTILITFIIPESP 120
+ K R ++ TW + A A G+L VY G + +R VA M A+F + +L I+PE+P
Sbjct: 162 SPKWRATMVTWTSIAIAIGVLIVYIFGYAFKDNWRMVALMCALFPLVSAVLTLAIVPETP 221
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAY 180
WL +GR +A K+ G P +++ P E Q Q N+ K +K A
Sbjct: 222 IWLRDRGRLDEALQVLKKFH-GVPKDESPPAHV--YEQLRQRPQKKKQNLLKHLLKRNAM 278
Query: 181 KPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFI 240
P I+ +F FQQFS + V++ Y + + ++G L +PY V+ GL F + ++ +
Sbjct: 279 VPFAIMVSYFFFQQFSGIFVVVYYAVNIIENAGITL-DPYLGAVLIGLTRFVGSVLVACL 337
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSV 300
G + S ASG G+ + M V+ YLL + + G ++P+ +++ + +S++
Sbjct: 338 SGRFGRRIPSIASGAGMTVFMGVLSVYLLIDSTGYAMKDGG---VVPVICVLMYIFSSTL 394
Query: 301 GFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGN-GIFFFYGLV 359
GFL +P+ M+GE++P +VK V GL TC+ YIF VKT+P + +ALG G+F F+ ++
Sbjct: 395 GFLVVPFAMVGEVYPSKVKEVLTGLTTCIGYIFSSVMVKTYPDMEVALGRYGVFMFFTIL 454
Query: 360 AAIGTAHVLAYLPETKGKSLEEIIKGFSS 388
+ +GT V +LPETKGK+L EI+ FS
Sbjct: 455 SFLGTLFVFFFLPETKGKTLAEIVDMFSK 483
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170028144|ref|XP_001841956.1| sugar transporter [Culex quinquefasciatus] gi|167871781|gb|EDS35164.1| sugar transporter [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 222 bits (565), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 132/394 (33%), Positives = 222/394 (56%), Gaps = 15/394 (3%)
Query: 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
MD +GRK A++L I IIGW++I + + ++ GR LTG G+ +PA +Y +E
Sbjct: 50 MDTIGRKKALLLTEIPLIIGWIVIACATNVDMIYAGRVLTGFGSGMVGAPARVYTSE--- 106
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
V LRG L A+T + G+L Y +G+ ++ ++A++A + +L+ F+ PE+P
Sbjct: 107 VTQPHLRGMLCALASTGISLGVLLQYTLGAFTSWKTLSAISASVPVVAFVLMLFM-PETP 165
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTS-RGDAESGAQGEQMSTTNIFKEFMKPEA 179
+L +K + A + +LR + + E T + A+ Q ++++T + + P
Sbjct: 166 NFLVTKNKPDQAMKSLAKLRGSTYNLEREVTQLQTFAQKSNQKKKLTTKETIQALLHPSC 225
Query: 180 YKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISF 239
KP I+SL+F+ QFS VN I Y + R SG ++ T++ GL+ F I +
Sbjct: 226 LKPFGILSLYFMMYQFSGVNTITFYAVEIFRDSG-TTMDKNTCTIMLGLVRFIFTIIAAI 284
Query: 240 ILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKA-----PIVNFEWGFFNLIPLAALVLN 294
+L G +PL+ SG+G ++M+ +GTYL F+K+ P + +F P+A + +
Sbjct: 285 LLRRCGRRPLTFISGIGCGVTMIGLGTYLYFKKSWEEADPPIEPTATWF---PVACIFIF 341
Query: 295 LVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTL-HLALGNGIF 353
+ ++GFL +P++M+GE++PM+V+G+ G TC+A+ F VKT+P L HL +G F
Sbjct: 342 TITCTLGFLVVPWVMIGELYPMKVRGIVGGFTTCMAHTCVFIVVKTYPVLAHLLERHGAF 401
Query: 354 FFYGLVAAIGTAHVLAYLPETKGKSLEEIIKGFS 387
YG ++ +GT LPETKGK+L+EI FS
Sbjct: 402 ILYGCISFVGTVFFYLCLPETKGKTLQEIEDYFS 435
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|157133171|ref|XP_001662783.1| sugar transporter [Aedes aegypti] gi|108870926|gb|EAT35151.1| AAEL012655-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 219 bits (559), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 131/396 (33%), Positives = 221/396 (55%), Gaps = 19/396 (4%)
Query: 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
MD GRK A+++ I IIGW++I + + ++ GR LTG G+ +PA +Y +E
Sbjct: 1 MDNFGRKKALLITEIPMIIGWIVIACATNVEMIYAGRVLTGFGSGMIGAPARVYTSE--- 57
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
V LRG L A+T + G+L Y +G++ ++ ++A++A L L+ ++PESP
Sbjct: 58 VTQPHLRGMLCALASTGISLGVLFQYTLGAVTTWKTLSAISACLPVLAFALM-LLMPESP 116
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGD--AESGAQGEQMSTTNIFKEFMKPE 178
+L SK + A + +LR G N + ++ A+ Q ++++T + + P
Sbjct: 117 NYLVSKNKPDQALKSLAKLR-GSTYNLEKEVNQLQSFAQKSNQKKKLTTKETIQALLHPS 175
Query: 179 AYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISIS 238
KP I++L+F+ QFS VN I Y + + SG ++ Y T++ G++ F I +
Sbjct: 176 CLKPFGILTLYFMMYQFSGVNTITFYAVEIFQDSG-TTMDKYTCTIMLGVVRFIFTILAA 234
Query: 239 FILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKA------PIVNFEWGFFNLIPLAALV 292
+L G +PL+ SG+G ++M+ +GTYL +++ PI F P+A +
Sbjct: 235 ILLRRCGRRPLTFISGIGCGVTMIGLGTYLYYKRTWEMAVPPIAPTATWF----PVACIF 290
Query: 293 LNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTL-HLALGNG 351
+ + ++GFL +P++M+GE++PM+V+G+ G TC+A+ F F VKT+P L HL +G
Sbjct: 291 VFTITCTLGFLVVPWVMIGELYPMKVRGIVGGFTTCMAHTFVFIVVKTYPFLAHLLERHG 350
Query: 352 IFFFYGLVAAIGTAHVLAYLPETKGKSLEEIIKGFS 387
F YG ++ +GT LPETKGK+L+EI FS
Sbjct: 351 AFILYGCISFLGTVFFYLCLPETKGKTLQEIEDYFS 386
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345495221|ref|XP_001604742.2| PREDICTED: facilitated trehalose transporter Tret1-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 218 bits (556), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 127/389 (32%), Positives = 222/389 (57%), Gaps = 13/389 (3%)
Query: 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
MD LGRK ++I+ I ++GW+LI Y+ + ++ GRF TG+ G+ +PA +Y +E
Sbjct: 117 MDVLGRKYSLIVTEIPALLGWILIFYASDVRMIYAGRFFTGLGSGMVGAPARVYTSE--- 173
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
V LRG+L A+ + G+L Y +G++L ++ VA ++AI A +L+ F+ PE+P
Sbjct: 174 VTQPHLRGTLTAIASVGVSTGVLVEYTLGAVLNWKTVAGISAIVPAAAVVLM-FLFPETP 232
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMS-TTNIFKEFMKPEA 179
++L S ++ +A + ++ R E + + + ++++ I K ++P A
Sbjct: 233 SYLISVNKQQEARESLQKFRSTSYDLNEEMDTLVNFSNKNNLKRLTGLREILKALVQPNA 292
Query: 180 YKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISF 239
KP ++ L+FL Q++ N + Y D + SG L N Y + V+ G++ AS I+
Sbjct: 293 LKPFALLFLYFLIYQWTGTNAVTFYAVDIIADSGIKL-NKYLVAVLLGVVRLASTIAACI 351
Query: 240 ILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASS 299
G +P++ S +G ++ML G+Y+ F K + N+ W IP+ ++ +A +
Sbjct: 352 ACRRFGRRPMTFISSIGCGVAMLSFGSYVSF-KDQLSNYSW-----IPVVCIMGYTIACT 405
Query: 300 VGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGL 358
+GFL IP++M+GEI+P++++G+A GL T + F F VKT+P L +L G++F YG
Sbjct: 406 LGFLVIPWIMIGEIYPVQIRGLAGGLTTMSTHFFVFTVVKTYPMLVSSLSQQGVYFLYGT 465
Query: 359 VAAIGTAHVLAYLPETKGKSLEEIIKGFS 387
++ +GT + LPETK K+L+EI FS
Sbjct: 466 ISIVGTIYFYICLPETKNKTLQEIEDYFS 494
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350397883|ref|XP_003485020.1| PREDICTED: facilitated trehalose transporter Tret1-2 homolog [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 217 bits (552), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 131/388 (33%), Positives = 215/388 (55%), Gaps = 13/388 (3%)
Query: 3 KLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQ 62
+ GRK ++++ IV I+GWL+I + T + +GR ++G++ G+++ PAT+Y AE V
Sbjct: 105 RRGRKLSLLITSIVSIVGWLVIYLAGTYEQILVGRIISGIATGMASVPATVYSAE---VS 161
Query: 63 NTKLRGSLATWATTARAFGLLQVYFMGSLLR--YRKVAAMAAIFSALGTILITFIIPESP 120
+ K R + TW + + A G+L VY G + + +R VA M A+F + T+L ++ E+P
Sbjct: 162 SPKWRSIMITWTSVSIAIGVLVVYIFGYIFKDDWRMVALMCALFPLVSTVLTLAVVLETP 221
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAY 180
WL +GR +A K+ R G P + P E Q N K +K A
Sbjct: 222 IWLRDRGRLDEALQVLKKFR-GIPKDVPPPPQL--YEELKPRPQRKKQNFMKHMLKRNAM 278
Query: 181 KPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFI 240
P I+ +F FQQFS + +I+ Y D ++S+G + +P V+ GL + +S +
Sbjct: 279 VPFAILLGYFFFQQFSGLFIIVYYAVDIIQSAGVTI-DPNLGAVLIGLTRLVGTLLVSCM 337
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSV 300
G + S SG + + M V+ YLL + + LIP+ +++ + S++
Sbjct: 338 SEKLGRRKPSIVSGSAMTIFMGVLSVYLLLKDK---GYSINDGGLIPVICILMYIFGSTL 394
Query: 301 GFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLV 359
GFL IP+ M+GE++P +VK +GL TC+ YIF VKT+P + +A+G +G+F F+ ++
Sbjct: 395 GFLVIPFAMVGEVYPTKVKEALSGLTTCINYIFSSITVKTYPDMEVAMGRHGVFIFFTVL 454
Query: 360 AAIGTAHVLAYLPETKGKSLEEIIKGFS 387
+ +GT V +LPETKGK+L EI FS
Sbjct: 455 SFLGTLFVTFFLPETKGKTLSEIEDMFS 482
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193613328|ref|XP_001949920.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 216 bits (551), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 129/394 (32%), Positives = 215/394 (54%), Gaps = 19/394 (4%)
Query: 2 DKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMV 61
D LGRK +I + + I+GWL++ + T+ +++GRFL G+S G+ SP+ +Y +E V
Sbjct: 114 DLLGRKKTLIALQLPAIVGWLMVGSATTVQWIYVGRFLVGLSSGMVGSPSRVYTSE---V 170
Query: 62 QNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESPA 121
LRG L+ +A+ + G++ Y GS+L + +A A A+ +L+ F IPESP+
Sbjct: 171 SQPHLRGMLSAFASVGTSLGVMLEYLFGSVLDWDTLALFNATMPAIA-LLLAFFIPESPS 229
Query: 122 WL-NSKGRRGDAEWAAKRLRLGPPSNQTEPT-----SRGDAESGAQGEQMSTTNIFKEFM 175
WL +SK + +R+R TE SR D ES + E++ +
Sbjct: 230 WLISSKNDENKCRASLRRVRDSKCDVDTEVNDLLMFSRAD-ESTSFKEKV------RLIC 282
Query: 176 KPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVI 235
+P AYKP +I+S++FL QFS +NV+ Y D +R SG ++ Y TV+ G+I +
Sbjct: 283 RPTAYKPFVIVSIYFLLSQFSGLNVVTFYAVDVIRDSG-STIDKYVATVVLGIIRLVFTV 341
Query: 236 SISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNL 295
++ G KPLS S +G +SML Y+ A + P+ +L +
Sbjct: 342 LGCMMMWRLGRKPLSYISSVGCGISMLCFAGYMYQNVAWKAAGQPALATWFPIMSLFVFY 401
Query: 296 VASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFF 354
S++G+L +P++M+GE+FP +++G+ G+ATC+ + F ++T+P L +G +G F
Sbjct: 402 ACSTIGYLIVPWVMIGEVFPRQIRGMLGGVATCVGHFSIFIVLQTYPLLQELVGKSGTFA 461
Query: 355 FYGLVAAIGTAHVLAYLPETKGKSLEEIIKGFSS 388
YG V+ + T + PETK K+L+EI + F +
Sbjct: 462 VYGAVSILSTIFFYYFCPETKNKTLQEIEESFCN 495
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307197089|gb|EFN78457.1| Sugar transporter ERD6-like 8 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 213 bits (542), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 130/392 (33%), Positives = 211/392 (53%), Gaps = 19/392 (4%)
Query: 3 KLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQ 62
+ GR+ ++++ ++ + GW+ I S + GR ++GV+ G+++ P T+Y+AE +
Sbjct: 90 RRGRRISLLVTSLLSMAGWVTIYMSNNYEQIVAGRVISGVATGMASVPTTVYVAE---IA 146
Query: 63 NTKLRGSLATWATTARAFGLLQVYFMGSLLR--YRKVAAMAAIFSALGTILITFIIPESP 120
K RG++ TW + + A G+L VY G + + +R V+ M A+F L L +IPESP
Sbjct: 147 GPKWRGTMVTWTSISIALGVLIVYVFGYVFKDNWRMVSLMCALFPLLSIALTLLVIPESP 206
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAE---SGAQGEQMSTTNIFKEFMKP 177
WL + R DA K+ R G P + P AE Q N+ K MK
Sbjct: 207 LWLRDQNRPDDALKILKKFR-GVPKDDAAP-----AELMFELKPRPQKKKQNLLKHLMKR 260
Query: 178 EAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISI 237
A P I+ +F FQQFS + V++ Y D + SSG L +PY V+ G + +
Sbjct: 261 NAIVPFAIMLSYFFFQQFSGLFVVIYYAVDIIVSSGVKL-DPYLGAVLIGFTRLVGSLLV 319
Query: 238 SFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVA 297
+ + G + S SG+G+A+ M + YL + ++ +IP ++L + A
Sbjct: 320 AGVSRKYGRRIPSIVSGIGMAIFMGGLSVYLFLKDN---GYDIADGGVIPAVCVLLYIFA 376
Query: 298 SSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFY 356
S++G+L IP+ M+GE+FP +VK + +GL TC+ YIF VKT+P + +G +G+F F+
Sbjct: 377 STLGYLVIPFAMVGEVFPSKVKDILSGLTTCIGYIFSSITVKTYPDMLETMGKHGVFLFF 436
Query: 357 GLVAAIGTAHVLAYLPETKGKSLEEIIKGFSS 388
+V+ +G ++ LPETKGK+L EI FS
Sbjct: 437 AVVSLVGAVFIVLCLPETKGKTLHEIEDMFSK 468
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 388 | ||||||
| UNIPROTKB|A5LGM7 | 504 | Tret1 "Facilitated trehalose t | 0.953 | 0.734 | 0.257 | 4e-35 | |
| UNIPROTKB|B4HNS1 | 488 | Tret1-2 "Facilitated trehalose | 0.956 | 0.760 | 0.265 | 2.2e-34 | |
| UNIPROTKB|B3NSE1 | 856 | Tret1 "Facilitated trehalose t | 0.953 | 0.432 | 0.264 | 2.5e-34 | |
| FB|FBgn0033644 | 488 | Tret1-2 "Trehalose transporter | 0.956 | 0.760 | 0.257 | 1.5e-33 | |
| UNIPROTKB|B4P624 | 856 | Tret1 "Facilitated trehalose t | 0.956 | 0.433 | 0.263 | 3.8e-33 | |
| UNIPROTKB|B4MYA4 | 872 | Tret1 "Facilitated trehalose t | 0.953 | 0.424 | 0.264 | 4e-33 | |
| UNIPROTKB|B4HNS0 | 857 | Tret1-1 "Facilitated trehalose | 0.956 | 0.432 | 0.257 | 4.9e-33 | |
| UNIPROTKB|B4QBN3 | 488 | Tret1-2 "Facilitated trehalose | 0.956 | 0.760 | 0.260 | 5.2e-33 | |
| FB|FBgn0050035 | 857 | Tret1-1 "Trehalose transporter | 0.956 | 0.432 | 0.257 | 6.2e-33 | |
| UNIPROTKB|A9ZSY2 | 502 | Tret1 "Facilitated trehalose t | 0.891 | 0.689 | 0.269 | 1.8e-32 |
| UNIPROTKB|A5LGM7 Tret1 "Facilitated trehalose transporter Tret1" [Polypedilum vanderplanki (taxid:319348)] | Back alignment and assigned GO terms |
|---|
Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
Identities = 99/385 (25%), Positives = 180/385 (46%)
Query: 1 MDKLGRKPAXXXXXXXXXXXXXXXTYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
++ LGRK ++ +I + GR L+G G+++ +Y+ E++
Sbjct: 108 IEYLGRKNTILATAVPFIVAWLLIAFANSIWMVLAGRALSGFCVGIASLSLPVYLGETVQ 167
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
+ +RG+L T G+L + G + + +A + +I + +++T +IPE+P
Sbjct: 168 PE---VRGTLGLLPTAFGNIGILICFVAGKYVNWSGLAFIGSILP-IPFMVLTLLIPETP 223
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAY 180
W ++GR A A + LR G ++ EP +G +S + E+ ++ N + MK
Sbjct: 224 RWFVTRGREERARKALQWLR-GKKAD-VEPELKGIVKSHCEAERHASQNAIFDLMKRSNL 281
Query: 181 KPXXXXXXXXXXXXXXAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLXXXXXXXXXXXX 240
KP +N ++ Y + +G ++ T+I G+
Sbjct: 282 KPLLIALGLMFFQQLSGINAVIFYTVSIFKDAG-STIDENLCTIIVGVVNFGATFFATVL 340
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGTYLLFEKA--PIVNFEWGFFNLIPXXXXXXXXXXX 298
+ G K L S + + +++L +GT+ ++ + + N W +P
Sbjct: 341 IDRLGRKILLYISEVAMVITLLTLGTFFYYKNSGNDVSNIGW-----LPLASFVIYVIGF 395
Query: 299 XXGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGN-GIFFFYG 357
G PIP+LMLGEI P +++G AA +AT + F KT+ + A+GN G F+F+G
Sbjct: 396 SSGVGPIPWLMLGEILPGKIRGSAASVATGFNWTCTFIVTKTFADIVAAIGNHGAFWFFG 455
Query: 358 LVAAIGTAHVLAYLPETKGKSLEEI 382
++ IG V+ ++PET+GKSLEEI
Sbjct: 456 VICLIGLFFVIFFVPETQGKSLEEI 480
|
|
| UNIPROTKB|B4HNS1 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila sechellia (taxid:7238)] | Back alignment and assigned GO terms |
|---|
Score = 373 (136.4 bits), Expect = 2.2e-34, P = 2.2e-34
Identities = 102/384 (26%), Positives = 175/384 (45%)
Query: 1 MDKLGRKPAXXXXXXXXXXXXXXXTYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
++ LGR+ ++ + + GRFLTG G+++ +Y+ E++
Sbjct: 93 IEYLGRRNTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVYLGETLQ 152
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
+ +RG+L T G+L Y GS + + +A + A IL+ IIPE+P
Sbjct: 153 PE---VRGTLGLLPTALGNIGILVCYVAGSFMNWSILAFLGAALPVPFLILM-IIIPETP 208
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAY 180
W ++G+ A A K LR G ++ EP + +S A+ + +T N E K
Sbjct: 209 RWFVNRGQEERARKALKWLR-GKEAD-VEPELKDLMQSQAEADSQATRNTCLELFKRINL 266
Query: 181 KPXXXXXXXXXXXXXXAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLXXXXXXXXXXXX 240
KP +N ++ Y + +G ++ T+I G+
Sbjct: 267 KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAG-STIDSNLCTIIVGIVNFFATFMGIIL 325
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGTYLLFEK-APIVNFEWGFFNLIPXXXXXXXXXXXX 299
+ G K L S + + L++ ++G + + P V+ G+ +P
Sbjct: 326 IDRLGRKILLYVSDIAMILTLSILGGFFYCKAHGPDVS-HLGW---LPLSCFVIYILGFS 381
Query: 300 XGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGL 358
GF PIP+LM+GEI P +++G AA + T + F KT+ L +A+G +G F+ +G+
Sbjct: 382 LGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGPHGAFWLFGV 441
Query: 359 VAAIGTAHVLAYLPETKGKSLEEI 382
V +G V+ Y+PET+GKSLEEI
Sbjct: 442 VCIVGLFFVIIYVPETRGKSLEEI 465
|
|
| UNIPROTKB|B3NSE1 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila erecta (taxid:7220)] | Back alignment and assigned GO terms |
|---|
Score = 382 (139.5 bits), Expect = 2.5e-34, P = 2.5e-34
Identities = 102/385 (26%), Positives = 174/385 (45%)
Query: 1 MDKLGRKPAXXXXXXXXXXXXXXXTYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
++ LGR+ ++ + + GRFL G G+++ +Y+ E++
Sbjct: 460 IEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLGETVQ 519
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
+ +RG+L T G+L + GS + + +A + A IL+ F+IPE+P
Sbjct: 520 PE---VRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILM-FLIPETP 575
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAY 180
W S+GR A A LR G ++ EP +G S A ++ +T N E +K
Sbjct: 576 RWFVSRGREERARKALSWLR-GKEAD-VEPELKGLMRSQADADRQATQNTMLELLKRNNL 633
Query: 181 KPXXXXXXXXXXXXXXAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLXXXXXXXXXXXX 240
KP +N ++ Y + +G ++ T+I G+
Sbjct: 634 KPLSISLGLMFFQQLSGINAVIFYTVQIFKDAG-STIDGNICTIIVGVVNFLATFIGIVL 692
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGTYLLFEK-APIV-NFEWGFFNLIPXXXXXXXXXXX 298
+ G K L S + + L++ V+G + + P V N W +P
Sbjct: 693 IDRAGRKILLYVSNIAMILTLFVLGGFFYCKAHGPDVSNLGW-----LPLTCFVIYILGF 747
Query: 299 XXGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYG 357
GF PIP+LM+GEI P +++G AA +AT + F KT+ L +A+G +G F+ +G
Sbjct: 748 SLGFGPIPWLMMGEILPAKIRGSAASVATAFNWSCTFVVTKTFQDLTVAMGAHGAFWLFG 807
Query: 358 LVAAIGTAHVLAYLPETKGKSLEEI 382
+ +G V+ Y+PET+GK+LE+I
Sbjct: 808 AICFVGLFFVIIYVPETQGKTLEDI 832
|
|
| FB|FBgn0033644 Tret1-2 "Trehalose transporter 1-2" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 99/384 (25%), Positives = 174/384 (45%)
Query: 1 MDKLGRKPAXXXXXXXXXXXXXXXTYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
++ LGR+ ++ + + GRFLTG G+++ +Y+ E++
Sbjct: 93 IEYLGRRSTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVYLGETLQ 152
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
+ +RG+L T G+L Y GS + + +A + A IL+ IIPE+P
Sbjct: 153 PE---VRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILM-IIIPETP 208
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAY 180
W ++G+ A A K LR G ++ EP + +S A ++ +T N E K
Sbjct: 209 RWFVNRGQEERARKALKWLR-GKEAD-VEPELKELMQSQADADRQATQNTCLELFKRNNL 266
Query: 181 KPXXXXXXXXXXXXXXAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLXXXXXXXXXXXX 240
KP +N ++ Y + +G ++ T+I G+
Sbjct: 267 KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAG-STIDSNLSTIIVGVVNFFATFMGIIL 325
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGTYLLFEK-APIVNFEWGFFNLIPXXXXXXXXXXXX 299
+ G K L S + + +++ ++G + + P V+ G+ +P
Sbjct: 326 IDRLGRKILLYVSDIAMIVTLSILGGFFYCKAHGPDVS-HLGW---LPLTCFVIYILGFS 381
Query: 300 XGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGL 358
GF PIP+LM+GEI P +++G AA + T + F KT+ L +A+G +G F+ +G
Sbjct: 382 LGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGA 441
Query: 359 VAAIGTAHVLAYLPETKGKSLEEI 382
+ +G V+ ++PET+GKSLEEI
Sbjct: 442 ICIVGLFFVIIFVPETRGKSLEEI 465
|
|
| UNIPROTKB|B4P624 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila yakuba (taxid:7245)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 3.8e-33, P = 3.8e-33
Identities = 101/384 (26%), Positives = 175/384 (45%)
Query: 1 MDKLGRKPAXXXXXXXXXXXXXXXTYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
++ +GR+ ++ + + GRFL G G+++ +Y+ E++
Sbjct: 460 IEYMGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLGETVQ 519
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
+ +RG+L T G+L + GS + + +A + A IL+ F+IPE+P
Sbjct: 520 PE---VRGTLGLLPTAFGNIGILVCFVAGSFMNWSMLAFLGAALPVPFLILM-FLIPETP 575
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAY 180
W S+GR A A LR G ++ EP +G S A ++ +T N E +K
Sbjct: 576 RWYVSRGREERARKALTWLR-GKEAD-VEPELKGLMRSQADADRQATQNTMLELLKRNNL 633
Query: 181 KPXXXXXXXXXXXXXXAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLXXXXXXXXXXXX 240
KP +N ++ Y + +G ++ T+I G+
Sbjct: 634 KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAG-STIDGNVCTIIVGVVNFVATFIGILL 692
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGTYLLFEK-APIVNFEWGFFNLIPXXXXXXXXXXXX 299
+ G K L AS + + L++ V+G + + P V+ G+ +P
Sbjct: 693 IDRAGRKILLYASDIAMVLTLFVLGGFFYCKAHGPDVS-HLGW---LPLTCFVVYILGFS 748
Query: 300 XGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGL 358
GF PIP+LM+GEI P +++G AA +AT + F KT+ L +LG +G F+ +G
Sbjct: 749 VGFGPIPWLMMGEILPAKIRGAAASVATSFNWTCTFVVTKTFQDLVGSLGAHGAFWLFGA 808
Query: 359 VAAIGTAHVLAYLPETKGKSLEEI 382
+ +G V+ Y+PET+GK+LE+I
Sbjct: 809 ICFVGLFFVILYVPETQGKTLEDI 832
|
|
| UNIPROTKB|B4MYA4 Tret1 "Facilitated trehalose transporter Tret1" [Drosophila willistoni (taxid:7260)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 4.0e-33, P = 4.0e-33
Identities = 102/386 (26%), Positives = 175/386 (45%)
Query: 1 MDKLGRKPAXXXXXXXXXXXXXXXTYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
++ LGR+ ++ IT + +GRFL G G+++ +Y+ E++
Sbjct: 475 IEYLGRRNTILTTAVPFIVSSLLIACAVNITMVLLGRFLAGFCVGIASLSLPVYLGETVQ 534
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
+ +RG+L T G+L + G+ + + +A + A IL+ F+IPE+P
Sbjct: 535 PE---VRGTLGLLPTAFGNIGILLCFVAGTYMDWSMLAFLGAALPVPFLILM-FLIPETP 590
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAY 180
W S+GR A A LR G ++ EP +G S A ++ +T N E +K
Sbjct: 591 RWYVSRGREERARKALSWLR-GKEAD-VEPELKGLLRSQADADRSATQNTMLELLKRNNL 648
Query: 181 KPXXXXXXXXXXXXXXAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLXXXXXXXXXXXX 240
KP +N ++ Y + +G ++ T+I G+
Sbjct: 649 KPLSISLGLMFFQQLSGINAVIFYTVQIFKDAG-STIDGNVCTIIVGIVNFMATFIGIIL 707
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGTYLLF-EKAPI--VNFEWGFFNLIPXXXXXXXXXX 297
+ G K L S + + +++ V+G + +KA I N W +P
Sbjct: 708 IDRAGRKILLYVSNVAMIITLFVLGGFFYCKDKAGIDVSNVGW-----LPLSCFVVYILG 762
Query: 298 XXXGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGN-GIFFFY 356
GF PIP+LM+GEI P +++G AA +AT + F KT+ + +G+ G F+ +
Sbjct: 763 FSLGFGPIPWLMMGEILPAKIRGSAASVATAFNWTCTFVVTKTFQDMLDVIGSYGAFWLF 822
Query: 357 GLVAAIGTAHVLAYLPETKGKSLEEI 382
G + IG V+ Y+PET+GK+LE+I
Sbjct: 823 GAICFIGLFFVIIYVPETQGKTLEDI 848
|
|
| UNIPROTKB|B4HNS0 Tret1-1 "Facilitated trehalose transporter Tret1-1" [Drosophila sechellia (taxid:7238)] | Back alignment and assigned GO terms |
|---|
Score = 370 (135.3 bits), Expect = 4.9e-33, P = 4.9e-33
Identities = 99/384 (25%), Positives = 174/384 (45%)
Query: 1 MDKLGRKPAXXXXXXXXXXXXXXXTYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
++ LGR+ ++ + + GRFL G G+++ +Y+ E++
Sbjct: 461 IEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLGETVQ 520
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
+ +RG+L T G+L + GS + + +A + A IL+ F+IPE+P
Sbjct: 521 PE---VRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILM-FLIPETP 576
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAY 180
W +G A A K LR G ++ EP +G S A ++ ++ N E +K
Sbjct: 577 RWFVGRGLEERARKALKWLR-GKEAD-VEPELKGLMRSQADADRQASRNTMLELLKLNNL 634
Query: 181 KPXXXXXXXXXXXXXXAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLXXXXXXXXXXXX 240
KP +N ++ Y + +G ++ T+I G+
Sbjct: 635 KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAG-STIDGNLCTIIVGIVNFLATFIGIVL 693
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGTYLLFE-KAPIVNFEWGFFNLIPXXXXXXXXXXXX 299
+ G K L S + + L++ V+G + + P V+ G+ +P
Sbjct: 694 IDRAGRKILLYVSDIAMVLTLFVLGGFFYCKANGPDVS-HLGW---LPLTCFVIYILGFS 749
Query: 300 XGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGL 358
GF PIP+LM+GEI P +++G AA +AT + F KT+ L +A+G +G F+ +G
Sbjct: 750 LGFGPIPWLMMGEILPAKIRGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGA 809
Query: 359 VAAIGTAHVLAYLPETKGKSLEEI 382
+ +G V+ Y+PET+GK+LE+I
Sbjct: 810 ICFVGLFFVIIYVPETQGKTLEDI 833
|
|
| UNIPROTKB|B4QBN3 Tret1-2 "Facilitated trehalose transporter Tret1-2 homolog" [Drosophila simulans (taxid:7240)] | Back alignment and assigned GO terms |
|---|
Score = 360 (131.8 bits), Expect = 5.2e-33, P = 5.2e-33
Identities = 100/384 (26%), Positives = 173/384 (45%)
Query: 1 MDKLGRKPAXXXXXXXXXXXXXXXTYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
++ LGR+ ++ + + GRFLTG G+++ +Y+ E++
Sbjct: 93 IEYLGRRTTILATAVPFIVSSLLIACAVNVIMILCGRFLTGFCVGIASLSLPVYLGETLQ 152
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
+ +RG+L T G+L Y GS + + +A + A IL+ IIPE+P
Sbjct: 153 PE---VRGTLGLLPTALGNIGILVCYVAGSFMNWSMLAFLGAALPVPFLILM-IIIPETP 208
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAY 180
W ++G+ A A K LR G ++ EP + +S A+ + + N E K
Sbjct: 209 RWFVNRGQEERARKALKWLR-GKEAD-VEPELKDLMQSQAEADSQARRNTCLELFKRINL 266
Query: 181 KPXXXXXXXXXXXXXXAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLXXXXXXXXXXXX 240
KP +N ++ Y + +G ++ T+I G+
Sbjct: 267 KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAG-STIDSNLCTIIVGIVNFFATFMGILL 325
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGTYLLFEK-APIVNFEWGFFNLIPXXXXXXXXXXXX 299
+ G K L S + + L++ ++G + + P V+ G+ +P
Sbjct: 326 IDRLGRKILLYISDIAMILTLSILGGFFYCKAHGPDVS-HLGW---LPLTCFVIYILGFS 381
Query: 300 XGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGL 358
GF PIP+LM+GEI P +++G AA + T + F KT+ L +A+G +G F+ +G+
Sbjct: 382 LGFGPIPWLMMGEILPAKIRGPAASVVTAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGV 441
Query: 359 VAAIGTAHVLAYLPETKGKSLEEI 382
V +G V+ +PET+GKSLEEI
Sbjct: 442 VCIVGLFFVIICVPETRGKSLEEI 465
|
|
| FB|FBgn0050035 Tret1-1 "Trehalose transporter 1-1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 369 (135.0 bits), Expect = 6.2e-33, P = 6.2e-33
Identities = 99/384 (25%), Positives = 174/384 (45%)
Query: 1 MDKLGRKPAXXXXXXXXXXXXXXXTYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
++ LGR+ ++ + + GRFL G G+++ +Y+ E++
Sbjct: 461 IEYLGRRNTILATAVPFIVSSLLIACAVNVAMVLCGRFLAGFCVGIASLSLPVYLGETVQ 520
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
+ +RG+L T G+L + GS + + +A + A IL+ F+IPE+P
Sbjct: 521 PE---VRGTLGLLPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILM-FLIPETP 576
Query: 121 AWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAY 180
W +G A A K LR G ++ EP +G S A ++ ++ N E +K
Sbjct: 577 RWFVGRGLEERARKALKWLR-GKEAD-VEPELKGLMRSQADADRQASRNTMLELLKLNNL 634
Query: 181 KPXXXXXXXXXXXXXXAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLXXXXXXXXXXXX 240
KP +N ++ Y + +G ++ T+I G+
Sbjct: 635 KPLSISLGLMFFQQFSGINAVIFYTVQIFKDAG-STIDGNLCTIIVGIVNFLATFIGIVL 693
Query: 241 LPHTGVKPLSAASGMGIALSMLVIGTYLLFEK-APIVNFEWGFFNLIPXXXXXXXXXXXX 299
+ G K L S + + L++ V+G + + P V+ G+ +P
Sbjct: 694 IDRAGRKILLYVSDIAMVLTLFVLGGFFYCKTYGPDVS-HLGW---LPLTCFVIYILGFS 749
Query: 300 XGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGL 358
GF PIP+LM+GEI P +++G AA +AT + F KT+ L +A+G +G F+ +G
Sbjct: 750 LGFGPIPWLMMGEILPAKIRGSAASVATAFNWFCTFVVTKTFQDLTVAMGAHGAFWLFGA 809
Query: 359 VAAIGTAHVLAYLPETKGKSLEEI 382
+ +G V+ Y+PET+GK+LE+I
Sbjct: 810 ICFVGLFFVIIYVPETQGKTLEDI 833
|
|
| UNIPROTKB|A9ZSY2 Tret1 "Facilitated trehalose transporter Tret1" [Apis mellifera ligustica (taxid:7469)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 97/360 (26%), Positives = 165/360 (45%)
Query: 30 ITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAFGLLQVYFMG 89
+ + +GR + G G+++ +Y+ ESI + +RGSL T G+L + G
Sbjct: 136 VAMILVGRSICGFCVGVASLSLPVYLGESIQPE---VRGSLGLLPTVFGNSGILMCFTAG 192
Query: 90 SLLRYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTE 149
L +R +A + A + IL+ F+IPE+P W SKG+ +A + + LR G ++ +E
Sbjct: 193 MYLAWRNLALLGACIPIIFLILM-FLIPETPRWYISKGKIKEARKSLQWLR-GKTADISE 250
Query: 150 PTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPXXXXXXXXXXXXXXAVNVILAYMTDFV 209
+ + E+++T E + KP +N ++ Y
Sbjct: 251 ELD-SIQKMHIESERIATEGALIELFRKNHIKPVFISLGLMFFQQFSGINAVIFYTVQIF 309
Query: 210 RSSGFHLLNPYFITVIGGLXXXXXXXXXXXXLPHTGVKPLSAASGMGIALSMLVIGTYLL 269
+ SG ++ T+I GL + G K L S + + +++ GT+
Sbjct: 310 KDSG-STVDENLSTIIVGLVNFISTFVAAMIIDRLGRKMLLYISSILMCITLFTFGTFFY 368
Query: 270 F-EKAPIVNFEWGFFNLIPXXXXXXXXXXXXXGFLPIPYLMLGEIFPMEVKGVAAGLATC 328
E + F W IP GF PIP+LM+GEI P++++G AA +AT
Sbjct: 369 VKELMDVTAFGW-----IPLMSLIVYVIGFSFGFGPIPWLMMGEILPVKIRGTAASVATA 423
Query: 329 LAYIFGFFAVKTWPTLHLALGN-GIFFFYGLVAAIGTAHVLAYLPETKGKSLEEIIKGFS 387
+ F KT+ L L +G G F+ +G + A+ V+ +PET+G+SLEEI + F+
Sbjct: 424 FNWSCTFVVTKTYEDLVLHIGPYGTFWLFGTLVAVAFIFVIICVPETRGRSLEEIERRFA 483
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 388 | |||
| pfam00083 | 449 | pfam00083, Sugar_tr, Sugar (and other) transporter | 3e-37 | |
| TIGR00879 | 481 | TIGR00879, SP, MFS transporter, sugar porter (SP) | 1e-31 | |
| PRK10077 | 479 | PRK10077, xylE, D-xylose transporter XylE; Provisi | 7e-25 | |
| TIGR00898 | 505 | TIGR00898, 2A0119, cation transport protein | 3e-09 | |
| TIGR00880 | 141 | TIGR00880, 2_A_01_02, Multidrug resistance protein | 0.004 |
| >gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 3e-37
Identities = 93/391 (23%), Positives = 182/391 (46%), Gaps = 24/391 (6%)
Query: 1 MDKLGRKPAIILIGIVGIIGWLLITYS--LTITNLFIGRFLTGVSEGLSASPATIYIAES 58
D+ GRK ++++ ++ +IG LL ++ + L +GR + G+ G + +YI+E
Sbjct: 70 GDRFGRKKSLLIGNVLFVIGALLQGFAKGKSFYMLIVGRVIVGLGVGGISVLVPMYISE- 128
Query: 59 IMVQNTKLRGSLATWATTARAFGLLQVYFMGSLL-------RYRKVAAMAAIFSALGTIL 111
+ KLRG+L + FG+L +G L +R + + + L I
Sbjct: 129 --IAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVPAILLLIG 186
Query: 112 ITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIF 171
+ F+ PESP WL KG+ +A +LR +Q + + +S + + +
Sbjct: 187 LLFL-PESPRWLVLKGKLEEARAVLAKLRGVSDVDQEI---QEEKDSLERSVEAEKASWL 242
Query: 172 KEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIF 231
+ F + L++ + +FQQ + +N I Y + G + +T+I G++ F
Sbjct: 243 ELFRGKTVRQRLLMGVMLQIFQQLTGINAIFYYSPTIFETLGL--SDSLLVTIIVGVVNF 300
Query: 232 ASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAAL 291
F++ G +PL G+A+ LV+G LL ++ + +
Sbjct: 301 VFTFIAIFLVDRFGRRPLLLLGAAGMAICFLVLGVALLGVAKSKGA------GIVAIVFI 354
Query: 292 VLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNG 351
+L + ++G+ P+P++++ E+FP+ V+ A +AT ++ F +P + A+G
Sbjct: 355 LLFIAFFALGWGPVPWVIVSELFPLGVRPKAMAIATAANWLANFLIGFLFPIITGAIGGY 414
Query: 352 IFFFYGLVAAIGTAHVLAYLPETKGKSLEEI 382
+F + + + V ++PETKG++LEEI
Sbjct: 415 VFLVFAGLLVLFILFVFFFVPETKGRTLEEI 445
|
Length = 449 |
| >gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 1e-31
Identities = 100/397 (25%), Positives = 189/397 (47%), Gaps = 25/397 (6%)
Query: 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITN---LFIGRFLTGVSEGLSASPATIYIAE 57
D+ GRK ++++I ++ +IG +L+ + + L +GR L G+ G++++ +Y++E
Sbjct: 95 SDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSE 154
Query: 58 SIMVQNTKLRGSLATWATTARAFGLLQVYFMGSL-------LRYRKVAAMAAIFSALGTI 110
+ LRG+L + A FG+L Y GS L +R + I + L +
Sbjct: 155 ---IAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFL 211
Query: 111 LITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTE----PTSRGDAESGAQGEQMS 166
+ F+ PESP WL KGR +A + RLR ++ + Q S
Sbjct: 212 GLFFL-PESPRWLVGKGRVEEARKSLARLRGTSGEDKELLDELELIDIKRSIEKRSVQPS 270
Query: 167 TTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIG 226
++F + L + + FQQF+ +N I+ Y ++G + + +++I
Sbjct: 271 WGSLFS--STRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIV 328
Query: 227 GLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLI 286
G + FA F++ G +PL G+A+ + V+G A V +
Sbjct: 329 GAVNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILG----ASFVTGSSKSSGNV 384
Query: 287 PLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHL 346
+ ++L + ++G+ P+P++++ EIFP+ ++ +A ++ F +PT+
Sbjct: 385 AIVFILLFIAFFAMGWGPVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLE 444
Query: 347 ALGNG-IFFFYGLVAAIGTAHVLAYLPETKGKSLEEI 382
++G G +F F+G + +G V +LPETKG++LEEI
Sbjct: 445 SIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEEI 481
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481 |
| >gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 7e-25
Identities = 90/414 (21%), Positives = 180/414 (43%), Gaps = 60/414 (14%)
Query: 3 KLGRKPAIILIGIVGIIG--------WLLITYSLTITNLFIG----RFLTGVSEGLSASP 50
+ GR+ ++ + ++ I + + T R + G+ GL++
Sbjct: 81 RFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASML 140
Query: 51 ATIYIAESIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLLR------------YRKVA 98
+ +YIAE + +RG L ++ A FG L VYF+ + +R +
Sbjct: 141 SPMYIAE---IAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMF 197
Query: 99 AMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAES 158
A AI + L +L+ + +PE+P +L S+G++ AE +++ +G + +
Sbjct: 198 ASEAIPALLFLMLL-YFVPETPRYLMSRGKQEQAEGILRKI-MGNTLATQALQ---EIKH 252
Query: 159 GAQGEQMSTTNIFKEFMKPEAYKPLIIIS--LFFLFQQFSAVNVILAYMTDFVRSSGFHL 216
+ + + + +I+ + +FQQF +NV+L Y + ++ G
Sbjct: 253 SLDHGRKTGGKLL-------MFGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAST 305
Query: 217 LNPYFITVIGGLI-IFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPI 275
T+I G+I + +V++I + G KPL +G+A+ M +GT
Sbjct: 306 DIALLQTIIVGVINLTFTVLAI-MTVDKFGRKPLQIIGALGMAIGMFSLGT--------- 355
Query: 276 VNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGF 335
F ++ L +++ + A ++ + P+ +++L EIFP ++G A +A +I +
Sbjct: 356 -AFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANY 414
Query: 336 FAVKTWPTLHLALGNGIFF-------FYGLVAAIGTAHVLAYLPETKGKSLEEI 382
F T+P + F YG + + + ++PETKGK+LEE+
Sbjct: 415 FVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEM 468
|
Length = 479 |
| >gnl|CDD|233176 TIGR00898, 2A0119, cation transport protein | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 3e-09
Identities = 76/391 (19%), Positives = 140/391 (35%), Gaps = 49/391 (12%)
Query: 2 DKLGRKPAIIL-IGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIM 60
D+ GRK ++L + + G L +S T + R L G+ G A + E +
Sbjct: 152 DRFGRKKVLLLSTLVTAVSGVLTA-FSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFL- 209
Query: 61 VQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPESP 120
K R + T + GL+ + + + + +A L+++ +PESP
Sbjct: 210 --PKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESP 267
Query: 121 AWLNSKGRRGDAEWAAKRL----RLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMK 176
WL S+GR +A +R+ P+ + D + F
Sbjct: 268 RWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEKDL-----SSSKKQYSFLDLFRT 322
Query: 177 PEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVIS 236
P L +L + F+ +Y + N Y I GL+ + +
Sbjct: 323 PN----LRKTTLCLMMLWFT---TAFSYYGLVLDLGNLG-GNIYLDLFISGLVELPAKLI 374
Query: 237 ISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLV 296
++ G + AAS + +++L++ + + AL +
Sbjct: 375 TLLLIDRLGRRYTMAASLLLAGVALLLL--LFVPVDLYFLR-----------TALAVLGK 421
Query: 297 ASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYI------FGFFAVKTWPTLHLALGN 350
+ YL E++P V+ + G+ + +A + F + + W L L L
Sbjct: 422 FGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVL-- 479
Query: 351 GIFFFYGLVAAIGTAHVLAYLPETKGKSLEE 381
+G +A + L +LPETKG L E
Sbjct: 480 -----FGGLALLAGILTL-FLPETKGVPLPE 504
|
[Transport and binding proteins, Cations and iron carrying compounds]. Length = 505 |
| >gnl|CDD|233166 TIGR00880, 2_A_01_02, Multidrug resistance protein | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.004
Identities = 27/119 (22%), Positives = 47/119 (39%), Gaps = 1/119 (0%)
Query: 2 DKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMV 61
D+ GRKP +++ + ++ + S IT L I RFL G + IA+
Sbjct: 23 DRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPP 82
Query: 62 QNTKLRGSLATWATT-ARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFIIPES 119
+ + L + G + L +R AI + IL+ F++PE+
Sbjct: 83 EERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141
|
Length = 141 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 388 | |||
| KOG0569|consensus | 485 | 100.0 | ||
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 100.0 | |
| KOG0254|consensus | 513 | 100.0 | ||
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 100.0 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 100.0 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 100.0 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 100.0 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 100.0 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 100.0 | |
| KOG0253|consensus | 528 | 100.0 | ||
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 100.0 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 100.0 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 100.0 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 100.0 | |
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 100.0 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 100.0 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 100.0 | |
| KOG0255|consensus | 521 | 100.0 | ||
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 100.0 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 100.0 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 100.0 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 100.0 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 100.0 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 100.0 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 100.0 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 100.0 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.98 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.98 | |
| KOG0252|consensus | 538 | 99.97 | ||
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.97 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.97 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.97 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.97 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.97 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 99.97 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.97 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.97 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.97 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.96 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.96 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.96 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.96 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.96 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.96 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.96 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.96 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.96 | |
| KOG2532|consensus | 466 | 99.96 | ||
| PRK12382 | 392 | putative transporter; Provisional | 99.96 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.96 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.96 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.96 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.96 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.96 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.96 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.96 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.95 | |
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.95 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.95 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.95 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.95 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.95 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.95 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.95 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.95 | |
| PRK10054 | 395 | putative transporter; Provisional | 99.95 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.95 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.94 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.94 | |
| KOG1330|consensus | 493 | 99.93 | ||
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.93 | |
| KOG2533|consensus | 495 | 99.93 | ||
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.93 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.93 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.93 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.93 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.93 | |
| KOG2504|consensus | 509 | 99.93 | ||
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.93 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.93 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.92 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.92 | |
| KOG2615|consensus | 451 | 99.92 | ||
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 99.92 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.92 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.91 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.91 | |
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 99.9 | |
| KOG3764|consensus | 464 | 99.89 | ||
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.88 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 99.88 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.88 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.87 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.86 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 99.86 | |
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.85 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 99.85 | |
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 99.85 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 99.84 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.84 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.83 | |
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 99.83 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.82 | |
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 99.81 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 99.81 | |
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 99.8 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 99.8 | |
| KOG4686|consensus | 459 | 99.79 | ||
| PRK11462 | 460 | putative transporter; Provisional | 99.77 | |
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 99.76 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 99.76 | |
| PRK09848 | 448 | glucuronide transporter; Provisional | 99.76 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.74 | |
| KOG2563|consensus | 480 | 99.74 | ||
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 99.6 | |
| TIGR02332 | 412 | HpaX 4-hydroxyphenylacetate permease. This protein | 99.56 | |
| TIGR01299 | 742 | synapt_SV2 synaptic vesicle protein SV2. This mode | 99.56 | |
| PRK03545 | 390 | putative arabinose transporter; Provisional | 99.55 | |
| TIGR00710 | 385 | efflux_Bcr_CflA drug resistance transporter, Bcr/C | 99.55 | |
| TIGR00895 | 398 | 2A0115 benzoate transport. | 99.55 | |
| PRK11663 | 434 | regulatory protein UhpC; Provisional | 99.54 | |
| KOG2816|consensus | 463 | 99.54 | ||
| PRK10054 | 395 | putative transporter; Provisional | 99.54 | |
| PRK10213 | 394 | nepI ribonucleoside transporter; Reviewed | 99.54 | |
| PRK10473 | 392 | multidrug efflux system protein MdtL; Provisional | 99.52 | |
| TIGR00891 | 405 | 2A0112 putative sialic acid transporter. | 99.51 | |
| COG2814 | 394 | AraJ Arabinose efflux permease [Carbohydrate trans | 99.51 | |
| PRK11551 | 406 | putative 3-hydroxyphenylpropionic transporter MhpT | 99.51 | |
| TIGR00711 | 485 | efflux_EmrB drug resistance transporter, EmrB/QacA | 99.51 | |
| TIGR00893 | 399 | 2A0114 d-galactonate transporter. | 99.5 | |
| PRK09874 | 408 | drug efflux system protein MdtG; Provisional | 99.5 | |
| PLN00028 | 476 | nitrate transmembrane transporter; Provisional | 99.5 | |
| PF07690 | 352 | MFS_1: Major Facilitator Superfamily; InterPro: IP | 99.49 | |
| KOG3626|consensus | 735 | 99.49 | ||
| KOG2325|consensus | 488 | 99.49 | ||
| COG2271 | 448 | UhpC Sugar phosphate permease [Carbohydrate transp | 99.48 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.48 | |
| PRK14995 | 495 | methyl viologen resistance protein SmvA; Provision | 99.48 | |
| PRK10504 | 471 | putative transporter; Provisional | 99.48 | |
| PRK10091 | 382 | MFS transport protein AraJ; Provisional | 99.48 | |
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 99.46 | |
| PRK15403 | 413 | multidrug efflux system protein MdtM; Provisional | 99.45 | |
| PRK11646 | 400 | multidrug resistance protein MdtH; Provisional | 99.45 | |
| PRK11652 | 394 | emrD multidrug resistance protein D; Provisional | 99.45 | |
| TIGR00900 | 365 | 2A0121 H+ Antiporter protein. | 99.45 | |
| PRK11102 | 377 | bicyclomycin/multidrug efflux system; Provisional | 99.44 | |
| PRK15402 | 406 | multidrug efflux system translocase MdfA; Provisio | 99.44 | |
| PRK12307 | 426 | putative sialic acid transporter; Provisional | 99.44 | |
| PRK03893 | 496 | putative sialic acid transporter; Provisional | 99.43 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 99.43 | |
| TIGR00897 | 402 | 2A0118 polyol permease family. This family of prot | 99.42 | |
| PRK10642 | 490 | proline/glycine betaine transporter; Provisional | 99.42 | |
| PRK10489 | 417 | enterobactin exporter EntS; Provisional | 99.42 | |
| TIGR00881 | 379 | 2A0104 phosphoglycerate transporter family protein | 99.42 | |
| PRK03699 | 394 | putative transporter; Provisional | 99.41 | |
| PRK11273 | 452 | glpT sn-glycerol-3-phosphate transporter; Provisio | 99.41 | |
| PRK15462 | 493 | dipeptide/tripeptide permease D; Provisional | 99.41 | |
| TIGR00903 | 368 | 2A0129 major facilitator 4 family protein. This fa | 99.4 | |
| TIGR00924 | 475 | yjdL_sub1_fam amino acid/peptide transporter (Pept | 99.4 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 99.39 | |
| PRK11043 | 401 | putative transporter; Provisional | 99.39 | |
| PRK15034 | 462 | nitrate/nitrite transport protein NarU; Provisiona | 99.39 | |
| TIGR00712 | 438 | glpT glycerol-3-phosphate transporter. This model | 99.38 | |
| PRK05122 | 399 | major facilitator superfamily transporter; Provisi | 99.37 | |
| PRK12382 | 392 | putative transporter; Provisional | 99.37 | |
| PRK10207 | 489 | dipeptide/tripeptide permease B; Provisional | 99.37 | |
| TIGR00886 | 366 | 2A0108 nitrite extrusion protein (nitrite facilita | 99.37 | |
| PRK11195 | 393 | lysophospholipid transporter LplT; Provisional | 99.36 | |
| PRK03633 | 381 | putative MFS family transporter protein; Provision | 99.34 | |
| TIGR00890 | 377 | 2A0111 Oxalate/Formate Antiporter. | 99.33 | |
| TIGR00892 | 455 | 2A0113 monocarboxylate transporter 1. | 99.33 | |
| PRK09584 | 500 | tppB putative tripeptide transporter permease; Rev | 99.33 | |
| KOG1330|consensus | 493 | 99.33 | ||
| cd06174 | 352 | MFS The Major Facilitator Superfamily (MFS) is a l | 99.32 | |
| TIGR00894 | 465 | 2A0114euk Na(+)-dependent inorganic phosphate cotr | 99.31 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 99.31 | |
| TIGR00887 | 502 | 2A0109 phosphate:H+ symporter. This model represen | 99.31 | |
| TIGR00899 | 375 | 2A0120 sugar efflux transporter. This family of pr | 99.3 | |
| PF05977 | 524 | MFS_3: Transmembrane secretion effector; InterPro: | 99.3 | |
| TIGR00879 | 481 | SP MFS transporter, sugar porter (SP) family. This | 99.29 | |
| PRK09705 | 393 | cynX putative cyanate transporter; Provisional | 99.28 | |
| PRK09556 | 467 | uhpT sugar phosphate antiporter; Reviewed | 99.28 | |
| PRK10077 | 479 | xylE D-xylose transporter XylE; Provisional | 99.27 | |
| COG2223 | 417 | NarK Nitrate/nitrite transporter [Inorganic ion tr | 99.26 | |
| TIGR00885 | 410 | fucP L-fucose:H+ symporter permease. This family d | 99.26 | |
| TIGR00880 | 141 | 2_A_01_02 Multidrug resistance protein. | 99.24 | |
| KOG2615|consensus | 451 | 99.24 | ||
| TIGR01301 | 477 | GPH_sucrose GPH family sucrose/H+ symporter. This | 99.23 | |
| PRK15075 | 434 | citrate-proton symporter; Provisional | 99.22 | |
| TIGR00806 | 511 | rfc RFC reduced folate carrier. Proteins of the RF | 99.21 | |
| PRK10406 | 432 | alpha-ketoglutarate transporter; Provisional | 99.2 | |
| PRK09528 | 420 | lacY galactoside permease; Reviewed | 99.2 | |
| TIGR00805 | 633 | oat sodium-independent organic anion transporter. | 99.18 | |
| KOG3764|consensus | 464 | 99.18 | ||
| TIGR00889 | 418 | 2A0110 nucleoside transporter. This family of prot | 99.17 | |
| PRK10133 | 438 | L-fucose transporter; Provisional | 99.17 | |
| PRK11902 | 402 | ampG muropeptide transporter; Reviewed | 99.16 | |
| PTZ00207 | 591 | hypothetical protein; Provisional | 99.15 | |
| PRK15011 | 393 | sugar efflux transporter B; Provisional | 99.15 | |
| TIGR00898 | 505 | 2A0119 cation transport protein. | 99.12 | |
| PRK06814 | 1140 | acylglycerophosphoethanolamine acyltransferase; Pr | 99.08 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 99.08 | |
| TIGR00882 | 396 | 2A0105 oligosaccharide:H+ symporter. | 99.07 | |
| PRK11010 | 491 | ampG muropeptide transporter; Validated | 99.07 | |
| TIGR00896 | 355 | CynX cyanate transporter. This family of proteins | 99.07 | |
| PRK08633 | 1146 | 2-acyl-glycerophospho-ethanolamine acyltransferase | 99.07 | |
| TIGR00901 | 356 | 2A0125 AmpG-related permease. | 99.06 | |
| PRK09952 | 438 | shikimate transporter; Provisional | 99.05 | |
| PRK11128 | 382 | putative 3-phenylpropionic acid transporter; Provi | 99.05 | |
| TIGR00902 | 382 | 2A0127 phenyl proprionate permease family protein. | 99.03 | |
| PF06609 | 599 | TRI12: Fungal trichothecene efflux pump (TRI12); I | 99.0 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 98.99 | |
| KOG3098|consensus | 461 | 98.96 | ||
| TIGR02718 | 390 | sider_RhtX_FptX siderophore transporter, RhtX/FptX | 98.96 | |
| KOG2532|consensus | 466 | 98.9 | ||
| TIGR00792 | 437 | gph sugar (Glycoside-Pentoside-Hexuronide) transpo | 98.9 | |
| KOG0255|consensus | 521 | 98.89 | ||
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 98.88 | |
| TIGR00883 | 394 | 2A0106 metabolite-proton symporter. This model rep | 98.87 | |
| KOG0569|consensus | 485 | 98.85 | ||
| KOG2504|consensus | 509 | 98.85 | ||
| KOG0254|consensus | 513 | 98.84 | ||
| COG3104 | 498 | PTR2 Dipeptide/tripeptide permease [Amino acid tra | 98.82 | |
| COG0738 | 422 | FucP Fucose permease [Carbohydrate transport and m | 98.79 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 98.78 | |
| PRK09669 | 444 | putative symporter YagG; Provisional | 98.74 | |
| KOG3810|consensus | 433 | 98.68 | ||
| PF01306 | 412 | LacY_symp: LacY proton/sugar symporter; InterPro: | 98.67 | |
| KOG2533|consensus | 495 | 98.62 | ||
| KOG2325|consensus | 488 | 98.6 | ||
| PRK10429 | 473 | melibiose:sodium symporter; Provisional | 98.54 | |
| PF00083 | 451 | Sugar_tr: Sugar (and other) transporter; InterPro: | 98.54 | |
| KOG0637|consensus | 498 | 98.53 | ||
| PF13000 | 544 | Acatn: Acetyl-coenzyme A transporter 1; InterPro: | 98.53 | |
| PRK11462 | 460 | putative transporter; Provisional | 98.53 | |
| KOG2816|consensus | 463 | 98.52 | ||
| KOG3574|consensus | 510 | 98.51 | ||
| PF13347 | 428 | MFS_2: MFS/sugar transport protein | 98.5 | |
| PF05631 | 354 | DUF791: Protein of unknown function (DUF791); Inte | 98.46 | |
| TIGR00788 | 468 | fbt folate/biopterin transporter. The only functio | 98.46 | |
| KOG3762|consensus | 618 | 98.46 | ||
| KOG0252|consensus | 538 | 98.44 | ||
| PF03825 | 400 | Nuc_H_symport: Nucleoside H+ symporter | 98.37 | |
| KOG0253|consensus | 528 | 98.35 | ||
| PRK09848 | 448 | glucuronide transporter; Provisional | 98.28 | |
| PF11700 | 477 | ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0 | 98.2 | |
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 98.18 | |
| COG2211 | 467 | MelB Na+/melibiose symporter and related transport | 98.17 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 98.15 | |
| KOG4332|consensus | 454 | 98.13 | ||
| COG2807 | 395 | CynX Cyanate permease [Inorganic ion transport and | 98.12 | |
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 98.12 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.11 | |
| TIGR00926 | 654 | 2A1704 Peptide:H+ symporter (also transports b-lac | 98.1 | |
| PF12832 | 77 | MFS_1_like: MFS_1 like family | 98.07 | |
| PF06813 | 250 | Nodulin-like: Nodulin-like; InterPro: IPR010658 Th | 97.98 | |
| KOG3762|consensus | 618 | 97.94 | ||
| KOG2563|consensus | 480 | 97.91 | ||
| PF07672 | 267 | MFS_Mycoplasma: Mycoplasma MFS transporter; InterP | 97.88 | |
| PF03209 | 403 | PUCC: PUCC protein; InterPro: IPR004896 This prote | 97.85 | |
| COG2270 | 438 | Permeases of the major facilitator superfamily [Ge | 97.81 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.72 | |
| PF05978 | 156 | UNC-93: Ion channel regulatory protein UNC-93; Int | 97.72 | |
| PF03092 | 433 | BT1: BT1 family; InterPro: IPR004324 Members of th | 97.69 | |
| TIGR01272 | 310 | gluP glucose/galactose transporter. Disruption of | 97.62 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 97.5 | |
| PF03137 | 539 | OATP: Organic Anion Transporter Polypeptide (OATP) | 97.4 | |
| TIGR00769 | 472 | AAA ADP/ATP carrier protein family. These proteins | 97.34 | |
| KOG4686|consensus | 459 | 97.23 | ||
| KOG3626|consensus | 735 | 97.17 | ||
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 97.12 | |
| KOG1479|consensus | 406 | 97.07 | ||
| KOG1237|consensus | 571 | 97.05 | ||
| COG0477 | 338 | ProP Permeases of the major facilitator superfamil | 96.97 | |
| PF06779 | 85 | DUF1228: Protein of unknown function (DUF1228); In | 96.88 | |
| KOG3880|consensus | 409 | 96.87 | ||
| KOG0637|consensus | 498 | 96.78 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 96.58 | |
| PF01733 | 309 | Nucleoside_tran: Nucleoside transporter; InterPro: | 96.47 | |
| PF01770 | 412 | Folate_carrier: Reduced folate carrier; InterPro: | 96.38 | |
| PF00854 | 372 | PTR2: POT family; InterPro: IPR000109 This entry r | 96.17 | |
| PF02487 | 402 | CLN3: CLN3 protein; InterPro: IPR003492 Batten's d | 95.97 | |
| PF06963 | 432 | FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 Thi | 95.93 | |
| KOG3098|consensus | 461 | 95.23 | ||
| KOG4332|consensus | 454 | 95.17 | ||
| PF03219 | 491 | TLC: TLC ATP/ADP transporter; InterPro: IPR004667 | 95.08 | |
| KOG1237|consensus | 571 | 93.74 | ||
| KOG3574|consensus | 510 | 91.95 | ||
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 91.06 | |
| COG3202 | 509 | ATP/ADP translocase [Energy production and convers | 91.0 | |
| KOG3880|consensus | 409 | 90.42 | ||
| KOG1479|consensus | 406 | 87.33 | ||
| PRK03612 | 521 | spermidine synthase; Provisional | 82.46 | |
| KOG2601|consensus | 503 | 80.89 | ||
| TIGR00939 | 437 | 2a57 Equilibrative Nucleoside Transporter (ENT). | 80.68 | |
| KOG3097|consensus | 390 | 80.24 |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-46 Score=329.64 Aligned_cols=376 Identities=26% Similarity=0.420 Sum_probs=329.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYS---LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTA 77 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~ 77 (388)
+||+|||..+.++.++..++.++..++ +++.+++++|++.|+..|......+.|+.| ..|++.||......+.+
T Consensus 84 a~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~~e~li~GR~i~Gl~~gl~~~~~pmyl~E---~sP~~~RG~~g~~~~~~ 160 (485)
T KOG0569|consen 84 ADRFGRKNALLLSNLLAVLAALLMGLSKSAPSFEMLILGRLIVGLACGLSTGLVPMYLTE---ISPKNLRGALGTLLQIG 160 (485)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhHHHHHHHHHHHhh---cChhhhccHHHHHHHHH
Confidence 599999999999999998888877766 889999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhHH------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhh-cCChhhHHHHHHHhcCCCCCCCCCC
Q psy13784 78 RAFGLLQVYFMGSLL------RYRKVAAMAAIFSALGTILITFIIPESPAWLNS-KGRRGDAEWAAKRLRLGPPSNQTEP 150 (388)
Q Consensus 78 ~~~G~~~~~~~~~~~------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (388)
..+|.+++..++..- .|++.+....+++++..+...+ +||||||+.. +++.++|++.+++.++.++++.+
T Consensus 161 ~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~-~PESPk~Ll~~k~~~~~A~~sl~~y~G~~~~~~~-- 237 (485)
T KOG0569|consen 161 VVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPF-LPESPKYLLIKKGDEEEARKALKFYRGKEDVEAE-- 237 (485)
T ss_pred HHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhc-CCCCcchHHHHcCCHHHHHHHHHHHhCCCcchhH--
Confidence 999999997776554 7999999999999999888887 9999999988 89999999999999987665443
Q ss_pred Ccccccccccc--ccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q psy13784 151 TSRGDAESGAQ--GEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGL 228 (388)
Q Consensus 151 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 228 (388)
.+.+.++.++ .++.++.+.+++++++..++...+.+.+..+.++.+.+...+|...++++.|++..++.+.+...+.
T Consensus 238 -~e~~~~e~~~~~~~~~~~~sl~~~~~~~~lR~~~~i~~~v~~~qq~sGi~ai~~Yst~i~~~aG~~~~~a~~an~~~g~ 316 (485)
T KOG0569|consen 238 -IEEMLREIEEEELEKKKQISLRQLLKNPTLRRPLLIGIVVSFAQQFSGINAIFFYSTSIFKTAGFTPEEAQYANLGIGI 316 (485)
T ss_pred -HHHHHHHHHHhccccccCCcHHHHhcCcchhHHHHHHHHHHHHHHhcCcceeHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 2222222222 2223667899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhh
Q psy13784 229 IIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYL 308 (388)
Q Consensus 229 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (388)
...+.++++.++.||.|||++++.+..++.+..+++.......+.. .....+..+.+.+.+...+..|.+|+.+.
T Consensus 317 v~~~~t~~~~~lid~~gRRpLll~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~y~~i~~~~~~~~~f~~G~gpi~~f 391 (485)
T KOG0569|consen 317 VNLLSTLVSPFLIDRLGRRPLLLISLSLMAVALLLMSIALFLSNSF-----GSWLSYLCIAAIFLFIISFAIGPGPIPWF 391 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHh-----hhHHHHHHHHHHHHHHHhhhcCCCchhHH
Confidence 9999999999999999999999999999988888887655544430 01122345677888899999999999999
Q ss_pred hhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhHHHHHHHHHHHHhheeccCCCCCCHHHHHhhhcC
Q psy13784 309 MLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGIFFFYGLVAAIGTAHVLAYLPETKGKSLEEIIKGFSS 388 (388)
Q Consensus 309 ~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (388)
+.+|++|++.|+.+.++....+++..++-...++.+.+..|...++.+.+.+.+..++.++.+||||+|+.+|+.+++++
T Consensus 392 i~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~~~filF~i~~~~~~i~~~~~lPETkgr~~~eI~~~~~~ 471 (485)
T KOG0569|consen 392 IGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGPYVFILFVIPLAIFLIYLYRYLPETKGRTPYEIIEELEK 471 (485)
T ss_pred HHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHhCcccCCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999888999999999999999999999999999998877653
|
|
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=301.18 Aligned_cols=363 Identities=19% Similarity=0.187 Sum_probs=258.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcc------hhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLT------ITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWA 74 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~ 74 (388)
+||+|||+++.++.++..++.++++++++ ++.++++|+++|++.|...+....+++| ++|+++|++++++.
T Consensus 80 ~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e---~~p~~~Rg~~~~~~ 156 (502)
T TIGR00887 80 ADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSE---FATKKWRGAMMAAV 156 (502)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHH---hcChhhHHHHHHHH
Confidence 59999999999999999999999998876 7899999999999999999999999999 99999999999999
Q ss_pred HHHHHHHHHHHHHHHhHH---------------------------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcC
Q psy13784 75 TTARAFGLLQVYFMGSLL---------------------------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKG 127 (388)
Q Consensus 75 ~~~~~~G~~~~~~~~~~~---------------------------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~ 127 (388)
.....+|.++++.++..+ +||+++.+.++++++..+..++ +||||+|+..++
T Consensus 157 ~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~-lpESpr~l~~~~ 235 (502)
T TIGR00887 157 FAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLT-IPETPRYTADVA 235 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHh-CCCCHHHHHHhC
Confidence 999999998888776432 5999999888888776666555 999999998877
Q ss_pred Chh-hHHHHHHHhcCCCCCCCCCCCccccccccccccccccchhhhhccCc---cchHHHHHHHHHHHHHHhhhHHHHHH
Q psy13784 128 RRG-DAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKP---EAYKPLIIISLFFLFQQFSAVNVILA 203 (388)
Q Consensus 128 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (388)
+.+ ++.+.+.+.++.+..++. ++.++.+++++..+.++++.++++ +.++..+.....++. ....++....
T Consensus 236 ~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~y~~~~ 309 (502)
T TIGR00887 236 KDVEQAASDMSAVLQVKIEAEP-----DEVEKASTAVEVPKASWSDFFTHFFKWRHGKHLLGTAGSWFL-LDIAFYGVNL 309 (502)
T ss_pred cchHHHHHHHHHHhccccccCc-----ccccchhccccchhhhHHHHHHHHhhhHHHHHHHHHHHHHHH-HHHHHHcccc
Confidence 764 456666665543221111 111111111111223566666532 222222222222222 2223455666
Q ss_pred HHHHHHHHcCCCCCcHHH------------HHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcc
Q psy13784 204 YMTDFVRSSGFHLLNPYF------------ITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFE 271 (388)
Q Consensus 204 ~~~~~~~~~g~s~~~~~~------------~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (388)
|.|.++++.|++..+.+. ......++.+++.++.++++||+|||+.+..+..+..++..++.......
T Consensus 310 ~~p~i~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~ 389 (502)
T TIGR00887 310 NQKVILSAIGYSPPAATNNAYEELYKTAVGNLIIALAGTVPGYWVTVFLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHL 389 (502)
T ss_pred ccHHHHHHHcCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788988888886543211 23334456677889999999999999998888777776666554421100
Q ss_pred cCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc---
Q psy13784 272 KAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL--- 348 (388)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~--- 348 (388)
..........+...++..+..+..+.+..|.+|++.|+++.|+.+..++++++++|.+.+.+.+..
T Consensus 390 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~ 458 (502)
T TIGR00887 390 -----------STHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPT 458 (502)
T ss_pred -----------chhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhcccccc
Confidence 011111222222333445566777888999999999999999999999999999999999988843
Q ss_pred -------c-cchhhHHHHHHHHHHHHhheeccCCCCCCHHHHHhh
Q psy13784 349 -------G-NGIFFFYGLVAAIGTAHVLAYLPETKGKSLEEIIKG 385 (388)
Q Consensus 349 -------g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (388)
+ ...+++++++++++.+. .+++||++++++||+++|
T Consensus 459 ~~~~~~~~~~~~~~i~~~~~~~~~i~-~~~lpEt~~~~leei~~~ 502 (502)
T TIGR00887 459 KGYPTGIWMGHVLEIFALFMFLGILF-TLLIPETKGKSLEELSGE 502 (502)
T ss_pred ccccccccchHHHHHHHHHHHHHHHH-heEeccCCCCCHHhhhCC
Confidence 3 45677788777776664 467899999999998764
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-38 Score=290.53 Aligned_cols=377 Identities=26% Similarity=0.444 Sum_probs=313.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+|++|||+.++++.+++.++.+++++++|+++++++|+++|+|.|......+.|++| ..|++.||...+..+....+
T Consensus 113 ~d~~GRk~~l~~~~~~~~iG~ii~~~a~~~~~l~~GR~l~G~g~G~~~~~~piy~sE---iap~~~RG~l~~~~~l~~~~ 189 (513)
T KOG0254|consen 113 GDRIGRKKTLLLAVVLFLIGAIIIALAPSWYQLIVGRILTGLGVGGASVLAPVYISE---IAPAHIRGTLVSLYQLFITI 189 (513)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhccchhhhhhcchhhHhh---cCChhhhHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH-----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcccc
Q psy13784 81 GLLQVYFMGSLL-----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGD 155 (388)
Q Consensus 81 G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (388)
|..++..++... +||..+.+..+++++..+. .+++||||+|+.++++.+++++.+++++..++.+... ...+
T Consensus 190 Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pesp~~L~~~g~~~~a~~~l~~l~g~~~~~~~~--~~~~ 266 (513)
T KOG0254|consen 190 GILLGYCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPESPRWLIEKGRLEEAKRSLKRLRGLSPEDVEV--ELEL 266 (513)
T ss_pred HHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCChHHHHHcCChHHHHHHHHHHhCCCCcchHH--HHHH
Confidence 999998888777 4999999999999999888 6669999999999999999999999998844221110 1111
Q ss_pred cc--ccccccccccc-hhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHH
Q psy13784 156 AE--SGAQGEQMSTT-NIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFA 232 (388)
Q Consensus 156 ~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~ 232 (388)
.+ ...+....+.. .+.+.++ +..+++.+..+.+..++++.+.+...+|.+.+++..|.+... .......++...+
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~i~~~l~~fqq~tG~~~~~~Y~~~if~~~g~~~~~-~~~~~~~~~v~~~ 344 (513)
T KOG0254|consen 267 LKIKLLVEAEVAEGKASWGELFS-PKVRKRLIIGLLLQLFQQLTGINYVFYYSTTIFKSAGLKSDT-FLASIILGVVNFL 344 (513)
T ss_pred HHHHHHHhhhcccccccHHHhcC-cchHHHHHHHHHHHHHHHHhCCceEEeehHHHHHhcCCCCch-HHHHHHHHHHHHH
Confidence 11 11111111111 2344444 778888888999999999999999999999999988885443 6777788888999
Q ss_pred HHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhcc
Q psy13784 233 SVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGE 312 (388)
Q Consensus 233 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (388)
+..++..+.||+|||+.++.+...+.++.++++........... ......+..+...+++...+..+..|+++.+.+|
T Consensus 345 ~t~~~~~lvd~~gRr~lll~s~~~m~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~v~~f~~g~g~v~w~~~sE 422 (513)
T KOG0254|consen 345 GTLVATYLVDRFGRRKLLLFGAAGMSICLVILAVVGVFALYYPN--SSKGAGWLAIVFLCLFIFSFAIGWGPVPWVIVSE 422 (513)
T ss_pred HHHHHHHHHHHhccHHHHHHhHHHHHHHHHHHHHHHHHhccCCC--cccchhHHHHHHHHHHHHHHhcccccchhhhhhc
Confidence 99999999999999999999999999999988876554332000 1223457778888889999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHH-HhheeccCCCCCCHHHHHhhhc
Q psy13784 313 IFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTA-HVLAYLPETKGKSLEEIIKGFS 387 (388)
Q Consensus 313 ~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 387 (388)
.+|.+.|+.+.++....+++.+.+-........+..+ ...+..+++++.+... ..++++||||++++||+++.++
T Consensus 423 ifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pETkg~sleei~~~~~ 499 (513)
T KOG0254|consen 423 IFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPETKGLTLEEINELFE 499 (513)
T ss_pred cCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccCCCCcHHHHHHHHH
Confidence 9999999999999999999999888888888777776 7778888888887777 7889999999999999987654
|
|
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=292.00 Aligned_cols=356 Identities=18% Similarity=0.225 Sum_probs=262.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++++++++.+++.++++++++++.++++|++.|++.|+..+...+++.| ++|+++|++.+++...++.+
T Consensus 226 sDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE---~~p~~~Rg~~~g~~~~~~~i 302 (742)
T TIGR01299 226 ADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAE---FLAQEKRGEHLSWLCMFWMI 302 (742)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH-----------------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCC
Q psy13784 81 GLLQVYFMGSLL-----------------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGP 143 (388)
Q Consensus 81 G~~~~~~~~~~~-----------------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~ 143 (388)
|.++++.++..+ +||+.+++.+++.++.++..++ +||||+|+..+++.+++.+.+++++..+
T Consensus 303 G~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~-lPESPrwL~~~gr~~eA~~iL~~i~~~n 381 (742)
T TIGR01299 303 GGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTF-MPESPRFFLENGKHDEAWMILKLIHDTN 381 (742)
T ss_pred HHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHCCCHHHHHHHHHHHhcCC
Confidence 999998766433 5999999988877766555444 9999999999999999999999987765
Q ss_pred CCCCCCCCcc---ccc------c---cccccccc-----------c----cchhhhhccCccchHHHHHHHHHHHHHHhh
Q psy13784 144 PSNQTEPTSR---GDA------E---SGAQGEQM-----------S----TTNIFKEFMKPEAYKPLIIISLFFLFQQFS 196 (388)
Q Consensus 144 ~~~~~~~~~~---~~~------~---~~~~~~~~-----------~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (388)
......+... .+. + +.+++... . ..++.+++ ++.++++.+.....+++.. .
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lf-~~~~~~~tl~l~~~wf~~~-~ 459 (742)
T TIGR01299 382 MRAKGHPEKVFSVNHIKTIHQEDELIEIESDTGTWYQRCFVRALSEGGGIWGNFLRCF-NPEVREITIKLMGVWFTLS-F 459 (742)
T ss_pred CCCcCchhHHHHHHHHHHhhhhhhhhcccccccchhhcchhhhhhhhhhHHHHHHHHc-CccHHHHHHHHHHHHHHHH-H
Confidence 4321100000 000 0 00000000 0 01244444 4556777777666665544 4
Q ss_pred hHHHHHHHHHHHHHHc------------------------------------------CC-----C--------------
Q psy13784 197 AVNVILAYMTDFVRSS------------------------------------------GF-----H-------------- 215 (388)
Q Consensus 197 ~~~~~~~~~~~~~~~~------------------------------------------g~-----s-------------- 215 (388)
+++.+..|.|.++++. |+ +
T Consensus 460 ~yygl~~w~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 539 (742)
T TIGR01299 460 GYYGLSVWFPDMIKHLQADDYAALTKNFPGDKVAHFSFNFTLENQIHRGGEYDNDKFIGLKFKSVSFEDSLFEECTFDDV 539 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhccccccchhccccccchhhhhccccccccchhhcccccccccccccccccceeec
Confidence 5788899999875431 00 0
Q ss_pred -C-----------------------------------------------------CcHHHHHHHHHHHHHHHHHhhheee
Q psy13784 216 -L-----------------------------------------------------LNPYFITVIGGLIIFASVISISFIL 241 (388)
Q Consensus 216 -~-----------------------------------------------------~~~~~~~~~~~~~~~~~~~~~g~l~ 241 (388)
. ........+.+++.+++.+++++++
T Consensus 540 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~l~~l~~i~G~il~g~L~ 619 (742)
T TIGR01299 540 TSSNTFFKNCTFIDTLFENTDFEEYKFIDSEFQNCSFLHNKEGCPIDFDGDDEGAYMIYFVNFLGTLAVLPGNIVSALLM 619 (742)
T ss_pred cccchhhhccchhhhhccccchhhhhhhhhhhhhccccccCCccCccCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 0123345666788999999999999
Q ss_pred cccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHH
Q psy13784 242 PHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGV 321 (388)
Q Consensus 242 d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~ 321 (388)
||+|||+++..+.++.+++.+++.+. .+....++..++.. ++..+..+..+++++|.+|++.|++
T Consensus 620 Dr~GRr~~l~~~~~lsai~~ll~~~~--------------~s~~~ll~~~~l~g-~~~~~~~~~~~a~~aEl~Pt~~Rgt 684 (742)
T TIGR01299 620 DKIGRLRMLAGSMVLSCISCFFLSFG--------------NSESAMIALLCLFG-GLSIAAWNALDVLTVELYPSDKRAT 684 (742)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHH--------------ccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 99999999988888888887776541 11222222233333 3333345677799999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhHHHHHHHHHHHHhheeccCCCCCC
Q psy13784 322 AAGLATCLAYIFGFFAVKTWPTLHLALGNGIFFFYGLVAAIGTAHVLAYLPETKGKS 378 (388)
Q Consensus 322 ~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (388)
++|+.+...++|++++|.+.+.+.+.....++++.+++.++++++. .++|||+++.
T Consensus 685 a~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~-~~LPET~~~~ 740 (742)
T TIGR01299 685 AFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLA-LKLPDTRGQV 740 (742)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-HhCCCCcccc
Confidence 9999999999999999999998877543667777777777666644 4569998764
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-37 Score=284.56 Aligned_cols=365 Identities=24% Similarity=0.431 Sum_probs=264.7
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh------------cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhh
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYS------------LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRG 68 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~ 68 (388)
+||+|||++++++..+++++.+.++++ ++++.+++.|+++|++.|...+...++++| ++|+++|+
T Consensus 79 ~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~i~e---~~~~~~rg 155 (479)
T PRK10077 79 SNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSIGPDNTGYVPEFVIYRIIGGIGVGLASMLSPMYIAE---IAPAHIRG 155 (479)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHhhccccccccccchhHHHHHHHHHHHHhhhHhHHhhHHHHHHHh---hCChhhhh
Confidence 599999999999999999998888763 235678899999999999999999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH------------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHH
Q psy13784 69 SLATWATTARAFGLLQVYFMGSLL------------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAA 136 (388)
Q Consensus 69 ~~~~~~~~~~~~G~~~~~~~~~~~------------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~ 136 (388)
+++++.+.+..+|.++++.++..+ +||++|++.+++.++..+.. +++||+|+|+..+++.+++++..
T Consensus 156 ~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~-~~l~~s~~~l~~~~~~~~~~~~~ 234 (479)
T PRK10077 156 KLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLL-YFVPETPRYLMSRGKQEQAEGIL 234 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHH-HcCCCCcHHHHHcCCHHHHHHHH
Confidence 999999999999999988776432 79999999988887776554 45999999988777777766666
Q ss_pred HHhcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCC
Q psy13784 137 KRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHL 216 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 216 (388)
++....+.. ....++..+..+.+.......+. .........+....+.+..+.+...++.|.+.++.|++.
T Consensus 235 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~i~~~~g~~~ 305 (479)
T PRK10077 235 RKIMGNTLA-------TQALQEIKHSLDHGRKTGGKLLM--FGVGVIVIGVMLSVFQQFVGINVVLYYAPEIFKTLGAST 305 (479)
T ss_pred HHHcCChhH-------HHHHHHHHHHHHHhhhhhhhhcc--hhHHHHHHHHHHHHHHHHhChhHHHHHHHHHHHHcCCCC
Confidence 555432110 00000000000000000001110 001111222222333444455666778899888889887
Q ss_pred CcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHH
Q psy13784 217 LNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLV 296 (388)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (388)
..........++..+++.++.++++||+|||+.+..+..+..++.+.+....... ..........++...
T Consensus 306 ~~~~~~~~~~~~~~~i~~~~~g~l~dr~g~r~~~i~~~~~~~v~~~~l~~~~~~~----------~~~~~~~~~~~~~~~ 375 (479)
T PRK10077 306 DIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----------APGIVALLSMLFYVA 375 (479)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhHHHHHHHHHHHHHHHhcC----------cccHHHHHHHHHHHH
Confidence 7777777888899999999999999999999999998888888777765422111 112233333444444
Q ss_pred HHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH------hhcc-cchhhHHHHHHHHHHHHhhe
Q psy13784 297 ASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLH------LALG-NGIFFFYGLVAAIGTAHVLA 369 (388)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~------~~~g-~~~~~~~~~~~~~~~~~~~~ 369 (388)
++.....|..+.++.|.+|++.|+++.|+.+..++++..+++.+.+.+. +..+ ...+++++++++++.++.+.
T Consensus 376 ~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 455 (479)
T PRK10077 376 AFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 455 (479)
T ss_pred HHhccccchhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHh
Confidence 4544555777899999999999999999999999999999988877654 4556 66778878887887777777
Q ss_pred eccCCCCCCHHHHHhhhcC
Q psy13784 370 YLPETKGKSLEEIIKGFSS 388 (388)
Q Consensus 370 ~~~~~~~~~~~~~~~~~~~ 388 (388)
+.||+|+++.||+++++++
T Consensus 456 ~~~e~~~~~~~~~~~~~~~ 474 (479)
T PRK10077 456 FVPETKGKTLEEMEALWEP 474 (479)
T ss_pred ccccCCCCCHHHHHHHHhh
Confidence 8899999999998887653
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-44 Score=327.35 Aligned_cols=371 Identities=31% Similarity=0.499 Sum_probs=296.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhc---chhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSL---TITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTA 77 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~ 77 (388)
+||+|||+.++.+..+..+++++.++++ |++.+.++|+++|++.|+..+....++.| ..|+++|++..++.+.+
T Consensus 70 ~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E---~~~~~~R~~~~~~~~~~ 146 (451)
T PF00083_consen 70 ADRYGRKPALIISALLMIIGSILIAFAPSYNNFWMLLIGRFLIGFGIGGAYVVSPIYISE---IAPPKHRGFLSSLFQLF 146 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc---ccccccccccccccccc
Confidence 6999999999999999999999999999 99999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhHH----h---HHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCC
Q psy13784 78 RAFGLLQVYFMGSLL----R---YRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEP 150 (388)
Q Consensus 78 ~~~G~~~~~~~~~~~----~---w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (388)
+.+|.+++..++... + ||..+.+.++++++..+...+ +||||+|+..++|.+++++.+++.++.+..+++
T Consensus 147 ~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~-~pESP~wL~~~~~~~~A~~~l~~~~~~~~~~~~-- 223 (451)
T PF00083_consen 147 WALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFF-LPESPRWLLSKGRDEEAEKVLRKLRGKEIEDEE-- 223 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-cccccceeccccccccccccccccccccccccc--
Confidence 999999998887655 4 999999999999887666655 999999999999999999998886655332222
Q ss_pred CccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Q psy13784 151 TSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLII 230 (388)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~ 230 (388)
..++.++.+ +.++++.++.+.++++..+++....+.+..+.+..+.+....|.+.++++.|.+.. ........+..
T Consensus 224 -~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~ 299 (451)
T PF00083_consen 224 -IEEIKAEKK-ESQESKASWRDLFRNKKYRKRLLIALLLQFFQQFSGINFIFYYSPSIFENAGISNS--FLATLILGLVN 299 (451)
T ss_pred -ccccccccc-cccccceeeeeccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccc
Confidence 111111111 11112256777787776667777777777777777777788888888887777555 44555666778
Q ss_pred HHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhh
Q psy13784 231 FASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLML 310 (388)
Q Consensus 231 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (388)
.++.+++.++.||+|||+++..+...+.++.+.+........+ .+.......+....+....+..+..+..+.+.
T Consensus 300 ~~~~~~~~~~~~~~GRr~~~i~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~i~~~~l~~~~~~~g~~~~~~~~~ 374 (451)
T PF00083_consen 300 FLGTLLAIFLIDRFGRRKLLIIGLLLMAICSLILGIIFFLGVS-----SSSWWSILSIVFLALFFAFFSLGWGPLPWIYT 374 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccc-----cccccccccceeeeeccccccccccccccccc
Confidence 8888888899999999999988888877777766411111111 00011333444444455566667778888999
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheeccCCCCCCHHHHHhhh
Q psy13784 311 GEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPETKGKSLEEIIKGF 386 (388)
Q Consensus 311 ~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (388)
.|.+|++.|+++.++....+++++++++.+.+.+.+..+ ...+.++++++++..++.++++||||++++||++++|
T Consensus 375 ~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET~g~~l~ei~~~f 451 (451)
T PF00083_consen 375 AELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPETKGKTLEEIQEMF 451 (451)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeCCCCCHHHHHhhC
Confidence 999999999999999999999999999999999888888 8889999999999998889999999999999999876
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-36 Score=282.09 Aligned_cols=351 Identities=20% Similarity=0.250 Sum_probs=259.4
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||++++++.++.+++.+++++++|++.+++.|++.|++.+...+...+++.| ++|+++|+++.++...+..+
T Consensus 151 ~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e---~~~~~~r~~~~~~~~~~~~~ 227 (505)
T TIGR00898 151 SDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTE---FLPKKQRAIVGTLIQVFFSL 227 (505)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhhe---ecChhhhHHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH-hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcccccccc
Q psy13784 81 GLLQVYFMGSLL-RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESG 159 (388)
Q Consensus 81 G~~~~~~~~~~~-~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (388)
|.++++.++..+ +||+.|++.+++.++..+..+ ++||+|+|+..+++.+++.+.+++..+.+.....++....+.++
T Consensus 228 g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~-~~~esp~~l~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~- 305 (505)
T TIGR00898 228 GLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSW-FVPESPRWLISQGRIEEALKILQRIAKINGKKLPAEVLSLSLEK- 305 (505)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHCCCHHHHHHHHHHHHHHcCCCCCHHHHhhhhhh-
Confidence 999999998877 999999999998887776664 59999999999999998888887766544432211100000000
Q ss_pred ccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhh
Q psy13784 160 AQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAY-MTDFVRSSGFHLLNPYFITVIGGLIIFASVISIS 238 (388)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g 238 (388)
+++++.++.+.+++++++..+...+.....++. ....++ .+......+. +........++..+++.++.+
T Consensus 306 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~ 376 (505)
T TIGR00898 306 DLSSSKKQYSFLDLFRTPNLRKTTLCLMMLWFT------TAFSYYGLVLDLGNLGG---NIYLDLFISGLVELPAKLITL 376 (505)
T ss_pred hhhhccCCCcHHHHhCChHHHHHHHHHHHHHHH------HHHHHHHHhccccccCC---ChHHHHHHHHHHHHHHHHHHH
Confidence 001111234677888888777665554433332 112222 2222233343 244556677888899999999
Q ss_pred eeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhh
Q psy13784 239 FILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEV 318 (388)
Q Consensus 239 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~ 318 (388)
++.||+|||+.+..+..+.+++.+++... . ....+.......+..++. ....+..+.+..|.+|++.
T Consensus 377 ~l~dr~grr~~~~~~~~~~~~~~l~~~~~---~---------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~e~~p~~~ 443 (505)
T TIGR00898 377 LLIDRLGRRYTMAASLLLAGVALLLLLFV---P---------VDLYFLRTALAVLGKFGI-TSAFQMVYLYTAELYPTVV 443 (505)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHc---C---------CCchHHHHHHHHHHHHHH-HHHHHHHHHHhcccccHHH
Confidence 99999999999988888777777665441 1 111122222222222222 2333666789999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheeccCCCCCCHHH
Q psy13784 319 KGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPETKGKSLEE 381 (388)
Q Consensus 319 r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (388)
|+++.|+.++...+|++++|.+.+ + +..+ ..++.++++..+++.++. +++||+++++++|
T Consensus 444 r~~~~g~~~~~~~ig~~i~p~i~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~~lpet~~~~l~~ 504 (505)
T TIGR00898 444 RNLGVGVCSTMARVGSIISPFLVY-L-GEKWLFLPLVLFGGLALLAGILT-LFLPETKGVPLPE 504 (505)
T ss_pred HhhhHhHHHHHHHHHHHHHhHHHH-H-HHHHHhhHHHHHHHHHHHHHHHH-HcCcCCCCCCCCC
Confidence 999999999999999999999998 4 3444 777888887777776644 5679999877653
|
|
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-35 Score=269.96 Aligned_cols=373 Identities=25% Similarity=0.469 Sum_probs=266.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYS---LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTA 77 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~ 77 (388)
+||+|||++++.+.++..++.+++.+. .+++.+++.|+++|++.+...+....++.| ++|+++|++++++.+.+
T Consensus 95 ~d~~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~i~~---~~~~~~r~~~~~~~~~~ 171 (481)
T TIGR00879 95 SDRFGRKKSLLIIALLFVIGAILMGLAAFALSVEMLIVGRVLLGIGVGIASALVPMYLSE---IAPKALRGALTSLYQLA 171 (481)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHhHHHHHHHc---cCChhhhhhhhhHHHHH
Confidence 599999999999999999999998665 445589999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHH---hHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCC
Q psy13784 78 RAFGLLQVYFMG---SLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEP 150 (388)
Q Consensus 78 ~~~G~~~~~~~~---~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (388)
..+|..+++.++ ... +||+.|++.++..++..+.. +++||+|++...+++.+++++..++....+..+....
T Consensus 172 ~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (481)
T TIGR00879 172 ITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGL-FFLPESPRWLVGKGRVEEARKSLARLRGTSGEDKELL 250 (481)
T ss_pred HHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHH-hcCCCChHHHHHcCChHHHHHHHHHHhCCCCCcHHHH
Confidence 999999999998 443 99999999766665554444 4599999987777666665555444333221111000
Q ss_pred Cccccccccc-cccccccchhhhhccCcc-chHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q psy13784 151 TSRGDAESGA-QGEQMSTTNIFKEFMKPE-AYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGL 228 (388)
Q Consensus 151 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 228 (388)
......+... .+.+..+..+.+.++..+ ...+.+....+..+..........++.|.+.++.|++..+.+.......+
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 330 (481)
T TIGR00879 251 DELELIDIKRSIEKRSVQPSWGSLFSSTRRIRRRLFLGVVLQWFQQFTGINAIMYYSPTIFENAGVSTDHAFLVSIIVGA 330 (481)
T ss_pred HHHHHHHHHHHHHHhhccccHHHHHhcCchhHHHHHHHHHHHHHHHHhCCeehHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence 0000000000 000011111223322211 23334444444444444445567788898888889988888888889999
Q ss_pred HHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhh
Q psy13784 229 IIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYL 308 (388)
Q Consensus 229 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (388)
+.+++.++.+++.||++||+.+..+.....++.+.+.......... ......+.......+...++..+..+....
T Consensus 331 ~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (481)
T TIGR00879 331 VNFAFTFVAIFLVDRFGRRPLLLIGAAGMAICLFVLGILGASFVTG----SSKSSGNVAIVFILLFIAFFAMGWGPVPWV 406 (481)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhcccCC----cccchhHHHHHHHHHHHHHHHccccCeehh
Confidence 9999999999999999999998888777777766665322111110 000012333444445555566666677778
Q ss_pred hhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheeccCCCCCCHHH
Q psy13784 309 MLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPETKGKSLEE 381 (388)
Q Consensus 309 ~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (388)
+..|.+|++.|+++.++.+...+++++++|.+.+.+.+..+ ...+++.+++++++.++.+++.||+++++.+|
T Consensus 407 ~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 480 (481)
T TIGR00879 407 IVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETKGRTLEE 480 (481)
T ss_pred hhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCCCCChhh
Confidence 88999999999999999999999999999999999999888 77788888888888887777888888776553
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=264.05 Aligned_cols=332 Identities=15% Similarity=0.156 Sum_probs=223.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhH--------HHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITN--------LFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLAT 72 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~ 72 (388)
+||+|||+++.++.++++++++++++++|+.+ +++.|+++|++.|+.++...+++.| ++|+++|+++.+
T Consensus 81 ~Dr~Grr~~l~~~~~l~~i~~~~~a~~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e---~~p~~~Rg~~~~ 157 (490)
T PRK10642 81 GDKYGRQKILAITIVIMSISTFCIGLIPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAE---YSPDRKRGFMGS 157 (490)
T ss_pred HHhcccHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHH---hCCCCCCcHHHH
Confidence 59999999999999999999999999999875 8999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhH------------HhHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhc
Q psy13784 73 WATTARAFGLLQVYFMGSL------------LRYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLR 140 (388)
Q Consensus 73 ~~~~~~~~G~~~~~~~~~~------------~~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~ 140 (388)
+...+..+|..+++.+... .|||++|++.+++.++..++ ...+||+|+|...+++.++..
T Consensus 158 ~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~-~~~~~esp~~~~~~~~~~~~~------- 229 (490)
T PRK10642 158 WLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYL-RHALEETPAFQQHVDKLEQGD------- 229 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHH-HHcCCCChhHHHHHHhhhhhc-------
Confidence 9998888888887755432 18999999987766654444 445999998754322111100
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcH
Q psy13784 141 LGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNP 219 (388)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~ 219 (388)
. + . . .+.++.++.+.+++ .++......... +.....++....|.|.+++ ..|++..+.
T Consensus 230 ~---~------~------~---~~~~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~l~~~~g~s~~~~ 288 (490)
T PRK10642 230 R---E------G------L---QDGPKVSFKEIATK--HWRSLLTCIGLV-IATNVTYYMLLTYMPSYLSHNLHYSEDHG 288 (490)
T ss_pred c---c------c------c---cccccCCHHHHHHH--hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 0 0 0 0 00111234444442 222222222222 2233445667788999886 458877777
Q ss_pred HHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHH
Q psy13784 220 YFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASS 299 (388)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
........++..++.++.|+++||+|||+.+..+.....+....+.... .. .+.........+...+.+
T Consensus 289 ~~~~~~~~~~~~~~~~~~g~l~dr~grr~~~~~~~~~~~~~~~~~~~~~--~~---------~~~~~~~~~~~~~g~~~~ 357 (490)
T PRK10642 289 VLIIIAIMIGMLFVQPVMGLLSDRFGRRPFVILGSVALFVLAIPAFILI--NS---------NVIGLIFAGLLMLAVILN 357 (490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHH--hC---------CCHHHHHHHHHHHHHHHH
Confidence 7777777888899999999999999999988776654333322211110 00 111222222222222222
Q ss_pred hccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc--cchhhHHHHHHHHHHHHhheeccCCCCC
Q psy13784 300 VGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG--NGIFFFYGLVAAIGTAHVLAYLPETKGK 377 (388)
Q Consensus 300 ~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (388)
... .....+.+|.+|++.|+++.|+.+.....++.++|.+.+++.+..+ ..+++...+.++++.+. .++.||++++
T Consensus 358 ~~~-g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~-~~~~pes~~~ 435 (490)
T PRK10642 358 CFT-GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLIT-GVTMKETANR 435 (490)
T ss_pred HHH-HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHH-HHHhccccCC
Confidence 222 3344677899999999999998777788888999999999888765 33444444444444443 3455877543
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-33 Score=231.92 Aligned_cols=354 Identities=18% Similarity=0.163 Sum_probs=266.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+|++|||+.+.+.....++...+.+.++|+..+++.|.+.|+|.|+ .|...++-.| ..|..+|..-+-.. ..+.+
T Consensus 137 ~d~~grr~~f~~T~l~t~v~~~is~~spnf~~L~~f~~l~~~g~gg-~pv~~~~yle---~lp~~~r~~~~V~~-~~wai 211 (528)
T KOG0253|consen 137 ADTIGRRKGFNLTFLVTGVFGVISGASPNFASLCVFRALWGFGVGG-LPVDSAIYLE---FLPSSHRWLLTVMS-FFWAI 211 (528)
T ss_pred hhhhhcchhhhhhHHHHHHHHHhhcCCCCeehhhHHHHHHhccCCC-ccHhHHHHHH---hccCcCCCcchhHH-HHHHH
Confidence 6999999999999999999999999999999999999999999999 7888899999 89999998877666 88999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcc---
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSR--- 153 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 153 (388)
|.+....++... ||||.......+..+...+.++ +|||||++..+++++++.+.++++.+.|..+-+.....
T Consensus 212 g~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w-~~ESpRf~~~~G~~~kAletL~kiArmNg~qlplgvl~~s~ 290 (528)
T KOG0253|consen 212 GQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVW-VYESPRFYLAKGDDYKALETLHKIARMNGKQLPLGVLESSA 290 (528)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhh-cccCcchhhhcCChHHHHHHHHHHHHhcCCCCCcceeeeeh
Confidence 999998888776 9999999999777777777777 99999999999999999999999988776543221111
Q ss_pred -ccccc----ccc----ccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc------------
Q psy13784 154 -GDAES----GAQ----GEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSS------------ 212 (388)
Q Consensus 154 -~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------ 212 (388)
++.++ ..+ ..++.+.+..++ ..|+++++.++....++...+.. +........+++..
T Consensus 291 ~~~~e~e~~~~~~~~~~a~ke~rg~~~nL-lsp~lrkttlllw~iwfgnafsy-yg~VLlttelfqsgd~c~~~~r~~p~ 368 (528)
T KOG0253|consen 291 IDRQEQEESDLDDSKSSAAKEVRGGTTNL-LSPKLRKTTLLLWRIWFGNAFSY-YGSVLLTTELFQSGDACPLYNRFLPT 368 (528)
T ss_pred hhhhhhhhhchhhhhhccccccccchHhh-cChHHHHHHHHHHHHHHhhHHHH-HHHHHHHHHHHhccCccccchhcchh
Confidence 11111 111 112233333444 44667777777666666544443 22222333333321
Q ss_pred --------CCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccc
Q psy13784 213 --------GFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFN 284 (388)
Q Consensus 213 --------g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (388)
..+...-+.-..+..+..++|.++.+++.||+|||+.+..+++++++..+++... . ..
T Consensus 369 e~e~~~~c~~s~~~dYrdllitslaefPGlLIt~~iverlGRKkTMal~l~~f~iflfll~~c--~------------~r 434 (528)
T KOG0253|consen 369 ELETRANCPLSVAKDYRDLLITSLAEFPGLLITGVIVERLGRKKTMALSLILFGIFLFLLTTC--K------------TR 434 (528)
T ss_pred HHHhhhcCCccchhHHHHHHHHHHhhCCchhHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHh--c------------Cc
Confidence 1122333556677789999999999999999999999999998888887777441 1 22
Q ss_pred hHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHH
Q psy13784 285 LIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIG 363 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~ 363 (388)
....+..+..-.+...+ ....|.|.+|++|+..|+++.|.+....++|+++.|.+. +..... ..+..+++++++++
T Consensus 435 n~~tvllf~arafisg~-fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA--~~~e~s~sl~i~vy~~~~ila 511 (528)
T KOG0253|consen 435 NAYTVLLFTARAFISGA-FQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIA--MRAELSTSLPIFVYGALFILA 511 (528)
T ss_pred chhHHHHHHHHHHHhch-heEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHH--HHhccceeehHHHHHHHHHHH
Confidence 22333333344444444 467789999999999999999999999999999999998 444444 88899999999999
Q ss_pred HHHhheeccCCCCCCH
Q psy13784 364 TAHVLAYLPETKGKSL 379 (388)
Q Consensus 364 ~~~~~~~~~~~~~~~~ 379 (388)
.+...++--|+|+|.+
T Consensus 512 gIavcffPiEtkGR~l 527 (528)
T KOG0253|consen 512 GIAVCFFPIETKGRSL 527 (528)
T ss_pred HHHheeeeeccCCCCC
Confidence 9988777779998863
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-32 Score=231.29 Aligned_cols=305 Identities=17% Similarity=0.183 Sum_probs=234.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
.||+.||++++..+.++.++++++++++||+.++++|++.|+..|..++...++..+ ..|+++|++++++...+.++
T Consensus 72 t~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~---lvpp~~~~~Aiaiv~~G~tl 148 (394)
T COG2814 72 TGRLERRRLLLGLLALFIVSNLLSALAPSFAVLLLARALAGLAHGVFWSIAAALAAR---LVPPGKRGRALALVFTGLTL 148 (394)
T ss_pred HcccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCccchhhHHHHHHHHHHH
Confidence 489999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
+.++|.+++.++ |||..|+..+.++++..+..+..+| |+.. ++
T Consensus 149 A~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP--~~~~--~~----------------------------- 195 (394)
T COG2814 149 ATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP--PSEI--SG----------------------------- 195 (394)
T ss_pred HHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC--CccC--CC-----------------------------
Confidence 999999999888 9999999999999999999988898 2100 00
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHH
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVI 235 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~ 235 (388)
+.+.+..+..+.+|+|+.+.......+ .+.+.+...+|...+++ ..|+|....++....++++.++|+.
T Consensus 196 -----~~~~~~~~~~~~l~~p~v~~~l~~t~l-----~~~g~F~~ftYi~P~L~~v~g~s~~~vs~~Ll~~Gv~~~~Gn~ 265 (394)
T COG2814 196 -----SLPGPLRTLLRLLRRPGVLLGLLATFL-----FMTGHFALYTYIRPFLESVAGFSVSAVSLVLLAFGIAGFIGNL 265 (394)
T ss_pred -----CCCcchhHHHHHhcCchHHHHHHHHHH-----HHcchhhhHHhHHHHHHHccCCCHhHHHHHHHHHHHHHHHHHH
Confidence 001112234667777775554433332 22334555555555555 5699999999999999999999999
Q ss_pred hhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCc
Q psy13784 236 SISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFP 315 (388)
Q Consensus 236 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 315 (388)
++|++.|| +.|+.+.....+..+..+.+.+. ..+.+.......+.. ....|....+..+..+
T Consensus 266 ~gGrl~dr-~~~~~l~~~~~l~a~~~l~l~~~-------------~~~~~~~~~~~~~wg----~a~~~~~~~~~~~~a~ 327 (394)
T COG2814 266 LGGRLADR-GPRRALIAALLLLALALLALTFT-------------GASPALALALLFLWG----FAFSPALQGLQTRLAR 327 (394)
T ss_pred HHhhhccc-cchhHHHHHHHHHHHHHHHHHHh-------------cchHHHHHHHHHHHH----HHhhhhhhHHHHHhcc
Confidence 99999999 88888877777777776666541 122233333333322 2222333333333333
Q ss_pred --hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhhe
Q psy13784 316 --MEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLA 369 (388)
Q Consensus 316 --~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 369 (388)
++.++.+.+++....|+|..+|..+.|.+.|+.| ....+..+.+.+++.++...
T Consensus 328 ~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~~g~~~~~~~~a~l~~~a~~~~~~ 384 (394)
T COG2814 328 LAPDAADLAGSLNVAAFNLGIALGAALGGLVLDALGYAATGWVGAALLLLALLLALL 384 (394)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999988 66677777766666665443
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-32 Score=245.23 Aligned_cols=323 Identities=15% Similarity=0.126 Sum_probs=214.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchh--------HHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTIT--------NLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLAT 72 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~ 72 (388)
+||+|||+++..+..+++++++++++++|+. .+++.|+++|++.|..++....++.| +.|+++|++..+
T Consensus 88 ~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e---~~p~~~rg~~~~ 164 (438)
T PRK09952 88 GDRLGRKRMLMLTVWMMGIATALIGLLPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVE---SAPKNKKAFYSS 164 (438)
T ss_pred HHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHH---hCCCCCCcHHHH
Confidence 5999999999999999999999999999987 58899999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhH------------HhHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhc
Q psy13784 73 WATTARAFGLLQVYFMGSL------------LRYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLR 140 (388)
Q Consensus 73 ~~~~~~~~G~~~~~~~~~~------------~~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~ 140 (388)
....+..+|.+++..+... .+||.+|++.+++.++...+ ....||+|+|...+++.++.
T Consensus 165 ~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l-~~~~~es~~~~~~~~~~~~~-------- 235 (438)
T PRK09952 165 GVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWV-RNGMEESAEFEQQQHEQAAA-------- 235 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHH-HHhCCCChhHHHHHhhcccc--------
Confidence 9999999999888765432 28999999988876554333 33488988764332111000
Q ss_pred CCCCCCCCCCCccccccccccccccccchhh-hhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCc
Q psy13784 141 LGPPSNQTEPTSRGDAESGAQGEQMSTTNIF-KEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLN 218 (388)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~ 218 (388)
+++.+.. ..+++++.+. ...... +......+....|.|.+.+ +.|++...
T Consensus 236 ------------------------~~~~~~~~~l~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~~~y~~~~~g~s~~~ 287 (438)
T PRK09952 236 ------------------------KKRIPVIEALLRHPGAFL---KIIALR-LCELLTMYIVTAFALNYSTQNLGLPREL 287 (438)
T ss_pred ------------------------cccCCHHHHHHHchHHHH---HHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 0000111 2333333222 111112 2223334556677888775 45776655
Q ss_pred HHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHH
Q psy13784 219 PYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVAS 298 (388)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (388)
........++...++.++.|+++||+|||+.+..+..+..++...+..... .. +..+.......+...+.
T Consensus 288 ~~~~~~~~g~~~~i~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~l~~~~~ 357 (438)
T PRK09952 288 FLNIGLLVGGLSCLTIPCFAWLADRFGRRRVYITGALIGTLSAFPFFMALE-AQ---------SIFWIVFFSIMLANIAH 357 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHH-cC---------ChHHHHHHHHHHHHHHH
Confidence 445555667778888899999999999999887776555444332222110 00 11122222222222222
Q ss_pred HhccccchhhhhccCCchhhHHHHHHHHHHHHH-HHHHHHHHHhHHHHhhcc--c-chhhHHHHHHHHHHHHhheeccCC
Q psy13784 299 SVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAY-IFGFFAVKTWPTLHLALG--N-GIFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 299 ~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~-~g~~~~~~~~g~l~~~~g--~-~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
....+..+++..|.+|++.|+++.++.+.... +++.++|.+.+++.+..+ + ..+...++..+++.+. .+..+|+
T Consensus 358 -~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~-~~~~~~~ 435 (438)
T PRK09952 358 -DMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMT-ALLMKDN 435 (438)
T ss_pred -HHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH-HHHcccc
Confidence 22235566899999999999999999776654 899999999999988653 3 3344444444444443 3445554
Q ss_pred C
Q psy13784 375 K 375 (388)
Q Consensus 375 ~ 375 (388)
+
T Consensus 436 ~ 436 (438)
T PRK09952 436 Q 436 (438)
T ss_pred c
Confidence 3
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-32 Score=246.48 Aligned_cols=336 Identities=14% Similarity=0.095 Sum_probs=224.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++.++.++.+++.+++++++|++.+++.|++.|++.|...+...+++.| ++|+++|++++++.+.+.++
T Consensus 82 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~---~~~~~~rg~~~~~~~~~~~~ 158 (434)
T PRK11663 82 SDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTA---WYSRTERGGWWAIWNTAHNV 158 (434)
T ss_pred HhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHH---hCCHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..+++.+.+.+ +||+.|++.+++.++..+...+++||+|++...+...+..++ .. +.
T Consensus 159 g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~-----------------~~-~~ 220 (434)
T PRK11663 159 GGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAMGLPSVGEWRHD-----------------AL-EL 220 (434)
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhcCCCCccccccc-----------------cc-cc
Confidence 999999988877 999999999888776666555558988754211110000000 00 00
Q ss_pred cccccccccccchhh--hhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHH
Q psy13784 157 ESGAQGEQMSTTNIF--KEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFAS 233 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~ 233 (388)
++..++++.+.++.. ..++++..+. .....+........+..|.|.+++ +.|++..+.+.......++..++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~~~~~~~g 295 (434)
T PRK11663 221 AQQQEGAGLSRKEILTKYVLLNPYIWL-----LSFSYVLVYVVRAAINDWGNLYMSETLGVDLVTANSAVSMFELGGFIG 295 (434)
T ss_pred chhccccCCChhhhHHHHHhcChHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHH
Confidence 000000000111111 1333333222 222222222334556678888885 56999889999999999999999
Q ss_pred HHhhheeeccc--CCchHH-HHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhh
Q psy13784 234 VISISFILPHT--GVKPLS-AASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLML 310 (388)
Q Consensus 234 ~~~~g~l~d~~--g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (388)
+++.|++.||+ ++|+.. ........+....+... . . .+..... ...+..+.+..+.........
T Consensus 296 ~~~~g~l~dr~~~~~r~~~~~~~~~~~~~~~~~~~~~--~-~---------~~~~~~~-~~~~~~g~~~~~~~~~~~~~~ 362 (434)
T PRK11663 296 ALVAGWGSDKLFNGNRGPMNLIFAAGILLSVGSLWLM--P-F---------ASYVMQA-ACFFTIGFFVFGPQMLIGMAA 362 (434)
T ss_pred HHHHhhhHHHhccCCccHHHHHHHHHHHHHHHHHHHc--c-c---------ccHHHHH-HHHHHHHHHHhhHHHHHHHHH
Confidence 99999999998 333332 22221222222111110 0 0 1111111 112222222222222233567
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheeccCCC
Q psy13784 311 GEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 311 ~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (388)
.|.+|++.|+++.|+.++..++|+.++|.+.|++.|..| ...+...+++.+++.+..+...++++
T Consensus 363 ~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~ 428 (434)
T PRK11663 363 AECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALLLLPFLNAQA 428 (434)
T ss_pred HhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 899999999999999999999999999999999999999 67777777777776665544444443
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-31 Score=244.32 Aligned_cols=330 Identities=18% Similarity=0.201 Sum_probs=226.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+..++....++.| ++|+++|+++.++...+..+
T Consensus 77 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~~l 153 (426)
T PRK12307 77 ADKFGRKPLMMWSIVAYSVGTGLSGLASGVIMLTLSRFIVGMGMAGEYACASTYAVE---SWPKHLKSKASAFLVSGFGI 153 (426)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhHHHHHHHHHHH---hCCHhHhhHhhhHHHHHHhH
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|.++++.+...+ +||+.|++..+..++...+ ....||++++..++.+ ..++
T Consensus 154 g~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~-~~~~p~~~~~~~~~~~------------~~~~------------ 208 (426)
T PRK12307 154 GNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYI-RARAPESKEWEEAKLS------------GKGK------------ 208 (426)
T ss_pred HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHH-HHHCCCChHHHHhhhh------------cccc------------
Confidence 999999887766 9999999865544333222 2225666543211100 0000
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHh
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVIS 236 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~ 236 (388)
+.++..+....++++.++++..+....... .. +..+.....+..+.|.++++.|+++.+.+.......++.++++++
T Consensus 209 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~ 285 (426)
T PRK12307 209 -HSQSAWSVFSLSMKGLFNRAQFPLTLCVFI-VL-FSIFGANWPIFGLLPTYLAGEGFDTGVVSNLMTAAAFGTVLGNIV 285 (426)
T ss_pred -ccccchhhhhHHHHHHHhhchHHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 000000011224556666665443222211 11 122222334566788888888998888888888889999999999
Q ss_pred hheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCch
Q psy13784 237 ISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPM 316 (388)
Q Consensus 237 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 316 (388)
.+++.||++||+.+..+.....+..+.+... . ...................+..+....++.|.+|+
T Consensus 286 ~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~---~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 352 (426)
T PRK12307 286 WGLCADRIGLKKTFSIGLLMSFLFIFPLFRI---P----------QDNYLLLGACLFGLMATNVGVGGLVPKFLYDYFPL 352 (426)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHHHH---c----------cccHHHHHHHHHHHHHhcccHhHHHHHHHHHhCcH
Confidence 9999999999998877776655554433221 0 11122122212222222223334455778999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cc-hhhHHHHHHHHHHHHhheeccCC
Q psy13784 317 EVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NG-IFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 317 ~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~-~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
+.|++++|+.+...++++.++|.+.|++.+..| .. .++..+..+..+........|++
T Consensus 353 ~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (426)
T PRK12307 353 EVRGLGTGLIYNLAATSGTFNSMAATWLGITMGLGAALTFIVAFWTATILLIIGLSIPDR 412 (426)
T ss_pred HHHhhhhhHHHHHHhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhccccCChh
Confidence 999999999999999999999999999999988 33 33344434444343333444554
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-33 Score=234.81 Aligned_cols=336 Identities=15% Similarity=0.132 Sum_probs=247.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||.+.|+.+..++++.++.+++++++++++.+.+..+++|..+|...|.+...+.. |++++|||+..++++++-++
T Consensus 88 sDr~npr~fm~~gLilsai~nil~Gfs~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~---Wfsr~eRG~~~siWn~shNi 164 (448)
T COG2271 88 SDRSNPRYFMAFGLILSAIVNILFGFSPSLFLFAVLWVLNGWFQGMGWPPCARTITH---WFSRKERGTWWSIWNTSHNI 164 (448)
T ss_pred cccCCCceeehHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCcHHHHHHHH---HcCccccCceEEEehhhhhc
Confidence 799999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHH--hHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccc
Q psy13784 81 GLLQVYFMG--SLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRG 154 (388)
Q Consensus 81 G~~~~~~~~--~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
|..+.|++. +.+ +||..|++.++++++..++.++..+|+|+-.--. +.++ .++ +
T Consensus 165 GGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP-~ie~-------~~~------------d 224 (448)
T COG2271 165 GGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLP-PIEE-------YRG------------D 224 (448)
T ss_pred ccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCC-CHHH-------hhc------------C
Confidence 999999988 665 9999999999999999999999899998521100 0000 000 0
Q ss_pred cccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHHHHH
Q psy13784 155 DAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNPYFITVIGGLIIFAS 233 (388)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~ 233 (388)
+.+..+++++.+.-+.++++.+...+++.++...+........-+.+..|.|.|+.+ .|+|..++....+.+-.++++|
T Consensus 225 ~~e~~~~~~~~~~ls~~~i~~~YVL~Nk~iW~la~a~vfvYivR~gi~dW~p~YL~e~k~~s~~~a~~a~~lfE~agl~G 304 (448)
T COG2271 225 PLEIYEEEKENEGLTAWQIFVKYVLKNKLIWLLALANVFVYVVRYGINDWGPLYLSEVKGFSLVKANWAISLFEVAGLPG 304 (448)
T ss_pred chhhhhhhccCCCccHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcCCCHHHHHHHHHHHHHHhhHH
Confidence 000001111111133344443333333344444444444444568899999999974 5999999999999999999999
Q ss_pred HHhhheeeccc--CCchHHHHhh-HHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhh
Q psy13784 234 VISISFILPHT--GVKPLSAASG-MGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLML 310 (388)
Q Consensus 234 ~~~~g~l~d~~--g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (388)
++++|+++||+ |||....+.+ +...++++.+.. . .+.++.....+....++...+..-+.-..+
T Consensus 305 ~Ll~GwlSDklfkgrR~p~~~i~~~~i~~~~~~~w~----~---------~~~~~~l~~~~l~~iGf~IyGPqmLiGl~a 371 (448)
T COG2271 305 TLLAGWLSDKLFKGRRGPMALIFMLLITASLVLYWL----A---------PNGSYLLDAILLFIIGFLIYGPQMLIGLAA 371 (448)
T ss_pred HHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHc----C---------CCccHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999996 5666554333 233333333322 1 112344444445555555555444444678
Q ss_pred ccCCchhhHHHHHHHHHHHHHH-HHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheecc
Q psy13784 311 GEIFPMEVKGVAAGLATCLAYI-FGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLP 372 (388)
Q Consensus 311 ~~~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 372 (388)
.|..|++..|++.|+...+.++ |...+....|++.|.+| ...|.++.+.++++.++......
T Consensus 372 ~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~~gW~g~Fi~~~~~a~l~~lll~~~~~ 435 (448)
T COG2271 372 AEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADTWGWDGGFIVLSIAALLAILLLLPVWN 435 (448)
T ss_pred hccccHhhccchhchhhhHHHHhhHHhcCCcceeeEecCCCcchHHHHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999 99999999999989988 66777776666666665544443
|
|
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-31 Score=237.21 Aligned_cols=307 Identities=13% Similarity=0.072 Sum_probs=224.4
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+..+.+++++.+++++|++.+++.|+++|++.+...+...+++.| ++|+++|++++++...+.++
T Consensus 68 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~i~~---~~~~~~r~~~~g~~~~~~~~ 144 (390)
T PRK03545 68 TSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISRIGIAFAHAIFWSITASLAIR---VAPAGKKAQALSLLATGTAL 144 (390)
T ss_pred HcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCChhhhhhHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999888999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..++|.++..+ +||+.|++.+++.++..+..++.+||.|+ ++.
T Consensus 145 g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~-----~~~--------------------------- 192 (390)
T PRK03545 145 AMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLPS-----EHS--------------------------- 192 (390)
T ss_pred HHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCCC-----CCc---------------------------
Confidence 999999998876 99999999999888776666665676542 000
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHHHHHHH
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNPYFITVIGGLIIFASVI 235 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~ 235 (388)
.+.++..+.++++..+.......... ........+.+.++++ .|++..+.+......+++.+++++
T Consensus 193 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~g~s~~~~~~~~~~~~~~~~~g~~ 259 (390)
T PRK03545 193 --------GSLKSLPLLFRRPALVSLYLLTVVVV-----TAHFTAYSYIEPFVQQVAGLSENFATLLLLLFGGAGIIGSV 259 (390)
T ss_pred --------chHHHHHHHHhCcHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHH
Confidence 00112345666665443222222111 1123334555556554 688888899999999999999999
Q ss_pred hhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCc
Q psy13784 236 SISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFP 315 (388)
Q Consensus 236 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 315 (388)
+.+++.||+++|... .+..+..++...+... ..+.+.......+. +.......+.......|..|
T Consensus 260 ~~g~l~dr~~~~~~~-~~~~~~~~~~~~l~~~-------------~~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~~ 324 (390)
T PRK03545 260 LFSRLGNRHPSGFLL-IAIALLLVCLLLLLPA-------------ANSEWHLSVLSIFW-GIAIMCIGLAMQVKVLKLAP 324 (390)
T ss_pred HHHHHhhccchhHHH-HHHHHHHHHHHHHHHH-------------hchHHHHHHHHHHH-HHHHhcchHHHHHHHHHhCC
Confidence 999999999987654 3333333333322210 01222222222222 22333333445567777776
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheec
Q psy13784 316 MEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYL 371 (388)
Q Consensus 316 ~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 371 (388)
+.|++++|+.+...++|..+||.+.|.+.|..| ...+...+.+.+++.++.+...
T Consensus 325 -~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 380 (390)
T PRK03545 325 -DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWSILIF 380 (390)
T ss_pred -CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999999 7777777777777766655444
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-31 Score=240.36 Aligned_cols=312 Identities=16% Similarity=0.133 Sum_probs=226.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+.++..++.+++.++++++.+++.|++.|++.+...+...+++.| ++|+++|++++++.+.+..+
T Consensus 74 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~~~ 150 (406)
T PRK11551 74 ADRIGRKRILIVSVALFGLFSLATAQAWDFPSLLVARLLTGVGLGGALPNLIALTSE---AVGPRLRGTAVSLMYCGVPF 150 (406)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..+++.++..+ +||+.|++.++..++..+....++||+|++..++++.++.+
T Consensus 151 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~----------------------- 207 (406)
T PRK11551 151 GGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQAAGAGKQRA----------------------- 207 (406)
T ss_pred HHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhccCcchhhh-----------------------
Confidence 999999988766 89999999888777766666666899876432211100000
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHh
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVIS 236 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~ 236 (388)
....+.++++..++.. . .....+......+....|.|.++++.|++..+.+.......++.+++.++
T Consensus 208 -----------~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~ 274 (406)
T PRK11551 208 -----------PVLRALFGEGRATATL-L-LWISYFFTLIVLYFLLNWLPSLLVGQGLSRSQAGLVQIAFNIGGALGSLL 274 (406)
T ss_pred -----------hhHHHHhhhhhhhHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhhhHHHHHHHHHHHHHHHH
Confidence 0001111111111111 1 11111222233456667889999888999999999999999999999999
Q ss_pred hheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCch
Q psy13784 237 ISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPM 316 (388)
Q Consensus 237 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 316 (388)
.|++.||++||+.+..+.....++...+.. ..+.+..... .+..+....+..+..+++..|.+|+
T Consensus 275 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~p~ 339 (406)
T PRK11551 275 IGALMDRLRPRRVVLLIYAGILASLAALAA--------------APSFAGMLLA-GFAAGLFVVGGQSVLYALAPLFYPT 339 (406)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHh--------------cCcHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHcch
Confidence 999999999999887766555555444432 0112222222 2223333333446667889999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cch-hhHHHHHHHHHHHH
Q psy13784 317 EVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGI-FFFYGLVAAIGTAH 366 (388)
Q Consensus 317 ~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~-~~~~~~~~~~~~~~ 366 (388)
+.|+++.|+.+...++|..++|.+.|.+.+..+ +.. +.......+++.++
T Consensus 340 ~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~ 391 (406)
T PRK11551 340 QVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALA 391 (406)
T ss_pred hhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998766 433 33333333333333
|
|
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-31 Score=244.96 Aligned_cols=355 Identities=22% Similarity=0.212 Sum_probs=262.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
|||+|||++++.++++..++.+..++++|++.+++.|+++|++.++.......+++| +.++++|+.+..+ ......
T Consensus 142 sD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E---~~~~~~R~~~~~~-~~~~~~ 217 (521)
T KOG0255|consen 142 SDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAE---IVSPKQRGLALTL-GGFFFV 217 (521)
T ss_pred HhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhhee---ecCcchhhHHHHH-HHHHHH
Confidence 699999999999999999999999999999999999999999999999999999999 9999999999999 555555
Q ss_pred HHHHHHHHHhHH--hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc--
Q psy13784 81 GLLQVYFMGSLL--RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA-- 156 (388)
Q Consensus 81 G~~~~~~~~~~~--~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 156 (388)
+..+++..+.++ +||+.+++..++.++.++. +++.||||||+..+++.+++.+.++++.+.|+..........+.
T Consensus 218 ~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~-~~l~~Es~rwl~~~g~~~~a~~~l~~~a~~n~~~~~~~~~~~~~~~ 296 (521)
T KOG0255|consen 218 GGLMLPAGAAYITRDWRWLFWIISIPSGLFLLL-WFLPPESPRWLLSKGRIDEAIKILKKIAKLNGRKLSVKELLRLELL 296 (521)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-HHccCcChHHHHHcCchHHHHHHHHHHHhhcCCCCCcHHHHHHHHH
Confidence 566665655555 9999999999999888777 45477999999999999999999998876652222211111111
Q ss_pred -cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHH
Q psy13784 157 -ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVI 235 (388)
Q Consensus 157 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~ 235 (388)
++.+....+++..+.+.++.++.++..+...+.++. ....++...+... ++ ..+........+........
T Consensus 297 ~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~------~~~~y~gl~~~~~-~l-g~~~~~~~~~~~~~~~p~~~ 368 (521)
T KOG0255|consen 297 LRPLKLLFTEPKISFLDLFRTPRLRYRTLYLLFIWFV------FSLVYYGLSLNVS-GL-GGNIYLNFTLSGLVELPAYF 368 (521)
T ss_pred hhHhhhhccCCCCchhhhhcCHHHHHHHHHHHHHHHH------HhHHHHhhhhhhh-hc-CchHHHHHHHHHHHHhhHHH
Confidence 111111222335678888888777766666655532 2333333333222 33 34566677777778888888
Q ss_pred hhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccc-hHHHHHHHHHHHHHHhccccchhhhhccCC
Q psy13784 236 SISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFN-LIPLAALVLNLVASSVGFLPIPYLMLGEIF 314 (388)
Q Consensus 236 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (388)
..+...|+.|||.....+.....++++..++.... .. +.......+..++...++... +.+..|++
T Consensus 369 ~~~~~~~~~gR~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~el~ 435 (521)
T KOG0255|consen 369 RNGLLLPEFGRRPPLFLSLFLAGIGLLLFGWLPDD------------LGGWLHWILPLLGKFFIGSAFNLI-FLYSAELI 435 (521)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhcc------------chhHHHHHHHHHHHHHHHHHHHHH-HHHHHhhc
Confidence 88999999999999999999999988888763211 11 234444444445555555434 79999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhHHHHHHHHHHHHhheeccCCCCCCHHH
Q psy13784 315 PMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGIFFFYGLVAAIGTAHVLAYLPETKGKSLEE 381 (388)
Q Consensus 315 p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (388)
|+..|..+.+..+....++++++|.+............+..++....+..++...++||++++.+.+
T Consensus 436 pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~~~l~~ 502 (521)
T KOG0255|consen 436 PTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKGKPLPG 502 (521)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCCCCCch
Confidence 9999999999999999999999999876544422233333356677777766768899999887654
|
|
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-31 Score=241.07 Aligned_cols=315 Identities=14% Similarity=0.125 Sum_probs=215.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+.++++++++++++++|++.+++.|+++|++.+...+....++.| ++|+++|++++++++.+.++
T Consensus 67 ~dr~G~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~---~~~~~~rg~~~~~~~~~~~~ 143 (412)
T TIGR02332 67 LAIIGARRWIAGIMVLWGIASTATMFATGPESLYLLRILVGIAEAGFLPGILLYLTF---WFPAYFRARANALFMIAMPV 143 (412)
T ss_pred HHHhChHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999999999999999999998899999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----------hHHHHHHHhHHHHHHHHHHHHhccCCCchH---HhhcCChhhHHHHHHHhcCCCCCCC
Q psy13784 81 GLLQVYFMGSLL----------RYRKVAAMAAIFSALGTILITFIIPESPAW---LNSKGRRGDAEWAAKRLRLGPPSNQ 147 (388)
Q Consensus 81 G~~~~~~~~~~~----------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (388)
|..+++.+++.+ +||+.|++.+++.++..++.++++||+|+. +.+ ++.+...++.+....+ .
T Consensus 144 g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p~~~~~l~~----~~~~~~~~~~~~~~~~-~ 218 (412)
T TIGR02332 144 TMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSPDKAKWLDE----EDKKALKEMIDNDQLT-L 218 (412)
T ss_pred HHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCcccCCCCCH----HHHHHHHHHHHhcccc-c
Confidence 999999887653 899999999999888777777779999852 211 1111111111111000 0
Q ss_pred CCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc--CCCCCcHHHHHHH
Q psy13784 148 TEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSS--GFHLLNPYFITVI 225 (388)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~s~~~~~~~~~~ 225 (388)
+++ +. ..+++....+..+++.+ ++.. +......++.....+.+..|.|.++++. |++..+.+.....
T Consensus 219 ~~~--~~---~~~~~~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~s~~~~~~~~~~ 287 (412)
T TIGR02332 219 EQP--EG---AFAHAAMPQRSMLREIF-TPAI-----MLYTLAYFCLTNTLSAINIWTPQILQSFNQGSSNIMIGLLAAI 287 (412)
T ss_pred ccc--cc---ccccccccHHHHHHHhc-ChHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcHHHhHHHhhH
Confidence 000 00 00000001111222222 2322 2222333334445677888999999874 6677788888899
Q ss_pred HHHHHHHHHHhhheeecccCCchHH-HHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhcccc
Q psy13784 226 GGLIIFASVISISFILPHTGVKPLS-AASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLP 304 (388)
Q Consensus 226 ~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (388)
..++..++.++.|+++||+++|+.. ........++. .+.. . . ...............+. ....+
T Consensus 288 ~~l~~~~g~l~~g~l~dr~~~r~~~~~~~~~~~~~~~-~~~~---~-~---------~~~~~~~~~~~~~~~g~-~~~~~ 352 (412)
T TIGR02332 288 PQFCTIFGMIWWSRHSDRLKERKHHTALPYLFAAAGW-LLAS---A-T---------DHNLIQLLGIIMASMGS-FSAMA 352 (412)
T ss_pred HHHHHHHHHHHHHHHhcccCccHHHHHHHHHHHHHHH-HHHH---h-c---------CCHHHHHHHHHHHHHHh-hhhhh
Confidence 9999999999999999999977743 33333333332 2111 0 0 11121111111111111 11123
Q ss_pred chhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 305 IPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 305 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
..+....|.+|++.|++++|+.+...++|++++|.+.|.+.|..|
T Consensus 353 ~~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g 397 (412)
T TIGR02332 353 IFWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATG 397 (412)
T ss_pred HHHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCC
Confidence 344556788999999999999999999999999999999999887
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=236.76 Aligned_cols=311 Identities=19% Similarity=0.205 Sum_probs=207.7
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchh--------HHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTIT--------NLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLAT 72 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~ 72 (388)
+||+|||+++..+..+++++++++++++++. .+++.|+++|++.|..++...+++.| ++|+++|+++.+
T Consensus 87 ~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e---~~p~~~rg~~~~ 163 (432)
T PRK10406 87 ADKHGRKKSMLISVCMMCFGSLVIACLPGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSE---VAVEGRKGFYAS 163 (432)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHH---hCCCCcccHHHH
Confidence 6999999999999999999999999999875 58999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhH------------HhHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhc
Q psy13784 73 WATTARAFGLLQVYFMGSL------------LRYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLR 140 (388)
Q Consensus 73 ~~~~~~~~G~~~~~~~~~~------------~~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~ 140 (388)
+...+...|.++++.+... .|||++|++.+++.++...+. ..+||+|++..++.
T Consensus 164 ~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~-~~~~e~~~~~~~~~------------- 229 (432)
T PRK10406 164 FQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLR-RQLDETSQQETRAL------------- 229 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHH-hcCCCCchHHHhhh-------------
Confidence 9988888888887765432 289999999888877664443 34788765311000
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcH
Q psy13784 141 LGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNP 219 (388)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~ 219 (388)
+++.++++.+++++.+. ......+.....++.+..|.|.+++ +.|++..+.
T Consensus 230 ------------------------~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~ 281 (432)
T PRK10406 230 ------------------------KEAGSLKGLWRNRRAFI----MVLGFTAAGSLCFYTFTTYMQKYLVNTAGMHANVA 281 (432)
T ss_pred ------------------------cccccHHHHHhhHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 00113445555443221 1112222223335667788888886 468877777
Q ss_pred HHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHH
Q psy13784 220 YFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASS 299 (388)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
+.......+...++..+.|+++||++||+.+.....+..+....+.... . . ............+......
T Consensus 282 ~~~~~i~~~~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~-~-~--------~~~~~~~~~~~~~~~~~~~ 351 (432)
T PRK10406 282 SGIMTAALFVFMLIQPLIGALSDKIGRRTSMLCFGSLAALFTVPILSAL-Q-N--------VSSPYAAFGLVMCALLIVS 351 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHH-H-c--------CCcHHHHHHHHHHHHHHHH
Confidence 7777777888888889999999999999877665544333322221111 0 0 0111221111111111111
Q ss_pred hccccchhhhhccCCchhhHHHHHHHHHHHHHH-HHHHHHHHhHHHHhhcc-cch-hhHHHHHHHHHHHHhh
Q psy13784 300 VGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYI-FGFFAVKTWPTLHLALG-NGI-FFFYGLVAAIGTAHVL 368 (388)
Q Consensus 300 ~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~-~~~~~~~~~~~~~~~~ 368 (388)
. ..+..+.+.+|.+|++.|+++.|+.+..++. .+...|.+.+. .+..| +.. ++..++..+++.+..+
T Consensus 352 ~-~~~~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~~p~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~ 421 (432)
T PRK10406 352 F-YTSISGILKAEMFPAQVRALGVGLSYAVANALFGGSAEYVALS-LKSIGMETAFFWYVTLMAVVAFLVSL 421 (432)
T ss_pred H-HHHHHHHHHHHHCCCCccchhhhHHHHHHHHHHHhHHHHHHHH-HHHhCCCcHHHHHHHHHHHHHHHHHH
Confidence 1 2234557889999999999999999988775 34457777775 46566 443 4444444444444333
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-31 Score=247.02 Aligned_cols=330 Identities=13% Similarity=0.021 Sum_probs=219.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHh-----hcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITY-----SLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWAT 75 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~ 75 (388)
+||+|||+++..+.+++++..+..++ ++|++.+++.|+++|++.+...+...++++| ++|+++|++++++..
T Consensus 88 ~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~---~~~~~~rg~a~gi~~ 164 (467)
T PRK09556 88 ADGKNTKQFLPFLLILSAICMLGFGASLGSGSVSLGLMIALWALSGFFQSTGGPCSYSTITR---WTPRRKRGRFLGFWN 164 (467)
T ss_pred hhccCccchHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhccchHHHHHHHH---HcCccceeeeEEeee
Confidence 69999999998888888777766655 6899999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHhHH-------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCC
Q psy13784 76 TARAFGLLQVYFMGSLL-------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQT 148 (388)
Q Consensus 76 ~~~~~G~~~~~~~~~~~-------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (388)
.+.++|.++++.+.... +||..|.+.+++.++..++.+++.+|+|+.... .+.++. ..+.
T Consensus 165 ~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~~~~~----~~~~~~---~~~~------ 231 (467)
T PRK09556 165 ISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPEELGW----GKAEEI---FGEP------ 231 (467)
T ss_pred cccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChhhcCC----CChhhc---ccCc------
Confidence 99999999998887544 489999998888887777777767887742110 010100 0000
Q ss_pred CCCccccccccccccccccchhh-hhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHH
Q psy13784 149 EPTSRGDAESGAQGEQMSTTNIF-KEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIG 226 (388)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~ 226 (388)
...+.++.++++....+.+. +.++++..+... ...++..........|.|.+++ +.|++..+++......
T Consensus 232 ---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~yl~~~~g~s~~~a~~~~~~~ 303 (467)
T PRK09556 232 ---ISEEDKETESTDMTKWQIFVEYVLKNPVIWLLC-----FANIFLYIVRIGIDNWSPVYAFQELGFSKEDAINTFTLF 303 (467)
T ss_pred ---cchhhhccccccCcHHHHHHHHHHcChHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 00000000000000011111 245555443322 2222233334567788998886 4699888888888889
Q ss_pred HHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccch
Q psy13784 227 GLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIP 306 (388)
Q Consensus 227 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (388)
.++..++.++.|+++||++||+..........++...+.. . . . .+.+....... ..+....+.....
T Consensus 304 ~~~~~ig~~~~G~lsDr~g~r~~~~~~~~~~~~~~~~~~~-~-~-~---------~~~~~~~~~~~-~~G~~~~~~~~~~ 370 (467)
T PRK09556 304 EIGALVGSLLWGWLSDLANGRRALVACIALALIIFTLGVY-Q-H-A---------TSEYMYLASLF-ALGFLVFGPQLLI 370 (467)
T ss_pred HHHHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHHH-H-h-c---------CcHHHHHHHHH-HHHHHHhhHHHHH
Confidence 9999999999999999999988765544333332222211 0 0 0 12222222222 2222222221222
Q ss_pred hhhhccCCchhhHHHHHHHHHHHHHH-HHHHHHHHhHHHHh------------hcc-cchhhHHHHHHHHHHHHh
Q psy13784 307 YLMLGEIFPMEVKGVAAGLATCLAYI-FGFFAVKTWPTLHL------------ALG-NGIFFFYGLVAAIGTAHV 367 (388)
Q Consensus 307 ~~~~~~~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~g~l~~------------~~g-~~~~~~~~~~~~~~~~~~ 367 (388)
.....|.+|++.+|++.|+.+..+++ |.+++|.+.|.+.| ..+ ...+++..+..+++.+..
T Consensus 371 ~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~ 445 (467)
T PRK09556 371 GVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM 445 (467)
T ss_pred HHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence 35667999999999999999999997 77999999999999 455 556666666666655443
|
|
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-30 Score=237.23 Aligned_cols=295 Identities=19% Similarity=0.236 Sum_probs=196.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchh--------HHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTIT--------NLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLAT 72 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~ 72 (388)
+||+|||++++.+..++++++++++++++++ .++++|+++|++.+...+....+++| ++|+++|+++++
T Consensus 80 ~Dr~Grr~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e---~~p~~~rg~~~~ 156 (434)
T PRK15075 80 IDRVGRRKGLIVTLSIMASGTLLIAFVPGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAE---IATPGRKGFYTS 156 (434)
T ss_pred hhhhchHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHh---hCCcccchHHHH
Confidence 5999999999999999999999999999987 46899999999999999989999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHH------------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhc
Q psy13784 73 WATTARAFGLLQVYFMGSLL------------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLR 140 (388)
Q Consensus 73 ~~~~~~~~G~~~~~~~~~~~------------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~ 140 (388)
+...+.++|..+++.++..+ +||++|++..+...+. .......||++++..++++
T Consensus 157 ~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~-~~~~~~~~e~~~~~~~~~~------------ 223 (434)
T PRK15075 157 WQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFI-FLIRRSLEETEEFLARKHR------------ 223 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH-HHHHHhcCCCHHHHHhhhc------------
Confidence 99888777777766665542 8999999765443222 2222224443321100000
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCCCcH
Q psy13784 141 LGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNP 219 (388)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~ 219 (388)
.+.++.+.+..++ ++.....+ ...+......+....|.|.++++ .|++..+.
T Consensus 224 -----------------------~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~~~~~~~~~~p~~l~~~~g~~~~~~ 276 (434)
T PRK15075 224 -----------------------PSMREIFRSLAAN---WRIVLAGM-LMVAMTTVSFYLITVYTPTFGKTVLHLSAADS 276 (434)
T ss_pred -----------------------cccccHHHHHHHh---HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 0000011111111 12222222 22222334456778889999875 69988888
Q ss_pred HHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHH
Q psy13784 220 YFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASS 299 (388)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
+.......++.+++.++.|+++||++||+.+..+..+..+...... ...... ...........+...+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~-~~~~~~---------~~~~~~~~~~~~~~~~~- 345 (434)
T PRK15075 277 LLVTLCVGVSNFIWLPIGGALSDRIGRRPVLIAFTVLAILTAYPAL-SWLVAA---------PSFARMLAVELWLSFLY- 345 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH-HHHHcC---------CchHHHHHHHHHHHHHH-
Confidence 8888888899999999999999999999987765444322211111 011111 11111111111122222
Q ss_pred hccccchhhhhccCCchhhHHHHHHHHHHHHHH-HHHHHHHHhHHHHhhcc
Q psy13784 300 VGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYI-FGFFAVKTWPTLHLALG 349 (388)
Q Consensus 300 ~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~g~l~~~~g 349 (388)
....+..+.+..|.+|++.|+++.++.+..... ++.++|.+.|.+.|..|
T Consensus 346 g~~~~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~g 396 (434)
T PRK15075 346 GSYNGAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVTG 396 (434)
T ss_pred HHHHhhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhcC
Confidence 223344557889999999999999997666654 58889999999999888
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-30 Score=230.13 Aligned_cols=304 Identities=13% Similarity=0.038 Sum_probs=206.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+......+.+.....+|++.+++.|+++|++.+. .+.....++| ++|+++|++++++...+..+
T Consensus 50 ~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~---~~~~~~r~~a~~~~~~~~~l 125 (368)
T TIGR00903 50 LDRAFKRWFLFGSLATFAAAAGRLLDPFNYEWLLACQLLAALGQPF-LLNAFAPAAS---QIREERRDLVISLLSFAMYL 125 (368)
T ss_pred HHHccchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhHhHH-HHHHHHHHHH---HcCHHHHHHHHHHHHHHHHH
Confidence 5999999987666555545443333338999999999999999986 4556666799 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|.+++++++..+ +||+.|++.++++++..++.++++||+|++.. +..+.
T Consensus 126 G~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~~---~~~~~------------------------ 178 (368)
T TIGR00903 126 GIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQAA---EGFGF------------------------ 178 (368)
T ss_pred HHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC---CCcch------------------------
Confidence 999999999888 99999999999988887877777999986421 00000
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHh
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVIS 236 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~ 236 (388)
++..+++++.++++..+.. ....++.....+.+..|.|.++++.|++.. .+.......+.+.++
T Consensus 179 -------~~~~~~~~~ll~~~~~~~~-----~~~~~~~~~~~~~~~~wlp~~L~~~g~s~~-~~~~~~l~~~~g~~g--- 242 (368)
T TIGR00903 179 -------KDAVKEFGALAGRKDLWII-----GAILGFGVALFDNLAIWLEAALRPAGLEDI-AGDAVALAILAGLIG--- 242 (368)
T ss_pred -------HHHHHHHHHHHcChhHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHH---
Confidence 0001234567776654332 223333444467778899999988788653 455555555555544
Q ss_pred hheeecccCCc---hHHHH-hhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhcc
Q psy13784 237 ISFILPHTGVK---PLSAA-SGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGE 312 (388)
Q Consensus 237 ~g~l~d~~g~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (388)
.++++||..|| +.... .....++....+.. ..+.+....... ..+++.....+..+++.+|
T Consensus 243 ~~~~~d~~~r~~~r~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~ 307 (368)
T TIGR00903 243 VAVIPDRVARAGLRSIYIRAAALLIAAFFLALAF--------------ELNRLALFAFIG-IAGLLMLPAYAIIMDWIGK 307 (368)
T ss_pred HHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHH--------------ccccHHHHHHHH-HHHHhhhhhHHHHHHHHHH
Confidence 46777877543 32222 22222222222221 011222222222 2223333333556688999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhh
Q psy13784 313 IFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVL 368 (388)
Q Consensus 313 ~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~ 368 (388)
.+|++.|+++.|+.+..+++++..+|.+.+.+.. + ...+..+++..+++.+...
T Consensus 308 ~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--~~~~~f~~~~~~~~i~~~~~~ 362 (368)
T TIGR00903 308 FCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--SAEAYFTFLAILITIAFAIAL 362 (368)
T ss_pred hcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988773 6 6667777777777766543
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=232.78 Aligned_cols=314 Identities=12% Similarity=0.030 Sum_probs=221.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+..+++++.+.+++++|++.+++.|+++|++.+...+....++.| ++| ++|+++++++..+..+
T Consensus 68 ~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~---~~~-~~~~~~~g~~~~~~~~ 143 (393)
T PRK09705 68 HQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKR---RFQ-QRTPLVMGLWSAALMG 143 (393)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHH---Hcc-ccchhHHHHHHHHHHH
Confidence 499999999999999999999999999999999999999999999999999999999 876 7899999999988888
Q ss_pred HHHHHHHHHhHH-----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcccc
Q psy13784 81 GLLQVYFMGSLL-----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGD 155 (388)
Q Consensus 81 G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (388)
|..+++.++..+ +||..+.+.++..++..+..+...++.|+ ++ +
T Consensus 144 g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---------------~-------- 192 (393)
T PRK09705 144 GGGLGAAITPWLVQHSETWYQTLAWWALPAVVALFAWWWQSAREVA--------SS---------------H-------- 192 (393)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCc--------cc---------------c--------
Confidence 888888877765 79999887766654443332221111110 00 0
Q ss_pred ccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHH
Q psy13784 156 AESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVI 235 (388)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~ 235 (388)
+++....+.+++++.+.. . ...+.....+.....|.|.++++.|++..+.+......+++.+++++
T Consensus 193 ---------~~~~~~~~~l~~~~~~~l----~-~~~~~~~~~~~~~~~~lp~~l~~~g~s~~~ag~~~~~~~i~~i~g~~ 258 (393)
T PRK09705 193 ---------KTTTTPVRVVFTPRAWTL----G-VYFGLINGGYASLIAWLPAFYIEIGASAQYSGSLLALMTLGQAAGAL 258 (393)
T ss_pred ---------CCCcCCcccccCHhHHHH----H-HHHHHHHHHHHHHHHHHHHHHHHcCCChhhhhHHHHHHHHHHHHHHH
Confidence 000011223333332221 1 12222233456677888999888899999999999999999999999
Q ss_pred hhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCC-
Q psy13784 236 SISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIF- 314 (388)
Q Consensus 236 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 314 (388)
+.+++.||++||+....+..+..++...+... . ....... ..+...+. ....+.......+..
T Consensus 259 ~~g~l~~r~~~~~~~~~~~~l~~~~~~~~~~~---~----------~~~~~~~--~~l~g~g~-g~~~~~~~~~~~~~~~ 322 (393)
T PRK09705 259 LMPAMARHQDRRKLLMLALVLQLVGFCGFIWL---P----------LQLPVLW--AMVCGLGL-GGAFPLCLLLALDHSV 322 (393)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHHHHHHHHc---c----------chHHHHH--HHHHHHhc-cchHHHHHHHHHhhcC
Confidence 99999999999998888776666665544321 1 0111111 11222222 223344444555665
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc--cchhhHHHHHHHHHHHHhheeccCCCCCCH
Q psy13784 315 PMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG--NGIFFFYGLVAAIGTAHVLAYLPETKGKSL 379 (388)
Q Consensus 315 p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (388)
|++.+++..|+.+...++++.++|.+.|++.|..| ...+.+.+..+++..+....+.||+++|..
T Consensus 323 ~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 389 (393)
T PRK09705 323 QPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARFPQLW 389 (393)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccccchh
Confidence 56789999999999999999999999999999988 444555555566666666677788766543
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-30 Score=236.04 Aligned_cols=342 Identities=13% Similarity=0.083 Sum_probs=218.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh----cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYS----LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATT 76 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~ 76 (388)
+||+|||++++.+.++.+++.+.++++ ++++.+++.|++.|++.+...+.....+.| ++|+++|++++++.+.
T Consensus 87 ~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~---~~~~~~r~~~~~~~~~ 163 (452)
T PRK11273 87 SDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH---WWSQKERGGIVSVWNC 163 (452)
T ss_pred hhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHH---hCChHHHHHHHHHHHH
Confidence 699999999999999999999988876 378889999999999999988888888999 9999999999999999
Q ss_pred HHHHHHH-HHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCC
Q psy13784 77 ARAFGLL-QVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPT 151 (388)
Q Consensus 77 ~~~~G~~-~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (388)
+.++|.. .+++++..+ +||+.|++.+++.++..++.++++||+|+....+++ ++.+ ++. .
T Consensus 164 ~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~---~~~-~---------- 228 (452)
T PRK11273 164 AHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQSCGLPPI-EEYK---NDY-P---------- 228 (452)
T ss_pred HHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhhcCCCCh-hhhh---hcc-c----------
Confidence 9998864 455543222 999999999988888777777768998753211110 0000 000 0
Q ss_pred ccccccccccccccccchh-hhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHH
Q psy13784 152 SRGDAESGAQGEQMSTTNI-FKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNPYFITVIGGLI 229 (388)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~ 229 (388)
.+.++.++++...++.+ ...++++..+...+... ......+....|.|.++++ .|++..+.+.......++
T Consensus 229 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~P~~l~~~~g~s~~~~~~~~~~~~~~ 301 (452)
T PRK11273 229 --DDYNEKHEQELTAKQIFMQYVLPNKLLWYIAIANV-----FVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA 301 (452)
T ss_pred --cccccccCCCccHHHHHHHHHHcChHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 00000000000001111 12344444332222111 1222245567789999975 588888888888888899
Q ss_pred HHHHHHhhheeeccc--CCchHHH-HhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccch
Q psy13784 230 IFASVISISFILPHT--GVKPLSA-ASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIP 306 (388)
Q Consensus 230 ~~~~~~~~g~l~d~~--g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (388)
.+++.++.|+++||+ +||+... ....+..++...+.. ... .+.+.......... ....+..+..
T Consensus 302 ~~~g~~~~G~l~dr~~~~r~~~~~~~~~~l~~~~~~~~~~---~~~---------~~~~~~~~~~~~~g-~~~~~~~~~~ 368 (452)
T PRK11273 302 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWL---NPA---------GNPTVDMACMIVIG-FLIYGPVMLI 368 (452)
T ss_pred HHHHHHHHHHHHHHHccCCcchHHHHHHHHHHHHHHHHHH---hcc---------cChHHHHHHHHHHH-HHHHhHHHHH
Confidence 999999999999998 4444322 222222222222211 000 11122222222222 2111221223
Q ss_pred hhhhccCCchhhHHHHHHHHHHHHHHHHHH-HHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheeccCCCCCCHHH
Q psy13784 307 YLMLGEIFPMEVKGVAAGLATCLAYIFGFF-AVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPETKGKSLEE 381 (388)
Q Consensus 307 ~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~-~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (388)
..+..|.+|++.||++.|+.+...++|+.+ +|.+.|.+.|..| ...+++.++.++++.+....+.+ .++|+.||
T Consensus 369 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 444 (452)
T PRK11273 369 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMI-GEKRHHEE 444 (452)
T ss_pred HHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhc-cccchHHH
Confidence 356779999999999999999999998765 7999999999999 77777777777776665543333 33333343
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-30 Score=234.78 Aligned_cols=315 Identities=16% Similarity=0.159 Sum_probs=215.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||++++.+.++.+++.++++++++++.+++.|++.|++.+...+...+++.| ++|+++|+++.++...+..+
T Consensus 71 ~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~ 147 (405)
T TIGR00891 71 GDRYGRRLPMVTSIVLFSAGTLACGFAPGYITMFIARLVIGIGMGGEYGSSAAYVIE---SWPKHLRNKASGLLISGYAV 147 (405)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHH---hCChhhhhHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----h--HHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccc
Q psy13784 81 GLLQVYFMGSLL----R--YRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRG 154 (388)
Q Consensus 81 G~~~~~~~~~~~----~--w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
|..+++.++..+ + ||+.|++.++..++..+.. ..+||++++..++++.++..+..++..+.+.. ...
T Consensus 148 g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 220 (405)
T TIGR00891 148 GAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLR-KNIPEAEDWKEKHAGKALVRTMVDILYGGEHR------IAN 220 (405)
T ss_pred HHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHH-HhCCCChhHHHHhhhhhhhhhHHHHHhccchh------hhh
Confidence 999999988876 4 9999998776666554444 44899876543322221111111111110000 000
Q ss_pred cccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHH
Q psy13784 155 DAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFAS 233 (388)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~ 233 (388)
..+....+.++. .++.+...........+.. ........+.|.+++ +.|++..+.+.......++.+++
T Consensus 221 -------~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~g 290 (405)
T TIGR00891 221 -------IVMTLAAAMVQS--AGKRWPTFVYLVVLVLFAN-LYSHPIQDLLPTYLKADLGLSPHTVANIVVFSNIGAIVG 290 (405)
T ss_pred -------hhhhhhHHhhhh--hhhhhHHHHHHHHHHHHHH-HHHhhhhhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHH
Confidence 000000011110 0111111111121222111 122344556677765 56998888899999999999999
Q ss_pred HHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccC
Q psy13784 234 VISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEI 313 (388)
Q Consensus 234 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (388)
.++.+++.||++||+.+..+.....+....... . . .+.+.... .....+....+..+....+..|.
T Consensus 291 ~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~--~-~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 356 (405)
T TIGR00891 291 GCVFGFLGDWLGRRKAYVCSLLAGQLLIIPVFA--I-G----------ANVAVLGL-GLFFQQMLVQGIWGILPKHLGEY 356 (405)
T ss_pred HHHHHHHHHHhCchhhhHHHHHHHHHHHHHHHH--h-C----------CchHHHHH-HHHHHHHHHccchhhHHHHHhhh
Confidence 999999999999999887766554332222211 0 0 11222222 22222333334445666888999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 314 FPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 314 ~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
+|++.|++++|+.+...+++..++|.+.|.+.|..|
T Consensus 357 ~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~g 392 (405)
T TIGR00891 357 FPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRLD 392 (405)
T ss_pred CCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999988
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.8e-30 Score=235.85 Aligned_cols=328 Identities=13% Similarity=0.023 Sum_probs=237.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHh-----hcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITY-----SLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWAT 75 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~ 75 (388)
+||+|||+++..+..+.+++.+..+. .++++.+++.|+++|++.+...+...+++.| +.|+++|+++.++..
T Consensus 76 ~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 152 (417)
T PRK10489 76 ADRYDRKKLILLARGTCGLGFIGLALNAFLPEPSLLAIYLLGLWDGFFGSLGVTALLAATPA---LVGRENLMQAGAITM 152 (417)
T ss_pred hhhcCCceEEEehHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhh---ccCHHHHHHHHHHHH
Confidence 59999999999888887777665442 5788999999999999988888888899999 999999999999999
Q ss_pred HHHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCC
Q psy13784 76 TARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPT 151 (388)
Q Consensus 76 ~~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (388)
...++|..+++.+++.+ +|++.|++.++..++..+..+. +||+++.. ++.++
T Consensus 153 ~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~---~~~~~-------------------- 208 (417)
T PRK10489 153 LTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLR-LPALPPPP---QPREH-------------------- 208 (417)
T ss_pred HHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh-CCCCCCCC---ccccc--------------------
Confidence 99999999999998877 8999999888777766555544 77754210 00000
Q ss_pred ccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHH
Q psy13784 152 SRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNPYFITVIGGLII 230 (388)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~ 230 (388)
+.++.++.++..++++..+...+..+ ... . ......+.|.+.++ .|.++.+.+......+++.
T Consensus 209 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~----~-~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~ 272 (417)
T PRK10489 209 ----------PLRSLLAGFRFLLASPVVGGIALLGG-LLT----M-ASAVRVLYPALADEVWQMGAAQIGLLYAAVPLGA 272 (417)
T ss_pred ----------chHHHHHHHHHHHcChHHHHHHHHHH-HHH----H-HHhHHHhhHHHHHhccCCChhHhHHHHHHHHHHH
Confidence 00011122333445444332222111 111 1 23455677888876 7998888999999999999
Q ss_pred HHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhh
Q psy13784 231 FASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLML 310 (388)
Q Consensus 231 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (388)
+++.++.+++.||.++++.+..+..+..++.+++.. .++.+...+...+.+.+ .....+...++.
T Consensus 273 ~ig~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~ 337 (417)
T PRK10489 273 ALGALTSGWLAHSARPGLLMLLSTLGSFLAVGLFGL--------------MPMWILAVLCLALFGYL-SAISSLLQYTLL 337 (417)
T ss_pred HHHHHHHHHhhhccCcchHHHHHHHHHHHHHHHHHc--------------cchHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 999999999999987777777776666666555433 11122222222222222 222234556788
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheeccCCCCCCHHHHHhhh
Q psy13784 311 GEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPETKGKSLEEIIKGF 386 (388)
Q Consensus 311 ~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (388)
.|..|++.|++++|+.+...++|..++|.+.|.+.+..| ...+...+.+.++..++.....+++|++++||+|++-
T Consensus 338 ~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 414 (417)
T PRK10489 338 QTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELRRFRQTPPEVDA 414 (417)
T ss_pred HhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhcccccccccccccCCC
Confidence 999999999999999999999999999999999999999 7777777777777666677778999988888887654
|
|
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.5e-30 Score=235.28 Aligned_cols=334 Identities=14% Similarity=0.148 Sum_probs=228.4
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+.++.+++.+++++++|++.+++.|++.|++.+...+....++.| ++|+++|++++++......+
T Consensus 53 ~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~~~ 129 (399)
T TIGR00893 53 LDRFGARKTLAVFIVIWGVFTGLQAFAGAYVSLYILRVLLGAAEAPFFPGIILIVAS---WFPASERATAVSIFNSAQGL 129 (399)
T ss_pred HHhcCcceeeHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhhhHHHHHHHH---hCCHHHHHHHHHHHHHhchH
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|.++++.+++.+ +||+.|++.+++.++..+..++..||+|+... ...++.++...+ . .. .+
T Consensus 130 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~-~~---------~~- 194 (399)
T TIGR00893 130 GGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQKAK--WLTEEEKYIVVG--G-LL---------AE- 194 (399)
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCCccc--cCCHHHHhhcch--h-hc---------cc-
Confidence 999999998876 99999999999888877777776787764211 001111000000 0 00 00
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHH
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVI 235 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~ 235 (388)
.+.+++++.++.+.++.+++++.+... ...+...........+.|.+++ ..|.++.+.+.......++.+++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (399)
T TIGR00893 195 QQGKGPSTPKKYQIKELLKDRRVWGLA-----LGQFLVNIGLGFFLTWFPTYLVQERGLSILEAGFMASLPGIVGFIGMI 269 (399)
T ss_pred cccccccCCCccchHHHhcCHHHHHHH-----HHHHHHHhHHHHHHHHHHHHHHHHhcccHHHhhHHHHHHHHHHHHHHH
Confidence 000111112233455666665433222 2222233335566777888876 4688888888999999999999999
Q ss_pred hhheeecccCCchHHH-HhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCC
Q psy13784 236 SISFILPHTGVKPLSA-ASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIF 314 (388)
Q Consensus 236 ~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (388)
+.+++.||++||+... .......++.+........... .............. ....+..+..+.+..|.+
T Consensus 270 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 340 (399)
T TIGR00893 270 LGGRLSDLLLRRGKSLVFARKTAIIAGLVLSLLMFATNY--------VNIPYAALALVALG-FFGLGAGAIGWALISDNA 340 (399)
T ss_pred HHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHhcc--------chhHHHHHHHHHHH-HhchhhhhHHHHHHHhhc
Confidence 9999999999986211 1111111111111111100000 11122222222222 222335677889999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-c-chhhHHHHHHHHHHHH
Q psy13784 315 PMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-N-GIFFFYGLVAAIGTAH 366 (388)
Q Consensus 315 p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~-~~~~~~~~~~~~~~~~ 366 (388)
|++.|+++.|+.+...++|+.++|.+.|.+.|..| + ..+...+++.+++.+.
T Consensus 341 ~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~ 394 (399)
T TIGR00893 341 PGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALS 394 (399)
T ss_pred ChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999887 3 4444555555554443
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=225.78 Aligned_cols=363 Identities=18% Similarity=0.171 Sum_probs=259.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcc-------hhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLT-------ITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATW 73 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~ 73 (388)
+||+|||+++...+++..+++++++++.. .+++...|++.|+|.|+.+|...+..+| ...+++||...+.
T Consensus 108 gD~~GRK~vYG~~liImIi~t~~~~~s~~~~~~~~~m~~L~~~R~~LGiGIGGDYPlSAtI~SE---~an~~~RGa~iaa 184 (538)
T KOG0252|consen 108 GDKFGRKKVYGKELIIMIICSALSGLSVGTTSPLGVMMTLCFFRFLLGIGIGGDYPLSATIMSE---SANKKTRGAFIAA 184 (538)
T ss_pred HhhhcchhhhhHHHHHHHHHHHHhccCCCCCCCcchhhHHHHHHHHhhccccCCCcchHHHhhh---hhhhccccceeEE
Confidence 59999999999999999999998888722 4678999999999999999999999999 8999999999998
Q ss_pred HHHHHHHHHHHHHHHHhHH-------------------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCC-hhhHH
Q psy13784 74 ATTARAFGLLQVYFMGSLL-------------------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGR-RGDAE 133 (388)
Q Consensus 74 ~~~~~~~G~~~~~~~~~~~-------------------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~-~~~~~ 133 (388)
..+..+.|.+.|.+++..+ =||..+.+.+++++......+. +|||++|....++ .+.+.
T Consensus 185 vFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~~ly~Rl~-M~Et~~Y~al~~~~~~~a~ 263 (538)
T KOG0252|consen 185 VFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALLVLYFRLK-MPETARYTALVSKKLKQAA 263 (538)
T ss_pred EEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHhhhc-CCcchhHHHHhhcCHhhhh
Confidence 8888888888887776665 4999999999999999888888 9999998633322 12221
Q ss_pred HHHHHhcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC
Q psy13784 134 WAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSG 213 (388)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 213 (388)
++..+....+.. .+.+.+......+.....+.+.+..+ .-+.++..+..++... ..++....+...+++..|
T Consensus 264 ---~d~~k~~~~~~~---~~~~~~~~~~~~~~~~~~F~~~f~~~-hg~~Llgt~~~WFllD-iafy~~nL~~s~I~~~ig 335 (538)
T KOG0252|consen 264 ---GDMKKVLSVDIE---AESTAESDVPPPSNSFGLFSRLFLRW-HGKHLLGTAGTWFLLD-IAFYGQNLFQSVIFSAIG 335 (538)
T ss_pred ---hccccccccccc---hhhccccCCCCcccccchHHHHHHHH-HHHHHHHHHHHHHhhh-hhhhccccHHHHHHHhhc
Confidence 111111111000 00000000011111112233333333 3344555555555433 335677778888888777
Q ss_pred CCCCcHHH--------HHHH-HHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccc
Q psy13784 214 FHLLNPYF--------ITVI-GGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFN 284 (388)
Q Consensus 214 ~s~~~~~~--------~~~~-~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (388)
+.+.+... ...+ .....++|..+...++|++|||+..+.++.++.+..+.++..... . ...
T Consensus 336 ~~~~~~~~~~~~~vA~~~~iia~~~~vPGyw~tv~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~--~--------~~~ 405 (538)
T KOG0252|consen 336 VIPSANTYHELFKVAEGNLIIAVCSTVPGYWFTVYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQ--L--------ENT 405 (538)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHHccCCceeEEEEEeehhhhHHHHHhhHHHHHHHHHHHcCCccc--c--------ccc
Confidence 76554333 1222 223334466677788999999999999999888888777652211 0 123
Q ss_pred hHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHh-----hcc-cchhhHHHH
Q psy13784 285 LIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHL-----ALG-NGIFFFYGL 358 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~-----~~g-~~~~~~~~~ 358 (388)
....+...+..++.+.+.+.....+.+|.+|++.|+++.|+...++..|++++...+.++.+ ..+ .+.++++++
T Consensus 406 ~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~ 485 (538)
T KOG0252|consen 406 IGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAG 485 (538)
T ss_pred CceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHH
Confidence 33455566677778888888888899999999999999999999999999999999999888 667 788888888
Q ss_pred HHHHHHHHhheeccCCCCCCHHHHHhhh
Q psy13784 359 VAAIGTAHVLAYLPETKGKSLEEIIKGF 386 (388)
Q Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (388)
++.++.+. .+++||++++++||++++.
T Consensus 486 ~~~~gi~~-T~l~pEtk~~~leei~~e~ 512 (538)
T KOG0252|consen 486 CMLLGILF-TLLIPETKGKSLEEISNEE 512 (538)
T ss_pred HHHHhHhe-eEEeecccccCHHHhcChh
Confidence 88877764 5677899999999986553
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.2e-30 Score=228.88 Aligned_cols=308 Identities=13% Similarity=0.097 Sum_probs=221.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+..+.+++.+++++++|++.+++.|++.|++.+..++.....+.| ++| ++|+++.++...+.++
T Consensus 62 ~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~ 137 (377)
T TIGR00890 62 ADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVK---WFP-DKRGLASGIIIGGYGL 137 (377)
T ss_pred HHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHH---HcC-cccHHHHHHHHHhcch
Confidence 599999999999999999999999999999999999999999999888888888888 776 6799999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..+++.+...+ +||+.|++.+++.++..+..+++++|+|+.. .+++ .
T Consensus 138 g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---------------------~---- 189 (377)
T TIGR00890 138 GSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPPGQL---IKTN---------------------I---- 189 (377)
T ss_pred hHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCchhc---cccC---------------------c----
Confidence 988765555444 8999999999998888777777566654210 0000 0
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHh
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVIS 236 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~ 236 (388)
+.+.++.+.++.++++..+....... . ..........+.+.+.++.|.+..+.+.......+...+++++
T Consensus 190 -----~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (377)
T TIGR00890 190 -----EVSVKDYTVWEMLRTPQFWVLYLSFF-L----NAVSGLLLIGLYKPYGQSLGLSDGFLVLAVSISSIFNGGGRPF 259 (377)
T ss_pred -----ccchhhhhHHHHHcCccHHHHHHHHH-H----HhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 00001123345566655442221111 1 1111233344555566777887777888888999999999999
Q ss_pred hheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCch
Q psy13784 237 ISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPM 316 (388)
Q Consensus 237 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 316 (388)
.+++.||++||+.+..+.....++.+.+... . ............+. +.......+....+..|.+|+
T Consensus 260 ~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~---------~~~~~~~~~~~~~~-g~~~g~~~~~~~~~~~~~~~~ 326 (377)
T TIGR00890 260 LGALSDKIGRQKTMSIVFGISAVGMAAMLFI---P---------MLNDVLFLATVALV-FFTWGGTISLFPSLVSDIFGP 326 (377)
T ss_pred HHHHHHHHhhhhhhhHHHHHHHHHHHHHHHc---c---------cchhHHHHHHHHHH-HHHhccchhccHHHHHHHhhh
Confidence 9999999999999888877777776655431 0 01111121222222 222223334555788999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHH
Q psy13784 317 EVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIG 363 (388)
Q Consensus 317 ~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~ 363 (388)
++|+++.|+.+....+|+.++|.+.|.+.+..| ...+.+.+++.+++
T Consensus 327 ~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~ 374 (377)
T TIGR00890 327 ANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS 374 (377)
T ss_pred hhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 999999999999999999999999999999988 66666666555543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-29 Score=229.60 Aligned_cols=341 Identities=13% Similarity=0.088 Sum_probs=224.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh----cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYS----LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATT 76 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~ 76 (388)
+||+|||+++..+.++.+++.++.++. ++++.+.+.|++.|++.+..++.....+.| ++|+++|++++++.+.
T Consensus 85 ~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~---~~~~~~rg~~~~~~~~ 161 (438)
T TIGR00712 85 SDRSNPRVFLPAGLILSAAVMLLMGFVPWATSSIAIMFVLLFLNGWFQGMGWPPCGRTMVH---WWSQSERGTIVSIWNC 161 (438)
T ss_pred hhccCCceehHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhcchHHHHHHHHH---hcCcccchhHHHHHHH
Confidence 599999999999999999998887765 467788899999999999999988999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHhHH-----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCC
Q psy13784 77 ARAFGLLQVYFMGSLL-----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPT 151 (388)
Q Consensus 77 ~~~~G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (388)
+.++|..+++.+.... +||..|++.+++.++..+..++++||+|+....++ .+ + .+. + .+.
T Consensus 162 ~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~~--~----~~~--~-~~~--- 227 (438)
T TIGR00712 162 AHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQSCGLPP--IE--E----YRN--D-YPD--- 227 (438)
T ss_pred HHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHhcCCCC--ch--h----ccc--c-ccc---
Confidence 9999999887765442 89999999999988877777777899875321000 00 0 000 0 000
Q ss_pred ccccccccccccccccch-hhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHH
Q psy13784 152 SRGDAESGAQGEQMSTTN-IFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNPYFITVIGGLI 229 (388)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~ 229 (388)
... ++ .+++.+.++. ....++++..+...+... +.....+....|.|.++++ .|+++.+.+....+..+.
T Consensus 228 ~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~ 299 (438)
T TIGR00712 228 DYN--EK-AEQELTAKEIFMQYVLPNKLLWYIAIANV-----FVYLLRYGVLDWSPTYLKEVKHFALDKSSWAYFLYEYA 299 (438)
T ss_pred ccc--cc-cccccchHHHHHHHHccCchHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHccCCChhhHHHHHHHHHHH
Confidence 000 00 0000001111 123455554443222211 1222345667788999975 588888899999999999
Q ss_pred HHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhh
Q psy13784 230 IFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLM 309 (388)
Q Consensus 230 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (388)
+++++++.+++.||+++++....+........+........ . ..+.+...... +..+....+........
T Consensus 300 ~~ig~~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--------~~~~~~~~~~~-~~~g~~~~~~~~~~~~~ 369 (438)
T TIGR00712 300 GIPGTLLCGWMSDKVFKGNRGATGVFFMTLVTIAVIVYWMN-P--------AGNPLVDMICM-IVIGFLIYGPVMLIGLH 369 (438)
T ss_pred HHHHHHHHHHHHHHhccCcccHHHHHHHHHHHHHHHHHHhc-C--------CCchHHHHHHH-HHHHHHHccHHHHHHHH
Confidence 99999999999999965432222322222221111111111 1 01122221111 11222112211122245
Q ss_pred hccCCchhhHHHHHHHHHHHHHHHH-HHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheeccCCCC
Q psy13784 310 LGEIFPMEVKGVAAGLATCLAYIFG-FFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPETKG 376 (388)
Q Consensus 310 ~~~~~p~~~r~~~~~~~~~~~~~g~-~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (388)
..|.+|++.|+++.|+.+...++++ .++|.+.|.+.|..| ...+.+..++.+++.+.....++|.|+
T Consensus 370 ~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (438)
T TIGR00712 370 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGEKR 438 (438)
T ss_pred HHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 7799999999999999999988875 689999999999988 677777777777777777777777653
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=220.05 Aligned_cols=304 Identities=15% Similarity=0.155 Sum_probs=211.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+..+.+++.+++++++|++.+++.|+++|++.+...+....++.| +.++++|++++++...+..+
T Consensus 62 ~dr~g~r~~~~~~~~~~~~~~~l~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 138 (382)
T PRK10091 62 SSRYSLKHILLFLVALCVIGNAMFTLSSSYLMLAIGRLVSGFPHGAFFGVGAIVLSK---IIKPGKVTAAVAGMVSGMTV 138 (382)
T ss_pred HccCccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH---hCChHHhhHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999988888888999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..+++.+++.+ +||+.|++.+++.++..+..++.+||.++ +++ ++
T Consensus 139 g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~~----~~~-~~------------------------- 188 (382)
T PRK10091 139 ANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIRD----EAK-GG------------------------- 188 (382)
T ss_pred HHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCCc----ccc-cC-------------------------
Confidence 999999988777 89999999999887776666666787542 000 00
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHH
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVI 235 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~ 235 (388)
.++..+.++++..+.... .......+......|.+.+++ ..|+++.+.+......+++.+++++
T Consensus 189 ----------~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ig~~ 253 (382)
T PRK10091 189 ----------LREQFHFLRSPAPWLIFA-----ATMFGNAGVFAWFSYIKPYMMFISGFSETSMTFIMMLVGLGMVLGNL 253 (382)
T ss_pred ----------HHHHHHHhcChHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhH
Confidence 000122344443222111 111111222333445555554 5699888999999999999999999
Q ss_pred hhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCc
Q psy13784 236 SISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFP 315 (388)
Q Consensus 236 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 315 (388)
+.+++.||+++|+.+..+..+..++.+++... .+..+.......+...+......+.......+..|
T Consensus 254 ~~g~l~~r~~~~~~~~~~~~~~~i~~~~~~~~-------------~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 320 (382)
T PRK10091 254 LSGRLSGRYSPLRIAAVTDFIIVLALLMLFFF-------------GGMKTASLIFAFICCAGLFALSAPLQILLLQNAKG 320 (382)
T ss_pred HHheeccccCchhHHHHHHHHHHHHHHHHHHH-------------HhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCCc
Confidence 99999999999998888777766666544321 11222222222222222222222223234455555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc-c-cchhhHHHHHHHHHHHHh
Q psy13784 316 MEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL-G-NGIFFFYGLVAAIGTAHV 367 (388)
Q Consensus 316 ~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g-~~~~~~~~~~~~~~~~~~ 367 (388)
++.++.+ ..+...++|..+||.+.|.+.|.. + ...+...++++.+.....
T Consensus 321 ~~~~~~~--~~~~~~~~g~~~Gp~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 372 (382)
T PRK10091 321 GELLGAA--GGQIAFNLGSAIGAYCGGMMLTLGLAYNYVALPAALLSFAAMSSL 372 (382)
T ss_pred chHHHHH--HHHHHHHHHHHHHHHHhHHHHHcccCcchHHHHHHHHHHHHHHHH
Confidence 5555554 346778899999999999999975 4 555555555555444433
|
|
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.5e-29 Score=224.36 Aligned_cols=318 Identities=17% Similarity=0.199 Sum_probs=222.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+.+..+..+.+++.++..++++++.+++.|++.|++.+...+...+++.| ++|+++|++++++...+..+
T Consensus 76 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~~~ 152 (398)
T TIGR00895 76 ADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSE---YAPKRFRGTAVGLMFCGYPI 152 (398)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHH---HcCHHhhchhHhhHhhHHHH
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..+++.+++.+ +||+.|++.++...+..++.+.++||+|++..++ +.++..+..++.......+.+ . +.
T Consensus 153 g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~--~~ 226 (398)
T TIGR00895 153 GAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFLVSK-RPETVRRIVNAIAPQMQAEAQ---S--AL 226 (398)
T ss_pred HHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHHHhc-CHHHHHHHHHHHHHhcccccc---c--cc
Confidence 999999998877 9999999988777776666666699998766544 333333333332221111110 0 00
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHh
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVIS 236 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~ 236 (388)
++.+ ++++..++..+.+++++..+........ .+...........+.|.+.++.|+++.+.+.......++.+++.++
T Consensus 227 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 304 (398)
T TIGR00895 227 PEQK-ATQGTKRSVFKALFQGKTARITVLLWLL-YFMLLVGVYFLTNWLPKLMVELGFSLSLAATGGALFNFGGVIGSII 304 (398)
T ss_pred cccc-cccchhhHHHHHHhcchhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0000 1111122223322222222222222222 2233344556677888777788998888999999999999999999
Q ss_pred hheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCch
Q psy13784 237 ISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPM 316 (388)
Q Consensus 237 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 316 (388)
.+++.||+++|+.... ..+..+...++.. .. .+.+......++...+.+ ...+..+++..|.+|+
T Consensus 305 ~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~--~~-----------~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~ 369 (398)
T TIGR00895 305 FGWLADRLGPRVTALL-LLLGAVFAVLVGS--TL-----------FSPTLLLLLGAIAGFFVN-GGQSGLYALMALFYPT 369 (398)
T ss_pred HHHHHhhcchHHHHHH-HHHHHHHHHHHHH--Hh-----------hCHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcCCH
Confidence 9999999999844433 3333332222211 00 122333333333333333 3346677899999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy13784 317 EVKGVAAGLATCLAYIFGFFAVKTWPTL 344 (388)
Q Consensus 317 ~~r~~~~~~~~~~~~~g~~~~~~~~g~l 344 (388)
+.|+++.|+.+....+|..++|.+.|.+
T Consensus 370 ~~~g~~~g~~~~~~~~g~~~g~~~~G~l 397 (398)
T TIGR00895 370 AIRATGVGWAIGIGRLGAIIGPILAGYL 397 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence 9999999999999999999999999875
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-28 Score=216.96 Aligned_cols=300 Identities=15% Similarity=0.155 Sum_probs=212.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+..+.+++.+++.+++|++.+++.|+++|++.+...+...+++.| ++|+++|+++.++...+.++
T Consensus 79 ~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~---~~~~~~~~~a~~~~~~~~~~ 155 (394)
T PRK10213 79 IQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMR---LVPPRTVPKALSVIFGAVSI 155 (394)
T ss_pred hcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHH---HcCHhHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..++|.+++.+ +||+.|++.+++.++..+......||+|+. + +
T Consensus 156 g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~~-----~-~-------------------------- 203 (394)
T PRK10213 156 ALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPGE-----P-S-------------------------- 203 (394)
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCcc-----c-c--------------------------
Confidence 999999999888 999999998887776655555446765420 0 0
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHcCCCCCcHHHHHHHHHHHHHHHHH
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAY-MTDFVRSSGFHLLNPYFITVIGGLIIFASVI 235 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~ 235 (388)
+..++.++.+++|..+...+..+ . ..........+ .|.+.++.|+++.+.+......+++.+++.+
T Consensus 204 --------~~~~~~~~~l~~~~~~~~~~~~~-~----~~~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~iig~~ 270 (394)
T PRK10213 204 --------HQKQNTFRLLQRPGVMAGMIAIF-M----SFAGQFAFFTYIRPVYMNLAGFGVDGLTLVLLSFGIASFVGTS 270 (394)
T ss_pred --------cchhHHHHHhcCHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHH
Confidence 00012244555555443322211 1 11122333344 4777777799888889999999999999999
Q ss_pred hhheeecccCCchHHHHhhHH-HHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCC
Q psy13784 236 SISFILPHTGVKPLSAASGMG-IALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIF 314 (388)
Q Consensus 236 ~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (388)
+.+++.||.+++ .+...... .....++... .+..+.......+.+.++ ....+...+.+.+..
T Consensus 271 ~~~~l~~r~~~~-~l~~~~~~~~~~~~~l~~~--------------~~~~~~~~~~~~l~G~~~-~~~~~~~~~~~~~~~ 334 (394)
T PRK10213 271 LSSFILKRSVKL-ALAGAPLVLAVSALVLTLW--------------GSDKIVATGVAIIWGLTF-ALVPVGWSTWITRSL 334 (394)
T ss_pred HHHHHHhccchh-HHHHHHHHHHHHHHHHHHH--------------hhhHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHC
Confidence 999999996444 33333333 2222232222 112233333333333333 233355555777777
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHH
Q psy13784 315 PMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTA 365 (388)
Q Consensus 315 p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~ 365 (388)
|+ +++...+......++|..+||.+.|.+.|..| ...+...+.+..+..+
T Consensus 335 ~~-~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~~g~~~~~~~~~~~~~~~~~ 385 (394)
T PRK10213 335 AD-QAEKAGSIQVAVIQLANTCGAAIGGYALDNIGLTSPLMLSGTLMLLTAL 385 (394)
T ss_pred cc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhhHHHHHHHHHHHHHH
Confidence 74 46677788888889999999999999999988 5555555555444443
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-28 Score=220.70 Aligned_cols=305 Identities=20% Similarity=0.241 Sum_probs=213.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchh--------HHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTIT--------NLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLAT 72 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~ 72 (388)
+||+|||+++..+.++..++.++++++++++ .+++.|+++|++.+...+....++.| +.++++|++..+
T Consensus 59 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~---~~~~~~r~~~~~ 135 (394)
T TIGR00883 59 GDRIGRKKTLVITLLMMGIGTLLIGLLPSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAE---YAPPGKRGFYGS 135 (394)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHhhCCChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhh---cCCcccchHHHH
Confidence 5999999999999999999999999999876 48899999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHH------------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhc
Q psy13784 73 WATTARAFGLLQVYFMGSLL------------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLR 140 (388)
Q Consensus 73 ~~~~~~~~G~~~~~~~~~~~------------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~ 140 (388)
+...+..+|.++++.++..+ +||+.|++.+++.++....... .||+|++..++++.
T Consensus 136 ~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~----------- 203 (394)
T TIGR00883 136 FQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRN-LEETPVFEKAQEKH----------- 203 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHh-cCCChhHHHHHhcc-----------
Confidence 99999999999998876432 7999999887776665444333 77766432111000
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcH
Q psy13784 141 LGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNP 219 (388)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~ 219 (388)
++.+.+.++.+++++ +...... ...+...........+.|.+.+ +.|.++.+.
T Consensus 204 -----------------------~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 257 (394)
T TIGR00883 204 -----------------------KKKRGPIRETLTKHR--KPFLLGL-GLVIATTTTFYLITTYLPTYLTQTLGLSANSA 257 (394)
T ss_pred -----------------------ccccCCHHHHHHhch--HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCCChhHH
Confidence 011122344444432 1122222 2222233334566778888884 568888888
Q ss_pred HHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHH-HHHHHHhhcccCccccccccccchHHHHHHHHHHHHH
Q psy13784 220 YFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSM-LVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVAS 298 (388)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (388)
+.......+...++.++.+++.||+|||+.+.....+..+.. ...... ... .+.+.......+...+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~--~~~---------~~~~~~~~~~~~~g~~~ 326 (394)
T TIGR00883 258 LLVLMLSLILFFITIPLSGALSDRIGRRPVLIIFTVLAALLAVPLLMAL--LDS---------GSFTLFFFLVLGLALIG 326 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH--hcC---------CchHHHHHHHHHHHHHH
Confidence 888889999999999999999999999997765544433322 222111 100 12222223323333333
Q ss_pred HhccccchhhhhccCCchhhHHHHHHHHH-HHHHHHHHHHHHHhHHHHhhcc-cchhhHHHH
Q psy13784 299 SVGFLPIPYLMLGEIFPMEVKGVAAGLAT-CLAYIFGFFAVKTWPTLHLALG-NGIFFFYGL 358 (388)
Q Consensus 299 ~~~~~~~~~~~~~~~~p~~~r~~~~~~~~-~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~ 358 (388)
....+..+++..|.+|++.|+++.++.. ....+|..++|.+.|.+.|+.| +........
T Consensus 327 -~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~ 387 (394)
T TIGR00883 327 -GMYTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLA 387 (394)
T ss_pred -HHHhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHH
Confidence 2334666789999999999999999854 4456788899999999999988 444444333
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-28 Score=218.89 Aligned_cols=296 Identities=15% Similarity=0.079 Sum_probs=215.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhc-----chhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSL-----TITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWAT 75 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~ 75 (388)
+||+|||+++..+..+.+++.++..+++ +++.+++.|+++|++.+...+...+++.| +.|+++|+++.++.+
T Consensus 58 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 134 (365)
T TIGR00900 58 ADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPD---LVPEEQLTQANSLSQ 134 (365)
T ss_pred HHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHhHHH
Confidence 5999999999999999999999888887 99999999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhc-cCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCC
Q psy13784 76 TARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFI-IPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEP 150 (388)
Q Consensus 76 ~~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~-~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (388)
.+..+|.++++.+++.+ +||+.|++.++..++..+..+.. .||.++ +++.+..+
T Consensus 135 ~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~----------------- 193 (365)
T TIGR00900 135 AVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLIVSVRIPELAA----SEIQALSN----------------- 193 (365)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhcccccCCC----ccccccch-----------------
Confidence 99999999999998887 99999999887776665544442 222211 00000000
Q ss_pred CccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHH-HHHHHHHHH-cCCCCCcHHHHHHHHHH
Q psy13784 151 TSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVIL-AYMTDFVRS-SGFHLLNPYFITVIGGL 228 (388)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~g~s~~~~~~~~~~~~~ 228 (388)
+..++.++..++.+++|..+........... ...... .+.|.+.++ .|.++.+.+.......+
T Consensus 194 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (365)
T TIGR00900 194 ----------AVLRDTREGIKFVLKNPLLRTLLLLALLFNL-----VFAPAIVALFPYVQSKYLGRGSTHYGWVLAAFGL 258 (365)
T ss_pred ----------hHHHHHHhHHHHHHcCcHHHHHHHHHHHHHH-----HHHHHHHHHhHHHHHHHhCCchHHHHHHHHHHHH
Confidence 0000111233445555544432222221111 122233 677787775 68888889999999999
Q ss_pred HHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhh
Q psy13784 229 IIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYL 308 (388)
Q Consensus 229 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (388)
+.+++.++.+++.||.+||+.+..+....+++...+... .++.+.......+...+. ....+....
T Consensus 259 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~g~~~-~~~~~~~~~ 324 (365)
T TIGR00900 259 GALLGALLLGLLGRYFKRMALMTGAIFVIGLAILVVGLT-------------PPNFPLFLVLWFAIGVGY-GPINVPQGT 324 (365)
T ss_pred HHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHhh-------------chhHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 999999999999999999998877766666665555431 111233333333333333 334466778
Q ss_pred hhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 309 MLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 309 ~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
+..|..|++.|+++.|+.+...+++..++|.+.|.+.|..|
T Consensus 325 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~~g 365 (365)
T TIGR00900 325 LLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADHLG 365 (365)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999988764
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-28 Score=227.16 Aligned_cols=339 Identities=13% Similarity=0.108 Sum_probs=217.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+.++.+++.+++++++|++.+++.|++.|++.+...+....++.| ++|+++|+++.++...+..+
T Consensus 79 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~~~ 155 (496)
T PRK03893 79 GDRYGRRLAMVISIVLFSVGTLACGFAPGYWTLFIARLVIGMGMAGEYGSSATYVIE---SWPKHLRNKASGFLISGFSI 155 (496)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..+++.++..+ +||+.|++..+..++.. .....+||++++..++++.++.++..+.....+..... .....
T Consensus 156 g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 231 (496)
T PRK03893 156 GAVVAAQVYSLVVPVWGWRALFFIGILPIIFAL-WLRKNLPEAEDWKEKHAGKAPVRTMVDILYRGEHRIIN---ILLTL 231 (496)
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH-HHHHhCCCchhhhhhccccccchhHHHHHhcchhHHHH---HHHHH
Confidence 999999998877 89999988655544433 33334788766533222111111111100000000000 00000
Q ss_pred c---ccc-cccccccchhh--------------hhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCC
Q psy13784 157 E---SGA-QGEQMSTTNIF--------------KEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLL 217 (388)
Q Consensus 157 ~---~~~-~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~ 217 (388)
. ... .-.......+. ...+.+..+++.........+...........+.|.+++ +.|++..
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~l~~~~g~~~~ 311 (496)
T PRK03893 232 AAAAALWFCFAGNLQNAAIVAVLGLLCAAIFISFMVQSSGKRWPTGVMLMVVVLFAFLYSWPIQALLPTYLKTDLGYDPH 311 (496)
T ss_pred HHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHhccchHHHHHHHHHHhhcCCCHH
Confidence 0 000 00000000000 000000001111111111111111111234567888885 7799989
Q ss_pred cHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHH
Q psy13784 218 NPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVA 297 (388)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (388)
+.+.......++.+++.++.|++.||++||+.+..+..+..+..+.+.. .. ................
T Consensus 312 ~~g~~~~~~~~~~~~g~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~~----------~~~~~~~~~~~~~~~~ 378 (496)
T PRK03893 312 TVANVLFFSGFGAAVGCCVGGFLGDWLGTRKAYVCSLLISQLLIIPVFA---IG----------GANVWVLGLLLFFQQM 378 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhh---cc----------ccHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999887766555544433322 00 1112222222222223
Q ss_pred HHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHH
Q psy13784 298 SSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLV 359 (388)
Q Consensus 298 ~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~ 359 (388)
...+..+....+..|.+|++.|++++|+.+....+|+.++|.+.|.+.|..| ...+...++.
T Consensus 379 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~ 441 (496)
T PRK03893 379 LGQGISGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS 441 (496)
T ss_pred HhcccchhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence 3333445556788999999999999999999999999999999999999988 4455444433
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-28 Score=225.07 Aligned_cols=325 Identities=11% Similarity=-0.005 Sum_probs=224.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhccccccc-CchhhhHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQ-NTKLRGSLATWATTARA 79 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~-~~~~r~~~~~~~~~~~~ 79 (388)
+||+|||++++.+..++.++++++++++|++.++++|+++|+|.+...+.....+.+ .+ |+++|++++++......
T Consensus 65 ~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~---~~~~~~~r~~~~g~~~~~~~ 141 (495)
T PRK14995 65 GDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRA---TFTEEKQRNMALGVWAAVGS 141 (495)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HcCCHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999988887777766 55 78999999999999999
Q ss_pred HHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHH---------HHhcCCCCCC
Q psy13784 80 FGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAA---------KRLRLGPPSN 146 (388)
Q Consensus 80 ~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~---------~~~~~~~~~~ 146 (388)
+|..+||.+++.+ +||+.|++...+.++..++..+++||+|+. ++++.|...... ..........
T Consensus 142 ~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~~--~~~~~d~~g~~~~~~~~~~l~~~~~~~~~~~ 219 (495)
T PRK14995 142 GGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAGR--RDQPLNLGHALMLIVAILLLVYSAKTALKGF 219 (495)
T ss_pred HHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCCChHhHHHHHHHHHHHHHHHHhccccC
Confidence 9999999999988 999999999888888777777778887642 111122111100 0011000000
Q ss_pred CCCCCcccc---------ccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCC
Q psy13784 147 QTEPTSRGD---------AESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHL 216 (388)
Q Consensus 147 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~ 216 (388)
......... .-...+.+..++.-..+.++++.+.......+ ...........+.|.+++. .|+++
T Consensus 220 ~~~~~~~~~~~~~~~~l~~f~~~e~~~~~p~~~~~lf~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~lq~v~g~s~ 294 (495)
T PRK14995 220 LSLWVTSLTLLTGALLLGLFIRTQLAASRPMIDMRLFTHRIILSGVVMAM-----TAMITLVGFELLMAQELQFVHGLSP 294 (495)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcCHHHhCCcccHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 000000000 00000000111111245666665443222222 2222245566788888874 59999
Q ss_pred CcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHH
Q psy13784 217 LNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLV 296 (388)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (388)
.+++.......++..++.++.|++.||+|+|+.+..+..+..++...+... .. ....+.......+.+.
T Consensus 295 ~~ag~~~~~~~~~~~~~~~~~g~l~~r~g~~~~~~~g~~~~~~~~~~l~~~---~~--------~~~~~~~~~~~~l~G~ 363 (495)
T PRK14995 295 LEAGMFMLPVMVASGFSGPIAGILVSRLGLRLVATGGMALSALSFYGLAMT---DF--------STQQWQAWGLMALLGF 363 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHh---cC--------CCchHHHHHHHHHHHH
Confidence 999999999999999999999999999999998887777776666555331 11 0122222333333333
Q ss_pred HHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy13784 297 ASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA 347 (388)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 347 (388)
+.+.. .+.......+..|+++++.+.++.++..++|+.+|+.+.|.+.+.
T Consensus 364 g~g~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lG~~~G~ai~g~i~~~ 413 (495)
T PRK14995 364 SAASA-LLASTSAIMAAAPPEKAAAAGAIETMAYELGAGLGIAIFGLLLSR 413 (495)
T ss_pred hHHHH-HHHHHHHHHhcCCHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333 344556778889999999999999999999999999999998764
|
|
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=225.05 Aligned_cols=330 Identities=13% Similarity=0.096 Sum_probs=220.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYS--LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTAR 78 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~ 78 (388)
+||+|||+++..+.++++++.+++.++ .+++.+++.|+++|++.+...+....++.| ++|+++|++++++...+.
T Consensus 100 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~~G~~~~~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~ 176 (465)
T TIGR00894 100 AGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIALVVFCRVIQGLAQGSVSPATHKIIVK---WAPPKERSRLLGMSTSGF 176 (465)
T ss_pred HHHhCcchhhHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHhcccchhhHHHHHHh---cCCHHHHHHHHHHHHHHH
Confidence 599999999999999999999887654 668899999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhHH-----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcc
Q psy13784 79 AFGLLQVYFMGSLL-----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSR 153 (388)
Q Consensus 79 ~~G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (388)
.+|.++++.+++.+ +||+.|++.+++.++..++.+++.+|+|+.... ..++.++..++... +
T Consensus 177 ~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~~~~~--~~~~~~~~i~~~~~---~-------- 243 (465)
T TIGR00894 177 QLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPSIHPC--ISKFEKKYINSSLQ---G-------- 243 (465)
T ss_pred HHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcccCCC--CCHHHHHHHHhhcc---c--------
Confidence 99999999998776 799999999999888877777767888752111 11111111111000 0
Q ss_pred ccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHH
Q psy13784 154 GDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFA 232 (388)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~ 232 (388)
++++++.+..+++.++++..+. .....++.....+.+..|.|.+++ ..|++..+.+.......++..+
T Consensus 244 ------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~lp~~l~~~~g~s~~~~g~~~~~~~~~~~i 312 (465)
T TIGR00894 244 ------QKGSTRQSLPIKAIPKSLPVWA-----IWFAIFGHFWLYTILPTYLPTFISWVLRVSGKENGLLSSLPYLFAWL 312 (465)
T ss_pred ------ccCCCCCCCCHHHHhcCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHhHHHHHHHHHHHHH
Confidence 0000111234566666654332 223333344445677889999986 4699888999999999999999
Q ss_pred HHHhhheeecccCCchHHH---HhhHHHHHHH---HHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccch
Q psy13784 233 SVISISFILPHTGVKPLSA---ASGMGIALSM---LVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIP 306 (388)
Q Consensus 233 ~~~~~g~l~d~~g~~~~~~---~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (388)
+.+++|+++||+++|+... .......++. ....+..... ....+..+....+.. +......+..
T Consensus 313 ~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~-~~~~~~~~~~ 382 (465)
T TIGR00894 313 CSIFAGYLADFLKSSKTLSLTAARKIFNGIGGLGPGIFAYALPYL---------SAAFYLTIIILTLAN-AVSSGPLAGV 382 (465)
T ss_pred HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHc---------CCchHHHHHHHHHHH-HHhhhhhhhh
Confidence 9999999999876442211 0011111111 1111100000 011222222222222 2222222334
Q ss_pred hhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc--c--cchhhHHHHHHHHHHHHhh
Q psy13784 307 YLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL--G--NGIFFFYGLVAAIGTAHVL 368 (388)
Q Consensus 307 ~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~--g--~~~~~~~~~~~~~~~~~~~ 368 (388)
+....|..|+ .+|.+.|+.+..+.+++.++|.+.|.+.+.. + ...+.+.++..+++.++..
T Consensus 383 ~~~~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~ 447 (465)
T TIGR00894 383 LINSLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYL 447 (465)
T ss_pred hhchhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHee
Confidence 3455677665 7999999999999999999999999987754 3 4556666666666655443
|
|
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-27 Score=215.70 Aligned_cols=307 Identities=17% Similarity=0.164 Sum_probs=210.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh--------cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYS--------LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLAT 72 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~ 72 (388)
+||+|||++++.+.++.+++.+.+.++ .+++.+++.|+++|++.+...+....++.| +.|+++|+++++
T Consensus 75 ~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~---~~~~~~r~~~~~ 151 (399)
T PRK05122 75 ADTLGPKKAVVFGLCGCALSGLLYLLAGLLAAWPVLSLLLLLLGRLLLGIGESLAGTGSILWGIG---RVGALHTGRVIS 151 (399)
T ss_pred HhccCCcchHHHHHHHHHHHHHHHHHhhhhhccchhHHHHHHHHHHHHHhhHHhhcchHHHHHHh---hcChhhhccchh
Confidence 599999999999999988877766554 256789999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCC
Q psy13784 73 WATTARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQT 148 (388)
Q Consensus 73 ~~~~~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (388)
+...+..+|.++++.+++.+ +||..+++..+..++..+.... .||+++ ++
T Consensus 152 ~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~-----~~-------------------- 205 (399)
T PRK05122 152 WNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARP-RPAVPP-----VK-------------------- 205 (399)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhc-CCCCCC-----CC--------------------
Confidence 99999999999999988877 8999988776665443332221 232210 00
Q ss_pred CCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q psy13784 149 EPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGL 228 (388)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 228 (388)
+++.+..+.+++ .+....... . ....+.....+.+.++++.|+ .+.+.......+
T Consensus 206 ----------------~~~~~~~~~~~~--~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 260 (399)
T PRK05122 206 ----------------GERLPFRRVLGR--VWPYGMGLA-L----ASIGFGTIATFITLYYAARGW--DGAALALTLFGV 260 (399)
T ss_pred ----------------ccchhHHHHHHH--HHHHHHHHH-H----HHHHHHHHHHHHHHHHHHccc--ccchHHHHHHHH
Confidence 000011122211 111111111 1 111234455667777766666 344556677788
Q ss_pred HHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhh
Q psy13784 229 IIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYL 308 (388)
Q Consensus 229 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (388)
+.+++.++.+++.||+++|+.+..+..+..++...+... ++.+.......+.+.+.. ...+....
T Consensus 261 ~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~G~~~~-~~~~~~~~ 325 (399)
T PRK05122 261 AFVGARLLFGNLINRLGGLRVAIVSLLVEILGLLLLWLA--------------PSPWMALIGAALTGFGFS-LVFPALGV 325 (399)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHHHHHHhHH-HHHHHHHH
Confidence 889999999999999999998887777777766655431 122333333333333333 23345446
Q ss_pred hhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheeccCCCCC
Q psy13784 309 MLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPETKGK 377 (388)
Q Consensus 309 ~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (388)
...|..|++.|+++.|+.+...++|..+++.+.|.+.+..| ...+...+++.+++.++.. ..+++++|
T Consensus 326 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 394 (399)
T PRK05122 326 EAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTW-LLYRRAPR 394 (399)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHH-Hhcccccc
Confidence 67788999999999999999999999999999999999988 6677777776666655444 34444433
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=221.79 Aligned_cols=315 Identities=15% Similarity=0.119 Sum_probs=212.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+.++.+++.+++.++++++.+++.|++.|++.+...+...+++.| ++|+++|+++.++...+..+
T Consensus 54 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~~~ 130 (379)
T TIGR00881 54 SDRSNPRVFLPIGLILCAIVNLFFGFSTSLWVMAALWALNGIFQGMGWPPCGRTVTK---WFSRSERGTWVSFWNCSHNV 130 (379)
T ss_pred HHhhCCeehhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhccccCCchHHHHHH---hcCHhhheeeEeehhccchh
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHH-HHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcccc
Q psy13784 81 GLLQVY-FMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGD 155 (388)
Q Consensus 81 G~~~~~-~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (388)
|..+++ .++..+ +||+.|++.+++.++..+..+++.||+|+....+++.++ ..++ .+.+
T Consensus 131 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~--~~~~ 194 (379)
T TIGR00881 131 GGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQSCGLPPAEEM--------------PNEE--PDGD 194 (379)
T ss_pred HHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCccccccCccccC--------------cccc--cccc
Confidence 999999 455544 999999999988888777777778887642111000000 0000 0000
Q ss_pred ccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHH
Q psy13784 156 AESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASV 234 (388)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~ 234 (388)
.++.+++.+..+....+.++++..+...+. .+...........+.|.+++ ..|+++.+.+.......++.+++.
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 269 (379)
T TIGR00881 195 AEKKEEELTKKQIFLQYVLLNKVLWYISLG-----YVFVYVVRTGILDWSPLYLTQEKGFSKEKASWAFTLYELGGLVGT 269 (379)
T ss_pred cccccccccchHHHHHHHHhcchHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHcchhH
Confidence 000001111112233445555543322221 12222224556677888876 459988899999999999999999
Q ss_pred HhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCC
Q psy13784 235 ISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIF 314 (388)
Q Consensus 235 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (388)
++.+++.||..+|+...............+....... ....+.... .....+....+..+....+..|.+
T Consensus 270 ~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~ 339 (379)
T TIGR00881 270 LLAGWLSDKLFNGRRGPLAVFFMALIIVSLLVYWLNP---------AANPLMDLI-CLFALGFLVYGPQMLIGVIASELA 339 (379)
T ss_pred HHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHhcCc---------chhHHHHHH-HHHHHHHHHhhhhHHHHHHHHHhc
Confidence 9999999986433222222111111111111111100 011122222 222222233333344557889999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 315 PMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 315 p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
|++.|+++.|+.+...++|+.++|.+.|.+.|..|
T Consensus 340 ~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g 374 (379)
T TIGR00881 340 PKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFG 374 (379)
T ss_pred CcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhc
Confidence 99999999999999999999999999999999887
|
|
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-27 Score=210.80 Aligned_cols=305 Identities=11% Similarity=0.078 Sum_probs=209.6
Q ss_pred CCCCCchhHHH-HHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHH--HHHHHHH
Q psy13784 1 MDKLGRKPAII-LIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSL--ATWATTA 77 (388)
Q Consensus 1 sDr~Grr~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~--~~~~~~~ 77 (388)
+||+||||.++ .+..+..++.+++++++|++.+++.|++.|.+.+...|...++..| +.|+++|++. .+....+
T Consensus 57 ~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~p~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 133 (375)
T TIGR00899 57 SDYQGDRKGLILFCCLLAALACLLFAWNRNYFLLLVLGVLLSSFASTANPQLFALARE---HADRTGREAVMFSSVMRAQ 133 (375)
T ss_pred HhccCCchHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhhhhhhHHHHHHHHHH---HhhhcchhhHHHHHHHHHH
Confidence 59999998765 4566667788888999999999999999998888888888888889 7777777654 5777888
Q ss_pred HHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcc
Q psy13784 78 RAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSR 153 (388)
Q Consensus 78 ~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (388)
.++|..+++.+++.+ +||+.|++.+++.++..+..++++||+|+...+++
T Consensus 134 ~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------- 187 (375)
T TIGR00899 134 ISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRGAPGAL-------------------------- 187 (375)
T ss_pred HhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccCccccc--------------------------
Confidence 889999999888877 89999999999888777777766898764210000
Q ss_pred ccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHH
Q psy13784 154 GDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFA 232 (388)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~ 232 (388)
++.+..+.+++++.+.........+. .......+.|.+++ +.|.++.+.+...........+
T Consensus 188 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 250 (375)
T TIGR00899 188 ------------TRLEVRGLLASRDTRLLFVACTLMWG-----CNILYIINMPLLIIHELGLPDKLAGLMMGTAAGLEIP 250 (375)
T ss_pred ------------CcchhhhhhcCcchHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 00011223444443322222111111 12333445666664 5688888888877777777888
Q ss_pred HHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhcc
Q psy13784 233 SVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGE 312 (388)
Q Consensus 233 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (388)
+.++.+++.||++||+.+..+.....+....+.. .++.+.......+...+.+ ...+....+..|
T Consensus 251 ~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g~~~g-~~~~~~~~~~~~ 315 (375)
T TIGR00899 251 FMLLAGYLIKRFGKRRLMLLAALAGVAFYTGLAA--------------DNSLWALLMLQLLNAIFIG-ILAGIGMLYFQD 315 (375)
T ss_pred HHHhHHHHHHHhcchhHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 8999999999999999887766554444333322 0122222222222222222 233555677888
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHh
Q psy13784 313 IFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHV 367 (388)
Q Consensus 313 ~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 367 (388)
..|++ ++++.++.+...++|..++|.+.|.+.+..| ...+...+++.+++.++.
T Consensus 316 ~~~~~-~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~ 370 (375)
T TIGR00899 316 LMPGR-AGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCL 370 (375)
T ss_pred hCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHH
Confidence 88865 6799999999999999999999999999988 666777666666665543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=214.36 Aligned_cols=303 Identities=14% Similarity=0.101 Sum_probs=214.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+..+.+++.++++++++++.+++.|+++|++.+...+....++.| ++|+++|+++++..+....+
T Consensus 66 ~dr~g~r~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~---~~~~~~r~~~~~~~~~~~~~ 142 (394)
T PRK03699 66 MEIIPLKRQLIFGFALMILAVAGLMFSHSLALFSIAMFVLGVVSGITMSIGTFLITH---VYEGKQRGSRLLFTDSFFSM 142 (394)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHhhHhhccchhHHhhh---hcccchHHHHHHHHHHHHHH
Confidence 499999999999999999999999999999999999999999999999989999999 99999999999999888899
Q ss_pred HHHHHHHHHhHH-----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcccc
Q psy13784 81 GLLQVYFMGSLL-----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGD 155 (388)
Q Consensus 81 G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (388)
|..++|.+.+.+ +||+.|.+.+++.++..++.++ ++.|+. ++.++
T Consensus 143 g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~~~--~~~p~~----~~~~~------------------------ 192 (394)
T PRK03699 143 AGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILTLF--SEFPAL----GKHAP------------------------ 192 (394)
T ss_pred HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHh--cCCccc----cccCc------------------------
Confidence 988888877654 8999999988887766554433 232210 00000
Q ss_pred ccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHH
Q psy13784 156 AESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASV 234 (388)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~ 234 (388)
++ +++.. ++.. ++ . +.......++.......+..|.|.+++ +.|+|+.+.+.......++..+++
T Consensus 193 -~~---~~~~~----~~~~-~~----~-~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~g~s~~~~~~~~~~~~~~~~ig~ 258 (394)
T PRK03699 193 -KA---DKPVA----KEKW-GI----G-VLFLAIAALLYILAQLTFISWVPEYAQKKFGMSLEDAGNLVSNFWMAYMVGM 258 (394)
T ss_pred -cc---cCccc----cccC-Ch----H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHhhHHHHHHHHHHHHHH
Confidence 00 00000 0000 11 1 112222222233334567788999995 569998899999999999999999
Q ss_pred HhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCC
Q psy13784 235 ISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIF 314 (388)
Q Consensus 235 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (388)
++.++++||+++|+.+.....+..+...++.. . .+.+....... ..+....+..+...+...|..
T Consensus 259 ~~~g~l~dr~~~~~~l~~~~~~~~~~~~~~~~---~-----------~~~~~~~~~~~-~~G~~~~~~~~~~~~~~~~~~ 323 (394)
T PRK03699 259 WIFSFIVRFFDLQRILTVLAGLALVLMYLFVN---T-----------DDPSHLLYAIL-GLGFFSSAIYTTIITLGSQQT 323 (394)
T ss_pred HHHHHHHHHhchhhHHHHHHHHHHHHHHHHHH---c-----------CCchHHHHHHH-HHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999887766555554443322 1 11222222222 223333333455556667766
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHH
Q psy13784 315 PMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAH 366 (388)
Q Consensus 315 p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 366 (388)
|.+ ++...+......++|..++|.+.|++.+..| ...++..+++..++.+.
T Consensus 324 ~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~ 375 (394)
T PRK03699 324 KVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVM 375 (394)
T ss_pred cCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHH
Confidence 644 5677888999999999999999999999989 77777777666666543
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4e-27 Score=213.30 Aligned_cols=296 Identities=13% Similarity=0.075 Sum_probs=211.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+..+.+++.+.+.++++++.+++.|+++|++.+...+...+++.| ++|+++|.+..++......+
T Consensus 72 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~ 148 (406)
T PRK15402 72 SDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQE---SFEEADAIKITALMANVALL 148 (406)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHH---HhChhHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999888888999999 99999999999999888888
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..++|.+++.+ +||+.|++.++..++..+..++..||+++... +..
T Consensus 149 ~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-------------------------- 199 (406)
T PRK15402 149 APLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAGRVG---EKL-------------------------- 199 (406)
T ss_pred HHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCcccc---ccc--------------------------
Confidence 999999988776 89999999998888777766665777642100 000
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHH
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVI 235 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~ 235 (388)
+.++..+++++.++++..+...+.... ..........+.|.+++ +.|+++.+.+.......++.+++.+
T Consensus 200 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~~~~~g~~ 269 (406)
T PRK15402 200 -----SLKELGRDYKLVLKNRRFVAGALALGL-----VSLPLLAWIALSPVILISGEQLSSYEYGLLQVPVFGALIAGNL 269 (406)
T ss_pred -----cHHHHHHHHHHHHcCcHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000111234456666654432222111 11112334455676664 5688877778777777788899999
Q ss_pred hhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCc
Q psy13784 236 SISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFP 315 (388)
Q Consensus 236 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 315 (388)
+.+++.||+++|+.+..+.....++...+........ ...+.......+...+.... .+..+..... .+
T Consensus 270 ~~g~l~~r~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~~~~g~g~~~~-~~~~~~~~~~-~~ 338 (406)
T PRK15402 270 TLARLTSRRPLRSLIRMGLWPMVAGLLLAALATVISS---------HAYLWLTAGLSLYAFGIGLA-NAGLYRLTLF-SS 338 (406)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHccc---------ccHHHHHHHHHHHHHHHHHH-hhhHHHHHhh-hc
Confidence 9999999999999888887777776666654221111 11222222333333333322 2333343333 34
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 316 MEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 316 ~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
+++||+..+..+....++..+|+.+.+.+.+..+
T Consensus 339 ~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~~ 372 (406)
T PRK15402 339 DVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGGG 372 (406)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHhcccCCc
Confidence 4789999999999999999999999999888877
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-28 Score=224.83 Aligned_cols=327 Identities=11% Similarity=0.007 Sum_probs=226.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||++++.+..+..++.+++++++|++.+++.|+++|++.+...+...+++.| ++|+++|+++.++...+..+
T Consensus 61 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~---~~~~~~r~~~~~~~~~~~~~ 137 (485)
T TIGR00711 61 AKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLN---IYPPEKRGRAMAIWGLTVLV 137 (485)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHH---------HHhcCCCCCCC
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAA---------KRLRLGPPSNQ 147 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~---------~~~~~~~~~~~ 147 (388)
|..+++.+++.+ +||+.|++.+++.++..++..++.||+++. ++++.|...... ......+..+.
T Consensus 138 g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~d~~g~~l~~~~~~~~~~~~~~~~~~~~ 215 (485)
T TIGR00711 138 APALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKPA--ASENFDFLGLLLLSVGLGSLLYGLSEGPERGW 215 (485)
T ss_pred HhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCcccc--ccCCCcHHHHHHHHHHHHHHHHHHhhCCCCCC
Confidence 999999999887 999999999988888777777767875431 112222111100 00111111110
Q ss_pred CCCCccccc----------cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCC
Q psy13784 148 TEPTSRGDA----------ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHL 216 (388)
Q Consensus 148 ~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~ 216 (388)
.++...... ....+.+++++....+.++++.++...+..+.. ....+....+.|.++++ .|+++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~g~s~ 290 (485)
T TIGR00711 216 FDSNEILILSITGLVAIIAFVVWELTDDNPLVDLRLFKYRNFTIGCVYMSLL-----GLGLYGSFYLLPLYLQQVLGYTA 290 (485)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHcCCCCccCHHHHcCCChHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhcCCCH
Confidence 000000000 000000111111123566666655433222222 22245556778888875 59999
Q ss_pred CcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHH
Q psy13784 217 LNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLV 296 (388)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (388)
.+.+.......++..++.++.+++.||++||+.+..+..+..++...+... ... ....+.......+.+.
T Consensus 291 ~~~g~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~g~~~~~~~~~~~~~~--~~~--------~~~~~~~~~~~~l~g~ 360 (485)
T TIGR00711 291 LQAGLHILPVGLAPMLSSPIAGRMGDKIDPRKLVTIGLILYAVGFYWRAFT--FTP--------DTPFLAIALPQFIRGF 360 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHhcc--CCC--------CCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888877777776665421 111 1122222222233333
Q ss_pred HHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy13784 297 ASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL 348 (388)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 348 (388)
+.+... +.......+..|+++++++.|+.+....+|+.+|+.+.+.+.++.
T Consensus 361 g~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~~ 411 (485)
T TIGR00711 361 GMGCFF-MPLTTIALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTNR 411 (485)
T ss_pred HHHHHH-HHHHHHHHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222 333356677889999999999999999999999999999988753
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-27 Score=217.54 Aligned_cols=326 Identities=14% Similarity=0.105 Sum_probs=222.4
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||++++.+..+.+++.+++.++++++.+++.|+++|++.+...+...+++.| ++|+++|+++.++.....++
T Consensus 69 ~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 145 (471)
T PRK10504 69 ADRVGVRNIFFTAIVLFTLGSLFCALSGTLNELLLARVLQGVGGAMMVPVGRLTVMK---IVPREQYMAAMTFVTLPGQV 145 (471)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHH-------Hhc-CCCCCCCC
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAK-------RLR-LGPPSNQT 148 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~-------~~~-~~~~~~~~ 148 (388)
|..++|.+++.+ +||+.|.+......+..+......|+.+. ++.+.+....... ... ..+.....
T Consensus 146 g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~~---~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (471)
T PRK10504 146 GPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYTM---QTRRFDLSGFLLLAVGMATLTLALDGSKGLGL 222 (471)
T ss_pred HHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCccc---cCCCCChHHHHHHHHHHHHHHHHHhcCCcCCc
Confidence 999999998887 99999999888877776666665666542 1122222211100 000 00000000
Q ss_pred CCCccccc----------cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCC
Q psy13784 149 EPTSRGDA----------ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLL 217 (388)
Q Consensus 149 ~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~ 217 (388)
........ ...++++..++....+.++++.++......++ ..........+.|.+++ ..|.++.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~ 297 (471)
T PRK10504 223 SPLAIAGLVAVGVVALLLYLLHARNNNRALFSLKLFRTRTFSLGLAGSFA-----GRIGSGMLPFMTPVFLQIGLGFSPF 297 (471)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHhcCCCCccCHHHhcccchHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 00000000 00000011111112346677665443222221 22224455667888887 4688888
Q ss_pred cHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHH
Q psy13784 218 NPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVA 297 (388)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (388)
+.+.......++..++..+.+++.||+|+|+.+..+..+..+...++... .. ....+.......+.+.+
T Consensus 298 ~~g~~~~~~~~~~~~~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~---~~--------~~~~~~~~~~~~~~g~~ 366 (471)
T PRK10504 298 HAGLMMIPMVLGSMGMKRIVVQVVNRFGYRRVLVATTLGLALVSLLFMLV---AL--------LGWYYLLPFVLFLQGMV 366 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHHhc---cc--------cccHHHHHHHHHHHHHH
Confidence 88888888888888998999999999999999888877777666555431 10 01112122222222223
Q ss_pred HHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 298 SSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 298 ~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
.+... +.......+..|++.++.+.|+.++...+|..+|+.+.|.+.+..+
T Consensus 367 ~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~~~g 417 (471)
T PRK10504 367 NSTRF-SSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLGLFG 417 (471)
T ss_pred HHHHH-HHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 32222 4455788889999999999999999999999999999999988766
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.96 E-value=1e-26 Score=209.55 Aligned_cols=290 Identities=14% Similarity=0.128 Sum_probs=210.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+.++.+++.+.+.++++++.+++.|++.|++.+...+...+++.| ++|+++|+++.++.+....+
T Consensus 64 ~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 140 (385)
T TIGR00710 64 SDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRD---IYPGEELSRIYSILMPVLAL 140 (385)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..+++.+++.+ +||+.|++.++..++..+..++..||+++.. +.+
T Consensus 141 g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~-------------------------- 190 (385)
T TIGR00710 141 APAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLPYE----ARI-------------------------- 190 (385)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCCCc----ccC--------------------------
Confidence 999999998877 8999999998888877777666677764210 000
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHH
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVI 235 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~ 235 (388)
+.++..++.++.+++++.+...+.... ..........+.|.+++ +.|+++.+.+.......++.+++.+
T Consensus 191 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 260 (385)
T TIGR00710 191 -----QISTYFETFLLLLKSKMFWGYALIYGA-----SFGGFFAFFSGAPFVYIDIMGVSPSVFGLLFALNIIAMIFGGF 260 (385)
T ss_pred -----CHHHHHHHHHHHHcCchhHHHHHHHHH-----HHHHHHHHHHcChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000112234455666654433222211 12223455566677765 6688888899999999999999999
Q ss_pred hhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCc
Q psy13784 236 SISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFP 315 (388)
Q Consensus 236 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 315 (388)
+.+++.||+++|+.+..+.....++.+.+....... ...+..........+.......+.......|..|
T Consensus 261 ~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 330 (385)
T TIGR00710 261 LNGRFIKKWGAKSLLRMGLILFAVSAVLLEITAILG----------LGSWAMIIGPMMFVGIGNSMISSIAMAYALEDFP 330 (385)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHhc----------cchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence 999999999999988877776666665554321111 0112222222222222222233555577778877
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy13784 316 MEVKGVAAGLATCLAYIFGFFAVKTWPTL 344 (388)
Q Consensus 316 ~~~r~~~~~~~~~~~~~g~~~~~~~~g~l 344 (388)
+.++++.++.+.....++.+.+.+.+.+
T Consensus 331 -~~~g~~~~~~~~~~~~~g~i~~~~~~~~ 358 (385)
T TIGR00710 331 -HVAGTASALFGTLRLVLGAIVGYLVSLI 358 (385)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5689999999998887666666666643
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-27 Score=213.05 Aligned_cols=329 Identities=16% Similarity=0.211 Sum_probs=239.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh--cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYS--LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTAR 78 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~ 78 (388)
+||+|-|+++..+.++.++++++..++ .+++.+++.|++||++.|..+|....+..+ |.|++||++..++...+.
T Consensus 97 ~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~~~~~~~~~R~lqGl~~g~~~pa~~~i~~~---W~P~~Ers~~~ail~~g~ 173 (466)
T KOG2532|consen 97 ADKFGARRVFFISGLISALLTLLTPLAASIGFYLLLVLRFLQGLGQGVLFPAIGSILAK---WAPPNERSTFIAILTAGS 173 (466)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHhHHHHhHHHhhhhceeee---ECCHHHHHHHHHHHHHHH
Confidence 489999999999999999999999988 455688999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHHHhHH-----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcc
Q psy13784 79 AFGLLQVYFMGSLL-----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSR 153 (388)
Q Consensus 79 ~~G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (388)
.+|.+++.++++.+ ||+.+|++.++++++..++++++..|+|.. ++.. .+++++++.....++
T Consensus 174 q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~---h~~i--s~~El~~I~~~k~~~------- 241 (466)
T KOG2532|consen 174 QLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPSK---HPNI--SEKELKYIEKGKSEA------- 241 (466)
T ss_pred HHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCccc---CCCC--CHHHHHHHHhccccc-------
Confidence 99999999998888 899999999999999999998888998852 1111 112222222211110
Q ss_pred ccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHHHH
Q psy13784 154 GDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNPYFITVIGGLIIFA 232 (388)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~ 232 (388)
+.++..+.+++++++++..+ ...+..++...+++.+..|.|.|+++ +|++..+.++..++..+...+
T Consensus 242 -------~~~~~~~vP~~~i~ts~~vw-----ai~~~~f~~~~~~~~l~~y~PtY~~~VL~f~v~~~G~~salP~l~~~~ 309 (466)
T KOG2532|consen 242 -------HVKKKPPVPYKAILTSPPVW-----AIWISAFGGNWGFYLLLTYLPTYLKEVLGFDVRETGFLSALPFLAMAI 309 (466)
T ss_pred -------ccCCCCCCCHHHHHcCHHHH-----HHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhhhhHHHHHHHHHHHH
Confidence 01111466888998888644 44455555666788999999999985 599999999999999999999
Q ss_pred HHHhhheeecccCCc--------hH-HHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccc
Q psy13784 233 SVISISFILPHTGVK--------PL-SAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFL 303 (388)
Q Consensus 233 ~~~~~g~l~d~~g~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (388)
..+++|.++||+.+| |. -.++....++.++.+++ .+ ..+.+..+.++.+..+.. +..
T Consensus 310 ~k~~~g~lsD~l~~~~ls~t~~rkifn~i~~~~~ai~l~~l~~---~~---------~~~~~~a~~~l~~~~~~~--g~~ 375 (466)
T KOG2532|consen 310 VKFVAGQLSDRLTFRILSETTVRKIFNTIAFGGPAVFLLVLAF---TS---------DEHRLLAVILLTIAIGLS--GFN 375 (466)
T ss_pred HHHHHHHHHHHHhhccCchHhHHHHHHhHHHHHHHHHHHeeee---cC---------CCcchHHHHHHHHHHHHc--ccc
Confidence 999999999998653 11 12333333333333332 11 112333333333322222 222
Q ss_pred cchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc---c-cchhhHHHHHHHHHHHHhhee
Q psy13784 304 PIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL---G-NGIFFFYGLVAAIGTAHVLAY 370 (388)
Q Consensus 304 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~---g-~~~~~~~~~~~~~~~~~~~~~ 370 (388)
............+++.+..+|+.+....+.++++|.+.|.+.... . ...|++.+++.+++.++..++
T Consensus 376 ~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~~~~~P~~vg~~~~~~t~~eW~~VF~i~a~i~~~~~i~f~~f 446 (466)
T KOG2532|consen 376 ISGFYKNHQDIAPQHAGFVMGIINFVGALAGFIAPLLVGIIVTDNTREEWRIVFLIAAGILIVGNIIFLFF 446 (466)
T ss_pred hhhhHhhhhhccchHHHHHHHHHHHHHHHHHHHHHHheeeEeCCCCHHHHHHHHHHHHHHHHHhchheeEe
Confidence 233222222225567899999999999999999999999988421 2 567777777777777644443
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-26 Score=209.39 Aligned_cols=301 Identities=17% Similarity=0.172 Sum_probs=205.7
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHh--------hcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITY--------SLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLAT 72 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~ 72 (388)
+||+||||+++.+.+...++.+.... .++++.+++.|+++|++.+...+...+++.| +.|+|+|+++++
T Consensus 75 ~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~---~~~~~~r~~a~~ 151 (392)
T PRK12382 75 ADQYGAKRSALQGMLACGLAGLAYLLAAILPVSAPFKFALLVVGRLILGFGESQLLTGALTWGLG---LVGPKHSGKVMS 151 (392)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hCCccccchhhh
Confidence 59999999999998887776543322 3578999999999999999988888899999 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCC
Q psy13784 73 WATTARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQT 148 (388)
Q Consensus 73 ~~~~~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (388)
+.+.+...|..++|.+++.+ +||..+.+..+..++....... .||.++ + + +
T Consensus 152 ~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~-~-~------------------ 206 (392)
T PRK12382 152 WNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGT-VRKVPA----H-A-G------------------ 206 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHh-ccCCCC----C-c-c------------------
Confidence 99999999999999998876 8998877665544333322211 233211 0 0 0
Q ss_pred CCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Q psy13784 149 EPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGL 228 (388)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~ 228 (388)
++.+.++.++ ..+........ ..........+.+.++++.|++ +.+......++
T Consensus 207 -----------------~~~~~~~~~~--~~~~~~~~~~l-----~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 260 (392)
T PRK12382 207 -----------------ERPSLWSVVG--LIWKPGLGLAL-----QGVGFAVIGTFVSLYFASKGWA--MAGFTLTAFGG 260 (392)
T ss_pred -----------------cCchHHHHHH--HHHHhHHHHHH-----HHHHHhHHHHHHHHHHHhcCCc--hhHHHHHHHHH
Confidence 0001111111 11111111111 1112344556777777776764 34556666778
Q ss_pred HHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhh
Q psy13784 229 IIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYL 308 (388)
Q Consensus 229 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (388)
+.++++++.+++.||+++|+.+..+..+..++.+++.. ..+.+.......+...+.. ...+....
T Consensus 261 ~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~g~~~~-~~~~~~~~ 325 (392)
T PRK12382 261 AFVLMRVLFGWMPDRFGGVKVAIVSLLVETVGLLLLWL--------------APTAWVALAGAALTGAGCS-LIFPALGV 325 (392)
T ss_pred HHHHHHHHHHHHHHhcCCCeehHHHHHHHHHHHHHHHH--------------cccHHHHHHHHHHHHHHHH-hHHHHHHH
Confidence 88899999999999999999888887777776665543 0122222233233332222 23355557
Q ss_pred hhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhhee
Q psy13784 309 MLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAY 370 (388)
Q Consensus 309 ~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 370 (388)
...|.+|+++|+++.|+.++..++|..++|.+.|.+.|..| ...+...+++.+++.+..+..
T Consensus 326 ~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 388 (392)
T PRK12382 326 EVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVTILS 388 (392)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHhh
Confidence 77888999999999999999999999999999999999999 677777777666666554433
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=218.59 Aligned_cols=327 Identities=14% Similarity=0.107 Sum_probs=212.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHH-HHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFI-GRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARA 79 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~ 79 (388)
+||+|||++++.+.++.+++.++++++++++.+++ .|+++|++.+...+....++.+ +++ ++|+++.++...+..
T Consensus 78 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~---~~~-~~r~~a~g~~~~~~~ 153 (455)
T TIGR00892 78 VNRFGCRPVVIAGGLLASLGMILASFSSNVIELYLTAGFITGLGLAFNFQPSLTMLGK---YFY-RRRPLANGLAMAGSP 153 (455)
T ss_pred HHHcCchHHHHhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcchhhhhHHHHHHHH---HHH-hhHHHHHHHHHhccc
Confidence 59999999999999999999999999999998875 5799999999877777788889 875 789999999999999
Q ss_pred HHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcccc
Q psy13784 80 FGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGD 155 (388)
Q Consensus 80 ~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (388)
+|..++|.+++.+ +||+.|++.+++.++..+..++..|+.+.. ++.+.++ + +..++. . ...+
T Consensus 154 ~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~-~---------~~~~~~-~-~~~~ 219 (455)
T TIGR00892 154 VFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCGALMRPVGPSQ--RVSKSKS-K---------EGLPPD-G-STKK 219 (455)
T ss_pred HHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhCCCCccc--ccccccc-c---------ccCCCC-C-cccc
Confidence 9999999888776 999999999998876665555534432210 0000000 0 000000 0 0000
Q ss_pred ccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHH
Q psy13784 156 AESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVI 235 (388)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~ 235 (388)
.+.....++..+....+.++++.++..... .+...........+.|.+.++.|++..+.+......+++.+++++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 294 (455)
T TIGR00892 220 LSKKSTAEKINRFLDFSLFTHRGFLVYLSG-----NVIMFLGFFAPIIFLVPYAKDKGVDEYEAAFLLSIIGFVDIFARP 294 (455)
T ss_pred ccccchhhhhhhhcchHHhcCchHHHHHHH-----HHHHHHHccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000000000001111245555544322221 111222234556677888888899989999999999999999999
Q ss_pred hhheeeccc--CCchHHHHhh--HHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhc
Q psy13784 236 SISFILPHT--GVKPLSAASG--MGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLG 311 (388)
Q Consensus 236 ~~g~l~d~~--g~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (388)
+.+++.||. ++|+...... ...+++.+.... ..+.+.......+. +.......+...+...
T Consensus 295 ~~g~l~d~~~~~~~~~~~~~~~~~~~~l~~ll~~~--------------~~~~~~~~i~~~~~-G~~~g~~~~~~~~~~~ 359 (455)
T TIGR00892 295 SCGLIAGLKWIRPHVQYLFSFALLFNGLTHLLCAL--------------AGDYTGLVIYCIFF-GLSFGSVGALLFEVLM 359 (455)
T ss_pred HHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH--------------hchHHHHHHHHHHH-HHHhchHHHHHHHHHH
Confidence 999999974 3333332222 222222222211 01222222323333 3333334456668888
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc--cchhhHHHHHHHHHHH
Q psy13784 312 EIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG--NGIFFFYGLVAAIGTA 365 (388)
Q Consensus 312 ~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~ 365 (388)
|.+|+++++++.|+.+...++|++++|.+.|.+.+..+ ...+++.+++.+++.+
T Consensus 360 ~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 360 DLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL 415 (455)
T ss_pred HHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence 99999999999999999999999999999999999876 4555665555554443
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=205.23 Aligned_cols=313 Identities=12% Similarity=0.082 Sum_probs=221.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYS-----LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWAT 75 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~ 75 (388)
.||+|.|+++..+.++.++.++..+++ +|++.+++.|++.|++ +..++.....+++ |+|+++||+++|+..
T Consensus 94 ~Dr~G~R~v~~~~~ll~~i~~~~~~~a~~~~~~s~~~lli~r~l~Gig-g~~f~~~~~~vs~---wfp~~~rG~A~Gi~~ 169 (462)
T PRK15034 94 VPIFGGRRWTVFSTAILIIPCVWLGIAVQNPNTPFGIFIVIALLCGFA-GANFASSMGNISF---FFPKAKQGSALGING 169 (462)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHH-HHhHHHHHHHHHH---HCCHhHhHHHHHHHH
Confidence 499999999999999999999999987 8999999999999998 7788889999999 999999999999997
Q ss_pred HHHHHHHHHHHHHHhHH----------------------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHH
Q psy13784 76 TARAFGLLQVYFMGSLL----------------------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAE 133 (388)
Q Consensus 76 ~~~~~G~~~~~~~~~~~----------------------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~ 133 (388)
...++|..+++++...+ +||...++..++.++..++.+++.+|.|+
T Consensus 170 g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~~~------------ 237 (462)
T PRK15034 170 GLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDIAS------------ 237 (462)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCccc------------
Confidence 66666666554443221 48888888888888777777775554331
Q ss_pred HHHHHhcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC
Q psy13784 134 WAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSG 213 (388)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 213 (388)
++.+.++..+.+|+|+.|...++ .++.+.++..+..+.|.+.++ .
T Consensus 238 -----------------------------~~~~~~~~~~vlk~~~~Wllsll-----y~~tFG~fvg~s~~lp~~~~~-~ 282 (462)
T PRK15034 238 -----------------------------SRASIADQLPVLQRLHLWLLSLL-----YLATFGSFIGFSAGFAMLAKT-Q 282 (462)
T ss_pred -----------------------------cccCHHHHHHHhCCCchhHHHHH-----HHHHHHHHHHHHHHHHHHHHH-H
Confidence 00112345667788875543322 233444566677788888876 5
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHH
Q psy13784 214 FHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVL 293 (388)
Q Consensus 214 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (388)
++............+...+.++++|+++||+|+++++..+...+.+....+.... +.. ...+.+........
T Consensus 283 ~~~~~~l~~~~l~~l~~~l~rplgG~LADRiG~~~vl~~~~i~~~i~~~~~~l~l--p~~------~~~~~~~~~~~~~~ 354 (462)
T PRK15034 283 FPDVNILRLAFFGPFIGAIARSVGGAISDKFGGVRVTLINFIFMAIFSALLFLTL--PGT------GSGNFIAFYAVFMG 354 (462)
T ss_pred cChHHHHHHHHHHHHHHHHHHHhhHHHHHhcCchHHHHHHHHHHHHHHHHHHHHh--ccc------cccHHHHHHHHHHH
Confidence 5444444444555678889999999999999999999888877766654432221 110 00112222222222
Q ss_pred HHHHHHhccccchhhhhccCCch---------------------hhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc--c
Q psy13784 294 NLVASSVGFLPIPYLMLGEIFPM---------------------EVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG--N 350 (388)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~p~---------------------~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~ 350 (388)
.....+.+. ...+.++++.+|+ ++-|.+.|+....+.+|+++.|.+.|...+..| .
T Consensus 355 l~~~~G~gn-gsvfk~ip~~f~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~g~~~ 433 (462)
T PRK15034 355 LFLTAGLGS-GSTFQMIAVIFRQITIYRVKMKGGSDEQAQREAVTETAAALGFISAIGAVGGFFIPQAFGMSLNMTGSPV 433 (462)
T ss_pred HHHHhcccc-hHHHHhhHHHHhhhhhhcccccccchhHHhhHHHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHcCCcH
Confidence 223333333 3445677777774 257889999999999999999999999999888 6
Q ss_pred chhhHHHHHHHHHHHHhheeccC
Q psy13784 351 GIFFFYGLVAAIGTAHVLAYLPE 373 (388)
Q Consensus 351 ~~~~~~~~~~~~~~~~~~~~~~~ 373 (388)
..++.+.+..+++.++.+..+.+
T Consensus 434 ~~~~~~~~~~~~~~~~~w~~y~r 456 (462)
T PRK15034 434 GAMKVFLIFYIVCVLLTWLVYGR 456 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 67778888888887777665543
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.2e-27 Score=210.06 Aligned_cols=288 Identities=14% Similarity=0.126 Sum_probs=205.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+..+.+++.+.+.++++++.+++.|+++|++.+...+...+++.| +.|+++|++++++.....++
T Consensus 70 ~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~---~~~~~~~~~a~~~~~~~~~~ 146 (400)
T PRK11646 70 ADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIK---LIRPHQRGRFFSLLMMQDSA 146 (400)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999998888888999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH---hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcccccc
Q psy13784 81 GLLQVYFMGSLL---RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAE 157 (388)
Q Consensus 81 G~~~~~~~~~~~---~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (388)
|..++|.+++.+ +||+.|++.++..++..++..++.||.++ +++.
T Consensus 147 g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~~~----~~~~---------------------------- 194 (400)
T PRK11646 147 GAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAYKL----STVR---------------------------- 194 (400)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcccc----cccc----------------------------
Confidence 999999999888 99999999888877766555554665310 0000
Q ss_pred ccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhh
Q psy13784 158 SGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISI 237 (388)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
++.++++++.+++++.+........ .. ........+.|.+.++.+.++.+.+......++....+....
T Consensus 195 ------~~~~~~~~~~~~~~~~~~~~~~~~~-~~----~~~~~~~~~~p~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~ 263 (400)
T PRK11646 195 ------TPVREGMTRVLRDKRFVTYVLTLTG-YY----MLAVQVMLMLPIMVNDIAGSPSAVKWMYAIEACLSLTLLYPI 263 (400)
T ss_pred ------hhhHHHHHHHHcCchHHHHHHHHHH-HH----HHHHHHHHhhhhhHHhhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 0011234455666654422221111 11 112223457788887766667777777777777666555555
Q ss_pred heeec-ccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCch
Q psy13784 238 SFILP-HTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPM 316 (388)
Q Consensus 238 g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 316 (388)
+++.| |++.++.+..+..+..++...+... ++.+.......+...+.. ...|...++..|..|+
T Consensus 264 ~~~~~~r~~~~~~~~~~~~~~~~~~~~l~~~--------------~~~~~~~~~~~l~~~g~~-~~~p~~~~~~~~~~p~ 328 (400)
T PRK11646 264 ARWSEKRFRLEHRLMAGLLIMSLSMFPIGMV--------------SNLQQLFTLICLFYIGSI-IAEPARETLSASLADA 328 (400)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHH-HHHccHHHHHHhcCCc
Confidence 65555 5665666666666666665554331 112222222222222222 3336666889999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 317 EVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 317 ~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
++||++.|+.+....+|..+||.+.|.+.|..+
T Consensus 329 ~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~ 361 (400)
T PRK11646 329 RARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK 361 (400)
T ss_pred ccchhhhhHHHHHHHHHHHhcccchHHHHHHHh
Confidence 999999999999999999999999999998853
|
|
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-26 Score=207.50 Aligned_cols=315 Identities=11% Similarity=0.063 Sum_probs=208.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHH---h-hcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLIT---Y-SLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATT 76 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~ 76 (388)
+||+||||++..+..+.+++.+++. + .++++.+++.|++.|++.+...+...+++.+ ++|+++|++++|+.+.
T Consensus 72 ~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~---~~~~~~~g~~~g~~~~ 148 (402)
T TIGR00897 72 AEIIGPLKTMMIGLLLWCVGHAAFIVFGLGHANYPLILLFYGIRGLGYPLFAYSFLVWVVY---NTKQDNLSSAVGWFWA 148 (402)
T ss_pred HHHcCcHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHcchHHHHhHHHHHHHH---hCCHHHHHHHHHHHHH
Confidence 4999999999999999998877653 3 3578889999999999988887877888889 8999999999999999
Q ss_pred HHHHHH-HHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCC
Q psy13784 77 ARAFGL-LQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPT 151 (388)
Q Consensus 77 ~~~~G~-~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (388)
+.++|. .+++.+++.+ ||+..++.......+..++..++.+|.++. +++ ++
T Consensus 149 ~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~-------------------- 204 (402)
T TIGR00897 149 VYSIGIGVFGSYYSSYAIPAFGEMNTLWSALAFVLTGGVIALFSNKDIFTP---QHM-QT-------------------- 204 (402)
T ss_pred HHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHhccCCCCCc---ccc-cC--------------------
Confidence 999997 5788887665 766555544433333333444434543210 000 00
Q ss_pred ccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Q psy13784 152 SRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIF 231 (388)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ 231 (388)
+++.++.++..++.+++|..+...+. .+......+....|.|.+.++.|++..+.+.......++..
T Consensus 205 --------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~ 271 (402)
T TIGR00897 205 --------REKFSELGKAATILFTNPNVLLGGMV-----RIINTIGLFGFAVFLPMFVAELGFSTSEWLQIWGTFFFTNI 271 (402)
T ss_pred --------CcchhhHHHHHHHHHcChhHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Confidence 00000011223455666654322211 22233345667788999998889988888888888899999
Q ss_pred HHHHhhheeecccCCchHHH-HhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhh
Q psy13784 232 ASVISISFILPHTGVKPLSA-ASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLML 310 (388)
Q Consensus 232 ~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (388)
++.+..|+++||++||+... .+.....++...+........ .+.+.......+.+.+. ....+. ....
T Consensus 272 ig~~~~g~l~dr~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~---------~~~~~~~~~~~~~G~~~-~~~~~~-~~~~ 340 (402)
T TIGR00897 272 VFNVIFGIVGDKLGWMNTVRWFGGVGCGIFTLALYYIPQHFG---------HSFAVALIIAIALGIFL-AGYVPL-AAVF 340 (402)
T ss_pred HHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHccC---------CcHHHHHHHHHHHHHHH-HHHHHH-HHHH
Confidence 99999999999999888653 222333333222221110000 11222222222233222 223343 3556
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHh
Q psy13784 311 GEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHV 367 (388)
Q Consensus 311 ~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 367 (388)
.|..| ++|+++.|+.+...++++.++|.+.|.+.|..| ...+++.+++.+++.++.
T Consensus 341 ~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~ 397 (402)
T TIGR00897 341 PTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLT 397 (402)
T ss_pred HhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Confidence 67655 579999999999999999999999999999999 777787777776666544
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-26 Score=207.20 Aligned_cols=299 Identities=11% Similarity=0.016 Sum_probs=209.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+.++.+++.+.+++++|++.+++.|+++|++.+...+.....+.+ ..++++|++++++...+.++
T Consensus 65 ~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 141 (381)
T PRK03633 65 IKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLAWRFVAGIGCAMIWVVVESALMC---SGTSRNRGRLLAAYMMVYYL 141 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999988888888888 88999999999999999999
Q ss_pred HHHHHHHHHhHH---hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcccccc
Q psy13784 81 GLLQVYFMGSLL---RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAE 157 (388)
Q Consensus 81 G~~~~~~~~~~~---~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (388)
|..+++.+++.+ .++...+..+..........+...+|++ + .
T Consensus 142 g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~------------------------~----- 186 (381)
T PRK03633 142 GTVLGQLLVSKVSTELMSVLPWVTGLVLAAILPLLFTRILNQQ------A------------------------E----- 186 (381)
T ss_pred HHHHHHHHHhcccccccchHHHHHHHHHHHHHHHHHhcccCCC------C------------------------C-----
Confidence 999999999887 1222233222222222111111111110 0 0
Q ss_pred ccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhh
Q psy13784 158 SGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISI 237 (388)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
+ ++..+..+.++++..+.... .... ..........+.|.+.++.|.++.+.+.......++.+++++..
T Consensus 187 ---~---~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~lp~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~ 255 (381)
T PRK03633 187 ---N---HDSTSIWPMLKLRQARLGVN-GCII----SGIVLGSLYGLMPLYLNHQGMSDASIGFWMALLVSAGILGQWPI 255 (381)
T ss_pred ---C---CCCCCHHHHHHhcchHHHHH-HHHH----HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhh
Confidence 0 00112344556655442211 1111 11123445567888888889988888888888899999999999
Q ss_pred heeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchh
Q psy13784 238 SFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPME 317 (388)
Q Consensus 238 g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 317 (388)
+++.||+++|+.+..+.....++.+.... . ........+.. .......|.......|..|++
T Consensus 256 g~l~dr~~~~~~l~~~~~~~~~~~~~~~~----------------~-~~~~~~~~l~g-~~~~~~~p~~~~~~~~~~~~~ 317 (381)
T PRK03633 256 GRLADRFGRLLVLRVQVFVVILGSIAMLS----------------Q-AAMAPALFILG-AAGFTLYPVAMAWACEKVEHH 317 (381)
T ss_pred HHHHHHcCcHHHHHHHHHHHHHHHHHHhh----------------h-HHHHHHHHHHH-HHHHhHHHHHHHHHHccCCHH
Confidence 99999999999887777666665543311 0 11111111222 222234467778888999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHH
Q psy13784 318 VKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAH 366 (388)
Q Consensus 318 ~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 366 (388)
+++...+..+...++|+.++|.+.|.+.|+.+ ...+...+.+.++..+.
T Consensus 318 ~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~ 367 (381)
T PRK03633 318 ELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLM 367 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 88888888888899999999999999999998 66777766666655543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.3e-27 Score=212.06 Aligned_cols=313 Identities=18% Similarity=0.123 Sum_probs=219.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+..+.+++.+++.++++++.+++.|++.|++.+ ..+....++.| +.|+++|+++.++...+..+
T Consensus 78 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 153 (408)
T PRK09874 78 ADRKGRKIMLLRSALGMGIVMVLMGLAQNIWQFLILRALLGLLGG-FVPNANALIAT---QVPRNKSGWALGTLSTGGVS 153 (408)
T ss_pred hhhhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhh-hHHhHHHHHHH---hcCHhhhhHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999865 45777788889 89999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..+++.+++.+ +||+.|++.+++.++..+..++++||+++.. ++.++
T Consensus 154 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~------------------------- 205 (408)
T PRK09874 154 GALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENFQPV---SKKEM------------------------- 205 (408)
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCcccc---cchhh-------------------------
Confidence 999999998877 8999999999888877776666677754210 00000
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCc----HHHHHHHHHHHHHH
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLN----PYFITVIGGLIIFA 232 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~----~~~~~~~~~~~~~~ 232 (388)
.+.++..+.+++++.+........... ........+.+.+..+.+.+..+ .+......+++.++
T Consensus 206 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~~ 273 (408)
T PRK09874 206 --------LHMREVVTSLKNPKLVLSLFVTTLIIQ----VATGSIAPILTLYVRELAGNVSNIAFISGMIASVPGVAALL 273 (408)
T ss_pred --------hHHHHHHHhCcCCchHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Confidence 000112334455544332222211111 11233344555565544332222 23445556777888
Q ss_pred HHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhcc
Q psy13784 233 SVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGE 312 (388)
Q Consensus 233 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (388)
+.+..+++.||++||+.+..+.....++.+..... .+.+...+... ..+.......+...+...+
T Consensus 274 ~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~ 338 (408)
T PRK09874 274 SAPRLGKLGDRIGPEKILITALIFSVLLLIPMSFV--------------QTPLQLGILRF-LLGAADGALLPAVQTLLVY 338 (408)
T ss_pred HHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHH-HHHhhhHhhHHHHHHHHHH
Confidence 88899999999999998887777666555544330 12232222222 2233333344556677788
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheecc
Q psy13784 313 IFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLP 372 (388)
Q Consensus 313 ~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~ 372 (388)
..|++.+++.+++.+....+|..++|.+.|.+.+..| ...+.+.+++.+++.++.+...+
T Consensus 339 ~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~ 399 (408)
T PRK09874 339 NSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYSWNSLR 399 (408)
T ss_pred hCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999999999988 77778777777777765554443
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.1e-27 Score=210.05 Aligned_cols=285 Identities=19% Similarity=0.211 Sum_probs=200.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+.+..+..+..++.+++.++++++.+++.|+++|++.+...+...+++.| ++|+++|+++.++.+....+
T Consensus 62 ~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~---~~~~~~r~~~~~~~~~~~~i 138 (392)
T PRK10473 62 ADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRD---TLDDRRRAKVLSLLNGITCI 138 (392)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999988999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..++|.++..+ +||+.|++.++..++..++..+++||+++. +++ +
T Consensus 139 ~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~---~~~-~-------------------------- 188 (392)
T PRK10473 139 IPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETRPA---RAP-A-------------------------- 188 (392)
T ss_pred HHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCCCc---ccC-C--------------------------
Confidence 999999998776 899999999988888777766667876421 000 0
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHH
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVI 235 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~ 235 (388)
++...++.++.++++.++........... .......+.|.+++ +.|+++.+.+......+++.+++.+
T Consensus 189 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~ 257 (392)
T PRK10473 189 ------ASSKPRENSESLLNRFFLSRLVITTLSVT-----VILTFVNTSPVLLMEQMGFSRGEYAIIMALTAGVSMTVSF 257 (392)
T ss_pred ------ccchHHHHHHHHhCHHHHHHHHHHHHHHH-----HHHHHHHhCHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 00011122344555554433332221111 12233445565554 5688888888888889999999999
Q ss_pred hhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCc
Q psy13784 236 SISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFP 315 (388)
Q Consensus 236 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 315 (388)
+.+++.||+|||+.+..+.....++.+.+... ...+.......+...+...+. +. ....+..|
T Consensus 258 ~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~~~g~~~~~-~~--~~~~~~~~ 320 (392)
T PRK10473 258 STPFALGIFKPRTLMLTSQVLFLAAGITLALS--------------PSHAVSLFGITLICAGFSVGF-GV--AMSQALGP 320 (392)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH--------------HHHHHHHHHHHHHHHHHHHHh-HH--HHHHHhcc
Confidence 99999999999999888877777666665441 111222222222222222222 11 33344555
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 316 MEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 316 ~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
.++|+ |..+....++..+++.+.+++.+..|
T Consensus 321 ~~~~~---g~~~~~~~~~~~~g~~~~~~l~~~~g 351 (392)
T PRK10473 321 FSLRA---GVASSTLGIAQVCGSSLWIWLAAVLG 351 (392)
T ss_pred Ccccc---cHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44443 44445556777778888888888877
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.8e-26 Score=195.15 Aligned_cols=319 Identities=18% Similarity=0.220 Sum_probs=243.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchh---HHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTIT---NLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTA 77 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~ 77 (388)
.||+|.|++..++.++..+-++..+++.+.+ ++++.+.+.|++ |+.+.....++++ ++|||++|.++|+.. .
T Consensus 73 ~drfGgR~~~~~s~~l~~IP~~~~~~a~~~~~~~~ll~~gll~G~~-GasFav~m~~~s~---~fP~~~qG~AlGI~g-~ 147 (417)
T COG2223 73 TDRFGGRKWTILSMLLLLIPCLGLAFAVTYPSTWQLLVIGLLLGLA-GASFAVGMPNASF---FFPKEKQGLALGIAG-A 147 (417)
T ss_pred hcccCchHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhcc-cceehcccccccc---cCChhhhhHHHHHhc-c
Confidence 4999999999999999999999999995555 999999999997 5567888999999 999999999999999 8
Q ss_pred HHHHHHHHHHHHhHH----h---HHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCC
Q psy13784 78 RAFGLLQVYFMGSLL----R---YRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEP 150 (388)
Q Consensus 78 ~~~G~~~~~~~~~~~----~---w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (388)
.++|..+..+++..+ + ||....+..+..++..+..++...|.|......++
T Consensus 148 GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~p~~r~~~~~---------------------- 205 (417)
T COG2223 148 GNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDVPEHRASVKP---------------------- 205 (417)
T ss_pred ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhccccc----------------------
Confidence 888888777777666 6 99999999999999888888878887642111000
Q ss_pred CccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHH
Q psy13784 151 TSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLI 229 (388)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~ 229 (388)
....+.+..+++++.|.. .+.++..+.++..+..+.|.+++ ++|+++.+++.......+.
T Consensus 206 --------------~~~~~~~~v~~~~~~W~l-----sllY~~tFG~Fvgfs~~l~~~~~~~fg~~~~~Ag~~a~~f~~~ 266 (417)
T COG2223 206 --------------QLPAQLKAVFSNKDTWLL-----SLLYFATFGGFVGFSAYLPMYLVTQFGLSPVTAGLIAFLFPLI 266 (417)
T ss_pred --------------cchhHHHHHhcCcchHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHH
Confidence 000234455556655532 23333355567888999999997 6699999999999999999
Q ss_pred HHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhh
Q psy13784 230 IFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLM 309 (388)
Q Consensus 230 ~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (388)
+.+.+..+|+++||+|.++.+......+.++..+.......... ..+...............+.+. ...+.+
T Consensus 267 g~l~Rp~GG~LsDR~Gg~rv~~~~f~~~~~~~~~l~~~~~~~~~-------~~~~~~~~~~~l~l~~~~G~Gn-Gsvfk~ 338 (417)
T COG2223 267 GALARPLGGWLSDRIGGRRVTLAVFVGMALAAALLSLFLTGFGH-------GGSFVVFVAVFLALFVFAGLGN-GSVFKM 338 (417)
T ss_pred HHHHHhccchhhhhccchhHHHHHHHHHHHHHHHHHcccccccc-------CcchHHHHHHHHHHHHHhccCc-chheee
Confidence 99999999999999999999988888888888777652211110 1122333333333333444443 455578
Q ss_pred hccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc--cchhhHHHHHHHHHHHHhheeccCC
Q psy13784 310 LGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG--NGIFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 310 ~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
++.++|++ .|.+.|+...++.+|++.-|...+...+..| ...++.+..+.+++.++.+....+.
T Consensus 339 Ip~if~~~-~G~v~G~vga~G~lGGf~lp~~~g~~~~~tg~~~~~f~~~~~~~~~a~v~~~~~y~r~ 404 (417)
T COG2223 339 IPVIFPKE-TGAVTGIVGAIGGLGGFFLPLAFGVSLDLTGSYTGAFMLLLAFYLVALVLTWALYARR 404 (417)
T ss_pred chHHHHhh-hhHHHHHHHHhccccccchhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 88888874 7999999999999999999999999999999 7788888888888887666554443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.2e-26 Score=201.29 Aligned_cols=284 Identities=21% Similarity=0.267 Sum_probs=233.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+.+..+..+..++.+...++++++.+++.|++.|++.+...+...+++.| +.|+|+|++.+++......+
T Consensus 58 ~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 134 (352)
T cd06174 58 SDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAE---WFPPKERGRALGLFSAGFGL 134 (352)
T ss_pred HHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHH---hCCccchhhhhhHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..+++.+++.+ +||+.+++.++..++..+...+ ++
T Consensus 135 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--------------------------------------- 174 (352)
T cd06174 135 GALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLF-LL--------------------------------------- 174 (352)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH-HH---------------------------------------
Confidence 999999999888 7999999999888877666655 21
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHH
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSS-GFHLLNPYFITVIGGLIIFASVI 235 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~ 235 (388)
|. +.......+...........+.|.+.++. |.+..+.+.......++..++.+
T Consensus 175 --------------------~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 229 (352)
T cd06174 175 --------------------RL-----LLLLALAFFLLSFGYYGLLTYLPLYLQEVLGLSAAEAGLLLSLFGLGGILGAL 229 (352)
T ss_pred --------------------HH-----HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 01 11122222233344567777888888765 88888999999999999999999
Q ss_pred hhheeecccCCch-HHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCC
Q psy13784 236 SISFILPHTGVKP-LSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIF 314 (388)
Q Consensus 236 ~~g~l~d~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (388)
+.+++.||++||+ .+..+.....++.+.+... .+...........+.......+....+..|..
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------------~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 294 (352)
T cd06174 230 LGGLLSDRLGRRRLLLLIGLLLAALGLLLLALA---------------PSLALLLVALLLLGFGLGFAFPALLTLASELA 294 (352)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh---------------ccHHHHHHHHHHHHHHHhccchhHHHHHHhhc
Confidence 9999999999999 8888888887777776541 11222333333444444445677889999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHh
Q psy13784 315 PMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHV 367 (388)
Q Consensus 315 p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 367 (388)
|+++|++..|+.+...+++..++|.+.+.+.+..+ ...+.+.+++.+++.++.
T Consensus 295 ~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~ 348 (352)
T cd06174 295 PPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLL 348 (352)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999998888 777777777777766644
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-26 Score=203.82 Aligned_cols=312 Identities=12% Similarity=0.077 Sum_probs=206.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||++++.+..+++++.+++.+++|++.+++.|+++|++.+...+....++.| ++|+++|++++++......+
T Consensus 75 ~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 151 (413)
T PRK15403 75 SDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSICFIATVGYVTVQE---AFGQTKGIKLMAIITSIVLV 151 (413)
T ss_pred HHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999988777777788999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..++|.+++.+ +||+.|++.++..++..+..++.+||+++. +++..+
T Consensus 152 ~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~~---~~~~~~------------------------- 203 (413)
T PRK15403 152 APIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVKR---GAVPFS------------------------- 203 (413)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCccc---cCCCCC-------------------------
Confidence 999999998877 899999999998888776666668887530 000000
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHH
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSS-GFHLLNPYFITVIGGLIIFASVI 235 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~ 235 (388)
.+...+++++.+++|.++...+.. .........+..+.|.++++. |+++.+.++.......+..+++.
T Consensus 204 ------~~~~~~~~~~ll~~~~~~~~~l~~-----~~~~~~~~~~~~~~P~~l~~~~g~s~~~~gl~~~~~~~~~~i~~~ 272 (413)
T PRK15403 204 ------AKSVLRDFRNVFRNRLFLTGAATL-----SLSYIPMMSWVAVSPVILIDAGGMTTSQFAWTQVPVFGAVIVANA 272 (413)
T ss_pred ------hHHHHHHHHHHHcCHHHHHHHHHH-----HHHHHHHHHHHHhChHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 001123455667776555422221 222223455666778888754 88888888888878888888888
Q ss_pred hhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCc
Q psy13784 236 SISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFP 315 (388)
Q Consensus 236 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 315 (388)
+.+++.++..+++..........++..++........ ...+.......+...+.+... |......-+. .
T Consensus 273 l~~~~~~~~~~~~~~~~~~~~~~ig~~l~~~~~~~~~---------~~~~~~~~~~~l~~~G~~~~~-p~~~~~al~~-~ 341 (413)
T PRK15403 273 IVARFVKDPTEPRFIWRAVPIQLVGLALLIVGNLLWP---------HVWLWSVLGTSLYAFGIGLIF-PTLFRFTLFS-N 341 (413)
T ss_pred HHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHcc---------ccHHHHHHHHHHHHHHHHHHh-HHHHHHHhcc-C
Confidence 8877665444434332222333333333322110011 111112223333333333322 3333222111 2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhHHHHHHHHHHH
Q psy13784 316 MEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGIFFFYGLVAAIGTA 365 (388)
Q Consensus 316 ~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 365 (388)
...+|++.++.+.....+...++...+++.++....++...+.++.+...
T Consensus 342 ~~~~G~a~a~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 391 (413)
T PRK15403 342 NLPKGTVSASLNMVILMVMAVSVEIGRWLWFNGGRLPFHLLAVVAGVIVV 391 (413)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH
Confidence 22369999999999999999999999987777446666655555544433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-27 Score=210.55 Aligned_cols=290 Identities=19% Similarity=0.253 Sum_probs=208.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+.++.+++.++..+++|++.+++.|++.|++.+...+...+++.| ++|+++|++++++...+.++
T Consensus 56 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~~ 132 (352)
T PF07690_consen 56 SDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIAD---WFPPEERGRAFGILSAGFSL 132 (352)
T ss_dssp HHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCTCCHHHHHHHHHHHHHH
T ss_pred HHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccc---cchhhhhhhccccccchhhh
Confidence 499999999999999999997777777888899999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|.++++.+++.+ +||+.|++.+++.++..++...+++++|+....+++.++.
T Consensus 133 g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~------------------------ 188 (352)
T PF07690_consen 133 GSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPPPRERESPKESE------------------------ 188 (352)
T ss_dssp HHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---STTTT--SSTTTT------------------------
T ss_pred hhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhcccccccccccccc------------------------
Confidence 999999999988 8999999999999988776555566654311111110000
Q ss_pred cccccccccccch-hhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHcCCC-CCcHHHHHHHHHHHHHHH
Q psy13784 157 ESGAQGEQMSTTN-IFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDF-VRSSGFH-LLNPYFITVIGGLIIFAS 233 (388)
Q Consensus 157 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s-~~~~~~~~~~~~~~~~~~ 233 (388)
++++.+..+ +++..+++..+ ..+..... ..........+.|.+ .+..|++ ..+.+.......+...++
T Consensus 189 ----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (352)
T PF07690_consen 189 ----SKKPKPLKPGFKSLFKNPVLW-ILLIAFFL----FFFVFSGFSFFLPLYLQEVLGFSGPSQAGLLFSIFGIVGIIG 259 (352)
T ss_dssp ------HHHCCCH-CTHHHHHHCCH-HHHHHHHH----HHHHHHHHHHHHHHHCCHHHHCCTHHHHHHHHHHHHHHHHHH
T ss_pred ----cccccccccccccccccchhh-hhhhhhhH----HHHHHHHhhcccchhhhhccCCCHHHHHHHHHHHHHHHHHHH
Confidence 001111112 34444444443 11222212 222245577888887 4566887 577888889999999999
Q ss_pred HHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccC
Q psy13784 234 VISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEI 313 (388)
Q Consensus 234 ~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (388)
.++.+++.||+++|+..........+..+.+...... ++.........+.+. ......+....+..|.
T Consensus 260 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~ 327 (352)
T PF07690_consen 260 SLLAGRLSDRFGRRRRLLIAILLLILGALGLLLLPFS-----------SSPVWLIIALFLIGF-GFGIVFPILFSLIQEL 327 (352)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCSHHH-----------CHHHHHHHHHHHHHH-HHHHHCHHHHHHHHCC
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHh-----------hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHh
Confidence 9999999999999887776666666555555331111 112233333333333 3333457778999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHH
Q psy13784 314 FPMEVKGVAAGLATCLAYIFGFFAV 338 (388)
Q Consensus 314 ~p~~~r~~~~~~~~~~~~~g~~~~~ 338 (388)
.|+++|+++.|+.+...++++.++|
T Consensus 328 ~~~~~~g~~~g~~~~~~~~~~~igP 352 (352)
T PF07690_consen 328 VPPEYRGTAFGLFNSIGSLGGIIGP 352 (352)
T ss_dssp CHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999987
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=7.7e-26 Score=203.13 Aligned_cols=288 Identities=16% Similarity=0.144 Sum_probs=199.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+..+.+++.+.+.++++++.+++.|++.|++.+...+...+++.| ++|+++|++++++......+
T Consensus 50 ~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 126 (377)
T PRK11102 50 ADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRD---MFPKEEFSRMMSFVTLVMTI 126 (377)
T ss_pred HhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..+++.+++.+ +||+.|++.+++.++..+...+++||+++. +++.+
T Consensus 127 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-------------------------- 177 (377)
T PRK11102 127 APLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETLPK---ERRQP-------------------------- 177 (377)
T ss_pred HHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccCcc---cccCC--------------------------
Confidence 999999998877 899999999888888777666667876421 00000
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHH
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVI 235 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~ 235 (388)
.+.++..++..+.+++++.+...+ .....+.+......+.|.++. ..|+++.+.+.......+..+++.+
T Consensus 178 ----~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~ 248 (377)
T PRK11102 178 ----FHLRTTIRNFASLFRHKRVLGYML-----ASGFSFAGMFSFLTAGPFVYIELNGVSPQNFGYYFALNIVFLFVMTI 248 (377)
T ss_pred ----CChHHHHHHHHHHHcChHHHHHHH-----HHHHHHHHHHHHHHcCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 000011123345565554332211 112222233444555565554 5699888999999999999999999
Q ss_pred hhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCc
Q psy13784 236 SISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFP 315 (388)
Q Consensus 236 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 315 (388)
+.+++.||+|+|+.+..+.....+..+.+......+ ...+............... ..+.......|..|
T Consensus 249 ~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 317 (377)
T PRK11102 249 INSRFVRRVGALNMLRFGLWIQFIMGIWLVVSALLD----------LGFWALVVGVAAFVGCVSM-ISSNAMAVILDEFP 317 (377)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHh----------hhHHHHHHHHHHHHHHHHH-hhHHHHHHHhcccc
Confidence 999999999999988877765444333222111000 1112222222222222222 22333456677777
Q ss_pred hhhHHHHHHHHHHHHH-HHHHHHHHHh
Q psy13784 316 MEVKGVAAGLATCLAY-IFGFFAVKTW 341 (388)
Q Consensus 316 ~~~r~~~~~~~~~~~~-~g~~~~~~~~ 341 (388)
+.++++.++.+.... ++..+++.+.
T Consensus 318 -~~~g~~~~~~~~~~~~~g~~~g~~~~ 343 (377)
T PRK11102 318 -HMAGTASSLAGTLRFGIGAIVGALLS 343 (377)
T ss_pred -ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999998877654 5555555543
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-25 Score=201.56 Aligned_cols=307 Identities=13% Similarity=0.114 Sum_probs=201.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||++++.+..+.+++++.+.++++. ++.|+++|++.+...|...+++.| ++|+++|++++++.+....+
T Consensus 62 aDr~grr~vl~~~~~~~~~~~~~~~~~~~~---~~~r~l~G~~~a~~~pa~~a~i~~---~~~~~~~~~a~~~~~~~~~~ 135 (393)
T PRK11195 62 ADSFPKGRVMFIANGIKLLGCLLMLFGIHP---LLAYGLVGIGAAAYSPAKYGILTE---LLPGEKLVKANGWMEGSTIA 135 (393)
T ss_pred hhccCCchhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH---HcCHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999888887664 789999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH---hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcccccc
Q psy13784 81 GLLQVYFMGSLL---RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAE 157 (388)
Q Consensus 81 G~~~~~~~~~~~---~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (388)
|.++||.+++.+ .|+..+.+.+...++.. +..+.+||+|+... ++.++..+..+
T Consensus 136 ~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~-~~~~~l~~~~~~~~--~~~~~~~~~~~-------------------- 192 (393)
T PRK11195 136 AILLGTVLGGALADPHAEAALAVCALIYLLAA-LFNLFIPRLGARRP--GQSWNPIALLR-------------------- 192 (393)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhcCCCCccccc--ccCCCHHHHHH--------------------
Confidence 999999999998 55666665554444333 33445888763210 00000000000
Q ss_pred ccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHHh
Q psy13784 158 SGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVIS 236 (388)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~ 236 (388)
+-....++.++++..+.........+.. .....+..|.+.+ ..|.++.+.+......+++.+++++.
T Consensus 193 -------~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lg~s~~~~G~~~~~~~~g~i~g~~~ 260 (393)
T PRK11195 193 -------DFFHACRVLWRDKLGRFSLAGTTLFWGA-----GATLRFLVLAWAPVALGITLNQPAYLQAVVAIGIAVGAGA 260 (393)
T ss_pred -------HHHHHHHHHHhCchhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHH
Confidence 0011223455555544322222211111 2233344455554 45888999999999999999999999
Q ss_pred hheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCch
Q psy13784 237 ISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPM 316 (388)
Q Consensus 237 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 316 (388)
.+++.||.++++.+..+.. .++....+.. ..+.+.......+.+.+.... .+...+...|..|+
T Consensus 261 ~~~l~~~~~~~~~~~~g~~-~~~~~~~~~~--------------~~~~~~~~~~~~~~G~~~g~~-~~~~~~~~q~~~~~ 324 (393)
T PRK11195 261 AARLVTLETVLRVLPAGIL-MGLVVLLMAL--------------QHSLLPAYPLLILIGALGGFF-VVPMNALLQHRGHV 324 (393)
T ss_pred HHHHhcCCcccchHHHHHH-HHHHHHHHHH--------------HhHHHHHHHHHHHHHHhhhhh-hhhHHHHHHhhCcc
Confidence 9999999988877766543 3332222221 012222222222333333332 24445677777666
Q ss_pred hh-HHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHH
Q psy13784 317 EV-KGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTA 365 (388)
Q Consensus 317 ~~-r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~ 365 (388)
+. +|++.++.+...+++..++..+.+. .+..| ...+.+.+...+++..
T Consensus 325 ~~~~g~~~a~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 374 (393)
T PRK11195 325 LVGAGHSIAVQNFNENLAMLLMLGLYSL-LVKLGVPVVAVIVGFGLLVALA 374 (393)
T ss_pred cccchhHHHHHhHHHHHHHHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHH
Confidence 54 7999999999999999999999986 47778 4444443333333333
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=1e-25 Score=207.52 Aligned_cols=315 Identities=13% Similarity=0.098 Sum_probs=213.3
Q ss_pred CCCC-----CchhH-HHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHH
Q psy13784 1 MDKL-----GRKPA-IILIGIVGIIGWLLITYS---LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLA 71 (388)
Q Consensus 1 sDr~-----Grr~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~ 71 (388)
+||+ ||||. +..+.+..+++...+++. ++++.+.+.|++.|++.+...+...+++.| ++|+++|+++.
T Consensus 69 ~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~~~~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~---~~~~~~rg~~~ 145 (491)
T PRK11010 69 MDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFLEPGTQLRWLAALAVVIAFCSASQDIVFDAWKTD---VLPAEERGAGA 145 (491)
T ss_pred HHcccccCCCCchHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcChhhhHHHH
Confidence 4888 99986 667777777787777775 478889999999999999999999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHH-----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCC
Q psy13784 72 TWATTARAFGLLQVYFMGSLL-----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSN 146 (388)
Q Consensus 72 ~~~~~~~~~G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (388)
++...+..+|.++++.++..+ |||..|++.++..++..+..++ +||+++.. ++.++
T Consensus 146 ~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~-~~e~~~~~---~~~~~--------------- 206 (491)
T PRK11010 146 AISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLL-APEPTDTI---PVPKT--------------- 206 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHh-cCCCcccc---ccccc---------------
Confidence 999999999999998777765 7999999999888777666555 78865310 00000
Q ss_pred CCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-HHcCCCCCcHHHHHH-
Q psy13784 147 QTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFV-RSSGFHLLNPYFITV- 224 (388)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~- 224 (388)
.++....++.+.++++..+......+ ... ........+.+.++ ++.|++..+.+....
T Consensus 207 ---------------~~~~~~~~l~~~~~~~~~~~~ll~~~-l~~----~~~~~~~~~~~~~l~~~~G~s~~~~g~~~~~ 266 (491)
T PRK11010 207 ---------------LEQAVVAPLRDFFGRNNAWLILLLIV-LYK----LGDAFAMSLTTTFLIRGVGFDAGEVGLVNKT 266 (491)
T ss_pred ---------------hhhhHHHHHHHHHcCcCHHHHHHHHH-HHH----HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 00001123445555554333222221 111 11223334455554 467999888888874
Q ss_pred HHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhcccc
Q psy13784 225 IGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLP 304 (388)
Q Consensus 225 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (388)
...++.+++.+++|+++||+++|+.+..+..+..+..+.+....... .+.+.......+.....+.+. +
T Consensus 267 ~g~i~~iiG~ll~G~L~dr~g~~~~l~i~~~l~~l~~l~~~~l~~~~----------~~~~~l~~~~~l~~~~~g~~~-~ 335 (491)
T PRK11010 267 LGLLATIVGALYGGILMQRLSLFRALMIFGILQGVSNAGYWLLSITD----------KNLYSMGAAVFFENLCGGMGT-A 335 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcc----------ccHHHHHHHHHHHHHHHHHHH-H
Confidence 55678999999999999999998877665555444443332211111 111222222222122222222 3
Q ss_pred chhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhh
Q psy13784 305 IPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVL 368 (388)
Q Consensus 305 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~ 368 (388)
..+++..+..+++.+++..|+.+....+|..+++.+.|.+.|..| ...+.+.+++++++.++..
T Consensus 336 ~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~ 400 (491)
T PRK11010 336 AFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLL 400 (491)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHH
Confidence 345788888999899999999999999999999999999999999 5556556666655555443
|
|
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-25 Score=202.24 Aligned_cols=291 Identities=15% Similarity=0.069 Sum_probs=208.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+..+.+++.+++.++++++.+++.|+++|++.+...+...+++.| +++++++++..+.......+
T Consensus 65 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 141 (401)
T PRK11043 65 SDRYGRKPVLLAGLSLFALGSLGMLWVESAAQLLVLRFVQAVGVCSAAVIWQALVID---RYPAQKANRVFATIMPLVAL 141 (401)
T ss_pred HhhcCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhhHHHHHHHHHHHHH---hcCcHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999988887877889999 99999999999999888899
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..++|.+++.+ +||+.|++.++..++..+..++ ++|+++. ++ +
T Consensus 142 ~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----~~-~-------------------------- 189 (401)
T PRK11043 142 SPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLR-LKPSKKA----RK-Q-------------------------- 189 (401)
T ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHH-cCCCCCc----cc-c--------------------------
Confidence 999999888877 9999999998888777666655 5554310 00 0
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHh
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVIS 236 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~ 236 (388)
++++.++++.+++++++...+..... ...+.....+.|.+.++.|+++.+.+.......++..++.+.
T Consensus 190 -------~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~g~~~ 257 (401)
T PRK11043 190 -------SQDALTFKQLLKSKTYLGNVLIFAAC-----SAAFFAWLTGSPFILEQMGYSPADIGLSYVPQTIAFLVGGYG 257 (401)
T ss_pred -------chHHHHHHHHHcChhHHHHHHHHHHH-----HHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 01112345566666544332222111 122344566778888888998888888888888888999999
Q ss_pred hheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCch
Q psy13784 237 ISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPM 316 (388)
Q Consensus 237 ~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 316 (388)
.+++.||+++|+..........++.+.+........ ...+.......+...+. ....+.......|..|+
T Consensus 258 ~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 327 (401)
T PRK11043 258 CRAALQKWGGEQLLPWLLVLFAVSVIAIWLASLLSH---------PSLVPLLIPFCVMAAAN-GAIYPIVVAQALRPFPQ 327 (401)
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHhcc---------CcHHHHHHHHHHHHHHH-HHHHHHHHHHHhhhCcc
Confidence 999999999988766555554444443322211111 12222222222233333 33345555666676664
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 317 EVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 317 ~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
.++++.|+.++....++..++.+.|.+.+...
T Consensus 328 -~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~~~ 359 (401)
T PRK11043 328 -ATGKAAALQNTLQLGLCFLASLLVSALISTPL 359 (401)
T ss_pred -cChHHHHHHHHHHHHHHHHHHHHHHHccCCCh
Confidence 69999999999999999999999998877544
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.2e-25 Score=200.74 Aligned_cols=309 Identities=11% Similarity=0.068 Sum_probs=199.3
Q ss_pred CCCCCchhHH-HHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhh--hHHHHHHHHH
Q psy13784 1 MDKLGRKPAI-ILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLR--GSLATWATTA 77 (388)
Q Consensus 1 sDr~Grr~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r--~~~~~~~~~~ 77 (388)
+||+||||.+ ..+.++.+++..+.+++++++.+++.+.+.|...+...|....+..| +.++++| +...++.+.+
T Consensus 75 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~ 151 (393)
T PRK15011 75 SDKRGDRKSLIVFCCLLGVLACTLFAWNRNYFVLLFVGVFLSSFGSTANPQMFALARE---HADKTGREAVMFSSFLRAQ 151 (393)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH---HhhhccchHHHHHHHHHHH
Confidence 5999999875 45666667888888899999988766655544455667778888888 7666655 3456788889
Q ss_pred HHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcc
Q psy13784 78 RAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSR 153 (388)
Q Consensus 78 ~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (388)
.++|.+++|.+++.+ |||..|++.++..++..+..++++||+|+. + + ++ .
T Consensus 152 ~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~-~-~~---------------------~ 205 (393)
T PRK15011 152 VSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMRKE---L-P-LA---------------------T 205 (393)
T ss_pred HHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccCCC---C-c-cc---------------------c
Confidence 999999999999887 999999999988888777777768886520 0 0 00 0
Q ss_pred ccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHH
Q psy13784 154 GDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFA 232 (388)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~ 232 (388)
.+ .+..+ ++++.....+. .... .+.....+..+.|.+++ +.|+++.+.+.......+..++
T Consensus 206 ~~-----------~~~~~---~~~~~~~~~~~---~~~~-~~~~~~~~~~~~p~~l~~~~~~~~~~~g~~~~~~~~~~i~ 267 (393)
T PRK15011 206 GT-----------LEAPR---RNRRDTLLLFV---ICTL-MWGTNSLYIINMPLFIINELHLPEKLAGVMMGTAAGLEIP 267 (393)
T ss_pred cc-----------ccccc---cccccHHHHHH---HHHH-HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 00 00000 11111111111 1111 11223445567787775 5688888888887777788888
Q ss_pred HHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhcc
Q psy13784 233 SVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGE 312 (388)
Q Consensus 233 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (388)
+.++.|+++||++||+.+..+.....+....+.. . .+.+.......+.....+.. .+....+..|
T Consensus 268 ~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~---~-----------~~~~~~l~~~~l~~~~~g~~-~~~~~~~~~~ 332 (393)
T PRK15011 268 TMLIAGYFAKRLGKRFLMRVAAVAGVCFYAGMLM---A-----------HSPAILLGLQLLNAIYIGIL-GGIGMLYFQD 332 (393)
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---H-----------hhHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 9999999999999998776655444433322211 0 11222222222121222221 1233466788
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheeccC
Q psy13784 313 IFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPE 373 (388)
Q Consensus 313 ~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 373 (388)
..|++ |+++.++++...++|..++|.+.|.+.|..| ...+.+.+++.+++.+ ..+..||
T Consensus 333 ~~p~~-~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~-~~~~~~~ 392 (393)
T PRK15011 333 LMPGQ-AGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLF-CLLRIKD 392 (393)
T ss_pred hCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH-HHHhhcC
Confidence 88865 9999999999999999999999999999888 5555555555555444 3344443
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-26 Score=203.10 Aligned_cols=308 Identities=14% Similarity=0.090 Sum_probs=213.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++.++.++.+++.++.+++++++.+++.|++.|.+.+...+...++..| ..|+++|+++.++.....++
T Consensus 67 ~Dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~~~~~l 143 (395)
T PRK10054 67 ADKFDKKRYMLLAITAFASGFIAIPLVNNVTLVVLFFALINCAYSVFSTVLKAWFAD---NLSSTSKTKIFSLNYTMLNI 143 (395)
T ss_pred HhhcCcchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCHhHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999998888888888999999 89999999999999999999
Q ss_pred HHHHHHHHHhHH---hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcccccc
Q psy13784 81 GLLQVYFMGSLL---RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAE 157 (388)
Q Consensus 81 G~~~~~~~~~~~---~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (388)
|..++|.+++.+ +|+.+|++.++..++..+...+++||+++. ++.++
T Consensus 144 g~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~~~~----~~~~~-------------------------- 193 (395)
T PRK10054 144 GWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRSEKA----IATET-------------------------- 193 (395)
T ss_pred HHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhccccc----cccch--------------------------
Confidence 999999999987 899999998888877766555546654310 00000
Q ss_pred ccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HcCCCCCcHHHHHHHHHHHHHHHH
Q psy13784 158 SGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR---SSGFHLLNPYFITVIGGLIIFASV 234 (388)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g~s~~~~~~~~~~~~~~~~~~~ 234 (388)
++..+.++.+++|..+.......+.... ......+.+.+.. +.+.+....+.......+......
T Consensus 194 -------~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 261 (395)
T PRK10054 194 -------GSVWSPSVLLQDKALLWFTCSGFLASFV-----SGAFASCISQYVMVVADSDFAEKVVAVVLPVNAAMVVSLQ 261 (395)
T ss_pred -------hhhhhhhhhccCceehHHHHHHHHHHHH-----HHHhhhhHHHHHHHhcccchHHHHHHHHHHhhhhheeeeh
Confidence 0001124456666655443332222221 1222223334332 234444455666666666666777
Q ss_pred HhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCC
Q psy13784 235 ISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIF 314 (388)
Q Consensus 235 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (388)
...+++.||.++|+.+..+..+..++...+... .++.+...........+ .....|.....+.+..
T Consensus 262 ~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~g-~~~~~p~~~~~~~~~~ 327 (395)
T PRK10054 262 YSVGRRLNAANIRPLMTAGTLCFVIGLVGFIFS-------------GNSLLLWGMSAAVFTVG-EIIYAPGEYMLIDHIA 327 (395)
T ss_pred hHHHHHHccCCchhHHHHHHHHHHHHHHHHHHc-------------chHHHHHHHHHHHHHHH-HHHHHhhHHHHHHHhC
Confidence 788899999999998888877777666655431 01122222222222222 2333466667888999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhh
Q psy13784 315 PMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVL 368 (388)
Q Consensus 315 p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~ 368 (388)
|++.|+++.+..+ ..++|..+||.+.|.+.|..| ...+++.+....+..++..
T Consensus 328 p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~ 381 (395)
T PRK10054 328 PPGMKASYFSAQS-LGWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLML 381 (395)
T ss_pred CcccceehHhHHH-HHHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHH
Confidence 9999999988655 677999999999999999999 6666666555555554443
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.4e-26 Score=208.53 Aligned_cols=315 Identities=11% Similarity=0.050 Sum_probs=196.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+.++.+++.++++++++++.+++.|+++|++.+... ....+++| ++|+++|++++++.....++
T Consensus 95 ~dr~G~r~~~~~~~~~~~~~~~~~~~~~s~~~l~~~r~l~G~~~~~~~-~~~~~i~~---~~~~~~rg~a~g~~~~~~~~ 170 (476)
T PLN00028 95 CDLYGPRYGSAFLLMLTAPAVFCMSLVSSATGFIAVRFFIGFSLATFV-SCQYWMST---MFNGKIVGTANGIAAGWGNL 170 (476)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhH-HHHHHHHH---hcChhheeHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999988654 45667899 99999999999998766666
Q ss_pred HHHHHHHHHhH-------------HhHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCC
Q psy13784 81 GLLQVYFMGSL-------------LRYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQ 147 (388)
Q Consensus 81 G~~~~~~~~~~-------------~~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (388)
|..+++.+... .+||+.|++.+++.++..+..+++.+|.|+ ++.++.+ + . .
T Consensus 171 g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p~-----~~~~~~~----~--~-~---- 234 (476)
T PLN00028 171 GGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLPD-----GNYRELK----K--S-G---- 234 (476)
T ss_pred HHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCCC-----CchhhHH----h--c-C----
Confidence 66555443321 279999999999988877776664444442 0000000 0 0 0
Q ss_pred CCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHH
Q psy13784 148 TEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIG 226 (388)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~ 226 (388)
+.++......+++.+++++.+...+ . .+...........+.|.++. +.|++..+++......
T Consensus 235 ------------~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~~p~~l~~~~g~s~~~a~~~~~~~ 297 (476)
T PLN00028 235 ------------TMPKDSFSKVLRYGVTNYRTWILAL----T-YGYSFGVELTMDNIIAEYFYDRFGLSLETAGAIAASF 297 (476)
T ss_pred ------------ccccccHHHHHHHHHcCchhHHHHH----H-HHHHHHHHHHHHhHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 0000011123344555555432211 1 11122222345566777765 4599888899999999
Q ss_pred HHHHHHHHHhhheeecccCCch-------HHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHH
Q psy13784 227 GLIIFASVISISFILPHTGVKP-------LSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASS 299 (388)
Q Consensus 227 ~~~~~~~~~~~g~l~d~~g~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
.++..+++++.|+++||++||+ .......+.++..+.+.. ..+.+.......+...+..
T Consensus 298 ~~~~~ig~~~~G~lsDr~~~r~~~~~r~~~~~~~~~l~~i~~~~~~~--------------~~~~~~~~~~~~l~~~~~~ 363 (476)
T PLN00028 298 GLMNLFARPAGGYLSDVAARRFGMRGRLWALWIVQTLGGVFCIWLGR--------------ANSLGAAIVVMILFSIFVQ 363 (476)
T ss_pred HHHHHHHHhhhHHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHHhcc--------------cchHHHHHHHHHHHHHHHH
Confidence 9999999999999999998652 111111121121121111 0111222222222222222
Q ss_pred hccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhhe
Q psy13784 300 VGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLA 369 (388)
Q Consensus 300 ~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~ 369 (388)
. ..+..+.+..+..| +.++++.|+.+..+++|+.++|.+.+. .+..+ ...+++.+++.+++.++.++
T Consensus 364 ~-~~~~~~~~~~~~~~-~~~g~~~g~~~~~g~lg~~i~~~l~~~-~~~~~y~~~f~~~~~~~~i~~~~~~~ 431 (476)
T PLN00028 364 A-ACGATFGIVPFVSR-RSLGVISGLTGAGGNVGAVLTQLLFFT-GSSYSTETGISLMGVMIIACTLPVAF 431 (476)
T ss_pred H-hhhhhcccCcccCh-hhchhhhhhhhccccHHHHHHHHHHHh-cCCccHhhHHHHHHHHHHHHHHHHHh
Confidence 2 22334466667654 679999999988888888888776541 12223 45666766666666654433
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.8e-24 Score=189.72 Aligned_cols=284 Identities=14% Similarity=0.103 Sum_probs=197.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++.++..+..++.+.+ .+++++.+++.|++.|++.+...+....++.| +++ ++|++++++.+.+.++
T Consensus 59 ~dr~g~r~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~ 133 (355)
T TIGR00896 59 ARRFGEERSVAAGLLLIAAGILIR-SAPGTALLFAGTALIGVGIAIINVLLPSLIKR---DFP-QRVGLMTGLYSMALMG 133 (355)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHHHHHhccchHHHHH---hCc-chhhHHHHHHHHHHHH
Confidence 499999999999999988888877 78999999999999999999888888888888 775 6899999999999999
Q ss_pred HHHHHHHHHhHH------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccc
Q psy13784 81 GLLQVYFMGSLL------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRG 154 (388)
Q Consensus 81 G~~~~~~~~~~~------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
|..+++.++..+ +||+.|...++..++... .+ +||+++ +.++ +
T Consensus 134 g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~~~~--~~-~~~~~~------~~~~-----------~----------- 182 (355)
T TIGR00896 134 GAALAAAATVPLAQHSGGHWQQALAWWALPALLALL--AW-IPQVRR------RVAA-----------N----------- 182 (355)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH--HH-hhhhcc------ccCC-----------C-----------
Confidence 999998887766 399998877665443322 22 454321 0000 0
Q ss_pred cccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHH
Q psy13784 155 DAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASV 234 (388)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~ 234 (388)
++.++...++.+|++..+...+ ..+.....+.....|.|.++++.|++..+.+.......++.++++
T Consensus 183 --------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~lp~~~~~~g~~~~~~g~~~~~~~~~~i~~~ 249 (355)
T TIGR00896 183 --------QTTTRLTPVRIWRSPLAWQVTV-----FFGLQSGLYYSLIGWLPAILISHGASAATAGSLLALMQLAQAASA 249 (355)
T ss_pred --------CCCCCCCCchhhcCHhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHH
Confidence 0000112334555554332211 112222234556778899998889998899999999999999999
Q ss_pred HhhheeecccC-CchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhc-c
Q psy13784 235 ISISFILPHTG-VKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLG-E 312 (388)
Q Consensus 235 ~~~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 312 (388)
++.|++.||++ ||+.+..+..+..++.+.+... ....... ...+.. .......+....... +
T Consensus 250 ~~~g~l~dr~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~-~~~l~g-~~~g~~~~~~~~~~~~~ 313 (355)
T TIGR00896 250 LLIPALARRVKDQRGIVAVLAVLQLVGLCGLLFA--------------PMHGLWA-WALVLG-LGQGGAFPLALTLIGLR 313 (355)
T ss_pred HhHHHHHhhhccchHHHHHHHHHHHHHHHHHHHh--------------hhhHHHH-HHHHHH-HhhhhHhHHHHHHHHHh
Confidence 99999999994 5666666666666665555331 0111111 122222 222233344445544 4
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 313 IFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 313 ~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
..+++.++...++.+...+++..++|.+.|.+.|+.|
T Consensus 314 ~~~~~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~g 350 (355)
T TIGR00896 314 SRQAAQAAALSAMAQSIGYLLAALGPLFVGVLHDISG 350 (355)
T ss_pred ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4456778999999999999999999999999999887
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.6e-24 Score=194.62 Aligned_cols=289 Identities=13% Similarity=0.070 Sum_probs=197.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHH---HhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLI---TYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTA 77 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~ 77 (388)
+||+|||+++..+..+++++.+++ .++++++.+++.|+++|+|.|...+....++.| +.++++|.+.+++.+..
T Consensus 85 ~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~---~~~~~~~~~~~s~~~~~ 161 (438)
T PRK10133 85 MKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTV---LGPESSGHFRLNLAQTF 161 (438)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHH---hCChhhHHHHHHHHHHH
Confidence 499999999999999999999886 468999999999999999999999999999999 87777777789999999
Q ss_pred HHHHHHHHHHHHhH------------------------------HhHHHHHHHhH-HHHHHHHHHHHhccCCCchHHhhc
Q psy13784 78 RAFGLLQVYFMGSL------------------------------LRYRKVAAMAA-IFSALGTILITFIIPESPAWLNSK 126 (388)
Q Consensus 78 ~~~G~~~~~~~~~~------------------------------~~w~~~f~~~~-~~~~~~~~~~~~~~pesp~~~~~~ 126 (388)
+.+|..+++.++.. .+||++|+... +..++..+......||.|. +
T Consensus 162 ~~~G~~~g~~~g~~l~~~~~~~~~~~~~~~l~~~~~~~w~~~~~~~w~~~f~~~~~v~~~~~~~~~~~~~p~~~~----~ 237 (438)
T PRK10133 162 NSFGAIIAVVFGQSLILSNVPHQSQDVLDKMTPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQS----D 237 (438)
T ss_pred HHHHHHHHHHHHHHHHhcCCcccchhhhhccChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc----c
Confidence 99999998877532 15677776433 3333333332332444221 0
Q ss_pred CChhhHHHHHHHhcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy13784 127 GRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMT 206 (388)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (388)
+.+ +++..+..++.++.+++|.++...+..+ + ..........|.+
T Consensus 238 -~~~-----------------------------~~~~~~~~~~~~~ll~~~~~~~~~l~~~-~----~~~~~~~~~~~~~ 282 (438)
T PRK10133 238 -NHS-----------------------------DAKQGSFSASLSRLARIRHWRWAVLAQF-C----YVGAQTACWSYLI 282 (438)
T ss_pred -ccc-----------------------------cccccchhhhHHHHHhCchHHHHHHHHH-H----HHHHHHHHHHHHH
Confidence 000 0000011123456677776554322221 1 1122333445666
Q ss_pred HHH-H-HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccc
Q psy13784 207 DFV-R-SSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFN 284 (388)
Q Consensus 207 ~~~-~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (388)
.++ + ..|+++.+.+.......++.++++++++++.||+++|+.+..+..+..+.++...+ . ..
T Consensus 283 ~~l~~~~~g~s~~~ag~~~~~~~~~~~vG~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~---~-----------~~- 347 (438)
T PRK10133 283 RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF---A-----------GG- 347 (438)
T ss_pred HHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH---c-----------CC-
Confidence 664 4 45999999999999999999999999999999999999888776666555444332 0 11
Q ss_pred hHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 285 LIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
........+.. .+.....|..++...|..|++ .+++.++.. ...+|+.++|.+.|.+.|..|
T Consensus 348 ~~~~~~~~l~g-lg~~~i~P~~~s~a~~~~~~~-~~~as~l~~-~~~~g~~~~~~i~G~l~~~~g 409 (438)
T PRK10133 348 HVGLIALTLCS-AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAG 409 (438)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHcccchh-hccchhHHh-HHhccchHHHHHHHHHHHhcc
Confidence 11222223333 333445588888899988765 677777776 455788999999999999876
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-27 Score=201.19 Aligned_cols=309 Identities=15% Similarity=0.052 Sum_probs=209.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+|||.||+++..|..++.++.+++++++.||++.+.|.+.|+|++...|.++++++| .+|..+|++++++++.+.++
T Consensus 92 adryNR~~v~~vG~~iW~~Av~~~~fs~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD---~f~~~~Rs~~~~ify~~ipv 168 (493)
T KOG1330|consen 92 ADRYNRKRVIAVGIFIWTLAVFASGFSNHFWQVLLCRGFVGIGEASYSPIAPSLIAD---SFPDDKRSRVLGIFYFAIPV 168 (493)
T ss_pred HhhcCcceEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhcccchhHhhh---cCcchhhhHHHHHhhhhccc
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH-----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcccc
Q psy13784 81 GLLQVYFMGSLL-----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGD 155 (388)
Q Consensus 81 G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (388)
|..+|.+++..+ .|||.|...++++++..++.+++++|++|- ..++. . .
T Consensus 169 GsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~rg-----a~~~~-------~-------------~- 222 (493)
T KOG1330|consen 169 GSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPERG-----ARDEV-------D-------------G- 222 (493)
T ss_pred ccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCcccc-----ccccc-------c-------------c-
Confidence 999999998888 699999999999999999999988887531 00000 0 0
Q ss_pred ccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HcCCCCCcHHHHHHHHHHHHH
Q psy13784 156 AESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR----SSGFHLLNPYFITVIGGLIIF 231 (388)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~s~~~~~~~~~~~~~~~~ 231 (388)
..+..++.....++.+...+++.+....+-.....+. ...+.+|.|.+.. -.|++..+...+..+...++.
T Consensus 223 ~~~~~~~~ts~~kDl~~l~~~~v~v~~sl~~~a~~fv-----~Gs~sww~p~~~~~~~~~~~~~~~~~~ifg~vt~~~G~ 297 (493)
T KOG1330|consen 223 ENKMVKPFTSVWKDLKVLAKIKVFVLSSLGIIAAQFV-----IGSLSWWAPAFIYYSYELIGFDHNATLIFGGVTCAGGS 297 (493)
T ss_pred CCcCCCCccchHHHHHHHHccCceeeehHHHHHHHHh-----ccccchhhhhHHHHHHHHhCCccccchhhhhHHHhhch
Confidence 0000011112223344445545444444333333332 2344555555543 337777788888888999999
Q ss_pred HHHHhhheeecccC----CchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchh
Q psy13784 232 ASVISISFILPHTG----VKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPY 307 (388)
Q Consensus 232 ~~~~~~g~l~d~~g----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (388)
+|.+++|.++||+. +-..........+.+......+...... ......+..++...+......... ....
T Consensus 298 lGvl~Ggiisd~~~~~~~~~~~~~~~q~~~~~g~~~s~~~L~~~~~-----~~~~s~~~~~il~~~g~~~~~~~~-a~n~ 371 (493)
T KOG1330|consen 298 LGVLFGGIISDKLSRIFPNSGTLRASQLSAALGAPLSIPFLFLFPA-----FTSSSMIFGLILFLVGETISWFNW-ATNN 371 (493)
T ss_pred hhheehHHHHHHHHHhcccccchhHHHHHHhhhhhHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHhccc-cccc
Confidence 99999999999943 2222223222222222211111111100 001122222222222222222333 3344
Q ss_pred hhhccCCchhhHHHHHHHHHHHHHH-HHHHHHHHhHHHHhhcc
Q psy13784 308 LMLGEIFPMEVKGVAAGLATCLAYI-FGFFAVKTWPTLHLALG 349 (388)
Q Consensus 308 ~~~~~~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~g~l~~~~g 349 (388)
-+..|+.|++.|.++.++...+..+ |.+-+|++.|.+.|+..
T Consensus 372 ~i~l~vV~p~~Rt~a~a~~~~~~h~fgd~~~p~ivGilsd~l~ 414 (493)
T KOG1330|consen 372 PIFLEVVPPSRRTTAYALDTVFEHIFGDAASPYIVGILSDKLR 414 (493)
T ss_pred ceeeEecCcccccHHHHHHHHHHHHhccCCCcceehhHHHHhh
Confidence 6788999999999999999888775 55555669999988764
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.1e-23 Score=189.01 Aligned_cols=302 Identities=12% Similarity=-0.012 Sum_probs=211.8
Q ss_pred CCCCCchhHH----HHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHH
Q psy13784 1 MDKLGRKPAI----ILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATT 76 (388)
Q Consensus 1 sDr~Grr~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~ 76 (388)
+||+|||+.. ..+..+..+ ..+.++++++.+++.|.++|.+.+...|...++..+ + +++|++..+....
T Consensus 63 ~d~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~l~~~~~l~~~~~~~~~p~~~al~~~---~--~~~~~~~~g~~~~ 135 (382)
T TIGR00902 63 IKDANHIIIALRLLALASAIFAA--AFSAGAHNAWLLFIAIGLFALFFSAGMPIGDALANT---W--QKQFGLDYGKVRL 135 (382)
T ss_pred HHhcCcHHHHHHHHHHHHHHHHH--HHHHhhhhHHHHHHHHHHHHHHHccchhHHHHHHHH---H--HHHcCCCccHHHH
Confidence 5899985433 222222222 344577999999999999999998888988888766 4 5788999999999
Q ss_pred HHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCc
Q psy13784 77 ARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTS 152 (388)
Q Consensus 77 ~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (388)
..++|.+++|++++.+ |||..|++.++...+. +.... ++|+++ +++.++
T Consensus 136 ~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~~~-~~~~~-~~~~~~----~~~~~~--------------------- 188 (382)
T TIGR00902 136 IGSAAFIIGSALFGGLIGMFDEQNILAILTAGLAFM-LIGFL-IKPTIP----PKDAIP--------------------- 188 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHH-HHHHH-cCCCCC----CCcccc---------------------
Confidence 9999999999998888 9999998876553333 23333 444321 000000
Q ss_pred cccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHH
Q psy13784 153 RGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFA 232 (388)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~ 232 (388)
++++.+.++..+.+|+|+++...+...+ ..........+.|.++++.|.++.+.+.......+..++
T Consensus 189 --------~~~~~~~~~~~~~l~~~~~~~~l~~~~l-----~~~~~~~~~~~~~~~l~~~g~s~~~~g~l~~~~~~~~i~ 255 (382)
T TIGR00902 189 --------EDESQGDSAFIALLKNPMNLRFLAAVCL-----IQGAHAAYYGFSAIYWQAAGISASATGLLWGIGVLAEII 255 (382)
T ss_pred --------ccccccchhHHHHHcChHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHH
Confidence 0000112235677777765543322222 222345566688888888899999999999999999999
Q ss_pred HHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhcc
Q psy13784 233 SVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGE 312 (388)
Q Consensus 233 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (388)
+..+.+++.||+++|+.+..+.....+....+.. .++.+..+..-.+....++... +....++.+
T Consensus 256 ~~~~~~~l~~r~g~~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~~q~l~g~~~~~~~-~~~~~~i~~ 320 (382)
T TIGR00902 256 IFAFSNKLFQNCSARDLLLISAIACVGRWAIIGA--------------IEAFPLIFLLQILHCGTFAVCH-LAAMRYIAA 320 (382)
T ss_pred HHHHhHHHHhhCCHHHHHHHHHHHHHHHHHHHHh--------------HhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHh
Confidence 9999999999999999999888888888777654 1233444444444444444433 555578888
Q ss_pred CCchhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHhhcccchhhHHHHHHHHHHH
Q psy13784 313 IFPMEVKGVAAGLATC-LAYIFGFFAVKTWPTLHLALGNGIFFFYGLVAAIGTA 365 (388)
Q Consensus 313 ~~p~~~r~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 365 (388)
. |+++|+++.++++. ...+|..++|.+.|.+.|..|...++..+.+.+++.+
T Consensus 321 ~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (382)
T TIGR00902 321 Q-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGAGTFVFMAIIAAAAFF 373 (382)
T ss_pred C-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 7 99999999999874 5679999999999999999986667777777765544
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-25 Score=201.84 Aligned_cols=219 Identities=13% Similarity=0.176 Sum_probs=176.7
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
.||++-.+.+....+++++..++....+|++.+++.|++.|+.++..+|....+++. |+.+++|++.++++.+..++
T Consensus 105 ~~r~~ls~~l~~~~~~w~~~~~~~~~~~s~~~~ialr~llGl~es~~wP~~~~~lg~---wy~~~e~g~r~~~~~a~~~~ 181 (495)
T KOG2533|consen 105 GDRFPLSKGLSVSGILWGLFGFLTAAVHSFPGLIALRFLLGLFESGGWPGVVAILGN---WYGKSERGLRMGIWYASASL 181 (495)
T ss_pred HHhCChHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcccchHHHHHHHh---hcChhhhhhhHHHHHHhcch
Confidence 488998899999999999999888889999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----------hHHHHHHHhHHHHHHHHHHHHhccCCCch--HHhhcCChhhHHHHHHHhcCCCCCCCC
Q psy13784 81 GLLQVYFMGSLL----------RYRKVAAMAAIFSALGTILITFIIPESPA--WLNSKGRRGDAEWAAKRLRLGPPSNQT 148 (388)
Q Consensus 81 G~~~~~~~~~~~----------~w~~~f~~~~~~~~~~~~~~~~~~pesp~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (388)
|.++|++++..+ ||||.|++.++++++..++.++++|+.|. +..++++++-. .++.++.+...
T Consensus 182 g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~ek~~~---~~~~~~~~~~~-- 256 (495)
T KOG2533|consen 182 GNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDEEKELV---VERLRESPSGG-- 256 (495)
T ss_pred hhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchHHHHHH---HHHHHhccCCC--
Confidence 999999999883 99999999999999999999999999996 22222221111 11111111100
Q ss_pred CCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHH
Q psy13784 149 EPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNPYFITVIGG 227 (388)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~ 227 (388)
.+++.++.++++.+++|..+...+ ..++.....+.+.+|+|.++++ .|+|..++..+..+..
T Consensus 257 ------------~~~~~~~~~~~~a~~dp~vw~~~l-----~~~~~~lv~~~~~~~lpl~l~~~~~~s~~~a~~ls~~~~ 319 (495)
T KOG2533|consen 257 ------------IENKFKWKGFKEALKDPGVWPFSL-----CYFFLKLVNYGFSYWLPLYLKSNGGYSELQANLLSTPYD 319 (495)
T ss_pred ------------cccccCHHHHHHHHhchhHHHHHH-----HHHHHhhccccHHHHHHHHHHcCCCcChHHhccccchHH
Confidence 011155677888898887664333 3333344467789999999987 5699999999999999
Q ss_pred HHHHHHHHhhheeeccc
Q psy13784 228 LIIFASVISISFILPHT 244 (388)
Q Consensus 228 ~~~~~~~~~~g~l~d~~ 244 (388)
++++++.+++|+++||+
T Consensus 320 ~~g~v~~i~ag~lsdr~ 336 (495)
T KOG2533|consen 320 VGGIVGLILAGYLSDRL 336 (495)
T ss_pred hhhHHHHHHHHHHHHHH
Confidence 99999999999999994
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-23 Score=189.31 Aligned_cols=289 Identities=16% Similarity=0.121 Sum_probs=199.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+..+..++.+++.++++++.+++.|++.|++.+...+....+..| .+++++|+++.+....+..+
T Consensus 67 ~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 143 (394)
T PRK11652 67 SDRVGRRPVILVGMSIFILGTLVALFAHSLTVLIAASAIQGLGTGVGGVMARTLPRD---LYEGTQLRHANSLLNMGILV 143 (394)
T ss_pred HHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhhhHHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999998888888888899 89999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..++|.+++.+ +||+.|++.++..++..+...++.||+++.. ++++
T Consensus 144 ~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-------------------------- 194 (394)
T PRK11652 144 SPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRPAD---ARRT-------------------------- 194 (394)
T ss_pred HHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCccc---cchh--------------------------
Confidence 999999988877 8999999988887766666555578865310 0000
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHHHHHHH
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNPYFITVIGGLIIFASVI 235 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~ 235 (388)
+.++++++.++++..+........ ...+......+.+.++++ .|+++.+.+.......++.+++..
T Consensus 195 --------~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~ 261 (394)
T PRK11652 195 --------RVLASYRTLLSNRRFNCYLLMLIG-----TLAGIAVFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAW 261 (394)
T ss_pred --------HHHHHHHHHHcChHHHHHHHHHHH-----HHHHHHHHHHhChHHHHHHcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 011234455565554432222111 112233444455666665 688888888888788888888888
Q ss_pred hhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCc
Q psy13784 236 SISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFP 315 (388)
Q Consensus 236 ~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p 315 (388)
+.+++.||.+++... ......++.+.+........ ...+.......+...+.+. ..|....+..|.+|
T Consensus 262 ~~~~l~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~ 329 (394)
T PRK11652 262 FAGRPNKRFSTLMWQ--SVICCLLAGLLMWIPGWFGV---------MNVWTLLVPAALFFFGAGM-LFPLATSGAMEPFP 329 (394)
T ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc---------ccHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhcc
Confidence 889998888733322 22222222222211110000 1223333333333333333 34666677888887
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy13784 316 MEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA 347 (388)
Q Consensus 316 ~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 347 (388)
+ .++++.++.+....+|+.+++.+.+.+.+.
T Consensus 330 ~-~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~ 360 (394)
T PRK11652 330 Y-LAGTAGALLGGLQNIGSGLAALLSAMLPQT 360 (394)
T ss_pred c-cchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 4 689999999999999999999988876544
|
|
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.1e-24 Score=215.90 Aligned_cols=295 Identities=14% Similarity=0.058 Sum_probs=200.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHH---HhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLI---TYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTA 77 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~ 77 (388)
+||+|||++++++.++..++.++. ..+++++.+++.|+++|++.+...+...+++.| ++|+++|++++++...+
T Consensus 71 ~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~---~~~~~~r~~~~~~~~~~ 147 (1146)
T PRK08633 71 ADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPE---LVGKENLSRANGLLEAF 147 (1146)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHH---hcCcccchhhhhHHHHH
Confidence 699999999999887766555544 345889999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhHH-h------------HHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCC
Q psy13784 78 RAFGLLQVYFMGSLL-R------------YRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPP 144 (388)
Q Consensus 78 ~~~G~~~~~~~~~~~-~------------w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~ 144 (388)
..+|.++++.+++++ . |++.+.+..+...+..++..+.+||+|+....+++.+
T Consensus 148 ~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------- 213 (1146)
T PRK08633 148 TIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYRLPKVPAAAPEVFDKK-------------- 213 (1146)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhcCcCCCCCCccccccc--------------
Confidence 999999999998887 2 2344444444333333444444788764211100000
Q ss_pred CCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCC-cHHHH
Q psy13784 145 SNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLL-NPYFI 222 (388)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~-~~~~~ 222 (388)
.....+.....+...++++..+...+...+.+ ........+.|.+++ ..|++.. ..+..
T Consensus 214 --------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~g~s~~~~~g~~ 274 (1146)
T PRK08633 214 --------------KYLFPKLLWRNLKLLRSDRVLWLAIIGLSYFW-----FISQLAQANFPAYAKEVLGLDNTFQVQYL 274 (1146)
T ss_pred --------------ccccHHHHHHHHHHHhcCcHHHHHHHHHHHHH-----HHHHHHHHhhHHHHHHHhCCCcHHHHHHH
Confidence 00000011223444555554333222222111 123344556666665 5688887 88899
Q ss_pred HHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhcc
Q psy13784 223 TVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGF 302 (388)
Q Consensus 223 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (388)
....+++.+++.++.+++.||+++++.+.++.++.+++.+.+... .+.+...+..++.+.+.+ ..
T Consensus 275 ~~~~~ig~~~g~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g~~~~-~~ 339 (1146)
T PRK08633 275 LAASAIGIGIGSLLAGRLSGRHIELGLVPLGALGLALSLFLLPTA--------------PSLASVLVLFFLFGFSAG-LF 339 (1146)
T ss_pred HHHHHHHHHHHHHHHHHHhCCceEccchhHHHHHHHHHHHHHHHh--------------hhHHHHHHHHHHHHHHHH-Hh
Confidence 999999999999999999999999888877777666666655441 122233333333333333 33
Q ss_pred ccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q psy13784 303 LPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHL 346 (388)
Q Consensus 303 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~ 346 (388)
.+...+++.+..|++.||+++|+.+++.+++..+++.+.+.+..
T Consensus 340 ~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~ 383 (1146)
T PRK08633 340 IVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSG 383 (1146)
T ss_pred hHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556888999999999999999999999999888877766543
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.8e-24 Score=191.39 Aligned_cols=288 Identities=16% Similarity=0.159 Sum_probs=189.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSL-TITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARA 79 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~ 79 (388)
+||+|||+.+..+.++..++.+++++++ +++.+++.|+++|++.+. .+....++.| ++|+++|+++.++.....+
T Consensus 61 ~dr~g~r~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~---~~~~~~r~~~~~~~~~~~~ 136 (366)
T TIGR00886 61 VDKFGPRYTTTLSLLLLAIPCLWAGLAVQSYSVLLLLRLFIGIAGGS-FASCMPWISF---FFPKKIQGTALGLAAGWGN 136 (366)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchh-hHhHHHHHHH---hcCHhhhhHHHHHHHHHhH
Confidence 5999999999999999999999999999 999999999999998654 5667889999 9999999999999987666
Q ss_pred HHHHHHHHHHhHH--------------hHHHHH-HHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCC
Q psy13784 80 FGLLQVYFMGSLL--------------RYRKVA-AMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPP 144 (388)
Q Consensus 80 ~G~~~~~~~~~~~--------------~w~~~f-~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~ 144 (388)
+|..+++.++..+ +||+.| +..+++..+..++.+.+.+|+|+.. + ++.+. +.
T Consensus 137 ~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~-----~~--- 203 (366)
T TIGR00886 137 MGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFVGADTPPGK----P-ATGKL-----SF--- 203 (366)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHhcccCCccc----c-cchhc-----cc---
Confidence 6666665555433 599999 4446665555555555577766310 0 00000 00
Q ss_pred CCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHH
Q psy13784 145 SNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFIT 223 (388)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~ 223 (388)
. .+.. ..+++..++..+.+++++.+...+. .+...........+.|.+++ ..|+++.+.+...
T Consensus 204 -------~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 267 (366)
T TIGR00886 204 -------K-GARW---SVGTGALGDQLKVFRDRHTWILALL-----YSVTFGSFLGVSSIFAMFFKDQFGLSKVTAGAYA 267 (366)
T ss_pred -------c-cccc---cccchhHHHHHHHHhccchhhHHHH-----HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 0 0000 0000111234556666654432221 12222224456677788886 4588888888888
Q ss_pred HHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccc
Q psy13784 224 VIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFL 303 (388)
Q Consensus 224 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (388)
....+.+++++++.+++.||+|+|+....+......+...+.... .. ..+.+.............+.+.
T Consensus 268 ~~~~~~~~~~~~~~g~l~~r~g~~~~~~~~~~~~~~~~~~~~~~~--~~--------~~~~~~~~~~~~~~~~~~g~~~- 336 (366)
T TIGR00886 268 SLGGLLGSLARPLGGAISDRLGGARKLLMSFLGVAMGAFLVVLGL--VS--------PLSLAVFIVLFVALFFFSGAGN- 336 (366)
T ss_pred HHHHHHHHHHhhccchHHHhhccchhHHHHHHHHHHHHHHHHhcC--CC--------cchHHHHHHHHHHHHHHhcccc-
Confidence 889999999999999999999998877766665555554443311 00 0012222222233333333333
Q ss_pred cchhhhhccCCchhhHHHHHHHHHHHHHHH
Q psy13784 304 PIPYLMLGEIFPMEVKGVAAGLATCLAYIF 333 (388)
Q Consensus 304 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g 333 (388)
+..+....|..| +++|+++|+.+..+++|
T Consensus 337 ~~~~~~~~~~~~-~~~g~~~g~~~~~~~~g 365 (366)
T TIGR00886 337 GSTFALVPHIFR-RATGAVSGLVGAIGNLG 365 (366)
T ss_pred chhhhcchhhch-hhcccHHHHHHHhccCC
Confidence 455677888887 57999999999888765
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-24 Score=216.25 Aligned_cols=308 Identities=12% Similarity=0.001 Sum_probs=202.4
Q ss_pred CCCCCchhHHHH---HHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHH
Q psy13784 1 MDKLGRKPAIIL---IGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTA 77 (388)
Q Consensus 1 sDr~Grr~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~ 77 (388)
+||+|||+++.. ..+...+..+.+...++++.++++|+++|++.+...|...+++.| ++++++|++++++.+++
T Consensus 76 aDr~~rk~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~~~l~gi~~a~~~p~~~a~l~~---~~~~~~~~~a~~~~~~~ 152 (1140)
T PRK06814 76 ADKYDKAKLAKILKFAEIGIAALAIYGFHLNSVPLLFAALFLMGIHSALFGPIKYSILPD---HLNKDELLGANALVEAG 152 (1140)
T ss_pred hhhccHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhchHHHHhhHh---hcCccccchhhHHHHHH
Confidence 699999997533 333333333444445899999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcc
Q psy13784 78 RAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSR 153 (388)
Q Consensus 78 ~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (388)
.++|.++||.+++++ +|++.|...++..++..++. +++|+++.- .++...+
T Consensus 153 ~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~~---------------------- 207 (1140)
T PRK06814 153 TFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLAS-LFIPKTGNA--APDLKID---------------------- 207 (1140)
T ss_pred HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHH-hhCCCCCCC--CCCCeec----------------------
Confidence 999999999999998 99999955555555444444 447765420 0000000
Q ss_pred ccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHHHH
Q psy13784 154 GDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNPYFITVIGGLIIFA 232 (388)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~ 232 (388)
....+.....++...+++.++...+.....++ ....+..+.|.++++ +|.++...+......+++.++
T Consensus 208 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~p~~~~~~~g~~~~~~g~~~~~~~~g~~i 276 (1140)
T PRK06814 208 ------RNIIRSTITLLKYAKADKRIWLAILGISWFWL-----VGAVVLSQLPLLAKETLGGDENVATLFLAVFSVGVAV 276 (1140)
T ss_pred ------cchHHHHHHHHHHHhcCchHHHHHHHHHHHHH-----HHHHHHHHhHHHHHHHcCCchHHHHHHHHHHHHHHHH
Confidence 00000111234455555544433222222221 234556678888864 588888999999999999999
Q ss_pred HHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccc------cccccchHHHHHHHHHHHHHHhccccch
Q psy13784 233 SVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNF------EWGFFNLIPLAALVLNLVASSVGFLPIP 306 (388)
Q Consensus 233 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (388)
+.++.+++.|+..+++.+..+.++.++..+.+.+............ ....+.+...+..++.+.+. ....+..
T Consensus 277 g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~ 355 (1140)
T PRK06814 277 GSFLASKLSEGRITLLYVPIGALLMGLFGLDLAFASSSVPAEPAQLKSILVFLSKRHGWRILIDLFGLAAAG-GLYIVPL 355 (1140)
T ss_pred HHHHHHHHhCCceeeeeehHHHHHHHHHHHHHHhcccccccccccccchhhhhcccccHHHHHHHHHHHHHH-HHhHHHH
Confidence 9999999998887776655555554444443322100000000000 00012333333333333333 3333456
Q ss_pred hhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy13784 307 YLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL 348 (388)
Q Consensus 307 ~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 348 (388)
.+++.+..|++.||+++|+.++...++..+++.+.+.+.+..
T Consensus 356 ~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~ 397 (1140)
T PRK06814 356 FAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG 397 (1140)
T ss_pred HHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 689999999999999999999999999999999999987543
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=188.83 Aligned_cols=312 Identities=16% Similarity=0.092 Sum_probs=201.9
Q ss_pred CCCC-----Cchh-HHHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHH
Q psy13784 1 MDKL-----GRKP-AIILIGIVGIIGWLLITYS---LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLA 71 (388)
Q Consensus 1 sDr~-----Grr~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~ 71 (388)
+||+ |||| .+..+..+.+++.....+. ++++.+.+..++.++..+...+...+++.| +.|+|+|+++.
T Consensus 56 ~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~r~~~~ 132 (402)
T PRK11902 56 MDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFCPPHAALWPLAGLAVLVAFLSASQDIVFDAYSTD---VLHPEERGAGA 132 (402)
T ss_pred HHcccccCCCcchhHHHHHHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcChhhhhHHH
Confidence 4888 8876 6888888888888887777 457778888888888888888999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHH-----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCC
Q psy13784 72 TWATTARAFGLLQVYFMGSLL-----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSN 146 (388)
Q Consensus 72 ~~~~~~~~~G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (388)
++...+..+|.++++.++..+ +||..|++.++..++..+... ++||+++.. ++.++.
T Consensus 133 ~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~-~~~e~~~~~---~~~~~~-------------- 194 (402)
T PRK11902 133 AVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTL-WAPEPEVPA---RPPRSL-------------- 194 (402)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHH-hcCCCcccc---cccchh--------------
Confidence 999999999999998877665 899999999888776655444 477764310 000000
Q ss_pred CCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q psy13784 147 QTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIG 226 (388)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~ 226 (388)
.++.++++.+.+++|..+.......+...... .......+.+.++.|+++.+.+......
T Consensus 195 ----------------~~~~~~~~~~l~~~~~~~~~l~~~~l~~~~~~----~~~~~~~~~l~~~~G~~~~~~g~~~~~~ 254 (402)
T PRK11902 195 ----------------GEAVVGPLRDFFSRRGAWALLLLIVLYKLGDA----FAGSLSTTFLIRGAGFSAGEVGIVNKTL 254 (402)
T ss_pred ----------------HHHHHHHHHHHHhCcCHHHHHHHHHHHHhHHH----HHHHHHHHHHHHhcCCCHHHHHHHHhHH
Confidence 00112345566777665543332222222111 1112233444456798888888777555
Q ss_pred H-HHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHH---HHHHHHHhcc
Q psy13784 227 G-LIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALV---LNLVASSVGF 302 (388)
Q Consensus 227 ~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 302 (388)
+ ++.+++.++++++.||+++|+.+..+..+..+..+.+....... ++.+....... +..+......
T Consensus 255 ~~~~~i~g~~~~g~l~~r~g~~~~l~~~~~~~~l~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~ 324 (402)
T PRK11902 255 GLAATIVGALAGGTLMVRLGLYRSLMLFGVLQAVSNLGYWVLAVTP----------KHLWTMALAIGIENLCGGMGTAAF 324 (402)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC----------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 46889999999999999999887666655554443332211111 11222222221 1222222223
Q ss_pred ccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHh
Q psy13784 303 LPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHV 367 (388)
Q Consensus 303 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 367 (388)
.+....++.+.+|.+.+ +..+....++...++.+.|.+.|..| ...+...+.+++++.++.
T Consensus 325 ~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~ 386 (402)
T PRK11902 325 VALLMALCNRSFSATQY----ALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL 386 (402)
T ss_pred HHHHHHhcCCCCcHHHH----HHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 34555677777776654 44555566777767778999999999 555666666665655544
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-24 Score=198.33 Aligned_cols=338 Identities=16% Similarity=0.188 Sum_probs=236.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHH-HHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGR-FLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARA 79 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r-~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~ 79 (388)
.||+|.|++.+.|.++.+++.++.+|+++++++++.. ++.|+|.|..+......+.. +.+|+|+.+.|+...+.+
T Consensus 105 ~~rfg~R~v~i~G~~v~~~g~~lssF~~~i~~l~lt~gvi~G~G~~~~~~paiviv~~----YF~kkR~lA~Gia~~GsG 180 (509)
T KOG2504|consen 105 CNRFGCRTVMIAGGLVAALGLLLSSFATSLWQLYLTFGVIGGLGLGLIYLPAVVILGT----YFEKKRALATGIAVSGTG 180 (509)
T ss_pred HhhcCchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhccchhhhcchhhhhhh----HhHHHHHHHHhhhhccCC
Confidence 4899999999999999999999999999999988876 88999999999999988888 667889999999999999
Q ss_pred HHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCC-------CCCC
Q psy13784 80 FGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPP-------SNQT 148 (388)
Q Consensus 80 ~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~ 148 (388)
+|.++-|.+...+ |||+.+++.+.+.+-..+.....-|.+++.... .++..+.......... ....
T Consensus 181 ~G~~~~~~l~~~l~~~~G~r~~~l~~~~~~l~~~~~~~~~rp~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (509)
T KOG2504|consen 181 VGTVVFPPLLKYLLSKYGWRGALLIFGGISLNVLVAGALLRPLSPPKKPN---EEKDLRNSAASVESTPKPVELRISERD 257 (509)
T ss_pred cceeeHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHcCCCCcCCCch---hhhhhccccccccccccccccccccCC
Confidence 9999999998888 999999999999877777777755644432111 0000000000000000 0000
Q ss_pred CCCc------cccccccccccc--cccc-hh---hhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCC
Q psy13784 149 EPTS------RGDAESGAQGEQ--MSTT-NI---FKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHL 216 (388)
Q Consensus 149 ~~~~------~~~~~~~~~~~~--~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~ 216 (388)
.+.. ..+.++.+++.. ..+. .. .++++++. ++.+.........++.....++|.+.++.|++.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ll~~~~-----fl~~~~~~~~~~~g~~~p~~~l~~~~~~~g~~~ 332 (509)
T KOG2504|consen 258 SGLKKLSLSNLATLKRGPDKWRNSPLQAFLSMLDLSLLKDPK-----FLLLALSNLFAYLGFNVPFVYLPSYAKSLGLSS 332 (509)
T ss_pred CCCCcccccchhhhhhCCccccccchhhhhhhhhHHHHcCch-----HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Confidence 0000 000000000000 1111 11 45666644 344445555556667888899999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHHhhheeecccCCch--HHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHH
Q psy13784 217 LNPYFITVIGGLIIFASVISISFILPHTGVKP--LSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLN 294 (388)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (388)
.+......+.++..++++++.|++.|+...++ ...++.+..+++.+.+.. ...+..+...++.
T Consensus 333 ~~aa~l~Siigi~~i~gRi~~G~laD~~~~~~~~~~~~~ll~~gl~~~~~p~---------------~~~~~~l~~~~~~ 397 (509)
T KOG2504|consen 333 NDAAFLLSIIGVSDIIGRIILGLLADKPGIRALVLFLLTLLIAGLARLFLPF---------------ATTYVGLIVFSIL 397 (509)
T ss_pred hhhHHHHHHHHHhhhhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHH---------------hccHHHHHHHHHH
Confidence 99999999999999999999999999988443 444444455555433333 2334455555555
Q ss_pred HHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-c-chhhHHHHHHHHHHH
Q psy13784 295 LVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-N-GIFFFYGLVAAIGTA 365 (388)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~-~~~~~~~~~~~~~~~ 365 (388)
.+.....+.......+.|..+.++-..+.|+...+..++..+||.+.|.+.|..+ + ..+...+...+++..
T Consensus 398 fG~~~g~~~~l~~~i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~tg~Y~~~f~~~g~~~~~s~~ 470 (509)
T KOG2504|consen 398 FGFCVGSFSSLTPVILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDITGNYDHAFYFCGLCFLLSAV 470 (509)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeeccCCeeeehhhcChHHHHHHH
Confidence 5555555556665688999999999999999999999999999999999999998 4 445555555444443
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-23 Score=189.40 Aligned_cols=319 Identities=14% Similarity=0.087 Sum_probs=206.5
Q ss_pred CCCCCc-hhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhc--------ccccccCchhhhHHH
Q psy13784 1 MDKLGR-KPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIA--------ESIMVQNTKLRGSLA 71 (388)
Q Consensus 1 sDr~Gr-r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~--------~~~~~~~~~~r~~~~ 71 (388)
+||+|| |+++.++.++.+++..+..+.++++.+.+.|++.|++.+...+...++.. | ......|.+..
T Consensus 62 ~dr~g~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~g~~---~~~~~~~~r~~ 138 (418)
T TIGR00889 62 ADKWLSAQKVYAVCHFAGALLLFFAAQVTTPAGMFPVLLANSLAYMPTIALTNSISYANLPQAGLD---VVTDFPPIRVM 138 (418)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhhcCCC---chhcCCCeeee
Confidence 599865 77888888888899989999999999999999999987777766655432 2 22223444554
Q ss_pred HHHHHHHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCC
Q psy13784 72 TWATTARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQ 147 (388)
Q Consensus 72 ~~~~~~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (388)
| .+|.++++.+++.+ .|+ +|++.++..++..+..+ ++||+|+- +++.+.
T Consensus 139 G------~lG~~ig~~l~g~l~~~~~~~-~f~~~~~~~~~~~~~~~-~~~e~~~~---~~~~~~---------------- 191 (418)
T TIGR00889 139 G------TIGFIAAMWAVSLLDIELSNI-QLYITAGSSALLGVFAL-TLPDIPVA---KSTAKM---------------- 191 (418)
T ss_pred h------hHHHHHHHHHHHHhcccchhH-HHHHHHHHHHHHHHHHh-cCCCCCCC---cccccc----------------
Confidence 4 35666666666655 344 46666666666555544 48887531 000000
Q ss_pred CCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCC--------CcH
Q psy13784 148 TEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHL--------LNP 219 (388)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~--------~~~ 219 (388)
+ .++..+.+..+.+|+|+++...+..++... .......+.+.+.++.|.++ ...
T Consensus 192 ----------~---~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 253 (418)
T TIGR00889 192 ----------S---IKVMLGLDAFILFKNKRMAIFFFFSMLLGA-----PLQITNIFGNGFLHEFGRNPEFADSFVVKNA 253 (418)
T ss_pred ----------C---HHHHhhhhHHHHhcCCCeeeHHHHHHHHHh-----HHHHHHHhHHHHHHHhcccccccchhhhhhH
Confidence 0 000011123456677765543333222222 12234455677776666543 456
Q ss_pred HHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHH
Q psy13784 220 YFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASS 299 (388)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
+.......+..+++.+..+++.||+|+|+.+..+..+..++...+... ... ....+.......+...+..
T Consensus 254 g~~~~~~~i~~i~~~~~~g~l~dr~g~r~~l~~~~~~~~v~~~l~~~~---~~~-------~~~~~~l~l~~~l~g~~~~ 323 (418)
T TIGR00889 254 SIWMSLSQFSEIFFILTIPFFLKRFGIKKVMLLSLVAWALRFGFFAYG---DPE-------YFGYALLFLSMIVYGCAFD 323 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc---Ccc-------hhhHHHHHHHHHHHHHHHH
Confidence 888888889999999999999999999999998888887776655431 000 0011112222222322222
Q ss_pred hccccchhhhhccCCchhhHHHHHHHHH-HHHHHHHHHHHHHhHHHHhhcc-------cchhhHHHHHHHHHHHHhheec
Q psy13784 300 VGFLPIPYLMLGEIFPMEVKGVAAGLAT-CLAYIFGFFAVKTWPTLHLALG-------NGIFFFYGLVAAIGTAHVLAYL 371 (388)
Q Consensus 300 ~~~~~~~~~~~~~~~p~~~r~~~~~~~~-~~~~~g~~~~~~~~g~l~~~~g-------~~~~~~~~~~~~~~~~~~~~~~ 371 (388)
...+....++.|.+|++.|+++.|+.+ ....+|..+||.+.|.+.|..| ...+...+++.+++.++.+++.
T Consensus 324 -~~~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~ 402 (418)
T TIGR00889 324 -FFNISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFF 402 (418)
T ss_pred -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 233555578899999999999999997 5678999999999999999854 3456677777777777777788
Q ss_pred cCCCCCC
Q psy13784 372 PETKGKS 378 (388)
Q Consensus 372 ~~~~~~~ 378 (388)
+|++++.
T Consensus 403 ~~~~~~~ 409 (418)
T TIGR00889 403 KYSHNAI 409 (418)
T ss_pred CCcccCC
Confidence 8776543
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-23 Score=186.12 Aligned_cols=285 Identities=15% Similarity=0.078 Sum_probs=198.4
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHh---hcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITY---SLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTA 77 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~ 77 (388)
+||+|||+++..+.++++++.+++.. .++++.+++.|++.|+|.|...+....++.+ ..|+++|++.+++.+..
T Consensus 62 ~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~ 138 (410)
T TIGR00885 62 MKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILV---MGPESTATRRLNLAQSF 138 (410)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHH---HCCHhHHHHHHHHHHHH
Confidence 49999999999999999999988654 3689999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHhHH------------------------------hHHHHHHHhHHHHHHHHHHHHh-ccCCCchHHhhc
Q psy13784 78 RAFGLLQVYFMGSLL------------------------------RYRKVAAMAAIFSALGTILITF-IIPESPAWLNSK 126 (388)
Q Consensus 78 ~~~G~~~~~~~~~~~------------------------------~w~~~f~~~~~~~~~~~~~~~~-~~pesp~~~~~~ 126 (388)
.++|..+++.++..+ +||++|++.+++.++..++..+ -.||.++
T Consensus 139 ~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~~~~~~p~~~~----- 213 (410)
T TIGR00885 139 NPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLIMLTKMPALNH----- 213 (410)
T ss_pred HHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-----
Confidence 999999998887654 3999999988877766554433 1333110
Q ss_pred CChhhHHHHHHHhcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy13784 127 GRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMT 206 (388)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (388)
+ ++ +++....+..+.+++|+.+...+. .+++. ........|.+
T Consensus 214 ~--~~------------------------------~~~~~~~~~~~~~~~~~~~~~~l~-~f~yv----g~e~~~~s~l~ 256 (410)
T TIGR00885 214 S--DA------------------------------KQISFSASLSRLARIRHYREGVIA-QFFYV----GVQIMCWTFII 256 (410)
T ss_pred c--cc------------------------------ccccchhhHHHHHhChhHHHHHHH-HHHHH----HHHHHHHHHHH
Confidence 0 00 000011123345565554432222 22222 22334556777
Q ss_pred HHHHHcC--CCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccc
Q psy13784 207 DFVRSSG--FHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFN 284 (388)
Q Consensus 207 ~~~~~~g--~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (388)
.+.++.+ .+................+|+++++++.||+++|+.+........+..++... ...
T Consensus 257 ~y~~~~~~~~~~~~a~~~~~~~~~~~~vGR~~~~~l~~r~~~~~~l~i~~~~~~~~~ll~~~---------------~~~ 321 (410)
T TIGR00885 257 QYAVRLIPGMTAGFAANYNIGAMVIFFISRFIGTWLISYLAAHKVLMAYAIIGMALCLGSIF---------------AGG 321 (410)
T ss_pred HHHhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHH---------------cCC
Confidence 7776543 33333344555556778899999999999999999887777777666666544 011
Q ss_pred hHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy13784 285 LIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL 348 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 348 (388)
......+.+...+.+. ..|..++...+..+++.+..+.++.... +|+.+.|.+.|.+.|..
T Consensus 322 ~~~~~~l~~~glf~s~-~fp~i~sl~~~~~g~~~~~~s~~l~~~~--~Gga~~p~l~G~~~d~~ 382 (410)
T TIGR00885 322 HVGLYCLTLCSAFMSL-MFPTIYGIALKGLGQDTKYGAAGLVMAI--IGGGIVPPLQGFIIDMK 382 (410)
T ss_pred hHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhhhhhhHHHHHHHH--hccchHHHHHHHHHHHh
Confidence 2233333344444444 4488889999999988665555555544 99999999999999964
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=2e-23 Score=189.93 Aligned_cols=319 Identities=14% Similarity=0.103 Sum_probs=192.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHH---hhcc-----hhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLIT---YSLT-----ITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLAT 72 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~---~~~~-----~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~ 72 (388)
+||+|||++++++..+.++...... .++. +....++++..|.+.....+....+..+ . ++++++..+
T Consensus 70 ~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~g~~~g 144 (420)
T PRK09528 70 SDKLGLKKHLLWIISGLLVLFGPFFIYVFAPLLQYNILLGAIVGGIYLGFGFLAGAGAIEAYIER----V-SRRSGFEYG 144 (420)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhccchhhhhhHHHH----H-Hhhccccch
Confidence 5999999999887666655433221 1111 1112233333343333333333333322 1 345677888
Q ss_pred HHHHHHHHHHHHHHHHHhHH---hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCC
Q psy13784 73 WATTARAFGLLQVYFMGSLL---RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTE 149 (388)
Q Consensus 73 ~~~~~~~~G~~~~~~~~~~~---~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (388)
......++|..+++.+++.+ +|+.+|++.++..++..+..++..||.++....+ ++.
T Consensus 145 ~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----------------- 204 (420)
T PRK09528 145 RARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPDAPSTAKVA---NAL----------------- 204 (420)
T ss_pred hhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccccchhhhc---cch-----------------
Confidence 88888899999999998887 8999999988888777666666444433200000 000
Q ss_pred CCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH----HcCCCCCcHHHHHHH
Q psy13784 150 PTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR----SSGFHLLNPYFITVI 225 (388)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~g~s~~~~~~~~~~ 225 (388)
. +++++.+.++..+.+|+|..+...+........ +.....+.|.++. +.+.+..+.+.....
T Consensus 205 --~-------~~~~~~~~~~~~~~l~~~~~~~l~l~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 270 (420)
T PRK09528 205 --G-------ANASAVSLKDALALLKLPKFWFLVLYVIGVACF-----YDVFDQQFPNFFASFFATPEQGTRVFGYLNSF 270 (420)
T ss_pred --h-------cccccccHHHHHHHccCCCeEeehHHHHHHHHH-----HHHHHHHHHHHHHHHHhccCcchHHHHHHHHH
Confidence 0 000011123345667777655433322222111 1222223444433 225555567788888
Q ss_pred HHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccc
Q psy13784 226 GGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPI 305 (388)
Q Consensus 226 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (388)
..+...++.++.|++.||+++|+.+..+..+..++..++.+ .++.+.......+...... ...+.
T Consensus 271 ~~~~~~~~~~~~g~l~dr~g~~~~~~~~~~l~~~~~~l~~~--------------~~~~~~~~~~~~l~g~~~~-~~~~~ 335 (420)
T PRK09528 271 QVFLEALIMFFAPFIINRIGAKNALLLAGTIMAVRIIGSGF--------------ATGPLEVSILKLLHAFEVP-FLLVG 335 (420)
T ss_pred HHHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHHh--------------cccHHHHHHHHHHHHHHHH-HHHHH
Confidence 88889999999999999999999988877777776666544 1122333322222222222 22233
Q ss_pred hhhhhccCCchhhHHHHHHH-HHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheeccC
Q psy13784 306 PYLMLGEIFPMEVKGVAAGL-ATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPE 373 (388)
Q Consensus 306 ~~~~~~~~~p~~~r~~~~~~-~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 373 (388)
...+..|.+|++.+++..+. .++...+|..++|.+.|++.|..| ...+...+++.++..++.....++
T Consensus 336 ~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~ 405 (420)
T PRK09528 336 VFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSG 405 (420)
T ss_pred HHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcC
Confidence 44677888999999888765 677788999999999999999999 777777777777666655554444
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-22 Score=182.23 Aligned_cols=302 Identities=11% Similarity=-0.014 Sum_probs=200.2
Q ss_pred CCCCCch----hHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHH
Q psy13784 1 MDKLGRK----PAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATT 76 (388)
Q Consensus 1 sDr~Grr----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~ 76 (388)
+||+||| +.+.+...+. .......+++++.+++.|++.|++.+...+...++..+ + +++|+++.+....
T Consensus 63 ~dr~g~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~i~~~l~g~~~~~~~~~~~a~~~~---~--~~~~~~a~~~~~~ 135 (382)
T PRK11128 63 VKDPSQLIPALRLLALLTLLF--AVAFWFGAHSFWLLFVAIGLFNLFFSPLVPLTDALANT---W--QKQIGLDYGKVRL 135 (382)
T ss_pred HhhhcchHHHHHHHHHHHHHH--HHHHHHhcccHHHHHHHHHHHHHHHcccccHHHHHHHH---H--HhhccCCcchHHH
Confidence 5999984 3333222222 22334456899999999999999999999988888777 5 4567888888888
Q ss_pred HHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCc
Q psy13784 77 ARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTS 152 (388)
Q Consensus 77 ~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (388)
..++|..++|.+++.+ |||..|++.++..++..+. .++.||.++ +++.+
T Consensus 136 ~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~-~~~~~~~~~----~~~~~---------------------- 188 (382)
T PRK11128 136 WGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLG-QLLRPTIMP----QGESR---------------------- 188 (382)
T ss_pred HHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHH-HHccCCCCC----ccccc----------------------
Confidence 8899999999999887 9999999887655544333 333554321 00000
Q ss_pred cccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHH
Q psy13784 153 RGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFA 232 (388)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~ 232 (388)
++.++...++++.+|+|..+......++... .......+.|.+.++.|.++.+.+.......+..++
T Consensus 189 --------~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~ 255 (382)
T PRK11128 189 --------QQESAGWPAWKALLKEPTVWRFLLCVSLLQG-----SHAAYYGFSAIYWQAAGYSASTIGYLWSLGVVAEVL 255 (382)
T ss_pred --------cccccccchHHHHHcChhHHHHHHHHHHHHH-----HhHhHHHHHHHHHHHCCCCHhHHHHHHHHHHHHHHH
Confidence 0000112345677777765543333232222 133455566777777899888889888888899999
Q ss_pred HHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhcc
Q psy13784 233 SVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGE 312 (388)
Q Consensus 233 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (388)
..++.+++.||+++|+.+..+....+++.+.+.. .++.+..+....+.+..... ..+....+..+
T Consensus 256 ~~~~~g~l~~r~~~~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~g~~~~~-~~~~~~~~~~~ 320 (382)
T PRK11128 256 IFAFSNRLFRRWSARDLLLLSAICGVVRWGLMGS--------------TTALPWLIVIQILHCGTFTV-CHLAAMRYIAA 320 (382)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHh--------------hhhHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence 9999999999999999988888777776655543 12334334333333333333 23445566667
Q ss_pred CCchhhHHHHHHHHH-HHHHHHHHHHHHHhHHHHhhcccchhhHHHHHHHHHHH
Q psy13784 313 IFPMEVKGVAAGLAT-CLAYIFGFFAVKTWPTLHLALGNGIFFFYGLVAAIGTA 365 (388)
Q Consensus 313 ~~p~~~r~~~~~~~~-~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~ 365 (388)
. +++++++..++.+ .....|..++|.+.|.+.|..|...++..+++.+++.+
T Consensus 321 ~-~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~g~~~~~~~~~~~~~~~~ 373 (382)
T PRK11128 321 R-PGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHLGAGVFWVMALVALPALF 373 (382)
T ss_pred C-CHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 6 5556788888887 44567779999999999999885555555555554433
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-24 Score=176.32 Aligned_cols=324 Identities=15% Similarity=0.177 Sum_probs=198.7
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
|||+|||+++++|+...+++.++.+.++|+..+.+.|++.|+.-|.. ....++++| ..++|+|+++++..+..+++
T Consensus 92 SD~yGRkpvll~c~~~va~s~ll~~~S~~F~afv~aR~l~Gi~kgnl-~v~rAiisd---V~sek~r~l~ms~v~~a~~l 167 (451)
T KOG2615|consen 92 SDRYGRKPVLLACLIGVALSYLLWALSRNFAAFVLARFLGGIFKGNL-SVIRAIISD---VVSEKYRPLGMSLVGTAFGL 167 (451)
T ss_pred hhhhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch-HHHHHHHHh---hcChhhccceeeeeehhhhc
Confidence 79999999999999999999999999999977777799999987765 567899999 99999999999999999999
Q ss_pred HHHHHHHHHhHH-h---------HHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCC
Q psy13784 81 GLLQVYFMGSLL-R---------YRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEP 150 (388)
Q Consensus 81 G~~~~~~~~~~~-~---------w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 150 (388)
|.++||.+|+++ - .-.+-++..+..........+++||+-+...++++.++..+..
T Consensus 168 GfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpETL~~rk~~~~~~~~~~~~-------------- 233 (451)
T KOG2615|consen 168 GFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPETLPLRKRNDEHSTLQEAA-------------- 233 (451)
T ss_pred chhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCccccchhhcccccchhhhh--------------
Confidence 999999999998 1 2222233333333322333445999843211110000000000
Q ss_pred CccccccccccccccccchhhhhccCccchHHHHH--HHHHHHHHHhhhHHHHHHHHHHHH-HHcCCCCCcHHHHHHHHH
Q psy13784 151 TSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLII--ISLFFLFQQFSAVNVILAYMTDFV-RSSGFHLLNPYFITVIGG 227 (388)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~ 227 (388)
.++ .+..+.++..-...+++++....... .+.+..+.....+..+..+.+.+. +.+|+++.+.+.+.+..+
T Consensus 234 --~~~----~~~~~~~~~~~v~~lrn~p~~~~i~~~~i~~l~~~ly~~l~s~~~~t~~~l~~~rfg~ss~~~G~vl~~tG 307 (451)
T KOG2615|consen 234 --DDR----LALLKFARIFKVAALRNPPLLDFISVLRIFGLHYFLYLELFSGLENTVLFLTHGRFGYSSMQQGKVLSTTG 307 (451)
T ss_pred --hhh----hhhcchhhhhhhhhhcCccccchHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcCccCCChhhheeeeehhh
Confidence 000 00000011111223344433321111 111111111111222223333332 456999999999999999
Q ss_pred HHHHHHHHhhheeecccC--CchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccc
Q psy13784 228 LIIFASVISISFILPHTG--VKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPI 305 (388)
Q Consensus 228 ~~~~~~~~~~g~l~d~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (388)
+.+.+.+....+..||.+ .+-.+..+..++.-..+++.. ...+........+..+...... +-
T Consensus 308 l~m~~~ql~~~~~l~~~~~~~~a~l~~~l~~~vP~~llls~--------------~~~~~~l~~~s~l~sf~~A~~v-t~ 372 (451)
T KOG2615|consen 308 LLMLVIQLALVPILPRYKGNIKAVLLFSLLLIVPAFLLLSL--------------ARTPVVLYLGSTLKSFSTASVV-TC 372 (451)
T ss_pred HHHHHHHHhccccccccccchhhHHHHHHHHHHHHHHHHhc--------------cccchhhhHHHHHHHHHHHHhh-HH
Confidence 988888888777777766 333333333333333333322 1122333333333333333333 55
Q ss_pred hhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc--cchhhHHHHHHHHH
Q psy13784 306 PYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG--NGIFFFYGLVAAIG 363 (388)
Q Consensus 306 ~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~ 363 (388)
...+.....|+++||+.+|+..+.+.++-++||.+.|.+..+.. ...+...+.+.++.
T Consensus 373 Lt~Lv~~~~~~~qrG~~~Gi~~Sl~alaRaiGPlv~g~i~~Ws~~~~~a~~~~~~L~~~~ 432 (451)
T KOG2615|consen 373 LTSLVHKYGPQSQRGTLNGIFRSLGALARAIGPLVSGVIFSWSQGAQPAYIAWGALLLIP 432 (451)
T ss_pred HHHHHHhcCCcccchHHHHHHHHHHHHHHHhhhhhhheeEEEecCCCceeeehHHHHHHH
Confidence 55889999999999999999999999999999999998776654 44444444444444
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=186.42 Aligned_cols=293 Identities=14% Similarity=0.077 Sum_probs=194.1
Q ss_pred CCC----CCchh-HHHHHHHHHHHHHHHHHhhcc------hhHHHHHHHHHhhhccccccchhhhhccccccc-Cchhhh
Q psy13784 1 MDK----LGRKP-AIILIGIVGIIGWLLITYSLT------ITNLFIGRFLTGVSEGLSASPATIYIAESIMVQ-NTKLRG 68 (388)
Q Consensus 1 sDr----~Grr~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~-~~~~r~ 68 (388)
+|| +|||| .++.+....+++.+++.+.++ ...+++.+++.+++.+...+...++..| .. ++++|+
T Consensus 59 sDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~---~~~~~~~R~ 135 (437)
T TIGR00792 59 VDRTRTRWGKFRPWLLIGAIPFSIVLVLLFTTPDFSATGKLVYAYITYILLGLFYSFVNIPYWSLVPA---ITLDPRERE 135 (437)
T ss_pred eecCCCCCCCcchhHHHhHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcccHhhCccc---ccCCHHHHH
Confidence 576 78855 577788888888888877764 3566778888999888887777888888 66 578999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHH-----------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHH
Q psy13784 69 SLATWATTARAFGLLQVYFMGSLL-----------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAK 137 (388)
Q Consensus 69 ~~~~~~~~~~~~G~~~~~~~~~~~-----------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~ 137 (388)
+..++.+.+..+|..+++.+...+ +||+.+.+.+++.++..++.++..||.++. +.+
T Consensus 136 ~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~~~-----~~~------- 203 (437)
T TIGR00792 136 SLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERYSE-----IPK------- 203 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecCCC-----CCc-------
Confidence 999999888888876665443222 799999999999888877777767775410 000
Q ss_pred HhcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCC
Q psy13784 138 RLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHL 216 (388)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~ 216 (388)
. ++++.+.++.+++.+++|.++......++ ..........+.+.+.+. .+ ++
T Consensus 204 --------------~-------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~-~~ 256 (437)
T TIGR00792 204 --------------N-------IEKKLSLKQIFKALFKNDQLLILCLAYLF-----YNLAFNIKNGVQVYYFTYVLG-DP 256 (437)
T ss_pred --------------c-------cccCCCHHHHHHHHhCCHHHHHHHHHHHH-----HHHHHHHHcchhheeEeeecC-Ch
Confidence 0 00000112334556666654432222221 111223333344444442 23 34
Q ss_pred CcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHH
Q psy13784 217 LNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLV 296 (388)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (388)
...+.......++.+++.++.+++.||+|+|+.+..+..+..++.+.+.+. .++.+.......+...
T Consensus 257 ~~~~~~~~~~~i~~ii~~~~~~~l~~r~g~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~g~ 323 (437)
T TIGR00792 257 ELFSYMGSIAIVAGLIGVLLFPRLVKKFGRKILFAGGILLMVLGYLIFFFA-------------GSNLPLILVLIILAGF 323 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHc-------------chhHHHHHHHHHHHHH
Confidence 455666677788999999999999999999999888887777766655431 0122222222233323
Q ss_pred HHHhccccchhhhhccCCc-------hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 297 ASSVGFLPIPYLMLGEIFP-------MEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~p-------~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
+.+ ...+..+++.+|..+ ++.+|.+.|+.+....+|..+++.+.|.+.+..|
T Consensus 324 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~~G 382 (437)
T TIGR00792 324 GQN-FVTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGIIG 382 (437)
T ss_pred HHH-HHHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 322 234566678877765 4568999999999999999999999999998766
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=185.23 Aligned_cols=289 Identities=13% Similarity=0.043 Sum_probs=192.5
Q ss_pred CCCC-----CchhH-HHHHHHHHHHHHHHHHhh---cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHH
Q psy13784 1 MDKL-----GRKPA-IILIGIVGIIGWLLITYS---LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLA 71 (388)
Q Consensus 1 sDr~-----Grr~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~ 71 (388)
+||+ ||||. ++.+..+.++.....++. .+++.+....++.+++.+...+...+++.| ++|+|+|+++.
T Consensus 45 ~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~a~~~~---~~~~~~r~~~~ 121 (356)
T TIGR00901 45 VDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFLVPSTDLPLLAGLAFLIAFFSATQDIALDAWRLE---ILSDEELGYGS 121 (356)
T ss_pred HhcccCCCCCccHHHHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCHhhhchHH
Confidence 3776 99997 567778888887777777 456667777888888888888999999999 99999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHH----h--------HHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHh
Q psy13784 72 TWATTARAFGLLQVYFMGSLL----R--------YRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRL 139 (388)
Q Consensus 72 ~~~~~~~~~G~~~~~~~~~~~----~--------w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~ 139 (388)
++...+..+|.++++.++..+ + ||..|++.++..++..+..++..||+++. +++.++
T Consensus 122 ~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~~~~---~~~~~~-------- 190 (356)
T TIGR00901 122 TIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEPQED---ASVPKP-------- 190 (356)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCCCcc---cccchh--------
Confidence 999999999999999998776 6 99999999998877766666546774321 000000
Q ss_pred cCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcH
Q psy13784 140 RLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNP 219 (388)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~ 219 (388)
+.++.+..+.+.++++..+.. ......... ..........+.|.++++.|+++.+.
T Consensus 191 ----------------------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~l~~~g~~~~~~ 246 (356)
T TIGR00901 191 ----------------------LTQAVLKPIREFFQRKNMIQA-LLLLLLIVL-YKLGDSAATVLTTLFLLDMGFSKEEI 246 (356)
T ss_pred ----------------------HHHHHHHHHHHHHHhcCchHH-HHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCHHHH
Confidence 000011233444554432221 111111221 22334556677888887789988888
Q ss_pred HHHHHHHH-HHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHH
Q psy13784 220 YFITVIGG-LIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVAS 298 (388)
Q Consensus 220 ~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (388)
+......+ +..+++.++++++.||+|+|+.+..+.++..+....+.+......+ .+ ......+...... +...+.
T Consensus 247 g~~~~~~~~~~~~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~-~l~~~~ 322 (356)
T TIGR00901 247 ALVAKINGLLGAILGGLIGGIIMQPLNILYALLLFGIVQALTNAGFVWLASNGHH--DG-ITFPHLLMLFLTI-TLEAVT 322 (356)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcc--cc-cccchHHHHHHHH-HHHHHH
Confidence 87777665 5778999999999999999998887777766665544332111000 00 0001122222222 222333
Q ss_pred HhccccchhhhhccCCchhhHHHHHHHHHHHHH
Q psy13784 299 SVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAY 331 (388)
Q Consensus 299 ~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~ 331 (388)
.....+...++..|.+|+++||+.+|+.++..+
T Consensus 323 ~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 355 (356)
T TIGR00901 323 GGLGTVAFVAFLSKLSNPKFGATQMALLSSLSA 355 (356)
T ss_pred hHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 233446677999999999999999999887654
|
|
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-22 Score=182.12 Aligned_cols=311 Identities=14% Similarity=0.085 Sum_probs=220.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh-----cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYS-----LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWAT 75 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~ 75 (388)
+||+.|||+++.+.++.++..+..++. .+.+.+++.-++.|++.+...|+..+++.| ..|+++...+.++.+
T Consensus 69 aDr~drrrili~~~~~~~~~~~~L~~l~~~~~~~~~~Ll~~~fl~g~~~a~~~PA~~A~ip~---lV~~~~L~~A~al~s 145 (524)
T PF05977_consen 69 ADRFDRRRILILSQLLRALVALLLAVLAFFGLLSPWLLLILTFLLGIGSAFFNPAWQAIIPE---LVPKEDLPAANALNS 145 (524)
T ss_pred hhcccchHHHHHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hccHhhHHHHHHHHH
Confidence 699999999999998887665544432 578889999999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCC
Q psy13784 76 TARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPT 151 (388)
Q Consensus 76 ~~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (388)
...++..++||.+++.+ |-.+.|.+.++..++....... .+..++ +++ ...++..
T Consensus 146 ~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l~~-~~~~~~----~~~-~~~e~~~--------------- 204 (524)
T PF05977_consen 146 ISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISILALLR-WKPPPP----PSS-LPRERFF--------------- 204 (524)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cccccc----ccc-cchhhhh---------------
Confidence 99999999999999987 7788899888776665444444 332210 000 0000000
Q ss_pred ccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHH
Q psy13784 152 SRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLII 230 (388)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~ 230 (388)
+.-+..++-..++|..+.. +....++.+ ....+...+|.+.+ .+|.++...+.+....+++.
T Consensus 205 ------------~~l~~G~ryv~~~~~l~~~-l~~~~~~~l----~~~a~~aLlPl~a~~~l~~~a~~yGll~a~~gvGa 267 (524)
T PF05977_consen 205 ------------SALREGLRYVRSSPPLRSV-LLRSFLFNL----FASAVWALLPLFARDVLGGGASGYGLLLAAFGVGA 267 (524)
T ss_pred ------------hhHHHHHHHHhcchHHHHH-HHHHHHHHH----hhhHHHHhhhHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 0011122222223333322 221212211 12233445677775 46888889999999999999
Q ss_pred HHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhh
Q psy13784 231 FASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLML 310 (388)
Q Consensus 231 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (388)
++|+++.+++.+|+++++.+..+.+..+++.+.+++ ..+.+......++.+. ..........+..
T Consensus 268 i~Gal~~~~l~~~~~~~~lv~~~~~~~a~~~~~lal--------------~~~~~~~~~~l~l~G~-~~~~~~~~~~t~~ 332 (524)
T PF05977_consen 268 ILGALLLPRLRRRLSSRRLVLLASLLFALALLLLAL--------------SPSFWLALIALFLAGA-AWIIANSSLNTLV 332 (524)
T ss_pred HHHHHHHHHhhcccCcchhhHHHHHHHHHHHHHHhc--------------chHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 999999999999999998888888777777776655 1233443443333333 3333445556888
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHh
Q psy13784 311 GEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHV 367 (388)
Q Consensus 311 ~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 367 (388)
.+..|++.||++++++.+....+..+|..+.|.+.+..| ...+.+.++..+++.++.
T Consensus 333 Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~ 390 (524)
T PF05977_consen 333 QLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIA 390 (524)
T ss_pred HHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999 666666655555554433
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-22 Score=183.73 Aligned_cols=313 Identities=14% Similarity=0.129 Sum_probs=199.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHH---Hhh-----cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLI---TYS-----LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLAT 72 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~ 72 (388)
+||+|||+.++.+....+++.... .+. +.+..+++.|++.|++.+...+....+..| .. +++++..+
T Consensus 62 ~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~--~~~~~~~g 136 (396)
T TIGR00882 62 SDKLGLKKHLLWIISGLLVLFAPFFIYVFGPLLQSNILVGAIVGGLYLGFVFSAGAGAIEAYIEK---VS--RNSNFEYG 136 (396)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHH---hh--hhcccccc
Confidence 599999999988777665544322 122 223445677899999998888888888777 43 23445667
Q ss_pred HHHHHHHHHHHHHHHHHhHH---hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCC
Q psy13784 73 WATTARAFGLLQVYFMGSLL---RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTE 149 (388)
Q Consensus 73 ~~~~~~~~G~~~~~~~~~~~---~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (388)
......++|.++++.+++.+ +||.+|++.+++.++..++.+...||+|+. ++.. +.
T Consensus 137 ~~~~~~~~g~~~g~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~----~~---------- 195 (396)
T TIGR00882 137 KARMFGCVGWALCASIAGILFSIDPQIVFWLGSGFALILMLLLMFAKPKAPSS-------ATVA----NA---------- 195 (396)
T ss_pred hhhhhcccHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHhCCCCchh-------hhhh----cc----------
Confidence 77777888999999888877 999999999988888776666545554321 0000 00
Q ss_pred CCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc----CCCCCcHHHHHHH
Q psy13784 150 PTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSS----GFHLLNPYFITVI 225 (388)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~s~~~~~~~~~~ 225 (388)
. + .++++.+.++..+.+|+|..+...+..+.. ...+.....+.+.++++. +.+....+.....
T Consensus 196 --~----~--~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~-----~~~~~~~~~~~~~y~~~~~~~~~~~~~~~g~~~~~ 262 (396)
T TIGR00882 196 --L----G--ANASAFSLKLALELFRQRKFWMFVLYVVGV-----ACVYDVFDQQFANFFTSFFATPQQGTRVFGYVTTM 262 (396)
T ss_pred --c----c--cccCCCCHHHHHHHHcCCcHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhccccccchHHHHHHHHH
Confidence 0 0 000111223466778877654332222111 111233333455555432 4444556777788
Q ss_pred HHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccc
Q psy13784 226 GGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPI 305 (388)
Q Consensus 226 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (388)
..+...++....+++.||+++|+.+..+..+.++....... ..+.+.......+....... ....
T Consensus 263 ~~i~~~~~~~~~g~l~~r~g~~~~l~~~~~l~~l~~~~~~~--------------~~~~~~~~~~~~l~g~~~~~-~~~~ 327 (396)
T TIGR00882 263 GELLNALIMFCAPLIINRIGAKNALLIAGTIMSVRIIGSSF--------------ATTALEVVILKMLHAFEVPF-LLVG 327 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHh--------------cCChHHHHHHHHHHHHHHHH-HHHH
Confidence 88888999999999999999999988887777776655433 11223333322222222211 1122
Q ss_pred hhhhhccCCchhhHHHHHHH-HHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHh
Q psy13784 306 PYLMLGEIFPMEVKGVAAGL-ATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHV 367 (388)
Q Consensus 306 ~~~~~~~~~p~~~r~~~~~~-~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 367 (388)
...+..+..|++.+++..+. .+....+|+.+++.+.|++.|..| ...+.+.+++.++..+..
T Consensus 328 ~~~~~~~~~~~~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~~G~~~~f~~~~~~~~i~~~~~ 391 (396)
T TIGR00882 328 CFKYITSQFDVRLSATIYLIGFQFAKQLAMIFLSTLAGNMYDSIGFQGAYLVLGCIVLLFTLIS 391 (396)
T ss_pred HHHHHHHhCCcceEEEeehHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHH
Confidence 33456677788877777766 577889999999999999999999 777777777776666543
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.2e-21 Score=170.80 Aligned_cols=311 Identities=11% Similarity=-0.004 Sum_probs=194.8
Q ss_pred CCCCCchhHHHHHHHHH-HHHHHHHH-h--hcc-hhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVG-IIGWLLIT-Y--SLT-ITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWAT 75 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~-~~~~~~~~-~--~~~-~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~ 75 (388)
+||+||||..++...+. +......+ + ..+ ...++..-++.++..+...+...++..| ..++++++...+...
T Consensus 63 ~~~~g~r~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~d~~~d~~~~~---~~~~~~~~~~~~~~~ 139 (390)
T TIGR02718 63 SWRLGRRRSWVLPMQCLVSACLASLALVGPDVAGAGWAVGLLACASLASATQDIATDGMAAE---HFNGRTLAKGNAVQI 139 (390)
T ss_pred cccCCcchhHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCCHhhhhHHHHHHH
Confidence 58899999876655332 22222222 2 222 3344455566667777777788888888 888888899999998
Q ss_pred HHHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCC
Q psy13784 76 TARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPT 151 (388)
Q Consensus 76 ~~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (388)
.+..+|.++++.....+ +||..|++.++..++..+..++..||+|+ +++.
T Consensus 140 ~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~~~~~----~~~~---------------------- 193 (390)
T TIGR02718 140 AGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKDRAVA----SPEA---------------------- 193 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCCCcC----cccc----------------------
Confidence 88899999998766655 99999999999888777666663333221 0000
Q ss_pred ccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH-HH
Q psy13784 152 SRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGL-II 230 (388)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~-~~ 230 (388)
++.+..+.++.+|+|..+......++.. ........+.+.++++.|+++++.+......+. ..
T Consensus 194 -----------~~~~~~~~~~~l~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~l~~~G~s~~~ig~~~~~~~~~~~ 257 (390)
T TIGR02718 194 -----------PLARRASLFRFFRRPLAWSLLALALLSA-----MTAVSGFGLSKLYLVDAGWPLEWIGRLGMAGGAVTV 257 (390)
T ss_pred -----------chhhHHHHHHHHcCcCHHHHHHHHHHHH-----HHHHHHHHHhhHHHHhcCCCHHHHHHHHhHHHHHHH
Confidence 0011123566777776444333222221 123344456677777889999988888877764 56
Q ss_pred HHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhh
Q psy13784 231 FASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLML 310 (388)
Q Consensus 231 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (388)
+++.++.|++.||+|+|+.+..+.....+..+.......... ............+.....+... +..+...
T Consensus 258 ~~g~~~~g~l~~r~g~~~~l~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~g~~~-~~~~~~~ 328 (390)
T TIGR02718 258 LLGCGGGAWLVRRAGLWRTFILGVGLAGSLALLWFAQAAFWL--------APGIAVAWSCSAFGSLITGITS-VAIYTAF 328 (390)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccc--------CCcHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 677899999999999999887766555333322211110000 0011111111111111122222 3334555
Q ss_pred ccCCch-hhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHH
Q psy13784 311 GEIFPM-EVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTA 365 (388)
Q Consensus 311 ~~~~p~-~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~ 365 (388)
.+..++ +.+++.+++.++..++|..++|.+.|.+.|..| ...+...+.+.+++.+
T Consensus 329 ~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~ 385 (390)
T TIGR02718 329 MRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAIL 385 (390)
T ss_pred HHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHH
Confidence 555555 789999999999999999999999999999999 5666666655555443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-23 Score=173.36 Aligned_cols=310 Identities=14% Similarity=0.074 Sum_probs=216.7
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCch-hhhHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTK-LRGSLATWATTARA 79 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~-~r~~~~~~~~~~~~ 79 (388)
.||+|+|-.+++|++++..+++++++.++++.+++.|.+||+|.+...+...++++| .+|++ +|++++|+...+.+
T Consensus 130 ~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l~vAR~LQgvgsA~~~tsglamlAd---~f~~d~er~~vmGialgfis 206 (464)
T KOG3764|consen 130 IDRIGYKIPMVAGLFVMFLSTILFAFGNSYPMLFVARSLQGVGSAFADTSGLAMLAD---VFPEDNERGSVMGIALGFIS 206 (464)
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHhhhhHHHHHhhhHHHHHH---HcccchhhhHHHHHHHHHHh
Confidence 489999999999999999999999999999999999999999999999999999999 78765 57999999999999
Q ss_pred HHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcccc
Q psy13784 80 FGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGD 155 (388)
Q Consensus 80 ~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (388)
+|.++||.+|+.+ |.+.+|++.+++.++-..+.++.++.+..
T Consensus 207 lG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~vi~p~~~---------------------------------- 252 (464)
T KOG3764|consen 207 LGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLVIEPTEM---------------------------------- 252 (464)
T ss_pred ccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHheeCcccc----------------------------------
Confidence 9999999999998 99999999999999998888885554321
Q ss_pred ccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HHHcCCCCCcHHHHHHHHHHHHHHHH
Q psy13784 156 AESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDF-VRSSGFHLLNPYFITVIGGLIIFASV 234 (388)
Q Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~s~~~~~~~~~~~~~~~~~~~ 234 (388)
+++..++..++++++++|..+........... +....---.+.+ .+++..+.-+.+..+...++...+++
T Consensus 253 ----~~~~~~~~~~~~~Ll~dP~I~~~agai~~~n~-----~lafLePtlslwm~e~m~~p~w~~G~~fLp~~~~y~ig~ 323 (464)
T KOG3764|consen 253 ----DPDSTEQGTPMWSLLMDPYILLIAGAITFSNS-----SLAFLEPTLSLWMLETMFTPGWEVGLAFLPASLSYAIGT 323 (464)
T ss_pred ----CccccccCccHHHHHhCchHhhhhcchhhccc-----hHHHhCcccHHHHHHhccCCCcceeeeecccccchhccC
Confidence 00012334567778877754422221111111 112222222333 34445434488889999999999999
Q ss_pred HhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCC
Q psy13784 235 ISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIF 314 (388)
Q Consensus 235 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (388)
.+.|.+.||+++.+.+.....+..++........ ... ....|......++.+........|.. .+..|..
T Consensus 324 ~lfg~la~k~~~~~wl~~~~gl~~~G~~~~~iP~-~~~--------~~~L~vp~~~l~~~i~~~dasl~P~l-~~lvd~r 393 (464)
T KOG3764|consen 324 NLFGKLADKYPHLRWLLSLGGLATVGVSSGPIPF-ATS--------IAQLWVPNFGLGFGIGLADASLIPTL-GYLVDPR 393 (464)
T ss_pred chHHHHHHhcCchhHHHHHHHHHHHHHHhchhHh-hhh--------HHHHhhhhHHHHHHHHHHHHHHhhhh-HHhcchh
Confidence 9999999999954444333333333322221110 000 11223333333444444444444444 3444433
Q ss_pred chh---hHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHH
Q psy13784 315 PME---VKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAH 366 (388)
Q Consensus 315 p~~---~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~ 366 (388)
..+ ..|...++......++.++||.+.|.+.+..| .+...+.+...++-+-+
T Consensus 394 h~s~~~vYGsVyaIad~a~sla~a~GP~~gg~iv~~iGF~wl~~iig~~n~iyapv 449 (464)
T KOG3764|consen 394 HVSGFNVYGSVYAIADAAFSLAYAIGPTFGGSLVEAIGFEWLMTIIGILNLIYAPV 449 (464)
T ss_pred hccccceeeeHHHHHHHHHHHhhhccccccchheeehhHHHHHHHHHHHHHHHHHH
Confidence 333 67889999999999999999999999999999 66666667666665543
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-20 Score=173.20 Aligned_cols=349 Identities=13% Similarity=0.044 Sum_probs=200.7
Q ss_pred CCC-CCchhHHHHHHHHHHHHHHHHHhhcchhH-HHHHHHHHhhhccccccchhhhhcccccccCch--hhhHHHHHHHH
Q psy13784 1 MDK-LGRKPAIILIGIVGIIGWLLITYSLTITN-LFIGRFLTGVSEGLSASPATIYIAESIMVQNTK--LRGSLATWATT 76 (388)
Q Consensus 1 sDr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~--~r~~~~~~~~~ 76 (388)
+|| +||||+++.+.++++++.+.++++++... +.++|+++|+|.|...+...+++.| .+|++ +|+++.+++..
T Consensus 74 aDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~---~~p~~~~~~~~~~~~~~~ 150 (489)
T PRK10207 74 GDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSK---CYPPKDPRLDGAFTLFYM 150 (489)
T ss_pred hhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHH---hcCCCchhhhcchhHHHH
Confidence 699 99999999999999999999999877554 5589999999999999999999999 99877 45788999999
Q ss_pred HHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHh--hcC-ChhhHHHHH---------HHhc
Q psy13784 77 ARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLN--SKG-RRGDAEWAA---------KRLR 140 (388)
Q Consensus 77 ~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~--~~~-~~~~~~~~~---------~~~~ 140 (388)
+.++|..++|.+++++ |||+.|++.++.. +..++.+.+.++..+... .++ +.|.....+ -...
T Consensus 151 ~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~l~~~~~~~~~~~~~ 229 (489)
T PRK10207 151 SINIGSLISLSLAPVIADKFGYSVTYNLCGAGL-IIALLVYFACRGMVKDIGSEPDHKPMSFSKLLLVLLGSVVMIFVCA 229 (489)
T ss_pred HHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHH-HHHHHHHHHcchhhcccCCCCCccchhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999888 9999999865533 333333332443211000 000 011000000 0000
Q ss_pred CCCCCCCCCCCccccccc-------cccccccccchhhhhccCccchHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHH
Q psy13784 141 LGPPSNQTEPTSRGDAES-------GAQGEQMSTTNIFKEFMKPEAYKPLIIISLF--FLFQQFSAVNVILAYMTDFVRS 211 (388)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 211 (388)
...+.... ......... ..++.+. .+.+|++ .+..+.+ .....+..+....+..+.+.++
T Consensus 230 ~~~~~~~~-~~~~~~~~~~i~~~~f~~~~~~~-----~~~~r~r-----~~~~~~l~~~~~~f~~~~~q~~~~l~l~~~~ 298 (489)
T PRK10207 230 WLMHNVEV-ANLVLIVLSIVVTIIFFREAFKL-----DKTGRNK-----MFVAFVLMLEAVVFYILYAQMPTSLNFFAIN 298 (489)
T ss_pred HHHhhhhH-HHHHHHHHHHHHHHHHHHHHhcC-----CHHHHHH-----HHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 00000000 000000000 0000000 0222222 2222111 1222222233333444555542
Q ss_pred -cCCC----CCcHHHHHHHHHHHHHHHHHhhheeecccCCchH-------HHHhhHHHHHHHHHHHHHh--hcccCcccc
Q psy13784 212 -SGFH----LLNPYFITVIGGLIIFASVISISFILPHTGVKPL-------SAASGMGIALSMLVIGTYL--LFEKAPIVN 277 (388)
Q Consensus 212 -~g~s----~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-------~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 277 (388)
.+.+ ...+........+..++.+++.+++.||+++|+. +..+.++.+++.+.+.... ....+
T Consensus 299 ~~~~~~~G~~i~~~~~~~~n~~~iii~~pl~~~l~~rl~~r~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~~~---- 374 (489)
T PRK10207 299 NVHHEILGFSINPVSFQALNPFWVVVASPILAGIYTHLGSKGKDLSMPMKFTLGMFLCSLGFLTAAAAGMWFADAQ---- 374 (489)
T ss_pred hccccccceEECHHHHHhHhHHHHHHHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhcCCC----
Confidence 2211 1234455555566677778888899999998863 5667677666655442211 11110
Q ss_pred ccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHh---------hc
Q psy13784 278 FEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHL---------AL 348 (388)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~---------~~ 348 (388)
...+.++.+....+...+. ....|.....+.+..|++.++.++|+.+....+|+.++..+...... ..
T Consensus 375 --~~~s~~~~i~~~~l~g~Ge-~~~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~ 451 (489)
T PRK10207 375 --GLTSPWFIVLVYLFQSLGE-LFISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETL 451 (489)
T ss_pred --CccCHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhh
Confidence 0112344444444444444 34457777899999999999999999999999999999887765421 01
Q ss_pred c--cchhhHHHHHHHHHHHHhheec
Q psy13784 349 G--NGIFFFYGLVAAIGTAHVLAYL 371 (388)
Q Consensus 349 g--~~~~~~~~~~~~~~~~~~~~~~ 371 (388)
+ ...|...++..+++.++.+...
T Consensus 452 ~~~~~~f~~~~~~~~~~~v~~~~~~ 476 (489)
T PRK10207 452 PVYTNVFGKIGLVTLGVAVVMALMV 476 (489)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2445555555555555444433
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-20 Score=158.57 Aligned_cols=301 Identities=14% Similarity=0.107 Sum_probs=220.0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHH---hhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHH
Q psy13784 2 DKLGRKPAIILIGIVGIIGWLLIT---YSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTAR 78 (388)
Q Consensus 2 Dr~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~ 78 (388)
+|+|+|+.+++|+.++++++.+.. -..++..++++-++.|.|.+...+.+..+++. ..++++..+.+.+.+...
T Consensus 73 kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~LetaaNp~v~~---lg~~~~a~~rlnl~q~fn 149 (422)
T COG0738 73 KKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAANPYVTL---LGKPESAAFRLNLAQAFN 149 (422)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhccchHHHH---hCCchhHHHHHHHHHHhh
Confidence 799999999999999999999884 56899999999999999999999999999999 899988999999999999
Q ss_pred HHHHHHHHHHHhHH-----------------------hHHHHHHHhHHHHHHHHHHHHh-ccCCCchHHhhcCChhhHHH
Q psy13784 79 AFGLLQVYFMGSLL-----------------------RYRKVAAMAAIFSALGTILITF-IIPESPAWLNSKGRRGDAEW 134 (388)
Q Consensus 79 ~~G~~~~~~~~~~~-----------------------~w~~~f~~~~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~ 134 (388)
++|..++|+++..+ .||.+|...+...++..+.... -.||.++
T Consensus 150 ~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~------------- 216 (422)
T COG0738 150 GLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV------------- 216 (422)
T ss_pred hhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc-------------
Confidence 99999999998876 4777888777766665555443 1222110
Q ss_pred HHHHhcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cC
Q psy13784 135 AAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SG 213 (388)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g 213 (388)
..+++.+.+.....+.+++|+.+.-.+..+ + +.........|.+.++.+ .|
T Consensus 217 -----------------------~~~~~~~~~~~~~~~l~~~~~~~~gvl~~F-l----YVG~Eva~gsfl~~y~~~~~g 268 (422)
T COG0738 217 -----------------------AAPSLGASGSAGLSSLFQNKHLRLGVLAIF-L----YVGAEVAIGSFLVSYLEELLG 268 (422)
T ss_pred -----------------------ccccccccccchHHHHHhChHHHHHHHHHH-H----HHhHHHHHHHHHHHHHHhcCC
Confidence 000000111114567777776554333322 2 223346677788888877 68
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHH
Q psy13784 214 FHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVL 293 (388)
Q Consensus 214 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (388)
++..++....+....+.++|++++.++..|+...|.+....++..+.++...+. +....+... .
T Consensus 269 ~~~~~aa~~~s~~~~~~~vGRFig~~lm~~~~~~k~Laf~a~~~ill~~~~~l~---------------~g~v~~~~l-~ 332 (422)
T COG0738 269 LNEQQAAYYLSFFWVGFMVGRFIGSALMSRIKPEKYLAFYALIAILLLLAVALI---------------GGVVALYAL-F 332 (422)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHh---------------cChHHHHHH-H
Confidence 888899999999999999999999999999999998877776665555555441 223333333 3
Q ss_pred HHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHH
Q psy13784 294 NLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGT 364 (388)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~ 364 (388)
..+.++..+.|..++...+..|++ ....|..-...-+|+++.|.+.|++.|..| ...+......|.+..
T Consensus 333 ~ig~F~simfPTIfslal~~l~~~--ts~~s~~l~maivGGAiiP~l~G~i~d~~g~~~~~~~~pllc~lyV 402 (422)
T COG0738 333 LIGLFNSIMFPTIFSLALKNLGEH--TSVGSGLLVMAIVGGAIIPPLQGVIADMFGIQLTFLIVPLLCYLYV 402 (422)
T ss_pred HHHHHhHHHHHHHHHHHHhccCcc--ccccceeeeeheecchHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 444455556698889999999933 334444555667899999999999999999 555554555554444
|
|
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-20 Score=168.62 Aligned_cols=357 Identities=11% Similarity=0.034 Sum_probs=207.7
Q ss_pred CCC-CCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchh---hhHHHHHHHH
Q psy13784 1 MDK-LGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKL---RGSLATWATT 76 (388)
Q Consensus 1 sDr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~---r~~~~~~~~~ 76 (388)
+|| +|||+++.++.++.+++.++.+++++++.+.+.|++.|+|.|...+...++++| ++|+++ |+++.++...
T Consensus 72 aDr~~G~~~~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~---~~~~~~~~~r~~~~~~~~~ 148 (475)
T TIGR00924 72 GDRVWGTKKTMVLGGIVLMLGHFMLAMSIYPDLIFYGLGTIAVGSGLFKANPSSMVGK---LYERGDMPRRDGGFTLFYM 148 (475)
T ss_pred HHhhcchHHHHHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHhccccccCCHHHHHHH---hcCCCCcccccceehhHHH
Confidence 599 899999999999999999999999999999999999999999999999999999 888754 8889999999
Q ss_pred HHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccC----CCchHHhhcCChhhHHHHHHHh---------
Q psy13784 77 ARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIP----ESPAWLNSKGRRGDAEWAAKRL--------- 139 (388)
Q Consensus 77 ~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~p----esp~~~~~~~~~~~~~~~~~~~--------- 139 (388)
+.++|.+++|.+++.+ +||+.|.+.++..++..+...+ .+ |.|+.. ++.+.++.+......
T Consensus 149 ~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 226 (475)
T TIGR00924 149 SINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTFFA-GRHMLRDIGSVP-DPLSGQGKTYGKLLLALLAALALV 226 (475)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHH-cccccccCCCCC-CCcchhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999887 8999999988655554333333 33 222100 000000000000000
Q ss_pred -cC--CCCCCCCCCCcccccccc----ccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-
Q psy13784 140 -RL--GPPSNQTEPTSRGDAESG----AQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS- 211 (388)
Q Consensus 140 -~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 211 (388)
.. ...+....+ ........ ...+...++...+.-++ +...++.++......+..+.......+.+.++
T Consensus 227 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~l~~~~~~~~~~~~Q~~s~l~l~~~~~ 302 (475)
T TIGR00924 227 FFCAWLMHHVVIAN-ILLMTVTLAVIIFFFRLAFKPRLDAVARN---KMYAYIVLFLEAVVFWVLYAQMPTSLNFFADNN 302 (475)
T ss_pred HHHHHHHhccHHHH-HHHHHHHHHHHHHHHHHHHhccCCHHHHh---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHh
Confidence 00 000000000 00000000 00000000000000000 11111222222222222233334444444433
Q ss_pred cCCC----CCcHHHHHHHHHHHHHHHHHhhhe----eecc-cCCchHH--HHhhHHHHHHHHHHHHHhhcccCccccccc
Q psy13784 212 SGFH----LLNPYFITVIGGLIIFASVISISF----ILPH-TGVKPLS--AASGMGIALSMLVIGTYLLFEKAPIVNFEW 280 (388)
Q Consensus 212 ~g~s----~~~~~~~~~~~~~~~~~~~~~~g~----l~d~-~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (388)
.+.+ ....+......++..++..++..+ +.|| .+.+... ..+.++.+++...+.+.....+. ..
T Consensus 303 ~~~~~~~~~ip~~~~~~~n~~~iil~~p~~~~~~~~l~~~~~~~~~~~k~~~G~~l~~~~~~~~~~~~~~~~~-----~~ 377 (475)
T TIGR00924 303 MHHEMLGMSVPVIWFQSLNPFWVVVGSPVLAMIWTRLGRKGKDPTTPLKFTLGMLFCGASFLTFAASIWFADA-----GG 377 (475)
T ss_pred ccccccceEECHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CC
Confidence 2222 122667777777777777766443 3443 2223333 56677777776666542211110 01
Q ss_pred cccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHH
Q psy13784 281 GFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLV 359 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~ 359 (388)
..+.++.+....+...+. ....|..+.+..+..|++.||+.+|+......+|..+++.+.....+..+ ...+...+++
T Consensus 378 ~~s~~~~i~~~~~~~~ge-~~~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~ 456 (475)
T TIGR00924 378 LTSPWFMVLIYLFQTLGE-LMISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLV 456 (475)
T ss_pred ccCHHHHHHHHHHHHHHH-HHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHH
Confidence 123344444444444444 44568888999999999999999999999999999999998887766666 5556666666
Q ss_pred HHHHHHHhheecc
Q psy13784 360 AAIGTAHVLAYLP 372 (388)
Q Consensus 360 ~~~~~~~~~~~~~ 372 (388)
+++..++.++..|
T Consensus 457 ~~~~~~~~~~~~~ 469 (475)
T TIGR00924 457 TLLVGVVMALMVP 469 (475)
T ss_pred HHHHHHHHHHHHH
Confidence 6666555544443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=176.54 Aligned_cols=243 Identities=15% Similarity=0.117 Sum_probs=167.4
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhc---------------------------------------------------c
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSL---------------------------------------------------T 29 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~---------------------------------------------------~ 29 (388)
+||+|||+.+.++.++++++++++++.+ .
T Consensus 92 ~~r~~r~~~i~~g~ll~~lg~ll~alphf~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (633)
T TIGR00805 92 GTKLHRPIVIGIGCAIMGLGSFLLSLPHFLSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLM 171 (633)
T ss_pred hcccCcceEEEecHHHHHHHHHHHhChHHhcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCce
Confidence 5999999999999999999999988763 2
Q ss_pred hhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHHHHHHHHHHHhHH-----h-----------
Q psy13784 30 ITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLL-----R----------- 93 (388)
Q Consensus 30 ~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-----~----------- 93 (388)
+..++++|+++|+|.+..++...+++.| ++|+++|++++++...+..+|..+|+++++.+ +
T Consensus 172 ~~~~~~~r~l~GiG~~~~~~~~~~~i~d---~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l 248 (633)
T TIGR00805 172 WLLFLVSQLLRGIGATPIFPLGISYIDD---FAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVIL 248 (633)
T ss_pred ehhhHHHHHHHhccCCcchhcCchhhhc---cCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCC
Confidence 4567899999999999999999999999 99999999999999999999999999998765 1
Q ss_pred ----------HHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcccccccccccc
Q psy13784 94 ----------YRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGE 163 (388)
Q Consensus 94 ----------w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
||..|++.+++.++..+..++ +|+..+....+.+.+..++ +.... . .. .+..+..+..
T Consensus 249 ~~~dprWiGaWwl~Fli~g~l~~l~~v~l~~-~p~~lp~~~~~~~~~~~~~--~~~~~---~-~~-----~~~~~~~~~~ 316 (633)
T TIGR00805 249 TPTDPRWIGAWWIGFLICGGVALLTSIPFFF-FPKALPKEGKRVNVDVHET--EKLEK---S-ED-----KSRKKNSDIT 316 (633)
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHh-CccccCCcccccchhhhhh--hcccc---c-cc-----ccchhhhhhH
Confidence 778899988888887766555 6654210000000000000 00000 0 00 0000000001
Q ss_pred ccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHH-HHHHHHHhhheee
Q psy13784 164 QMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGL-IIFASVISISFIL 241 (388)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~ 241 (388)
+......++++++|.++...+... ......+.+..|.|.+++ +.|+++.+++.......+ +.+++.+++|+++
T Consensus 317 ~~~~~~~~~Ll~n~~f~~~~l~~~-----~~~~~~~~~~~~lP~yl~~~~g~s~~~ag~l~~~~~i~~~~vG~~l~G~l~ 391 (633)
T TIGR00805 317 KDFPKIIKRLLCNPIYMLVILAQV-----IDSLAFNGYITFLPKYLENQYGISSAEANFLIGVVNLPAAGLGYLIGGFIM 391 (633)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHhhhhhhhHHHHHHhhhhhee
Confidence 112234567777776544333222 233345778889999997 569998888888877766 5689999999999
Q ss_pred cccCC--chHHHHhhHHHHHHHHH
Q psy13784 242 PHTGV--KPLSAASGMGIALSMLV 263 (388)
Q Consensus 242 d~~g~--~~~~~~~~~~~~~~~~~ 263 (388)
||++. |+.+..+.....++.+.
T Consensus 392 ~r~~~~~~~~~~~~~~~~~~~~~~ 415 (633)
T TIGR00805 392 KKFKLNVKKAAYFAICLSTLSYLL 415 (633)
T ss_pred eeecccHHHHHHHHHHHHHHHHHH
Confidence 99984 46666666666655544
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.5e-19 Score=166.02 Aligned_cols=348 Identities=13% Similarity=0.062 Sum_probs=218.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh------cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYS------LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWA 74 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~ 74 (388)
+||+|||+++.++.++++++.++++++ ++++.+++.|++.|+|.+...+.....+.+ |+| ++||++.|+.
T Consensus 85 ~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i~~s~~~l~l~r~l~G~G~~~~~~~~~~~i~~---~Fp-~~RG~a~Gi~ 160 (591)
T PTZ00207 85 YDYLGPRPIFVLSMTVFCLGTLLFALTFQEVIEGSVVRLSVYNGLMTLGCMLFDLGAVVTVLS---VFP-SNRGAVVAIM 160 (591)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hCh-hhhHHHHHHH
Confidence 499999999999999999999999998 689999999999999999998888899999 886 7899999999
Q ss_pred HHHHHHHHHH-HHHHHhHH--hHHHHHHHhHHHHHHHHHHHHhccCCCc--hHHhhcCChhhHHHHHHHhcC--------
Q psy13784 75 TTARAFGLLQ-VYFMGSLL--RYRKVAAMAAIFSALGTILITFIIPESP--AWLNSKGRRGDAEWAAKRLRL-------- 141 (388)
Q Consensus 75 ~~~~~~G~~~-~~~~~~~~--~w~~~f~~~~~~~~~~~~~~~~~~pesp--~~~~~~~~~~~~~~~~~~~~~-------- 141 (388)
..+.++|..+ +++...++ +|+..|++.+++.++..++.+.++++.| ++..++++.+++++..++.++
T Consensus 161 ~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~~~~~~~~~~~~~~~~~~~y~~q~~ 240 (591)
T PTZ00207 161 KTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQEKHLDEEEKAQRLMRKGVYLKQKA 240 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhcccccCCCHHHHHHHhhhhhhhhhcCC
Confidence 9999999976 45555555 9999999999998888777777666554 333222222222222111000
Q ss_pred --------------------------------------------------------------CCCCCCCCCCcccccc--
Q psy13784 142 --------------------------------------------------------------GPPSNQTEPTSRGDAE-- 157 (388)
Q Consensus 142 --------------------------------------------------------------~~~~~~~~~~~~~~~~-- 157 (388)
.+.++++++...++.+
T Consensus 241 p~~~f~~~~~i~~~l~~yl~~~~~~~~~~~~~~~~~~~~~~v~~~lll~~p~l~ip~~~~~~~~~~~~~~~~~~~~~~~~ 320 (591)
T PTZ00207 241 PMWRFVYGFVILIILIVFLPLQGALVAYLKLGSNFKVGFAVTVIVLTVIFPFMAFPLTTFDGKRPHDDSDGKAKEHVEAG 320 (591)
T ss_pred CceehhhHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhhHHHhccCCcCCCcccccccccccc
Confidence 0000000000000000
Q ss_pred ----ccc--------c-ccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-CCCCCc--HHH
Q psy13784 158 ----SGA--------Q-GEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSS-GFHLLN--PYF 221 (388)
Q Consensus 158 ----~~~--------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~s~~~--~~~ 221 (388)
+.+ + ...+...++++.+++..+|. .+..+++....-..+...+.++.+.+ |.+.++ ...
T Consensus 321 ~~~~~~~~~~~~~~~~~~~P~~~~t~~q~l~~~d~Wl-----l~~~~~cg~g~gl~~~~N~~qI~~sl~g~~~~~~~~~~ 395 (591)
T PTZ00207 321 EEVSAAEDKVVETDVDYIAPQFQETFIEGLKTARLWC-----LLWSIFCCVGAHFVIIFNARFIYTALAGEAPDDALNTL 395 (591)
T ss_pred ccccccccccccccccCCCCCCcchHHHHHhchhHHH-----HHHHHHHhhCchheeeecHHHHHHHhcCCCCCccceee
Confidence 000 0 00111125556665555442 33333334444455666777777877 773322 223
Q ss_pred HHHHHHHHHHHHHHhhheeeccc---------CCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHH
Q psy13784 222 ITVIGGLIIFASVISISFILPHT---------GVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALV 292 (388)
Q Consensus 222 ~~~~~~~~~~~~~~~~g~l~d~~---------g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (388)
+.++.++.+.+|++..|.+.... .|.-.+.+..+ +.++.+++.+. .......+...
T Consensus 396 ~vsL~si~~~~GRl~~g~~~~~~~~~~~~~r~prt~~l~~~~~-~~~~~lll~~~--------------~p~~~L~~~~~ 460 (591)
T PTZ00207 396 LTVLNGVGSAVGRLCMSYFEIWSQKRRAEDRVPITIALFIPSV-CIITMLTLFLT--------------LPKAALPLPYF 460 (591)
T ss_pred ehhhhhHHHHhhHHHHHHHHHHHHhhccccccchhHHHHHHHH-HHHHHHHHHHH--------------CCccHhHHHHH
Confidence 77888999999999999877222 22222333333 44555554431 01122333333
Q ss_pred HHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHH-HHHhHHHHhhc----------c----cchhhHHH
Q psy13784 293 LNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFA-VKTWPTLHLAL----------G----NGIFFFYG 357 (388)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~-~~~~g~l~~~~----------g----~~~~~~~~ 357 (388)
+.+.+.+. ..+.....++|+|. ++-|+-+-+.....-+|+.+- ..++|.+.|.. | ..++++.+
T Consensus 461 lvg~~~G~-~~~~~~~i~selFg-k~~g~~yN~~~~a~pigs~~~n~~l~G~~Yd~ea~k~~~~~C~G~~C~~~~~~v~~ 538 (591)
T PTZ00207 461 IAAFANGF-MAATIALVTRTIFA-KDPAKHYNFCFLGSVLSAIFLNRLLYGEWYTQQADKLGQDVCTERVCVVMPLAFLL 538 (591)
T ss_pred HHHHHhhH-hHHHHHHHHHHHhc-cchHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHhhCCCCeeCCceeeHhHHHHHH
Confidence 33444433 34666689999999 778888887777777777766 56778777642 2 46788888
Q ss_pred HHHHHHHHHhheeccCC
Q psy13784 358 LVAAIGTAHVLAYLPET 374 (388)
Q Consensus 358 ~~~~~~~~~~~~~~~~~ 374 (388)
+++.++.+......-++
T Consensus 539 ~~~~~g~~~s~~l~~R~ 555 (591)
T PTZ00207 539 GLSFLAFITSTYVHLQY 555 (591)
T ss_pred HHHHHHHHHHhheeeeh
Confidence 88888887665554444
|
|
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-19 Score=155.22 Aligned_cols=269 Identities=13% Similarity=0.081 Sum_probs=186.8
Q ss_pred HhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHHHHHHHHHHHhHH------------
Q psy13784 25 TYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLL------------ 92 (388)
Q Consensus 25 ~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~------------ 92 (388)
+..++|+.+++.-++.|.|.+...+..+.++++ ..++|++++.+++.+...++|..++|.+++.+
T Consensus 5 ~~~~~~~~~l~~~f~~g~G~~~lq~~~n~~v~~---~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~ 81 (310)
T TIGR01272 5 ASQRYYVLFLGALFVLASGLTILQVAANPYVSI---LGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQV 81 (310)
T ss_pred HHhhHHHHHHHHHHHHHhhHHHHHhhHHHHHHH---HCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhh
Confidence 355789999999999999999999999999999 88999999999999999999999999998853
Q ss_pred --------hHHHHHHHhHHHHHHHHHHHHh-ccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcccccccccccc
Q psy13784 93 --------RYRKVAAMAAIFSALGTILITF-IIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGE 163 (388)
Q Consensus 93 --------~w~~~f~~~~~~~~~~~~~~~~-~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (388)
+||++|++.+.+.++..+...+ -+||.++ +.++ +..+++
T Consensus 82 ~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~~~~p~~~~------~~~~--------------------------~~~~~~ 129 (310)
T TIGR01272 82 ATANAEAAKVHTPYLLLAGALAVLAIIFAFLPLPELQE------ADVA--------------------------RVSSGD 129 (310)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCc------cccc--------------------------cccccc
Confidence 4899999777665555544433 2344210 0000 000000
Q ss_pred ccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH---cCCCCCcHHHHHHHHHHHHHHHHHhhhee
Q psy13784 164 QMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS---SGFHLLNPYFITVIGGLIIFASVISISFI 240 (388)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l 240 (388)
.. +..+.+++|. .....+..++..........|.+.|+++ .|+++.+.+........+.++|+++.+++
T Consensus 130 ~~---~~~~~~~~~~-----~~l~~~~~f~yvg~e~~~~~w~~~yl~~~~~~g~s~~~a~~~~s~~~~~~~iGr~~~~~l 201 (310)
T TIGR01272 130 TT---QKTSAFQFTH-----LVLGALGIFVYVGAEVSAGSFLVNFLSDPHALGLPEDQAAHFTAYTWGGAMVGRFIGSAV 201 (310)
T ss_pred cc---chhhHHhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0112233222 2223333343444456778888999864 38888999999999999999999999999
Q ss_pred ecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHH
Q psy13784 241 LPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKG 320 (388)
Q Consensus 241 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~ 320 (388)
.||+++|+.+..+..+..++.++... . +.........+. +.+.....|...+...+..|++ .+
T Consensus 202 ~~r~g~~~~l~~~~~l~~~~~~l~~~---~------------~~~~~~~~~~l~-g~~~s~i~P~~~s~a~~~~~~~-~~ 264 (310)
T TIGR01272 202 MPMISQGRYLAFNAFLAVLLSIGAAL---T------------HGYVAMWFVLAL-GLFNSIMFPTIFSLALNALGRH-TS 264 (310)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHH---c------------CCHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhhhh-hh
Confidence 99999999887777666665544432 0 112222222333 3444445577778888888765 45
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhh
Q psy13784 321 VAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFF 354 (388)
Q Consensus 321 ~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~ 354 (388)
++.++. ..+.+|+.+.|.+.|.+.|..| ..+++
T Consensus 265 ~asai~-~~~~~Gg~i~P~l~G~lad~~g~~~a~~ 298 (310)
T TIGR01272 265 QGSGIL-CLAIVGGAIVPLLQGSLADCLGIQLAFA 298 (310)
T ss_pred hhHHHH-HHHHhcchHHHHHHHHHHHhccchHHHH
Confidence 666765 5677999999999999999988 66655
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-19 Score=158.02 Aligned_cols=345 Identities=14% Similarity=0.132 Sum_probs=215.4
Q ss_pred CC----CCCchhHHHHH-HHHHHHHHHHHHhhcchh-----------------HHHHHHHHHhhhccccccchhhhhccc
Q psy13784 1 MD----KLGRKPAIILI-GIVGIIGWLLITYSLTIT-----------------NLFIGRFLTGVSEGLSASPATIYIAES 58 (388)
Q Consensus 1 sD----r~Grr~~~~~~-~~~~~~~~~~~~~~~~~~-----------------~~~~~r~l~G~g~g~~~~~~~~~i~~~ 58 (388)
|| |+||||.++++ .....++.++.+++++.. .++++-.+..++.....+...+++.|
T Consensus 63 SDr~~sr~GRRrp~il~g~~~~~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~~p~rALiaD- 141 (477)
T TIGR01301 63 SDRCTSRFGRRRPFIAAGAALVAFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQGPCRAFLAD- 141 (477)
T ss_pred hcCCCCCCCChHHHHHHHHHHHHHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 68 59999998774 666667777777876653 22333334445777777888999999
Q ss_pred ccccCchhh--hHHHHHHHHHHHHHHHHHHHHHhHH-------------------hHHHHHHHhHHHHHHHHHHHHhccC
Q psy13784 59 IMVQNTKLR--GSLATWATTARAFGLLQVYFMGSLL-------------------RYRKVAAMAAIFSALGTILITFIIP 117 (388)
Q Consensus 59 ~~~~~~~~r--~~~~~~~~~~~~~G~~~~~~~~~~~-------------------~w~~~f~~~~~~~~~~~~~~~~~~p 117 (388)
..|+++| +.+.++.+...++|.++++.+++.. +.|..|++.++..++..++..+.++
T Consensus 142 --l~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~ 219 (477)
T TIGR01301 142 --LTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVK 219 (477)
T ss_pred --ccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeee
Confidence 8998865 6799999999999999999988753 4578899999988888888888899
Q ss_pred CCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccccccccccccccchhhhhccCcc-chHHHHHHHHHHHHHHhh
Q psy13784 118 ESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPE-AYKPLIIISLFFLFQQFS 196 (388)
Q Consensus 118 esp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 196 (388)
|.|... .++.++ + +.++.+ +......+.+++++-+ ..+.+...+..+++ .+.
T Consensus 220 E~~~~~--~~~~~~--~--------------------~~~~~~--~~~~~~~~~~i~~~~~~mP~~m~~l~~vqff-sW~ 272 (477)
T TIGR01301 220 ENPLIG--SDDFIN--S--------------------EAAPPS--KHGEEAFFGELFGAFKYLPRPVWILLLVTCL-NWI 272 (477)
T ss_pred ccCCCc--cccchh--h--------------------hccccc--ccchhhhHHHHHHHHHHCCHHHHHHHHHHHH-HHH
Confidence 976311 000000 0 000000 0001111222222211 12222233333333 444
Q ss_pred hHHHHHHHHHHHHHH-c-CCCCC-c---------HHHHHHHHHHHHHHHHHhhheeecccCC-chHHHHhhHHHHHHHHH
Q psy13784 197 AVNVILAYMTDFVRS-S-GFHLL-N---------PYFITVIGGLIIFASVISISFILPHTGV-KPLSAASGMGIALSMLV 263 (388)
Q Consensus 197 ~~~~~~~~~~~~~~~-~-g~s~~-~---------~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~ 263 (388)
+++.+..|.+.+..+ . +-++. . ..+.....++...+.+++..++.+|+|+ |+....+.++.++++..
T Consensus 273 a~f~~~~y~T~~vg~~v~~~~~~~~~~y~~gvr~G~~~l~~~s~~~~i~s~~l~~l~~~~g~~k~~~~~s~~~~~~~l~~ 352 (477)
T TIGR01301 273 AWFPFILFDTDWMGREVYGGSVNQGAKYDDGVRAGAFGLMLNSVVLGITSIGMEKLCRGWGAGKRLWGIVNIILAICLAA 352 (477)
T ss_pred HHHHHHHhccHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHH
Confidence 566666666666642 2 22211 1 2234445556666777778888999985 66668888888877777
Q ss_pred HHHHhhcccC-----ccccccccc-c-chHHHHHHHHHHHHHHhccccchhhhhccCCch--hhHHHHHHHHHHHHHHHH
Q psy13784 264 IGTYLLFEKA-----PIVNFEWGF-F-NLIPLAALVLNLVASSVGFLPIPYLMLGEIFPM--EVKGVAAGLATCLAYIFG 334 (388)
Q Consensus 264 ~~~~~~~~~~-----~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~r~~~~~~~~~~~~~g~ 334 (388)
..+.....++ +..+..... . .+..+......+..... ...++++++++..|+ +..|..+|+.|.+..+.+
T Consensus 353 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Gi~~A~-~~siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQ 431 (477)
T TIGR01301 353 TVLVTYVAKNSRYYDGDGESLPPPTGIKASALIVFAILGIPLAI-TYSIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQ 431 (477)
T ss_pred HHHHHhhhhccccccccccccCcchhhHHHHHHHHHHhhHHHHH-HHHHhHHHHHHHccccCCCCcchhhHHHHHHHHHH
Confidence 7543321110 000000000 1 13344444444444443 458889999999995 455999999999999999
Q ss_pred HHHHHHhHHHHhhcc---cchhhHHHHHHHHHHHHhheeccCCCC
Q psy13784 335 FFAVKTWPTLHLALG---NGIFFFYGLVAAIGTAHVLAYLPETKG 376 (388)
Q Consensus 335 ~~~~~~~g~l~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (388)
.+.....|.+.+..| ...+.+.++..++++++..+.+|++++
T Consensus 432 ii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~~ 476 (477)
T TIGR01301 432 IIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPRV 476 (477)
T ss_pred HHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 999998888777776 455666667777788888888887764
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-18 Score=157.13 Aligned_cols=334 Identities=13% Similarity=0.115 Sum_probs=226.5
Q ss_pred CCCCCchhHH-HHHHHHHHHHHHHHHhh--cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhh----------
Q psy13784 1 MDKLGRKPAI-ILIGIVGIIGWLLITYS--LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLR---------- 67 (388)
Q Consensus 1 sDr~Grr~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r---------- 67 (388)
+|+-|+||.+ .....+..+++....+. ++++...+.-++.-++.+.......+++.| ..+++++
T Consensus 94 aD~~~~Rk~~l~~~~~~~~~~~~~l~~v~~~~~~~~~~l~iia~v~~~~~~vfyna~LP~---la~~~~~~~~~~~~~~~ 170 (477)
T PF11700_consen 94 ADYGGRRKRFLLIFTLLGVLATALLWFVSPGQWWLALVLFIIANVGYEASNVFYNAYLPD---LARPEPRVRAAREPSAN 170 (477)
T ss_pred HcccccchHHHHHHHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhHh---hcCCChhhhhhhhhhcc
Confidence 5888877765 44555555666666664 445555566667777888888888999999 8888888
Q ss_pred ----------------hHHHHHHHHHHHHHHHHHHHHHhHH------------hHHHHHHHhHHHHHHHHHHHHhccCCC
Q psy13784 68 ----------------GSLATWATTARAFGLLQVYFMGSLL------------RYRKVAAMAAIFSALGTILITFIIPES 119 (388)
Q Consensus 68 ----------------~~~~~~~~~~~~~G~~~~~~~~~~~------------~w~~~f~~~~~~~~~~~~~~~~~~pes 119 (388)
++.++.-.....+|.++.-.+...+ +-|..+.+.++.-++..+..++++||.
T Consensus 171 ~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~ 250 (477)
T PF11700_consen 171 GNISDSEYEAVDSLTRGRVSGLGWALGYIGGLVALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDR 250 (477)
T ss_pred CCCChhhhhhHHHhhhchhHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999998887776655 258889999999888888888889998
Q ss_pred chHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHH
Q psy13784 120 PAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVN 199 (388)
Q Consensus 120 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (388)
|+....++..+.... ..++.++.+|+-+..+. ...+++..+....+..
T Consensus 251 ~~~~~~~~~~~~~~~-------------------------------g~~~l~~t~k~~~~~~~-~~~fLia~~l~~dg~~ 298 (477)
T PF11700_consen 251 PGPRPLPSGSSYLRF-------------------------------GFKRLWRTFKEIRKLRQ-LFLFLIAYFLYSDGVN 298 (477)
T ss_pred CCCCCCCcchhHHHH-------------------------------HHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHH
Confidence 742000000000000 11112222222221222 2233444444556677
Q ss_pred HHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCc--hHHHHhhHHHHHHHHHHHHHhhcccCccc
Q psy13784 200 VILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVK--PLSAASGMGIALSMLVIGTYLLFEKAPIV 276 (388)
Q Consensus 200 ~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (388)
.+......+.+ ++|++..+.........+.+++|+++.+++.||+|.| +.+..+.....+..+.-.+-......
T Consensus 299 ti~~~~~i~a~~~lg~s~~~l~~~~l~~~i~a~~Ga~~~g~l~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~--- 375 (477)
T PF11700_consen 299 TIISFAGIYATEVLGMSTTQLIVFGLVVQIVAIIGALLFGWLQDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFF--- 375 (477)
T ss_pred HHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhccc---
Confidence 88888888876 6799999999999999999999999999999999998 66666554442222221110000000
Q ss_pred cccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc--cchhh
Q psy13784 277 NFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG--NGIFF 354 (388)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~ 354 (388)
...+.+... ...+..+.+..+..+...++.+|+.|+++.+..+|++...+...+.+||.+.|.+.+..| ...+.
T Consensus 376 ---g~~~~~~f~-~~a~~~G~~~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~ 451 (477)
T PF11700_consen 376 ---GLKSPWEFW-VLAVLIGLFMGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFL 451 (477)
T ss_pred ---CcccHHHHH-HHHHHHHHHhhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHH
Confidence 011233333 334445555556678888999999999999999999999999999999999999999998 56666
Q ss_pred HHHHHHHHHHHHhheeccCCCCC
Q psy13784 355 FYGLVAAIGTAHVLAYLPETKGK 377 (388)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~~ 377 (388)
...++.+++.+++ ...+.+|++
T Consensus 452 ~l~~lf~~gl~ll-~~v~~~~g~ 473 (477)
T PF11700_consen 452 FLLVLFLIGLILL-FFVDVEKGR 473 (477)
T ss_pred HHHHHHHHHHHHH-hhccchhhh
Confidence 6666666666644 455554443
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.5e-19 Score=146.87 Aligned_cols=302 Identities=14% Similarity=0.160 Sum_probs=219.1
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHHH
Q psy13784 2 DKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAFG 81 (388)
Q Consensus 2 Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G 81 (388)
.|+|.++.+..++++.+++.++-... +.+.++.+-.+.|.|.+...+..+.++-+ .+| |+-+..++++....++|
T Consensus 72 r~~g~er~l~~~Llli~~G~~iR~~~-~~~~L~~gt~l~G~gIav~nVLLPslIK~---~Fp-k~~~~mtglYs~sl~~~ 146 (395)
T COG2807 72 RRFGEERSLFLALLLIAAGILIRSLG-GLPLLFLGTLLAGAGIAVINVLLPSLIKR---DFP-KRVGLMTGLYSTSLGAG 146 (395)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHhhHHHHHHhhhHHHHh---hcc-cchhhHHhHHHHHHHHH
Confidence 47899999999999999999999888 88889999999999999999999999999 666 56799999999999998
Q ss_pred HHHHHHHHhHH-----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 82 LLQVYFMGSLL-----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 82 ~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
..+++.++-.+ +||.....-+.++++.++.++. ...|. +.
T Consensus 147 aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~WlP---q~~r~-----~~--------------------------- 191 (395)
T COG2807 147 AALAAALAVPLAQHSGGWRGALGFWALLALLALLIWLP---QALRE-----QA--------------------------- 191 (395)
T ss_pred HHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHhh---hcccc-----cc---------------------------
Confidence 88887776666 7999999999999887666544 21110 00
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHh
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVIS 236 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~ 236 (388)
.+.+.+..+..+.+|+|.- +...+++..+...++....|+|.++.+.|+|+.+++...+...+..++.++.
T Consensus 192 ----~~~~~~~~~~~~vw~~~~a-----W~vtLfmGlqS~~~Y~~~~WLP~ili~~G~sa~~aG~llsl~~l~~~~~~ll 262 (395)
T COG2807 192 ----ASIATKLVSVRKVWRSPLA-----WQVTLFMGLQSLLYYIVIGWLPAILIDRGLSAAEAGSLLSLMQLAQLPTALL 262 (395)
T ss_pred ----cccccccccccccccCchh-----HHHHHHHHhhHHHHHHHHHHHHHHHHHcCCCHHHhhhHHHHHHHHHHHHHHH
Confidence 0000111222345555543 3344566667777899999999999999999999999999999999999999
Q ss_pred hheeecccC-CchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCC-
Q psy13784 237 ISFILPHTG-VKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIF- 314 (388)
Q Consensus 237 ~g~l~d~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 314 (388)
...+.+|.. +|+.......++.++.+.+.+. +....+.. ..+.+.+. .+..|.......+..
T Consensus 263 ~P~la~R~~n~r~~~~~~~~~~l~G~~G~~~~------------P~~~~~lw---~~llG~G~-G~~F~laL~li~~rs~ 326 (395)
T COG2807 263 IPLLARRSKNQRPLVVLALLLMLVGLVGLLLA------------PGQLPILW---ALLLGLGQ-GGAFPLALTLILLRSS 326 (395)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHHHHh------------hhhHHHHH---HHHHhCcc-chHHHHHHHHHHhhcC
Confidence 999999754 5666666667777777776541 11122222 12222222 223355555555544
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-c-chhhHHHHHHHHHHHHhh
Q psy13784 315 PMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-N-GIFFFYGLVAAIGTAHVL 368 (388)
Q Consensus 315 p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~-~~~~~~~~~~~~~~~~~~ 368 (388)
.++..+.-.|+.+..+++-..+||.+.|++.|..| + .....++...++..+..+
T Consensus 327 ~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~gsw~~~~~~l~~~~i~m~i~Gl 382 (395)
T COG2807 327 DAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDATGSWSAPLVLLALATLLMLIFGL 382 (395)
T ss_pred ChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Confidence 45667788899999999999999999999999999 4 344444444444444333
|
|
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.6e-18 Score=158.83 Aligned_cols=289 Identities=11% Similarity=-0.010 Sum_probs=175.8
Q ss_pred CCchhH-HHHHHHHHHHHHHHHHhhcc------hhHHHHHHHHHhhhccccccchhhhhccccccc-CchhhhHHHHHHH
Q psy13784 4 LGRKPA-IILIGIVGIIGWLLITYSLT------ITNLFIGRFLTGVSEGLSASPATIYIAESIMVQ-NTKLRGSLATWAT 75 (388)
Q Consensus 4 ~Grr~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~-~~~~r~~~~~~~~ 75 (388)
+||||. ++.+....+++..+....++ +..+++..++.+.+.......-.++..| +. ++++|.+..++..
T Consensus 76 ~Grrrp~il~~~~~~~i~~~l~f~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~---~t~~~~eR~~l~~~r~ 152 (444)
T PRK09669 76 HGQFRPYLLWFAIPFGVVCLLTFYTPDFGATGKIIYACVTYILLSLVYTAINVPYCAMPGA---ITNDPRERHSLQSWRF 152 (444)
T ss_pred CCCcchhHHHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHhhcchHHHhHHH---hcCCHHHHHHHHHHHH
Confidence 888655 55677777777766555543 4556666777777666777777788999 66 5688999888888
Q ss_pred HHHHHHHHHHHHHHhHH-----------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCC
Q psy13784 76 TARAFGLLQVYFMGSLL-----------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPP 144 (388)
Q Consensus 76 ~~~~~G~~~~~~~~~~~-----------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~ 144 (388)
.+..+|..+++.+...+ +|+..+.+.+++.++..+..++..+|.++. +
T Consensus 153 ~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e~~~~-------~-------------- 211 (444)
T PRK09669 153 ALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKERYTP-------E-------------- 211 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEEecCC-------C--------------
Confidence 88888877776543322 688888888888777766666545553210 0
Q ss_pred CCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHH
Q psy13784 145 SNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITV 224 (388)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~ 224 (388)
++++.+..++.++.++++.++......++.... ........+++.+..--++........
T Consensus 212 ---------------~~~~~~~~~~~~~~~~n~~~~~l~~~~~~~~~~-----~~~~~~~~~y~~~~~~~~~~~~~~~~~ 271 (444)
T PRK09669 212 ---------------VDNSSSVWKDLKLLLGNSQWRIMFIFNVVLLTA-----VVTRGGATLYYVNYVLLRPDLATLFLV 271 (444)
T ss_pred ---------------CcCCCCHHHHHHHHhCCchHHHHHHHHHHHHHH-----HHHHhhhhheeeeeecCCHHHHHHHHH
Confidence 000011234456677777655433322222121 122222223333321111223334444
Q ss_pred HHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhcccc
Q psy13784 225 IGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLP 304 (388)
Q Consensus 225 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (388)
...+..+++.++.+++.||+|+|+....+.....+....+.+ .. .++.+.......+...+. ....+
T Consensus 272 ~~~i~~ii~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~--~~----------~~~~~~~~~~~~i~g~~~-~~~~~ 338 (444)
T PRK09669 272 TGMIAGLFGALLSERLLGKFDRVRAFKWTIVAFVILSALIFF--IP----------PSNVWLIFALNILFNFIQ-NLTTP 338 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH--hC----------cchHHHHHHHHHHHHHHH-HHHHH
Confidence 555777788889999999999999887776555443332221 11 112233333333333333 34447
Q ss_pred chhhhhccCCc-------hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 305 IPYLMLGEIFP-------MEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 305 ~~~~~~~~~~p-------~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
..+++.+|..+ ++..|...|..+....+|..+++.+.|.+.+..|
T Consensus 339 ~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~~~G 390 (444)
T PRK09669 339 LQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILAWVD 390 (444)
T ss_pred HHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 77888888875 2335678899999999999999999999998776
|
|
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.84 E-value=2e-18 Score=157.73 Aligned_cols=323 Identities=16% Similarity=0.132 Sum_probs=192.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
||.||||.+++.+.++..+|.++++.++|...++.+..+.|+|.|.... ....++| ..|.|+|....++.......
T Consensus 102 SDlfGRr~~~i~g~~l~vvG~Iv~atA~~~~~~iag~~l~GvgaG~~~~-~~~~isE---l~p~k~R~~~~~~~~~~~i~ 177 (599)
T PF06609_consen 102 SDLFGRRYFFIIGSLLGVVGSIVCATAQNMNTFIAGMVLYGVGAGVQEL-AALAISE---LVPNKWRGLGLAIASIPFII 177 (599)
T ss_pred HHHhcchHHHHHHHHHHHhHHHHhhcCCcHHHHHHHHHHHHHhhHHHHH-HHHHHHH---hcccchhhhHhHHHHHHHHh
Confidence 6999999999999999999999999999999999999999999877764 5566899 89999998888777766656
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhc----------------
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLR---------------- 140 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~---------------- 140 (388)
....++.++..+ +|||.|++..+...+.+++.+++.. +|++...+++....++.++++.
T Consensus 178 ~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~-PP~~~~~~~~~~s~~~~l~~lD~IG~~L~~~Gl~LfLl 256 (599)
T PF06609_consen 178 TTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYF-PPPRAQLHGRKLSKREQLKELDWIGIFLFIAGLALFLL 256 (599)
T ss_pred hhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhC-CCchhhhccccCcHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 555677777666 8999999999987776665544222 2332222222111112222221
Q ss_pred ----CCCC-CCCCCCCccccccc----c-----ccc--cccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHH
Q psy13784 141 ----LGPP-SNQTEPTSRGDAES----G-----AQG--EQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAY 204 (388)
Q Consensus 141 ----~~~~-~~~~~~~~~~~~~~----~-----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (388)
..+. .+..........-- . =|. ..+++--..+++++++... ..+...+. ....++....+
T Consensus 257 gl~wgG~~~~~W~Sa~VIa~lviG~~~Lv~F~~wE~~~~~~~Pl~P~~Lf~~~r~~~---~~lvi~fi-~G~~~~s~~~l 332 (599)
T PF06609_consen 257 GLSWGGYPYYPWKSAHVIAPLVIGFVLLVAFVVWEWFGAPKDPLFPHRLFKDRRGFA---ALLVISFI-SGMNFFSVNIL 332 (599)
T ss_pred HHhccCCCCCCCCCccchhhHHHHHHHHHHHHHhhhhccCCCCcCCHHHhccchHHH---HHHHHHHH-HHHHHHHHHHH
Confidence 0111 11111111100000 0 000 0111222345666543221 11112221 22223444444
Q ss_pred HHHHHH-HcCCCC---CcHHHHHHHHHHHHHHHHHhhheeecccCCchHH-HHhhHHHHHHHHHHHHHhhcccCcccccc
Q psy13784 205 MTDFVR-SSGFHL---LNPYFITVIGGLIIFASVISISFILPHTGVKPLS-AASGMGIALSMLVIGTYLLFEKAPIVNFE 279 (388)
Q Consensus 205 ~~~~~~-~~g~s~---~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (388)
.|.... -++-++ .+.++.....+++...+.++.+.+..+++|-|.. +.+...+.+++..+.. ...
T Consensus 333 ~p~~~~~vf~~d~~~~~~~~~~s~~~~fg~~~g~~i~g~l~~~ir~~Kw~li~~~~~~ta~~Gama~---~~~------- 402 (599)
T PF06609_consen 333 WPQQVVNVFGSDPISITEIGWISSPVGFGSCAGAVILGLLFSKIRHIKWQLIFGSVLMTAFCGAMAA---VRP------- 402 (599)
T ss_pred HHHHHhhhccCCCcccceeehhhhhHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHH---ccC-------
Confidence 444433 334433 2566777888888889999899898888775544 4555555444444432 111
Q ss_pred ccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy13784 280 WGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLH 345 (388)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~ 345 (388)
++....+....+.+.+.+... ......+.-..|++.-+++.|+..++..+|+.+|..++..+.
T Consensus 403 --~n~~~~i~~~~l~g~giG~~~-~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aIy~~I~ 465 (599)
T PF06609_consen 403 --DNKNAAIAFLVLAGFGIGGIL-VPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAIYNAIF 465 (599)
T ss_pred --CCcchHHHHHHHHHHhHHHHH-HHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 111222222233333333222 233466677889999999999999999999999988876655
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-18 Score=158.92 Aligned_cols=322 Identities=13% Similarity=0.034 Sum_probs=181.5
Q ss_pred CCC-CCchhHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHhhhccccccchhhhhcccccccCchh--hhHHHHHHHH
Q psy13784 1 MDK-LGRKPAIILIGIVGIIGWLLITYSL-TITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKL--RGSLATWATT 76 (388)
Q Consensus 1 sDr-~Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~--r~~~~~~~~~ 76 (388)
+|| +|||+++..+.++.+++..++++++ +.+.+.++|+++|+|.|...+...+++.| ++|+++ |..+.+++..
T Consensus 81 aDr~~G~r~~~~~g~~~~~ig~~l~~~~~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~---~f~~~~~~~~~~~~~~~~ 157 (500)
T PRK09584 81 GDKVLGTKRVIMLGAIVLAIGYALVAWSGHDAGIVYMGMATIAVGNGLFKANPSSLLST---CYEKDDPRLDGAFTMYYM 157 (500)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhhhcccCCHHHHHHH---hcCCCchhhhhcchHHHH
Confidence 599 5999999999999999999998874 56677788999999999999998899999 887643 4567888899
Q ss_pred HHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHH---HHhccCCCchHHhhcCChhhHHHHH-----------HH
Q psy13784 77 ARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTIL---ITFIIPESPAWLNSKGRRGDAEWAA-----------KR 138 (388)
Q Consensus 77 ~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~---~~~~~pesp~~~~~~~~~~~~~~~~-----------~~ 138 (388)
+.++|..++|.+++++ |||+.|.+.++..++..+. ....++|.++- .++++.+...... ..
T Consensus 158 ~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (500)
T PRK09584 158 SINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLITVVNFAFCQRWVKQYGSK-PDFEPINYRKLLLTIVGVVALIAIAT 236 (500)
T ss_pred HHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCC-CCccccchhhHHHHHHHHHHHHHHHH
Confidence 9999999999999888 8999999987654443332 22233432110 0000011100000 00
Q ss_pred hcCCCCCCCCCCCccccccccccccccccchhhhhcc-CccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-----c
Q psy13784 139 LRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFM-KPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-----S 212 (388)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~ 212 (388)
....+. + .......... .........+..+ ++..+++.+..+.... ....++......+..+.. .
T Consensus 237 ~~~~~~---~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~i~f~~~~~q~~~~l~~~~~~~~ 307 (500)
T PRK09584 237 WLLHNQ---E---IARMALGVVA-LGIVVIFGKEAFAMKGAARRKMIVAFILML--EAIIFFVLYSQMPTSLNFFAIRNV 307 (500)
T ss_pred HHHhcc---h---HHHHHHHHHH-HHHHHHHHHHHhhcCHHHHHHHHHHHHHHH--HHHHHHHHHHHhccHHHHHHHHhc
Confidence 000000 0 0000000000 0000000000000 0111222222221111 111122223333333221 1
Q ss_pred -----CCCCCcHHHHHHHHHHHHHHHHHhh----heeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccccccccc
Q psy13784 213 -----GFHLLNPYFITVIGGLIIFASVISI----SFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFF 283 (388)
Q Consensus 213 -----g~s~~~~~~~~~~~~~~~~~~~~~~----g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (388)
|+ ............+..++..++. +++.||.+..+.+.++..+.+++.+.+.......+. ....+
T Consensus 308 ~~~~~g~-~i~~~~~~s~n~i~iil~~p~~~~~~~~l~~r~~~~~~~~~G~~l~~l~f~~l~~~~~~~~~-----~~~vs 381 (500)
T PRK09584 308 EHSILGI-AVEPEQYQALNPFWIMIGSPILAAIYNKMGDRLPMPHKFAIGMVLCSGAFLVLPLGAKFAND-----AGIVS 381 (500)
T ss_pred cccccce-EECHHHHHHHhHHHHHHHHHHHHHHHHHhCcCCCcHHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCccC
Confidence 21 1235566666665555665555 566666666677888888888888877553221111 00112
Q ss_pred chHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13784 284 NLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWP 342 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g 342 (388)
.++.+.. .+..+.......|....++.+..|++.||+++|+......+|+.++..+.+
T Consensus 382 ~~~~~~~-~~l~~~ge~~~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~~ 439 (500)
T PRK09584 382 VNWLIAS-YGLQSIGELMISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVAN 439 (500)
T ss_pred HHHHHHH-HHHHHHHHHHHhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333 333444445556888899999999999999999887777777777666554
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.5e-18 Score=157.46 Aligned_cols=298 Identities=12% Similarity=0.044 Sum_probs=178.6
Q ss_pred CCCch-hHHHHHHHHHHHHHHHHHhhcc------hhHHHHHHHHHhhhccccccchhhhhccccccc-CchhhhHHHHHH
Q psy13784 3 KLGRK-PAIILIGIVGIIGWLLITYSLT------ITNLFIGRFLTGVSEGLSASPATIYIAESIMVQ-NTKLRGSLATWA 74 (388)
Q Consensus 3 r~Grr-~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~-~~~~r~~~~~~~ 74 (388)
|+||| +.++.+....+++..++...++ +..+.+..++.+++.....+.-.++..| .. ++++|.+..++.
T Consensus 72 r~Grrrp~il~g~i~~~i~~~llf~~p~~~~~~~~~~~~~~~~l~~~~~t~~~ip~~al~~~---lt~~~~eR~~l~~~~ 148 (473)
T PRK10429 72 RWGKFKPWILIGTLANSVVLFLLFSAHLFEGTAQYVFVCVTYILWGMTYTIMDIPFWSLVPT---LTLDKREREQLVPYP 148 (473)
T ss_pred CCCCcchhHhhhhHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHHcchHHhhhHH---hCCCHHHHHHHHHHH
Confidence 67995 4566677777777666644332 3356666777788888888888899999 77 689999999987
Q ss_pred HHHHHHHHHHHHHHHhH----H-------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCC
Q psy13784 75 TTARAFGLLQVYFMGSL----L-------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGP 143 (388)
Q Consensus 75 ~~~~~~G~~~~~~~~~~----~-------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~ 143 (388)
..+.++|..+.+.+... + +|+....+.+++.++..+..++..||.++. ++.
T Consensus 149 ~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~~~~~~~~e~~~~----~~~-------------- 210 (473)
T PRK10429 149 RFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTIITLRNVHEVYSS----DNQ-------------- 210 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCceecCCc----ccc--------------
Confidence 77777765555443321 1 577777777777766666666656664310 000
Q ss_pred CCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHH
Q psy13784 144 PSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFIT 223 (388)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~ 223 (388)
+..++++..-++.++..++++.++......+. ..........+.+++.+....+....+...
T Consensus 211 -------------~~~~~~~~~~~~~~~~~~~n~~~~~ll~~~~~-----~~~~~~~~~~~~~y~~~y~~~~~~~~~~~~ 272 (473)
T PRK10429 211 -------------VSAEGSHLTLKDIVALIYKNDQLSCLLGMALA-----YNIASNIINGFAIYYFTYVIGDADLFPYYL 272 (473)
T ss_pred -------------ccccccCCCHHHHHHHHhcCHHHHHHHHHHHH-----HHHHHHHHhhheeeEEEEECCCHHHHHHHH
Confidence 00000001112223334455443322222111 112234444455555443322344455566
Q ss_pred HHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccc
Q psy13784 224 VIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFL 303 (388)
Q Consensus 224 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (388)
....+..+++.++.+++.||+|+|+.+..+..+..++.+.+........ ...+...+...+...+.+ ...
T Consensus 273 ~~~~i~~ii~~~~~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~l~g~~~~-~~~ 342 (473)
T PRK10429 273 SYAGAANLVTLILFPRLVKSLSRRILWAGASIFPVLSCGVLLLMGLAAP---------HNALLIVIAGILLNIGTA-LFW 342 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhccCc---------hhHHHHHHHHHHHHHHHH-HHH
Confidence 6666888999999999999999999988777665555544432111111 122333333233333332 233
Q ss_pred cchhhhhccCCc-------hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 304 PIPYLMLGEIFP-------MEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 304 ~~~~~~~~~~~p-------~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
+..+++.+|..+ .+..|..+|.......++..+++.+.|.+.+..|
T Consensus 343 ~~~~am~ad~id~~e~~tG~R~~G~~~s~~~~~~K~~~al~~~i~g~~l~~~G 395 (473)
T PRK10429 343 VLQVIMVADTVDYGEYKLGIRCESIAYSVQTMVVKGGSAFAAFFIGVVLGLIG 395 (473)
T ss_pred HHHHHHHhhhhhhhhHhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 566678888855 3445778999999999999999999999987655
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.7e-19 Score=154.26 Aligned_cols=309 Identities=12% Similarity=0.072 Sum_probs=195.4
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|.|+++.++.+.+++.+++.++++++..+.+.|++.|+++|..+ ....++.. |+|+++|+++.++...+..+
T Consensus 86 aDrlG~K~vL~l~~l~Wsl~t~L~~fa~Sl~~L~i~R~llGvaEA~~~-A~~syI~~---WfP~kER~ratsi~~sg~~v 161 (511)
T TIGR00806 86 TDYLRYKPVLVLQALSFVCVWLLLLLGTSVWHMQLMEVFYSVTMAARI-AYSSYIFS---LVPPSRYQRAAAYSRAAVLL 161 (511)
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH---HCCHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999 99999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH---hHHHHHHHh---HHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccc
Q psy13784 81 GLLQVYFMGSLL---RYRKVAAMA---AIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRG 154 (388)
Q Consensus 81 G~~~~~~~~~~~---~w~~~f~~~---~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
|.+++++++..+ |||..+.+. .....+.+++.+ ++|..++-+.-+++.+.... ...+.+...++ ...
T Consensus 162 G~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~-~LP~~~~sl~f~~~~~~~~~----~~~~~~~~~~~--~~~ 234 (511)
T TIGR00806 162 GVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLAL-FLKRPKRSLFFNRLEDVRGA----LPCELDQMVPG--PGG 234 (511)
T ss_pred HHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHH-hCCCCchhhhhccccccccc----cccccccCCCC--Ccc
Confidence 999999999888 887765543 333334444444 48966553332221110000 00000000000 000
Q ss_pred cccc-ccccc----ccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC-CCcHHHHHHHHHH
Q psy13784 155 DAES-GAQGE----QMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFH-LLNPYFITVIGGL 228 (388)
Q Consensus 155 ~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s-~~~~~~~~~~~~~ 228 (388)
+..+ .+... +.-...+.+..+++...+..++ .....++++.+..|...+.++..-+ +.--|..-.+..+
T Consensus 235 ~~~~~~~~~~~~~~~~l~~~~~~~y~n~~vl~WSlW-----wa~a~~g~~qv~~Y~Q~LW~~v~~~~~~yNG~veA~~tl 309 (511)
T TIGR00806 235 KLEDYLGTCRDSFLVRMLSELVTIYRNPQLLLWSLW-----WVFNSAGYYLITYYVHTLWGTLDESLNKYNGAVDAASTL 309 (511)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhcCcchhhhhHH-----HHHHhhHHHHHHHHHHHHHHHcCCCccccCCHHHHHHHH
Confidence 0000 00000 0112233445556654443333 3344455777888888877665322 2244566667777
Q ss_pred HHHHHHHhhheeecccCCchHHHHhhH--HHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccch
Q psy13784 229 IIFASVISISFILPHTGVKPLSAASGM--GIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIP 306 (388)
Q Consensus 229 ~~~~~~~~~g~l~d~~g~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (388)
.+.+.++..|++-.+..+--.+.++.. +.+..++++.. ..+.|...+...++...+.+.. ++.
T Consensus 310 lga~~a~~ag~~~~~w~~~~~l~l~v~s~~~~gll~~m~~--------------t~~Iw~~Y~~yvlf~~~y~fli-tia 374 (511)
T TIGR00806 310 LGAITSFIAGFVNIRWARWSKLLIAVVSAIQAGLVFWMSQ--------------SHDIWVLYVTYVLFRGIYQFLV-PIA 374 (511)
T ss_pred HHHHHHHHHHhhcCCchhhHHHHHHHHHHHHHHHhhhhhc--------------ccchHHHHHHHHHHHHHHHHHH-HHH
Confidence 888888999988555533222333222 22222222222 3456777777777777776654 555
Q ss_pred hhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13784 307 YLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKT 340 (388)
Q Consensus 307 ~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~ 340 (388)
...+++....+.-|..+|+.++..-+-+.+-..+
T Consensus 375 ~~~iA~~L~~~~~aLvFGiNtfvAl~LQtilT~i 408 (511)
T TIGR00806 375 TFQIASSLSKELCALVFGINTFVATALKTIITAV 408 (511)
T ss_pred HHHHHHHhcccceEEEEecHHHHHHHHHHheEEE
Confidence 5666666677767888888888776666555443
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-17 Score=147.67 Aligned_cols=319 Identities=16% Similarity=0.178 Sum_probs=204.3
Q ss_pred CCCCC-chhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCc--hhhhHHHHHHHHH
Q psy13784 1 MDKLG-RKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNT--KLRGSLATWATTA 77 (388)
Q Consensus 1 sDr~G-rr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~--~~r~~~~~~~~~~ 77 (388)
+||++ +||.+.+..++.++........++++.+++..++..+......|...++..+ ...+ ++-|+.-.+-+.+
T Consensus 61 aDr~~~~~~~l~~~~l~~~~~~~~~~~~~~f~~~~~~~~l~~~~~~p~~pl~dsi~~~---~~~~~~~~YG~iRlwGSiG 137 (400)
T PF03825_consen 61 ADRFGSAKRILALLSLLSALALLLLAFSSSFWWLFVIMLLFSFFFSPTMPLSDSIALS---YLGDRGKDYGRIRLWGSIG 137 (400)
T ss_pred HhHhhhHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHccHHHHHHHHHHH---HcccccCCCCcchhhhhHH
Confidence 69986 5677778778888877777888999999888888888888888888888777 4432 2233333333333
Q ss_pred HHHHHHH-HHHHHhHH---hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcc
Q psy13784 78 RAFGLLQ-VYFMGSLL---RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSR 153 (388)
Q Consensus 78 ~~~G~~~-~~~~~~~~---~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (388)
+.++... +..+.+.. +....+++.+...++.....+. +|+.|+. ++.++
T Consensus 138 f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ll~~~~l~-lp~~~~~---~~~~~----------------------- 190 (400)
T PF03825_consen 138 FIVAALAFGGLLGGYLGISGTSLIFYIAAILSLLLAGFALF-LPKTPPK---RSAKE----------------------- 190 (400)
T ss_pred HHHHHHHHHHHHHhhhccccccHHHHHHHHHHHHHHHHHHh-CCCCccc---cccCC-----------------------
Confidence 3333222 12222222 2234556666555555444444 7887620 00000
Q ss_pred ccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHH
Q psy13784 154 GDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSG-FHLLNPYFITVIGGLIIFA 232 (388)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~s~~~~~~~~~~~~~~~~~ 232 (388)
+.++....+..+++|+|+...-.+..+.. .........|.+.++++.| .+....+....+..+.+++
T Consensus 191 -------~~~~~~~~~~~~llk~~~~~~Fll~~~l~-----~~~~~~~~~f~~~yl~~~gg~~~~~~g~~~~l~~~aEi~ 258 (400)
T PF03825_consen 191 -------SVKKLLGLDALKLLKNPRFLVFLLAAFLI-----GISHAAYYTFFSIYLQELGGYSGSTIGILWALGVVAEIP 258 (400)
T ss_pred -------CcccccchHHHHHhcCccHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHHHHH
Confidence 00011222345788888755433332222 2234667778888898887 7777778888888899999
Q ss_pred HHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHH----HHHHHHHhccccchhh
Q psy13784 233 SVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALV----LNLVASSVGFLPIPYL 308 (388)
Q Consensus 233 ~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~ 308 (388)
.-...+++..|+|.|+++.++....++-..++... .++.+....... +.+..++... .....
T Consensus 259 ~f~~~~~~~~r~g~~~ll~~a~~~~~vR~~l~a~~-------------~~~~~~~~~~~~l~q~lhG~tf~~~~-~a~~~ 324 (400)
T PF03825_consen 259 FFFFSGRFLKRFGIKWLLLLALVAYAVRWLLYAYF-------------SDPWPFIVALQLLGQLLHGLTFGLFH-AASVR 324 (400)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHh-------------cCCcHHHHHHHHHHHhhhhHHHHHHH-HHHHH
Confidence 99999999999999999999999988888887651 112222222221 2344343333 44558
Q ss_pred hhccCCchhhHHHHHHHHHHH-HHHHHHHHHHHhHHHHhhcc-cch------hhHHHHHHHHHHHHhheeccCCC
Q psy13784 309 MLGEIFPMEVKGVAAGLATCL-AYIFGFFAVKTWPTLHLALG-NGI------FFFYGLVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 309 ~~~~~~p~~~r~~~~~~~~~~-~~~g~~~~~~~~g~l~~~~g-~~~------~~~~~~~~~~~~~~~~~~~~~~~ 375 (388)
++.+..|++.|+++.++++.. ..+|..+|..+.|++.|+.| ... +.+.+++.++..++.+++.||++
T Consensus 325 yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~f~~~fk~~~ 399 (400)
T PF03825_consen 325 YIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVLFVILFKPKH 399 (400)
T ss_pred HHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence 999999999999999998876 46899999999999999988 432 33344444444444445555443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=7.3e-17 Score=142.44 Aligned_cols=295 Identities=17% Similarity=0.141 Sum_probs=207.0
Q ss_pred CCCchhH-HHHHHHHHHHHHHHHHhhcc------hhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHH
Q psy13784 3 KLGRKPA-IILIGIVGIIGWLLITYSLT------ITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWAT 75 (388)
Q Consensus 3 r~Grr~~-~~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~ 75 (388)
|+||||. ++++.+-.++.+.++-.+++ ....++...+.+++.......-.++..|+ .-+++||.+..++-.
T Consensus 78 r~GrfRP~lL~g~ip~~i~~~l~F~~p~~~~~~k~~ya~vtY~l~~l~YT~vniPy~al~~~i--T~d~~ER~~l~s~R~ 155 (467)
T COG2211 78 RWGRFRPWLLWGAIPFAIVAVLLFITPDFSMTGKLIYALVTYMLLGLGYTLVNIPYGALGPEI--TQDPQERASLTSWRM 155 (467)
T ss_pred ccccccHHHHHHhHHHHHHHHHHHcCCCcccCcchHHHHHHHHHHHHHHHheeCchhhcchhh--cCCHHHHHHHHHHHH
Confidence 7898766 56677888888888888764 45677788899999999988888999984 446899999999999
Q ss_pred HHHHHHHHHHHHHHhHH-----------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCC
Q psy13784 76 TARAFGLLQVYFMGSLL-----------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPP 144 (388)
Q Consensus 76 ~~~~~G~~~~~~~~~~~-----------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~ 144 (388)
.+.++|.++...+...+ ||+..-.+.+++..+..+.+++-.+|.+. ++.+.+
T Consensus 156 ~~~~~g~~l~~~~~~plv~~~g~~~~~~g~~~~~~~~~vi~~i~~l~~~~~v~ER~~---~~~~~~-------------- 218 (467)
T COG2211 156 VFASLGGLLVAVLFPPLVKLFGGGDKALGYQGTALVLGVIGVILLLFCFFNVKERVV---ETQPTK-------------- 218 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHHHHHHHHHHHHHHHHhhcccC---ccccCc--------------
Confidence 99999977766555444 89999999999999988888886666542 000000
Q ss_pred CCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHH
Q psy13784 145 SNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFIT 223 (388)
Q Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~ 223 (388)
+..+++.+.++...++|+.++......+ +.+.+.+.......+|.+ .+|.+........
T Consensus 219 ---------------~~~~~~~~~~~~~~~~Nrp~~~~l~~~l-----~~~~~~~i~~s~~~yy~~y~lg~~~l~~~~~~ 278 (467)
T COG2211 219 ---------------TGVKLKLKDSFLLIFKNRPLLLLLLMNL-----LLFIAFNIRGSIMVYYVTYVLGDPELFAYLLL 278 (467)
T ss_pred ---------------ccccccHHHHHHHHHccchHHHHHHHHH-----HHHHHHHHHhhhhheeEEEEcCChHHHHHHHH
Confidence 0001112223345667766554433222 222233444444444444 3466566677777
Q ss_pred HHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccc
Q psy13784 224 VIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFL 303 (388)
Q Consensus 224 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (388)
.......+++.++..++.+|+|+|++...+.++..++.+++.+.. .++.+..++..++...+. ....
T Consensus 279 ~~~~~~~l~~~~~~p~L~~~~gkk~~~~~~~~~~~i~~~~~~f~~------------~~~~~l~~~~~~i~~~g~-~~~~ 345 (467)
T COG2211 279 LASGAGLLIGLILWPRLVKKFGKKKLFLIGLLLLAVGYLLLYFTP------------AGSVVLIVVALIIAGVGT-GIAN 345 (467)
T ss_pred HHHHHHHHHHHHhHHHHHHHhchHHHHHHHHHHHHHHHHHHHhhc------------CcchHHHHHHHHHHHHHh-hccc
Confidence 777777788899999999999999999999988888888876521 112233333333333444 4456
Q ss_pred cchhhhhccCCc-------hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 304 PIPYLMLGEIFP-------MEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 304 ~~~~~~~~~~~p-------~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
+..+++++|... .+..|...|...++.-+|.+++..+.|++.+..|
T Consensus 346 ~l~wam~~d~vDyge~~TG~R~eGi~~s~~tF~~K~g~ala~~~~g~~L~~~G 398 (467)
T COG2211 346 PLPWAMVADTVDYGEWKTGVRREGIVYSGMTFFRKLGLALAGFIPGWILGAIG 398 (467)
T ss_pred cccHHHhcchhhHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 899999999864 3445888999999999999999999999998776
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.4e-17 Score=148.53 Aligned_cols=291 Identities=16% Similarity=0.159 Sum_probs=203.1
Q ss_pred CCCchhH-HHHHHHHHHHHHHHHHhh-c-------chhHHHHHHHHHhhhccccccchhhhhcccccccC-chhhhHHHH
Q psy13784 3 KLGRKPA-IILIGIVGIIGWLLITYS-L-------TITNLFIGRFLTGVSEGLSASPATIYIAESIMVQN-TKLRGSLAT 72 (388)
Q Consensus 3 r~Grr~~-~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~-~~~r~~~~~ 72 (388)
|+||||. ++.+....+++..++... + ....+.+..++..++.......-.++..| ..+ +++|.+..+
T Consensus 67 r~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~~~~~~~~~~~~~~l~~~~~t~~~i~~~al~~~---lt~~~~~R~~l~~ 143 (428)
T PF13347_consen 67 RWGRRRPWILIGAILLALSFFLLFSPPPAGLSFTAKLVWLFVFYILFDIAYTFVQIPYNALIPE---LTPDPDERTRLSS 143 (428)
T ss_pred cccccceEeehhhHHHHHHHHHhhccccchhhhhhHHHHHHHHHHHHHHhhhhccCchhhcCcc---ccccHhhhhhHHH
Confidence 8998876 456778888877777766 4 23346777778899999998988999999 776 578999999
Q ss_pred HHHHHHHHHHHHHHHHHhHH-----------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcC
Q psy13784 73 WATTARAFGLLQVYFMGSLL-----------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRL 141 (388)
Q Consensus 73 ~~~~~~~~G~~~~~~~~~~~-----------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~ 141 (388)
.-..+..+|.++...+...+ +|++...+.+++.++..++..+..+|.++ +.+
T Consensus 144 ~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke~~~------~~~----------- 206 (428)
T PF13347_consen 144 WRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKERSV------EVT----------- 206 (428)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeeeccc------ccc-----------
Confidence 99998888887655555444 49999999999999888888887777211 000
Q ss_pred CCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCCCcHH
Q psy13784 142 GPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNPY 220 (388)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~ 220 (388)
.++++.+-++.+++.+++|.++.......+. ..+........+++.+. .|. +...+
T Consensus 207 -----------------~~~~~~~~~~~~~~~~~nr~~~~l~~~~~~~-----~~~~~~~~~~~~y~~~~vl~~-~~~~~ 263 (428)
T PF13347_consen 207 -----------------EQEKKISLRDSLRSLFRNRPFRILLLAFFLQ-----WLAFALMNTFLPYYFTYVLGN-EGLIS 263 (428)
T ss_pred -----------------ccccccccccchhhhcccchHHHHHHHHHHH-----HhhhhhhhhHHHHHHHHHhcC-chhhH
Confidence 0001112234456677776655433222222 22233444455555553 344 35566
Q ss_pred HHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHh
Q psy13784 221 FITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSV 300 (388)
Q Consensus 221 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (388)
.......+..+++.++.++++||+|+|+.+..+..+.+++.+.+.+... .+.+...+...+.+.+. .
T Consensus 264 ~~~~~~~~~~~v~~~~~~~l~~r~gk~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~i~~~l~gi~~-~ 330 (428)
T PF13347_consen 264 IFMLIFFVASIVGSPLWGRLSKRFGKKKVYIIGLLLAALGFLLLFFLGP------------GSPWLVLILFILAGIGY-G 330 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccceeehhhhHHHHHHHHHHHHHHHh------------hhHHHHHHHHHHhHhhh-c
Confidence 7777888899999999999999999999999999988888887755211 13344444433344333 4
Q ss_pred ccccchhhhhccCCch-------hhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 301 GFLPIPYLMLGEIFPM-------EVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 301 ~~~~~~~~~~~~~~p~-------~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
......+++.+|..+. +..|..+|+.+....++..+++.+.+.+.+..|
T Consensus 331 ~~~~~~~a~~ad~id~~e~~tg~r~~g~~~s~~~~~~k~~~~la~~i~g~~l~~~G 386 (428)
T PF13347_consen 331 AFFVIPWAMLADVIDYDEWKTGRRREGMYFSVNSFFIKIGQGLAGAIVGLLLALVG 386 (428)
T ss_pred ccccccccccccchhhHHHhcCCCchHHHHHhhhhhhHHHHHHHHHHHHHHHHHhC
Confidence 4457778899998873 346899999999999999999999999887765
|
|
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-17 Score=142.23 Aligned_cols=323 Identities=14% Similarity=0.089 Sum_probs=223.5
Q ss_pred CCCCCchhH-HHHHHHHHHHHHHHHHhhcc--h-hHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHH
Q psy13784 1 MDKLGRKPA-IILIGIVGIIGWLLITYSLT--I-TNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATT 76 (388)
Q Consensus 1 sDr~Grr~~-~~~~~~~~~~~~~~~~~~~~--~-~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~ 76 (388)
+|+.|+||. +-....+..++..+..++++ + +..++...+..++.....+.-.+++.+ ..++++-++..+.-..
T Consensus 82 aD~~g~Rk~~~~~f~~i~i~~~~~L~~i~~~s~~~~~l~~~il~~i~~~~s~Vfyds~L~~---~~~k~~~~riS~lg~~ 158 (438)
T COG2270 82 ADYPGPRKKFFGFFTAIGIISTFLLWFIPPGSYLLLLLLFLILASIGFEFSNVFYDSMLPR---LTTKDNMGRISGLGWA 158 (438)
T ss_pred hccCCCcchHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhcchhheehhhHhhh---hcCccccCcccccccc
Confidence 588887765 45555566666677777755 4 445556678889999999999999999 8999888888888777
Q ss_pred HHHHHHHHHHHHHhHH----------------------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCCh-hhHH
Q psy13784 77 ARAFGLLQVYFMGSLL----------------------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRR-GDAE 133 (388)
Q Consensus 77 ~~~~G~~~~~~~~~~~----------------------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~-~~~~ 133 (388)
...+|..+.-+..... .-|..+.+.++..++..+..++..||.++- +.+. ....
T Consensus 159 ~gylgs~i~li~~~~~~~~~~~~~~~~~l~~l~~~~~~~~ri~~~l~A~W~li~~iPm~~~v~~~~~~---~~~~~~~l~ 235 (438)
T COG2270 159 LGYLGSVILLIFVVLGFALGQQTGITIILLGLPPADGEDVRITGLLAALWWLLFALPMILNVHDAEKI---SSPPPTALR 235 (438)
T ss_pred cccccchHHHHHHHHHHhcccccceeEEeeccCccccccchhHHHHHHHHHHHHHhHHHhcccccccc---cccchHHHH
Confidence 7777776665543111 468888888888888888888777776531 0000 0000
Q ss_pred HHHHHhcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-Hc
Q psy13784 134 WAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SS 212 (388)
Q Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 212 (388)
+.. ++-+.++++..+.+. +..+++..+....+.+.+......+-. ++
T Consensus 236 ~g~---------------------------k~L~~t~k~i~~~~~-----i~~FLiA~~~~~DGv~til~~~~~fg~~~~ 283 (438)
T COG2270 236 NGF---------------------------KELKSTFKEIRGRKN-----LVLFLIARFFYIDGVNTILAMGGVFGAADL 283 (438)
T ss_pred HHH---------------------------HHHHHHHHHHhcccc-----hHHHHHHHHHHHhhHHHHHHHHHHHHHHHc
Confidence 000 111223344433332 223333444455567788888888887 78
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHH
Q psy13784 213 GFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALV 292 (388)
Q Consensus 213 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (388)
|++..+.........+..++|+++.|++.||+|.|+++..+.++..+..+...+. .. ...+....
T Consensus 284 gls~~~lll~g~~~~vvA~lg~ii~g~Ld~rfg~k~vl~~~lvi~~~~~~~~~~~--------------~~-~~~f~i~g 348 (438)
T COG2270 284 GLSSTELLLIGIALSVVAALGAIIAGFLDERFGSKPVLMIGLVILSIAALYLIFL--------------EG-ELDFWILG 348 (438)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeehHHHHHHHHHHHHHHHc--------------cc-cHHHHHHH
Confidence 9999999999999999999999999999999999988888777666555544331 11 22222333
Q ss_pred HHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc--cchhhHHHHHHHHHHHHhhee
Q psy13784 293 LNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG--NGIFFFYGLVAAIGTAHVLAY 370 (388)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~~~~~~~~~~~~~ 370 (388)
+..+.+..+.....-++..+.+|+++.++.+|+++..++..+++||...+.+.+..| ...+....++..++.+ .+..
T Consensus 349 ll~g~s~G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~-~L~~ 427 (438)
T COG2270 349 LLVGTSLGGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLL-LLLR 427 (438)
T ss_pred HHHHHhcchHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHh-hEEe
Confidence 344444455567778999999999999999999999999999999999999999988 4445555555555554 4455
Q ss_pred ccCCCCC
Q psy13784 371 LPETKGK 377 (388)
Q Consensus 371 ~~~~~~~ 377 (388)
.|+.+++
T Consensus 428 v~~~~~~ 434 (438)
T COG2270 428 VKVPGRR 434 (438)
T ss_pred ecCCCCc
Confidence 5655443
|
|
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-17 Score=133.57 Aligned_cols=312 Identities=14% Similarity=0.067 Sum_probs=188.5
Q ss_pred CCCchhHHHHHHHHHHHHHHHHH---hhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHH
Q psy13784 3 KLGRKPAIILIGIVGIIGWLLIT---YSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARA 79 (388)
Q Consensus 3 r~Grr~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~ 79 (388)
|+|-|..-++-+....++-++.+ .++.+|.+..+|++.|+|.-..-+.-..|... |+..|+.+.++|+.....-
T Consensus 106 ~fgir~gtii~~~fv~~GqliFa~Ggi~~aFw~M~~GRF~FGIGgESlAVaQN~yav~---wFKGKELn~vfGlqlSvAR 182 (459)
T KOG4686|consen 106 RFGIRLGTIILCIFVFLGQLIFAAGGISHAFWTMLAGRFLFGIGGESLAVAQNKYAVY---WFKGKELNFVFGLQLSVAR 182 (459)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhheeeccCchhhhhhhcceeEE---EecCccccchhhHHHHHHH
Confidence 46766655555555555655554 45999999999999999988887888899999 9999999999999999998
Q ss_pred HHHHHHHHHHhHH-hHHHHHH------------HhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCC
Q psy13784 80 FGLLQVYFMGSLL-RYRKVAA------------MAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSN 146 (388)
Q Consensus 80 ~G~~~~~~~~~~~-~w~~~f~------------~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (388)
+|..+-..+..++ +.-.-++ ..+...+..-+.... +-.| .++.+++.+++-+....+.
T Consensus 183 ~GstvNf~lm~~ly~~~~~~~~~~ghT~LG~~l~~~~~tc~~slical----~lg~-----~D~rAerilh~e~g~~Ge~ 253 (459)
T KOG4686|consen 183 LGSTVNFLLMPFLYDTMGRMFPGVGHTLLGLWLCFEVKTCKQSLICAL----SLGL-----SDDRAERILHLEEGFLGEE 253 (459)
T ss_pred hhceeeeeecHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHH----Hhhh-----hhhHHHHHHhhhcCcccCC
Confidence 8887665554444 1111111 111111111111111 0000 1122333332222111110
Q ss_pred CCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHH
Q psy13784 147 QTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVI 225 (388)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~ 225 (388)
+ + -.+..+ ++ |.+|....+ ..+.......+....|.+++ ..|+|+..++.+.+.
T Consensus 254 p----------k-----Ltdv~~----f~-ppfw~~~ii-----cv~yyva~fPFi~lg~~fF~~rfGlS~~~a~~i~s~ 308 (459)
T KOG4686|consen 254 P----------K-----LTDVNT----FY-PPFWVLVII-----CVLYYVAWFPFITLGPMFFQKRFGLSAVSAGNILST 308 (459)
T ss_pred c----------c-----cccccc----cC-ccHHHHHHH-----HHHHHHHHHHHhhhhHHHHHHhhCCChhhccchhhh
Confidence 0 0 001111 11 233332222 22222234566677788886 569999999999998
Q ss_pred HHHHHHHHHHhhheeecccCCchHHHHhhHH-HHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhcccc
Q psy13784 226 GGLIIFASVISISFILPHTGVKPLSAASGMG-IALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLP 304 (388)
Q Consensus 226 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (388)
......+.+.+.|.++||.|++...+.+..+ ...+...+.+. ..+++. ..++.+..+... ..
T Consensus 309 vy~Isav~spvfg~i~Dk~G~n~~wv~~a~~~tl~~H~~l~Ft-------------~lsPy~---~m~~lGLsysll-Ac 371 (459)
T KOG4686|consen 309 VYGISAVLSPVFGAISDKYGFNLWWVASACILTLLGHSGLFFT-------------FLSPYT---SMTFLGLSYSLL-AC 371 (459)
T ss_pred hhhhhhhhhhhHHHhHhhhcceehhHHHHHHHHHHHhhhHHhh-------------hccHHH---HHHHHhhhHHHH-HH
Confidence 8888999999999999999999776655543 34444444331 112232 222233333221 23
Q ss_pred chhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-c----chhhHHHHHHHHHHHHhh
Q psy13784 305 IPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-N----GIFFFYGLVAAIGTAHVL 368 (388)
Q Consensus 305 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~----~~~~~~~~~~~~~~~~~~ 368 (388)
..|..++-+.|+++.|++.|.++++.++|-.+.|.+.|.+.|..| + ..++....+.++...+.+
T Consensus 372 slWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~svgil~ 440 (459)
T KOG4686|consen 372 SLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTSVGILF 440 (459)
T ss_pred HHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHHHHHHh
Confidence 456778888999999999999999999999999999999998877 2 233444444444444333
|
|
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.6e-16 Score=141.91 Aligned_cols=288 Identities=11% Similarity=-0.024 Sum_probs=170.1
Q ss_pred CCCchhHH-HHHHHHHHHHHHHHHhhcc------hhHHHHHHHHHhhhccccccchhhhhcccccccC-chhhhHHHHHH
Q psy13784 3 KLGRKPAI-ILIGIVGIIGWLLITYSLT------ITNLFIGRFLTGVSEGLSASPATIYIAESIMVQN-TKLRGSLATWA 74 (388)
Q Consensus 3 r~Grr~~~-~~~~~~~~~~~~~~~~~~~------~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~-~~~r~~~~~~~ 74 (388)
|+||||.. +++....+++..++-..++ ...+.+..++..++.......-.++..| ..+ ++||++..++.
T Consensus 75 r~Gr~rp~il~g~i~~~i~~~llf~~p~~s~~~~~~y~~~~~~~~~~~~t~~~ipy~al~~~---lt~d~~eRt~l~s~r 151 (460)
T PRK11462 75 RWGKFRPWVLFGALPFGIVCVLAYSTPDLSMNGKMIYAAITYTLLTLLYTVVNIPYCALGGV---ITNDPTQRISLQSWR 151 (460)
T ss_pred CCCCcchhHhHHHHHHHHHHHHHHhCCCCCcchHHHHHHHHHHHHHHHHHHHhccHHHHHHH---hcCCHHHHHHHHHHH
Confidence 68998765 4566777777766655543 3456666777788888888888889999 555 89999999999
Q ss_pred HHHHHHHHHHHHHHHhHH-----------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCC
Q psy13784 75 TTARAFGLLQVYFMGSLL-----------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGP 143 (388)
Q Consensus 75 ~~~~~~G~~~~~~~~~~~-----------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~ 143 (388)
..+..+|..+++.+...+ +|+....+.+++.++...+.+...+|.++. +
T Consensus 152 ~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~~~~-----~--------------- 211 (460)
T PRK11462 152 FVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKERVEA-----P--------------- 211 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceeccCC-----C---------------
Confidence 999998887776664332 477777777777766666555544553210 0
Q ss_pred CCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCCCcHHHH
Q psy13784 144 PSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNPYFI 222 (388)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~ 222 (388)
+++...++..+..++++.++..... ....... .........++.+. .|. +...+..
T Consensus 212 -----------------~~~~~~~~~l~~~~~Nk~~~~l~~~-~~~~~~~----~~~~~~~~~y~~~y~~g~-~~~~~~~ 268 (460)
T PRK11462 212 -----------------PTTTSMREDLRDIWQNDQWRIVGLL-TIFNILA----VCVRGGAMMYYVTWILGT-PEVFVAF 268 (460)
T ss_pred -----------------ccCCCHHHHHHHHhCChHHHHHHHH-HHHHHHH----HHHHHhHhhhhhhhhcCC-hHHHHHH
Confidence 0000112334555666654432211 1111111 11122222222221 232 2334455
Q ss_pred HHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhcc
Q psy13784 223 TVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGF 302 (388)
Q Consensus 223 ~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (388)
.....+..+++.++++++.||+++|+....+.....+..+.+.+ ... ...+......++... .....
T Consensus 269 l~~~~i~~iig~~l~~~l~~r~gkk~~~~~~~~~~~~~~~~~~~---~~~---------~~~~~~~~~~~l~g~-~~~~~ 335 (460)
T PRK11462 269 LTTYCVGNLIGSALAKPLTDWKCKVTIFWWTNALLAVISLAMFF---VPM---------QASITMFVFIFVIGV-LHQLV 335 (460)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHH---hch---------hHHHHHHHHHHHHHH-HHHHH
Confidence 66777888999999999999999998766544433332222211 111 111222222222222 22333
Q ss_pred ccchhhhhccCCc-------hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 303 LPIPYLMLGEIFP-------MEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 303 ~~~~~~~~~~~~p-------~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
.+..+++.+|..+ .+..|...+.......+|..+++.+.|.+.+..|
T Consensus 336 ~~l~~~m~ad~~d~~e~~tG~r~~g~~~a~~~f~~Klg~alg~~i~g~iL~~~G 389 (460)
T PRK11462 336 TPIQWVMMSDTVDYGEWCNGKRLTGISFAGTLFVLKLGLAFGGALIGWMLAYGG 389 (460)
T ss_pred HHHHHHHHHHhHhhhHHhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4555667777655 3334666677778999999999999999887654
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-17 Score=144.99 Aligned_cols=323 Identities=13% Similarity=0.124 Sum_probs=194.4
Q ss_pred CCCCCchhHHHHHHHHHH--HHHH-HHHhh----cchh-HHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGI--IGWL-LITYS----LTIT-NLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLAT 72 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~--~~~~-~~~~~----~~~~-~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~ 72 (388)
+||+|.||-++....+.. .+.. ...+. .|++ ..+++-...|+......|+..+++.+ + .++.+.-.|
T Consensus 67 ~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pll~~n~~lg~iig~i~l~~~f~~~~~~~Ea~~er---~--sr~~~feYG 141 (412)
T PF01306_consen 67 SDKLGLKKHLLWFIAILLLLFGPFFIYVFGPLLQSNFWLGAIIGGIYLGLVFNAGVPLSEAYAER---V--SRRNGFEYG 141 (412)
T ss_dssp HHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHHHHTT-HHHHHHTTTTTTTTTTTHHHHHHHHHHH---H--HHHHSS-HH
T ss_pred cchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH---H--HHHhcCCcc
Confidence 599997776554433322 1222 21222 2222 23333344455555555666666555 2 223344455
Q ss_pred HHHHHHHHHHHHHHHHHhHH---hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCC
Q psy13784 73 WATTARAFGLLQVYFMGSLL---RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTE 149 (388)
Q Consensus 73 ~~~~~~~~G~~~~~~~~~~~---~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (388)
-.-...++|.+++..+++.+ +-+..|++....+++..++.++.-||.++.....
T Consensus 142 ~~R~wGSig~ai~s~~~G~L~~i~p~~~fwi~s~~~~il~lll~~~~~~~~~~~~~~----------------------- 198 (412)
T PF01306_consen 142 RARMWGSIGFAIASLLAGILFNINPNIIFWIASAAAIILLLLLLLLKPDVPPQAEVA----------------------- 198 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS---SSSSS-SS-----------------------
T ss_pred hHHHHhhHHHHHHHHHhheeeeeCccHHHHHHHHHHHHHHHHHHHcCCcCchhhhhh-----------------------
Confidence 55666667777777777766 6678888777766666665555344433210000
Q ss_pred CCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc----CCCCCcHHHHHHH
Q psy13784 150 PTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSS----GFHLLNPYFITVI 225 (388)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----g~s~~~~~~~~~~ 225 (388)
+ .+..++++.+.+...+++|+|++|...+........ +..+-...+.|+... +.++...+...+.
T Consensus 199 -----~-~~~~~~~~~~~~~~~~l~k~~~fw~~~l~v~g~~~~-----Y~vfdqqf~~y~~~~f~~~~~g~~~~G~l~s~ 267 (412)
T PF01306_consen 199 -----D-ALGAKKDKVSLKDVLSLFKMRNFWFFVLFVIGVAAI-----YDVFDQQFPIYFASFFQSAGQGNQMYGYLWSV 267 (412)
T ss_dssp -----T-TSSS------HHHHHHHTTSHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHH
T ss_pred -----c-ccccCCCCCcHHHHHHHhcchhHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhcccccChhHHhHHHHH
Confidence 0 000011112234556788888766543333322222 333333344444432 3334557888888
Q ss_pred HHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccc
Q psy13784 226 GGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPI 305 (388)
Q Consensus 226 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (388)
..+.+++...+..++.+|+|.|+.++++..++.+-....++ .++.+.....=.+...-+.... ..
T Consensus 268 ~v~~E~~~m~~~p~li~rig~k~~Lllag~i~~iRi~~~~~--------------~~~~~~i~~~klLH~~e~~l~l-va 332 (412)
T PF01306_consen 268 QVFLEALMMFFSPWLINRIGAKNLLLLAGVIMAIRIIGSGF--------------ATNPWVISLIKLLHALEFPLLL-VA 332 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHT----------------SHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHHHHHHhcChHhHHHHHHHHHHHHHHHHhh--------------hcchHHHHHHHHHHHHHHHHHH-HH
Confidence 88999999999999999999999999999999999888876 2344444444444444444433 34
Q ss_pred hhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheeccCCCCC
Q psy13784 306 PYLMLGEIFPMEVKGVAAGLA-TCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPETKGK 377 (388)
Q Consensus 306 ~~~~~~~~~p~~~r~~~~~~~-~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (388)
..-+..+.+|++..++...+. +...+++..+.+.+.|.+.|+.| ...+++.+.+.+...++..+.+++.++.
T Consensus 333 ~fkYI~~~fd~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~~G~~~tylimg~iv~~~~li~~f~l~~~~~~ 406 (412)
T PF01306_consen 333 AFKYITAHFDKRLSATLYLVGFQFAKQIGIIILSPLAGYLYDRIGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ 406 (412)
T ss_dssp HHHHHHHHS-GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred HHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhhcCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence 448999999999999999886 57778999999999999999999 7889899988888777777777665543
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-18 Score=154.15 Aligned_cols=318 Identities=15% Similarity=0.074 Sum_probs=192.4
Q ss_pred CCCCC-----chhHHHHHHHHHH-HHHHHHHhhcchhHHH-HHHHHHhhhccccccchhhhhcccccccCchhhhHHHH-
Q psy13784 1 MDKLG-----RKPAIILIGIVGI-IGWLLITYSLTITNLF-IGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLAT- 72 (388)
Q Consensus 1 sDr~G-----rr~~~~~~~~~~~-~~~~~~~~~~~~~~~~-~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~- 72 (388)
+||++ ||+.++++.++.+ +.....+..++..... +.+++.+++.+...++..++..| ..+ +++....+
T Consensus 84 ~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e---~~~-~~~~~~~~~ 159 (468)
T TIGR00788 84 SDTFPLFGYTKRWYLVLSGLLGSAILYGLLPGKVSSAKVAAAFIFLAALAKALYDVLVDSLYSE---RIR-ESPSAGPSL 159 (468)
T ss_pred HHhcCCCCccchHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhHHHHHhh---hhh-cCCCcCCCe
Confidence 58997 7777777776663 4433334445544444 48899999999999999999999 777 54444333
Q ss_pred --HHHHHHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCC
Q psy13784 73 --WATTARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSN 146 (388)
Q Consensus 73 --~~~~~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (388)
......++|.++++.+++.+ +||..|++.++..++..+...+ +||++.....+.+.++ ......
T Consensus 160 ~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~-~~E~~~~~~~~~~~~~-~~~~~~-------- 229 (468)
T TIGR00788 160 VSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNL-SKERRAFVRPRIGTYL-EMNMAL-------- 229 (468)
T ss_pred eeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHh-cccccccccccccccc-hhhhhh--------
Confidence 33333457888888888776 8999999998888777444444 8885310000000000 000000
Q ss_pred CCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHH
Q psy13784 147 QTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIG 226 (388)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~ 226 (388)
.. ....+..++...+.++.+++|..++.....++.+.. ..+. ....+. ...+..|+++.+.+......
T Consensus 230 -----~~---~~~~~~~~~~~~~l~~~l~~~~i~~~l~fifl~~~~--~~~~-~~~~f~-~~~~~lG~s~~~~G~~~~~~ 297 (468)
T TIGR00788 230 -----LT---LGVLANVKVQILGLRGAIQLLEIAKPLIFIFLSYAN--LPGA-SGSVFC-ATTQCLPGGPSFSGMSKVVG 297 (468)
T ss_pred -----hh---hhHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHhh--cCCC-CceeEE-EEcccCCCCcchhhhHHHHH
Confidence 00 000000011122344555555544433322221111 1110 000110 11135699999999999999
Q ss_pred HHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccch
Q psy13784 227 GLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIP 306 (388)
Q Consensus 227 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (388)
+++.+++....+++.+|++.|+.+..+.++..++.+.........+. . ......+.......+.....+....+.
T Consensus 298 ~v~~i~g~~~~~~~~~~~~~r~~l~~~~~l~~~~~~~~~~l~~~~~~---~-~gi~~~~~~~~~~~l~~~~~g~~~~~~- 372 (468)
T TIGR00788 298 NLGSLCGVGGYDRFLKTFPYRLLFGVTTLLYTLSSLFDLILVKRWNL---A-FGISDEVFVLGDSIIAEVLAQLKFMPF- 372 (468)
T ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHhCceeeeecccc---c-cCCCCeeeeeehhHHHHHHHHHHHccH-
Confidence 99999999999999999999999888887777766543211100000 0 000112222333334444444555455
Q ss_pred hhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 307 YLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 307 ~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
..++.+..|++.+|+.+++.+++.++|..+++.+.+.+.+..|
T Consensus 373 ~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g 415 (468)
T TIGR00788 373 LVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG 415 (468)
T ss_pred HHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5899999999999999999999999999999999999998877
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.1e-16 Score=142.48 Aligned_cols=292 Identities=12% Similarity=0.005 Sum_probs=166.0
Q ss_pred CCCC----CchhHH-HHHHHHHHHHHHHHHhhc-----c--hhHHHHHHHHHhhhccccccchhhhhcccccccCchhhh
Q psy13784 1 MDKL----GRKPAI-ILIGIVGIIGWLLITYSL-----T--ITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRG 68 (388)
Q Consensus 1 sDr~----Grr~~~-~~~~~~~~~~~~~~~~~~-----~--~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~ 68 (388)
+||. ||||.. ..+.+...+...+....+ + .....+..++.+++.+...+...++..++ ..++++|.
T Consensus 68 ~Dr~~~~~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~--~~~~~~r~ 145 (448)
T PRK09848 68 VDSVNTRWGKFRPFLLFGTAPLMIFSVLVFWVPTDWSHSSKVVYAYLTYMGLGLCYSLVNIPYGSLATAM--TQQPQSRA 145 (448)
T ss_pred eecCCCCCcCchHHHHHHHHHHHHHHHHHHhCcCCCCcchHHHHHHHHHHHHHHHHHHhcccHhhhhhhh--cCCHHHHH
Confidence 5765 888765 555554554444432111 1 22344556677888888887777777772 33457888
Q ss_pred HHHHHHHHHH-----HHHHHHHHHHHhHH------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHH
Q psy13784 69 SLATWATTAR-----AFGLLQVYFMGSLL------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAK 137 (388)
Q Consensus 69 ~~~~~~~~~~-----~~G~~~~~~~~~~~------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~ 137 (388)
+..++-..+. .+|..++|.++... +|.....+.+++.++..++.....||+++. +
T Consensus 146 ~~~~~r~~~~~~~~~~~~~~~~p~i~~~~g~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~e~~~~---~----------- 211 (448)
T PRK09848 146 RLGAARGIAASLTFVCLAFLIGPSIKNSSPEEMVSVYHFWTIVLAIAGMVLYFICFKSTRENVVR---I----------- 211 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHcCcEeccCC---C-----------
Confidence 8877665433 34555566655432 122222233333333333333334554210 0
Q ss_pred HhcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCC
Q psy13784 138 RLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHL 216 (388)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~ 216 (388)
+++...+.++++.+++|.+....+..++. ...........|.++++ .|.++
T Consensus 212 -----------------------~~~~~~~~~~~~l~~n~~f~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~g~~~ 263 (448)
T PRK09848 212 -----------------------VAQPSLKISLQTLKRNRPLFMLCIGALCV-----LISTFAVSASSLFYVRYVLNDTG 263 (448)
T ss_pred -----------------------ccCCCHHHHHHHHhCCchHHHHHHHHHHH-----HHHHHHHhhhheeeEeeecCChH
Confidence 00001123356677777654433322222 22233444556666653 46544
Q ss_pred CcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHH
Q psy13784 217 LNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLV 296 (388)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (388)
...+.......++.+++.++.+++.||+|+|+.+..+..+..++.+.+.+ .. ..+.+.......+...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~l~~~l~~r~g~~~~~~~g~~~~~i~~~~~~~---~~---------~~~~~~~~~~~~l~g~ 331 (448)
T PRK09848 264 LFTVLVLVQNLVGTVASAPLVPGMVARIGKKNTFLIGALLGTCGYLLFFW---VS---------VWSLPVALVALAIASI 331 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH---cC---------chhHHHHHHHHHHHHH
Confidence 44444344445667888999999999999999999888877777665543 11 1122332332333333
Q ss_pred HHHhccccchhhhhccCCchh-------hHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 297 ASSVGFLPIPYLMLGEIFPME-------VKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~p~~-------~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
+... ..+..+++.+|..|.+ .+|...|+.+....+|..+++.+.+.+.+..|
T Consensus 332 G~~~-~~~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~~~G 390 (448)
T PRK09848 332 GQGV-TMTVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILGLSG 390 (448)
T ss_pred HHHH-HHHHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3333 3356667888877654 35999999999999999999999999887655
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.9e-15 Score=135.80 Aligned_cols=332 Identities=11% Similarity=0.015 Sum_probs=172.9
Q ss_pred CCCC-CchhHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHhhhccccccchhhhhcccccccCch--hhhHHHHHHHH
Q psy13784 1 MDKL-GRKPAIILIGIVGIIGWLLITYSL-TITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTK--LRGSLATWATT 76 (388)
Q Consensus 1 sDr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~--~r~~~~~~~~~ 76 (388)
+||+ ||||+++++.++..++.++.+..+ +...+.+...+.++|.|...+...++++| .+|++ +|..+.++...
T Consensus 69 aDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~e---lfp~~~~~R~sgf~i~Y~ 145 (493)
T PRK15462 69 ADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGE---LYEPTDPRRDGGFSLMYA 145 (493)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHH---HCCCCCccccceehHHHH
Confidence 5999 999999999999999988776543 22334444455556677777878899999 89875 79999999999
Q ss_pred HHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHH-hhcCChhhHHHHHHHhcCC-CCCCCCCC
Q psy13784 77 ARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWL-NSKGRRGDAEWAAKRLRLG-PPSNQTEP 150 (388)
Q Consensus 77 ~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 150 (388)
+.++|..++|.+.+++ |||+.|.+.++..++..+..+. ..+..+.. ..+++..+.++........ -......+
T Consensus 146 ~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l~li~~~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (493)
T PRK15462 146 AGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIAGLVIFLC-GNRHFTHTRGVNKKVLRATNFLLPNWGWLLVLLVATP 224 (493)
T ss_pred HHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHHHHHHHHH-hhhhhccCCCCCCCCchhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 8999999876644443333322 11110000 0000000000000000000 00000000
Q ss_pred Ccc-cccc-cccccc----c-cccc----hhhhhccCccchHHHHHHHHH--HHHHHhhhHHHHHHHHHHHHHH------
Q psy13784 151 TSR-GDAE-SGAQGE----Q-MSTT----NIFKEFMKPEAYKPLIIISLF--FLFQQFSAVNVILAYMTDFVRS------ 211 (388)
Q Consensus 151 ~~~-~~~~-~~~~~~----~-~~~~----~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~------ 211 (388)
... .... +..... . .... -..+. .++.-+++......+ .....+..+.....-...+.++
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~er~r~~~~~~l~~~~~~Fw~~~~Q~~~sl~lfa~~~vd~~~ 303 (493)
T PRK15462 225 ALITVLFWKEWSVYALIVATIIGLGVLAKIYRKA-ENQKQRKELGLIVTLTFFSMLFWAFAQQGGSSISLYIDRFVNRDM 303 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccchh
Confidence 000 0000 000000 0 0000 00000 111112222222111 1111112122222222222222
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCC--c-----hHHHHhhHHHHHHHHHHHHHhhcccCccccccccccc
Q psy13784 212 SGFHLLNPYFITVIGGLIIFASVISISFILPHTGV--K-----PLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFN 284 (388)
Q Consensus 212 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~--~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (388)
.|+ ...+.+..+...+..++.+++..++-.|..| | .-...+.++.+++.+.+.+....... ....+.
T Consensus 304 ~g~-~ip~~~~qslNp~~ii~l~P~~a~lw~~l~~~~~~~s~~~Kfa~g~~~~g~~f~~l~~~~~~~~~-----~~~~s~ 377 (493)
T PRK15462 304 FGY-TVPTAMFQSINAFAVMLCGVFLAWVVKESVAGNRTVRIWGKFALGLGLMSAGFCILTLSARWSAM-----YGHSSL 377 (493)
T ss_pred cce-eeCHHHHHhHhHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCcCH
Confidence 133 2446677778777777777766655444422 1 12566777777777766543322211 001233
Q ss_pred hHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHH-HHHHHHHHHHhHHH
Q psy13784 285 LIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLA-YIFGFFAVKTWPTL 344 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~-~~g~~~~~~~~g~l 344 (388)
++.+.. .++....-....|+..++++++.|++.+|..+|+..... .+|+.++..+.+..
T Consensus 378 ~wl~~~-~~~~t~gEl~~sPvgls~~~~laP~~~~g~~mg~w~l~~~~~~~~~~g~~~~~~ 437 (493)
T PRK15462 378 PLMVLG-LAVMGFAELFIDPVAMSQITRIEIPGVTGVLTGIYMLLSGAIANYLAGVIADQT 437 (493)
T ss_pred HHHHHH-HHHHHHHHHHHChHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 333333 334444456677999999999999999999999986533 56666665555543
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.6e-16 Score=135.44 Aligned_cols=329 Identities=16% Similarity=0.133 Sum_probs=216.4
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh------cchh--HHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYS------LTIT--NLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLAT 72 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~------~~~~--~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~ 72 (388)
.||+|-|...+++..+.++|..+-..+ +.++ ....+..+.+.+.-........+..- |++++||..+..
T Consensus 103 ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v~~~f~~~l~~~Gq~iaa~Aq~Fim~lPskiA~~---WF~~~qra~A~~ 179 (480)
T KOG2563|consen 103 LDKFGLRTALLLGTVLNGIGAWIRLISSLPFVPPLFRRPLTHTGQSIAAAAQPFILGLPSKIAAV---WFPPDQRAIATV 179 (480)
T ss_pred hcccchHHHHHHHHHHHHHHHHHhhhccCccccccchhhhhHHhHHHHHHhhhHhhccccHHHHh---hCCcchhhhhhh
Confidence 499999999999999999999988777 3344 66788888888877777666666667 999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHH----------hHHH--HHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhc
Q psy13784 73 WATTARAFGLLQVYFMGSLL----------RYRK--VAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLR 140 (388)
Q Consensus 73 ~~~~~~~~G~~~~~~~~~~~----------~w~~--~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~ 140 (388)
+-..+..+|.+++.++...+ .|.. .|+..+.+..+.+++..+..+|.|+...+..+ .
T Consensus 180 ~~v~~n~LGvavg~llppilV~~~~~~~~~~~~~~~~f~~~~~l~~l~l~l~~~~~~~~P~tPps~s~-----~------ 248 (480)
T KOG2563|consen 180 LGVMGNPLGVAVGFLLPPILVPSSKDSEDNSWLFFTLFLGVECLAALLLALVLFVFTKKPPTPPSASQ-----A------ 248 (480)
T ss_pred HHHhcchHHHHHHhhccceecCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCchhH-----h------
Confidence 99999999999998888777 5655 46655666555555555555665532111000 0
Q ss_pred CCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHH
Q psy13784 141 LGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPY 220 (388)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~ 220 (388)
.+++..-.++.++.++++.+... ...+......++...+.+...+...|++...+|
T Consensus 249 -------------------~~~~~~f~~si~~~~~n~~F~il-----~~~ygi~~g~F~~l~~~l~~~l~~sgY~~~~aG 304 (480)
T KOG2563|consen 249 -------------------ALQDASFPKSIKSCFKNRQFIIL-----AICYGIGLGLFNSLSTLLNLALCPSGYEGVFAG 304 (480)
T ss_pred -------------------hhhcCcHHHHHHHHHcCccHHHH-----HHHHhhhHHHHHHHHHHhhhccccccCCccccc
Confidence 00011234567788887764422 122222233344444444433444488778999
Q ss_pred HHHHHHHHHHHHHHHhhheeecccCCchH-HHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHH
Q psy13784 221 FITVIGGLIIFASVISISFILPHTGVKPL-SAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASS 299 (388)
Q Consensus 221 ~~~~~~~~~~~~~~~~~g~l~d~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
.......+++++++.+.|.+.||.+.-+. .........++.+.+...... ....+.+...+...+.+.
T Consensus 305 ~ig~l~iv~Gmlga~~~gii~Dktk~fk~~~~v~~~~~~v~~~~l~~~t~~-----------~~~~viv~~t~~~~g~~~ 373 (480)
T KOG2563|consen 305 YIGALMIVAGMLGALASGIIADKTKKFKLTTLVLYLFALVGTLMLLTCTLF-----------LGDSVIVFTTCGLLGFFG 373 (480)
T ss_pred hhHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhcc-----------CCceEehhhhHHHHHHhh
Confidence 99999999999999999999999876443 333333333432222111111 111223333445556666
Q ss_pred hccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc----cch-hhHHHHHHHHHHHHhheeccCC
Q psy13784 300 VGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG----NGI-FFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 300 ~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g----~~~-~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
.+..|+..-+..|..-|...++..|+.+..+++.+.+-..+.+...+..+ ..+ -+.....+.+..++..++.++.
T Consensus 374 ~~~~Pig~ElgvE~TyPv~E~tSsGll~~~gq~f~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~lva~~r~~y 453 (480)
T KOG2563|consen 374 TGYLPIGFELGVETTYPVAEGTSSGLLNLSGQIFGVILVFIMGILAEDLGPPGNTFPANIFLTVSALLGAILVAFFRPDY 453 (480)
T ss_pred cCCCCcceeeeeeeccccCCcccceeEEeehhHHHHHHHHHHHHHhhccCCCCCCccchhHhHHHHHHHHHHHhhhhhhH
Confidence 77789988898998777778899999999999999999998888887666 333 3344444444555454544444
Q ss_pred CCCC
Q psy13784 375 KGKS 378 (388)
Q Consensus 375 ~~~~ 378 (388)
++++
T Consensus 454 ~R~~ 457 (480)
T KOG2563|consen 454 RRLR 457 (480)
T ss_pred HhHh
Confidence 4333
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=99.60 E-value=6.6e-12 Score=108.33 Aligned_cols=297 Identities=12% Similarity=0.013 Sum_probs=187.5
Q ss_pred CCCCC-----chhHH-HHHHHHHHHHHHHHHhh-----c-------chh----HHHHHHHHHhhhccccccchhhhhccc
Q psy13784 1 MDKLG-----RKPAI-ILIGIVGIIGWLLITYS-----L-------TIT----NLFIGRFLTGVSEGLSASPATIYIAES 58 (388)
Q Consensus 1 sDr~G-----rr~~~-~~~~~~~~~~~~~~~~~-----~-------~~~----~~~~~r~l~G~g~g~~~~~~~~~i~~~ 58 (388)
||+.+ ||..+ ..|..+...+..+.+++ . +.+ ...+...+.|+|.+...+...+++.|
T Consensus 38 SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~~~~~~~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D- 116 (403)
T PF03209_consen 38 SDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQQSSGPFWLGLALAALAFLLYGLGVHASGTSFLALLAD- 116 (403)
T ss_pred cccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHh-
Confidence 68887 77665 45666666666655544 2 222 23445677899999999999999999
Q ss_pred ccccCchhhhHHHHHHHHHHHHHHHHHHHHHhHH-----hHHH--HHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhh
Q psy13784 59 IMVQNTKLRGSLATWATTARAFGLLQVYFMGSLL-----RYRK--VAAMAAIFSALGTILITFIIPESPAWLNSKGRRGD 131 (388)
Q Consensus 59 ~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-----~w~~--~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~ 131 (388)
..|+++|+++.++...+.-+|.+++..+.+.+ .-|. .+...+++.+...++..+ =.|.++. +.
T Consensus 117 --~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s~~rL~~v~~~~a~i~~~l~~ia~w-g~E~r~~-------~~ 186 (403)
T PF03209_consen 117 --LAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFSPERLIQVIQGVALIALLLNLIALW-GQEPRRS-------RR 186 (403)
T ss_pred --cCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHHHH-hcccCCc-------cc
Confidence 99999999999999999999999999998877 2222 222233333333333333 2232110 00
Q ss_pred HHHHHHHhcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHH-HH
Q psy13784 132 AEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDF-VR 210 (388)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 210 (388)
.+..++++..-...+.+...+|+.++.+...+..... ++.--..+-.| -+
T Consensus 187 ------------------------~~~~~~~~~~f~~a~~~~~~~~~a~~f~~fl~l~t~a-----~~~QD~iLEPygg~ 237 (403)
T PF03209_consen 187 ------------------------AAAAERPRPPFREAWRQVWASPQARRFFVFLFLGTLA-----FFMQDVILEPYGGE 237 (403)
T ss_pred ------------------------ccCCCCCCccHHHHHHHHHhCCChhHHHHHHHHHHHH-----HHhhHHHcCCchhH
Confidence 0000111122234556666666555433332222111 11111111112 23
Q ss_pred HcCCCCCcHHHHHHHHHHHHHHHHHhhheeec-ccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHH
Q psy13784 211 SSGFHLLNPYFITVIGGLIIFASVISISFILP-HTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLA 289 (388)
Q Consensus 211 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (388)
-+|++..+...++...+.+.+++....+++.. |.++++....++....++..++.+.... .+.+....
T Consensus 238 Vfgmsv~eTT~Lta~~~~G~L~G~~~~g~~l~~~~~~~~~a~~G~~~~~~~f~lii~a~~~-----------~~~~~~~~ 306 (403)
T PF03209_consen 238 VFGMSVGETTRLTAFWGGGTLLGMLLAGFLLSRRLGKKRTAALGCLLGALAFALIILAGPL-----------GSPWLFRP 306 (403)
T ss_pred HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHHHHhc-----------ccchHHHH
Confidence 45999999999999999999999999987765 6777777778887777777766543222 23344444
Q ss_pred HHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 290 ALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
...+++.+.+... ....+.+.+..+++..|..+|.....+.+...++..+.|.+.|...
T Consensus 307 ~~~l~G~g~G~f~-vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~ 365 (403)
T PF03209_consen 307 GVFLLGLGNGLFT-VGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVR 365 (403)
T ss_pred HHHHHHHhhhHHH-HHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444433322 3334677888888889999999999999999999999999887643
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >TIGR02332 HpaX 4-hydroxyphenylacetate permease | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.6e-13 Score=123.08 Aligned_cols=178 Identities=15% Similarity=0.053 Sum_probs=133.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHH
Q psy13784 183 LIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSML 262 (388)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~ 262 (388)
.+....+.+..+...........|.+.+++|++..+.++..+...++..+++++.|++.||+|||+.+..+..+..++.+
T Consensus 9 ~~~~~~~~~~~~~~d~~~~~~~~~~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~G~r~~~~~~~~~~~~~~~ 88 (412)
T TIGR02332 9 LIIFLFILFIFSFLDRINIGFAGLTMGKDLGLSATMFGLAATLFYAAYVICGIPSNIMLAIIGARRWIAGIMVLWGIAST 88 (412)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHhhHhhcCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhChHHHHHHHHHHHHHHHH
Confidence 33334444444455456666777777788899999999999999999999999999999999999999888888888887
Q ss_pred HHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhH
Q psy13784 263 VIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWP 342 (388)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g 342 (388)
...+. .+...+....+..+.......+....++.|.+|+++|+++.++.+....+|..+++.+.+
T Consensus 89 ~~~~~---------------~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~ 153 (412)
T TIGR02332 89 ATMFA---------------TGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSG 153 (412)
T ss_pred HHHHh---------------cCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77551 222233333344444444455666678899999999999999999999999999999999
Q ss_pred HHHhh------cc-cchhhHHHHHHHHHHHHhheeccCCC
Q psy13784 343 TLHLA------LG-NGIFFFYGLVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 343 ~l~~~------~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (388)
++.+. .| ...+.+.++..++..++.++++||++
T Consensus 154 ~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~~~p 193 (412)
T TIGR02332 154 YILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLDDSP 193 (412)
T ss_pred HHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 88752 46 56666666666666555666677765
|
This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially. |
| >TIGR01299 synapt_SV2 synaptic vesicle protein SV2 | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-13 Score=129.61 Aligned_cols=161 Identities=13% Similarity=0.008 Sum_probs=118.1
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccc
Q psy13784 199 NVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNF 278 (388)
Q Consensus 199 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (388)
..+....|.+.++.|++..+.+++.+...++.+++.++.|+++||+|||+.+..+.++..++.++..+.
T Consensus 184 ~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~lil~~i~~ll~afa----------- 252 (742)
T TIGR01299 184 FVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICLSVNGFFAFFSSFV----------- 252 (742)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-----------
Confidence 445566777777889988899999999999999999999999999999999998887777777666541
Q ss_pred cccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc---------
Q psy13784 279 EWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG--------- 349 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--------- 349 (388)
.+.+..++ ..++.+....+..+...+++.|.+|++.|+...++..+...+|.++++.+...+....|
T Consensus 253 ---~s~~~llv-~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~ 328 (742)
T TIGR01299 253 ---QGYGFFLF-CRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAY 328 (742)
T ss_pred ---hhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhcccccc
Confidence 12223333 33334444444457888999999999999999999999999999999988777665432
Q ss_pred ----cchhhHHHHHHHHHHHHhheeccCC
Q psy13784 350 ----NGIFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 350 ----~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
|..++.+.++..+..++..+++||+
T Consensus 329 ~~~gWR~l~~i~~lp~ll~ll~~~~lPES 357 (742)
T TIGR01299 329 QFHSWRVFVIVCAFPCVFAIGALTFMPES 357 (742)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 2233344444444444555667876
|
This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices. |
| >PRK03545 putative arabinose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.5e-13 Score=122.48 Aligned_cols=159 Identities=13% Similarity=0.069 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccc
Q psy13784 201 ILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEW 280 (388)
Q Consensus 201 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (388)
.....|.+.+++|.|+.+.++......++..++.+..|.+.||+|||+.+..+.....++.+.....
T Consensus 28 ~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------- 94 (390)
T PRK03545 28 PVGLLSDIAQSFHMQTAQVGLMLTIYAWVVALMSLPLMLLTSNVERRKLLIGLFVLFIASHVLSALA------------- 94 (390)
T ss_pred HHcchHHHHhHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHh-------------
Confidence 3445688888899999999999999999999999999999999999999999988888887776551
Q ss_pred cccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHH
Q psy13784 281 GFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLV 359 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~ 359 (388)
++.+. +....+..+.......+...++..|.+|+++|++++|+......+|..++|.+.+.+.+..| ...+++.+++
T Consensus 95 -~~~~~-l~~~r~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~ 172 (390)
T PRK03545 95 -WNFTV-LLISRIGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGG 172 (390)
T ss_pred -ccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHH
Confidence 12233 23333333333333446666888999999999999999999999999999999999988888 7777777777
Q ss_pred HHHHHHHhheeccCC
Q psy13784 360 AAIGTAHVLAYLPET 374 (388)
Q Consensus 360 ~~~~~~~~~~~~~~~ 374 (388)
.++..+......|+.
T Consensus 173 ~~l~~~~~~~~~~~~ 187 (390)
T PRK03545 173 ALITLLLLIKLLPLL 187 (390)
T ss_pred HHHHHHHHHHhCCCC
Confidence 766665555555654
|
|
| >TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=123.56 Aligned_cols=166 Identities=16% Similarity=0.044 Sum_probs=126.2
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcc
Q psy13784 196 SAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPI 275 (388)
Q Consensus 196 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (388)
.+........|.+.++.|.++.+.+.......++..++.++.|++.||+|||+.+..+..+..++.+.....
T Consensus 19 ~~~~~~~~~~p~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-------- 90 (385)
T TIGR00710 19 LGIDMYLPAFPEIAADLSTPASIVQMTLTLYLLGFAAGQLLWGPLSDRYGRRPVLLLGLFIFALSSLGLALS-------- 90 (385)
T ss_pred HHHHHhcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH--------
Confidence 334555556777788889999999999999999999999999999999999999998888887777766541
Q ss_pred ccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhh
Q psy13784 276 VNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFF 354 (388)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~ 354 (388)
++.+. .....+..+.......+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ ...++
T Consensus 91 ------~~~~~-~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~ 163 (385)
T TIGR00710 91 ------NNIET-LLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFA 163 (385)
T ss_pred ------ccHHH-HHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 12222 22223333333333345666889999999999999999999999999999999999988888 66677
Q ss_pred HHHHHHHHHHHHhheeccCCCC
Q psy13784 355 FYGLVAAIGTAHVLAYLPETKG 376 (388)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~ 376 (388)
+.+++.++..+......||+++
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~ 185 (385)
T TIGR00710 164 FLSLAGILLSALIFFILPETLP 185 (385)
T ss_pred HHHHHHHHHHHHHHHhCCCCCC
Confidence 7677666666655555666543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033. |
| >TIGR00895 2A0115 benzoate transport | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=124.41 Aligned_cols=170 Identities=15% Similarity=0.100 Sum_probs=127.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhh
Q psy13784 190 FLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLL 269 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 269 (388)
..+...........+.|.+.++.|.+..+.+.......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~-- 102 (398)
T TIGR00895 25 IMLMDGYDLAAMGFAAPAISAEWGLDPVQLGFLFSAGLIGMAFGALFFGPLADRIGRKRVLLWSILLFSVFTLLCALA-- 102 (398)
T ss_pred HHHHHHHHHHHHHhhHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHc--
Confidence 333333334556677888888889988899999999999999999999999999999999988888777777666541
Q ss_pred cccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 270 FEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
.+.+... ...+..+.......+...++..|.+|++.|+++.++.+....+|..+++.+.+.+.+..+
T Consensus 103 ------------~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g 169 (398)
T TIGR00895 103 ------------TNVTQLL-ILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFG 169 (398)
T ss_pred ------------cchHHHH-HHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhccc
Confidence 1222222 233333333334456777899999999999999999999999999999999999998888
Q ss_pred -cchhhHHHHHHHHHHHHhheeccCC
Q psy13784 350 -NGIFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 350 -~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
...+.+.+.+..+..++.....||+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (398)
T TIGR00895 170 WRSLFYVGGIAPLLLLLLLMRFLPES 195 (398)
T ss_pred ceeehhhhhhHHHHHHHHHHHhCCCC
Confidence 6666666556655555555556654
|
|
| >PRK11663 regulatory protein UhpC; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.6e-13 Score=123.08 Aligned_cols=170 Identities=10% Similarity=0.001 Sum_probs=126.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHh
Q psy13784 189 FFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYL 268 (388)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 268 (388)
+..+..+.....+..+.|.+.++.|+|..+.+.......++..+++++.|++.||+|||+.+..+.....++.++....
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~- 108 (434)
T PRK11663 30 LGYALFYFTRKSFNAAMPEMLADLGLSRSDIGLLATLFYITYGVSKFVSGIVSDRSNARYFMGIGLIATGIINILFGFS- 108 (434)
T ss_pred HHHHHHHHhhhhHHHhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhHHHhhcCCchhHHHHHHHHHHHHHHHHHH-
Confidence 3333333334456778888888999999999999999999999999999999999999999998888888887766551
Q ss_pred hcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy13784 269 LFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL 348 (388)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 348 (388)
.+.+.......+...+.+ ...+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..
T Consensus 109 -------------~~~~~l~~~~~l~g~~~g-~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 174 (434)
T PRK11663 109 -------------SSLWAFALLWVLNAFFQG-WGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHY 174 (434)
T ss_pred -------------hHHHHHHHHHHHHHHHHH-ccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 122222222222223333 334666688999999999999999999999999999999999999988
Q ss_pred c-cchhhHHHHHHHHHHHHhheeccC
Q psy13784 349 G-NGIFFFYGLVAAIGTAHVLAYLPE 373 (388)
Q Consensus 349 g-~~~~~~~~~~~~~~~~~~~~~~~~ 373 (388)
| ...+.+.+++.++..++..+.++|
T Consensus 175 gw~~~f~~~~i~~~~~~~~~~~~~~~ 200 (434)
T PRK11663 175 GWRYGMMIAGIIAIVVGLFLCWRLRD 200 (434)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 8 666666666655544444444444
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.7e-13 Score=121.03 Aligned_cols=300 Identities=16% Similarity=0.148 Sum_probs=197.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhh--ccccccchhhhhcccccccCchhhhHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVS--EGLSASPATIYIAESIMVQNTKLRGSLATWATTAR 78 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g--~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~ 78 (388)
+||+|||..+.+..+...+..+...+.. +++.+ +.|+. .+.......++++| ....++|....++....+
T Consensus 86 SD~~grk~~L~~~~~~~~l~~~~~~~~~--~~~~~---~~~l~g~~~~~~s~~~a~vad---is~~~~R~~~~gll~~~~ 157 (463)
T KOG2816|consen 86 SDRYGRKVVLLLPLFGTILPALCLLFQG--YWFFL---LLGLSGGFSAIFSVGFAYVAD---ISSEEERSSSIGLLSGTF 157 (463)
T ss_pred hhhhhhhhhHHHHHHHHHHhHHHHHHHH--HHHhh---hcccccchhhhhhhhhhheee---ccchhHHHHHHHHHHHHH
Confidence 6999999999999999988888877766 33333 44432 34455667888999 999999999999999999
Q ss_pred HHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccc
Q psy13784 79 AFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRG 154 (388)
Q Consensus 79 ~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
..+..++|.+++.+ |.-.+|.+..+..++..+....++||+-. ++++.+ . ...
T Consensus 158 ~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~---~~~~~~---------~-----------~~~ 214 (463)
T KOG2816|consen 158 GAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQ---EKERSD---------A-----------TLR 214 (463)
T ss_pred HHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccC---cccccc---------c-----------ccc
Confidence 99999999999988 77889999999999998988888999842 111110 0 000
Q ss_pred cccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHH
Q psy13784 155 DAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFAS 233 (388)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~ 233 (388)
+....+..............+ .+..+..+..+...............-..+.+++ ..|++..+.+......+....++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~-~~~~r~~l~l~l~~~~~~~~~~~~~~~~~~~yl~~~f~w~~~~~s~~~~~~~~~~~i~ 293 (463)
T KOG2816|consen 215 ELTPGSLDSSHVADAFQSLTK-VGPDRLLLLLLLVAFLSSLPEAGGASDVLLLYLKAKFGWNKKEFSDLLSLVSILGIIS 293 (463)
T ss_pred ccCCCcccchhhhhhhhhhcc-cCCCccchHHHHHHHHHHHHHhcCceeEEEEEEeeecCcCHHHHHHHHHHHHHHHHHH
Confidence 000000000011111111111 1111211222222221111100001101122333 45888899998889999999999
Q ss_pred HHhhh-eeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhcc
Q psy13784 234 VISIS-FILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGE 312 (388)
Q Consensus 234 ~~~~g-~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (388)
.++.. .+...++.|+....+...-.+.....++. ...|......... .......|...+..+.
T Consensus 294 ~l~~~~~l~~~l~~~~~i~lGl~~~~~~~~~~af~--------------~~~w~~~~~~v~~--~~~~~~~pa~~s~~s~ 357 (463)
T KOG2816|consen 294 QLLLLPLLSSILGEKRLISLGLLSEFLQLLLFAFA--------------TETWMMFAAGVVV--ALAGIVFPAIRAFASI 357 (463)
T ss_pred HHHHHHHHHHHHhhhhHhhHHHHHHHHHHHHHHHh--------------ccchhhhHHHHHH--HhhcchhHHHHhHHHh
Confidence 98887 67778888888888888888888887762 2334433333222 2233344777789999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy13784 313 IFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL 348 (388)
Q Consensus 313 ~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 348 (388)
..+++++|.+.++...+..+.+.++|.+.+.+...+
T Consensus 358 ~v~~~e~g~v~~~is~i~~l~~~~~~~~~~~i~~~t 393 (463)
T KOG2816|consen 358 LVSPEEQGKVFGIISGIEGLSGVVSPALYGNIFALT 393 (463)
T ss_pred hcccccccchhhHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 999999999999999999999999999999886543
|
|
| >PRK10054 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.1e-13 Score=121.07 Aligned_cols=165 Identities=11% Similarity=0.004 Sum_probs=121.2
Q ss_pred HhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhccc
Q psy13784 194 QFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEK 272 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (388)
...+......+.|.+++ +.|++..+.+.......+...+++++.|+++||+|||+.+..+.....++.+.+.+.
T Consensus 19 ~~~g~~~~~~~l~~~l~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~----- 93 (395)
T PRK10054 19 LTIGRGATLPFMTIYLSRQYSLSVDLIGYAMTIALTIGVVFSLGFGILADKFDKKRYMLLAITAFASGFIAIPLV----- 93 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH-----
Confidence 34445666677777775 679999999999999999999999999999999999999888887777776665441
Q ss_pred CccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cc
Q psy13784 273 APIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NG 351 (388)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~ 351 (388)
++.+..+....+..... ....+....+..|..|+++|+++.|+.+...++|..++|.+.+.+.+ .+ ..
T Consensus 94 ---------~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~-~g~~~ 162 (395)
T PRK10054 94 ---------NNVTLVVLFFALINCAY-SVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVM-QSINL 162 (395)
T ss_pred ---------hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCc
Confidence 12222222222222222 23346667888999999999999999999999999999999998775 56 66
Q ss_pred hhhHHHHHHHHHHHHhheeccCC
Q psy13784 352 IFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
.+...+++.++..++.....||.
T Consensus 163 ~f~~~~~~~~i~~i~~~~~~~~~ 185 (395)
T PRK10054 163 PFWLAAICSAFPLVFIQIWVQRS 185 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc
Confidence 77777666666555444444443
|
|
| >PRK10213 nepI ribonucleoside transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-13 Score=120.82 Aligned_cols=161 Identities=12% Similarity=0.050 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccccc
Q psy13784 200 VILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFE 279 (388)
Q Consensus 200 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (388)
......|.+.++.|.++.+.+.......++..+++++.|++.||+|||+.+..+..+..++.+.....
T Consensus 38 ~~~~~l~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~grr~~~~~~~~~~~~~~~~~~~~------------ 105 (394)
T PRK10213 38 LPVSLLTPMAQDLGISEGVAGQSVTVTAFVAMFASLFITQTIQATDRRYVVILFAVLLTLSCLLVSFA------------ 105 (394)
T ss_pred HHHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHH------------
Confidence 44445777778889999999999999999999999999999999999999999998888877766541
Q ss_pred ccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHH
Q psy13784 280 WGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGL 358 (388)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~ 358 (388)
++.+..+. ..+..+.......+....++.|.+|+++|+.+.++.....+++..++|.+.+.+.+..+ ...+++.+.
T Consensus 106 --~~~~~l~~-~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~ 182 (394)
T PRK10213 106 --NSFSLLLI-GRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAV 182 (394)
T ss_pred --ChHHHHHH-HHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 12233333 33333333333456777889999999999999999999999999999999999999888 666766666
Q ss_pred HHHHHHHHhheeccCCC
Q psy13784 359 VAAIGTAHVLAYLPETK 375 (388)
Q Consensus 359 ~~~~~~~~~~~~~~~~~ 375 (388)
+.++..+......||++
T Consensus 183 l~~~~~l~~~~~~p~~~ 199 (394)
T PRK10213 183 MGVLCIFWIIKSLPSLP 199 (394)
T ss_pred HHHHHHHHHHHHCCCCC
Confidence 66555544444456543
|
|
| >PRK10473 multidrug efflux system protein MdtL; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.9e-13 Score=121.43 Aligned_cols=177 Identities=11% Similarity=0.074 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHH
Q psy13784 184 IIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLV 263 (388)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 263 (388)
+............+........|.+.++.|.+..+.+.......++..++.++.|+++||+|||+.+..+.....++...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~i~~~~ 84 (392)
T PRK10473 5 LLCSFALVLLYPAGIDMYLVGLPRIAADLNASEAQLHIAFSVYLAGMAAAMLFAGKIADRSGRKPVAIPGAALFIIASLL 84 (392)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHhHHHHHhCChHHHHHHHHHHHHHHHH
Confidence 34444555555555667777888888888998888999999999999999999999999999999999888887777776
Q ss_pred HHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy13784 264 IGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPT 343 (388)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~ 343 (388)
+... ++.+..... .+..+.......+..+.+..|.+|+++|+++.++.+....++..++|.+.+.
T Consensus 85 ~~~~--------------~~~~~~~~~-~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~ 149 (392)
T PRK10473 85 CSLA--------------ETSSLFLAG-RFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHL 149 (392)
T ss_pred HHHh--------------CcHHHHHHH-HHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6541 111222222 2222222223335566888999999999999999999999999999999988
Q ss_pred HHhhcc-cchhhHHHHHHHHHHHHhheeccCCC
Q psy13784 344 LHLALG-NGIFFFYGLVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 344 l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (388)
+.+..+ ...+++.+.+.++..++.....||++
T Consensus 150 l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~ 182 (392)
T PRK10473 150 IMLKFPWQSLFYTMAAMGILVLLLSLFILKETR 182 (392)
T ss_pred HHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 888778 56677777776666665555566654
|
|
| >TIGR00891 2A0112 putative sialic acid transporter | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-12 Score=118.43 Aligned_cols=177 Identities=11% Similarity=0.068 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHH
Q psy13784 184 IIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLV 263 (388)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~ 263 (388)
+....+................|.+.++.|.+..+.+.......++..++.++.|++.||+|||+.+..+..+..++.+.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~ 93 (405)
T TIGR00891 14 FSAAWLGWLLDAFDFFLVALVLAEVAGEFGLTTVDAASLISAALISRWFGALMFGLWGDRYGRRLPMVTSIVLFSAGTLA 93 (405)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 33343444444445566677778887888999999999999999999999999999999999999999888877777776
Q ss_pred HHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy13784 264 IGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPT 343 (388)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~ 343 (388)
.... .+...+....+..+.......+....+..|.+|+++|+.+.++.+....+|..+++.+.+.
T Consensus 94 ~~~~---------------~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~ 158 (405)
T TIGR00891 94 CGFA---------------PGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSL 158 (405)
T ss_pred HHHh---------------ccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6541 1222223333333333344446667889999999999999999999999999999999999
Q ss_pred HHhhcc--cchhhHHHHHHHHHHHHhheeccCCC
Q psy13784 344 LHLALG--NGIFFFYGLVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 344 l~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (388)
+.+..+ +...+....+..+..++.....||++
T Consensus 159 l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~ 192 (405)
T TIGR00891 159 VVPVWGDGWRALFFISILPIIFALWLRKNIPEAE 192 (405)
T ss_pred HHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCCh
Confidence 887765 33333333333333333444556643
|
|
| >COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.3e-13 Score=114.62 Aligned_cols=169 Identities=12% Similarity=0.018 Sum_probs=148.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHh
Q psy13784 189 FFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYL 268 (388)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 268 (388)
+..+......+.....+|.+-+++|.|..+++...+.+.++..+++++...+.||+.||+++.....+..++.++..+
T Consensus 20 ~~~F~igttEfv~~gLLp~iA~dl~vs~~~aG~lis~yAl~~ai~ap~l~~lt~r~~Rr~lLl~~l~lFi~~n~l~al-- 97 (394)
T COG2814 20 LAAFAIGTTEFVPVGLLPPIAADLGVSEGAAGQLITAYALGVALGAPLLALLTGRLERRRLLLGLLALFIVSNLLSAL-- 97 (394)
T ss_pred HHHHHHHhHHHHHHhchHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHHHH--
Confidence 333334444677888899999999999999999999999999999999999999999999999999999999999877
Q ss_pred hcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy13784 269 LFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL 348 (388)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 348 (388)
..++...+..-+..+.....+.++......++.|+++|+++.++..+...+...+|.++..++-|.+
T Consensus 98 -------------Ap~f~~Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~ 164 (394)
T COG2814 98 -------------APSFAVLLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLF 164 (394)
T ss_pred -------------hccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHh
Confidence 3445556666666666666777888899999999999999999999999999999999999999999
Q ss_pred c-cchhhHHHHHHHHHHHHhheecc
Q psy13784 349 G-NGIFFFYGLVAAIGTAHVLAYLP 372 (388)
Q Consensus 349 g-~~~~~~~~~~~~~~~~~~~~~~~ 372 (388)
| ...|+..+.+.++..+..+..+|
T Consensus 165 GWR~~F~~ia~l~ll~~~~~~~~lP 189 (394)
T COG2814 165 GWRATFLAIAVLALLALLLLWKLLP 189 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9 88999999999999988888888
|
|
| >PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.2e-13 Score=121.24 Aligned_cols=166 Identities=16% Similarity=0.072 Sum_probs=122.3
Q ss_pred HhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccC
Q psy13784 194 QFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKA 273 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (388)
............|.+.++.|.++.+.+.......++..++.++.|++.||+|||+.+..+..+..++.+.....
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------ 100 (406)
T PRK11551 27 EGLDLQSAGVAAPRMAQEFGLDVAQMGWAFSAGILGLLPGALLGGRLADRIGRKRILIVSVALFGLFSLATAQA------ 100 (406)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh------
Confidence 33334556667788888889999999999999999999999999999999999999998887777766655441
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cch
Q psy13784 274 PIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGI 352 (388)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~ 352 (388)
.+.+...+. .+..+.......+....++.|.+|+++|++++++.+....+|..+++.+.+.+.+..+ ...
T Consensus 101 --------~~~~~~~~~-~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 171 (406)
T PRK11551 101 --------WDFPSLLVA-RLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHI 171 (406)
T ss_pred --------ccHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHH
Confidence 122333333 3333333333346667889999999999999999999999999999999888777777 556
Q ss_pred hhHHHHHHHHHHHHhheeccCC
Q psy13784 353 FFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
+++.+.+.++..++....+||+
T Consensus 172 ~~~~~~~~~~~~~~~~~~l~~~ 193 (406)
T PRK11551 172 FYVGGVGPLLLVPLLMRWLPES 193 (406)
T ss_pred HHHHHHHHHHHHHHHHHhCCCC
Confidence 6666655555554444555664
|
|
| >TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.7e-13 Score=126.15 Aligned_cols=171 Identities=15% Similarity=0.106 Sum_probs=131.7
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhh
Q psy13784 190 FLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLL 269 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 269 (388)
..+.............|.+.++.|.+..+.++......++..++.++.|++.||+|||+.+..+..+..++.++...
T Consensus 10 ~~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~--- 86 (485)
T TIGR00711 10 GTFMAVLDSTIVNVAIPTIAGDLGSSLSQVQWVITSYMLANAISIPLTGWLAKRFGTRRLFLISTFAFTLGSLLCGV--- 86 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHhC---
Confidence 33334444566777888888899999999999999999999999999999999999999999998888888777654
Q ss_pred cccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 270 FEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
..+...+....+..+.......+....++.|.+|+++|+++.++......+|..++|.+.+.+.+..+
T Consensus 87 ------------~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 154 (485)
T TIGR00711 87 ------------APNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYH 154 (485)
T ss_pred ------------cCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcC
Confidence 12233333334444444444556777899999999999999999999999999999999999999888
Q ss_pred -cchhhHHHHHHHHHHHHhheeccCCC
Q psy13784 350 -NGIFFFYGLVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 350 -~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (388)
...+++.+.+.++..++..+..||++
T Consensus 155 w~~~f~~~~~~~~~~~~~~~~~~~~~~ 181 (485)
T TIGR00711 155 WRWIFLINVPIGIIVVVVAFFILPRDK 181 (485)
T ss_pred ceehhhhhhHHHHHHHHHHHHHcCCcc
Confidence 66677666666665555555556543
|
This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli. |
| >TIGR00893 2A0114 d-galactonate transporter | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.1e-13 Score=120.24 Aligned_cols=162 Identities=12% Similarity=0.070 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccc
Q psy13784 199 NVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNF 278 (388)
Q Consensus 199 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (388)
..+....|.+.++.|.++.+.+.......++..++.++.|++.||+|||+.+..+.....++...+...
T Consensus 11 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~----------- 79 (399)
T TIGR00893 11 ANLSFAAPMLQEDLGLSAAQYGYVFSAFSWGYVVGQFPGGWLLDRFGARKTLAVFIVIWGVFTGLQAFA----------- 79 (399)
T ss_pred HhhhHhHHHHHHhhCCChhhHHHHHHHHHHHHHHHHHhHHHHHHhcCcceeeHHHHHHHHHHHHHHHHH-----------
Confidence 455666777777889999999999999999999999999999999999999988888887777776551
Q ss_pred cccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHH
Q psy13784 279 EWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYG 357 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~ 357 (388)
.+...+....+..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+ ...+...+
T Consensus 80 ----~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 155 (399)
T TIGR00893 80 ----GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEG 155 (399)
T ss_pred ----cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHH
Confidence 1222333333333333444557777899999999999999999999999999999999999888888 66777767
Q ss_pred HHHHHHHHHhheeccCCC
Q psy13784 358 LVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~ 375 (388)
++.++..+......+|++
T Consensus 156 ~~~~~~~~~~~~~~~~~~ 173 (399)
T TIGR00893 156 VLGIIWGVLWLKFIPDPP 173 (399)
T ss_pred HHHHHHHHHhhheecCCC
Confidence 766666665555555543
|
|
| >PRK09874 drug efflux system protein MdtG; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2e-12 Score=117.46 Aligned_cols=165 Identities=16% Similarity=0.121 Sum_probs=120.1
Q ss_pred HhhhHHHHHHHHHHHHHHcCCCCCcH-----HHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHh
Q psy13784 194 QFSAVNVILAYMTDFVRSSGFHLLNP-----YFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYL 268 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~g~s~~~~-----~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 268 (388)
...+......+.|.+.++.|.+..+. +.......+...++.++.|+++||+|||+.+..+.....++.+.+...
T Consensus 26 ~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~- 104 (408)
T PRK09874 26 TGAAFSLVMPFLPLYVEQLGVTGHSALNMWSGLVFSITFLFSAIASPFWGGLADRKGRKIMLLRSALGMGIVMVLMGLA- 104 (408)
T ss_pred HHHHHHHhhhhHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhCcHHHHHHHHHHHHHHHHHHHHH-
Confidence 33445566778888888888875553 677788888999999999999999999999988887777776665431
Q ss_pred hcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy13784 269 LFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL 348 (388)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 348 (388)
.+.+...+... ..+.. .+..+.......|.+|+++|+.+.++.+....+|..++|.+.+.+.+..
T Consensus 105 -------------~~~~~~~~~~~-~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 169 (408)
T PRK09874 105 -------------QNIWQFLILRA-LLGLL-GGFVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSY 169 (408)
T ss_pred -------------hhHHHHHHHHH-HHHHh-hhhHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 12222222222 22222 2334555677889999999999999999999999999999999998888
Q ss_pred c-cchhhHHHHHHHHHHHHhheeccCC
Q psy13784 349 G-NGIFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 349 g-~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
+ ...+++.+.+.++..+......+|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (408)
T PRK09874 170 GLRPVFFITASVLFLCFLVTLFCIREN 196 (408)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 8 6677777776666665555555543
|
|
| >PLN00028 nitrate transmembrane transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.6e-12 Score=118.64 Aligned_cols=163 Identities=15% Similarity=0.028 Sum_probs=112.7
Q ss_pred HHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhccc
Q psy13784 193 QQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEK 272 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (388)
...........+.|.+.+++|++..+.+.......++..++.++.|+++||+|||+.+..+.+...++.++....
T Consensus 47 ~~~~~~~~~~~~~~~l~~~~gls~~~~g~~~~~~~~~~~~~~~~~G~l~dr~G~r~~~~~~~~~~~~~~~~~~~~----- 121 (476)
T PLN00028 47 TCFVSTFAAAPLLPIIRDNLNLTKSDIGNAGIASVSGSIFSRLAMGPVCDLYGPRYGSAFLLMLTAPAVFCMSLV----- 121 (476)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHh-----
Confidence 333334556667778888899998888888888888999999999999999999999888877777776665541
Q ss_pred CccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHh----h-
Q psy13784 273 APIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHL----A- 347 (388)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~----~- 347 (388)
.+.+. +....+..+.......+ ...++.|.+|+++|+.++|+.+...++|..+++.+.+.+.+ .
T Consensus 122 ---------~s~~~-l~~~r~l~G~~~~~~~~-~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~ 190 (476)
T PLN00028 122 ---------SSATG-FIAVRFFIGFSLATFVS-CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAG 190 (476)
T ss_pred ---------cCHHH-HHHHHHHHHHHHHhhHH-HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 12222 22222223322222323 33568899999999999999998888888888777765533 1
Q ss_pred ----cc-cchhhHHHHHHHHHHHHhheec
Q psy13784 348 ----LG-NGIFFFYGLVAAIGTAHVLAYL 371 (388)
Q Consensus 348 ----~g-~~~~~~~~~~~~~~~~~~~~~~ 371 (388)
.| ...+++.+++.++..++.+++.
T Consensus 191 ~~~~~gWr~~f~i~g~l~l~~~l~~~~~~ 219 (476)
T PLN00028 191 APSFTAWRIAFFVPGLLHIIMGILVLTLG 219 (476)
T ss_pred CcchhhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 35 5666777776666555444433
|
|
| >PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-13 Score=118.95 Aligned_cols=161 Identities=16% Similarity=0.083 Sum_probs=124.0
Q ss_pred HHHHHHHHH-HHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccc
Q psy13784 198 VNVILAYMT-DFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIV 276 (388)
Q Consensus 198 ~~~~~~~~~-~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (388)
........| .+.++.|.+..+.++......++..++.++.|+++||+|||+.+..+..+..++.+...+ .
T Consensus 12 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~-~-------- 82 (352)
T PF07690_consen 12 FSIISPALPLYLAEELGLSPSQIGLLFSAFFLGSALFSPFAGYLSDRFGRRRVLIIGLLLFALGSLLLAF-A-------- 82 (352)
T ss_dssp HHHHHHHHH-HHHCCSTTTSHCHHHHHHHHHHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-H--------
T ss_pred HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeEeehhhhhhhHHHHhhh-h--------
Confidence 344556666 555677999999999999999999999999999999999999999998888888444432 1
Q ss_pred cccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhH
Q psy13784 277 NFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFF 355 (388)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~ 355 (388)
.+.+ ......+..+.......+....++.|.+|+++|++++++.+....+|..++|.+.+.+.+..+ ...+++
T Consensus 83 -----~~~~-~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~ 156 (352)
T PF07690_consen 83 -----SNFW-LLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLI 156 (352)
T ss_dssp -----CCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHH
T ss_pred -----hhHH-HHhhhccccccccccccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhcccccccccc
Confidence 1234 333434444444444557778999999999999999999999999999999999999888888 778888
Q ss_pred HHHHHHHHHHHhheeccC
Q psy13784 356 YGLVAAIGTAHVLAYLPE 373 (388)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~ 373 (388)
.+++.++..++...+.++
T Consensus 157 ~~~~~~~~~il~~~~~~~ 174 (352)
T PF07690_consen 157 SAILSLIAAILFILFLPE 174 (352)
T ss_dssp HHHHHHHHHHHHHCCC--
T ss_pred ccchhhhhhhhHhhhhhh
Confidence 888888877654444443
|
These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A. |
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-11 Score=113.35 Aligned_cols=295 Identities=13% Similarity=0.109 Sum_probs=186.0
Q ss_pred HHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHHHHHHHHHHHhHH-------------------
Q psy13784 32 NLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLL------------------- 92 (388)
Q Consensus 32 ~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~------------------- 92 (388)
.++++.++.|+|....++...+|+-| ...+++-...+|+......+|.++|.+++++.
T Consensus 239 lff~~q~l~GIG~Tpi~tlGisYiDD---nvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DP 315 (735)
T KOG3626|consen 239 LFFLGQLLLGIGATPIFTLGISYIDD---NVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDP 315 (735)
T ss_pred HHHHHHHHhhcCCCCCccCCCccccc---cccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCc
Confidence 57778899999999999999999999 89999999999999999999999999999987
Q ss_pred ----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccccccccccccccc
Q psy13784 93 ----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTT 168 (388)
Q Consensus 93 ----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (388)
-|..-|++.+.+.++..+..++ +|...+- ..+. ...++.+..+.++. ..++.....++-+.-..
T Consensus 316 rWIGAWWlGFLi~g~~~~~~a~p~f~-fPk~lp~---~~~~----~~~~~~~~~k~~~~----~~~~~~~~~~~ikdfp~ 383 (735)
T KOG3626|consen 316 RWIGAWWLGFLICGALLLFSAVPLFF-FPKELPK---SQKR----KRARDLHVLKTESG----GAKSDKTFGKKIKDFPK 383 (735)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHh-CcccCcc---cccc----chhhhhcccccccc----cccCCcchhhhHHHHHH
Confidence 4788888888888888887777 6654321 1110 00001111000000 00000000011122345
Q ss_pred hhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHH-HHHHHHHhhheeecccC-
Q psy13784 169 NIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGL-IIFASVISISFILPHTG- 245 (388)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g- 245 (388)
..+++++||.+. ...+........+..+.+|+|.|++ ++|.++..+..+....++ +..+|.+++|++.+|+.
T Consensus 384 s~~~ll~N~if~-----~~~l~~~~~~~~~~G~~tFlPKyLE~Qfg~sas~An~l~G~i~vp~~~~Gi~lGG~iikkfkl 458 (735)
T KOG3626|consen 384 SIKRLLSNPIFM-----LVVLASVIESLAITGYITFLPKYLETQFGISASLANILTGSIGVPAAAVGIFLGGLIIKKFKL 458 (735)
T ss_pred HHHHHhcCchHH-----HHHHHHHHHHHHHhhHHHhhHHHHHHHcCCCHHHHHHHhhhhhhhhhhhhhhccceeeeeecc
Confidence 667777777533 3333334455557888999999998 679988888877755554 45678889999999875
Q ss_pred -CchHHHHhhHHHHHHHHHHHHHhhcc--cC----------------cccc-------c---------------------
Q psy13784 246 -VKPLSAASGMGIALSMLVIGTYLLFE--KA----------------PIVN-------F--------------------- 278 (388)
Q Consensus 246 -~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----------------~~~~-------~--------------------- 278 (388)
.|....+..+...+.++........+ .. .+.+ .
T Consensus 459 ~~r~~a~~~~~~~~l~l~~~~~~~~igC~~~~~aG~~~~y~~~~~~~~~~~~~s~Cn~~C~C~~~~~~PVCg~~G~tY~S 538 (735)
T KOG3626|consen 459 SARGAAKFVIVCSVLSLLFYSLLFFIGCESSPVAGVTNSYEGSPAFTSHENPFSSCNSDCSCDTSEYEPVCGENGITYFS 538 (735)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHEecCCCCcccceecCCCCCCccccCCCchhhhhcCCCCCCcCcCcccCCCCCEEeC
Confidence 34455444444444444422222110 00 0000 0
Q ss_pred ------------------------cc----------------c-ccchH-HHHHHHHHHHHHHhccccchhhhhccCCch
Q psy13784 279 ------------------------EW----------------G-FFNLI-PLAALVLNLVASSVGFLPIPYLMLGEIFPM 316 (388)
Q Consensus 279 ------------------------~~----------------~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 316 (388)
.+ + ..... .++..++..+....+..|. +.++-..+|+
T Consensus 539 pChAGC~~~~~~~~~~~~ytnCsCv~~~~~~~~~a~~G~C~~~c~~~~~~Fl~~~~~~sf~~~~~~~p~-~~i~LR~V~~ 617 (735)
T KOG3626|consen 539 PCHAGCTESSGTSDGNTIYTNCSCVPTNKNGNGSAKKGYCPNDCCRQFLIFLALFAIGSFIGALGAVPG-MLIVLRCVPP 617 (735)
T ss_pred hhhhCCcccccCCCCceeeccccccccccCCCceeecCCCCCCcchhhHHHHHHHHHHHHHHHhccCcc-eEEEEEccCc
Confidence 11 0 11122 2222233333333333333 4677888999
Q ss_pred hhHHHHHHHHHHHHH-HHHHHHHHHhHHHHhh
Q psy13784 317 EVKGVAAGLATCLAY-IFGFFAVKTWPTLHLA 347 (388)
Q Consensus 317 ~~r~~~~~~~~~~~~-~g~~~~~~~~g~l~~~ 347 (388)
++|..++|+..+..+ +|.+-+|.++|++.|.
T Consensus 618 e~ks~AlG~~~~~irllg~IPsPIifG~~ID~ 649 (735)
T KOG3626|consen 618 EEKSFALGFQWMLIRLLGFIPSPIIFGAVIDT 649 (735)
T ss_pred hhchhhhHHHHHHHHHHhcCCchHhhhhhHhh
Confidence 999999999998877 5888999999999975
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.8e-13 Score=118.76 Aligned_cols=318 Identities=15% Similarity=0.146 Sum_probs=178.3
Q ss_pred CCCCc-hhHHHHHHHHHHHHHHHH-Hhh---c-chhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHH
Q psy13784 2 DKLGR-KPAIILIGIVGIIGWLLI-TYS---L-TITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWAT 75 (388)
Q Consensus 2 Dr~Gr-r~~~~~~~~~~~~~~~~~-~~~---~-~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~ 75 (388)
.|.|. |+.++.|.++..+++++. ++. + .-+.++++|++.|+|.|.. ...-+|+++ -...++|.++++...
T Consensus 96 ~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~~~~y~mL~~R~l~Gvg~~n~-a~lR~Y~a~---~s~~~dR~rA~a~~~ 171 (488)
T KOG2325|consen 96 NKTGSVKKPLIVSFLIAIIGNLLYLALAYVPNGVKYLMLVARILTGVGVGNF-AVLRAYIAD---ASTVEDRPRAFAATS 171 (488)
T ss_pred cccCCcccCHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHcCcCcccH-HHHHHHHHh---ccCccchHHHHHHhh
Confidence 34554 888999999999999988 433 3 6788999999999997765 567889999 888999999999999
Q ss_pred HHHHHHHHHHHHHHhHH-----------------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHH
Q psy13784 76 TARAFGLLQVYFMGSLL-----------------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKR 138 (388)
Q Consensus 76 ~~~~~G~~~~~~~~~~~-----------------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~ 138 (388)
.+..+|..+||.+...+ -+..+-|+.+++.++..++..++++|.++-..+++..++
T Consensus 172 ~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~i~~~f~E~~~~~~~~~~~~~------- 244 (488)
T KOG2325|consen 172 GGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVIILFFFKEVYRGIIDKKKRSV------- 244 (488)
T ss_pred hHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHHHHhheeecccCccccccccc-------
Confidence 99999999999988877 234677888888888888888888887541111100000
Q ss_pred hcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHcCCCCC
Q psy13784 139 LRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISL-FFLFQQFSAVNVILAYMTDFVRSSGFHLL 217 (388)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~s~~ 217 (388)
++.+.-.+..+.++.-+...+.+. ..+...+.....-..+.+......+.+.+
T Consensus 245 --------------------------~~~~~~~~~~~~~~~d~~~~~vc~~~~~~~~~~~~~iet~~~~~~m~~y~w~~~ 298 (488)
T KOG2325|consen 245 --------------------------EEEKSDIEKVKKPKLDWVAVLVCIFLRFVVNFIATTIETLSSALTMVMYGWTGS 298 (488)
T ss_pred --------------------------hhhccchhhhccCChhHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHhccccc
Confidence 000000111122222222233333 33322222222233334444445566555
Q ss_pred cHHHHHH----HHHHHHHHHHHhhheee-cccCCchHHHHhhHHHHHHHHHHHHHhhcccCccc--c-----cccccc--
Q psy13784 218 NPYFITV----IGGLIIFASVISISFIL-PHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIV--N-----FEWGFF-- 283 (388)
Q Consensus 218 ~~~~~~~----~~~~~~~~~~~~~g~l~-d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~-- 283 (388)
++..... ..++......+...+.. .++.+|..+..+.+....+..+..........+.+ + ......
T Consensus 299 ~av~~~gi~~~~~g~ls~~~~l~~~f~~l~~i~~r~~~~~g~l~~f~~~~i~~yp~~~~s~pv~~~~~~~~~~~~~~y~w 378 (488)
T KOG2325|consen 299 EAVLYNGITLSISGILSVILLLLYIFTRLGKIDKRRIILLGFLIFFLSYYIFTYPWGFYSGPVQPYNTTYAGCDFEEYSW 378 (488)
T ss_pred hHHHhhhhHHHHHHHHHHHHHHHHHHHHhhhhccceeeeehHHHHHHhhheeeeeccccccccccccccccCcCcccchh
Confidence 4433322 22222222222222222 33344555444433333333333221111110000 0 000011
Q ss_pred -------chHHHHHHHHHHHHHHhc-cccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhH
Q psy13784 284 -------NLIPLAALVLNLVASSVG-FLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGIFFF 355 (388)
Q Consensus 284 -------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~ 355 (388)
+...+.......++.... ......+.-+|...++++++..++.......+..++|..........|....+.
T Consensus 379 c~~~~~v~~~~~l~~~i~~~g~~~P~~~~~~~tlySkiLgp~~q~~~qg~~~~~~s~~~~~~~~~~t~~~~~~g~~~v~~ 458 (488)
T KOG2325|consen 379 CDTTTAVPLILYLISFIVVFGIAFPFISTALDTLYSKILGPRDQGTMQGVFSISGSIARVVGPIFSTAIFTLSGPRPVWI 458 (488)
T ss_pred hccCcccChhhheeehhheeccccccccchHHHHHHHHhCCccccceeEEEEeccchhhhhhHHHHhhhHHhcCccHHHH
Confidence 111111111111111111 122334677899999999999999999999999999999988888888333333
Q ss_pred H
Q psy13784 356 Y 356 (388)
Q Consensus 356 ~ 356 (388)
.
T Consensus 459 ~ 459 (488)
T KOG2325|consen 459 I 459 (488)
T ss_pred H
Confidence 3
|
|
| >COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.48 E-value=3.2e-13 Score=115.94 Aligned_cols=180 Identities=13% Similarity=0.072 Sum_probs=142.3
Q ss_pred hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHH
Q psy13784 180 YKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIAL 259 (388)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~ 259 (388)
+.+.+...++........-..+..-.|.+.++.|+|..|.+.+.+...+...++.++.|.++||.+.|+.+..++++.++
T Consensus 27 r~qif~~~fiGYa~fYl~RknF~~a~p~l~e~~~lsk~~lG~i~s~f~i~YG~sKf~~G~~sDr~npr~fm~~gLilsai 106 (448)
T COG2271 27 RIQIFLSIFIGYAAFYLTRKNFNLAMPALIEDGGLSKTQLGILGSAFSITYGVSKFVMGVLSDRSNPRYFMAFGLILSAI 106 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhccHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCceeehHHHHHHHH
Confidence 44444444444443333344566677888888789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q psy13784 260 SMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVK 339 (388)
Q Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~ 339 (388)
..+++++. ++.+...++..+.+.+-+.++ |.....+..-+|+++||+..++-++..++|+.+.|.
T Consensus 107 ~nil~Gfs--------------~s~~~~~~l~~lng~fQg~Gw-pp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~ 171 (448)
T COG2271 107 VNILFGFS--------------PSLFLFAVLWVLNGWFQGMGW-PPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPL 171 (448)
T ss_pred HHHHHhhh--------------hHHHHHHHHHHHHHHHhcCCC-cHHHHHHHHHcCccccCceEEEehhhhhcccchHHH
Confidence 99999882 233444444455555555555 666688999999999999999999999999999999
Q ss_pred Hh--HHHHhhcc-cchhhHHHHHHHHHHHHhheeccCC
Q psy13784 340 TW--PTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 340 ~~--g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
+. +.+.++.+ ...|+.-++++++.+++.++..+++
T Consensus 172 ~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~ 209 (448)
T COG2271 172 VALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDR 209 (448)
T ss_pred HHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 99 88888888 7888888888888887777666543
|
|
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.3e-13 Score=102.31 Aligned_cols=116 Identities=27% Similarity=0.427 Sum_probs=106.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+.+..+..+..++.+...+.++++.+.+.+++.|++.+...+....++.| ..|+++|++..++......+
T Consensus 22 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 98 (141)
T TIGR00880 22 TDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIAD---IYPPEERGVALGLMSAGIAL 98 (141)
T ss_pred HhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHH---HCChhhhhHHHHHHHHhHHH
Confidence 499999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCC
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPES 119 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pes 119 (388)
|..+++.+++.+ +|++.+++.++..++..+..+++.||+
T Consensus 99 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (141)
T TIGR00880 99 GPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET 141 (141)
T ss_pred HHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence 999999999888 899999999888888777777756663
|
|
| >PRK14995 methyl viologen resistance protein SmvA; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.6e-12 Score=120.81 Aligned_cols=176 Identities=13% Similarity=0.076 Sum_probs=130.9
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHH
Q psy13784 185 IISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVI 264 (388)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~ 264 (388)
....+..+........+..-.|.+.+++|.+..+.++....+.++...+.+..|+++||+|||+.+..+..+..++.+..
T Consensus 9 ~~~~~~~~~~~ld~tiv~~a~p~i~~~l~~s~~~~~~~~~~~~l~~~~~~~~~G~l~D~~Grk~~l~~~~~~~~~~~~~~ 88 (495)
T PRK14995 9 VIIVLVYIPVAIDATVLHVAAPTLSMTLGASGNELLWIIDIYSLVMAGMVLPMGALGDRIGFKRLLMLGGTLFGLASLAA 88 (495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 33334444444445667777899998999988899999999999999999999999999999999999999988888887
Q ss_pred HHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccC-CchhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy13784 265 GTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEI-FPMEVKGVAAGLATCLAYIFGFFAVKTWPT 343 (388)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~ 343 (388)
.. .++.+..+ ......+.......+.......+. .|+++|+++.|+......+|..+||.+.+.
T Consensus 89 ~~--------------a~~~~~li-~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~ 153 (495)
T PRK14995 89 AF--------------SPTASWLI-ATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGI 153 (495)
T ss_pred HH--------------cCCHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65 11223333 333333333333445444555555 478899999999999999999999999999
Q ss_pred HHhhcc-cchhhHHHHHHHHHHHHhheeccCCC
Q psy13784 344 LHLALG-NGIFFFYGLVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 344 l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (388)
+.+..+ ...|++...+.++..++..+.+|+.+
T Consensus 154 l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~ 186 (495)
T PRK14995 154 LLEHFYWGSVFLINVPIVLVVMGLTARYVPRQA 186 (495)
T ss_pred hhccCChHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999988 66777766666666665656666643
|
|
| >PRK10504 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-12 Score=119.44 Aligned_cols=168 Identities=15% Similarity=0.069 Sum_probs=125.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhc
Q psy13784 191 LFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLF 270 (388)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (388)
.+........+..+.|.+.++.|.++.+.++......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 19 ~~~~~~~~~~~~~~~p~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~r~~~~~~~~~~~~~~~~~~~~--- 95 (471)
T PRK10504 19 FFMQSLDTTIVNTALPSMAQSLGESPLHMHMVIVSYVLTVAVMLPASGWLADRVGVRNIFFTAIVLFTLGSLFCALS--- 95 (471)
T ss_pred HHHHHHhHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHh---
Confidence 33344445667778999999999998888888888889999999999999999999999988877777766655431
Q ss_pred ccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-
Q psy13784 271 EKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG- 349 (388)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g- 349 (388)
.+.+.. .......+.......+.......|.+|+++|+++.|+.+...++|..++|.+.+.+.+..+
T Consensus 96 -----------~~~~~l-~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw 163 (471)
T PRK10504 96 -----------GTLNEL-LLARVLQGVGGAMMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASW 163 (471)
T ss_pred -----------CCHHHH-HHHHHHHHhhhHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccH
Confidence 122222 2333333333333456677888999999999999999999999999999999999999888
Q ss_pred cchhhHHHHHHHHHHHHhheeccC
Q psy13784 350 NGIFFFYGLVAAIGTAHVLAYLPE 373 (388)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~ 373 (388)
...+.+...+..+..+......|+
T Consensus 164 ~~~f~~~~~~~~l~~~~~~~~~~~ 187 (471)
T PRK10504 164 HWIFLINIPVGIIGAIATLMLMPN 187 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCC
Confidence 666766666655555555444444
|
|
| >PRK10091 MFS transport protein AraJ; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.4e-12 Score=117.30 Aligned_cols=163 Identities=10% Similarity=0.037 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccc
Q psy13784 198 VNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVN 277 (388)
Q Consensus 198 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (388)
........|.+.++.|.+..+.+.......++..+++++.|++.||+|||+.+..+..+.+++.++...
T Consensus 19 ~~~~~~~l~~~~~~~g~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~l~~~----------- 87 (382)
T PRK10091 19 EFGIMGVLTELAHDVGISIPAAGHMISYYALGVVVGAPIIALFSSRYSLKHILLFLVALCVIGNAMFTL----------- 87 (382)
T ss_pred HHHHHhChHHHHHHcCCCHHHHhHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHH-----------
Confidence 345566778888888999899999999999999999999999999999999999998888888877755
Q ss_pred ccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHH
Q psy13784 278 FEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFY 356 (388)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~ 356 (388)
.++.+...+ ..+..+.......+.......|.+|+++|+.+++.......++..++|.+.+.+.+..+ ...+.+.
T Consensus 88 ---~~~~~~l~~-~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~ 163 (382)
T PRK10091 88 ---SSSYLMLAI-GRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLI 163 (382)
T ss_pred ---hCcHHHHHH-HHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHH
Confidence 112233333 33333333222335555778899999999999999999999999999999999888888 6677777
Q ss_pred HHHHHHHHHHhheeccCCC
Q psy13784 357 GLVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~ 375 (388)
+.+.++..+......||.+
T Consensus 164 ~~~~~~~~~~~~~~lp~~~ 182 (382)
T PRK10091 164 AVFNIAVLASIYFWVPDIR 182 (382)
T ss_pred HHHHHHHHHHHHHhCCCCC
Confidence 7766666555555567653
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.3e-12 Score=111.11 Aligned_cols=358 Identities=15% Similarity=0.097 Sum_probs=206.7
Q ss_pred CCCC-CchhHHHHHHHHHHHHHHHHHhhc--chhHHHHHHHHHhhhccccccchhhhhcccccccCch--hhhHHHHHHH
Q psy13784 1 MDKL-GRKPAIILIGIVGIIGWLLITYSL--TITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTK--LRGSLATWAT 75 (388)
Q Consensus 1 sDr~-Grr~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~--~r~~~~~~~~ 75 (388)
+||+ |+|+++.+|.++..+|.++.+.++ +...+.++-.+.++|.|..-+....++.| .+|++ +|-..+++..
T Consensus 85 aDr~LG~~~tI~lGail~~iGh~~L~~~~~~~~~gl~i~L~~I~iG~Gl~K~NiS~llg~---ly~~~DprrD~gFt~fY 161 (498)
T COG3104 85 ADRVLGTRRTIVLGAILMAIGHLVLAISSVSGPGGLYIGLALIIVGTGLFKPNISSLLGE---LYPKDDPRRDGGFTLFY 161 (498)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHhccccccccHHHHHHH---hcCCCCcccCCCccEEE
Confidence 5885 999999999999999999999984 78899999999999999999999999999 77754 4667788999
Q ss_pred HHHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCC----CchHHhhcC-ChhhHH----HHHHHhcCC
Q psy13784 76 TARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPE----SPAWLNSKG-RRGDAE----WAAKRLRLG 142 (388)
Q Consensus 76 ~~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pe----sp~~~~~~~-~~~~~~----~~~~~~~~~ 142 (388)
++.++|.+++|++.+++ +|+..|.+.++-..+.++..+. .+. ++.-..... +..+.. .........
T Consensus 162 ~~iNiGsl~~p~i~~~~~~~~g~~~gF~~aavGm~~gl~~f~~-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (498)
T COG3104 162 MGINIGSLIAPIITGLLAINYGWHVGFGLAAVGMIIGLVIFLL-GRRHVKGIGGVPDPNPLSFNFLLPVLGGLVVMILAA 240 (498)
T ss_pred EEeehHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHH-ccchhcCCCCCCCccchhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999998 9999999988877776665554 331 110000000 000000 000000000
Q ss_pred CCCCCCCCCcccccccccc--ccccccchhhhhccCcc---chHHHHHH------HHHHHHHHhhhHHHHHHHHHHHHHH
Q psy13784 143 PPSNQTEPTSRGDAESGAQ--GEQMSTTNIFKEFMKPE---AYKPLIII------SLFFLFQQFSAVNVILAYMTDFVRS 211 (388)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (388)
. .......++...... .-.....-..+.+++++ -+++.+.. ..++...+-.....+..|.....++
T Consensus 241 ~---~~~~l~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~er~r~~~~~~Lfl~~~iFW~~~~Q~~ssl~~~a~~~v~~ 317 (498)
T COG3104 241 L---LTLLLNQNTFSGVLLVISILIAIIYFAEAFRSPKVFDERRRLLAAIPLFLFAVIFWALYEQMGSSLNLYADRNVNR 317 (498)
T ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcc
Confidence 0 000000000000000 00000000011111111 11221111 1122222222223444444444432
Q ss_pred --cCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCc-------hHHHHhhHHHHHHHHHHHHH-hhcccCcccccccc
Q psy13784 212 --SGFHLLNPYFITVIGGLIIFASVISISFILPHTGVK-------PLSAASGMGIALSMLVIGTY-LLFEKAPIVNFEWG 281 (388)
Q Consensus 212 --~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-------~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 281 (388)
.|+ .....+..+...+.-++.+++..++..|.+++ .-+.++...++.+.+.+... .....+ ..
T Consensus 318 ~~~g~-~vp~~~fQslNp~~Iii~~pI~a~l~~~l~~~~~~ps~~~KFalGl~l~g~~fl~l~~~~~~~~~~------~~ 390 (498)
T COG3104 318 QIFGF-EVPPAWFQSLNPFFIILFSPILAALWTKLGRGNKQPSTPIKFALGLILAGLGFLILLLAGIWFGGP------SG 390 (498)
T ss_pred cccce-ecCHHHHHhhCHHHHHHHHHHHHHHHhHhhcCCCCCCcchHHHHHHHHHHHHHHHHHHHHHhhcCC------CC
Confidence 233 44566777777777777777776666663322 12344555566666655443 112210 11
Q ss_pred ccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHH------HHhhcc-cchhh
Q psy13784 282 FFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPT------LHLALG-NGIFF 354 (388)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~------l~~~~g-~~~~~ 354 (388)
..+....+...+.....-....|...+++....|+...+..+++.......++.++..+.+. ..+... ...|+
T Consensus 391 ~~s~~~lil~y~l~s~gEL~iSpvGLs~~t~laP~~~~s~~ma~wfLt~a~~~~l~g~va~~~~~~~~~~~~~~~~~~F~ 470 (498)
T COG3104 391 LVSVWWLVLSYVLQSFGELFISPVGLSMVTKLAPPALKSFIMAMWFLTVAAGQTLGGQVAGLTAVTDPAYTAFIEGRVFG 470 (498)
T ss_pred CcCHHHHHHHHHHHHHHHHHhCHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhhceecccccccchhhhhhhhhhhHH
Confidence 12233344444455555666789999999999999999999999998888888888777763 223333 55666
Q ss_pred HHHHHHHHHHHHhheecc
Q psy13784 355 FYGLVAAIGTAHVLAYLP 372 (388)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~ 372 (388)
..+....+..+......|
T Consensus 471 ~~g~v~i~~~~~~~~~~~ 488 (498)
T COG3104 471 TIGVVAIVIGILLLLLSP 488 (498)
T ss_pred HHHHHHHHHHHHHHHhhH
Confidence 666666666655444433
|
|
| >PRK15403 multidrug efflux system protein MdtM; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-12 Score=115.85 Aligned_cols=161 Identities=12% Similarity=-0.006 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccccc
Q psy13784 200 VILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFE 279 (388)
Q Consensus 200 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (388)
....-.|.+.+++|.+..+.......+.++..++.++.|+++||+|||+.+..+..+..++.+....
T Consensus 34 ~~~p~l~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~G~l~dr~Grr~~l~~~~~~~~~~~~~~~~------------- 100 (413)
T PRK15403 34 LIQPGIINVVRDFNADVSLAPASVSLYLAGGMALQWLLGPLSDRIGRRPVLITGALIFTLACAATLF------------- 100 (413)
T ss_pred hhccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhHHHHHcCchHHHHHHHHHHHHHHHHHHH-------------
Confidence 3334445556677888888999999999999999999999999999999999888887777776654
Q ss_pred ccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHH
Q psy13784 280 WGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGL 358 (388)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~ 358 (388)
.++.+.. ....+..+.......+..+....|.+|++++++++++.+....++..++|.+.+.+.+..| ...|++.++
T Consensus 101 -a~~~~~l-~~~r~l~Gi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~ 178 (413)
T PRK15403 101 -TTSMTQF-LIARFIQGTSICFIATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAV 178 (413)
T ss_pred -cCCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 1122222 2222333322222234555778899999999999999999999999999999999888888 677777777
Q ss_pred HHHHHHHHhheeccCCC
Q psy13784 359 VAAIGTAHVLAYLPETK 375 (388)
Q Consensus 359 ~~~~~~~~~~~~~~~~~ 375 (388)
+.++..+..++..||++
T Consensus 179 ~~~i~~~~~~~~lp~~~ 195 (413)
T PRK15403 179 MGLIAFVGLLLAMPETV 195 (413)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 77766665555667754
|
|
| >PRK11646 multidrug resistance protein MdtH; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.6e-12 Score=114.47 Aligned_cols=161 Identities=11% Similarity=-0.032 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHH-HHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccc
Q psy13784 198 VNVILAYMTDFV-RSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIV 276 (388)
Q Consensus 198 ~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (388)
.+....+.+.++ ++.|.|..+.+.......+...+..++.|+++||+|||+.+..+.....++.+.+...
T Consensus 26 ~~~~~~~~~~~~~~~~g~s~~~~gl~~~~~~l~~~~~~~~~G~l~dr~g~k~~l~~~~~~~~~~~~~~~~~--------- 96 (400)
T PRK11646 26 FFVVFPLISIRFVDQLGWAAVMVGIALGLRQFIQQGLGIFGGAIADRFGAKPMIVTGMLMRAAGFATMAIA--------- 96 (400)
T ss_pred HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHh---------
Confidence 455566666665 5679999999999999999999999999999999999999999998888888777541
Q ss_pred cccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhH
Q psy13784 277 NFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFF 355 (388)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~ 355 (388)
++.+..... ....+.......|...+++.|.+|+++|+++.|+.+...++|..+||.+.+.+. ..+ ...+++
T Consensus 97 -----~~~~~l~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~-~~g~~~~f~~ 169 (400)
T PRK11646 97 -----HEPWLLWLS-CILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLL-QYDFRLVCAT 169 (400)
T ss_pred -----ccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHH
Confidence 122333333 223333333334566688899999999999999999999999999999999988 567 666776
Q ss_pred HHHHHHHHHHHhheeccCC
Q psy13784 356 YGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~ 374 (388)
.+.+.++..++.....||.
T Consensus 170 ~~~~~~~~~i~~~~~~~~~ 188 (400)
T PRK11646 170 GAVLFVLAAAFNAWLLPAY 188 (400)
T ss_pred HHHHHHHHHHHHHHhCCcc
Confidence 6666665554444445553
|
|
| >PRK11652 emrD multidrug resistance protein D; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.7e-12 Score=113.94 Aligned_cols=162 Identities=14% Similarity=0.001 Sum_probs=118.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccc
Q psy13784 199 NVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNF 278 (388)
Q Consensus 199 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (388)
.......|.+.++.|.|+.+.+.......++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 25 ~~~~p~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~----------- 93 (394)
T PRK11652 25 TIYVPAIADMARDLNVREGAVQAVMAAYLLTYGLSQLFYGPLSDRVGRRPVILVGMSIFILGTLVALFA----------- 93 (394)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhhhHHHhcCChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 344445677778889999999999999999999999999999999999999988887777777665441
Q ss_pred cccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHH
Q psy13784 279 EWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYG 357 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~ 357 (388)
++.+.. ....+..+.......+....+..|.+++++++.+.+..+....++..++|.+.+.+.+..+ ...+++.+
T Consensus 94 ---~~~~~l-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~ 169 (394)
T PRK11652 94 ---HSLTVL-IAASAIQGLGTGVGGVMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLL 169 (394)
T ss_pred ---ccHHHH-HHHHHHHHhhhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHH
Confidence 122222 2222222222222234555677888999999999999999999999999999999888888 56666666
Q ss_pred HHHHHHHHHhheeccCCC
Q psy13784 358 LVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~ 375 (388)
+..++..+......||++
T Consensus 170 ~~~~~~~~~~~~~~~~~~ 187 (394)
T PRK11652 170 LLGAGVTFSMARWMPETR 187 (394)
T ss_pred HHHHHHHHHHHHhCCccC
Confidence 655555444445566653
|
|
| >TIGR00900 2A0121 H+ Antiporter protein | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.3e-12 Score=114.19 Aligned_cols=160 Identities=13% Similarity=0.027 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccc
Q psy13784 198 VNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVN 277 (388)
Q Consensus 198 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (388)
........|.+..+.+.++.+.+.......++..++.++.|+++||+|||+.+..+..+..++.+..........
T Consensus 15 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~----- 89 (365)
T TIGR00900 15 TAITQVALPLYVLAGTGSASVLSLAALAGMLPYVVLSPIAGALADRYDRKKVMIGADLIRAVLVAVLPFVALLGG----- 89 (365)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCC-----
Confidence 345556667777777888889999999999999999999999999999999999888777776666554221110
Q ss_pred ccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHH
Q psy13784 278 FEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFY 356 (388)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~ 356 (388)
.+.+..... ....+.......+...++..|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ ...++..
T Consensus 90 ----~~~~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~ 164 (365)
T TIGR00900 90 ----LNIWQVYVL-AGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVD 164 (365)
T ss_pred ----CcHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 122333333 3333333334456677899999999999999999999999999999999999998888 5556665
Q ss_pred HHHHHHHHHHh
Q psy13784 357 GLVAAIGTAHV 367 (388)
Q Consensus 357 ~~~~~~~~~~~ 367 (388)
++..++..+..
T Consensus 165 ~~~~~~~~~~~ 175 (365)
T TIGR00900 165 AVGFAISALLI 175 (365)
T ss_pred HHHHHHHHHHH
Confidence 55555444433
|
|
| >PRK11102 bicyclomycin/multidrug efflux system; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.9e-12 Score=116.33 Aligned_cols=161 Identities=15% Similarity=0.089 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccc
Q psy13784 199 NVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNF 278 (388)
Q Consensus 199 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (388)
.......|.+.++.|.++.+.+.......++..++.++.|++.||+|||+.+..+..+..++...+...
T Consensus 8 ~~~~p~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~i~~~~~~~~----------- 76 (377)
T PRK11102 8 DMYLPALPVIAADFGVSAGSVQMTLSAYILGFAIGQLFYGPMADSFGRKPVILGGTLVFALAAVACALA----------- 76 (377)
T ss_pred HHHhccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhhchHHhhcCChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 344566777788889999999999999999999999999999999999999998888888887777541
Q ss_pred cccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHH
Q psy13784 279 EWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYG 357 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~ 357 (388)
++.+... ...+..+.......+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+..+ ...+++.+
T Consensus 77 ---~~~~~~~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~ 152 (377)
T PRK11102 77 ---QTIDQLI-YMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLA 152 (377)
T ss_pred ---ccHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHH
Confidence 1222222 223333333333445666889999999999999999999999999999999999998888 56677777
Q ss_pred HHHHHHHHHhheeccCC
Q psy13784 358 LVAAIGTAHVLAYLPET 374 (388)
Q Consensus 358 ~~~~~~~~~~~~~~~~~ 374 (388)
.+.++..++.....||+
T Consensus 153 ~~~~~~~~~~~~~~~~~ 169 (377)
T PRK11102 153 LAAILAAALVFFFIPET 169 (377)
T ss_pred HHHHHHHHHHHHhCCcc
Confidence 77666665555556654
|
|
| >PRK15402 multidrug efflux system translocase MdfA; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.3e-12 Score=115.19 Aligned_cols=162 Identities=15% Similarity=-0.019 Sum_probs=119.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccc
Q psy13784 199 NVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNF 278 (388)
Q Consensus 199 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (388)
..+....|.+.+++|.|+.+.+.......++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 30 ~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----------- 98 (406)
T PRK15402 30 DMIQPGMLAVVEDFNAGAEWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAGVAFFILTCLAILLA----------- 98 (406)
T ss_pred hhHhcchHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-----------
Confidence 444445566777889988899999999999999999999999999999999988887777777666441
Q ss_pred cccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHH
Q psy13784 279 EWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYG 357 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~ 357 (388)
++.+..+ ......+.......+.......|.+|++.|.++.++......++..++|.+.+.+.+..+ ...+++.+
T Consensus 99 ---~~~~~l~-~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~ 174 (406)
T PRK15402 99 ---QSIEQFT-LLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFA 174 (406)
T ss_pred ---ccHHHHH-HHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHH
Confidence 1222222 222232222222335566788899999999999999988888999999999999888878 66777777
Q ss_pred HHHHHHHHHhheeccCCC
Q psy13784 358 LVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~ 375 (388)
++.++..+..+...||++
T Consensus 175 ~~~~~~~~~~~~~~~~~~ 192 (406)
T PRK15402 175 ALAALSFFGLWRAMPETA 192 (406)
T ss_pred HHHHHHHHHHHHhCCCCC
Confidence 777666665555567654
|
|
| >PRK12307 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.9e-12 Score=115.64 Aligned_cols=152 Identities=14% Similarity=0.026 Sum_probs=114.7
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHh
Q psy13784 189 FFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYL 268 (388)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 268 (388)
+................|.+.++.|.++.+.+.......++..++.++.|+++||+|||+.+..+.....++.+...+.
T Consensus 25 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~l~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~- 103 (426)
T PRK12307 25 LGYVFDGFDFMLIFYIMYLIKADLGLTDMEGAFLATAAFIGRPFGGALFGLLADKFGRKPLMMWSIVAYSVGTGLSGLA- 103 (426)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHHH-
Confidence 3333333444555666677777889999999999999999999999999999999999999999998888888776551
Q ss_pred hcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy13784 269 LFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL 348 (388)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 348 (388)
.+.+...+ .....+.......+....+..|.+|+++|+++.++......+|..+++.+.+.+.+..
T Consensus 104 -------------~~~~~l~~-~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~ 169 (426)
T PRK12307 104 -------------SGVIMLTL-SRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAY 169 (426)
T ss_pred -------------hHHHHHHH-HHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccC
Confidence 12223333 3333333333344666688999999999999999999999999999999988888877
Q ss_pred c-cchhhH
Q psy13784 349 G-NGIFFF 355 (388)
Q Consensus 349 g-~~~~~~ 355 (388)
+ ...+++
T Consensus 170 ~w~~~f~i 177 (426)
T PRK12307 170 GWRAAFFV 177 (426)
T ss_pred CHHHHHHH
Confidence 7 444444
|
|
| >PRK03893 putative sialic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.1e-12 Score=117.36 Aligned_cols=170 Identities=14% Similarity=0.094 Sum_probs=122.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHh
Q psy13784 189 FFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYL 268 (388)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 268 (388)
+..+.............|.+.+++|.+..+.+.......++..++.++.|++.||+|||+.+..+..+..++.+.+.+.
T Consensus 27 ~~~~~~~~~~~~~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~- 105 (496)
T PRK03893 27 LGYLLDGFDFVLITLVLTEVQGEFGLTTVQAASLISAAFISRWFGGLLLGAMGDRYGRRLAMVISIVLFSVGTLACGFA- 105 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHH-
Confidence 3333333444556667788878889998899999999999999999999999999999999998888888877776551
Q ss_pred hcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy13784 269 LFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL 348 (388)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 348 (388)
.+...+....+..+....+..+....++.|.+|+++|+.+.++......+|..++|.+.+.+.+..
T Consensus 106 --------------~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~ 171 (496)
T PRK03893 106 --------------PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVW 171 (496)
T ss_pred --------------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 122223333333344334444666688999999999999999999999999999999999998888
Q ss_pred c-cchhhHHHHHHHHHHHHhheeccCC
Q psy13784 349 G-NGIFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 349 g-~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
+ ...+.+ +.+..+..++.....||.
T Consensus 172 ~w~~~f~~-~~~~~~~~~~~~~~~p~~ 197 (496)
T PRK03893 172 GWRALFFI-GILPIIFALWLRKNLPEA 197 (496)
T ss_pred CHHHHHHH-HHHHHHHHHHHHHhCCCc
Confidence 8 444443 333333333333334543
|
|
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-11 Score=105.15 Aligned_cols=307 Identities=14% Similarity=0.150 Sum_probs=188.4
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+|..|.|++++++.+...+...+..+.++...+-+..+.-|++.+.. .+-++|+.. ..|+++-.++.+...++.-+
T Consensus 65 td~l~Ykpviil~~~~~i~t~~lll~~~sv~~mq~~q~~yg~~~a~e-vay~sYiys---~v~~~~yq~vts~~raa~l~ 140 (412)
T PF01770_consen 65 TDYLRYKPVIILQALSYIITWLLLLFGTSVLAMQLMQFFYGLATAAE-VAYYSYIYS---VVDKEHYQKVTSYTRAATLV 140 (412)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHH-HHHHHHhee---ecCHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999999999999999999999998875 667788988 89999999999999999999
Q ss_pred HHHHHHHHHhHH------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccc
Q psy13784 81 GLLQVYFMGSLL------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRG 154 (388)
Q Consensus 81 G~~~~~~~~~~~------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (388)
|..++.++|..+ +.+....+......+..++.++ +|..++-..-+++.++... ..+....+.++.++ ...
T Consensus 141 g~~~s~~lgQllvs~~~~sy~~L~~isl~~~~~a~~~~~f-LP~~~~S~~f~r~~~~~~~-~~~~~~~~~~~~~~--~~~ 216 (412)
T PF01770_consen 141 GRFISSLLGQLLVSFGGVSYFQLNYISLASVSLALLIALF-LPMPKRSLFFHRKPPAEQD-ANESESDKMNESPE--SSS 216 (412)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH-cCCCCcccceeccCccccc-cccccccccccccc--ccc
Confidence 999999998887 6777777776666666666666 8876653322222111110 00000000000000 000
Q ss_pred ccccccc-ccc-------cccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc---CCCCCcHHHHH
Q psy13784 155 DAESGAQ-GEQ-------MSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSS---GFHLLNPYFIT 223 (388)
Q Consensus 155 ~~~~~~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---g~s~~~~~~~~ 223 (388)
+.++.++ ... .-.+.+++..+++...+.. ++.....++++.+..|...+.++. +-+..--|..-
T Consensus 217 ~~~~~~~~~~~~~~~~l~~l~~~~~~~y~~~~ll~WS-----lWWa~atcgy~qv~nYvQ~LW~~v~~~~~~~vYNG~Ve 291 (412)
T PF01770_consen 217 STEKSPSTESSSRKSVLRLLWKDFKSCYSNPRLLLWS-----LWWAFATCGYYQVINYVQSLWDTVPPSDNESVYNGAVE 291 (412)
T ss_pred ccccCcccccchHHHHHHHHHHHHHHHhcCchHHHHH-----HHHHHHHhHHHHHHHHHHHHHHhcCCCCCCcccchHHH
Confidence 0000000 000 1112334444555444333 344445556777888888887766 22234456777
Q ss_pred HHHHHHHHHHHHhhheeecccCCchHHHHhhHHH--HHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhc
Q psy13784 224 VIGGLIIFASVISISFILPHTGVKPLSAASGMGI--ALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVG 301 (388)
Q Consensus 224 ~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 301 (388)
....+.+.++++..|++..++.+..-+..+.... +..++++.. ..+.|......+++...+...
T Consensus 292 A~~tllgA~~al~~g~v~~~w~~~~~l~l~~~S~l~a~~L~lm~~--------------t~~Iwv~Y~~yIif~~~y~fl 357 (412)
T PF01770_consen 292 AASTLLGAIAALLAGYVKVNWDRWGELALGVFSLLQAGLLFLMSF--------------TGNIWVCYAGYIIFRSLYMFL 357 (412)
T ss_pred HHHHHHHHHHHHHHhHhhcchHHHHHHHHHHHHHHHHHHHHHHHH--------------hhHHHHHHHHHHHHHHHHHHH
Confidence 7778888888899998855555544443333322 233333322 234566666666666665554
Q ss_pred cccchhhhhccCCchhhHHHHHHHHHHHHHHHHH
Q psy13784 302 FLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGF 335 (388)
Q Consensus 302 ~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~ 335 (388)
. ++....++.....+.-+..+|+.++...+-+.
T Consensus 358 i-TiA~~qIA~~l~~e~yaLVFGiNtf~Al~LQt 390 (412)
T PF01770_consen 358 I-TIASFQIAKNLSEERYALVFGINTFVALVLQT 390 (412)
T ss_pred H-HHHHHHHHHhccccceeeeeeeHHHHHHHHHH
Confidence 3 44445555555556566777766655544443
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >TIGR00897 2A0118 polyol permease family | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.7e-12 Score=114.68 Aligned_cols=149 Identities=10% Similarity=-0.077 Sum_probs=105.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccc
Q psy13784 199 NVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNF 278 (388)
Q Consensus 199 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (388)
.....+.+.+.++.|.++.+.+.......++..++.++.|++.||+|||+.+..+..+..++.+.......
T Consensus 30 ~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~g~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~--------- 100 (402)
T TIGR00897 30 GLEQGWLSPFLKALGLSPQQSASAFTLYGIAAAISAWISGVVAEIIGPLKTMMIGLLLWCVGHAAFIVFGL--------- 100 (402)
T ss_pred hhHHHhHHHHHHHhCCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHhc---------
Confidence 44555677777888999999999999999999999999999999999999999888887777654422110
Q ss_pred cccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHH-HHHHHHhHHHHhhcc-cchhhHH
Q psy13784 279 EWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFG-FFAVKTWPTLHLALG-NGIFFFY 356 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~-~~~~~~~g~l~~~~g-~~~~~~~ 356 (388)
...++..........+.......+.......+.+|+++|++++|+.++..++|. .++|.+.+.+.+..| ...++..
T Consensus 101 --~~~~~~~l~~~~~i~G~g~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~~g~~~~~~~~ 178 (402)
T TIGR00897 101 --GHANYPLILLFYGIRGLGYPLFAYSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPAFGEMNTLWSA 178 (402)
T ss_pred --cCccHHHHHHHHHHHHcchHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 011222222222222222222223444667788999999999999999999986 578988888888777 4444433
Q ss_pred HH
Q psy13784 357 GL 358 (388)
Q Consensus 357 ~~ 358 (388)
..
T Consensus 179 ~~ 180 (402)
T TIGR00897 179 LA 180 (402)
T ss_pred HH
Confidence 33
|
This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis. |
| >PRK10642 proline/glycine betaine transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.6e-13 Score=122.14 Aligned_cols=136 Identities=15% Similarity=0.072 Sum_probs=102.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHH---HHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLL---ITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTA 77 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~ 77 (388)
+||+|||+++..+.++..++.+. ...+++...++++|++.|++.+........++.| .+|++.|+++++.....
T Consensus 310 ~dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~---~~p~~~Rg~~~g~~~~~ 386 (490)
T PRK10642 310 SDRFGRRPFVILGSVALFVLAIPAFILINSNVIGLIFAGLLMLAVILNCFTGVMASTLPA---MFPTHIRYSALAAAFNI 386 (490)
T ss_pred HHHhccHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCCccchHHHHHHHHH
Confidence 59999999988877654433322 2234567788889999998877777777888899 99999999999974444
Q ss_pred HHHHHHHHHHHHhHH-----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhc-----CChhhHHHHHHHhc
Q psy13784 78 RAFGLLQVYFMGSLL-----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSK-----GRRGDAEWAAKRLR 140 (388)
Q Consensus 78 ~~~G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~-----~~~~~~~~~~~~~~ 140 (388)
..++..++|.+.+++ +|+.+++...+++++..+..++ +||+|+|+.++ +|.+|+++.+++++
T Consensus 387 ~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~-~pes~~~~~~~~~~~~~~~~~a~~~l~~~~ 458 (490)
T PRK10642 387 SVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVT-MKETANRPLKGATPAASDIQEAKEILVEHY 458 (490)
T ss_pred HHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHH-hccccCCCCCCccccccchhhHHHHhhccc
Confidence 445556677666665 5788877777777766666555 89999998765 78888998888886
|
|
| >PRK10489 enterobactin exporter EntS; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=5e-12 Score=115.16 Aligned_cols=166 Identities=11% Similarity=-0.059 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccc
Q psy13784 198 VNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVN 277 (388)
Q Consensus 198 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (388)
........|.+.++.+.++.+.+.......++..+++++.|+++||+|||+.+..+....+++...+........
T Consensus 33 ~~~~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~~~~~~~G~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~----- 107 (417)
T PRK10489 33 LGLLGVAVPVQIQMMTGSTLQVGLSVTLTGGAMFIGLMVGGVLADRYDRKKLILLARGTCGLGFIGLALNAFLPE----- 107 (417)
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHhhhcCCceEEEehHHHHHHHHHHHHHHHHcCC-----
Confidence 455666778888877888889999999999999999999999999999999988877766666655433111111
Q ss_pred ccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHH
Q psy13784 278 FEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFY 356 (388)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~ 356 (388)
++...+....+..+.......+.......|.+|+++|+++.++.+...++|..+||.+.+.+.+..+ ...+++.
T Consensus 108 -----~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~ 182 (417)
T PRK10489 108 -----PSLLAIYLLGLWDGFFGSLGVTALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLA 182 (417)
T ss_pred -----CcHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHH
Confidence 1222222222222222222234555788999999999999999999999999999999999988877 5555555
Q ss_pred HHHHHHHHHHhheeccCC
Q psy13784 357 GLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~ 374 (388)
+...++..+ .....|++
T Consensus 183 ~~~~~~~~~-~~~~l~~~ 199 (417)
T PRK10489 183 AAGTFITLL-PLLRLPAL 199 (417)
T ss_pred HHHHHHHHH-HHHhCCCC
Confidence 554444443 33445543
|
|
| >TIGR00881 2A0104 phosphoglycerate transporter family protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.3e-12 Score=117.35 Aligned_cols=162 Identities=13% Similarity=0.010 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccc
Q psy13784 198 VNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVN 277 (388)
Q Consensus 198 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (388)
...+....|.+.+++|.+..+.+.......++..++.++.|+++||+|||+.+..+..+..++.++....
T Consensus 11 ~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~---------- 80 (379)
T TIGR00881 11 RKNFALAMPYLVEEIGLSKTDLGLLLSSFSIAYGISKFVMGSVSDRSNPRVFLPIGLILCAIVNLFFGFS---------- 80 (379)
T ss_pred HHhhhhhhHHHHHHhCCCHhHHHHHHHHHHHHHHhhhhhhhHHHHhhCCeehhHHHHHHHHHHHHHHHHh----------
Confidence 4556667787778889999999999999999999999999999999999999999988888888777651
Q ss_pred ccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHH-HHhHHHHhhcc-cchhhH
Q psy13784 278 FEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAV-KTWPTLHLALG-NGIFFF 355 (388)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~-~~~g~l~~~~g-~~~~~~ 355 (388)
.+........+..+.......+...++..|.+|+++|+.+.++.+....+|..++| .+.+.+.+..+ ...+++
T Consensus 81 -----~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 155 (379)
T TIGR00881 81 -----TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIV 155 (379)
T ss_pred -----hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHH
Confidence 12222333333334444444577778999999999999999999999999999999 46666666666 566666
Q ss_pred HHHHHHHHHHHhheeccCC
Q psy13784 356 YGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~ 374 (388)
.+.+.++..++.....+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~ 174 (379)
T TIGR00881 156 PGIIAIIVSLICFLLLRDS 174 (379)
T ss_pred HHHHHHHHHHHHheeeCCC
Confidence 6666666655555555553
|
|
| >PRK03699 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.3e-11 Score=111.49 Aligned_cols=153 Identities=11% Similarity=-0.029 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccc
Q psy13784 198 VNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVN 277 (388)
Q Consensus 198 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (388)
........|.+.++.|.|..+.+.......++..++.++.|++.||+|||+.+..+.....++.++....
T Consensus 23 ~~~~g~~~~~i~~~~~~s~~~~g~~~s~~~~~~~i~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~l~~~~---------- 92 (394)
T PRK03699 23 VIVTGMVMGPIAEYFNLPVSSMSNTFTFLNAGILISIFLNAWLMEIIPLKRQLIFGFALMILAVAGLMFS---------- 92 (394)
T ss_pred HHHHhhhhHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHc----------
Confidence 4556667788888889999999999999999999999999999999999999988888777777766541
Q ss_pred ccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-cc-cchhhH
Q psy13784 278 FEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA-LG-NGIFFF 355 (388)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~-~g-~~~~~~ 355 (388)
++.+...+...+...+.+ ...+....++.|.+|+++|+.+.+..+....+++.++|.+.+.+.+. .+ ...+..
T Consensus 93 ----~~~~~~~~~~~l~G~~~g-~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~ 167 (394)
T PRK03699 93 ----HSLALFSIAMFVLGVVSG-ITMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYAC 167 (394)
T ss_pred ----chHHHHHHHHHHHHHhhH-hhccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 122222233233333333 23355668889999999999999999888899999999998887654 46 556666
Q ss_pred HHHHHHHHHH
Q psy13784 356 YGLVAAIGTA 365 (388)
Q Consensus 356 ~~~~~~~~~~ 365 (388)
.+++.++..+
T Consensus 168 ~~~~~~~~~~ 177 (394)
T PRK03699 168 IGLVYVAIFI 177 (394)
T ss_pred HHHHHHHHHH
Confidence 6665555444
|
|
| >PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.5e-11 Score=111.64 Aligned_cols=162 Identities=12% Similarity=0.003 Sum_probs=109.8
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccc
Q psy13784 201 ILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEW 280 (388)
Q Consensus 201 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (388)
+....|.+.++ |++..+.+.......++..++.++.|+++||+|||+.+..+..+..++.+.+.+....
T Consensus 48 ~~~~~p~l~~~-g~s~~~~g~~~~~~~i~~~~~~~~~G~l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~---------- 116 (452)
T PRK11273 48 FALAMPYLVEQ-GFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWA---------- 116 (452)
T ss_pred HHHhhHHHHHc-CCCHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhHHHHHHHHHHHHHHHHhhhcc----------
Confidence 44566766666 9999999999999999999999999999999999999998888888777766542100
Q ss_pred cccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHH-HHHHhHHHHhhcc-cchhhHHHH
Q psy13784 281 GFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFF-AVKTWPTLHLALG-NGIFFFYGL 358 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~-~~~~~g~l~~~~g-~~~~~~~~~ 358 (388)
..+...........+.+.....+.....+.|.+|+++|++++|+.+....+|+.+ +|.+...+....+ ...+++.++
T Consensus 117 -~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~ 195 (452)
T PRK11273 117 -TSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAF 195 (452)
T ss_pred -cccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1122222222223333333333545577889999999999999999998888754 4443333333335 556666666
Q ss_pred HHHHHHHHhheeccCC
Q psy13784 359 VAAIGTAHVLAYLPET 374 (388)
Q Consensus 359 ~~~~~~~~~~~~~~~~ 374 (388)
+.++..++..+++||+
T Consensus 196 ~~~~~~~l~~~~~~~~ 211 (452)
T PRK11273 196 AAILVALFAFAMMRDT 211 (452)
T ss_pred HHHHHHHHHHHHccCC
Confidence 6666555555555553
|
|
| >PRK15462 dipeptide/tripeptide permease D; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.8e-12 Score=113.32 Aligned_cols=156 Identities=11% Similarity=0.057 Sum_probs=114.9
Q ss_pred hhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHHhhheeeccc-CCchHHHHhhHHHHHHHHHHHHHhhcccC
Q psy13784 196 SAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVISISFILPHT-GVKPLSAASGMGIALSMLVIGTYLLFEKA 273 (388)
Q Consensus 196 ~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (388)
..++.+..+.|.+++ +.|++..+++...........++.+++|+++||+ |||+.+..+.+...++.+++...
T Consensus 23 fs~Yg~~~~L~~yL~~~lgls~~~a~~i~~~~~~~~~l~~ligG~LaDRilGrrr~iliG~il~~lg~lll~~~------ 96 (493)
T PRK15462 23 FSFYGMRALLILYLTNQLKYDDNHAYELFSAYCSLVYVTPILGGFLADKVLGNRMAVMLGALLMAIGHVVLGAS------ 96 (493)
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHh------
Confidence 346777888888886 4699999999999999999999999999999999 99999999998888887655430
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchh--hHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-c
Q psy13784 274 PIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPME--VKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-N 350 (388)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~ 350 (388)
............+...+. ....+...++..|.+|++ .|.++.++.+...++|+.++|.+.+++.+..| +
T Consensus 97 -------~~~~~~~~l~l~li~iG~-G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~ 168 (493)
T PRK15462 97 -------EIHPSFLYLSLAIIVCGY-GLFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWA 168 (493)
T ss_pred -------hcchhHHHHHHHHHHHhc-ccccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChH
Confidence 001111222222222222 223355568899999975 69999999999999999999999999998888 6
Q ss_pred chhhHHHHHHHHHHH
Q psy13784 351 GIFFFYGLVAAIGTA 365 (388)
Q Consensus 351 ~~~~~~~~~~~~~~~ 365 (388)
..|...++..+++.+
T Consensus 169 ~~F~iaaigm~l~li 183 (493)
T PRK15462 169 MGFGLAAVGMIAGLV 183 (493)
T ss_pred HHHHHHHHHHHHHHH
Confidence 666665544444333
|
|
| >TIGR00903 2A0129 major facilitator 4 family protein | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.5e-12 Score=110.97 Aligned_cols=162 Identities=17% Similarity=0.015 Sum_probs=117.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccc
Q psy13784 198 VNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVN 277 (388)
Q Consensus 198 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (388)
...+....|.+.++.|.|..+.++..+...++..++++..|+++||+|||+.+.........+.. ...
T Consensus 7 ~~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~g~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~-~~~----------- 74 (368)
T TIGR00903 7 WVTFSPVLSLVAEDIDVSKEELGLLAITYPAAFLALTIPSGLLLDRAFKRWFLFGSLATFAAAAG-RLL----------- 74 (368)
T ss_pred HHHHHhhHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH-HHH-----------
Confidence 34566677888889999999999999999999999999999999999998876544433333322 111
Q ss_pred ccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHH
Q psy13784 278 FEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFY 356 (388)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~ 356 (388)
...+...+....+..+..... .+.......|.+|+++|++++++.+....+|..+++.+.+.+.+..| ...+.+.
T Consensus 75 ---~~~~~~~l~~~R~l~G~g~~~-~~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~ 150 (368)
T TIGR00903 75 ---DPFNYEWLLACQLLAALGQPF-LLNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPI 150 (368)
T ss_pred ---HhccHHHHHHHHHHHHhHhHH-HHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHH
Confidence 001222333333333322222 23344566899999999999999999999999999999999998888 6677776
Q ss_pred HHHHHHHHHHhheeccCCC
Q psy13784 357 GLVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~ 375 (388)
+++.++..++.+..+||++
T Consensus 151 ~~l~~~~~~~~~~~lp~~p 169 (368)
T TIGR00903 151 AAVAAAGIILVLAALPALP 169 (368)
T ss_pred HHHHHHHHHHHHHHcCCCC
Confidence 7777777766667777754
|
This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix. |
| >TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial | Back alignment and domain information |
|---|
Probab=99.40 E-value=8.1e-12 Score=115.04 Aligned_cols=156 Identities=13% Similarity=0.095 Sum_probs=118.7
Q ss_pred HhhhHHHHHHHHHHHHHH---cCCCCCcHHHHHHHHHHHHHHHHHhhheeecc-cCCchHHHHhhHHHHHHHHHHHHHhh
Q psy13784 194 QFSAVNVILAYMTDFVRS---SGFHLLNPYFITVIGGLIIFASVISISFILPH-TGVKPLSAASGMGIALSMLVIGTYLL 269 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~---~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 269 (388)
.-.+++....+.|.|+++ +|++..+++.......++..++.+++|+++|| +|||+.+..+..+..++.+.+.+
T Consensus 22 ~~~~~~~~~~~L~~yl~~~~~lg~s~~~ag~~~~~~~~~~~~~~~~~G~laDr~~G~~~~l~~~~~~~~~g~~~~~~--- 98 (475)
T TIGR00924 22 ERFSYYGMQGILAVYLVQQAGLGFSQEQAFIIFGAYSALVYLLTSVGWWFGDRVWGTKKTMVLGGIVLMLGHFMLAM--- 98 (475)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh---
Confidence 334467778888888864 68999999999999999999999999999999 89999999999998888877765
Q ss_pred cccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhh---HHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q psy13784 270 FEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEV---KGVAAGLATCLAYIFGFFAVKTWPTLHL 346 (388)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~---r~~~~~~~~~~~~~g~~~~~~~~g~l~~ 346 (388)
.++.+....... ..+.......+...++..|.+|+++ |+++.++.+...++|..++|.+.+++.+
T Consensus 99 -----------~~~~~~~~~~~~-l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~ 166 (475)
T TIGR00924 99 -----------SIYPDLIFYGLG-TIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAE 166 (475)
T ss_pred -----------cccHhHHHHHHH-HHHhccccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222222 2233333345666788889988754 8889999999999999999999999999
Q ss_pred hcc-cchhhHHHHHHHHHH
Q psy13784 347 ALG-NGIFFFYGLVAAIGT 364 (388)
Q Consensus 347 ~~g-~~~~~~~~~~~~~~~ 364 (388)
..+ ...+...++..+++.
T Consensus 167 ~~g~~~~f~~~~~~~~~~~ 185 (475)
T TIGR00924 167 NYGYHVGFNLAAVGMVIGL 185 (475)
T ss_pred hcChHHHHHHHHHHHHHHH
Confidence 888 666666554444443
|
The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.7e-14 Score=130.74 Aligned_cols=303 Identities=13% Similarity=0.107 Sum_probs=3.0
Q ss_pred hhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHHHHHHHHHHHhHH-----------------
Q psy13784 30 ITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLL----------------- 92 (388)
Q Consensus 30 ~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~----------------- 92 (388)
+..++++.++.|+|....++...+|+-| ..++++-+...|+..+...+|.++|.++++.+
T Consensus 141 ~~~f~~gq~l~GiG~~pl~tLG~tYiDD---nv~~~~splYiGi~~~~~~lGPa~Gf~lg~~~L~~yvD~~~~~~~~~~i 217 (539)
T PF03137_consen 141 FYVFILGQLLIGIGATPLYTLGITYIDD---NVSKKNSPLYIGILYAMSILGPALGFLLGSFCLRIYVDFPKVPPDGVGI 217 (539)
T ss_dssp -----------SSS------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhccccCCccceeeeecc---ccccccCccchhhhhHHhhccHHHHHHHHHHHHhceeCCccccccCCCC
Confidence 4568889999999999999999999999 99999999999999999999999999998876
Q ss_pred ---------hHHHHHHHhHHHHHHHHHHHHhccCCC-chHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccccccccc
Q psy13784 93 ---------RYRKVAAMAAIFSALGTILITFIIPES-PAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQG 162 (388)
Q Consensus 93 ---------~w~~~f~~~~~~~~~~~~~~~~~~pes-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
.|..-|++.+...++..+..+. +|+. |+.. +..++.+...++... .+.++....++.+...+.
T Consensus 218 ~p~dp~WvGAWWLGfli~g~~~~l~aipl~~-FPk~lp~~~---~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 290 (539)
T PF03137_consen 218 TPSDPRWVGAWWLGFLICGILLFLSAIPLFF-FPKKLPGTS---ERQEEKESSERKEED---SDKDSFKDPKSKKSFGKS 290 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCCCccHHHHHHHHHHHHHHHHHHHHHHHHc-CCccCCCcc---cccchhhhhhcchhh---hhhhcccccccccchhhh
Confidence 2666677777777777666666 5543 2210 000000000000000 000000000000001111
Q ss_pred cccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHH-HHHHHHHhhhee
Q psy13784 163 EQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGL-IIFASVISISFI 240 (388)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l 240 (388)
.+.-.+..+++++||.+.. ..+...........+.+|.|.|++ +++.++.++..+.....+ +..+|.+++|++
T Consensus 291 ~~df~~~l~~Ll~Np~f~~-----~~la~~~~~~~~~G~~tF~pKylE~QF~~sas~A~~l~G~v~ip~~~~G~llGG~i 365 (539)
T PF03137_consen 291 IKDFPKALKRLLTNPVFMC-----LILAGVFESFIVSGFATFLPKYLESQFGLSASQASLLTGIVSIPGAALGILLGGYI 365 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHHHHHHHHhcChHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhhhcchhheehheEEEE
Confidence 2223345566666665433 223333344446778899999998 668888887777655554 677888999999
Q ss_pred ecccC--CchHHHHhhHHHHHHHHHHHHHh--hcccCc-------c-------c--c-----------------c---cc
Q psy13784 241 LPHTG--VKPLSAASGMGIALSMLVIGTYL--LFEKAP-------I-------V--N-----------------F---EW 280 (388)
Q Consensus 241 ~d~~g--~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-------~-------~--~-----------------~---~~ 280 (388)
.+|++ .|+......+...++.+...... .-++.. . . + . ..
T Consensus 366 vkk~kl~~~~~~~~~~v~~~v~~~~~~~~~~~~C~~~~~aGv~~~y~~~~~~~~~~~~~~~Cn~~~~~~~~~a~~G~C~~ 445 (539)
T PF03137_consen 366 VKKFKLSARGAAKFCIVVSIVSVILYSPLFFLGCPNPPIAGVTVPYHNSTSSSPSCNLTCSCNSCCSSGNGSATPGKCPS 445 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred EEEecCcHHHHHHHHHHHHHHHHHHHHHHHeecCCCCceeeecCccccccCCCCCCCCCCCCCCccCCCcccccCCCcCc
Confidence 99875 44555444444444444311111 111100 0 0 0 0 00
Q ss_pred c-ccchHHH-HHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHH-HHHHHHHHHhHHHHhhc
Q psy13784 281 G-FFNLIPL-AALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAY-IFGFFAVKTWPTLHLAL 348 (388)
Q Consensus 281 ~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~-~g~~~~~~~~g~l~~~~ 348 (388)
. ......+ +...+..........|.. ...-..+|+++|+.+.|+...+.+ +|.+-+|.++|.+.|..
T Consensus 446 ~C~~~~~~Fl~~~~~~~~~~~~~~~p~~-~i~LR~V~~~~rs~AlGv~~~~~rllg~IPgPIifG~iiD~t 515 (539)
T PF03137_consen 446 DCCNKLIPFLILLFILSFFTFMSQVPST-LITLRCVPPEQRSFALGVQWLIIRLLGFIPGPIIFGAIIDST 515 (539)
T ss_dssp -----------------------------------------------------------------------
T ss_pred ccccccHHHHHHHHHHHHHHHhcccchh-eeeeccCChhhcchhhhHHHHHHHhhcCcchHHHHhHHHhhh
Confidence 1 1112222 222222333333333444 556688899999999999998877 57799999999999874
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >PRK11043 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-11 Score=110.37 Aligned_cols=155 Identities=12% Similarity=-0.109 Sum_probs=112.4
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccc
Q psy13784 201 ILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEW 280 (388)
Q Consensus 201 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (388)
+....|.+.++.|.++.+.+.......++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 25 ~~p~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~------------- 91 (401)
T PRK11043 25 YLPAFKAIQADLQTSASAVSASLSLFLAGFALGQLLWGPLSDRYGRKPVLLAGLSLFALGSLGMLWV------------- 91 (401)
T ss_pred HHhhHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCcHHHHHHHHHHHHHHHHHHHh-------------
Confidence 3333444566789999999999999999999999999999999999999988887777776665441
Q ss_pred cccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHH
Q psy13784 281 GFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLV 359 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~ 359 (388)
++.+..... .+..+.......+.......|.+|+++++...+..+....++..++|.+.+.+.+..+ ...+++.+.+
T Consensus 92 -~~~~~l~~~-~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~ 169 (401)
T PRK11043 92 -ESAAQLLVL-RFVQAVGVCSAAVIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAI 169 (401)
T ss_pred -cCHHHHHHH-HHHHHhhhHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 122222222 2222222222224445778899999999999999999999999999999999999888 6667666666
Q ss_pred HHHHHHHhhee
Q psy13784 360 AAIGTAHVLAY 370 (388)
Q Consensus 360 ~~~~~~~~~~~ 370 (388)
.++..+.....
T Consensus 170 ~~~~~~~~~~~ 180 (401)
T PRK11043 170 TLLLILPTLRL 180 (401)
T ss_pred HHHHHHHHHHc
Confidence 66655544433
|
|
| >PRK15034 nitrate/nitrite transport protein NarU; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.8e-11 Score=106.87 Aligned_cols=181 Identities=14% Similarity=0.103 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHH
Q psy13784 183 LIIISLFFLFQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSM 261 (388)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~ 261 (388)
.+....+.+...+.....+....+.+-+ ++|+|..+.+....+..+...+.++..|++.||+|.|+.+..+..+..+..
T Consensus 35 ~l~~s~~~f~~~F~~w~~~~~l~~~~~~~~~~ls~~q~g~l~ai~~l~~al~rip~G~l~Dr~G~R~v~~~~~ll~~i~~ 114 (462)
T PRK15034 35 NLWISVSCLLLAFCVWMLFSAVTVNLNKIGFNFTTDQLFLLTALPSVSGALLRVPYSFMVPIFGGRRWTVFSTAILIIPC 114 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence 3333334444444444444455555555 689999999999999999999999999999999999999988888887777
Q ss_pred HHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy13784 262 LVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTW 341 (388)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~ 341 (388)
+...+..... .+++..+....+..+..+. ..+.....+++.+|+++||++.|+....+++|..+++.+.
T Consensus 115 ~~~~~a~~~~----------~~s~~~lli~r~l~Gigg~-~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~ 183 (462)
T PRK15034 115 VWLGIAVQNP----------NTPFGIFIVIALLCGFAGA-NFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVA 183 (462)
T ss_pred HHHHHHHccc----------CCCHHHHHHHHHHHHHHHH-hHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHH
Confidence 7665421100 1123333333333333333 3466668899999999999999999877888887777666
Q ss_pred HHHH-----hhcc--------------cchhhHHHHHHHHHHHHhheeccCC
Q psy13784 342 PTLH-----LALG--------------NGIFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 342 g~l~-----~~~g--------------~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
+.+. +..| +...++...+.++..++.++..++.
T Consensus 184 p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~i~~~~~~~~~ 235 (462)
T PRK15034 184 PLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIATIAAWSGMNDI 235 (462)
T ss_pred HHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Confidence 6544 2222 2334455555556665555555543
|
|
| >TIGR00712 glpT glycerol-3-phosphate transporter | Back alignment and domain information |
|---|
Probab=99.38 E-value=1e-11 Score=113.69 Aligned_cols=162 Identities=14% Similarity=-0.003 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccc
Q psy13784 201 ILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEW 280 (388)
Q Consensus 201 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (388)
+....|.+. +.|+++.+.++......++..++.++.|+++||+|||+.+..+..+.+++.+.+......
T Consensus 46 ~~~~~p~~~-~~g~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~~~~~~~~~~~~~~~~~~~~~~~~~---------- 114 (438)
T TIGR00712 46 FALAMPYLV-EQGFSKGELGFALSAISIAYGFSKFIMGSVSDRSNPRVFLPAGLILSAAVMLLMGFVPWA---------- 114 (438)
T ss_pred HHhhhHHHH-HcCCCHhHhHHHHHHHHHHHHHhhhccchhhhccCCceehHHHHHHHHHHHHHHhccccc----------
Confidence 344556554 459999999999999999999999999999999999998888877777776665431000
Q ss_pred cccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-cc-cchhhHHHH
Q psy13784 281 GFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA-LG-NGIFFFYGL 358 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~-~g-~~~~~~~~~ 358 (388)
..+........+..+.......+.....+.|.+|+++|++++++.++...+++.+++.+.+...+. .+ ...+++.++
T Consensus 115 -~~~~~~l~~~~~l~g~~~g~~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~ 193 (438)
T TIGR00712 115 -TSSIAIMFVLLFLNGWFQGMGWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAI 193 (438)
T ss_pred -cchHHHHHHHHHHHHHHhhcchHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 011222222222223322223355557888999999999999999999999999999887765553 45 566777677
Q ss_pred HHHHHHHHhheeccCC
Q psy13784 359 VAAIGTAHVLAYLPET 374 (388)
Q Consensus 359 ~~~~~~~~~~~~~~~~ 374 (388)
++++..+..++..||+
T Consensus 194 ~~~i~~~~~~~~~~~~ 209 (438)
T TIGR00712 194 CAIIVALFAFAMMRDT 209 (438)
T ss_pred HHHHHHHHHHHhccCC
Confidence 7666665555555553
|
This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar. |
| >PRK05122 major facilitator superfamily transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.3e-11 Score=109.14 Aligned_cols=160 Identities=17% Similarity=-0.010 Sum_probs=112.1
Q ss_pred HhhhHHHHHHHHHHHH-HHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhccc
Q psy13784 194 QFSAVNVILAYMTDFV-RSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEK 272 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (388)
...+........|.+. ++.|.|..+.+.......+...+++++.|+++||+|||+.+..+.....++.+.+.......+
T Consensus 27 ~~~~~~~~~~~l~~~i~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~ 106 (399)
T PRK05122 27 SYLTIGLPLAVLPGYVHDQLGFSAFLAGLVISLQYLATLLSRPHAGRYADTLGPKKAVVFGLCGCALSGLLYLLAGLLAA 106 (399)
T ss_pred HHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHhchhhHhHHhccCCcchHHHHHHHHHHHHHHHHHhhhhhc
Confidence 3333455666777665 567999999999999999999999999999999999999999988877766555433211110
Q ss_pred CccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cc
Q psy13784 273 APIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NG 351 (388)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~ 351 (388)
. .......+....+..+.......+....+..|.+|+++|+++.++......+|..+++.+.+.+.+..| ..
T Consensus 107 ~-------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~ 179 (399)
T PRK05122 107 W-------PVLSLLLLLLGRLLLGIGESLAGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAG 179 (399)
T ss_pred c-------chhHHHHHHHHHHHHHhhHHhhcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHH
Confidence 0 001122222233333333333445666778899999999999999999899999999999999988888 44
Q ss_pred hhhHHHHHH
Q psy13784 352 IFFFYGLVA 360 (388)
Q Consensus 352 ~~~~~~~~~ 360 (388)
.+++...+.
T Consensus 180 ~~~~~~~~~ 188 (399)
T PRK05122 180 LGLLIMLLA 188 (399)
T ss_pred HHHHHHHHH
Confidence 444444433
|
|
| >PRK12382 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-11 Score=110.00 Aligned_cols=146 Identities=15% Similarity=-0.023 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHH-HHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccc
Q psy13784 198 VNVILAYMTDFV-RSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIV 276 (388)
Q Consensus 198 ~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (388)
........|.+. +++|.|..+.+.......+...+++++.|+++||+|||+.+..+.....++.+...........
T Consensus 31 ~~~~~p~l~~~l~~~lg~s~~~~g~~~s~~~~~~~i~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~--- 107 (392)
T PRK12382 31 VGLPLPVIPLFVHHDLGFGNTMVGIAVGIQFLATVLTRGYAGRLADQYGAKRSALQGMLACGLAGLAYLLAAILPVS--- 107 (392)
T ss_pred HHHHhhhhhHHHHHhcCCcHHHHHHHHHHHHHHHHHHhhhhhHHHHhhcchHHHHHHHHHHHHHHHHHHhhhccccc---
Confidence 444555666555 5779999999999999999999999999999999999999988877666554433221111000
Q ss_pred cccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhccc
Q psy13784 277 NFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGN 350 (388)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~ 350 (388)
...+...+....+..+.......+...++..|.+|+++|++++++.......+..++|.+.+.+.+..|+
T Consensus 108 ----~~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~ 177 (392)
T PRK12382 108 ----APFKFALLVVGRLILGFGESQLLTGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGF 177 (392)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccCh
Confidence 0112222233233333332333355557788999999999999999999999999999999998888783
|
|
| >PRK10207 dipeptide/tripeptide permease B; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-11 Score=111.88 Aligned_cols=151 Identities=12% Similarity=0.116 Sum_probs=113.6
Q ss_pred HhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecc-cCCchHHHHhhHHHHHHHHHHHHHhhcc
Q psy13784 194 QFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVISISFILPH-TGVKPLSAASGMGIALSMLVIGTYLLFE 271 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (388)
.-.+++.+..+.+.|++ ++|++..+..+....+.....+..+++|+++|| +|||+++..+..+..++.+.+.+.
T Consensus 26 er~~~y~~~~~l~~yl~~~lg~~~~~a~~i~~~~~~~~~~~~~~~G~laDr~~G~r~~~~~g~~~~~~g~~~~~~~---- 101 (489)
T PRK10207 26 ERFGYYGVQGILAVFFVKQLGFSQEQAFITFGAFAALVYGLISIGGYVGDHLLGTKRTIVLGAIVLAIGYFMTGMS---- 101 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhhHHHhhhhccchHHHHHHHHHHHHHHHHHHHHh----
Confidence 33446777777777775 579988888888888887888888899999999 999999999999999998887651
Q ss_pred cCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchh--hHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 272 KAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPME--VKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~--~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
......+.......+.......|...+++.|.+|++ +|+.++++.+...++|..++|.+.|++.++.|
T Consensus 102 ----------~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~g 171 (489)
T PRK10207 102 ----------LLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFG 171 (489)
T ss_pred ----------ccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 111112222223333333445567779999999887 45788999999999999999999999999999
Q ss_pred -cchhhHHHH
Q psy13784 350 -NGIFFFYGL 358 (388)
Q Consensus 350 -~~~~~~~~~ 358 (388)
+..|++.++
T Consensus 172 w~~~F~i~~i 181 (489)
T PRK10207 172 YSVTYNLCGA 181 (489)
T ss_pred hHHHHHHHHH
Confidence 556655433
|
|
| >TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator) | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.5e-11 Score=107.67 Aligned_cols=138 Identities=18% Similarity=0.121 Sum_probs=104.5
Q ss_pred HhhhHHHHHHHHHH-HHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhccc
Q psy13784 194 QFSAVNVILAYMTD-FVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEK 272 (388)
Q Consensus 194 ~~~~~~~~~~~~~~-~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (388)
.+........+.|. +.++.|+|+.+.++......++..++.++.|+++||+|||+.+..+..+..++.+.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~i~~~~~~~~----- 87 (366)
T TIGR00886 13 SFSVWFAFSPLAVQMIKDDLGLSTAQLGNLVAVPVLAGAVLRIILGFLVDKFGPRYTTTLSLLLLAIPCLWAGLA----- 87 (366)
T ss_pred HHHHHHHhHHhhhHHHHHHhCCCHHHhhHhhHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----
Confidence 34445667778885 556789999999999999999999999999999999999999999988888887777551
Q ss_pred CccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q psy13784 273 APIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHL 346 (388)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~ 346 (388)
..+...+....+..+...... +....++.|.+|+++|+.+.++.....++|..+++.+.+.+.+
T Consensus 88 ---------~~~~~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~ 151 (366)
T TIGR00886 88 ---------VQSYSVLLLLRLFIGIAGGSF-ASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIG 151 (366)
T ss_pred ---------hhhHHHHHHHHHHHHHhchhh-HhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 102222222233333333223 4456788999999999999999998888888888888777665
|
|
| >PRK11195 lysophospholipid transporter LplT; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.9e-11 Score=108.13 Aligned_cols=155 Identities=11% Similarity=0.008 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccc
Q psy13784 201 ILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEW 280 (388)
Q Consensus 201 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (388)
.....+...++.+.++.+.++......+...+..++.|++.||+|||+++..+..+..++.+.+...
T Consensus 22 ~~~~~~~~~~~~~~s~~~~~~~~~~~~l~~~l~~~~~G~laDr~grr~vl~~~~~~~~~~~~~~~~~------------- 88 (393)
T PRK11195 22 LLFAAIALLKELHYPDWSQPLLQMFFVLAYIVLAPFVGAFADSFPKGRVMFIANGIKLLGCLLMLFG------------- 88 (393)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhHhhhccCCchhhHHHHHHHHHHHHHHHHH-------------
Confidence 3444455566778878888999999999999999999999999999999999988887776655431
Q ss_pred cccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhHHHHHH
Q psy13784 281 GFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGIFFFYGLVA 360 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 360 (388)
.+ . . ...+..+.......|...+++.|.+|+++|++++|+.+....++..+||.+.|.+.+......+.+.+...
T Consensus 89 -~~-~--~-~~r~l~G~~~a~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~ 163 (393)
T PRK11195 89 -IH-P--L-LAYGLVGIGAAAYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIY 163 (393)
T ss_pred -HH-H--H-HHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01 1 1 22233444445556888899999999999999999999999999999999999998864233333333332
Q ss_pred HHHHHHhheeccCC
Q psy13784 361 AIGTAHVLAYLPET 374 (388)
Q Consensus 361 ~~~~~~~~~~~~~~ 374 (388)
+++ .+....+||.
T Consensus 164 ~~~-~~~~~~l~~~ 176 (393)
T PRK11195 164 LLA-ALFNLFIPRL 176 (393)
T ss_pred HHH-HHHHhcCCCC
Confidence 323 2334455654
|
|
| >PRK03633 putative MFS family transporter protein; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=4.8e-11 Score=107.33 Aligned_cols=142 Identities=8% Similarity=-0.098 Sum_probs=109.5
Q ss_pred HHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhccc
Q psy13784 193 QQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEK 272 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (388)
.............|.+.++.|.|..+.+.......++..+++++.|+++||+|||+.+..+.....++......
T Consensus 17 ~~~~~~~~~~~~lp~~~~~~~~s~~~~G~~~s~~~l~~~~~~~~~g~l~dr~g~k~~~~~~~~~~~~~~~~~~~------ 90 (381)
T PRK03633 17 LLTLAIAVLNTLVPLWLAQEHLPTWQVGVVSSSYFTGNLVGTLLAGYVIKRIGFNRSYYLASLIFAAGCAGLGL------ 90 (381)
T ss_pred HHHHhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------
Confidence 34444566778899999999999999999999999999999999999999999999999988888887776654
Q ss_pred CccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 273 APIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
.++.+.... ..+..+.......+.......+..++++|+++++......++|..++|.+.+.+.+...
T Consensus 91 --------~~~~~~l~~-~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~ 158 (381)
T PRK03633 91 --------MVGFWSWLA-WRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSKVSTELM 158 (381)
T ss_pred --------hccHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 112233333 33333333333335444566788888999999999999999999999999998766543
|
|
| >TIGR00890 2A0111 Oxalate/Formate Antiporter | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.3e-12 Score=112.06 Aligned_cols=159 Identities=11% Similarity=0.018 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccc
Q psy13784 198 VNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVN 277 (388)
Q Consensus 198 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (388)
.+......|.+.+++|.|..+.+.......++..++.++.|+++||+|||+.+..+..+..++.+.....
T Consensus 19 ~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~d~~G~r~~~~~~~~~~~~~~~~~~~~---------- 88 (377)
T TIGR00890 19 VYTWTLLAPPLGRYFGVGVTAVAIWFTLLLIGLAMSMPVGGLLADKFGPRAVAMLGGILYGLGFTFYAIA---------- 88 (377)
T ss_pred HhhhhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHcCccchhHHhHHHHHHHHHHHHHH----------
Confidence 3456677888888899999999999999999999999999999999999999999888888888776551
Q ss_pred ccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHH
Q psy13784 278 FEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFY 356 (388)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~ 356 (388)
++.+.......+.+.+.+ ...+.......|.+| ++|+.+.++......+|..+++.+.+.+.+..+ ...+.+.
T Consensus 89 ----~~~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~ 162 (377)
T TIGR00890 89 ----DSLAALYLTYGLASAGVG-IAYGIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYM 162 (377)
T ss_pred ----HHHHHHHHHHHHHhHHHH-HHHHhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHH
Confidence 122323233222222222 222344456677777 469999999999999999887777777777777 6677777
Q ss_pred HHHHHHHHHHhheecc
Q psy13784 357 GLVAAIGTAHVLAYLP 372 (388)
Q Consensus 357 ~~~~~~~~~~~~~~~~ 372 (388)
+++.++..+..+...+
T Consensus 163 ~~~~~~~~~~~~~~~~ 178 (377)
T TIGR00890 163 GIIFLLVIVLGAFLIG 178 (377)
T ss_pred HHHHHHHHHHHHHhee
Confidence 7766666555444443
|
|
| >TIGR00892 2A0113 monocarboxylate transporter 1 | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.1e-11 Score=110.87 Aligned_cols=157 Identities=15% Similarity=0.114 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccc
Q psy13784 199 NVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNF 278 (388)
Q Consensus 199 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (388)
..+..+.|.+.++.|.+..+.++......+...++.++.|+++||+|||+.+..+..+..++.+.+...
T Consensus 36 ~~~~~~~~~i~~~~g~s~~~~~~~~s~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~----------- 104 (455)
T TIGR00892 36 KAVTVFFKELQQIFQATYSETAWISSIMLAVLYAGGPISSILVNRFGCRPVVIAGGLLASLGMILASFS----------- 104 (455)
T ss_pred cchhhhHHHHHHHhCcchhHHHHHHHHHHHHHHHhhHHHHHHHHHcCchHHHHhhHHHHHHHHHHHHHh-----------
Confidence 345667788888889998999999988888889999999999999999999988887777777666441
Q ss_pred cccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHH
Q psy13784 279 EWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYG 357 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~ 357 (388)
.+.+.......+..+.......+.......+.+| ++|+++.|+.+....+|..++|.+.+.+.+..| ...+++.+
T Consensus 105 ---~~~~~l~~~~~~l~G~~~~~~~~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~ 180 (455)
T TIGR00892 105 ---SNVIELYLTAGFITGLGLAFNFQPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILG 180 (455)
T ss_pred ---hhHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHH
Confidence 1122222222122221111122344466778786 679999999999999999999999999999889 67777777
Q ss_pred HHHHHHHHHhhee
Q psy13784 358 LVAAIGTAHVLAY 370 (388)
Q Consensus 358 ~~~~~~~~~~~~~ 370 (388)
++.+++.+..++.
T Consensus 181 ~~~~~~~v~~~~~ 193 (455)
T TIGR00892 181 GLLLHCCVCGALM 193 (455)
T ss_pred HHHHHHHHHHHHh
Confidence 7666555443333
|
|
| >PRK09584 tppB putative tripeptide transporter permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.33 E-value=6e-11 Score=109.95 Aligned_cols=155 Identities=12% Similarity=0.040 Sum_probs=107.7
Q ss_pred HhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecc-cCCchHHHHhhHHHHHHHHHHHHHhhcc
Q psy13784 194 QFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVISISFILPH-TGVKPLSAASGMGIALSMLVIGTYLLFE 271 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (388)
...+++.+..+.+.+++ ++|++..++...............+++|+++|| +|||+.+..+..+..++..++.+.
T Consensus 33 ~~~~~y~~~~~l~~yl~~~lg~s~~~a~~~~~~~~~~~~~~~~~~G~LaDr~~G~r~~~~~g~~~~~ig~~l~~~~---- 108 (500)
T PRK09584 33 ERFGYYGLQGIMAVYLVKQLGMSEADSITLFSSFSALVYGLVAIGGWLGDKVLGTKRVIMLGAIVLAIGYALVAWS---- 108 (500)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----
Confidence 33445667778888874 679988777777766665555556789999999 599999999998888887766541
Q ss_pred cCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhh--HHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 272 KAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEV--KGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
......+.......+.......+...++..|.+|++. |..+.++.+...++|..++|.+.|++.+..|
T Consensus 109 ----------~~~~~~l~~~~~l~gig~g~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g 178 (500)
T PRK09584 109 ----------GHDAGIVYMGMATIAVGNGLFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYG 178 (500)
T ss_pred ----------cccHHHHHHHHHHHHHhhhcccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 1112222222222233333344666688999998643 4567888899999999999999999999888
Q ss_pred -cchhhHHHHHHHH
Q psy13784 350 -NGIFFFYGLVAAI 362 (388)
Q Consensus 350 -~~~~~~~~~~~~~ 362 (388)
...|.+.++...+
T Consensus 179 ~~~~F~i~~i~~~i 192 (500)
T PRK09584 179 WSVAFALSVVGMLI 192 (500)
T ss_pred HHHHHHHHHHHHHH
Confidence 6666665543333
|
|
| >KOG1330|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.7e-12 Score=112.60 Aligned_cols=170 Identities=9% Similarity=0.014 Sum_probs=137.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccc
Q psy13784 199 NVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNF 278 (388)
Q Consensus 199 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (388)
+.+..-.+..-+.++.++...+++.....+...+.+++.|++.||+.|++++.++..+..++.+..++.
T Consensus 50 ~~iagv~~~v~~~fni~~s~~Gll~~vf~v~~~i~sPl~gyLadryNR~~v~~vG~~iW~~Av~~~~fs----------- 118 (493)
T KOG1330|consen 50 YTIAGVLKEVQTYFNISDSELGLLQTVFIVVFMIASPLFGYLADRYNRKRVIAVGIFIWTLAVFASGFS----------- 118 (493)
T ss_pred hhhhhhhHHHHHhcCCCchhccchhHHHHHHHHHHHHHHHHHHhhcCcceEEeeHHHHHHHHHHHHHHH-----------
Confidence 333333344444558889999999999999999999999999999999999999999999998888772
Q ss_pred cccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc--cchhhHH
Q psy13784 279 EWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG--NGIFFFY 356 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~ 356 (388)
...+.+++.-.+.+..-..+.|+..++++|.+|.++|++.+++.+.+..+|+.+|-.+...+.+..+ ...+...
T Consensus 119 ----~~Fwq~~l~R~~vGiGeAs~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~ 194 (493)
T KOG1330|consen 119 ----NHFWQVLLCRGFVGIGEASYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGS 194 (493)
T ss_pred ----HHHHHHHHHHHHhccchhhhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEee
Confidence 3344455555555555666779999999999999999999999999999999999888888777777 6788889
Q ss_pred HHHHHHHHHHhheeccCCCCCCHHHHH
Q psy13784 357 GLVAAIGTAHVLAYLPETKGKSLEEII 383 (388)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 383 (388)
+++.++..++..++.+|.+++..++.+
T Consensus 195 avl~vi~~~L~~~f~~eP~rga~~~~~ 221 (493)
T KOG1330|consen 195 AVLGVIVGLLVFLFVREPERGARDEVD 221 (493)
T ss_pred hHHHHHHHHHHHhhccCcccccccccc
Confidence 999999998888888887765544443
|
|
| >cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.3e-11 Score=106.27 Aligned_cols=155 Identities=14% Similarity=0.096 Sum_probs=121.6
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcc
Q psy13784 196 SAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPI 275 (388)
Q Consensus 196 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (388)
..........|.+.++.|.++.+.+.......+...++.++.|++.||+|||+.+..+.....++.+.....
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~d~~g~r~~~~~~~~~~~~~~~~~~~~-------- 84 (352)
T cd06174 13 LDRGLLSPALPLLAEDLGLSASQAGLIVSAFSLGYALGSLLAGYLSDRFGRRRVLLLGLLLFALGSLLLAFA-------- 84 (352)
T ss_pred HhhhhhHhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCchhhHHHHHHHHHHHHHHHHh--------
Confidence 335666777888888889999999999999999999999999999999999999999988888888877551
Q ss_pred ccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhh
Q psy13784 276 VNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFF 354 (388)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~ 354 (388)
.+...........+.......+....+..|.+|+++|++..++.+....+|..++|.+.+.+.+..+ ...+.
T Consensus 85 -------~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 157 (352)
T cd06174 85 -------SSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFL 157 (352)
T ss_pred -------ccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 1222333333333333344456777899999999999999999999999999999999999998887 55566
Q ss_pred HHHHHHHHHHH
Q psy13784 355 FYGLVAAIGTA 365 (388)
Q Consensus 355 ~~~~~~~~~~~ 365 (388)
+.+...++..+
T Consensus 158 ~~~~~~~~~~~ 168 (352)
T cd06174 158 ILAILGLLLAL 168 (352)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3 |
| >TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-11 Score=113.34 Aligned_cols=150 Identities=11% Similarity=-0.030 Sum_probs=114.7
Q ss_pred HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHH
Q psy13784 211 SSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAA 290 (388)
Q Consensus 211 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (388)
+.+++..+.+.......++..++.++.|++.||+|+|+.+..+.++..++.++..... .........
T Consensus 70 ~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~-------------~~~~~~l~~ 136 (465)
T TIGR00894 70 NFKWSGALQGLILSSHFYGQIIIQIPVGYLAGKYVFKWSIGIGMFLSSVISIVIPWAA-------------GGGIALVVF 136 (465)
T ss_pred CCCCCHHHhhHHHHHHHHHHHHHHcchHHHHHHhCcchhhHHHHHHHHHHHHHHHHHH-------------HcCchHHHH
Confidence 4577788889999999999999999999999999999999888877777666553310 111223344
Q ss_pred HHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc-c-cchhhHHHHHHHHHHHHhh
Q psy13784 291 LVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL-G-NGIFFFYGLVAAIGTAHVL 368 (388)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g-~~~~~~~~~~~~~~~~~~~ 368 (388)
..+..+.......+....+..|.+|+++|+++.|+.+....+|..+++.+.+.+.+.. + ...+.+.+++.++..++.+
T Consensus 137 ~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~ 216 (465)
T TIGR00894 137 CRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWF 216 (465)
T ss_pred HHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHH
Confidence 4445555555556777789999999999999999999999999999999999998884 8 7777777777666655444
Q ss_pred eeccC
Q psy13784 369 AYLPE 373 (388)
Q Consensus 369 ~~~~~ 373 (388)
...++
T Consensus 217 ~~~~~ 221 (465)
T TIGR00894 217 VFPAD 221 (465)
T ss_pred HHhcC
Confidence 44433
|
|
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.5e-11 Score=111.47 Aligned_cols=314 Identities=13% Similarity=0.177 Sum_probs=180.3
Q ss_pred chhHHHHHHHHHHHHHHHHHhh----cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHHH
Q psy13784 6 RKPAIILIGIVGIIGWLLITYS----LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAFG 81 (388)
Q Consensus 6 rr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G 81 (388)
||+-++++.++..++.+..+.. .+.....+.-++..+|.......+.+++.|..+.-|.+ ||...+.......+|
T Consensus 58 r~~Y~~i~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~la~~g~a~~DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G 136 (433)
T PF03092_consen 58 RKPYMIIGWLLGAVSALVLALLPASESSAAIAVVLLFLASFGYAFADVAADALVVELARREPES-RGDLQSFVWGVRSVG 136 (433)
T ss_pred chHHHHHHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHHHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHH
Confidence 4445666777776666655554 35667777778889999999999999999832223444 888888888889999
Q ss_pred HHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcccccc
Q psy13784 82 LLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAE 157 (388)
Q Consensus 82 ~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (388)
.+++..+++.+ ++|..|.+.+++..+..+..++..+|.++ +.+ ++... . .+++.+
T Consensus 137 ~lv~~~l~G~l~~~~~~~~~f~i~~~~~~l~~~~~~~~~~e~~~----~~~-~~~~~----~------------~~~~~~ 195 (433)
T PF03092_consen 137 SLVGSLLSGPLLDSFGPQGVFLISAALPLLMLIVALFLLEERKV----RPA-DEVFS----F------------GKEEVP 195 (433)
T ss_pred HHHHHHhhhhhhhcCCCeEEehHHHHHHHHHHHHHHHhhhhccc----ccc-chhhc----c------------cccccc
Confidence 99999888877 88999999888888777777775665211 000 00000 0 000000
Q ss_pred ccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC---CCCCcHHHHHHHHHHHHHHHH
Q psy13784 158 SGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSG---FHLLNPYFITVIGGLIIFASV 234 (388)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~s~~~~~~~~~~~~~~~~~~~ 234 (388)
......++.....++.++.+..++..+...+++............++.. ...+ +++...+....+..++.++|.
T Consensus 196 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~fy~~~---~~~~gp~fs~~f~~~~~~vg~~~~l~g~ 272 (433)
T PF03092_consen 196 CLFGSFREQLSELWRALQQRAIWQPILFFIFFFNLPPSISSASSFYFQT---DALGGPHFSPSFYGTLSIVGSIASLLGI 272 (433)
T ss_pred hhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCCCccEEEEEe---ccccccccCHHHHHHHHHHHHHHHHHHH
Confidence 0000012233445666666665555441111111100000000011111 1223 666666666666667777777
Q ss_pred HhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCC
Q psy13784 235 ISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIF 314 (388)
Q Consensus 235 ~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (388)
.+......+..-|+++....++..+..+.-.+.....+. .....+. +..+.-..+........+.|.. .+.+|+.
T Consensus 273 ~~y~~~~~~~~~R~~~~~t~~~~~~~~l~~~~lv~~~n~---~~Gi~d~-~f~lgd~~l~~~~~~i~~mP~l-vl~a~lc 347 (433)
T PF03092_consen 273 LLYRKYFSNWSWRRIFVVTTLVSVLASLFDLLLVTRWNL---DLGIPDQ-WFALGDTILEEVIGMIAFMPSL-VLAARLC 347 (433)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHhcccEEEEEEEee---eeCcCCe-EEEEEhHHHHHHHHHHHHHHHH-HHHHHHC
Confidence 776665555666666655554443332221111000000 0000111 2222233334444444454555 7899999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 315 PMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 315 p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
|+...|+.+++..++.++|..++..+...+.+..+
T Consensus 348 P~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~ 382 (433)
T PF03092_consen 348 PKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFG 382 (433)
T ss_pred CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999998887665
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR00887 2A0109 phosphate:H+ symporter | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.9e-10 Score=107.30 Aligned_cols=121 Identities=8% Similarity=-0.035 Sum_probs=89.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHH
Q psy13784 216 LLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNL 295 (388)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (388)
+.+.+.......++..++.++.|++.||+|||+.+..+.++..++.++..... +. ........+....+..
T Consensus 55 ~~~~~~~~~~~~ig~~ig~~~~g~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~---~~------~~~~~~~~~~~~r~l~ 125 (502)
T TIGR00887 55 SSVSAAVNGSASIGTLAGQLFFGWLADKLGRKRVYGMELIIMIIATVASGLSP---GS------SPKSVMATLCFWRFWL 125 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcc---Cc------ccchHHHHHHHHHHHH
Confidence 44567888888999999999999999999999999888888887777665411 00 0001122333333444
Q ss_pred HHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy13784 296 VASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLH 345 (388)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~ 345 (388)
+....+..+....+..|.+|++.|+++.++.+....+|..+++.+...+.
T Consensus 126 G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~ 175 (502)
T TIGR00887 126 GVGIGGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVL 175 (502)
T ss_pred HHHHhhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444445777799999999999999999999999999999988877654
|
This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083). |
| >TIGR00899 2A0120 sugar efflux transporter | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.8e-11 Score=106.21 Aligned_cols=163 Identities=11% Similarity=-0.008 Sum_probs=111.5
Q ss_pred HHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHH-hhHHHHHHHHHHHHHhhcccCcc
Q psy13784 198 VNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAA-SGMGIALSMLVIGTYLLFEKAPI 275 (388)
Q Consensus 198 ~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 275 (388)
........|.+++ +.|.|..+.+.......+...+.+++.|+++||+|||+.+.. +.....++.++...
T Consensus 13 ~~~~~~~l~~~l~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~--------- 83 (375)
T TIGR00899 13 GALQFPTLSLFLSEEVRARPAMIGLFYTGSAIVGIAVSQLLATRSDYQGDRKGLILFCCLLAALACLLFAW--------- 83 (375)
T ss_pred HHHHhhHHHHHHHcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHHHHh---------
Confidence 4555566666664 679999999999999999999999999999999999887554 44444444444433
Q ss_pred ccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHH--HHHHHHHHHHHHHHHHHHhHHHHhhcc-cch
Q psy13784 276 VNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVA--AGLATCLAYIFGFFAVKTWPTLHLALG-NGI 352 (388)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~--~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~ 352 (388)
.++.+..+.. ....+.......|....+..|..|++.|+.+ .+.......+|..++|.+.+.+.+..+ ...
T Consensus 84 -----~~~~~~l~~~-~~~~g~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~ 157 (375)
T TIGR00899 84 -----NRNYFLLLVL-GVLLSSFASTANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVM 157 (375)
T ss_pred -----cchHHHHHHH-HHHHHhhhhhhHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHH
Confidence 1122222222 2222223333446666777788887777654 577788888999999999999988888 667
Q ss_pred hhHHHHHHHHHHHHhheeccCCC
Q psy13784 353 FFFYGLVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~ 375 (388)
+++.+...++..++.++.+||.+
T Consensus 158 f~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T TIGR00899 158 FLTAALAFVLCGVLVWLFLPSYP 180 (375)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcc
Confidence 77777776666665555566543
|
This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria. |
| >PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-10 Score=107.02 Aligned_cols=182 Identities=15% Similarity=0.037 Sum_probs=125.8
Q ss_pred hhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHH
Q psy13784 171 FKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLS 250 (388)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~ 250 (388)
+..+|+|.++............ ......-.+.+..+..-|+...+.......+-.++.++++|.+.||++||+++
T Consensus 4 ~aplr~~~Fr~lw~a~~iS~lG-----~~~~~va~~wlv~~lt~S~~~valv~~a~~LP~~Llsl~aG~laDr~drrril 78 (524)
T PF05977_consen 4 FAPLRNRNFRRLWIAQLISNLG-----DWMQTVALAWLVTQLTGSPLMVALVQAASTLPILLLSLFAGALADRFDRRRIL 78 (524)
T ss_pred cccccCchHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHH
Confidence 4567777766544433333222 22222223333334455567778888888888899999999999999999999
Q ss_pred HHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHH
Q psy13784 251 AASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLA 330 (388)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~ 330 (388)
+.+.....+..+.+.+....+.. +.+..+.. .+..+.......|..++.++|++|+++...++++.+...
T Consensus 79 i~~~~~~~~~~~~L~~l~~~~~~---------~~~~Ll~~-~fl~g~~~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~ 148 (524)
T PF05977_consen 79 ILSQLLRALVALLLAVLAFFGLL---------SPWLLLIL-TFLLGIGSAFFNPAWQAIIPELVPKEDLPAANALNSISF 148 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcC---------CHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHH
Confidence 99888877666666554433321 33443333 333444444456888899999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHh
Q psy13784 331 YIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHV 367 (388)
Q Consensus 331 ~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~ 367 (388)
++...+||.++|.+....| ...+.+-++..++.....
T Consensus 149 niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~~l 186 (524)
T PF05977_consen 149 NIARIIGPALGGILVAFFGAAAAFLINALSFLISILAL 186 (524)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999 666666655544444333
|
EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function []. |
| >TIGR00879 SP MFS transporter, sugar porter (SP) family | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.1e-11 Score=110.05 Aligned_cols=146 Identities=14% Similarity=0.014 Sum_probs=103.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHH
Q psy13784 216 LLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNL 295 (388)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (388)
..+.+.......++..++.++.|+++||+|||+.+..+..+..++.++..... . ....+..++. ..+.
T Consensus 70 ~~~~~~~~~~~~~~~~i~~~~~g~l~d~~grr~~~~~~~~~~~~~~~~~~~~~---~--------~~~~~~~~~~-r~l~ 137 (481)
T TIGR00879 70 SSLWGLVVSIFLVGGFIGALFAGWLSDRFGRKKSLLIIALLFVIGAILMGLAA---F--------ALSVEMLIVG-RVLL 137 (481)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhc---c--------ccchHHHHHH-HHHH
Confidence 78899999999999999999999999999999999888888877777764411 0 0111223333 3333
Q ss_pred HHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHh---HHHHhhcc-cchhhHHHHHHHHHHHHhheec
Q psy13784 296 VASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTW---PTLHLALG-NGIFFFYGLVAAIGTAHVLAYL 371 (388)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~---g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~ 371 (388)
+.......+....++.|.+|+++|+.+.++.+....+|..+++.+. +...+..+ ...+++.+...++ .++...++
T Consensus 138 G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~-~~~~~~~l 216 (481)
T TIGR00879 138 GIGVGIASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGL-LFLGLFFL 216 (481)
T ss_pred HhhhhHHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHH-HHHHHhcC
Confidence 3333334466678999999999999999999999999999999988 44444555 4455554433333 33344556
Q ss_pred cCC
Q psy13784 372 PET 374 (388)
Q Consensus 372 ~~~ 374 (388)
||+
T Consensus 217 ~~~ 219 (481)
T TIGR00879 217 PES 219 (481)
T ss_pred CCC
Confidence 664
|
This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) |
| >PRK09705 cynX putative cyanate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=9.3e-11 Score=105.80 Aligned_cols=145 Identities=14% Similarity=0.051 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccc
Q psy13784 199 NVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNF 278 (388)
Q Consensus 199 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (388)
.......|.+.+++|.|..+.++..+...++..++.++.|++.||+|||+++..+..+.+++.+...+.
T Consensus 26 ~~~~~~lp~i~~~~~~s~~~~g~~~s~~~~~~~l~~~~~g~l~dr~G~r~~l~~~~~l~~~~~~~~~~a----------- 94 (393)
T PRK09705 26 TSVGPLLPQLRQASGMSFSVAALLTALPVVTMGGLALAGSWLHQHVSERRSVAISLLLIAVGALMRELY----------- 94 (393)
T ss_pred hccchhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhhHHHHHHhCchHHHHHHHHHHHHHHHHHHHC-----------
Confidence 445677888888899999999999999999999999999999999999999999999999999988761
Q ss_pred cccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc-c-cchhhHH
Q psy13784 279 EWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL-G-NGIFFFY 356 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-g-~~~~~~~ 356 (388)
+++..+....+..+.......+.......|.+| ++|+.+++........|..+++.+.+.+.++. + ...+.+.
T Consensus 95 ----~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~ 169 (393)
T PRK09705 95 ----PQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWW 169 (393)
T ss_pred ----cchHHHHHHHHHHHhHHHHHhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 222233333444433333444566677888887 67999999999999999999999999988875 4 3334333
Q ss_pred HHH
Q psy13784 357 GLV 359 (388)
Q Consensus 357 ~~~ 359 (388)
+..
T Consensus 170 ~~~ 172 (393)
T PRK09705 170 ALP 172 (393)
T ss_pred HHH
Confidence 333
|
|
| >PRK09556 uhpT sugar phosphate antiporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.4e-11 Score=111.27 Aligned_cols=161 Identities=17% Similarity=-0.002 Sum_probs=115.5
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccc
Q psy13784 201 ILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEW 280 (388)
Q Consensus 201 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (388)
+....|.+.+++|.+..+.++..+...++..++.++.|+++||+|+|+.+..+....++..+.++......
T Consensus 48 ~~~~~~~i~~~~~~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~--------- 118 (467)
T PRK09556 48 FKAAQNDMISTYGLSTTELGMIGLGFSITYGVGKTLVGYYADGKNTKQFLPFLLILSAICMLGFGASLGSG--------- 118 (467)
T ss_pred hhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHhhhhhHhhccCccchHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 44557778888999999999999999999999999999999999999999888877777766665421111
Q ss_pred cccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc---c-cchhhHH
Q psy13784 281 GFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL---G-NGIFFFY 356 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~---g-~~~~~~~ 356 (388)
..+...+....+..+.......|....++.|.+|+++|++++|+......+|..+++.+..++.+.. + ...+.+.
T Consensus 119 -~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~ 197 (467)
T PRK09556 119 -SVSLGLMIALWALSGFFQSTGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFP 197 (467)
T ss_pred -cchHHHHHHHHHHHHHHHhccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHH
Confidence 1223333333333343333344777789999999999999999999999999999999887766653 2 3345555
Q ss_pred HHHHHHHHHHhheec
Q psy13784 357 GLVAAIGTAHVLAYL 371 (388)
Q Consensus 357 ~~~~~~~~~~~~~~~ 371 (388)
+.+.++..++.+++.
T Consensus 198 g~~~~~~~i~~~~~~ 212 (467)
T PRK09556 198 SIIALIIGFIGLRYG 212 (467)
T ss_pred HHHHHHHHHHHHHhC
Confidence 555555444444443
|
|
| >PRK10077 xylE D-xylose transporter XylE; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-10 Score=106.77 Aligned_cols=159 Identities=9% Similarity=-0.118 Sum_probs=108.9
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHH
Q psy13784 213 GFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALV 292 (388)
Q Consensus 213 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (388)
+.+..+.++..+...++..+++++.|+++||+|||+.+..+..+..++.+............ .......+..+...-
T Consensus 51 ~~~~~~~~~~~s~~~ig~~~~~~~~G~l~dr~Grr~~~~~~~~l~~i~~~~~~~~~~~~~~~---~~~~~~~~~~l~~~R 127 (479)
T PRK10077 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISALGSAWPEFGFTSI---GPDNTGYVPEFVIYR 127 (479)
T ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhccccccc---cccchhHHHHHHHHH
Confidence 67778889999999999999999999999999999999998888777766654311000000 000011122333444
Q ss_pred HHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH--------hhcc-cchhhHHHHHHHHH
Q psy13784 293 LNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLH--------LALG-NGIFFFYGLVAAIG 363 (388)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~--------~~~g-~~~~~~~~~~~~~~ 363 (388)
+..+....+..+...+++.|.+|+++|+.++++.+....+|..+++.+.+.+. +..+ +..+++.++..++.
T Consensus 128 ~l~G~~~g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~ 207 (479)
T PRK10077 128 IIGGIGVGLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLF 207 (479)
T ss_pred HHHhhhHhHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHH
Confidence 45555555556777789999999999999999999999999998877665543 2345 44555555555554
Q ss_pred HHHhheeccCCC
Q psy13784 364 TAHVLAYLPETK 375 (388)
Q Consensus 364 ~~~~~~~~~~~~ 375 (388)
.+ ..+++||+.
T Consensus 208 ~~-~~~~l~~s~ 218 (479)
T PRK10077 208 LM-LLYFVPETP 218 (479)
T ss_pred HH-HHHcCCCCc
Confidence 43 345677754
|
|
| >COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-10 Score=99.01 Aligned_cols=165 Identities=15% Similarity=0.085 Sum_probs=120.4
Q ss_pred HhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccC
Q psy13784 194 QFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKA 273 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (388)
.+.....+....+.+-++.|+|+.|.+++..+..+.+.+.+++-|.+.||+|.|+....+.++..+-++...+....
T Consensus 26 ~F~VW~l~s~l~~~i~~~~~LS~~q~~ll~aiPil~GallRl~~g~l~drfGgR~~~~~s~~l~~IP~~~~~~a~~~--- 102 (417)
T COG2223 26 GFMVWTLFSPLGVFIKSDFGLSEGQKGLLVAIPILVGALLRLPYGFLTDRFGGRKWTILSMLLLLIPCLGLAFAVTY--- 102 (417)
T ss_pred HHHHHHHHHHHHhhhccccCCCHHHHHHHHHHHHHHhHHHHHHHHhhhcccCchHHHHHHHHHHHHHHHHHHHHccC---
Confidence 33334444455555557889999999999999999999999999999999999999999888888877777653211
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc----
Q psy13784 274 PIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG---- 349 (388)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g---- 349 (388)
.+...++.+.+..+.. .+...+...++++.+|++++|.++|+.. .+|+|..+...+.+.+....+
T Consensus 103 ---------~~~~~ll~~gll~G~~-GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w 171 (417)
T COG2223 103 ---------PSTWQLLVIGLLLGLA-GASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAW 171 (417)
T ss_pred ---------CchHHHHHHHHHHhcc-cceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHH
Confidence 1112223323333333 3334566689999999999999999999 999999999999999888776
Q ss_pred cchhhHHHHHHHHHHHHhheecc
Q psy13784 350 NGIFFFYGLVAAIGTAHVLAYLP 372 (388)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~ 372 (388)
+....+.....++..++.++...
T Consensus 172 ~~~~~i~~~~l~v~~v~~~~~~~ 194 (417)
T COG2223 172 RNVAGIYVVALAIAAVLAWLGMN 194 (417)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhC
Confidence 34455555556665665555543
|
|
| >TIGR00885 fucP L-fucose:H+ symporter permease | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.3e-10 Score=102.53 Aligned_cols=135 Identities=9% Similarity=-0.040 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccc
Q psy13784 199 NVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNF 278 (388)
Q Consensus 199 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (388)
.......|.+.++.|.+..+.+...+...++..++++..+++.||+|||+.+..+..+.+++.+++.....
T Consensus 20 ~~~~~l~~~~~~~~~~s~~~~g~l~s~~~~g~~i~~~~~g~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~--------- 90 (410)
T TIGR00885 20 DITNPMVPQFQQAFTLTAFQAALVQSAFYGGYFIMAIPAAIFMKKLSYKAGILLGLFLYALGAFLFWPAAE--------- 90 (410)
T ss_pred HhHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHh---------
Confidence 44456778887888999999999999999999999999999999999999999999998888777533110
Q ss_pred cccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy13784 279 EWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLH 345 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~ 345 (388)
.++.+.......+.+.+.+. ..+..+.+..+..|+++|++..++.+...++|..++|.+.+.+.
T Consensus 91 --~~~~~~~l~~~~l~G~g~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~ 154 (410)
T TIGR00885 91 --IMNYTLFLVGLFILTAGLGF-LETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLI 154 (410)
T ss_pred --hccHHHHHHHHHHHHhhHHH-HHhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01122223333333333333 33455578888899999999999999999999999999988875
|
This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector. |
| >TIGR00880 2_A_01_02 Multidrug resistance protein | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.2e-10 Score=88.56 Aligned_cols=134 Identities=19% Similarity=0.127 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhcccc
Q psy13784 225 IGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLP 304 (388)
Q Consensus 225 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (388)
...++..++.+..+++.||+|||+.+..+.....++.+..... .+.+.......+.. .......+
T Consensus 6 ~~~~~~~~~~~~~g~~~d~~g~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~g-~~~~~~~~ 70 (141)
T TIGR00880 6 GYALGQLIYSPLSGLLTDRFGRKPVLLVGLFIFVLSTAMFALS--------------SNITVLIIARFLQG-FGAAFALV 70 (141)
T ss_pred eehhHHHHHHhhHHHHHhhcchhHHHHHHHHHHHHHHHHHHHh--------------ccHHHHHHHHHHHH-HHHHHHHH
Confidence 4467788899999999999999999888877777776665431 12233333333333 33333446
Q ss_pred chhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheeccC
Q psy13784 305 IPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPE 373 (388)
Q Consensus 305 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 373 (388)
..+.+..|.+|+++|+++.++.+....++..++|.+.+.+.+..+ ...+.+.+.+..+..+......||
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 140 (141)
T TIGR00880 71 AGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPE 140 (141)
T ss_pred hHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCC
Confidence 677889999999999999999999999999999999999988877 566777777776666655555554
|
|
| >KOG2615|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.4e-11 Score=101.23 Aligned_cols=144 Identities=15% Similarity=0.077 Sum_probs=108.1
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHH
Q psy13784 215 HLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLN 294 (388)
Q Consensus 215 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (388)
+..-.+.+.+.+++...+.+...|.++||+|||.++..+....++...+.+. ..+...++..-+.
T Consensus 66 ~~~yaGflGSsF~ilQ~~sS~~~G~~SD~yGRkpvll~c~~~va~s~ll~~~---------------S~~F~afv~aR~l 130 (451)
T KOG2615|consen 66 SVFYAGFLGSSFSILQFISSPLWGCLSDRYGRKPVLLACLIGVALSYLLWAL---------------SRNFAAFVLARFL 130 (451)
T ss_pred cchhhhhHhhHHHHHHHHhhhhhhhhhhhhCchHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHh
Confidence 3456788999999999999999999999999999999999988888877766 2333344444556
Q ss_pred HHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHh---hcc-cchhhHHHHHHHHH---HHHh
Q psy13784 295 LVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHL---ALG-NGIFFFYGLVAAIG---TAHV 367 (388)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~---~~g-~~~~~~~~~~~~~~---~~~~ 367 (388)
.+.+..-. .+..++++|++++++|+.+++..+....+|-++||.+.|++.. ..| +..++....+++.. ....
T Consensus 131 ~Gi~kgnl-~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~ 209 (451)
T KOG2615|consen 131 GGIFKGNL-SVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFF 209 (451)
T ss_pred hhhccCch-HHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHH
Confidence 66665544 5666999999999999999999999999999999999999887 555 32222122222221 2334
Q ss_pred heeccCC
Q psy13784 368 LAYLPET 374 (388)
Q Consensus 368 ~~~~~~~ 374 (388)
.+++|||
T Consensus 210 ~~~lpET 216 (451)
T KOG2615|consen 210 PWFLPET 216 (451)
T ss_pred HHhCCcc
Confidence 4667876
|
|
| >TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-09 Score=99.40 Aligned_cols=191 Identities=14% Similarity=0.062 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeec----ccCCchHHHHh-hHHH
Q psy13784 183 LIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILP----HTGVKPLSAAS-GMGI 257 (388)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~~~~-~~~~ 257 (388)
++.........++. +.....+.+.++++.|.+....+.......+.+++..++.|+++| |+|||+.++.. ....
T Consensus 6 li~~~~~~~Giq~~-~~l~~~~l~~yl~~lg~~~~~~~~i~~~~~l~~~i~~Pi~G~lSDr~~sr~GRRrp~il~g~~~~ 84 (477)
T TIGR01301 6 LLRVASVAAGVQFG-WALQLSLLTPYVQELGIPHAWASIIWLCGPLSGLLVQPLVGYLSDRCTSRFGRRRPFIAAGAALV 84 (477)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhHeeehhcCCCCCCCChHHHHHHHHHHH
Confidence 34444455554544 456667777788889999999999999999999999999999999 59999988765 4444
Q ss_pred HHHHHHHHHHhhcccCccccccccccc---hHHHHHHHHHHHHHHhccccchhhhhccCCchhhH--HHHHHHHHHHHHH
Q psy13784 258 ALSMLVIGTYLLFEKAPIVNFEWGFFN---LIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVK--GVAAGLATCLAYI 332 (388)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r--~~~~~~~~~~~~~ 332 (388)
.+++.++.........-..+....... +..+....+.....+... +...+++.|..|+++| +.+.++.+...++
T Consensus 85 ~~~l~ll~~~~~~~~~~~~~~~~~~~~~~i~~~~i~~~lld~~~n~~~-~p~rALiaDl~p~~~~~~~~a~~~~~~~~~l 163 (477)
T TIGR01301 85 AFAVILIGFAADIGHLFGDNLDKKTKPRAIIVFVVGFWILDVANNMLQ-GPCRAFLADLTGGDARRTRIANAYFSFFMAI 163 (477)
T ss_pred HHHHHHHHhCchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHHH-HHHHHhcccccCchhHHHHHHHHHHHHHHHH
Confidence 444444433110000000000000011 122222223333444333 3345899999998865 5799999999999
Q ss_pred HHHHHHHHhHHH--Hhhc-------------c-cchhhHHHHHHHHHHHHhheeccCCC
Q psy13784 333 FGFFAVKTWPTL--HLAL-------------G-NGIFFFYGLVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 333 g~~~~~~~~g~l--~~~~-------------g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (388)
|+.+++.+.+.. .+.. + ...|.+.+++.+++.++..+..+|..
T Consensus 164 G~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~t~~~v~E~~ 222 (477)
T TIGR01301 164 GNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYIALSAVKENP 222 (477)
T ss_pred HHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHHHeeeeeccC
Confidence 999999988864 2221 2 34567777777777777777777754
|
This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot. |
| >PRK15075 citrate-proton symporter; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=7.1e-10 Score=101.53 Aligned_cols=148 Identities=14% Similarity=-0.109 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHH-HHH-----HHHHHHHHHhhheeecccCCchHHHHhhHH
Q psy13784 183 LIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFIT-VIG-----GLIIFASVISISFILPHTGVKPLSAASGMG 256 (388)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~-~~~-----~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~ 256 (388)
......+..+........+....|.+.++++.++.+.+... ... .+...+++++.|++.||+|||+.+..+...
T Consensus 16 ~~~~~~~~~~~~~~d~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ig~~~~G~l~Dr~Grr~~l~~~~~~ 95 (434)
T PRK15075 16 AILRVTSGNFLEMFDFFLFGFYATAIAKTFFPAGNEFASLMLTFAVFGAGFLMRPLGAIVLGAYIDRVGRRKGLIVTLSI 95 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHhhhhchHHHHHHHHHH
Confidence 34444455555555667788888988888888766643332 111 222346788999999999999999999988
Q ss_pred HHHHHHHHHHHhhcccCccccccccccchH-------HHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHH
Q psy13784 257 IALSMLVIGTYLLFEKAPIVNFEWGFFNLI-------PLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCL 329 (388)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~ 329 (388)
..++.+++.+. ++.+. .+....+..+.......+....+..|.+|+++|+++.++....
T Consensus 96 ~~~~~~l~~~~--------------~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~ 161 (434)
T PRK15075 96 MASGTLLIAFV--------------PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTSWQSAS 161 (434)
T ss_pred HHHHHHHHHhC--------------CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHHHHHHH
Confidence 88888877651 11110 1222223333333333455568899999999999999999998
Q ss_pred HHHHHHHHHHHhHHH
Q psy13784 330 AYIFGFFAVKTWPTL 344 (388)
Q Consensus 330 ~~~g~~~~~~~~g~l 344 (388)
.+++..+++.+.+.+
T Consensus 162 ~~~g~~~g~~~g~~l 176 (434)
T PRK15075 162 QQVAVVFAALLGYLL 176 (434)
T ss_pred HHHHHHHHHHHHHHH
Confidence 888888888777665
|
|
| >TIGR00806 rfc RFC reduced folate carrier | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.5e-10 Score=97.65 Aligned_cols=133 Identities=9% Similarity=-0.012 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHcCCCCCc-HHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccc
Q psy13784 200 VILAYMTDFVRSSGFHLLN-PYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNF 278 (388)
Q Consensus 200 ~~~~~~~~~~~~~g~s~~~-~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (388)
....-.|.+.++.|++..+ .+.+......+..+..+++|+++||+|.|+.+..+.+...+..++.++.
T Consensus 44 n~s~a~p~L~~elglT~~qv~G~I~s~F~ysYal~qIp~GlLaDrlG~K~vL~l~~l~Wsl~t~L~~fa----------- 112 (511)
T TIGR00806 44 GESFITPYLLTVLNFTEETVTNEIIPVLPYSHLAVLVPVFLLTDYLRYKPVLVLQALSFVCVWLLLLLG----------- 112 (511)
T ss_pred hHHHHHHHHHHHcCCCHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHH-----------
Confidence 3455566666788999998 9999999999999999999999999999999999998888888888761
Q ss_pred cccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 279 EWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
.....+...-+..+....+.. ..+.++...+|+++|+++.|+.+....+|.++++++.+. ....|
T Consensus 113 ----~Sl~~L~i~R~llGvaEA~~~-A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~ql-l~s~g 177 (511)
T TIGR00806 113 ----TSVWHMQLMEVFYSVTMAARI-AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQL-LVTLG 177 (511)
T ss_pred ----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhcC
Confidence 223333344444444444444 666899999999999999999999999999999999999 55566
|
Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined. |
| >PRK10406 alpha-ketoglutarate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=100.05 Aligned_cols=174 Identities=17% Similarity=-0.011 Sum_probs=107.4
Q ss_pred HhhhHHHHHHHHHHHHHHcC---CCCCcH---HHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHH
Q psy13784 194 QFSAVNVILAYMTDFVRSSG---FHLLNP---YFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTY 267 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~g---~s~~~~---~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~ 267 (388)
.......+....|.+.++.+ .+..+. +.......++..+++++.|+++||+|||+.+..+.....++.+..++.
T Consensus 34 ~~~d~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~ 113 (432)
T PRK10406 34 EWFDFYVYSFCSLYFAHIFFPSGNTTTQLLQTAGVFAAGFLMRPIGGWLFGRIADKHGRKKSMLISVCMMCFGSLVIACL 113 (432)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhhc
Confidence 33444556666666666654 333322 233344455566999999999999999999999999988888877651
Q ss_pred hhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHh-
Q psy13784 268 LLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHL- 346 (388)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~- 346 (388)
..... ........+...-+..+....+..+...+++.|.+|+++|+...++.......|..+++.+...+..
T Consensus 114 ~~~~~-------~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~ 186 (432)
T PRK10406 114 PGYET-------IGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQT 186 (432)
T ss_pred CCchh-------HHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 10000 0000112233344445544445567778999999999999999998888777787777766554432
Q ss_pred -------hcc-cchhhHHHHHHHHHHHHhheeccCCC
Q psy13784 347 -------ALG-NGIFFFYGLVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 347 -------~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (388)
..| ...|++.++..++. ++.....||++
T Consensus 187 ~~~~~~~~~gWr~~F~i~~~~~ll~-~~~~~~~~e~~ 222 (432)
T PRK10406 187 LEDAELREWGWRIPFALGAVLAVVA-LWLRRQLDETS 222 (432)
T ss_pred CCHHHHhccchHHHHHHHHHHHHHH-HHHHhcCCCCc
Confidence 456 44555544444433 33334455543
|
|
| >PRK09528 lacY galactoside permease; Reviewed | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.2e-10 Score=101.11 Aligned_cols=165 Identities=12% Similarity=0.010 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccc
Q psy13784 198 VNVILAYMTDFVRS-SGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIV 276 (388)
Q Consensus 198 ~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (388)
......+.|.++++ .|+|+.+.+...+...+...+++++.|+++||+|||+.+..+..+..+............
T Consensus 26 ~~~~~~~~~~~l~~~~g~s~~~~g~~~s~~~l~~~i~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~----- 100 (420)
T PRK09528 26 WSSWFSFFPIWLHDINGLSGTDTGIIFSANSLFALLFQPLYGLISDKLGLKKHLLWIISGLLVLFGPFFIYVFAP----- 100 (420)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 45567777777765 799999999999999999999999999999999999988776555443332221100000
Q ss_pred cccccccchHHHHHHHHHHHHHHhccccchhhhhccCCc--hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhh
Q psy13784 277 NFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFP--MEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGIFF 354 (388)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p--~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~ 354 (388)
.................+... +.......+..+ ++.++..+|.......+|..++|.+.+.+.+......++
T Consensus 101 -----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~ 174 (420)
T PRK09528 101 -----LLQYNILLGAIVGGIYLGFGF-LAGAGAIEAYIERVSRRSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFW 174 (420)
T ss_pred -----HHHHHHHHHHHHHHHHhhhhh-ccchhhhhhHHHHHHhhccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHH
Confidence 000000111111111111111 111112222222 234566788888899999999999999987752266677
Q ss_pred HHHHHHHHHHHHhheeccC
Q psy13784 355 FYGLVAAIGTAHVLAYLPE 373 (388)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~ 373 (388)
..++..++..++.+...++
T Consensus 175 ~~~~~~~~~~~~~~~~~~~ 193 (420)
T PRK09528 175 LGSGSALILLVLLFFAKPD 193 (420)
T ss_pred HHHHHHHHHHHHHhccccc
Confidence 6666666655554444433
|
|
| >TIGR00805 oat sodium-independent organic anion transporter | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.8e-10 Score=108.02 Aligned_cols=158 Identities=8% Similarity=-0.054 Sum_probs=116.2
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhh
Q psy13784 190 FLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLL 269 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~ 269 (388)
..+.+.........-.+.+-+++++++.+.+++.+...++..++.++.+++.||.+||+.+.++.++++++.+++++.-.
T Consensus 41 ~~~~~~~~~g~~~~~l~~iek~F~lss~~~G~i~s~~~i~~~~~~i~v~~~~~r~~r~~~i~~g~ll~~lg~ll~alphf 120 (633)
T TIGR00805 41 AQLQGLLYNGLVNSSLTTIERRFKLSTSSSGLINGSYEIGNLLLIIFVSYFGTKLHRPIVIGIGCAIMGLGSFLLSLPHF 120 (633)
T ss_pred HHHHHHHHHHHHHhhchhhhhhhCCCCCcceeeeehhhHHHHHHHHHHHHhhcccCcceEEEecHHHHHHHHHHHhChHH
Confidence 33434333344455566666788999999999999999999999999999999999999999999999999988865321
Q ss_pred cccCccc--------------------c------------ccc--c--ccchHHHHHHHHHHHHHHhccccchhhhhccC
Q psy13784 270 FEKAPIV--------------------N------------FEW--G--FFNLIPLAALVLNLVASSVGFLPIPYLMLGEI 313 (388)
Q Consensus 270 ~~~~~~~--------------------~------------~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (388)
....... + ... . ...+..++..-++.+.......+...+++.|.
T Consensus 121 ~~~~y~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~GiG~~~~~~~~~~~i~d~ 200 (633)
T TIGR00805 121 LSGRYSYSTTVSSTGNLSSANSFLCMENLTQALRPTQCPSECQKQHKESLMWLLFLVSQLLRGIGATPIFPLGISYIDDF 200 (633)
T ss_pred hcCCccccccccccccccccccccccCCCCCCccccccccccccccCCCceehhhHHHHHHHhccCCcchhcCchhhhcc
Confidence 1100000 0 000 0 11233444455555555556667788999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy13784 314 FPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA 347 (388)
Q Consensus 314 ~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 347 (388)
+|+++|+...|+.+....+|..+|+.+.+.+.+.
T Consensus 201 ~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~ 234 (633)
T TIGR00805 201 AKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQI 234 (633)
T ss_pred CCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 9999999999999999999999999999988764
|
Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange. |
| >KOG3764|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=6.9e-11 Score=100.69 Aligned_cols=151 Identities=15% Similarity=0.022 Sum_probs=126.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHH
Q psy13784 213 GFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALV 292 (388)
Q Consensus 213 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (388)
+-+..+.+.++....+.+++.+++.|.+.||+|+|..+.++...+..+.+++++ ...+......-
T Consensus 102 ~~e~~~iG~LFaskA~~qllvnp~~G~l~~~iGy~ipm~~Gl~vmf~sTilFaf---------------g~sy~~l~vAR 166 (464)
T KOG3764|consen 102 DRENTQIGLLFASKALVQLLVNPFFGNLIDRIGYKIPMVAGLFVMFLSTILFAF---------------GNSYPMLFVAR 166 (464)
T ss_pred cccccchhHHHHHHHHHHHHhcccchhhHHHhccccHHHHHHHHHHHHHHHHHH---------------cchhHHHHHHH
Confidence 445778999999999999999999999999999999999999999999999987 23333444555
Q ss_pred HHHHHHHhccccchhhhhccCCchhh-HHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhhee
Q psy13784 293 LNLVASSVGFLPIPYLMLGEIFPMEV-KGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAY 370 (388)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~p~~~-r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 370 (388)
...+...........+++++.+|++. |++++|+.-.+..+|-.+||.+.|.+++..| ..+|.+.+.++++...+.++.
T Consensus 167 ~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v 246 (464)
T KOG3764|consen 167 SLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV 246 (464)
T ss_pred HHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence 55555555555666799999999875 6999999999999999999999999999999 999999999999988877776
Q ss_pred ccCCCCCC
Q psy13784 371 LPETKGKS 378 (388)
Q Consensus 371 ~~~~~~~~ 378 (388)
++.++.++
T Consensus 247 i~p~~~~~ 254 (464)
T KOG3764|consen 247 IEPTEMDP 254 (464)
T ss_pred eCccccCc
Confidence 66544433
|
|
| >TIGR00889 2A0110 nucleoside transporter | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-10 Score=104.75 Aligned_cols=117 Identities=15% Similarity=0.271 Sum_probs=101.1
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhc----chhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHH-
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSL----TITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWAT- 75 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~- 75 (388)
+||+|||+++..+.++.+++..+..... +++.+++.+++.|++.+...+....++.| ++|+++|+++.++.+
T Consensus 275 ~dr~g~r~~l~~~~~~~~v~~~l~~~~~~~~~~~~~l~l~~~l~g~~~~~~~~~~~~~i~~---~~p~~~~g~~~g~~~~ 351 (418)
T TIGR00889 275 LKRFGIKKVMLLSLVAWALRFGFFAYGDPEYFGYALLFLSMIVYGCAFDFFNISGSVFVEK---EVPVHIRASAQGLFTL 351 (418)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHH
Confidence 4999999999999999988877776642 24567788999999999888888899999 999999999999997
Q ss_pred HHHHHHHHHHHHHHhHH----------hHHHHHHHhHHHHHHHHHHHHhccCCCc
Q psy13784 76 TARAFGLLQVYFMGSLL----------RYRKVAAMAAIFSALGTILITFIIPESP 120 (388)
Q Consensus 76 ~~~~~G~~~~~~~~~~~----------~w~~~f~~~~~~~~~~~~~~~~~~pesp 120 (388)
...++|..++|.+++.+ ||+..|.+.+++.++..++.++++||+.
T Consensus 352 ~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~~ 406 (418)
T TIGR00889 352 MCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYSH 406 (418)
T ss_pred HHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 67889999999999877 2899999999998888888888888863
|
This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli. |
| >PRK10133 L-fucose transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.4e-09 Score=97.86 Aligned_cols=136 Identities=12% Similarity=-0.022 Sum_probs=102.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccc
Q psy13784 198 VNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVN 277 (388)
Q Consensus 198 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (388)
........|.+.+++|.|+.+.+.......++..++.++.|++.||+|||+.+..+..+..++.+++.....
T Consensus 42 ~~~~~~~~p~i~~~~~~s~~~~gl~~~~~~~g~~i~~~~~g~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~-------- 113 (438)
T PRK10133 42 NNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE-------- 113 (438)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 456677788887788999999999999999999999999999999999999999999998888876532110
Q ss_pred ccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy13784 278 FEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLH 345 (388)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~ 345 (388)
.+++..+....+..+.......+..+.++.|..|++.|...+++.+....+|..+++.+.+.+.
T Consensus 114 ----a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g~~l~ 177 (438)
T PRK10133 114 ----IMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_pred ----cCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223333333333333333334555677778877777777899999999999999998877654
|
|
| >PRK11902 ampG muropeptide transporter; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-09 Score=98.42 Aligned_cols=166 Identities=13% Similarity=0.121 Sum_probs=117.2
Q ss_pred HhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeeccc-----CCch-HHHHhhHHHHHHHHHHHHH
Q psy13784 194 QFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHT-----GVKP-LSAASGMGIALSMLVIGTY 267 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~-~~~~~~~~~~~~~~~~~~~ 267 (388)
+.........-.|.++++.|+|.++.+........ .+..++.|+++||+ |||| .+..+....+++...+.+.
T Consensus 11 ~~~~~~~~~~~~~~~l~~~g~~~~~ig~~~~~~~~--~~~~~l~g~~~Dr~~~~~~g~rr~~l~~~~~~~~l~~~~l~~~ 88 (402)
T PRK11902 11 SGLPLALTSGTLQAWMTVEGLDIQTIGFFSLVGQA--YIFKFLWAPLMDRYTPPLLGRRRGWLLLTQVGLAASIAAMAFC 88 (402)
T ss_pred HhhhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--HHHHHHHHHHHHcccccCCCcchhHHHHHHHHHHHHHHHHHhc
Confidence 44445667788899999999999999988666655 68889999999999 7765 5677677776666665441
Q ss_pred hhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy13784 268 LLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA 347 (388)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 347 (388)
. .......+....+....+.....+...+++.|.+|+++|+++.++......+|..+++.+.+.+.+.
T Consensus 89 ---~---------~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~ 156 (402)
T PRK11902 89 ---P---------PHAALWPLAGLAVLVAFLSASQDIVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADR 156 (402)
T ss_pred ---C---------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhc
Confidence 0 1112222232222233444445577779999999999999999999999999999999999988885
Q ss_pred c-c-cchhhHHHHHHHHHHHHhheeccCC
Q psy13784 348 L-G-NGIFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 348 ~-g-~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
. | ...+++.+++.++..+. ....||+
T Consensus 157 ~~gw~~~f~i~a~~~l~~~l~-~~~~~e~ 184 (402)
T PRK11902 157 VLGWGNTYLLMAGLMLAGALT-TLWAPEP 184 (402)
T ss_pred ccCHHHHHHHHHHHHHHHHHH-HHhcCCC
Confidence 4 6 56666666666554443 3445554
|
|
| >PTZ00207 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.2e-09 Score=99.59 Aligned_cols=163 Identities=12% Similarity=0.042 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccc
Q psy13784 198 VNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVN 277 (388)
Q Consensus 198 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (388)
.+.+..+.+.+.+++|+|..+.+...... .......++.|++.||+|+|+++.++.+...++.++.++......
T Consensus 43 ~y~fsv~s~~L~~~lgls~~~l~~i~svg-~~~g~~~lp~G~L~Dr~G~R~vllig~ll~~iG~ll~ala~~~~i----- 116 (591)
T PTZ00207 43 MYAFNLISGAMQARYNLTQRDLSTITTVG-IAVGYFLLPYSFIYDYLGPRPIFVLSMTVFCLGTLLFALTFQEVI----- 116 (591)
T ss_pred HHHHHHHHHHHHHHhCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHhcccc-----
Confidence 45667788888888899888887776653 333456667899999999999999999999999988876211000
Q ss_pred ccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHH
Q psy13784 278 FEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFY 356 (388)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~ 356 (388)
..+.+...+... ..+.......+.....+.+.+| ++||.+.|+......+|+.+.+.+...+.. .+ ...+++.
T Consensus 117 ---~~s~~~l~l~r~-l~G~G~~~~~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~-~~~~~~fl~l 190 (591)
T PTZ00207 117 ---EGSVVRLSVYNG-LMTLGCMLFDLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFS-DNTSAYFFFL 190 (591)
T ss_pred ---cCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHHHHHHHH
Confidence 012222222222 2222222233444466778887 569999999999999999865444444343 23 4555666
Q ss_pred HHHHHHHHHHhheecc
Q psy13784 357 GLVAAIGTAHVLAYLP 372 (388)
Q Consensus 357 ~~~~~~~~~~~~~~~~ 372 (388)
+.+.++..++.+.+++
T Consensus 191 ~vl~~vv~ll~~~~vr 206 (591)
T PTZ00207 191 MSFALVVGILAIVFMR 206 (591)
T ss_pred HHHHHHHHHHHHhhee
Confidence 6666655554444443
|
|
| >PRK15011 sugar efflux transporter B; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.1e-09 Score=97.08 Aligned_cols=162 Identities=9% Similarity=-0.040 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHH-HHcCCCCCcHHHHHHHHHH-HHHHHHHhhheeecccCCchHHH-HhhHHHHHHHHHHHHHhhcccCc
Q psy13784 198 VNVILAYMTDFV-RSSGFHLLNPYFITVIGGL-IIFASVISISFILPHTGVKPLSA-ASGMGIALSMLVIGTYLLFEKAP 274 (388)
Q Consensus 198 ~~~~~~~~~~~~-~~~g~s~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 274 (388)
........|.++ +++|.|..+.+.......+ ....+.+.+++ .||+|||+.+. .+.....++.....+
T Consensus 31 ~~~~~p~~~~~l~~~~~~s~~~~g~~~~~~~~~~~~~~~~~~~~-~dr~g~r~~~~~~~~~~~~~~~~~~~~-------- 101 (393)
T PRK15011 31 GALQTPTLSIFLTDEVHARPAMVGFFFTGSAVIGILVSQFLAGR-SDKRGDRKSLIVFCCLLGVLACTLFAW-------- 101 (393)
T ss_pred HHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccchhHHHHHHHHHHHHHHHHHHH--------
Confidence 344556666665 4679988888888766555 45555555666 99999988754 444444444444333
Q ss_pred cccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhH--HHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cc
Q psy13784 275 IVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVK--GVAAGLATCLAYIFGFFAVKTWPTLHLALG-NG 351 (388)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r--~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~ 351 (388)
.++.+.......+..+. .....|....+..|..+++.| +...++.+....+|..++|.+.+.+.++.| ..
T Consensus 102 ------~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~ 174 (393)
T PRK15011 102 ------NRNYFVLLFVGVFLSSF-GSTANPQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTV 174 (393)
T ss_pred ------hhHHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHH
Confidence 11222222222222322 233446666666776665544 344578888889999999999999999889 66
Q ss_pred hhhHHHHHHHHHHHHhheeccCCC
Q psy13784 352 IFFFYGLVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~~~ 375 (388)
.++..+...++..++.+...||.+
T Consensus 175 ~f~~~~~~~~~~~~~~~~~~~~~~ 198 (393)
T PRK15011 175 MYLSAAVAFIVCGVMVWLFLPSMR 198 (393)
T ss_pred HHHHHHHHHHHHHHHHHhhcCccC
Confidence 677777777666666666667653
|
|
| >TIGR00898 2A0119 cation transport protein | Back alignment and domain information |
|---|
Probab=99.12 E-value=5e-10 Score=104.75 Aligned_cols=153 Identities=10% Similarity=-0.009 Sum_probs=111.1
Q ss_pred HHHHHHHHcCCC---CCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccc
Q psy13784 204 YMTDFVRSSGFH---LLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEW 280 (388)
Q Consensus 204 ~~~~~~~~~g~s---~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (388)
+.+.+.++.+++ +.+.+...+...++.+++.++.|+++||+|||+.+..+..+..++.+...+
T Consensus 111 ~~~~i~~e~~l~c~~~~~~~~~~s~~~~g~~~g~~~~g~l~Dr~Grr~~~~~~~~~~~i~~~~~~~-------------- 176 (505)
T TIGR00898 111 FSSTIVTEWDLVCEDAWKVDLTQSCFFVGVLLGSFVFGYLSDRFGRKKVLLLSTLVTAVSGVLTAF-------------- 176 (505)
T ss_pred ccccEEEEecceechHHHHHHHHHHHHHHHHHHHHhHHHhhhhccchHHHHHHHHHHHHHHHHHHH--------------
Confidence 445555677887 677889999999999999999999999999999999888888777776654
Q ss_pred cccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhHHHHHH
Q psy13784 281 GFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGIFFFYGLVA 360 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~ 360 (388)
..+...+....++.+....+..+....++.|.+|+++|+.+.++......+|..+++.+...+.++ ...+++.++..
T Consensus 177 -~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~w--r~~~~~~~i~~ 253 (505)
T TIGR00898 177 -SPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDW--RWLQLAVSLPT 253 (505)
T ss_pred -cccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHH
Confidence 122333344444445544555677789999999999999999999888889998888877665441 33344444444
Q ss_pred HHHHHHhheeccCC
Q psy13784 361 AIGTAHVLAYLPET 374 (388)
Q Consensus 361 ~~~~~~~~~~~~~~ 374 (388)
++..+.. +++||+
T Consensus 254 ~~~~~~~-~~~~es 266 (505)
T TIGR00898 254 FLFFLLS-WFVPES 266 (505)
T ss_pred HHHHHHH-HhcCCC
Confidence 4444433 556664
|
|
| >PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.5e-09 Score=107.33 Aligned_cols=145 Identities=12% Similarity=-0.048 Sum_probs=96.2
Q ss_pred cHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHH
Q psy13784 218 NPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVA 297 (388)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (388)
..++......+..++.++++|+++||++||+++........+........... .+...+....++.+.
T Consensus 53 ~~~l~~~~~~l~~~l~~~~~G~laDr~~rk~~~~~~~~~~~~~~~~~~~~~~~------------~s~~~l~~~~~l~gi 120 (1140)
T PRK06814 53 LVTLAGAVFILPFFIFSALAGQLADKYDKAKLAKILKFAEIGIAALAIYGFHL------------NSVPLLFAALFLMGI 120 (1140)
T ss_pred HHHHHHHHHHHHHHHHhhhHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHH------------hhHHHHHHHHHHHHH
Confidence 34566667778889999999999999999997643222221111111111100 123333444444455
Q ss_pred HHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhHHHHHHHHHHHHhheeccCC
Q psy13784 298 SSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGIFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 298 ~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
......|...+++.+.+|+++|+.++|+.++...+|..+||.+.|++.+..++..+++..++..+..++....++++
T Consensus 121 ~~a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (1140)
T PRK06814 121 HSALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKT 197 (1140)
T ss_pred HHHhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 55556688889999999999999999999999999999999999999988884444344444444444444455543
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.08 E-value=7e-09 Score=88.43 Aligned_cols=224 Identities=16% Similarity=0.089 Sum_probs=136.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhh-cccc-cccCchhhhHHHHHHH-HH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYI-AESI-MVQNTKLRGSLATWAT-TA 77 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i-~~~~-~~~~~~~r~~~~~~~~-~~ 77 (388)
+||+|||+.-+..+++.+++++ +-.+++++.++++|++.|++....+.+-.++. .|+- +-+|++..+...+... ..
T Consensus 93 aD~~Grk~~cl~~cily~~scl-~k~~~~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~ 171 (354)
T PF05631_consen 93 ADRYGRKKACLLFCILYSLSCL-TKHSSNYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFG 171 (354)
T ss_pred HHhcCchHHHHHHHHHHHHHHH-HHhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence 5999999999999999999986 56669999999999999999999999888775 3310 0245555555555444 23
Q ss_pred HHHHHHHHHHHHhHH------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCC
Q psy13784 78 RAFGLLQVYFMGSLL------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPT 151 (388)
Q Consensus 78 ~~~G~~~~~~~~~~~------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (388)
.++-.+.+++++..+ |-..+|....+..++..++.....+|.+.- ..+..+
T Consensus 172 n~~vAI~aGv~a~~l~~~~~~g~vaPF~~a~~~l~~~~~~I~~~W~ENyg~---~~~~~~-------------------- 228 (354)
T PF05631_consen 172 NGVVAIGAGVVANVLADWFGFGPVAPFDAAIVLLAVAAVLILKTWPENYGD---TSSSSS-------------------- 228 (354)
T ss_pred hHHHHHHHhHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHhcccccCCC---cccccc--------------------
Confidence 344445555566555 336788888888777777766655664310 000000
Q ss_pred ccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHH
Q psy13784 152 SRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIF 231 (388)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~ 231 (388)
..+.-+..+..+.++|+ .+.....+.+.....+..+..|.|.+-.+ + ....-|.++..+.++.+
T Consensus 229 ----------~~~~~~~a~~~i~~d~r----il~LG~~qslFE~smy~FVflWtPaL~~~-~-~~~P~GlIFssFM~a~M 292 (354)
T PF05631_consen 229 ----------LSGSFREAWRAILSDPR----ILLLGLIQSLFEGSMYLFVFLWTPALDPD-D-EELPLGLIFSSFMVAMM 292 (354)
T ss_pred ----------hHHHHHHHHHHHHcCch----hHHHHHHHHHHHHHHHHheeeeeceecCC-C-CCCCchHHHHHHHHHHH
Confidence 00011122233333443 34455566666666666666777876521 1 13456888888889999
Q ss_pred HHHHhhheee-cccCCchHHHHhhHHHHHHHHHH
Q psy13784 232 ASVISISFIL-PHTGVKPLSAASGMGIALSMLVI 264 (388)
Q Consensus 232 ~~~~~~g~l~-d~~g~~~~~~~~~~~~~~~~~~~ 264 (388)
+|+.+..++. ++......+.....+..+++.+.
T Consensus 293 lGS~lf~~l~s~~~~~e~~l~~v~~~aa~~l~~p 326 (354)
T PF05631_consen 293 LGSSLFSRLLSKSLRPESLLRYVFAVAAVSLAIP 326 (354)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9998886554 44343344444444444444333
|
|
| >TIGR00882 2A0105 oligosaccharide:H+ symporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.4e-09 Score=95.88 Aligned_cols=170 Identities=11% Similarity=-0.034 Sum_probs=105.2
Q ss_pred HhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhccc
Q psy13784 194 QFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEK 272 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (388)
.+.+...+..+.|.+++ +.|.++.+.+.......+...+++++.|+++||+|||+.+..+.....++............
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~l~~~i~~~~~G~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (396)
T TIGR00882 14 YFFIMSAYFPFFPIWLHDVNGLSKTDTGIVFSCISLFSILFQPLFGLISDKLGLKKHLLWIISGLLVLFAPFFIYVFGPL 93 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 33345566667777776 56999999999999999999999999999999999999988766555444333221110000
Q ss_pred CccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cc
Q psy13784 273 APIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NG 351 (388)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~ 351 (388)
. ....+.......+..+.......+....+..|..+ .++...|......++|..++|.+.|.+.+. + ..
T Consensus 94 ~-------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~-~~~~ 163 (396)
T TIGR00882 94 L-------QSNILVGAIVGGLYLGFVFSAGAGAIEAYIEKVSR--NSNFEYGKARMFGCVGWALCASIAGILFSI-DPQI 163 (396)
T ss_pred H-------HHHHHHHHHHHHHHHHHHhccchhhHHHHHHHhhh--hcccccchhhhhcccHHHHHHHHHhhhhcc-CchH
Confidence 0 00111111111122222222223444445444322 234566788888899999999999987654 6 66
Q ss_pred hhhHHHHHHHHHHHHhheeccC
Q psy13784 352 IFFFYGLVAAIGTAHVLAYLPE 373 (388)
Q Consensus 352 ~~~~~~~~~~~~~~~~~~~~~~ 373 (388)
.+++.+.+.++..++.+...++
T Consensus 164 ~f~~~~~~~~~~~~~~~~~~~~ 185 (396)
T TIGR00882 164 VFWLGSGFALILMLLLMFAKPK 185 (396)
T ss_pred HHHHHHHHHHHHHHHHHHhCCC
Confidence 7777777766665544443444
|
|
| >PRK11010 ampG muropeptide transporter; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.1e-09 Score=96.15 Aligned_cols=163 Identities=15% Similarity=0.142 Sum_probs=109.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeeccc-----CCchH-HHHhhHHHHHHHHHHHHHhhc
Q psy13784 197 AVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHT-----GVKPL-SAASGMGIALSMLVIGTYLLF 270 (388)
Q Consensus 197 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~-~~~~~~~~~~~~~~~~~~~~~ 270 (388)
.........|.++++.|.|..+.+..... +.. .++.++.+.++||+ |||+. +..+.+...++...++..
T Consensus 27 ~~~~~~~~l~~~l~~~g~~~~~ig~~~~~-~~~-~~~~~l~gpl~Dr~~~~~~Grrr~~ll~~~i~~~~~~~~~a~~--- 101 (491)
T PRK11010 27 PLALTSGTLQAWMTVENIDLKTIGFFSLV-GQA-YVFKFLWSPLMDRYTPPFLGRRRGWLLATQLLLLVAIAAMGFL--- 101 (491)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHH-HHHHHHHHHHHHcccccCCCCchHHHHHHHHHHHHHHHHHHHc---
Confidence 34556667888888888877777775222 222 26889999999999 98875 556666666666555441
Q ss_pred ccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHh-hcc
Q psy13784 271 EKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHL-ALG 349 (388)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~-~~g 349 (388)
.+ ..+...+....+..+.+.....+...++..|.+|+++|+.+.++......+|..+++.+.+.+.+ ..|
T Consensus 102 ~~---------~~~l~~l~~~~~l~~~~~a~~~i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~G 172 (491)
T PRK11010 102 EP---------GTQLRWLAALAVVIAFCSASQDIVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLG 172 (491)
T ss_pred CC---------cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 11 11222222222233333334456667899999999999999999999999999999999999888 457
Q ss_pred -cchhhHHHHHHHHHHHHhheeccCC
Q psy13784 350 -NGIFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 350 -~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
...+++.++..++..+..+ ..||+
T Consensus 173 Wr~~f~i~a~l~ll~~l~~~-~~~e~ 197 (491)
T PRK11010 173 WQGMYWLMAALLIPCIIATL-LAPEP 197 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHH-hcCCC
Confidence 6677777766666554333 35665
|
|
| >TIGR00896 CynX cyanate transporter | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.4e-09 Score=96.84 Aligned_cols=134 Identities=15% Similarity=0.073 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccc
Q psy13784 199 NVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNF 278 (388)
Q Consensus 199 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (388)
.......|.+.++.|.|..+.++......++..++.++.|++.||+|||+.+..+.....++.+.. . .
T Consensus 17 ~~~~~~lp~l~~~~~~s~~~~g~~~s~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~-~---~-------- 84 (355)
T TIGR00896 17 TSVGPLLPQIRSALGMSFSVAGLLTALPVLCFAVLAPLAPWLARRFGEERSVAAGLLLIAAGILIR-S---A-------- 84 (355)
T ss_pred ccCcccHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCchHHHHHHHHHHHHHHHHH-H---h--------
Confidence 344567788888899999999999999999999999999999999999999988877666655544 2 0
Q ss_pred cccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 279 EWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
++.+..+....+.+.+.+. ..+.......|.+| ++|+++.++.+....+|..+++.+.+.+.+..+
T Consensus 85 ---~~~~~l~~~~~~~g~g~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~ 150 (355)
T TIGR00896 85 ---PGTALLFAGTALIGVGIAI-INVLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSG 150 (355)
T ss_pred ---ccHHHHHHHHHHHHHHHHH-HhccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 1223322222222222222 22344466778776 579999999999999999999999988877654
|
This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate. |
| >PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.07 E-value=1e-08 Score=105.67 Aligned_cols=117 Identities=14% Similarity=0.026 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHH
Q psy13784 219 PYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVAS 298 (388)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (388)
.++..+...+..+++++++|+++||+|||+++..+..+..+..++..+.... .....+.+..++.+..
T Consensus 49 ~~~~~~~~~l~~~l~~~~~G~l~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~------------~~~~~l~~~r~l~G~~ 116 (1146)
T PRK08633 49 TAIVNALFLLPFLLLSSPAGFLADKFSKNRVIRIVKLFEVGLTLLIVLAYYL------------GWFWLAFAVTFLLGAQ 116 (1146)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhcccccHHHHHHHHHHHHHHHHHHHHHHHHH------------ccHHHHHHHHHHHHHH
Confidence 4666777788889999999999999999999988776655555444332111 1223333333344444
Q ss_pred HhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy13784 299 SVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA 347 (388)
Q Consensus 299 ~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 347 (388)
.....+...+++.|.+|+++|+.++|+......+|..+++.+.+.+.+.
T Consensus 117 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~ 165 (1146)
T PRK08633 117 SAIYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFES 165 (1146)
T ss_pred HHhhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445677778999999999999999999999999999999999998876
|
|
| >TIGR00901 2A0125 AmpG-related permease | Back alignment and domain information |
|---|
Probab=99.06 E-value=4e-09 Score=94.03 Aligned_cols=161 Identities=14% Similarity=0.007 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeeccc-----CCchHH-HHhhHHHHHHHHHHHHHhhcccC
Q psy13784 200 VILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHT-----GVKPLS-AASGMGIALSMLVIGTYLLFEKA 273 (388)
Q Consensus 200 ~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-----g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 273 (388)
....-.|.+.++.|+|..+.+..... .+...+ .++.|+++||+ ||||.+ ..+....++....+.+. . +
T Consensus 6 ~~~~~~~~~~~~~g~s~~~~g~~~~~-~~~~~~-~~~~g~~~Dr~~~~~~Grr~~~l~~~~~~~~~~~~~l~~~--~-~- 79 (356)
T TIGR00901 6 LVGNTLPYWLRSKNVSLKTIGFFSLV-GLPYSL-KFLWSPLVDTVYLPFFGRRRSWLVLTQVLLLSLLLILSFL--V-P- 79 (356)
T ss_pred hHHhHHHHHHHHcCCCHHHHHHHHHH-HHHHHH-HHHHHHHHhcccCCCCCccHHHHHHHHHHHHHHHHHHHcC--C-c-
Confidence 34556788888889998888888644 444444 88999999997 788864 45555555554444331 1 1
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc----
Q psy13784 274 PIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG---- 349 (388)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g---- 349 (388)
..+.+... ...+..........+...+++.|.+|+++|+.+.++......+|..+++.+.+.+.+..+
T Consensus 80 -------~~~l~~l~-~~~~~~~~~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~ 151 (356)
T TIGR00901 80 -------STDLPLLA-GLAFLIAFFSATQDIALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTG 151 (356)
T ss_pred -------chhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 01222222 222222333333446667889999999999999999999999999999999998887766
Q ss_pred ----cch-hhHHHHHHHHHHHHhheeccCC
Q psy13784 350 ----NGI-FFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 350 ----~~~-~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
+.. +++.++..++..+...+..||+
T Consensus 152 ~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~ 181 (356)
T TIGR00901 152 LITLWGYIFFWTALLILPGLLVTLFLAKEP 181 (356)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 333 4444444444333333334554
|
|
| >PRK09952 shikimate transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.2e-08 Score=93.39 Aligned_cols=112 Identities=13% Similarity=-0.013 Sum_probs=77.6
Q ss_pred HHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccch
Q psy13784 227 GLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIP 306 (388)
Q Consensus 227 ~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (388)
.++..+++++.|++.||+|||+.+..+..+..++.++.++....... .......+...-+..+....+..+..
T Consensus 74 ~~~~~~g~~~~G~l~Dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~l~~~R~l~G~~~g~~~~~~ 146 (438)
T PRK09952 74 FLFRPLGGVVFGHFGDRLGRKRMLMLTVWMMGIATALIGLLPSFSTI-------GWWAPVLLVTLRAIQGFAVGGEWGGA 146 (438)
T ss_pred HHHHhhHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhcCCcHHHH-------HHHHHHHHHHHHHHHHhhhcccHHHH
Confidence 34566888889999999999999999998888888877661100000 00001123333344444444445666
Q ss_pred hhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy13784 307 YLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLH 345 (388)
Q Consensus 307 ~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~ 345 (388)
..+..|.+|+++|+...+..+....+|..+++.+...+.
T Consensus 147 ~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~ 185 (438)
T PRK09952 147 ALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLIS 185 (438)
T ss_pred HHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999998888888888877766654
|
|
| >PRK11128 putative 3-phenylpropionic acid transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.9e-09 Score=93.85 Aligned_cols=161 Identities=11% Similarity=-0.022 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhH-HHHHHHHHHHHHhhcccCcc
Q psy13784 197 AVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGM-GIALSMLVIGTYLLFEKAPI 275 (388)
Q Consensus 197 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 275 (388)
+......+.|.++++.|.|..+.+.......+...+++++.|++.||+||+........ ...+....+.. .
T Consensus 19 ~~g~~~p~l~~~l~~~g~s~~~iG~~~~~~~l~~~l~~~~~g~l~dr~g~~~~~~~~~~~~~~~~~~~~~~---~----- 90 (382)
T PRK11128 19 AYGVFLPFWSVWLKGQGYTPETIGLLLGAGLVARFLGSLLIAPRVKDPSQLIPALRLLALLTLLFAVAFWF---G----- 90 (382)
T ss_pred HHHHHhhhHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHH---h-----
Confidence 34667778888999999999999999999999999999999999999998532211111 11111111111 0
Q ss_pred ccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhh
Q psy13784 276 VNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFF 354 (388)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~ 354 (388)
.++.|.... .....+.......|...++..+. .++|+.+.+.......+|..++|.+.+.+.++.| ...++
T Consensus 91 -----~~~~~~l~i-~~~l~g~~~~~~~~~~~a~~~~~--~~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~ 162 (382)
T PRK11128 91 -----AHSFWLLFV-AIGLFNLFFSPLVPLTDALANTW--QKQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILW 162 (382)
T ss_pred -----cccHHHHHH-HHHHHHHHHcccccHHHHHHHHH--HhhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHH
Confidence 112233332 23323333334456555555554 3457888888999999999999999999999999 65666
Q ss_pred HHHHHHHHHHHHhheeccCC
Q psy13784 355 FYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~ 374 (388)
..+...++..+ .....||.
T Consensus 163 ~~~~~~~~~~~-~~~~~~~~ 181 (382)
T PRK11128 163 ILTAGVASMLL-GQLLRPTI 181 (382)
T ss_pred HHHHHHHHHHH-HHHccCCC
Confidence 55544443333 33334443
|
|
| >TIGR00902 2A0127 phenyl proprionate permease family protein | Back alignment and domain information |
|---|
Probab=99.03 E-value=8.3e-09 Score=92.86 Aligned_cols=150 Identities=9% Similarity=0.012 Sum_probs=100.8
Q ss_pred HhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHH-HHHHHHHHHhhccc
Q psy13784 194 QFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIA-LSMLVIGTYLLFEK 272 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 272 (388)
.+........+.|.++++.|+|..+.+.......+...++.++.+.++||++|+........... +..+.+.. .
T Consensus 16 ~~~~~~~~~p~l~~~l~~~g~s~~~ig~~~s~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~l~~~~~~~---~-- 90 (382)
T TIGR00902 16 YFCAYGIFLPFFPAWLKGIGLGEEMIGLLIGAALIARFAGGLFFAPLIKDANHIIIALRLLALASAIFAAAFSA---G-- 90 (382)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH---h--
Confidence 33445667788889999999999999999999999999999999999999998543322221111 11111111 0
Q ss_pred CccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cc
Q psy13784 273 APIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NG 351 (388)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~ 351 (388)
.++.+..+....+...+. ....|...++..+. +++|+..+|.......+|..++|.+.+.+.+..| ..
T Consensus 91 --------~~~~~~l~~~~~l~~~~~-~~~~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~ 159 (382)
T TIGR00902 91 --------AHNAWLLFIAIGLFALFF-SAGMPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQN 159 (382)
T ss_pred --------hhhHHHHHHHHHHHHHHH-ccchhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhH
Confidence 112233333322333333 33446666666542 5678999999999999999999999999999999 55
Q ss_pred hhhHHHHH
Q psy13784 352 IFFFYGLV 359 (388)
Q Consensus 352 ~~~~~~~~ 359 (388)
.+...+..
T Consensus 160 ~f~~~~~~ 167 (382)
T TIGR00902 160 ILAILTAG 167 (382)
T ss_pred HHHHHHHH
Confidence 55555443
|
This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules. |
| >PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins | Back alignment and domain information |
|---|
Probab=99.00 E-value=9.3e-09 Score=94.97 Aligned_cols=149 Identities=15% Similarity=0.099 Sum_probs=101.1
Q ss_pred HHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccccccc
Q psy13784 202 LAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWG 281 (388)
Q Consensus 202 ~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (388)
..-.+.+.++.|-+ .+..++.....+...++.++.|+++|.+|||+.++.+.++..++.++.+. .
T Consensus 64 a~~l~~I~~diG~~-~~~~w~~~~~~l~~av~~~~~G~LSDlfGRr~~~i~g~~l~vvG~Iv~at--------------A 128 (599)
T PF06609_consen 64 ASILPYINADIGGS-DNWSWFSTAWTLASAVSFPFVGRLSDLFGRRYFFIIGSLLGVVGSIVCAT--------------A 128 (599)
T ss_pred HHHHHHHHHhcCCC-ccchHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHhHHHHhhc--------------C
Confidence 34456666777774 55567777788999999999999999999999999999999999998865 1
Q ss_pred ccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHH
Q psy13784 282 FFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVA 360 (388)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~ 360 (388)
.+....+....+.+.+. +........++|..|.+.|..+.++.....-.....+|.+...+..+.+ .+.+++..++.
T Consensus 129 ~~~~~~iag~~l~Gvga--G~~~~~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~ 206 (599)
T PF06609_consen 129 QNMNTFIAGMVLYGVGA--GVQELAALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWS 206 (599)
T ss_pred CcHHHHHHHHHHHHHhh--HHHHHHHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHH
Confidence 12222333333333332 3333445668999999999888877665554555566776666554445 55666666665
Q ss_pred HHHHHHh
Q psy13784 361 AIGTAHV 367 (388)
Q Consensus 361 ~~~~~~~ 367 (388)
.++.+..
T Consensus 207 ~i~~vl~ 213 (599)
T PF06609_consen 207 GIALVLI 213 (599)
T ss_pred HHHHHHH
Confidence 5554433
|
Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes []. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=98.99 E-value=7.7e-08 Score=84.44 Aligned_cols=109 Identities=16% Similarity=0.118 Sum_probs=78.7
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHHHH
Q psy13784 3 KLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAFGL 82 (388)
Q Consensus 3 r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G~ 82 (388)
|...+.=+..+.+++.++.++.++++|.+.-+++-.+.+++.|.....-..+... +++ ...+-+..+.+.+.
T Consensus 85 ~v~y~~Ri~~~~~l~~~g~l~va~~~~v~~~l~Gv~las~ssg~GE~tfL~lt~~----y~~----~~l~~wssGTG~aG 156 (402)
T PF02487_consen 85 RVPYWIRILICVALSAAGMLLVAFSPSVWVRLLGVVLASLSSGLGEVTFLSLTHF----YGK----SSLSAWSSGTGGAG 156 (402)
T ss_pred hccchHHHHHHHHHHHHHHhheeeccchhHHHHHHHHHhhhhhhhHHHHHHHHHh----cCc----cccccccCCcChhh
Confidence 3443334556667888899999999999999999999999999988877776554 554 34677777777777
Q ss_pred HHHHHHHhHH-----hHHHHHHHhHHHHHHHHHHHHhccCCC
Q psy13784 83 LQVYFMGSLL-----RYRKVAAMAAIFSALGTILITFIIPES 119 (388)
Q Consensus 83 ~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~pes 119 (388)
++|+..-..+ +-|..++....+.++..+..++.+|++
T Consensus 157 l~Ga~~y~~lT~~g~s~~~tll~~~~lp~~~~~~~f~~L~~~ 198 (402)
T PF02487_consen 157 LVGALYYLGLTTLGLSPRTTLLIMLVLPAIFLLSYFFLLPSP 198 (402)
T ss_pred HHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 7777655444 557788888777766666656645544
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=2.2e-07 Score=83.00 Aligned_cols=301 Identities=13% Similarity=0.061 Sum_probs=164.3
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHHH
Q psy13784 2 DKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAFG 81 (388)
Q Consensus 2 Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G 81 (388)
|+.|.|+.+.++...+..-.+..-+ +|-+.+++.-.+.|+|.+..+..--.|++| ..+++++.+..++.......+
T Consensus 75 ~~i~~K~~lv~ga~~y~~f~~gfl~-~N~y~~yfssallG~Gaallw~GqG~ylt~---~st~~tie~Nisi~Wai~~~~ 150 (461)
T KOG3098|consen 75 NFLGPKWALVIGATCYAAFPLGFLF-PNSYYLYFSSALLGFGAALLWTGQGGYLTS---NSTRETIERNISIFWAIGQSS 150 (461)
T ss_pred HHhhHHHHHHHHhHHHHHHHHHHHh-cchHHHHHHHHHhhhhHHheecccceehhh---cCChhhHHHHHHHHHHHHHHH
Confidence 6789999999999998887776655 456677889999999999999999999999 899999999999999999999
Q ss_pred HHHHHHHHhHH------------hHH-H----------HHHHhHHHHHHHHHHHHh--ccCCCchHHhhcCChhhHHHHH
Q psy13784 82 LLQVYFMGSLL------------RYR-K----------VAAMAAIFSALGTILITF--IIPESPAWLNSKGRRGDAEWAA 136 (388)
Q Consensus 82 ~~~~~~~~~~~------------~w~-~----------~f~~~~~~~~~~~~~~~~--~~pesp~~~~~~~~~~~~~~~~ 136 (388)
.++|+.+-..+ +-+ . ...+.+++..+..+.... +.|.. .....+
T Consensus 151 li~Ggi~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~v~~~~~~l~~i~~~~~p~~-~~~~~~---------- 219 (461)
T KOG3098|consen 151 LIIGGIILFIYFQFSSSSAIITDGTRRLVFEVLFIDFEIKVLFGVLLAISVLSIINFDFLPSK-DVVNCK---------- 219 (461)
T ss_pred HHhhhHhheeeeEecccccccccchhhhhcchhhhhHHHHHHHHHHHHHHHHHhhheeecCcc-chhhhh----------
Confidence 99887765554 121 1 111111111111111111 12211 000000
Q ss_pred HHhcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH---HcC
Q psy13784 137 KRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR---SSG 213 (388)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~g 213 (388)
+..+....+..+...+.+++++..... . .++..... ...+....|.-+. ..+
T Consensus 220 --------------------~~~~~~~~~~l~~~~~l~~~~~ml~L~---~-~f~~tG~~-~Sf~~~iypt~i~ft~~~~ 274 (461)
T KOG3098|consen 220 --------------------SSSETSFSELLKLTFKLLKTPKMLLLF---P-FFFYTGLE-TSFWISIYPTCISFTRKLG 274 (461)
T ss_pred --------------------hhccccHHHHHHHHHHHhcCHhHHHHH---H-HHHHHHHH-HHHHHhccchhhhhhhhcc
Confidence 000000011112334445554432211 1 11111111 1111111222211 222
Q ss_pred CCC-CcHHHHHHHHHHHHHHHHHhhheeecc---cCCchHHHHhhHHHHHHHHHHHHHhhcccCc--cccccc-cccchH
Q psy13784 214 FHL-LNPYFITVIGGLIIFASVISISFILPH---TGVKPLSAASGMGIALSMLVIGTYLLFEKAP--IVNFEW-GFFNLI 286 (388)
Q Consensus 214 ~s~-~~~~~~~~~~~~~~~~~~~~~g~l~d~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~ 286 (388)
.+. .-.+......+++..++....+.+.+| +|+++++..+..+..+..++.-+....+.+. ..+... ......
T Consensus 275 ~n~~~~~ai~~~~~g~g~v~~g~~~~~l~~rir~fg~~~~~~~~~~~~~~~~~li~l~~p~dap~~~t~~~~~~~~~~~~ 354 (461)
T KOG3098|consen 275 SNTTYLIAIYSIGIGLGEVIGGLDFSILSKRIRGFGRKPTVLIGIIIHLIGFLLIHLSFPNDAPLRPTDSPPLLFTPSYY 354 (461)
T ss_pred CcchhHHHHHHHHHhHHHHHHHHHHHHHhhhhhhcccCcchhHHHHHHHHHHHHHhccccccCCCCCCcccccccccchh
Confidence 222 223444555567777777777777765 6788888877777777666664432221110 011111 111222
Q ss_pred HHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy13784 287 PLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPT 343 (388)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~ 343 (388)
.........+..-..+....+..+.+.+ ++.|..+.++...-..+++.++-...+.
T Consensus 355 ~~~ii~~l~G~~D~~~~t~~~~ii~~~~-~~~~~~~fsi~kfyq~~~s~v~~f~~~~ 410 (461)
T KOG3098|consen 355 LALIIGFLLGFGDACFNTQRYVIIALLY-PDDRAQAFSLFKFYQSVASCVAFFFSPY 410 (461)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHh-cCchHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 3333334444444455666778888888 4558888888888777777666554443
|
|
| >TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family | Back alignment and domain information |
|---|
Probab=98.96 E-value=7.3e-08 Score=87.06 Aligned_cols=173 Identities=11% Similarity=-0.031 Sum_probs=112.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHH--HHHHHHHHHHHHhh-heeecccCCchHHHHhhHHH-HHHHHHHH
Q psy13784 190 FLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFIT--VIGGLIIFASVISI-SFILPHTGVKPLSAASGMGI-ALSMLVIG 265 (388)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~--~~~~~~~~~~~~~~-g~l~d~~g~~~~~~~~~~~~-~~~~~~~~ 265 (388)
.++.+...+.....+.|.++++.|.|..+.+... ....+...+.+++. ++..||.|||+..+....+. ......+.
T Consensus 9 ly~~~g~~~~~~~p~lp~~l~~~g~~~~~iGl~~~~~l~~~~~~l~~p~~~~~~~~~~g~r~~~i~~~~~~~~~~~~~~~ 88 (390)
T TIGR02718 9 LYLSQGIPIGLAMDALPTLLREDGAPLTALAFLPLVGLPWVVKFLWAPLVDNWWSWRLGRRRSWVLPMQCLVSACLASLA 88 (390)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCcchhHHHHHHHHHHHHHHHHH
Confidence 3344555567788899999999999999999873 55577777777777 45799999988865554332 22222222
Q ss_pred HHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy13784 266 TYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLH 345 (388)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~ 345 (388)
... ... ......... ......+.....+....+..|..+++.++...+.......+|..+++...+++.
T Consensus 89 ~~~-~~~---------~~~~~~~~~-~~~~~~~~a~~d~~~d~~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~ 157 (390)
T TIGR02718 89 LVG-PDV---------AGAGWAVGL-LACASLASATQDIATDGMAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLF 157 (390)
T ss_pred cCC-cch---------hhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 110 000 111122222 222223333334555567788888888888888888877899999999888999
Q ss_pred hhcc-cchhhHHHHHHHHHHHHhheeccC
Q psy13784 346 LALG-NGIFFFYGLVAAIGTAHVLAYLPE 373 (388)
Q Consensus 346 ~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 373 (388)
+..| ...+++.+++.++..+..+...++
T Consensus 158 ~~~gw~~~f~~~a~l~~~~~~~~~~~~~~ 186 (390)
T TIGR02718 158 GKFGQRPAFLLVACVPLASLVCVLWLKDR 186 (390)
T ss_pred HHhCHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9999 778888887776666554444443
|
RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes. |
| >KOG2532|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-08 Score=92.66 Aligned_cols=148 Identities=15% Similarity=0.053 Sum_probs=122.8
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHH
Q psy13784 212 SGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAAL 291 (388)
Q Consensus 212 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (388)
..+++.+.+.+......+.+++.+.++++.||+|-|+++..+.++..++.++..+.... ..+ .++..
T Consensus 68 ~~ws~~~k~~i~ss~~~G~i~~~iP~g~l~~k~G~r~v~~~~~~~sa~~t~l~P~aa~~------------~~~-~~~~~ 134 (466)
T KOG2532|consen 68 YDWSSTEKGLIFSSFFWGYILGQIPGGYLADKFGARRVFFISGLISALLTLLTPLAASI------------GFY-LLLVL 134 (466)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHcCcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHh------------cch-hhHHH
Confidence 45667788999999999999999999999999999999999999999888888764321 223 44555
Q ss_pred HHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-cc-cchhhHHHHHHHHHHHHhhe
Q psy13784 292 VLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA-LG-NGIFFFYGLVAAIGTAHVLA 369 (388)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~-~g-~~~~~~~~~~~~~~~~~~~~ 369 (388)
-+..+.......|....+..+-.|+++|++..++..+...+|.+++-++.|.+.+. .| ...|++.+++.++..++.+.
T Consensus 135 R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~ 214 (466)
T KOG2532|consen 135 RFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFL 214 (466)
T ss_pred HHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 56666555556688889999999999999999999999999999999999999998 88 88899999988887775554
Q ss_pred ecc
Q psy13784 370 YLP 372 (388)
Q Consensus 370 ~~~ 372 (388)
+..
T Consensus 215 ~~~ 217 (466)
T KOG2532|consen 215 FYS 217 (466)
T ss_pred Hhc
Confidence 443
|
|
| >TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.5e-08 Score=88.06 Aligned_cols=168 Identities=9% Similarity=-0.024 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecc----cCCch-HHHHhhHHHHHHHHHHHHHhhccc
Q psy13784 199 NVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVISISFILPH----TGVKP-LSAASGMGIALSMLVIGTYLLFEK 272 (388)
Q Consensus 199 ~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 272 (388)
.....|.+.++. +.|.++.+.+...+...+...+..++.|.++|| +|||| .+..+....+++.+++.. .++
T Consensus 16 ~~~~~~l~~~~~~~~g~s~~~~g~i~~~~~i~~~i~~p~~G~lsDr~~~r~Grrr~~i~~~~~~~~i~~~~~~~---~~~ 92 (437)
T TIGR00792 16 AIVSTYLLFFYTDVLGLSAAFVGTLFLVARILDAITDPIMGNIVDRTRTRWGKFRPWLLIGAIPFSIVLVLLFT---TPD 92 (437)
T ss_pred HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhccchheEeeecCCCCCCCcchhHHHhHHHHHHHHHHHHh---CCC
Confidence 444555666665 579999999999999999999999999999998 56645 455666666666555533 111
Q ss_pred CccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCC-chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh----
Q psy13784 273 APIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIF-PMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA---- 347 (388)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~---- 347 (388)
. ......+.......+...+... ......++..|.. ++++|++..++.+....+|+.+++.+.+.+...
T Consensus 93 ~-----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~ 166 (437)
T TIGR00792 93 F-----SATGKLVYAYITYILLGLFYSF-VNIPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGG 166 (437)
T ss_pred C-----CcchHHHHHHHHHHHHHHHHHh-hcccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0 0000111222222223333332 2233346777876 568899999999988889888887776666543
Q ss_pred ---cc-cchhhHHHHHHHHHHHHhheeccCCC
Q psy13784 348 ---LG-NGIFFFYGLVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 348 ---~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (388)
.+ ...+.+.+++.++..++.+...+|++
T Consensus 167 ~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~ 198 (437)
T TIGR00792 167 DDKFGWFMFALVLALIGVVSLIICFFGTKERY 198 (437)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence 23 33455666666666555555666653
|
GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners. |
| >KOG0255|consensus | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.8e-08 Score=93.29 Aligned_cols=144 Identities=12% Similarity=0.028 Sum_probs=111.5
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHH
Q psy13784 213 GFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALV 292 (388)
Q Consensus 213 g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (388)
..+........++..++..+|+++.|.++||+|||+++..+.++..++.+..++ ..++..+...-
T Consensus 114 c~~~~~~~~~~s~~~~G~~vG~~i~g~lsD~~GRk~~~~~~~~~~~i~~~~~a~---------------a~~~~~~~~~R 178 (521)
T KOG0255|consen 114 CDSSTLVALGQSLFFLGVLVGSLIFGPLSDRFGRKPVLLVSLLLFIIFGILTAF---------------APNYWMFLIFR 178 (521)
T ss_pred eCcHhHHHHHHHHHHHHHHHHHhhheehHhhcccHHHHHHHHHHHHHHHHHHHH---------------hCcHHHHHHHH
Confidence 444566777888889999999999999999999999999999999888877766 34566667777
Q ss_pred HHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhHHHHHHHHHHHHhheecc
Q psy13784 293 LNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGIFFFYGLVAAIGTAHVLAYLP 372 (388)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 372 (388)
++.+.+..+.....+.+..|.++++.|+.+..+ ......++.+++...+++...+ ...+++......+..++ +++.+
T Consensus 179 fl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~~~~~~~~~a~~~~~W-r~~~~~~~~~~~~~~~~-~~l~~ 255 (521)
T KOG0255|consen 179 FLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVGGLMLPAGAAYITRDW-RWLFWIISIPSGLFLLL-WFLPP 255 (521)
T ss_pred HHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHH-HHccC
Confidence 777777777778888999999999999999999 8888899999999888887732 33344444444433333 44454
Q ss_pred CC
Q psy13784 373 ET 374 (388)
Q Consensus 373 ~~ 374 (388)
|.
T Consensus 256 Es 257 (521)
T KOG0255|consen 256 ES 257 (521)
T ss_pred cC
Confidence 54
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.2e-08 Score=82.53 Aligned_cols=157 Identities=10% Similarity=0.065 Sum_probs=107.3
Q ss_pred HhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccC
Q psy13784 194 QFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKA 273 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (388)
.....+.+..|.|.+-+++|+|.++...+.....++..+| ++.|.+.|+.|++.++.++.....++...+........
T Consensus 14 ~~Gt~Y~Fs~yS~~Lk~~l~~sq~~l~~l~~~~~~G~~~G-~~~G~l~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i- 91 (250)
T PF06813_consen 14 CSGTTYTFSAYSPQLKSRLGYSQSQLNTLSTAGDIGSYFG-ILAGLLYDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRI- 91 (250)
T ss_pred hcCcccchhhhhHHHHHHhCCCHHHHHHHHHHHHHHhhcc-HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhCcc-
Confidence 3334677889999999999999999988888888888764 88899999999999999999999999988865332211
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhcc-ccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccch
Q psy13784 274 PIVNFEWGFFNLIPLAALVLNLVASSVGF-LPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGI 352 (388)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~ 352 (388)
...+.+.. +.....++.+.++ .........+.+|+ +||++.|+.-....+++.+-..+...+.+......
T Consensus 92 -------~~~~~~~~-~~~~~l~~~s~~~~~ta~lvt~~~NFP~-~RG~vvgilk~~~GLSaai~t~i~~~~f~~~~~~f 162 (250)
T PF06813_consen 92 -------PSLPVWLM-CLFLFLGGNSSCWFNTASLVTCVRNFPR-SRGTVVGILKGFFGLSAAIFTQIYSAFFGDDPSSF 162 (250)
T ss_pred -------CccchHHH-HHHHHHHcccHHHhhhHHHHHHHHhCcc-ccCceehhhhHHHHhHHHHHHHHHHHHcCCChHHH
Confidence 11122222 2222222222222 23333445578885 69999999999999999988887777665533333
Q ss_pred hhHHHHHHH
Q psy13784 353 FFFYGLVAA 361 (388)
Q Consensus 353 ~~~~~~~~~ 361 (388)
+...+....
T Consensus 163 ll~la~~~~ 171 (250)
T PF06813_consen 163 LLFLAVLPA 171 (250)
T ss_pred HHHHHHHHH
Confidence 344444333
|
|
| >TIGR00883 2A0106 metabolite-proton symporter | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.2e-07 Score=85.70 Aligned_cols=108 Identities=19% Similarity=0.018 Sum_probs=75.2
Q ss_pred HHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccch--HHHHHHHHHHHHHHhccccch
Q psy13784 229 IIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNL--IPLAALVLNLVASSVGFLPIP 306 (388)
Q Consensus 229 ~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 306 (388)
...+++++.|+++||+|||+.+..+..+..++.++......... ...+ .......+..+.......+..
T Consensus 47 ~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~r~l~G~~~~~~~~~~ 117 (394)
T TIGR00883 47 ARPLGAIVFGHFGDRIGRKKTLVITLLMMGIGTLLIGLLPSYAT---------IGIWAPILLLLARLIQGFSLGGEWGGA 117 (394)
T ss_pred HhhhHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHhhCCChhh---------hHHHHHHHHHHHHHHHHhhcccccccc
Confidence 33568899999999999999999998888888777755110000 0001 112222233333333344566
Q ss_pred hhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy13784 307 YLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLH 345 (388)
Q Consensus 307 ~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~ 345 (388)
..++.|.+|+++|+...++.+....+|..+++.+.+.+.
T Consensus 118 ~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~ 156 (394)
T TIGR00883 118 ALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLS 156 (394)
T ss_pred HHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999999999999999999999988876654
|
This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc. |
| >KOG0569|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=6e-08 Score=87.40 Aligned_cols=143 Identities=17% Similarity=0.110 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHH
Q psy13784 220 YFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASS 299 (388)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
+...+...+++++|++..++++||+|||..+....+...++.+.+.+..... .....+..=++.+...+
T Consensus 63 S~~vs~f~iG~~~Gs~~~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~-----------~~e~li~GR~i~Gl~~g 131 (485)
T KOG0569|consen 63 SLIVSIFFIGGMIGSFSSGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAP-----------SFEMLILGRLIVGLACG 131 (485)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhh-----------hHHHHHHHHHHHHHHhH
Confidence 4556667899999999999999999999998888887777777776533221 12233333233333333
Q ss_pred hccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHh-HHHHhhcc-cchhhHHHHHHHHHHHHhheeccCC
Q psy13784 300 VGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTW-PTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 300 ~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~-g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
... .....+..|..|++.||....+......+|..++..+. +.+..... |........+..+..++...+.||+
T Consensus 132 l~~-~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PES 207 (485)
T KOG0569|consen 132 LST-GLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPES 207 (485)
T ss_pred HHH-HHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 333 44447899999999999999999999999988885543 33333333 4444444445445555566778886
|
|
| >KOG2504|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=6e-08 Score=89.27 Aligned_cols=159 Identities=14% Similarity=0.103 Sum_probs=120.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccc
Q psy13784 198 VNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVN 277 (388)
Q Consensus 198 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (388)
.+.+..+.+.+.++.+.+..+.++..++...+.....++.+.+.||+|.|.+.+.+.++..+++++..+.
T Consensus 62 ~~~~Gv~~~~~~~~f~~s~~~~~~i~sl~~~~~~~~gpl~s~l~~rfg~R~v~i~G~~v~~~g~~lssF~---------- 131 (509)
T KOG2504|consen 62 INSFGLLFEELMDYFGSSSSQIAWIGSLLLGVYLLAGPLVSALCNRFGCRTVMIAGGLVAALGLLLSSFA---------- 131 (509)
T ss_pred hheehhhHHHHHHHhCCCccHHHHHHHHHHHHHHHhccHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHH----------
Confidence 3444455666667778878888999999999999999999999999999999999999999999988772
Q ss_pred ccccccchHHHHH-HHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhH
Q psy13784 278 FEWGFFNLIPLAA-LVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFF 355 (388)
Q Consensus 278 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~ 355 (388)
.+.|..++. -.+.+.++++.+.|.. ..+.. +-+++|+.+.|+......+|.++-|.+...+.+..| ....++
T Consensus 132 ----~~i~~l~lt~gvi~G~G~~~~~~pai-viv~~-YF~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~~G~r~~~l~ 205 (509)
T KOG2504|consen 132 ----TSLWQLYLTFGVIGGLGLGLIYLPAV-VILGT-YFEKKRALATGIAVSGTGVGTVVFPPLLKYLLSKYGWRGALLI 205 (509)
T ss_pred ----hhHHHHHHHHHHHhhccchhhhcchh-hhhhh-HhHHHHHHHHhhhhccCCcceeeHHHHHHHHHHHhCcHHHHHH
Confidence 122333332 2333334444444443 45554 445669999999999999999999999999999999 888888
Q ss_pred HHHHHHHHHHHhheecc
Q psy13784 356 YGLVAAIGTAHVLAYLP 372 (388)
Q Consensus 356 ~~~~~~~~~~~~~~~~~ 372 (388)
.+.+.+-..+......|
T Consensus 206 ~~~~~l~~~~~~~~~rp 222 (509)
T KOG2504|consen 206 FGGISLNVLVAGALLRP 222 (509)
T ss_pred HHHHHHHHHHHHHHcCC
Confidence 88888766666555555
|
|
| >KOG0254|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.5e-07 Score=88.13 Aligned_cols=138 Identities=14% Similarity=0.043 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHH
Q psy13784 220 YFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASS 299 (388)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
+++.+...++..+++++.|+++|++|||+.+..+.+...++.++.... .+...+...-++.+...
T Consensus 92 s~~~s~~~lga~~g~l~~g~l~d~~GRk~~l~~~~~~~~iG~ii~~~a---------------~~~~~l~~GR~l~G~g~ 156 (513)
T KOG0254|consen 92 GLLTSILNLGALVGSLLAGRLGDRIGRKKTLLLAVVLFLIGAIIIALA---------------PSWYQLIVGRILTGLGV 156 (513)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHhccch
Confidence 789999999999999999999999999999999999999999998772 22333333333333333
Q ss_pred hccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc--ccc-hhhHHHHHHHHHHHHhheeccCC
Q psy13784 300 VGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL--GNG-IFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 300 ~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~--g~~-~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
.+.......+.+|..|++.||...+..+....+|..++ .+.+...++. +|. .+.+..+.+++..+. .++.||+
T Consensus 157 G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~-~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~-~~~~pes 232 (513)
T KOG0254|consen 157 GGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLG-YCINYGTSKVYAGWRIPLGLALIPAVILALG-MLFLPES 232 (513)
T ss_pred hhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHH-HHHhhhhccCCccHHHHHHHHHHHHHHHHHH-HHhCCCC
Confidence 33334555899999999999999999999998887777 5555555543 433 333444444444444 6677765
|
|
| >COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.2e-08 Score=88.66 Aligned_cols=158 Identities=16% Similarity=0.087 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHH-HcC----CCCCcHHHHHHHHHHHHHHHHHhhheeecc-cCCchHHHHhhHHHHHHHHHHHHHhhcc
Q psy13784 198 VNVILAYMTDFVR-SSG----FHLLNPYFITVIGGLIIFASVISISFILPH-TGVKPLSAASGMGIALSMLVIGTYLLFE 271 (388)
Q Consensus 198 ~~~~~~~~~~~~~-~~g----~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (388)
++.+..-+..|+. +.+ +|.+++......++...-+..+++|+++|| +|+|+.+..+.+++.++.+.++...
T Consensus 37 yYGmraiL~~Yl~~~~~~gLg~~~~~A~~l~~~y~slVY~t~i~GG~laDr~LG~~~tI~lGail~~iGh~~L~~~~--- 113 (498)
T COG3104 37 YYGMRAILILYLYYQLGDGLGFDETHATGLFSAYGSLVYLTPIIGGWLADRVLGTRRTIVLGAILMAIGHLVLAISS--- 113 (498)
T ss_pred hhhhHHHHHHHHHHhccccCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhccc---
Confidence 4444444444443 444 888888888888888888899999999999 5999999999999999999997711
Q ss_pred cCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhh--HHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 272 KAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEV--KGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
........+.+.++. .....+=|....++.|.+|+++ |..++++..+..++|+.++|.+.+++.++.|
T Consensus 114 ---------~~~~~gl~i~L~~I~-iG~Gl~K~NiS~llg~ly~~~DprrD~gFt~fY~~iNiGsl~~p~i~~~~~~~~g 183 (498)
T COG3104 114 ---------VSGPGGLYIGLALII-VGTGLFKPNISSLLGELYPKDDPRRDGGFTLFYMGINIGSLIAPIITGLLAINYG 183 (498)
T ss_pred ---------cccccHHHHHHHHHH-hccccccccHHHHHHHhcCCCCcccCCCccEEEEEeehHHHHHHHHHHHHHHhhC
Confidence 011222333333333 3334445677789999998643 6778888999999999999999999999999
Q ss_pred -cchhhHHHHHHHHHHHHhh
Q psy13784 350 -NGIFFFYGLVAAIGTAHVL 368 (388)
Q Consensus 350 -~~~~~~~~~~~~~~~~~~~ 368 (388)
+..|...++-+.++.+..+
T Consensus 184 ~~~gF~~aavGm~~gl~~f~ 203 (498)
T COG3104 184 WHVGFGLAAVGMIIGLVIFL 203 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666555443
|
|
| >COG0738 FucP Fucose permease [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.2e-07 Score=79.21 Aligned_cols=155 Identities=7% Similarity=-0.083 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccc
Q psy13784 201 ILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEW 280 (388)
Q Consensus 201 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (388)
.-...|.+.+..+++..+++........+..+.++..+++.+|+|+|+-+..++.++++++.++.-...
T Consensus 32 ~diLip~l~~~f~ls~~~a~liqfaff~gYf~~~lpa~~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~----------- 100 (422)
T COG0738 32 NDILIPHLKEVFDLTYFEASLIQFAFFGGYFIMSLPAGLLIKKLGYKAGIVLGLLLYAVGAALFWPAAS----------- 100 (422)
T ss_pred chhhHHHHHHHhCccHHHHHHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhhhh-----------
Confidence 344567766777999999999999999999999999999999999999999999999999988842111
Q ss_pred cccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh-------------
Q psy13784 281 GFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA------------- 347 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~------------- 347 (388)
...+..+....+..+......-...+.++..+.|++..+.-+.+.+.++.+|.+++|.+.+.+..+
T Consensus 101 -~~~y~~FL~~lFila~Gi~~LetaaNp~v~~lg~~~~a~~rlnl~q~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~ 179 (422)
T COG0738 101 -SKSYGFFLVALFILASGIGLLETAANPYVTLLGKPESAAFRLNLAQAFNGLGAILGPLLGSSLILSGVALTMSAAQILA 179 (422)
T ss_pred -hhhHHHHHHHHHHHHhhhHHHHhccchHHHHhCCchhHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHH
Confidence 122333332222222222223345567888888988888899999999999999999999998872
Q ss_pred -----cc--cchhhHHHHHHHHHHHHh
Q psy13784 348 -----LG--NGIFFFYGLVAAIGTAHV 367 (388)
Q Consensus 348 -----~g--~~~~~~~~~~~~~~~~~~ 367 (388)
.. +.++...+...++..+..
T Consensus 180 ~~~~~~~~v~~pYl~~~~~lvll~v~~ 206 (422)
T COG0738 180 IKGADASSVQFPYLILAGLLVLLAVLI 206 (422)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 11 456666666666555543
|
|
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.5e-05 Score=71.43 Aligned_cols=258 Identities=13% Similarity=0.107 Sum_probs=136.9
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccC----CCchHHhhcCChhhHHH
Q psy13784 63 NTKLRGSLATWATTARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIP----ESPAWLNSKGRRGDAEW 134 (388)
Q Consensus 63 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~p----esp~~~~~~~~~~~~~~ 134 (388)
+++.+.+..+...-.=-+..+++|++.+.+ +.+....+.+...++...+=++++. ..|. +..+++.++.+.
T Consensus 143 ~~~~La~~NA~mRRIDL~ckllaPl~vG~l~t~~s~~~~~~~i~~~N~~S~~vEy~~l~~VY~~~P~-L~~~~~~~~~~~ 221 (432)
T PF06963_consen 143 DPGALARMNATMRRIDLFCKLLAPLFVGLLMTFASPVIAAIFIAGWNLASVFVEYFLLARVYNSVPA-LAVKKRSSESES 221 (432)
T ss_pred ChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-hcCCCCCccccc
Confidence 455666777777666677888888888877 6777777667766666555444221 2221 111111110000
Q ss_pred HHHHhcCCCCCCCCCCCcccc-ccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcC
Q psy13784 135 AAKRLRLGPPSNQTEPTSRGD-AESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSG 213 (388)
Q Consensus 135 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 213 (388)
..+. ++..++..... .+...+.-+.....++..++.+.+...+-+ .++++. ...+......|+...|
T Consensus 222 ~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~w~~Y~~q~vflas~al-alLY~T-----VLsf~~lmt~yl~~~G 289 (432)
T PF06963_consen 222 SSDE------ESSSESSSDPSILKRLWNPLRTIIRGWRTYFRQPVFLASFAL-ALLYFT-----VLSFGGLMTAYLKSQG 289 (432)
T ss_pred cccc------cccccccchhhHHHHHHHHHHHHhccHHHHHhCHHHHHHHHH-HHHHHH-----HhcCcHHHHHHHHHCC
Confidence 0000 00000000000 000000011112333444444432222211 212221 1223344556666669
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccc-cccchHHHHHHH
Q psy13784 214 FHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEW-GFFNLIPLAALV 292 (388)
Q Consensus 214 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 292 (388)
+++...+..-....+.++.+++...++.+|+|..+.-.++......++.+.....+.... + .......++...
T Consensus 290 ~s~~~igi~R~~gav~Gl~gT~~~p~l~~riGlvr~G~~~l~~q~~~L~~~v~~~~~~~~------~~~~~s~~~l~~gi 363 (432)
T PF06963_consen 290 YSPSVIGIFRGLGAVFGLLGTWVYPWLMKRIGLVRAGLWSLWWQWVCLALCVVSFWAPGS------PFSSISAYLLLGGI 363 (432)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcCCC------CchhhHHHHHHHHH
Confidence 999999999999999999999999999999999888877777666555555443333322 0 001111111111
Q ss_pred HHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHH
Q psy13784 293 LNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVK 339 (388)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~ 339 (388)
...=..--++--....+..|..|+++||+..|+-+..+++...+.-.
T Consensus 364 ~~SR~GLW~fDL~~~qi~Qe~V~~~~Rg~v~gvq~sl~~lf~ll~~~ 410 (432)
T PF06963_consen 364 ALSRIGLWSFDLAVTQIMQENVPESERGAVSGVQNSLQSLFELLSFV 410 (432)
T ss_pred HHHHHHHHhhhHHHHHhhcccCCHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 11111112222334467889999999999999999999887766544
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >PRK09669 putative symporter YagG; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.7e-07 Score=83.26 Aligned_cols=166 Identities=11% Similarity=0.004 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecc----cCCc-hHHHHhhHHHHHHHHHHHHHhhccc
Q psy13784 199 NVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVISISFILPH----TGVK-PLSAASGMGIALSMLVIGTYLLFEK 272 (388)
Q Consensus 199 ~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (388)
..+..|.+.++. ..|+++...+....+.-+...+..++.|+++|| +||| +.+..+....+++..++.. .++
T Consensus 26 ~~~~~~l~~~~t~~~gls~~~~g~i~~i~~i~dai~dp~~G~lsD~~~~r~Grrrp~il~~~~~~~i~~~l~f~---~p~ 102 (444)
T PRK09669 26 QTVMLFLAYFYTDVFGLSAAIMGTMFLVVRVLDAVTDPLMGALVDRTRTRHGQFRPYLLWFAIPFGVVCLLTFY---TPD 102 (444)
T ss_pred HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcccceeeEeeecCCCCCCCcchhHHHHHHHHHHHHHHHHh---CCC
Confidence 445566666665 569999999999999999999999999999998 5664 4455565555555544322 111
Q ss_pred CccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCC-chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc--
Q psy13784 273 APIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIF-PMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-- 349 (388)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-- 349 (388)
. ......+...+...+....+.. ......++.+|.. ++++|.+..+.-.....+|+.+++.+...+....+
T Consensus 103 ~-----~~~~~~~~~~~~~~l~~~~~t~-~~ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~ 176 (444)
T PRK09669 103 F-----GATGKIIYACVTYILLSLVYTA-INVPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKG 176 (444)
T ss_pred C-----CcchHHHHHHHHHHHHHHHHHh-hcchHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 0 0001112222222333333333 2233347888877 55779998898888888988888876665555442
Q ss_pred ------cchhhHHHHHHHHHHHHhheeccC
Q psy13784 350 ------NGIFFFYGLVAAIGTAHVLAYLPE 373 (388)
Q Consensus 350 ------~~~~~~~~~~~~~~~~~~~~~~~~ 373 (388)
...+.+.+++..+..+..++..+|
T Consensus 177 ~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e 206 (444)
T PRK09669 177 DEQKGYFYAMMVMGLLGVVLFFCCFFMTKE 206 (444)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHhCCeEE
Confidence 113344444444444444444444
|
|
| >KOG3810|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=8.1e-07 Score=74.82 Aligned_cols=328 Identities=13% Similarity=0.144 Sum_probs=191.9
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHHH
Q psy13784 2 DKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAFG 81 (388)
Q Consensus 2 Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G 81 (388)
|..=.|+++++-.+.......+..+.++.+.+=+.-+..|...+.. .+-++|+.+ ..+|+++.++.+...+..-.|
T Consensus 67 D~lrYKPvivlq~ls~v~~w~~lv~g~sV~~mQvlE~FyG~~tAaE-IAYysYIYs---~Vd~~~Yqrvt~y~RaA~L~g 142 (433)
T KOG3810|consen 67 DYLRYKPVVVLQALSGVPVWIMLVFGPSVKAMQVLEFFYGPATAAE-IAYYSYIYS---KVDPEMYKRVTGYCRAAFLVG 142 (433)
T ss_pred hhhhcceeeeeeccchhHHHHHHHhcCCchheeeehhhcChHHHHH-Hhhhheeee---ecCHHHHHHHHHHhHHHHHHH
Confidence 4444567777776777777788888899999999999999987765 567899999 899999999999999999999
Q ss_pred HHHHHHHHhHH------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCcccc
Q psy13784 82 LLQVYFMGSLL------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGD 155 (388)
Q Consensus 82 ~~~~~~~~~~~------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (388)
...|..++..+ ++...-.+......+...+..+ +|..+|-+..+.+.++. ...+.+... ...+
T Consensus 143 ~~~g~vlaQlLvs~~~~sy~~LN~ISL~~~~ia~~~A~f-LP~v~rSl~f~~~~~~~-------~v~~~e~~~---~~~~ 211 (433)
T KOG3810|consen 143 KFVGSVLAQLLVSLETLSYTTLNYISLAEVTIAVLLALF-LPRVKRSLYFHRLEDKI-------SVGDLEEMN---PQAS 211 (433)
T ss_pred hHHHhHHHHHHhhhcccchhhhchhhHHHHHHHHHHHhh-CCCCchhhhhhcccccc-------eeccchhcC---ccch
Confidence 99998888887 4555555555555555555555 88776543332222210 000000000 0000
Q ss_pred ccc-cccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCC--CCcHHHHHHHHHHHHHH
Q psy13784 156 AES-GAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFH--LLNPYFITVIGGLIIFA 232 (388)
Q Consensus 156 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s--~~~~~~~~~~~~~~~~~ 232 (388)
..+ .+.....-.....+..++|...+..++ .....++++.+..|...+-++..-+ ..--|..-.+..+.+++
T Consensus 212 ~~~~l~~~~~~l~~~l~~~y~np~ll~WSlW-----wAl~scg~~QV~nY~Q~LW~~~~~~~~~vyNG~veAv~tlLGa~ 286 (433)
T KOG3810|consen 212 YMSYLRGAFVLLWRDLQECYSNPRLLKWSLW-----WALASCGYYQVTNYTQILWKEVAPNPANVYNGAVEAVSTLLGAI 286 (433)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCchhhhhHHH-----HHHhhchhHHHHHHHHHHHHhhCCCchhhhcCHHHHHHHHHHHH
Confidence 000 000000112234455566655444433 3334455677778877777665311 11223445566677888
Q ss_pred HHHhhheeecccCCchHH--HHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhh
Q psy13784 233 SVISISFILPHTGVKPLS--AASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLML 310 (388)
Q Consensus 233 ~~~~~g~l~d~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (388)
+.+..|.+--++.|..-+ ..+....+..++.+. ...+-|+..+...++...+.... ++....+
T Consensus 287 ~~~~~g~l~i~w~r~g~~ll~~~s~~~agllf~m~--------------~t~~Iw~~Ya~yvlfr~~y~l~i-tiA~~~i 351 (433)
T KOG3810|consen 287 AALAAGYLNINWNRWGDLLLAVGSAVQAGLLFIMA--------------QTQHIWVCYAGYVLFRVIYQLTI-TIATFQI 351 (433)
T ss_pred HHHHHHheeeccchhhHHHHHHHHHHhhhhhhhhh--------------cccceehhhhhHHHHHhhHhhhh-hHHHHHH
Confidence 888999886655554322 222222222222221 12345666666666666665554 4444556
Q ss_pred ccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc------------cchhhHHHHHHHHHHHHh
Q psy13784 311 GEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG------------NGIFFFYGLVAAIGTAHV 367 (388)
Q Consensus 311 ~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g------------~~~~~~~~~~~~~~~~~~ 367 (388)
++....+.-|..+|+..+..-+-..+-..+. .|..| ..-|.+.+++.++.....
T Consensus 352 A~nL~~e~~gLvFGiNTFvAl~lQsilT~iV---vd~~g~~L~ir~Q~~~Y~~Yf~v~~~i~~~~~~~~ 417 (433)
T KOG3810|consen 352 ARNLSSELFGLVFGINTFVALILQSILTLIV---VDDRGLGLDIRTQFVVYSSYFIVLGVIFLIGFGIE 417 (433)
T ss_pred HHhhhhhhheeeeehHHHHHHHHHHhheEEE---EcccccCCCcceeEEEEeehHHHHHHHHHHHHHHH
Confidence 6666777778888888777665555443322 33211 234666777777765543
|
|
| >PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) [] | Back alignment and domain information |
|---|
Probab=98.67 E-value=6.1e-08 Score=85.60 Aligned_cols=162 Identities=16% Similarity=0.022 Sum_probs=91.8
Q ss_pred HHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccc
Q psy13784 198 VNVILAYMTDFVRS-SGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIV 276 (388)
Q Consensus 198 ~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (388)
+.....+.+.++++ .|+|.++.|.+.+...+..++.+++.|.++||+|.||.++.......+....+..+...+-
T Consensus 23 ~gi~~pF~~iWL~~~~GLs~~~iG~i~s~~~~~~l~~qp~~G~i~Dklg~kK~Ll~~i~~l~~l~~pff~~v~~pl---- 98 (412)
T PF01306_consen 23 WGIFLPFFPIWLTQVAGLSGTEIGIIFSAGSLFALLAQPVYGFISDKLGLKKHLLWFIAILLLLFGPFFIYVFGPL---- 98 (412)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHTHHHHHHHHHHCTTCSHHHHHHHHHHHTCHHHHHHTHHHH----
T ss_pred HHHHHHHHHHHHccccCCCHHHHHHHHHHHHHHHHHHHHhHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 56667777888875 7999999999999999999999999999999999777655444332222111111100000
Q ss_pred cccccccchHHHHHHHHHHHHHHhccccchhhhhccCCch---hhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccchh
Q psy13784 277 NFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPM---EVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGIF 353 (388)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~ 353 (388)
...+.+... .+.....+..+.+.. =+.|.+-+ +..+--+|=..+.+.+|.+++..+.|.+.+..+...+
T Consensus 99 ---l~~n~~lg~---iig~i~l~~~f~~~~--~~~Ea~~er~sr~~~feYG~~R~wGSig~ai~s~~~G~L~~i~p~~~f 170 (412)
T PF01306_consen 99 ---LQSNFWLGA---IIGGIYLGLVFNAGV--PLSEAYAERVSRRNGFEYGRARMWGSIGFAIASLLAGILFNINPNIIF 170 (412)
T ss_dssp ---HHTT-HHHH---HHTTTTTTTTTTTHH--HHHHHHHHHHHHHHSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHH---HHHHHHHHHHHcccc--hHHHHHHHHHHHHhcCCcchHHHHhhHHHHHHHHHhheeeeeCccHHH
Confidence 000111111 111111122222221 11233222 2245567778889999999999999999886556677
Q ss_pred hHHHHHHHHHHHHhheec
Q psy13784 354 FFYGLVAAIGTAHVLAYL 371 (388)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~ 371 (388)
++.....++..++.....
T Consensus 171 wi~s~~~~il~lll~~~~ 188 (412)
T PF01306_consen 171 WIASAAAIILLLLLLLLK 188 (412)
T ss_dssp HHHHHHHHHHHHHHHSS-
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 765555554444444444
|
The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A. |
| >KOG2533|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=9.4e-07 Score=80.73 Aligned_cols=150 Identities=14% Similarity=0.076 Sum_probs=112.4
Q ss_pred HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHH
Q psy13784 211 SSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAA 290 (388)
Q Consensus 211 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (388)
+.++...+.+...+++.++.+++.+.++.+.||++-.+.+....++..+..++... ..+...+++
T Consensus 75 dl~~~~~~l~~~~t~F~v~Yii~~~p~~~L~~r~~ls~~l~~~~~~w~~~~~~~~~---------------~~s~~~~ia 139 (495)
T KOG2533|consen 75 DLKLVGNQLGVLDTVFYVGYIIGQFPSGLLGDRFPLSKGLSVSGILWGLFGFLTAA---------------VHSFPGLIA 139 (495)
T ss_pred ccchhhhhhhhHHHHHHHHHHHHHhhHHHHHHhCChHHHHHHHHHHHHHHHHHHHH---------------HhhhHHHHH
Confidence 34555677899999999999999999999999999555444333333222222211 133444555
Q ss_pred HHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHh------hcc-cchhhHHHHHHHHH
Q psy13784 291 LVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHL------ALG-NGIFFFYGLVAAIG 363 (388)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~------~~g-~~~~~~~~~~~~~~ 363 (388)
+-++.+.+-.+..|....++..-+.+++|+.-+|+.++...+|+++|+.+...+.+ ..| .+.|++-+++++..
T Consensus 140 lr~llGl~es~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~ 219 (495)
T KOG2533|consen 140 LRFLLGLFESGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVL 219 (495)
T ss_pred HHHHHHHHhcccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHH
Confidence 55666666666668888999999999999999999999999999999999888643 334 67888999999999
Q ss_pred HHHhheeccCCC
Q psy13784 364 TAHVLAYLPETK 375 (388)
Q Consensus 364 ~~~~~~~~~~~~ 375 (388)
+++.++++|+..
T Consensus 220 gi~~f~~lp~~P 231 (495)
T KOG2533|consen 220 GIVVFFFLPDNP 231 (495)
T ss_pred HheEEEEecCCh
Confidence 988888888643
|
|
| >KOG2325|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=7.9e-07 Score=79.77 Aligned_cols=152 Identities=9% Similarity=-0.056 Sum_probs=107.1
Q ss_pred cCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCC-chHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHH
Q psy13784 212 SGFHLLNPYFITVIGGLIIFASVISISFILPHTGV-KPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAA 290 (388)
Q Consensus 212 ~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (388)
.+-+.+-.|+......++..++++..|+...|.+. |+.++.+.+++.++.++........+ +..+ .++.
T Consensus 66 ~~A~~~ffG~viaa~slg~~i~~liF~~Ws~k~~~~k~Pli~s~ii~~~g~llY~~l~~~~~---------~~~y-~mL~ 135 (488)
T KOG2325|consen 66 PTATATFFGLVIAASSLGHAIFSLIFGIWSNKTGSVKKPLIVSFLIAIIGNLLYLALAYVPN---------GVKY-LMLV 135 (488)
T ss_pred CCCCcchhhHHHHHHHHHHHhcchhhcccccccCCcccCHHHHHHHHHHHHHHHHHHHhccc---------chHH-HHHH
Confidence 45556778999999999999999999999999886 78888999999999998854333222 1222 2222
Q ss_pred HHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh------------cc--cchhhHH
Q psy13784 291 LVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA------------LG--NGIFFFY 356 (388)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~------------~g--~~~~~~~ 356 (388)
.-++.+. +.+.....-.++++....++|.++++..+....+|.++||.+...+... ++ ..+.|+.
T Consensus 136 ~R~l~Gv-g~~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m 214 (488)
T KOG2325|consen 136 ARILTGV-GVGNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLM 214 (488)
T ss_pred HHHHcCc-CcccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHH
Confidence 2333322 2233356668888887778899999988887788888888776554321 12 3566777
Q ss_pred HHHHHHHHHHhheeccCC
Q psy13784 357 GLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 357 ~~~~~~~~~~~~~~~~~~ 374 (388)
+.+.++..+.....++|.
T Consensus 215 ~i~~i~~~v~i~~~f~E~ 232 (488)
T KOG2325|consen 215 AILWIIYIVIILFFFKEV 232 (488)
T ss_pred HHHHHHHHHHHHhheeec
Confidence 788888777777777664
|
|
| >PRK10429 melibiose:sodium symporter; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=5e-06 Score=77.12 Aligned_cols=140 Identities=7% Similarity=0.018 Sum_probs=88.8
Q ss_pred HHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHHHHHHHhhheeec----ccCCc-hHHHHhhHHHHHHHHHHHHHhhcc
Q psy13784 198 VNVILAYMTDFVRS-SGFHLLNPYFITVIGGLIIFASVISISFILP----HTGVK-PLSAASGMGIALSMLVIGTYLLFE 271 (388)
Q Consensus 198 ~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~ 271 (388)
...+..|.+.|+.+ .|+++...+....+.-+...+..++.|.++| |+||| +.+..+....+++..++.. .+
T Consensus 22 ~~~~~~~l~~yyt~v~Gls~~~vg~i~~i~ri~dai~dp~~G~lsD~t~sr~Grrrp~il~g~i~~~i~~~llf~---~p 98 (473)
T PRK10429 22 IGIVYMYLMYYYTDVVGLSVGLVGTLFLVARIWDAINDPIMGWIVNNTRSRWGKFKPWILIGTLANSVVLFLLFS---AH 98 (473)
T ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhchheeehhcCCCCCCCcchhHhhhhHHHHHHHHHHHc---CC
Confidence 34556677777764 5999999999999999999999999999999 45884 4555566666665544421 11
Q ss_pred cCccccccccc-cchHHHHHHHHHHHHHHhccccchhhhhccCC-chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy13784 272 KAPIVNFEWGF-FNLIPLAALVLNLVASSVGFLPIPYLMLGEIF-PMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA 347 (388)
Q Consensus 272 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 347 (388)
+. +.. ......+...+...++.... ....++..|+. ++++|....+.-....++|+.+.+.+...+.+.
T Consensus 99 ~~------~~~~~~~~~~~~~~l~~~~~t~~~-ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~ 169 (473)
T PRK10429 99 LF------EGTAQYVFVCVTYILWGMTYTIMD-IPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNY 169 (473)
T ss_pred CC------CccHHHHHHHHHHHHHHHHHHHHc-chHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 000 11122222223333333332 33447888988 588899999987777788777776665544443
|
|
| >PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-09 Score=98.47 Aligned_cols=144 Identities=15% Similarity=0.140 Sum_probs=99.2
Q ss_pred HHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHH
Q psy13784 219 PYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVAS 298 (388)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (388)
.+.......++..+|+++.|++.||+|||+.+..+..+..++.++..+.. ...++..+....+..+..
T Consensus 48 ~~~~~~~~~~g~~~G~~~~g~~~d~~GRk~~~~~~~~~~~i~~~~~~~~~------------~~~~~~~~~~~R~~~G~~ 115 (451)
T PF00083_consen 48 SSLLTSSFFIGAIVGALIFGFLADRYGRKPALIISALLMIIGSILIAFAP------------SYNNFWMLLIGRFLIGFG 115 (451)
T ss_pred HHHHHHHHHhhhcccccccccccccccccccccccccccccccccccccc------------cccccccccccccccccc
Confidence 46778888999999999999999999999999999999888888876611 001333344444444444
Q ss_pred HhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc---ccchhhHHHHHHHHHHHHhheeccCC
Q psy13784 299 SVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL---GNGIFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 299 ~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~---g~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
..+..+....+..|..|++.|+...++.+....+|..++..+.-.+.+.. ++........+..+..++...++||+
T Consensus 116 ~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pES 194 (451)
T PF00083_consen 116 IGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPES 194 (451)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 44455677799999999999999999999888888877766554332211 23334444443333334445667765
|
Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane |
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=98.53 E-value=4.5e-07 Score=79.33 Aligned_cols=92 Identities=22% Similarity=0.342 Sum_probs=68.0
Q ss_pred CCCchhHHHH-HHHHHHHHHHHHHhhcchh-----------------HHHHHHHHHhhhccccccchhhhhcccccccCc
Q psy13784 3 KLGRKPAIIL-IGIVGIIGWLLITYSLTIT-----------------NLFIGRFLTGVSEGLSASPATIYIAESIMVQNT 64 (388)
Q Consensus 3 r~Grr~~~~~-~~~~~~~~~~~~~~~~~~~-----------------~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~ 64 (388)
||||||.++. +.....++.++.+++.++. .++++--+.=++.-.....+-+++.| ...+
T Consensus 97 r~GRRRPfI~~~s~~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~ra~L~D---l~~~ 173 (498)
T KOG0637|consen 97 RYGRRRPFILAGSLLIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPCRALLAD---LARG 173 (498)
T ss_pred ccccccchHHHhhHHHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhHHHHHHH---hccC
Confidence 7899987655 4555567777777775543 34445555556666777788999999 7776
Q ss_pred hhhhH-HHHHHHHHHHHHHHHHHHHHhHHhHHHH
Q psy13784 65 KLRGS-LATWATTARAFGLLQVYFMGSLLRYRKV 97 (388)
Q Consensus 65 ~~r~~-~~~~~~~~~~~G~~~~~~~~~~~~w~~~ 97 (388)
+++.+ +.+......++|..+|...+.+.+|+-.
T Consensus 174 d~~~~~Ans~f~~f~avGnvLGY~~g~y~~~~~~ 207 (498)
T KOG0637|consen 174 DAKKTRANSVFSFFMAVGNVLGYALGSYLGLYKI 207 (498)
T ss_pred hhhhhccchhHHHHHHhcceeeeecccccCceEE
Confidence 66666 9999999999999999999987766543
|
|
| >PF13000 Acatn: Acetyl-coenzyme A transporter 1; InterPro: IPR024371 Acetyl-coenzyme A transporter 1 (also known as acatn) is a multipass transmembrane protein that appears to promote 9-O-acetylation in gangliosides [, ] | Back alignment and domain information |
|---|
Probab=98.53 E-value=3.6e-05 Score=68.65 Aligned_cols=45 Identities=11% Similarity=-0.055 Sum_probs=35.4
Q ss_pred ccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy13784 303 LPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA 347 (388)
Q Consensus 303 ~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 347 (388)
.....++-+.+..|..-|+.+.+.|+..|+|+-.-..+.=++.|.
T Consensus 423 FVai~AFharISDP~IGGTYMTLLNTvSNLGGtWP~~~vL~lVD~ 467 (544)
T PF13000_consen 423 FVAIMAFHARISDPAIGGTYMTLLNTVSNLGGTWPRTFVLWLVDY 467 (544)
T ss_pred HHHHHHHHhhccCcccchHHHHHHHHHHhcCCCchHHHHHHHhhh
Confidence 344457788899999999999999999999997766665555543
|
This entry represents acatn and its homologues.; GO: 0008521 acetyl-CoA transporter activity, 0016021 integral to membrane |
| >PRK11462 putative transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.6e-06 Score=75.83 Aligned_cols=142 Identities=11% Similarity=-0.009 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecc----cCCchH-HHHhhHHHHHHHHHHHHHhhccc
Q psy13784 199 NVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVISISFILPH----TGVKPL-SAASGMGIALSMLVIGTYLLFEK 272 (388)
Q Consensus 199 ~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 272 (388)
.....|...++. ..|+++...+....+.-+...+.-++.|.++|| +|||+. +..+.+..+++..++.. ....
T Consensus 26 ~~~~~~l~~fyt~~~Gl~~~~~g~i~~~~ri~Dai~Dp~~G~~~D~t~~r~Gr~rp~il~g~i~~~i~~~llf~--~p~~ 103 (460)
T PRK11462 26 DNVMLYMMFFYTDIFGIPAGFVGTMFLVARALDAISDPCMGLLADRTRSRWGKFRPWVLFGALPFGIVCVLAYS--TPDL 103 (460)
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHhhhheehhccCCCCCCCcchhHhHHHHHHHHHHHHHHh--CCCC
Confidence 445566666665 459999999999999999999999999999997 566554 44555666666554422 1110
Q ss_pred CccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCc-hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 273 APIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFP-MEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
. .........+...++..++.....|. .++.+|+.+ +++|++..+.-.....+|..+++.+...+.+..|
T Consensus 104 s------~~~~~~y~~~~~~~~~~~~t~~~ipy-~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g 174 (460)
T PRK11462 104 S------MNGKMIYAAITYTLLTLLYTVVNIPY-CALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIG 174 (460)
T ss_pred C------cchHHHHHHHHHHHHHHHHHHHhccH-HHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 0 00111222333333333443333333 378888876 6889999999999999998888887766665543
|
|
| >KOG2816|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.3e-06 Score=76.63 Aligned_cols=137 Identities=16% Similarity=0.091 Sum_probs=108.5
Q ss_pred HHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccc
Q psy13784 226 GGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPI 305 (388)
Q Consensus 226 ~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (388)
.++..++.+...|.++||+|||..+........+......+ ..|+.+. ..-..+++ ......
T Consensus 71 ~~~~~~i~s~~iG~lSD~~grk~~L~~~~~~~~l~~~~~~~----------------~~~~~~~-~~~l~g~~-~~~~s~ 132 (463)
T KOG2816|consen 71 AGLLTLISSPLIGALSDRYGRKVVLLLPLFGTILPALCLLF----------------QGYWFFL-LLGLSGGF-SAIFSV 132 (463)
T ss_pred hHHHHHHHHhhhHHhhhhhhhhhhHHHHHHHHHHhHHHHHH----------------HHHHHhh-hcccccch-hhhhhh
Confidence 36788888999999999999999998888877777777655 2233333 22222222 233456
Q ss_pred hhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheeccCCCCCCHH
Q psy13784 306 PYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPETKGKSLE 380 (388)
Q Consensus 306 ~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (388)
.+++++|....+.|....|+.+.....+..++|...+.+.+..| ...+.+..+..++..+....++||+..++.+
T Consensus 133 ~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl~~~~~ 208 (463)
T KOG2816|consen 133 GFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESLQEKER 208 (463)
T ss_pred hhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhccccccCcccc
Confidence 67899999999999999999999999999999999999999999 8888888888888888888899987654433
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=7.9e-06 Score=69.94 Aligned_cols=304 Identities=12% Similarity=-0.064 Sum_probs=156.3
Q ss_pred CCCchhHHH-HHHHHHHHHHHHHHhh-----------cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHH
Q psy13784 3 KLGRKPAII-LIGIVGIIGWLLITYS-----------LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSL 70 (388)
Q Consensus 3 r~Grr~~~~-~~~~~~~~~~~~~~~~-----------~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~ 70 (388)
|+||||..+ -+..+.+......+.- ++...+...-++.-+..+.--.+...+.-. ...+++.|-+
T Consensus 94 ~~GrrksWvvp~q~llG~~mllLs~~v~~~~g~ng~~p~v~~lt~~f~LLnflaAtQDIAVDgwALt---mLs~e~lgya 170 (510)
T KOG3574|consen 94 RFGRRKSWVVPCQYLLGLFMLLLSYLVDRGLGGNGGLPNVVALTLLFLLLNFLAATQDIAVDGWALT---MLSRENLGYA 170 (510)
T ss_pred hhccccceeeehHHHHHHHHHHHhhCCCcccccCCCCcchHHHHHHHHHHHHHHhhhhhhhhHHHHH---hcCHhhcCch
Confidence 899999733 3444444444333322 334444445566677777777777788778 7888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH-----------hHH---------HHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChh
Q psy13784 71 ATWATTARAFGLLQVYFMGSLL-----------RYR---------KVAAMAAIFSALGTILITFIIPESPAWLNSKGRRG 130 (388)
Q Consensus 71 ~~~~~~~~~~G~~~~~~~~~~~-----------~w~---------~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~ 130 (388)
......+.+.|.+++..+--.+ +|. .-.++.+....+.-.+..++-+|.+.- .
T Consensus 171 ST~q~Vg~~~GyfL~~~ifLaL~s~dF~N~y~rs~P~~~g~ItL~gy~~fwg~~~~vat~Lv~~~kke~~~~-~------ 243 (510)
T KOG3574|consen 171 STCQSVGQTAGYFLGNVVFLALESPDFCNTYLRSIPLDQGFITLAGYLWFWGALFIVATTLVALLKKENDES-V------ 243 (510)
T ss_pred hHHHHHHHhhhHHhhcceeeEecChhhhhHHHhcCcCccceEEhhHHHHHHHHHHHHHHHHHHHhcCCCchh-h------
Confidence 8888888888888886554333 222 122233333334434444312222110 0
Q ss_pred hHHHHHHHhcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy13784 131 DAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR 210 (388)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (388)
.++.+...+...+-.++.++-|..+....+....-.. +..--...+.-+.
T Consensus 244 -------------------------~~e~~~~i~~~yk~l~~vLklk~v~~la~i~lt~K~g-----f~a~da~t~LkLl 293 (510)
T KOG3574|consen 244 -------------------------DEELELGIHESYKLLRDVLKLKSVRWLAGILLTGKLG-----FQAADALTSLKLL 293 (510)
T ss_pred -------------------------hhhhhcCHHHHHHHHHHHHcCccHHHHHHHHHHHHHH-----hhhhhhccchHHH
Confidence 0000001112223445666666555433333322222 2233333444455
Q ss_pred HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHH----hhHHHHHHHHHHHHHhhcccCccccccccccchH
Q psy13784 211 SSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAA----SGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLI 286 (388)
Q Consensus 211 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (388)
+.|++..+-+....+..-.+++.....|++...-.+-....- -.........+... .+.-+..+.........
T Consensus 294 e~Gv~ke~Lal~~v~~~plqI~l~~~~gk~ta~~~pl~~~lka~~~R~~~~~~~t~Lv~~---~~~~~~~~G~~~~~~~i 370 (510)
T KOG3574|consen 294 EHGVPKEELALIAVPLVPLQIALPLYIGKWTAGPRPLNVFLKAVPYRLGGGLVQTALVWW---TPTLGHSDGTFPRGYYI 370 (510)
T ss_pred HcCCChhHheeeeeehhhHHHhhhhhheeecCCCCcchHHHHhhhHHHHHHHHHHHHHhh---hcccccCCCceeechHH
Confidence 779987777766655555666666666655443221111111 11111111111111 11111111111111222
Q ss_pred HHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 287 PLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
..+....+...+........++..+++.+|...|+.+.+.|+..++|+-.-..+..++.|..+
T Consensus 371 l~i~~y~~~~~~~ts~fv~~maf~aqisdp~iggTymTlLNTLsnLGg~wp~tv~l~l~D~lt 433 (510)
T KOG3574|consen 371 LLITSYAFHQVFVTSMFVSGMAFHAQISDPAIGGTYMTLLNTLSNLGGNWPGTVALWLADGLT 433 (510)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccCccHHHHHHHHHHhcCCcHHHHHHHhcccCc
Confidence 222222233333333334445788999999999999999999999999887777777776543
|
|
| >PF13347 MFS_2: MFS/sugar transport protein | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.8e-06 Score=79.09 Aligned_cols=167 Identities=13% Similarity=0.096 Sum_probs=106.3
Q ss_pred HHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHHhhheeec----ccCCchHH-HHhhHHHHHHHHHHHHHhhcccC
Q psy13784 200 VILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVISISFILP----HTGVKPLS-AASGMGIALSMLVIGTYLLFEKA 273 (388)
Q Consensus 200 ~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d----~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 273 (388)
....|.+.++. ..|+++...+.......+.+.+..++.|.++| |+|||+.. ..+....+++..++.........
T Consensus 19 ~~~~~~~~f~~~~~gl~~~~~g~i~~~~~i~dai~dp~~G~~sDr~~tr~Grrrp~~l~g~i~~~~~~~llf~~~p~~~~ 98 (428)
T PF13347_consen 19 LLSSYLLYFYTDVLGLSPALAGLILLVGRIWDAITDPLIGYLSDRTRTRWGRRRPWILIGAILLALSFFLLFSPPPAGLS 98 (428)
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhhcCCcEEEEEeeecccccccceEeehhhHHHHHHHHHhhccccchhh
Confidence 34445555554 55999999999999999999999999999999 78877655 45666666666665331000000
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCc-hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc---
Q psy13784 274 PIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFP-MEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG--- 349 (388)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--- 349 (388)
.........+...++..++.....| ..++.+|..+ +++|....+.-.....+|..+...+.+.+.+..+
T Consensus 99 ------~~~~~~~~~~~~~l~~~~~t~~~i~-~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~ 171 (428)
T PF13347_consen 99 ------FTAKLVWLFVFYILFDIAYTFVQIP-YNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGD 171 (428)
T ss_pred ------hhhHHHHHHHHHHHHHHhhhhccCc-hhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCc
Confidence 0011112233333444444444333 3488899987 4689999999999999999888888887776555
Q ss_pred -----cchhhHHHHHHHHHHHHhheeccC
Q psy13784 350 -----NGIFFFYGLVAAIGTAHVLAYLPE 373 (388)
Q Consensus 350 -----~~~~~~~~~~~~~~~~~~~~~~~~ 373 (388)
.....+.+++..++.++..+..||
T Consensus 172 ~~~~~~~~~~v~~iv~~v~~~i~~~~~ke 200 (428)
T PF13347_consen 172 TSNGYRWMALVLAIVGLVFFLITFFFVKE 200 (428)
T ss_pred cchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 122334444445555555556666
|
|
| >PF05631 DUF791: Protein of unknown function (DUF791); InterPro: IPR008509 This family consists of several eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.4e-05 Score=67.23 Aligned_cols=157 Identities=19% Similarity=0.021 Sum_probs=102.2
Q ss_pred HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccccccccc
Q psy13784 204 YMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFF 283 (388)
Q Consensus 204 ~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (388)
|.-..+++.|++..+...++........+...+.|.+.||+|||+..+..+++..++++.... +
T Consensus 56 Y~Y~LY~~yg~~~~qIa~Lf~~Gf~Ss~i~g~~~G~laD~~Grk~~cl~~cily~~scl~k~~----------------~ 119 (354)
T PF05631_consen 56 YLYALYESYGFSEHQIAILFVAGFASSAIFGTFVGSLADRYGRKKACLLFCILYSLSCLTKHS----------------S 119 (354)
T ss_pred hhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhc----------------c
Confidence 333455677999999999999999999999999999999999999988888888888765532 2
Q ss_pred chHHHHHHHHHHHHHHhccccchh-hhhcc----CCchhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHhhcc---cchhh
Q psy13784 284 NLIPLAALVLNLVASSVGFLPIPY-LMLGE----IFPMEVKGVAAGLATC-LAYIFGFFAVKTWPTLHLALG---NGIFF 354 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~----~~p~~~r~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g---~~~~~ 354 (388)
+...+..--+.++.......+..- -++.| -+|++..+...+.... .+.+-.+.+..+...+.+..+ ..+|.
T Consensus 120 ~~~~L~~GRvlgGiaTSLLfS~FEsW~V~Eh~~~g~~~~~L~~tF~~~tf~~n~~vAI~aGv~a~~l~~~~~~g~vaPF~ 199 (354)
T PF05631_consen 120 NYPVLLLGRVLGGIATSLLFSAFESWMVHEHNKRGFPQEWLSDTFSLATFFGNGVVAIGAGVVANVLADWFGFGPVAPFD 199 (354)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHhHHHHHHHhHHHHHHHHHhCCCCcchHH
Confidence 233333332333322222222111 22333 4677767777776663 344555666666666667655 56777
Q ss_pred HHHHHHHHHHHHhheeccCCCC
Q psy13784 355 FYGLVAAIGTAHVLAYLPETKG 376 (388)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~ 376 (388)
....+..++.+++....+|..+
T Consensus 200 ~a~~~l~~~~~~I~~~W~ENyg 221 (354)
T PF05631_consen 200 AAIVLLAVAAVLILKTWPENYG 221 (354)
T ss_pred HHHHHHHHHHHHHHhcccccCC
Confidence 7777777777766655666543
|
|
| >TIGR00788 fbt folate/biopterin transporter | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.9e-06 Score=79.47 Aligned_cols=166 Identities=10% Similarity=-0.041 Sum_probs=99.4
Q ss_pred HHHhhhHHHHHHHHHHHHH-HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccC-----CchHHHHhhHHHH-HHHHHH
Q psy13784 192 FQQFSAVNVILAYMTDFVR-SSGFHLLNPYFITVIGGLIIFASVISISFILPHTG-----VKPLSAASGMGIA-LSMLVI 264 (388)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~-~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----~~~~~~~~~~~~~-~~~~~~ 264 (388)
+.+... .......+.+++ ++|.+..+.+.......+...+-.+ .|.++||++ ||+.+..+.++.. ++...+
T Consensus 36 ~~qGl~-~l~~~~~~~~l~~~lg~s~~~i~~~~sl~~lpw~~K~l-~g~l~D~~~i~G~rRr~~l~~~~~l~~~~~~~~l 113 (468)
T TIGR00788 36 FVKGIA-GLMRLPLSPMLTDDLGLDGARYQRLVGLSSLGWALKPF-AGVMSDTFPLFGYTKRWYLVLSGLLGSAILYGLL 113 (468)
T ss_pred HHhhHH-HHhhhhhhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHhcCCCCccchHHHHHHHHHHHHHHHHhc
Confidence 334444 444444455554 6799998888888888887777555 999999996 6666666654442 221111
Q ss_pred HHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHH---HHHHHHHHHHHHHHHHHHh
Q psy13784 265 GTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVA---AGLATCLAYIFGFFAVKTW 341 (388)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~---~~~~~~~~~~g~~~~~~~~ 341 (388)
.. . .+.........+...+...........+..|..+ +.+... .+......++|..+++.+.
T Consensus 114 ~~-----~---------~~~~~~~~~~~~l~~~~~a~~dv~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~ 178 (468)
T TIGR00788 114 PG-----K---------VSSAKVAAAFIFLAALAKALYDVLVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLG 178 (468)
T ss_pred cc-----c---------cchHHHHHHHHHHHHHHHHHHHHhHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHH
Confidence 11 0 1111122212222333333334556688888888 444433 3344444568999999999
Q ss_pred HHHHhhcc-cchhhHHHHHHHHHHHHhheeccCCC
Q psy13784 342 PTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 342 g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (388)
|.+.+..+ ...+++.+.+.++. .+...+.+|++
T Consensus 179 G~l~~~~~~~~~f~~~a~l~ll~-~~~~~~~~E~~ 212 (468)
T TIGR00788 179 GPLLDKTLTRILFLITAALLLLQ-LFVSNLSKERR 212 (468)
T ss_pred HHHHHhcCcchHHHHHHHHHHHH-HHHHHhccccc
Confidence 99999888 66777777776666 33445667753
|
The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity. |
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.6e-06 Score=77.51 Aligned_cols=155 Identities=9% Similarity=-0.018 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccc
Q psy13784 198 VNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVN 277 (388)
Q Consensus 198 ~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (388)
...+.+++-..+++.|-.+.--+......-.+.++.-++.+++.+|+|+-+++..++.+..+-.+.+...
T Consensus 387 ~~lv~tFLfWHled~~~~~~LfGv~~a~~~~gEI~~~ffs~klI~kiGHv~v~~lgLa~~~~Rf~~~S~L---------- 456 (618)
T KOG3762|consen 387 VGLVFTFLFWHLEDLGGIKTLFGVVSALCHAGEILFYFFSFKLIEKIGHVNVMYLGLACNVGRFLYYSYL---------- 456 (618)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeehhhhhccchHHHHHHHHHHHHHhcccceeeehhhHHHHHHHHHHHh----------
Confidence 3445555555667777656666777777788889999999999999999999988888888777777552
Q ss_pred ccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHH-HHHHHHHHHHhHHHHhhcc-cchhhH
Q psy13784 278 FEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLA-YIFGFFAVKTWPTLHLALG-NGIFFF 355 (388)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~-~~g~~~~~~~~g~l~~~~g-~~~~~~ 355 (388)
+++|..+..=.+-.......+ ...-++++...||+.|.++.++..... .+|-.+|++++|.+.+.++ ...|.+
T Consensus 457 ----~n~W~vLPieilqgit~aliW-aa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~ 531 (618)
T KOG3762|consen 457 ----QNPWMVLPIEILQGITHALIW-AAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRI 531 (618)
T ss_pred ----cCchheeeHHHHHHHHHHHHH-HHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHH
Confidence 344554444444444444444 344489999999999999999987665 5788999999999999999 777888
Q ss_pred HHHHHHHHHHHh
Q psy13784 356 YGLVAAIGTAHV 367 (388)
Q Consensus 356 ~~~~~~~~~~~~ 367 (388)
+++.+++..++.
T Consensus 532 ~giAcl~~l~~~ 543 (618)
T KOG3762|consen 532 FGIACLVTLALF 543 (618)
T ss_pred HHHHHHHHHHHH
Confidence 777777655543
|
|
| >KOG0252|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=6.5e-07 Score=78.44 Aligned_cols=122 Identities=7% Similarity=-0.045 Sum_probs=87.8
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHH
Q psy13784 214 FHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVL 293 (388)
Q Consensus 214 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (388)
+++...+.......++.+.|+++.|++.||+|||++....++++.++.+..++.. ..+ +.....+.+.+.-.
T Consensus 81 ~ps~i~~~Vn~~A~vGti~GQl~FG~lgD~~GRK~vYG~~liImIi~t~~~~~s~--~~~------~~~~~m~~L~~~R~ 152 (538)
T KOG0252|consen 81 YPSGVLALVNAAALVGTIFGQLFFGWLGDKFGRKKVYGKELIIMIICSALSGLSV--GTT------SPLGVMMTLCFFRF 152 (538)
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhHHHHHHHHHHHHhccCC--CCC------CCcchhhHHHHHHH
Confidence 5556677888888999999999999999999999999988888888887554411 111 11122333334444
Q ss_pred HHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHH
Q psy13784 294 NLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPT 343 (388)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~ 343 (388)
..+....+=+|+..+.++|....+.||+-.+...+.+.+|...|..+.-.
T Consensus 153 ~LGiGIGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~I 202 (538)
T KOG0252|consen 153 LLGIGIGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALI 202 (538)
T ss_pred HhhccccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHH
Confidence 44444455579998999999999999998888877777766655554433
|
|
| >PF03825 Nuc_H_symport: Nucleoside H+ symporter | Back alignment and domain information |
|---|
Probab=98.37 E-value=5.9e-06 Score=74.23 Aligned_cols=127 Identities=17% Similarity=0.096 Sum_probs=81.9
Q ss_pred hHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCC-chHHHHhhHHHHHHHHHHHHHhhcccCcc
Q psy13784 197 AVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGV-KPLSAASGMGIALSMLVIGTYLLFEKAPI 275 (388)
Q Consensus 197 ~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (388)
.......|.+.++++.|+|..+.+...+...+..+++.++.|.++||.++ |+.+.+..++.++.......
T Consensus 17 ~~G~~~p~~~~~L~~~G~s~~qIG~l~a~~~~~~i~~~~~~g~~aDr~~~~~~~l~~~~l~~~~~~~~~~~--------- 87 (400)
T PF03825_consen 17 AYGAFLPYLPLYLESRGFSGTQIGILLAVGPLARIVSPPFWGAIADRFGSAKRILALLSLLSALALLLLAF--------- 87 (400)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhHHHHHHHHHHHHHHHHHHHHH---------
Confidence 35667788899999999999999999999999999999999999999864 55555555544444333322
Q ss_pred ccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHH
Q psy13784 276 VNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKT 340 (388)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~ 340 (388)
....+.......+... +.....|...++..+... +++.-+|-....+.+|-.++...
T Consensus 88 -----~~~f~~~~~~~~l~~~-~~~p~~pl~dsi~~~~~~--~~~~~YG~iRlwGSiGf~~~~~~ 144 (400)
T PF03825_consen 88 -----SSSFWWLFVIMLLFSF-FFSPTMPLSDSIALSYLG--DRGKDYGRIRLWGSIGFIVAALA 144 (400)
T ss_pred -----hccHHHHHHHHHHHHH-HHccHHHHHHHHHHHHcc--cccCCCCcchhhhhHHHHHHHHH
Confidence 1122333333333332 333344666666666554 23445566666666666666544
|
|
| >KOG0253|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.1e-05 Score=67.31 Aligned_cols=148 Identities=13% Similarity=-0.002 Sum_probs=100.4
Q ss_pred HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHH
Q psy13784 211 SSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAA 290 (388)
Q Consensus 211 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (388)
.-|.+..+..++......+..+++...|.+.|++|||+......+..++.-.+-+. +.+.....++
T Consensus 107 ~w~~s~~q~~llt~~v~~gmllga~~w~l~~d~~grr~~f~~T~l~t~v~~~is~~--------------spnf~~L~~f 172 (528)
T KOG0253|consen 107 VWGPSEGQAPLLTLSVFLGMLVGAMVWGLSADTIGRRKGFNLTFLVTGVFGVISGA--------------SPNFASLCVF 172 (528)
T ss_pred hhchhhhhhhHHHHHHHhhhhhhhhhhheehhhhhcchhhhhhHHHHHHHHHhhcC--------------CCCeehhhHH
Confidence 34777788888888889999999999999999999999887777666555544433 1111222222
Q ss_pred HHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhHHHHHHHHHHHHhhee
Q psy13784 291 LVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGIFFFYGLVAAIGTAHVLAY 370 (388)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 370 (388)
-.+... +.+-.|...++-.|..|...|..-+-+. ....+|......+.-.+..+.|+..++......+.......++
T Consensus 173 ~~l~~~--g~gg~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w 249 (528)
T KOG0253|consen 173 RALWGF--GVGGLPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVW 249 (528)
T ss_pred HHHHhc--cCCCccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhh
Confidence 222222 2233577778888999998888776666 7778899888888777788888444444444444334445567
Q ss_pred ccCCC
Q psy13784 371 LPETK 375 (388)
Q Consensus 371 ~~~~~ 375 (388)
.+|..
T Consensus 250 ~~ESp 254 (528)
T KOG0253|consen 250 VYESP 254 (528)
T ss_pred cccCc
Confidence 77753
|
|
| >PRK09848 glucuronide transporter; Provisional | Back alignment and domain information |
|---|
Probab=98.28 E-value=9.3e-05 Score=68.26 Aligned_cols=62 Identities=3% Similarity=-0.053 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHHHHHHHhhheeeccc----CCchHH-HHhhHHHHHH
Q psy13784 199 NVILAYMTDFVRS-SGFHLLNPYFITVIGGLIIFASVISISFILPHT----GVKPLS-AASGMGIALS 260 (388)
Q Consensus 199 ~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----g~~~~~-~~~~~~~~~~ 260 (388)
.....|.+.|+++ .|+++.+.+....+..+...+..++.|+++||. |||+.. ..+.+...+.
T Consensus 25 ~~~~~~l~~y~~~~~gl~~~~~g~~~~~~~~~~~~~~~~~G~l~Dr~~~~~Gr~~~~~~~~~~~~~~~ 92 (448)
T PRK09848 25 AMGALFLLSYYTDVAGVGAAAAGTMLLLVRVFDAFADVFAGRVVDSVNTRWGKFRPFLLFGTAPLMIF 92 (448)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhhheeeeecCCCCCcCchHHHHHHHHHHHHH
Confidence 3344555566664 599999999999999999999999999999996 666544 4444444333
|
|
| >PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.6e-05 Score=72.96 Aligned_cols=114 Identities=15% Similarity=0.102 Sum_probs=99.8
Q ss_pred CCCCCch--hHHHHHHHHHHHHHHHHHh--------hcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHH
Q psy13784 1 MDKLGRK--PAIILIGIVGIIGWLLITY--------SLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSL 70 (388)
Q Consensus 1 sDr~Grr--~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~ 70 (388)
.||+|.| ++++.+++++.+..+...+ .++-+.+.+.-++.|+..|...+..-++.+| ..|+++.+..
T Consensus 341 ~~r~g~k~~~~l~~~l~~~~~i~~~g~~G~~~~~~g~~~~~~f~~~a~~~G~~~G~~qs~sRs~~~~---LiP~g~e~ef 417 (477)
T PF11700_consen 341 QDRFGPKTKRTLLISLILWIIIPLYGLFGFWPSFFGLKSPWEFWVLAVLIGLFMGGIQSASRSLFSR---LIPPGREAEF 417 (477)
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHHHHhhhcccCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHH---hCCCchhhHH
Confidence 4899999 8999999888777776666 6888899999999999999999999999999 9999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHH-----hHHHHHHHhHHHHHHHHHHHHhccCC
Q psy13784 71 ATWATTARAFGLLQVYFMGSLL-----RYRKVAAMAAIFSALGTILITFIIPE 118 (388)
Q Consensus 71 ~~~~~~~~~~G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~pe 118 (388)
+|++....-....+||++-+.+ +-|+.+....++.++.+++.++ +++
T Consensus 418 Fgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~-v~~ 469 (477)
T PF11700_consen 418 FGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFF-VDV 469 (477)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhh-ccc
Confidence 9999999999999999998888 5788888888887777776655 554
|
Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins. |
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.9e-05 Score=68.50 Aligned_cols=105 Identities=27% Similarity=0.333 Sum_probs=86.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcc--hhHHHHHHHHHhhhccccccchhhhhcccccccCc-hhhhHHHHHHHH-
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLT--ITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNT-KLRGSLATWATT- 76 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~-~~r~~~~~~~~~- 76 (388)
+||+|||+.+..+.....++.+.+.+..+ .+.+++.|+.+|++.+...+...+++.| +.|+ ++|+...+....
T Consensus 63 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 139 (338)
T COG0477 63 GDRYGRRKVLIIGLLLFLLGTLLLALAPNVGLALLLILRLLQGLGGGGLLPVASALLSE---WFPEATERGLAVGLVTLG 139 (338)
T ss_pred cccccchHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhhhHHHHHHHHHHHHH---hcCchhHHHHHHHHHHHH
Confidence 58999999888888776777777777776 9999999999999999999999999999 8887 788999998888
Q ss_pred HHHHHHHHHHHHHhHH------hHHHHHHHhHHHHHHH
Q psy13784 77 ARAFGLLQVYFMGSLL------RYRKVAAMAAIFSALG 108 (388)
Q Consensus 77 ~~~~G~~~~~~~~~~~------~w~~~f~~~~~~~~~~ 108 (388)
...+|..+++.++..+ +||..|..........
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (338)
T COG0477 140 AGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLLL 177 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 5888888888776665 6888666665555443
|
|
| >COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.17 E-value=0.00016 Score=65.06 Aligned_cols=143 Identities=14% Similarity=0.114 Sum_probs=97.5
Q ss_pred HHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHHHHHHHhhheeeccc----CCch-HHHHhhHHHHHHHHHHHHHhhcc
Q psy13784 198 VNVILAYMTDFVRS-SGFHLLNPYFITVIGGLIIFASVISISFILPHT----GVKP-LSAASGMGIALSMLVIGTYLLFE 271 (388)
Q Consensus 198 ~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~----g~~~-~~~~~~~~~~~~~~~~~~~~~~~ 271 (388)
......|+..++.+ .|+++..++.++.+.=+..++.-++.|.++||. ||++ .++.+.+..++...++.. ..+
T Consensus 28 ~~~~~~yLl~fYTdv~Gis~~~aG~iflv~RiiDAi~DP~~G~i~D~t~~r~GrfRP~lL~g~ip~~i~~~l~F~--~p~ 105 (467)
T COG2211 28 FGIVVLYLLFFYTDVFGLSAALAGTIFLVARIIDAITDPIMGFIVDRTRSRWGRFRPWLLWGAIPFAIVAVLLFI--TPD 105 (467)
T ss_pred HHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHhcchheeeecccccccccccHHHHHHhHHHHHHHHHHHc--CCC
Confidence 45566777777764 599999999999999999999999999999974 5544 445554555555444432 111
Q ss_pred cCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCc-hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 272 KAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFP-MEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
.. .........+...+...++.....|-. ++.+|+.+ +++|.+..+.-.....+|+.+...+.+.+....+
T Consensus 106 ~~------~~~k~~ya~vtY~l~~l~YT~vniPy~-al~~~iT~d~~ER~~l~s~R~~~~~~g~~l~~~~~~plv~~~g 177 (467)
T COG2211 106 FS------MTGKLIYALVTYMLLGLGYTLVNIPYG-ALGPEITQDPQERASLTSWRMVFASLGGLLVAVLFPPLVKLFG 177 (467)
T ss_pred cc------cCcchHHHHHHHHHHHHHHHheeCchh-hcchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 00 011223344444455555555443443 77777764 5789999999999999999999888888887665
|
|
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.006 Score=55.78 Aligned_cols=89 Identities=6% Similarity=-0.082 Sum_probs=66.2
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh----c---------------------------chhHHHHHHHHHhhhcccccc
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYS----L---------------------------TITNLFIGRFLTGVSEGLSAS 49 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~----~---------------------------~~~~~~~~r~l~G~g~g~~~~ 49 (388)
++|++|++++-.....+....+++++. + +.|...+..+...+-......
T Consensus 68 ~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~i~~~~~W~~~~FYv~~elw~~~vvS 147 (472)
T TIGR00769 68 SNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGFIAILRIWSFALFYVMAELWGSVVLS 147 (472)
T ss_pred HhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 478999999888777777666666555 1 133344455555554444444
Q ss_pred -chhhhhcccccccCchhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy13784 50 -PATIYIAESIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLL 92 (388)
Q Consensus 50 -~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 92 (388)
.-..+..| .++.+|-.|..++...+.++|.++++.+..++
T Consensus 148 ~lFW~fand---i~t~~qakRfy~l~~~ganlg~i~sg~~~~~~ 188 (472)
T TIGR00769 148 LLFWGFANQ---ITTIDEAKRFYALFGLGANVALIFSGRTIKYF 188 (472)
T ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778899 99999999999999999999999999887776
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=5.1e-05 Score=62.02 Aligned_cols=280 Identities=18% Similarity=0.149 Sum_probs=136.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhh-hcccccccCchhhhHHHHHHH----
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIY-IAESIMVQNTKLRGSLATWAT---- 75 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~-i~~~~~~~~~~~r~~~~~~~~---- 75 (388)
+||-|||+.-+.-++.+.+++ +.-.+++|-.++++|.+-|+..+..+..-.++ +.| .. ++|+.-.-+..
T Consensus 96 aDkqGRKracvtycitYiLsC-iTKhSpqYkVLmVGR~LGGiaTsLLFSaFEsWliaE---Hn--ekr~FeqqWls~TFs 169 (454)
T KOG4332|consen 96 ADKQGRKRACVTYCITYILSC-ITKHSPQYKVLMVGRVLGGIATSLLFSAFESWLIAE---HN--EKRGFEQQWLSVTFS 169 (454)
T ss_pred HhhhccccceeeehHHHHHHH-HhhcCCceEEEeehhhhhhHHHHHHHHHHHHHHHHH---hh--hccCChHhhhhHHHH
Confidence 599999996443333333332 23456889999999999999999988887776 455 22 22322111111
Q ss_pred ----HHHHHHHHHHHHHHhHH------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCC
Q psy13784 76 ----TARAFGLLQVYFMGSLL------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPS 145 (388)
Q Consensus 76 ----~~~~~G~~~~~~~~~~~------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (388)
.+..+-.+++++.+..+ |--.+|-..+....+...+.+. .|-..-++..+.++.+.+.+..
T Consensus 170 kA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAacfLaigmAvil~------~W~ENygdps~~kdlltqf~ga--- 240 (454)
T KOG4332|consen 170 KAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAACFLAIGMAVILS------SWSENYGDPSENKDLLTQFKGA--- 240 (454)
T ss_pred HHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHh------hhhhccCChhhhHHHHHHhhHh---
Confidence 22233334444444444 3345555444444443333332 1222222322222222221110
Q ss_pred CCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHH
Q psy13784 146 NQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVI 225 (388)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~ 225 (388)
...+..+. +..+.-.+...+....+..+..|.|.+-.+ -...--+.++..
T Consensus 241 ------------------------a~aiaSD~----ki~LLG~iqsLFE~smytFVFLWTPaLspn--~e~iPhGfiFat 290 (454)
T KOG4332|consen 241 ------------------------ARAIASDE----KIALLGAIQSLFEGSMYTFVFLWTPALSPN--DEEIPHGFIFAT 290 (454)
T ss_pred ------------------------HHHHhcch----HHHHHHHHHHHHhhhhheeeeeecccCCCC--cccCCchhHHHH
Confidence 01111111 112222233332322233333444443211 001234667777
Q ss_pred HHHHHHHHHHhhheeecccCCc--hHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccc
Q psy13784 226 GGLIIFASVISISFILPHTGVK--PLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFL 303 (388)
Q Consensus 226 ~~~~~~~~~~~~g~l~d~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (388)
+.+..++|+-+..++..|-..| ..+.+.+......+.+..+.....+. .......++..+.+-...+. ++
T Consensus 291 FMlASmLGSSla~Rl~s~s~~~ve~ymqivf~vs~a~l~Lpilt~~vsP~-------kes~~~s~i~F~~~E~cvGl-fw 362 (454)
T KOG4332|consen 291 FMLASMLGSSLASRLLSRSSPKVESYMQIVFLVSIAALLLPILTSSVSPS-------KESPSESLIGFCLFEACVGL-FW 362 (454)
T ss_pred HHHHHHHhhHHHHHHHhcCCcccchHHHHHHHHHHHHHHHHHHHhccCCC-------cCCchHHHHHHHHHHHHHhh-cc
Confidence 7788888888887776554333 34444444444444444333222211 12223334444555544444 45
Q ss_pred cchhhhhccCCchhhHHHHHHHHHHHHHHH
Q psy13784 304 PIPYLMLGEIFPMEVKGVAAGLATCLAYIF 333 (388)
Q Consensus 304 ~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g 333 (388)
|...-+-.+..|++.|++.+-+...--++.
T Consensus 363 PSimkmRsqyIPEearstimNfFRvPLnif 392 (454)
T KOG4332|consen 363 PSIMKMRSQYIPEEARSTIMNFFRVPLNIF 392 (454)
T ss_pred hHHHHHHHhhCCHHHHhhhhhheechhhHh
Confidence 777788899999999988766554443433
|
|
| >COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00013 Score=62.63 Aligned_cols=150 Identities=14% Similarity=0.044 Sum_probs=112.0
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccc
Q psy13784 199 NVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNF 278 (388)
Q Consensus 199 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (388)
..+.-..+.+-++.|.|...++.++.+..++..+.+++..++.+|+|.++.+..+.++..++..+=..
T Consensus 29 tsvgPLL~~Ir~~~gls~s~aGlLTtLPll~fg~~ap~a~~Lar~~g~er~l~~~Llli~~G~~iR~~------------ 96 (395)
T COG2807 29 TSVGPLLDEIRQDLGLSFSVAGLLTTLPLLAFGLFAPAAPRLARRFGEERSLFLALLLIAAGILIRSL------------ 96 (395)
T ss_pred hhhhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHhc------------
Confidence 33444555555678999999999999999999999999999999999999999888888888776543
Q ss_pred cccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc--cchhhHH
Q psy13784 279 EWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG--NGIFFFY 356 (388)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~ 356 (388)
...+..+....+.+.+...+ +......+.+.||++ -+..+|++.+...+++.+++.+...+.++.+ .......
T Consensus 97 ---~~~~~L~~gt~l~G~gIav~-nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~W 171 (395)
T COG2807 97 ---GGLPLLFLGTLLAGAGIAVI-NVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFW 171 (395)
T ss_pred ---ccHHHHHHHHHHHHhhHHHH-HHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHH
Confidence 12233333333333333332 344557888889876 7999999999999999999999999888874 5555566
Q ss_pred HHHHHHHHH
Q psy13784 357 GLVAAIGTA 365 (388)
Q Consensus 357 ~~~~~~~~~ 365 (388)
+..++++.+
T Consensus 172 Al~allAl~ 180 (395)
T COG2807 172 ALLALLALL 180 (395)
T ss_pred HHHHHHHHH
Confidence 666665554
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0023 Score=58.24 Aligned_cols=119 Identities=7% Similarity=-0.142 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHHhhheeecccCCc-hHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHH
Q psy13784 219 PYFITVIGGLIIFASVISISFILPHTGVK-PLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVA 297 (388)
Q Consensus 219 ~~~~~~~~~~~~~~~~~~~g~l~d~~g~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (388)
.-.....+.++..+|+.+..+..- -++| +.+.+..+.=.+..-++.+....++. . .+..-.+.+..++...+++..
T Consensus 309 ~~i~~~~fNvgD~vGR~~~~~~~~-p~~~~~~l~i~s~~R~iFIPlf~lcn~~~~~-~-~p~~~~~d~~~~~~~~l~glt 385 (437)
T TIGR00939 309 PIICFLLFNLFDWLGRSLTSKFMW-PDEDSRWLPILSFLRVLFIPLFLLCNYPQRS-R-LPVFFPGDAYFIILMLLFGFS 385 (437)
T ss_pred HHHHHHHHHHHHHHHhhhhheeEe-eCCCccchHHHHHHHHHHHHHHHHhcCCccc-c-CCeeecccHHHHHHHHHHHHh
Confidence 345677778999999997765421 1222 12222222222222222112111100 0 000112334444433333333
Q ss_pred HHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy13784 298 SSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTW 341 (388)
Q Consensus 298 ~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~ 341 (388)
. +-.......+.++..++++|..+-.+...+-.+|-.+|..+.
T Consensus 386 n-Gy~~s~~m~~~p~~v~~~e~e~aG~~~~~~l~~Gl~~Gs~l~ 428 (437)
T TIGR00939 386 N-GYLGSLSMCLAPRQVDPHEREVAGALMVIFLLVGLALGAVLS 428 (437)
T ss_pred h-hHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3 223355567788889999998888888888888888777653
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.0004 Score=66.28 Aligned_cols=109 Identities=19% Similarity=0.243 Sum_probs=87.4
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhcc--------hhHHHHHHHHHhhhccccccchhhhhcccccccCch---hhhHHH
Q psy13784 3 KLGRKPAIILIGIVGIIGWLLITYSLT--------ITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTK---LRGSLA 71 (388)
Q Consensus 3 r~Grr~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~---~r~~~~ 71 (388)
++||++.+.++.++..++.++.+++.. ....+++-.+..+|.|+.-+...+...| .++++ +|-...
T Consensus 50 ~lG~~~tIl~~~ii~~lG~~llai~a~~~~~~~~~~~~~l~gLaLia~G~GgiKp~vsaf~gd---qf~~~~~~~~~s~F 126 (654)
T TIGR00926 50 WLGKFKTILYLSIVYVVGHALLSFGAIPSSGHPLHDLLDLLGLALIALGTGGIKPCVSAFGGD---QFEERQLSLRSRFF 126 (654)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhccCcccccchHHHHHHHHHHHHHhhccccccCchhhhHh---hcCccchhHHHHHH
Confidence 579999999999999999988877521 1235677788889999999999999999 77654 467788
Q ss_pred HHHHHHHHHHHHHHHHHHhHH-----------hHHHHHHHhHHHHHHHHHHHHh
Q psy13784 72 TWATTARAFGLLQVYFMGSLL-----------RYRKVAAMAAIFSALGTILITF 114 (388)
Q Consensus 72 ~~~~~~~~~G~~~~~~~~~~~-----------~w~~~f~~~~~~~~~~~~~~~~ 114 (388)
.++..+.++|.++++.+..++ +|...|.+.++..++.+++...
T Consensus 127 ~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~ 180 (654)
T TIGR00926 127 SFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMA 180 (654)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHH
Confidence 888999999999998887766 3888999888888777665543
|
|
| >TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors) | Back alignment and domain information |
|---|
Probab=98.10 E-value=9.8e-05 Score=70.36 Aligned_cols=150 Identities=10% Similarity=0.023 Sum_probs=98.6
Q ss_pred HHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecc-cCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHH
Q psy13784 210 RSSGFHLLNPYFITVIGGLIIFASVISISFILPH-TGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPL 288 (388)
Q Consensus 210 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (388)
+.+|++...+...........-+..+++|++.|+ +|+++.+..+.++..++..++.+....... ........+
T Consensus 16 ~~lg~~~~~A~~i~~~f~~l~yl~pilGg~iAD~~lG~~~tIl~~~ii~~lG~~llai~a~~~~~------~~~~~~~~l 89 (654)
T TIGR00926 16 NFLGFSESTSTVLFHTFTYLCYLTPLIGAIIADGWLGKFKTILYLSIVYVVGHALLSFGAIPSSG------HPLHDLLDL 89 (654)
T ss_pred HHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhccCcccc------cchHHHHHH
Confidence 3468877777777777777778888889999996 699999999998888888777652111000 000111222
Q ss_pred HHHHHHHHHHHhccccchhhhhccCCchh---hHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc-------c-cchhhHHH
Q psy13784 289 AALVLNLVASSVGFLPIPYLMLGEIFPME---VKGVAAGLATCLAYIFGFFAVKTWPTLHLAL-------G-NGIFFFYG 357 (388)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~-------g-~~~~~~~~ 357 (388)
..+.+ ......+.-|...+...|.++++ .|...+.+.....++|+.+++.+.+++.+.. + ...+.+.+
T Consensus 90 ~gLaL-ia~G~GgiKp~vsaf~gdqf~~~~~~~~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~ 168 (654)
T TIGR00926 90 LGLAL-IALGTGGIKPCVSAFGGDQFEERQLSLRSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPA 168 (654)
T ss_pred HHHHH-HHhhccccccCchhhhHhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHH
Confidence 23333 33333344456667888877643 4778889999999999999999999987554 2 33455555
Q ss_pred HHHHHHHHH
Q psy13784 358 LVAAIGTAH 366 (388)
Q Consensus 358 ~~~~~~~~~ 366 (388)
+.++++.++
T Consensus 169 i~m~ia~lv 177 (654)
T TIGR00926 169 ILMILALIV 177 (654)
T ss_pred HHHHHHHHH
Confidence 555555443
|
|
| >PF12832 MFS_1_like: MFS_1 like family | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.4e-05 Score=52.88 Aligned_cols=63 Identities=14% Similarity=0.251 Sum_probs=54.7
Q ss_pred HHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhH
Q psy13784 193 QQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGM 255 (388)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 255 (388)
..+.+...+.-|.|.++++.|+|+.+.+....+..+..+++.++.|.++||.++++.......
T Consensus 11 ~~f~~~g~~~Pfl~~~~~~~Gl~~~~iGil~~i~~~~~~~~~pl~g~laDk~~~~~~~l~~~~ 73 (77)
T PF12832_consen 11 FYFAALGCLYPFLPLYLKQLGLSPSQIGILSAIRPLIRFLAPPLWGFLADKFGKRKVILLGSL 73 (77)
T ss_pred HHHHHHHHHHhhhhHhhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCccHHHHHHHH
Confidence 344556778889999999999999999999999999999999999999999999887655443
|
|
| >PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=97.98 E-value=7.2e-05 Score=61.97 Aligned_cols=115 Identities=14% Similarity=0.177 Sum_probs=83.0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh-------cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYS-------LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATW 73 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~ 73 (388)
.|++|.|.++.+|.+...+|..+...+ .++|.+.+..++.|.+.+.....+.....+ .+| ++||++.|+
T Consensus 60 ~d~~gp~~~l~iG~~~~~~GY~~~~l~~~~~i~~~~~~~~~~~~~l~~~s~~~~~ta~lvt~~~---NFP-~~RG~vvgi 135 (250)
T PF06813_consen 60 YDRFGPWVVLLIGAVLGFVGYGLLWLAVSGRIPSLPVWLMCLFLFLGGNSSCWFNTASLVTCVR---NFP-RSRGTVVGI 135 (250)
T ss_pred HHhcchHHHHHHHHHHHHHHHHHHHHHHhCccCccchHHHHHHHHHHcccHHHhhhHHHHHHHH---hCc-cccCceehh
Confidence 399999999999999999999877655 467788888888888877665665555556 676 589999999
Q ss_pred HHHHHHHHHHHHHHHHhHH---h-HHHHHHHhHHHHHHHHHHHHhccCCCc
Q psy13784 74 ATTARAFGLLQVYFMGSLL---R-YRKVAAMAAIFSALGTILITFIIPESP 120 (388)
Q Consensus 74 ~~~~~~~G~~~~~~~~~~~---~-w~~~f~~~~~~~~~~~~~~~~~~pesp 120 (388)
.-...+++..+-..+...+ + -+..+++...+.++.++...+ +++.|
T Consensus 136 lk~~~GLSaai~t~i~~~~f~~~~~~fll~la~~~~~v~l~~~~~-vr~~~ 185 (250)
T PF06813_consen 136 LKGFFGLSAAIFTQIYSAFFGDDPSSFLLFLAVLPAVVCLVAMFF-VRPVP 185 (250)
T ss_pred hhHHHHhHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhhh-eeccC
Confidence 9999999998887777666 3 344444444444444444444 55443
|
|
| >KOG3762|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=2.7e-05 Score=69.95 Aligned_cols=110 Identities=15% Similarity=0.151 Sum_probs=94.7
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHH-HHH
Q psy13784 2 DKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTA-RAF 80 (388)
Q Consensus 2 Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~-~~~ 80 (388)
+|+|+-+++.+++.+..+=.+..++.+|.|+.+-..+++|+..+..+....+|++. ..||+-|..+.++.+.. .++
T Consensus 431 ~kiGHv~v~~lgLa~~~~Rf~~~S~L~n~W~vLPieilqgit~aliWaa~~sY~s~---vaPp~l~at~Q~l~~g~f~Gl 507 (618)
T KOG3762|consen 431 EKIGHVNVMYLGLACNVGRFLYYSYLQNPWMVLPIEILQGITHALIWAAIISYASH---VAPPGLRATAQGLLQGIFHGL 507 (618)
T ss_pred HHhcccceeeehhhHHHHHHHHHHHhcCchheeeHHHHHHHHHHHHHHHHHHHHHh---hCCCcchHHHHHHHHHHhccc
Confidence 47899999999999999999999999999999999999999999999999999999 99999999999877544 577
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHh
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITF 114 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~ 114 (388)
|--+|.++++.. +=|..|.+.++.+++.+++...
T Consensus 508 G~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~~ 545 (618)
T KOG3762|consen 508 GKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFIS 545 (618)
T ss_pred CcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHHH
Confidence 777777777776 7788888888777766555443
|
|
| >KOG2563|consensus | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00034 Score=61.81 Aligned_cols=125 Identities=11% Similarity=0.007 Sum_probs=85.4
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccch--HHHHHHH
Q psy13784 215 HLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNL--IPLAALV 292 (388)
Q Consensus 215 s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 292 (388)
+...+-+...++.+..++..+.+-|+.||+|-|....++....+++..+=.+.....- ++..+ +....-.
T Consensus 77 s~~~~~wlsmIym~v~vp~gf~~mw~ldk~GLR~a~llgt~ln~iGa~Ir~iss~p~v--------~~~f~~~l~~~Gq~ 148 (480)
T KOG2563|consen 77 SSSAADWLSMIYMVVSVPFGFAAMWILDKFGLRTALLLGTVLNGIGAWIRLISSLPFV--------PPLFRRPLTHTGQS 148 (480)
T ss_pred chHHHHHHHHHHHHHHHHHhhHHHHhhcccchHHHHHHHHHHHHHHHHHhhhccCccc--------cccchhhhhHHhHH
Confidence 4666778888899999999999999999999999999999888888877654222111 11222 1111111
Q ss_pred HHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy13784 293 LNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL 348 (388)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 348 (388)
+....... ....+.-...--+|+++|+.+..+..+.+.+|.+++..+-+.+..+.
T Consensus 149 iaa~Aq~F-im~lPskiA~~WF~~~qra~A~~~~v~~n~LGvavg~llppilV~~~ 203 (480)
T KOG2563|consen 149 IAAAAQPF-ILGLPSKIAAVWFPPDQRAIATVLGVMGNPLGVAVGFLLPPILVPSS 203 (480)
T ss_pred HHHHhhhH-hhccccHHHHhhCCcchhhhhhhHHHhcchHHHHHHhhccceecCCC
Confidence 11111111 11222234455689999999999999999999999988888777655
|
|
| >PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS) | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00046 Score=56.53 Aligned_cols=50 Identities=16% Similarity=0.174 Sum_probs=35.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHH--Hh-----HH--hHHHHHHHhHHHHHHHHHHHHh
Q psy13784 65 KLRGSLATWATTARAFGLLQVYFM--GS-----LL--RYRKVAAMAAIFSALGTILITF 114 (388)
Q Consensus 65 ~~r~~~~~~~~~~~~~G~~~~~~~--~~-----~~--~w~~~f~~~~~~~~~~~~~~~~ 114 (388)
|+|+..+.+...+.++|.++.... -. .. +|++++.+.+++.++-+++..+
T Consensus 2 k~K~~~s~~n~~gf~iG~ii~~ipF~~~~~~~~~~~~~W~~I~si~~lL~~IpLIly~i 60 (267)
T PF07672_consen 2 KKKSILSQFNPWGFNIGTIIVNIPFLISSSVVIALTNNWQWILSIFILLIFIPLILYII 60 (267)
T ss_pred CccceeeeeccccchhhHHHHHhhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777777788888888776332 22 11 8999999999888777666655
|
|
| >PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00062 Score=59.77 Aligned_cols=137 Identities=9% Similarity=-0.046 Sum_probs=81.3
Q ss_pred HHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccC-----CchHHHH-hhHHHHHHHHHHHHHhhcccCcccccccccc
Q psy13784 210 RSSGFHLLNPYFITVIGGLIIFASVISISFILPHTG-----VKPLSAA-SGMGIALSMLVIGTYLLFEKAPIVNFEWGFF 283 (388)
Q Consensus 210 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (388)
.|++.+..-.+.......+ ..+.+...|+.+|+.+ ||...++ +......+..+.......-..... .....
T Consensus 8 vEL~vpA~lv~~lval~~~-~ap~R~~~G~~SD~~~s~~G~rRtPyI~~G~~~~~~g~~~ap~a~~~l~~~~~--~~~~~ 84 (403)
T PF03209_consen 8 VELGVPAWLVALLVALHYL-VAPLRVWFGHRSDTHPSILGWRRTPYIWGGTLLQAGGLAIAPFALLLLAESGQ--QSSGP 84 (403)
T ss_pred HHhccHHHHHHHHHHHHHH-HHHHHHHhccccccCcccCcCCchhhhHHHHHHHHHHHHHHHHHHHHHccccc--ccccc
Confidence 3556644444444444444 3456889999999988 7765544 444444444444332221111000 01112
Q ss_pred chHHHHHHHHHHHHHHhc---cccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 284 NLIPLAALVLNLVASSVG---FLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
.+.......+....++.+ ......+++.|..|+++|+++.++.....-+|.+++..+.|.+.+.+.
T Consensus 85 ~~~g~~~a~l~F~l~G~G~~~s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~lL~~~s 153 (403)
T PF03209_consen 85 FWLGLALAALAFLLYGLGVHASGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGRLLDPFS 153 (403)
T ss_pred cHHHHHHHHHHHHHHHhhHhHhHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHHHccccC
Confidence 232222222222222222 233445889999999999999999999999999999999999998876
|
It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase. |
| >COG2270 Permeases of the major facilitator superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=5e-05 Score=66.45 Aligned_cols=115 Identities=15% Similarity=0.201 Sum_probs=99.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
.||+|.|+++..++++..+.++...+...-..+.+.-.+.|...|+....+-+|..+ ..|++|-++.+|+++...-.
T Consensus 312 d~rfg~k~vl~~~lvi~~~~~~~~~~~~~~~~f~i~gll~g~s~G~~qA~SRSy~~~---lvp~~k~~~fFglyaltgra 388 (438)
T COG2270 312 DERFGSKPVLMIGLVILSIAALYLIFLEGELDFWILGLLVGTSLGGAQASSRSYLAR---LVPKGKEGRFFGLYALTGRA 388 (438)
T ss_pred HHHhCCceeehHHHHHHHHHHHHHHHccccHHHHHHHHHHHHhcchHHHHHHHHHHH---hCCCccccceeehhhhhhhH
Confidence 379999999999999999999988888887778888899999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH-----hHHHHHHHhHHHHHHHHHHHHhccCCC
Q psy13784 81 GLLQVYFMGSLL-----RYRKVAAMAAIFSALGTILITFIIPES 119 (388)
Q Consensus 81 G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~pes 119 (388)
+..+||.+-+.+ +-|.-+....++..+.+++.++ +|+.
T Consensus 389 ~S~~gp~lv~v~t~iTg~~r~g~~~i~vll~iGl~~L~~-v~~~ 431 (438)
T COG2270 389 ASFLGPFLVAVITQITGSSRAGVLSIIVLLLIGLLLLLR-VKVP 431 (438)
T ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHhhHhhEEe-ecCC
Confidence 999999998887 6777777766666666555555 6653
|
|
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0002 Score=54.71 Aligned_cols=86 Identities=16% Similarity=0.060 Sum_probs=74.6
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHHH
Q psy13784 2 DKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAFG 81 (388)
Q Consensus 2 Dr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G 81 (388)
+++|.|+.+++|.+.+.+-... -+-++.+.++..-.+.|++.+..++....++.+ ..++++|++..++.......+
T Consensus 62 ~~lg~K~sm~lg~~~y~~y~~~-~~~~~~~~l~~~s~l~G~~~a~lW~aqg~ylt~---~s~~~~~~~~~~ifw~i~~~s 137 (156)
T PF05978_consen 62 NKLGPKWSMILGSLGYAIYIAS-FFYPNSYTLYPASALLGFGAALLWTAQGTYLTS---YSTEETIGRNTGIFWAIFQSS 137 (156)
T ss_pred HHHhhHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHhhhhHHhhHhhhHHHHH---cCCHHHHhhHHHHHHHHHHHH
Confidence 4789999999999998865554 356788899999999999999999999999999 899999999999998888888
Q ss_pred HHHHHHHHhH
Q psy13784 82 LLQVYFMGSL 91 (388)
Q Consensus 82 ~~~~~~~~~~ 91 (388)
.++|.++...
T Consensus 138 ~i~G~~~~~~ 147 (156)
T PF05978_consen 138 LIFGNLFLFF 147 (156)
T ss_pred HHHHHHHHHH
Confidence 8888776544
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF05978 UNC-93: Ion channel regulatory protein UNC-93; InterPro: IPR010291 The proteins in this family are represented by UNC-93 from Caenorhabditis elegans | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0027 Score=48.54 Aligned_cols=113 Identities=13% Similarity=-0.066 Sum_probs=80.2
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHH
Q psy13784 216 LLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNL 295 (388)
Q Consensus 216 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (388)
+........+......+.+++.+.+.+++|.|+.+.++.+...+-...... .+.+..+....+.+
T Consensus 36 ~~~G~~slai~Y~~~~~s~l~~P~iv~~lg~K~sm~lg~~~y~~y~~~~~~---------------~~~~~l~~~s~l~G 100 (156)
T PF05978_consen 36 AGLGYYSLAILYGSFAISCLFAPSIVNKLGPKWSMILGSLGYAIYIASFFY---------------PNSYTLYPASALLG 100 (156)
T ss_pred ccccHHHHHHHHHHHHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHh
Confidence 444555666677778888889999999999999998888777755554422 12344444444555
Q ss_pred HHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy13784 296 VASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTL 344 (388)
Q Consensus 296 ~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l 344 (388)
.+.+..+ ...-.++.+...++.+++-.++...+...+.++|..+.-.+
T Consensus 101 ~~~a~lW-~aqg~ylt~~s~~~~~~~~~~ifw~i~~~s~i~G~~~~~~~ 148 (156)
T PF05978_consen 101 FGAALLW-TAQGTYLTSYSTEETIGRNTGIFWAIFQSSLIFGNLFLFFI 148 (156)
T ss_pred hhhHHhh-HhhhHHHHHcCCHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544 44447888888999999999999988888888887665443
|
UNC-93 colocalizes with SUP-10 and SUP-9 within muscle cells. Genetic studies suggest that these three proteins forms complex that coordinates muscle contraction. The function of UNC-93 is not known but is most likely an ion channel regulatory protein []. |
| >PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00088 Score=61.20 Aligned_cols=155 Identities=14% Similarity=0.056 Sum_probs=93.5
Q ss_pred HHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccC-----CchHHHHhhHHHHHHHHHHHHHhhcccCccccccc
Q psy13784 206 TDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTG-----VKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEW 280 (388)
Q Consensus 206 ~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (388)
+.+.+++|+++.+.........+-- ...++.|.++|-+. ||+.+.++.++..++.+.+..... .
T Consensus 14 ~~l~~~l~ls~~~~~~~~~~~~lPw-~~Kp~~g~lsD~~pi~G~rr~~Y~~i~~~~~~~~~~~~~~~~~--~-------- 82 (433)
T PF03092_consen 14 PFLKDDLGLSPAQLQRLSSLASLPW-SIKPLYGLLSDSFPIFGYRRKPYMIIGWLLGAVSALVLALLPA--S-------- 82 (433)
T ss_pred HHHHHHcCCCHHHHHHHHHHHhCch-HHhhhHHhhcccccccCCcchHHHHHHHHHHHHHHHHHHhccc--c--------
Confidence 3444567887777666555544433 34567889999863 555666666666555555544211 0
Q ss_pred cccchHHHHHHHHHHHHHHhccccchhhhhccCC---chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHH
Q psy13784 281 GFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIF---PMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFY 356 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~ 356 (388)
..+.........+...+.... ....-++..|.. |.+ +|...+.+.....+|+.++..+.|.+.+..+ ...+.+.
T Consensus 83 ~~s~~~~~~~l~la~~g~a~~-DV~aDa~vvE~~~~~p~~-~g~lqS~~~~~~~~G~lv~~~l~G~l~~~~~~~~~f~i~ 160 (433)
T PF03092_consen 83 ESSAAIAVVLLFLASFGYAFA-DVAADALVVELARREPES-RGDLQSFVWGVRSVGSLVGSLLSGPLLDSFGPQGVFLIS 160 (433)
T ss_pred cchhhhHHHHHHHHHHHHHHH-HHhhhHHHHHHhhcCCch-hHHHHHHHHHHHHHHHHHHHHhhhhhhhcCCCeEEehHH
Confidence 011122222222222222222 233345556654 444 7888899999999999999999999999988 7777777
Q ss_pred HHHHHHHHHHhheeccC
Q psy13784 357 GLVAAIGTAHVLAYLPE 373 (388)
Q Consensus 357 ~~~~~~~~~~~~~~~~~ 373 (388)
+.+..+..+......+|
T Consensus 161 ~~~~~l~~~~~~~~~~e 177 (433)
T PF03092_consen 161 AALPLLMLIVALFLLEE 177 (433)
T ss_pred HHHHHHHHHHHHHhhhh
Confidence 77777666555555555
|
Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus). |
| >TIGR01272 gluP glucose/galactose transporter | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0003 Score=61.27 Aligned_cols=96 Identities=6% Similarity=-0.036 Sum_probs=71.6
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|+||++.++..+..++.++....++...+ ..-++.|++.+..+|...+...+ ..|+ +.+.+.++. ....+
T Consensus 202 ~~r~g~~~~l~~~~~l~~~~~~l~~~~~~~~~~-~~~~l~g~~~s~i~P~~~s~a~~---~~~~-~~~~asai~-~~~~~ 275 (310)
T TIGR01272 202 MPMISQGRYLAFNAFLAVLLSIGAALTHGYVAM-WFVLALGLFNSIMFPTIFSLALN---ALGR-HTSQGSGIL-CLAIV 275 (310)
T ss_pred HHHhCHHHHHHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHHHHHHHHh---hhhh-hhhhhHHHH-HHHHh
Confidence 489999999988888888877766665554333 45668899999999999988888 5654 456667775 55678
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhH
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAA 102 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~ 102 (388)
|..+.|.+.+.+ |.+..|++..
T Consensus 276 Gg~i~P~l~G~lad~~g~~~a~~v~~ 301 (310)
T TIGR01272 276 GGAIVPLLQGSLADCLGIQLAFALPV 301 (310)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHH
Confidence 899999877776 6677776433
|
Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity. |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0009 Score=60.03 Aligned_cols=104 Identities=22% Similarity=0.222 Sum_probs=85.5
Q ss_pred hHHHHHHHHHHHHHHHHHhh---cch------hHHHHHHHHHhhhccccccchhhhhcccccccCch---hhhHHHHHHH
Q psy13784 8 PAIILIGIVGIIGWLLITYS---LTI------TNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTK---LRGSLATWAT 75 (388)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~---~~~------~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~---~r~~~~~~~~ 75 (388)
|+++++.++..+|.++..++ ++. +.++++-.+.++|.|+.-|...++.+| .++++ +|.+...++.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~~~~~~~~~~~~gL~lia~G~G~~K~ni~~~~~d---q~~~~~~~~~~~~F~~fY 78 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSLPSGIQLGLFYIGLALIAVGTGGIKPNISPFGAD---QYDEDDDSRRDSFFNWFY 78 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC------CHHHHHHHHHHHHHHCCHHHHHHHHHH---CSSTTTTTHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchhhhhHHHHHHHHHHHHHHhccccccccHHHHHHH---HhcccchhhhhhhHHHHH
Confidence 67888999999999985544 232 578999999999999999999999999 77765 5677888999
Q ss_pred HHHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHh
Q psy13784 76 TARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITF 114 (388)
Q Consensus 76 ~~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~ 114 (388)
.+.++|..++..+..++ +|.+.|.+.++..++..+..+.
T Consensus 79 ~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~~ 121 (372)
T PF00854_consen 79 WGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFLS 121 (372)
T ss_dssp HHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHHh
Confidence 99999999999988888 8999999998888777665544
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF03137 OATP: Organic Anion Transporter Polypeptide (OATP) family; InterPro: IPR004156 This family consists of several eukaryotic Organic-Anion-Transporting Polypeptides (OATPs) | Back alignment and domain information |
|---|
Probab=97.40 E-value=2e-05 Score=73.41 Aligned_cols=151 Identities=7% Similarity=-0.026 Sum_probs=1.2
Q ss_pred hhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCc
Q psy13784 195 FSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAP 274 (388)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (388)
.........-.+++-+++++++.+.+.+.+..-++..+..++..++.+|..|-+.+..+.++++++.+++.+--......
T Consensus 16 ~~~~g~~~~~lttiErRF~l~S~~~G~i~s~~di~~~~~~~~vsy~g~~~hrprwig~g~~~~~~g~~l~~lPhf~~~~y 95 (539)
T PF03137_consen 16 MMVSGYVNSSLTTIERRFGLSSSQSGLISSSYDIGSLVVVLFVSYFGGRGHRPRWIGIGALLMGLGSLLFALPHFLSGPY 95 (539)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeeecHHHHHHHHHHHhccHhhcCCC
Confidence 33333444455566667899999999999999999999999999999988888888889999999988886533221110
Q ss_pred c---cc-----------c------------------cccccc---hHHHHHHHHHHHHHHhccccchhhhhccCCchhhH
Q psy13784 275 I---VN-----------F------------------EWGFFN---LIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVK 319 (388)
Q Consensus 275 ~---~~-----------~------------------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r 319 (388)
. .+ . ...... +..++..-++.+......+++..+|+.|..+++..
T Consensus 96 ~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~gq~l~GiG~~pl~tLG~tYiDDnv~~~~s 175 (539)
T PF03137_consen 96 SYEEASNSNGNSSISSNLCDSSSSSQASSDCQDCCSSSSSSLSGYFYVFILGQLLIGIGATPLYTLGITYIDDNVSKKNS 175 (539)
T ss_dssp --------------------------------------------------------SSS---------------------
T ss_pred ccccccccccccccccccccccccccccCccccccccccccchHHHHHHHHHHHHHhccccCCccceeeeeccccccccC
Confidence 0 00 0 001111 12222233333444444567778899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy13784 320 GVAAGLATCLAYIFGFFAVKTWPTLH 345 (388)
Q Consensus 320 ~~~~~~~~~~~~~g~~~~~~~~g~l~ 345 (388)
+...|+......+|..+|-.+.+...
T Consensus 176 plYiGi~~~~~~lGPa~Gf~lg~~~L 201 (539)
T PF03137_consen 176 PLYIGILYAMSILGPALGFLLGSFCL 201 (539)
T ss_dssp --------------------------
T ss_pred ccchhhhhHHhhccHHHHHHHHHHHH
Confidence 99999999999888888877776654
|
Several have been identified mostly in human and rat. Different OATPs vary in tissue distribution and substrate specificity. Since the numbering of different OATPs in particular species was based originally on the order of discovery, similarly numbered OATPs in humans and rats did not necessarily correspond in function, tissue distribution and substrate specificity (in spite of the name, some OATPs also transport organic cations and neutral molecules) so a scheme of using digits for rat OATPs and letters for human ones was introduced []. Prostaglandin transporter (PGT) proteins are also considered to be OATP family members. In addition, the methotrexate transporter OATK is closely related to OATPs. This family also includes several predicted proteins from Caenorhabditis elegans and Drosophila melanogaster. This similarity was not previously noted. Note: Members of this family are described (in the UniProtKB/Swiss-Prot database) as belonging to the SLC21 family of transporters.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 3MRR_P. |
| >TIGR00769 AAA ADP/ATP carrier protein family | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.025 Score=51.90 Aligned_cols=130 Identities=8% Similarity=-0.179 Sum_probs=83.5
Q ss_pred CcHHHHHHHHHHHHHHH-HHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcc-ccc--------cccc----
Q psy13784 217 LNPYFITVIGGLIIFAS-VISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPI-VNF--------EWGF---- 282 (388)
Q Consensus 217 ~~~~~~~~~~~~~~~~~-~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--------~~~~---- 282 (388)
+...++.....+...+. .++-+++++|++|++.+...........+++.+......+.. ++. .+.+
T Consensus 43 e~i~fLk~~~~lp~~~~~~~ly~~l~~~~~~~~lf~~~~~~F~~~f~lF~~vl~p~~~~~~p~~~~~~~~~~~~~~~~~~ 122 (472)
T TIGR00769 43 EIIPFLKTWVVVPMAVIFMLIYTKLSNILSKEALFYTVISPFLGFFALFAFVIYPLSDLLHPTALADKLLSLLPPGFMGF 122 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhHHHHHHHHHHHHHHHHHHHhcchhhcCCcHHHHHHHhhcchhhHHH
Confidence 34555555444444444 778899999999999888777777666666665543322210 000 0000
Q ss_pred ----cchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q psy13784 283 ----FNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHL 346 (388)
Q Consensus 283 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~ 346 (388)
..|.........-.......+-+.|.+++|.+..++-.+-.++....+++|..+++.+..++.+
T Consensus 123 i~~~~~W~~~~FYv~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~ 190 (472)
T TIGR00769 123 IAILRIWSFALFYVMAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSK 190 (472)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1233333333333333333323778999999999999999999999999999999998888763
|
These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers. |
| >KOG4686|consensus | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.0013 Score=54.53 Aligned_cols=103 Identities=13% Similarity=0.143 Sum_probs=73.0
Q ss_pred CCCCCchhHHHHHHHHHHH-HHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGII-GWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARA 79 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~ 79 (388)
+||+|++-..+.+..+..+ +-....| +++.=.+...+.|+.....-......++. ..|+++.|++.+..+...+
T Consensus 324 ~Dk~G~n~~wv~~a~~~tl~~H~~l~F--t~lsPy~~m~~lGLsysllAcslWP~va~---~vpE~qLGTaygf~qsIqN 398 (459)
T KOG4686|consen 324 SDKYGFNLWWVASACILTLLGHSGLFF--TFLSPYTSMTFLGLSYSLLACSLWPCVAS---LVPEEQLGTAYGFIQSIQN 398 (459)
T ss_pred HhhhcceehhHHHHHHHHHHHhhhHHh--hhccHHHHHHHHhhhHHHHHHHHhhhhhh---hCCHHHhcchHHHHHHHHh
Confidence 5999999887766555544 3333333 33334556677888777665556667777 7888999999999999999
Q ss_pred HHHHHHHHHHhHH-------hHHHHHHHh-HHHHHHH
Q psy13784 80 FGLLQVYFMGSLL-------RYRKVAAMA-AIFSALG 108 (388)
Q Consensus 80 ~G~~~~~~~~~~~-------~w~~~f~~~-~~~~~~~ 108 (388)
+|..+.+++++.+ .|--.|.+. +.+++..
T Consensus 399 Lgla~i~Iiag~i~d~~g~y~~le~ffl~~~~~aL~s 435 (459)
T KOG4686|consen 399 LGLAFIPIIAGFIADGDGSYDNLEAFFLIIGLMALTS 435 (459)
T ss_pred hhhhHHhhhhheeecCCCchhhHHHHHHHHHHHHHHH
Confidence 9999999999998 455555444 3344333
|
|
| >KOG3626|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0032 Score=59.81 Aligned_cols=176 Identities=9% Similarity=-0.017 Sum_probs=118.7
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcc---
Q psy13784 199 NVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPI--- 275 (388)
Q Consensus 199 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 275 (388)
..+..-...+-+.+++++.+.+.+....-++..+...+..+...|..|-+.+-.+.++++++.++..+--.......
T Consensus 114 ~y~~s~IttiErRF~i~Ss~sG~I~s~~dig~~l~i~fVsYfG~r~HrPr~Ig~G~~~m~lgsll~alPHf~~~~y~~~~ 193 (735)
T KOG3626|consen 114 GYFNSVITTIERRFKISSSQSGLIASSYDIGNLLLIIFVSYFGSRGHRPRWIGIGLVLMGLGSLLFALPHFFSGPYEYEL 193 (735)
T ss_pred hhhhhhhhhhhhhcCCCCCcceeEeeecccchhhhhHhHHHhccccCccceeeechhHHHHHHHHHhChHHhcCcchhhh
Confidence 33344444444567898999999988999999999999999999999989999999999999988865421111100
Q ss_pred ---------c--------------------cccc--ccc---chHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHH
Q psy13784 276 ---------V--------------------NFEW--GFF---NLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGV 321 (388)
Q Consensus 276 ---------~--------------------~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~ 321 (388)
. .... ... .+..+...-++.+.......+...+++.|...+++.+.
T Consensus 194 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llff~~q~l~GIG~Tpi~tlGisYiDDnvk~~~Spl 273 (735)
T KOG3626|consen 194 EVIKQSVENPSSSLSFCCCNKSTNLCRPSPENSKREKESTSYPFLLFFLGQLLLGIGATPIFTLGISYIDDNVKKKNSPL 273 (735)
T ss_pred hhhhccccCCccccchhhccCCccccCCCCCcccccccCCchhHHHHHHHHHHhhcCCCCCccCCCccccccccccCCcH
Confidence 0 0000 011 23333333344444444556777789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHhh------------------cc--cchhhHHHHHHHHHHHHhheeccCCC
Q psy13784 322 AAGLATCLAYIFGFFAVKTWPTLHLA------------------LG--NGIFFFYGLVAAIGTAHVLAYLPETK 375 (388)
Q Consensus 322 ~~~~~~~~~~~g~~~~~~~~g~l~~~------------------~g--~~~~~~~~~~~~~~~~~~~~~~~~~~ 375 (388)
..|+..++..+|-++|-.+++..... .| |..|++.+.+.++.++.+ ++.|++.
T Consensus 274 Ylgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~~a~p~-f~fPk~l 346 (735)
T KOG3626|consen 274 YLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLFSAVPL-FFFPKEL 346 (735)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHHHHHHH-HhCcccC
Confidence 99999999999999888888776532 24 344566666666666644 4455443
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.23 Score=46.02 Aligned_cols=89 Identities=11% Similarity=0.023 Sum_probs=58.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh--c-------c----------------------hhHHHHHHHHHhhhcccccc
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYS--L-------T----------------------ITNLFIGRFLTGVSEGLSAS 49 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~--~-------~----------------------~~~~~~~r~l~G~g~g~~~~ 49 (388)
+|+++|++++-.....+.....+.++. | + .|...+..+..-+-......
T Consensus 83 ~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~~i~~~~~Wt~slfYv~aElwgsvvlS 162 (491)
T PF03219_consen 83 SNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKGFIAMFRNWTFSLFYVMAELWGSVVLS 162 (491)
T ss_pred HhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478889888776666666555555543 1 1 12223333333332222222
Q ss_pred -chhhhhcccccccCchhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy13784 50 -PATIYIAESIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLL 92 (388)
Q Consensus 50 -~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 92 (388)
.-..+..| .++.+|-.|..++...+.++|.++++.+...+
T Consensus 163 lLFW~fAN~---itt~~eAKRfYpl~g~ganigli~sG~~~~~~ 203 (491)
T PF03219_consen 163 LLFWGFANE---ITTVEEAKRFYPLFGLGANIGLIFSGQLTSYF 203 (491)
T ss_pred HHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23567788 89999999999999999999999998887776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.2 Score=44.56 Aligned_cols=88 Identities=9% Similarity=0.021 Sum_probs=49.0
Q ss_pred chhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHHHHHHHHHHHhHH-----hHHHHHHHhHH
Q psy13784 29 TITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLL-----RYRKVAAMAAI 103 (388)
Q Consensus 29 ~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-----~w~~~f~~~~~ 103 (388)
.+...++.-.+.|.+.|......+...++ +|++.-+..++=.+.++.+-.+..-+..... +=..-|.+..+
T Consensus 116 ff~vt~~~vv~~~~a~a~~qgs~~G~a~~----~P~~ytqavm~G~a~aG~l~Sl~~i~tka~~~~~~~sA~~yF~~s~~ 191 (406)
T KOG1479|consen 116 FFLVTLIIVVLLNLANAVVQGSLYGLAGL----FPSEYTQAVMSGQALAGTLTSLLRILTKAAFSDSRTSALIYFITSTV 191 (406)
T ss_pred hHHHHHHHHHHHhhhhhhhccchhhhhhc----CCHHHHHHHHhcchhHhHHHHHHHHHHHHhcCCCCceeehhHHHHHH
Confidence 45566777788899988888888888888 7877765444433333333222222222222 22333444444
Q ss_pred HHHHHHHHHHhccCCCch
Q psy13784 104 FSALGTILITFIIPESPA 121 (388)
Q Consensus 104 ~~~~~~~~~~~~~pesp~ 121 (388)
+.+++.+... .+|..|-
T Consensus 192 ~~llC~i~y~-~l~~lpf 208 (406)
T KOG1479|consen 192 ILLLCFVLYL-VLPKLPF 208 (406)
T ss_pred HHHHHHHHHH-HhhcchH
Confidence 4444444444 5777764
|
|
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.24 Score=46.92 Aligned_cols=107 Identities=17% Similarity=0.239 Sum_probs=80.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHhhcch-------------------------hHHHHHHHHHhhhccccccchhhhhccc
Q psy13784 4 LGRKPAIILIGIVGIIGWLLITYSLTI-------------------------TNLFIGRFLTGVSEGLSASPATIYIAES 58 (388)
Q Consensus 4 ~Grr~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~~~r~l~G~g~g~~~~~~~~~i~~~ 58 (388)
+||-+++.++.++..++..+..++... ..+....-+..+|.|+.-+...++-+|
T Consensus 101 ~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGad- 179 (571)
T KOG1237|consen 101 LGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCESPSKLQLAVLYGALYLIALGAGGIRPCLLAFGAD- 179 (571)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCcccCcchHHHHHHHHHHHHheeccCCCCCcchhhccc-
Confidence 488899999999888886655444111 145666677888999999999999999
Q ss_pred ccccC---ch-hh--hHHHHHHHHHHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHH
Q psy13784 59 IMVQN---TK-LR--GSLATWATTARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILIT 113 (388)
Q Consensus 59 ~~~~~---~~-~r--~~~~~~~~~~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~ 113 (388)
.++ ++ ++ ...+.++....++|..++..+-.+. +|.+-|.+..+...+..++.+
T Consensus 180 --Qfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~lgf~i~~~~~~lai~iF~ 242 (571)
T KOG1237|consen 180 --QFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKLGFGIPTVLNALAILIFL 242 (571)
T ss_pred --ccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhcccceeeccHHHHHHHHHHHHHH
Confidence 777 32 22 3567788888999999988777777 999999888887766655443
|
|
| >COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.042 Score=47.28 Aligned_cols=135 Identities=17% Similarity=0.056 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHcCCCC--CcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccc
Q psy13784 200 VILAYMTDFVRSSGFHL--LNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVN 277 (388)
Q Consensus 200 ~~~~~~~~~~~~~g~s~--~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (388)
......+.+..+.+.+. ...+.......+...++.++.|.+.||.|||+.+..+......+.+...+.
T Consensus 20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~---------- 89 (338)
T COG0477 20 LLSPALPLLLSTLSLSSGRLLYGLLLSAFFLGYAIGSLLAGPLGDRYGRRKVLIIGLLLFLLGTLLLALA---------- 89 (338)
T ss_pred hHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHHHhC----------
Confidence 33445555555555433 357788888888888888999999999999977766665434443333221
Q ss_pred ccccccchHHHHHHHHHHHHHHhccccchhhhhccCCch-hhHHHHHHHHHH-HHHHHHHHHHHHhHHHHhh
Q psy13784 278 FEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPM-EVKGVAAGLATC-LAYIFGFFAVKTWPTLHLA 347 (388)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~r~~~~~~~~~-~~~~g~~~~~~~~g~l~~~ 347 (388)
...............+.......+....+..|..|+ +.|+...+.... ...++..++|.+.+.+...
T Consensus 90 ---~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (338)
T COG0477 90 ---PNVGLALLLILRLLQGLGGGGLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGA 158 (338)
T ss_pred ---ccchHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011122222222222223223456677889999997 678888888888 5778888888777776655
|
|
| >PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0053 Score=41.16 Aligned_cols=68 Identities=13% Similarity=0.069 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHH
Q psy13784 199 NVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGT 266 (388)
Q Consensus 199 ~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~ 266 (388)
+.++...|.+.++.++|..+.+++.+...++.++|.+...++.++.++++.+..+.+...+..+.+.+
T Consensus 9 FayTplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~ma~ 76 (85)
T PF06779_consen 9 FAYTPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAMAL 76 (85)
T ss_pred HHHHhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 45667889989999999999999999999999999999999999888888888888888888888876
|
Note that many members are hypothetical proteins. |
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.007 Score=50.88 Aligned_cols=101 Identities=12% Similarity=0.148 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHHHHHHHHHHHh
Q psy13784 11 ILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAFGLLQVYFMGS 90 (388)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~ 90 (388)
.+..++.+.+..+.+++++.++-+.+-.+..++.|.....-.++-+. +++. ..+-++.+.+.+.++|..--.
T Consensus 96 ~~~v~~sa~s~~lVafs~s~~~sL~GV~~aSissGlGEiTFL~lss~----Y~~~----~i~~WSSGTGgAGliGa~SYa 167 (409)
T KOG3880|consen 96 ALVVLLSALSFFLVAFSNSVPMSLLGVVFASISSGLGEITFLALSSR----YPSI----VIAGWSSGTGGAGLIGASSYA 167 (409)
T ss_pred HHHHHHHhcceEEEEeccchhHHHhhhhhhhhcCCcceeehhhhhcc----CCCc----eeccccCCCCcchhhhhhHHH
Confidence 44556777888888999999999999999999988887766555555 3332 233344444444444443322
Q ss_pred HH------hHHHHHHHhHHHHHHHHHHHHhccCCC
Q psy13784 91 LL------RYRKVAAMAAIFSALGTILITFIIPES 119 (388)
Q Consensus 91 ~~------~w~~~f~~~~~~~~~~~~~~~~~~pes 119 (388)
.+ +-|...++...+.++.....++.++++
T Consensus 168 ~lT~~~~~spk~Tlli~l~lP~lfa~~yf~lL~~p 202 (409)
T KOG3880|consen 168 FLTSWANLSPKSTLLIMLFLPALFAFAYFFLLKSP 202 (409)
T ss_pred HHhhhcCCChhhHHHHHHHHHHHHHHHHHheeCCC
Confidence 22 567888888777777766666645544
|
|
| >KOG0637|consensus | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.0051 Score=54.72 Aligned_cols=160 Identities=17% Similarity=0.054 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecc----cCCchHHHHhh-H
Q psy13784 181 KPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPH----TGVKPLSAASG-M 255 (388)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~----~g~~~~~~~~~-~ 255 (388)
..++......+..++. +..-..|.|.++++.|.+....+......-+.+++.+++.|..+|| +|||+..+... .
T Consensus 32 ~~li~v~~ia~Gvqf~-wA~elsy~tPyl~~lGvphk~~S~iw~~gPi~G~~vQP~vG~~SDrc~sr~GRRRPfI~~~s~ 110 (498)
T KOG0637|consen 32 RKLISVASIAAGVQFG-WALELSYLTPYLQSLGVPHKWSSIIWLCGPLSGLLVQPLVGSASDRCTSRYGRRRPFILAGSL 110 (498)
T ss_pred HHHHHHHHHHHHHHHH-HHHHhccccHHHHHcCCCcccccccccccccccceecccccccccccccccccccchHHHhhH
Confidence 3344444445544444 4556678888888999988888888888888999999999999996 68877665444 4
Q ss_pred HHHHHHHHHHHHhhcccCccccccccccchH---HHHHHHHHHHHHHhccccchhhhhccCCchhhHHH-HHHHHHHHHH
Q psy13784 256 GIALSMLVIGTYLLFEKAPIVNFEWGFFNLI---PLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGV-AAGLATCLAY 331 (388)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~-~~~~~~~~~~ 331 (388)
...+++++++........-.++.......+. .++..-+.-........|. -++..|+..++++.+ +++....+..
T Consensus 111 ~i~~~l~Lig~aaDig~~lgd~~~~~~~~rai~~~~lg~~LLD~A~n~~qgp~-ra~L~Dl~~~d~~~~~Ans~f~~f~a 189 (498)
T KOG0637|consen 111 LIAVSLFLIGYAADIGLLLGDNERKPVKPRAIVLFILGFWLLDVANNTLQGPC-RALLADLARGDAKKTRANSVFSFFMA 189 (498)
T ss_pred HHHHHHhhhhhHhhhhHHhcCCcccccchHHHHHHHHHhHHHHhhhhhhhhhH-HHHHHHhccChhhhhccchhHHHHHH
Confidence 5556666554432222111111111111121 1222223333333444444 378888887777777 9999999999
Q ss_pred HHHHHHHHHhH
Q psy13784 332 IFGFFAVKTWP 342 (388)
Q Consensus 332 ~g~~~~~~~~g 342 (388)
+|+.+|-.+.+
T Consensus 190 vGnvLGY~~g~ 200 (498)
T KOG0637|consen 190 VGNVLGYALGS 200 (498)
T ss_pred hcceeeeeccc
Confidence 99988766554
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.079 Score=49.65 Aligned_cols=47 Identities=17% Similarity=0.191 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHh-hcc-cchhhHHHHHHHHHHH
Q psy13784 319 KGVAAGLATCLAYIFGFFAVKTWPTLHL-ALG-NGIFFFYGLVAAIGTA 365 (388)
Q Consensus 319 r~~~~~~~~~~~~~g~~~~~~~~g~l~~-~~g-~~~~~~~~~~~~~~~~ 365 (388)
-+...|-.+....+|+.+|+.+.+++.- ..| ....++.+.+.++.++
T Consensus 143 ~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~a~ 191 (521)
T PRK03612 143 LGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLAAL 191 (521)
T ss_pred hhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 4667788888999999999999888764 677 5556666665555444
|
|
| >PF01733 Nucleoside_tran: Nucleoside transporter; InterPro: IPR002259 Delayed-early response (DER) gene products include growth progression factors and several unknown products of novel cDNAs | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.00065 Score=59.06 Aligned_cols=118 Identities=8% Similarity=-0.150 Sum_probs=2.5
Q ss_pred HHHHHHHHHHHHHHHhhheeeccc-CCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHH
Q psy13784 221 FITVIGGLIIFASVISISFILPHT-GVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASS 299 (388)
Q Consensus 221 ~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (388)
.....+.++..+|+.+.++..-+. .+|++. ...+.-.+..-++.+....+.+ ...+..-.+.+..++...++. ..+
T Consensus 186 ~~fl~Fn~gD~iGR~l~~~~~~~~~~~~~l~-~~s~~R~~fiPlf~~cn~~p~~-~~~~~~~~~d~~~~i~~~l~g-~TN 262 (309)
T PF01733_consen 186 VLFLLFNLGDFIGRFLASWPRWPGPSPRWLW-ILSLLRFLFIPLFLLCNVQPRP-RYLPVLFNSDAWFIILMLLFG-FTN 262 (309)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHhcchhcceeEecccccccHH-HHHHHHHHHHHHHHHHHhhccc-ccCCCcccchHHHHHHHHHHH-Hcc
Confidence 345678899999999888643221 233333 2222222221111111111010 000001112233333333332 223
Q ss_pred hccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy13784 300 VGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTW 341 (388)
Q Consensus 300 ~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~ 341 (388)
+-..+....+.++..++++|..+-.+....-.+|-.+|..+.
T Consensus 263 Gyl~tl~m~~~p~~v~~~e~e~aG~~~~~~L~~Gl~~Gs~ls 304 (309)
T PF01733_consen 263 GYLSTLAMMYAPKSVSPEERELAGSVMSFFLSFGLFIGSVLS 304 (309)
T ss_dssp ----HHHH----------------------------------
T ss_pred chhhhceeeeCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333456667888888888888887777777777777766543
|
Murine and human cDNAs from one novel DER gene (DER12) have been characterised to identify its product and to examine its role in the growth response []. Both sequences encode a hydrophobic 36kDa protein that is predicted to contain 8 transmembrane (TM) domains. The protein has been localised to the nucleolus, where its concentration increases following mitogen stimulation []. Although the function of the protein is unknown, its identification as a nucleolar gene transcriptionally activated by growth factors implicates it as participating in the proliferative response []. Sequence analysis reveals the protein to share a high degree of similarity with the C-terminal portion of equilibrative nucleoside transporters. These proteins are integral membrane proteins which enable the movement of hydrophilic nucleosides and nucleoside analogs down their concentration gradients across cell membranes. ENT family members have been identified in humans, mice, fish, tunicates, slime molds, and bacteria []. ; GO: 0005337 nucleoside transmembrane transporter activity, 0006810 transport, 0016020 membrane; PDB: 1HXI_A. |
| >PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX) | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.13 Score=45.98 Aligned_cols=131 Identities=10% Similarity=-0.017 Sum_probs=81.1
Q ss_pred HHHHHHHHH--cCCCCCcHHHHHHHHH-HHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcccccc
Q psy13784 203 AYMTDFVRS--SGFHLLNPYFITVIGG-LIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFE 279 (388)
Q Consensus 203 ~~~~~~~~~--~g~s~~~~~~~~~~~~-~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 279 (388)
.|...++.+ .|++..+...-..+.. =..+..-+....+.|.++.|++++...+...+...++.+.
T Consensus 24 Pfl~~yL~~~~kn~T~~qv~~~i~Pv~tYSyl~~l~~vflltd~l~Ykpviil~~~~~i~t~~lll~~------------ 91 (412)
T PF01770_consen 24 PFLTPYLTGPDKNFTEEQVNNEIYPVWTYSYLAFLLPVFLLTDYLRYKPVIILQALSYIITWLLLLFG------------ 91 (412)
T ss_pred ccchHHHcCCccCCCHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH------------
Confidence 344445542 5887665543333322 2334444566778999999999988888777777766541
Q ss_pred ccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc
Q psy13784 280 WGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG 349 (388)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g 349 (388)
...+..-+.=++.+... . .-...++++-...|+++--++.+......-+|.+++..++-.+....+
T Consensus 92 --~sv~~mq~~q~~yg~~~-a-~evay~sYiys~v~~~~yq~vts~~raa~l~g~~~s~~lgQllvs~~~ 157 (412)
T PF01770_consen 92 --TSVLAMQLMQFFYGLAT-A-AEVAYYSYIYSVVDKEHYQKVTSYTRAATLVGRFISSLLGQLLVSFGG 157 (412)
T ss_pred --CcHHHHHHHHHHHHHHH-H-HHHHHHHHheeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 12222222222222222 2 223445777777788888889999999998999988888877766444
|
Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane |
| >PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.049 Score=48.91 Aligned_cols=115 Identities=10% Similarity=-0.038 Sum_probs=73.4
Q ss_pred hHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchh---hHHHHHH
Q psy13784 248 PLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPME---VKGVAAG 324 (388)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~r~~~~~ 324 (388)
|++..+.++..++.+++.+....... ..........+.+.+.. ....+.=|....+..|.++++ .|.+.+.
T Consensus 2 ktI~~g~~~~~~G~~ll~l~~~~~~~-----~~~~~~~~~~~gL~lia-~G~G~~K~ni~~~~~dq~~~~~~~~~~~~F~ 75 (372)
T PF00854_consen 2 KTILLGSIVYLLGHVLLTLSAIPPSL-----PSGIQLGLFYIGLALIA-VGTGGIKPNISPFGADQYDEDDDSRRDSFFN 75 (372)
T ss_dssp HHHHHHHHHHHHHHHH--HHHTSSSC-----------CHHHHHHHHHH-HHHHCCHHHHHHHHHHCSSTTTTTHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHhHHHHhcchh-----hhhHHHHHHHHHHHHHH-hccccccccHHHHHHHHhcccchhhhhhhHH
Confidence 46677888888888886554332221 00112233444444433 334445566668888888765 5778888
Q ss_pred HHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhh
Q psy13784 325 LATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVL 368 (388)
Q Consensus 325 ~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~ 368 (388)
......++|+.+++.+.+++.++.| ...|.+.++..+++.+..+
T Consensus 76 ~fY~~in~G~~~~~~~~~~i~~~~~~~~~f~i~~~~~~~~~~~f~ 120 (372)
T PF00854_consen 76 WFYWGINIGSLFSPTLVPYIQQNYGWFLGFGIPAIGMLLALIVFL 120 (372)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHCS-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHhhcccchhhccccchhhhhhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 6666666666666555443
|
The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C. |
| >PF02487 CLN3: CLN3 protein; InterPro: IPR003492 Batten's disease, the juvenile variant of neuronal ceroid lipofuscionosis (NCL), is a recessively inherited disorder affecting children of 5-10 years of age | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.031 Score=49.80 Aligned_cols=67 Identities=19% Similarity=0.175 Sum_probs=60.9
Q ss_pred HHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy13784 23 LITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLL 92 (388)
Q Consensus 23 ~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 92 (388)
..-+.++.|..++.-+..|+..|..++.....+.| ..++++|-.+++....+-++|..++.+++-.+
T Consensus 328 ~~~fipsi~ivf~lif~eGLlGGa~YVNtF~~I~~---~~~~~~REFslg~vsvsds~GI~lAgll~l~l 394 (402)
T PF02487_consen 328 WYRFIPSIWIVFVLIFYEGLLGGASYVNTFYRISE---EVPPEDREFSLGAVSVSDSLGILLAGLLGLPL 394 (402)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHh---cCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 34456899999999999999999999999999999 89999999999999999999999999998766
|
The disease is characterised by progressive loss of vision, seizures and psychomotor disturbances. Biochemically, the disease is characterised by lysosomal accumulation of hydrophobic material, mainly ATP synthase subunit C, largely in the brain but also in other tissues. The disease is fatal within a decade []. Mutations in the CLN3 gene are believed to cause Batten's disease []. The CLN3 gene, with a predicted 438-residue product, maps to chromosome p16p12.1. The gene contains at least 15 exons spanning 15kb and is highly conserved in mammals []. A 1.02kb deletion in the CLN3 gene, occurring in either one or both alleles, is found in 85% of Batten disease chromosomes causing a frameshift generating a predicted translated product of 181 amino acid residues [, ]. 22 other mutations, including deletions, insertions and point mutations, have been reported. It has been suggested that such mutations result in severely truncated CLN3 proteins, or affect its structure/conformation [, ]. CLN3 proteins, which are believed to associate in complexes, are heavily glycosylated lysosomal membrane proteins [], containing complex Asn-linked oligosaccharides []. Extensive glycosylation is important for the stability of these lysosomal proteins in the highly hydrolytic lysosomal lumen. Lysosomal sequestration of active lysosomal enzymes, transport of degraded molecules from the lysosomes, and fusion and fission between lysosomes and other organelles. The CLN3 protein is a 43kDa, highly hydrophobic, multi-transmembrane (TM), phosphorylated protein []. Hydrophobicity analysis predicts 6-9 TM segments, suggesting that CLN3 is a TM protein that may function as a chaperone or signal transducer. The majority of putative phosphorylation sites are found in the N-terminal domain, encompassing 150 residues []. Phosphorylation is believed to be important for membrane compartment interaction, in the formation of functional complexes, and in regulation and interactions with other proteins []. CLN3 contains several motifs that may undergo lipid post-translational modifications (PTMs). PTMs contribute to targeting and anchoring of modified proteins to distinct biological membranes []. There are three general classes of lipid modification: N-terminal myristoylation, C-terminal prenylation, and palmitoylation of cysteine residues. Such modifications are believed to be a common form of PTM occurring in 0.5% of all cellular proteins, including brain tissue []. The C terminus of the CLN3 contains various lipid modification sites: C435, target for prenylation; G419, target for myristoylation; and C414, target for palmitoylation []. Prenylation results in protein hydrophobicity, influences interaction with upstream regulatory proteins and downstream effectors, facilitates protein-protein interaction (multisubunit assembly) and promotes anchoring to membrane lipids. The prenylation motif, Cys-A-A-X, is highly conserved within CLN3 protein sequences of different species []. Species with known CLN3 protein homologues include: Homo sapiens, Canis familiaris, Mus musculus, Saccharomyces cerevisiae and Drosophila melanogaster.; GO: 0016020 membrane |
| >PF06963 FPN1: Ferroportin1 (FPN1); InterPro: IPR009716 This entry represents the solute carrier family 40 member 1 family of proteins, also known as Ferroportin 1 | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.76 Score=41.86 Aligned_cols=164 Identities=10% Similarity=-0.095 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHH----HHHHHHHHHHhhccc
Q psy13784 198 VNVILAYMTDFVRSSG-FHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGI----ALSMLVIGTYLLFEK 272 (388)
Q Consensus 198 ~~~~~~~~~~~~~~~g-~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 272 (388)
--...+-.+.++.+.. -+-.-.+.....-.+..++.+...|...||..|.+....+.... ++++..+........
T Consensus 18 dR~w~Fa~~L~L~~i~p~sLl~~siygl~~~~~~~~f~~~vG~~iD~~~Rl~~~~~~l~~Qn~sv~~s~~~~~~l~~~~~ 97 (432)
T PF06963_consen 18 DRMWEFAVPLFLISIFPGSLLPVSIYGLVRSLSAILFGPWVGRWIDRSPRLKVIRTSLVVQNLSVAASCALFLLLLSYPS 97 (432)
T ss_pred HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhHHHHHHHhCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 4455556666666542 12233455555666777788888899999999988776665433 222332222222211
Q ss_pred CccccccccccchHHHHHHHHHHHHHHhccccchhhhhc------cCC--chhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Q psy13784 273 APIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLG------EIF--PMEVKGVAAGLATCLAYIFGFFAVKTWPTL 344 (388)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~--p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l 344 (388)
... ......+..+....+.......+ ........ .+. +++.....++...-+-.+...++|.+.|.+
T Consensus 98 ~~~---~~~~~~~~l~~~~~~~~~i~~La--s~~~~iavERDWVvvi~~~~~~~La~~NA~mRRIDL~ckllaPl~vG~l 172 (432)
T PF06963_consen 98 SSS---QSSWLFIALFALLILLGAIERLA--SIANTIAVERDWVVVIAGGDPGALARMNATMRRIDLFCKLLAPLFVGLL 172 (432)
T ss_pred ccc---ccchHHHHHHHHHHHHHHHHHHH--HhhhhheeccchhhhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 100 00011111111111122111111 11112222 222 445566777777777778999999999999
Q ss_pred Hhhcc-cchhhHHHHHHHHHHHH
Q psy13784 345 HLALG-NGIFFFYGLVAAIGTAH 366 (388)
Q Consensus 345 ~~~~g-~~~~~~~~~~~~~~~~~ 366 (388)
.+..+ .....+.++..+++..+
T Consensus 173 ~t~~s~~~~~~~i~~~N~~S~~v 195 (432)
T PF06963_consen 173 MTFASPVIAAIFIAGWNLASVFV 195 (432)
T ss_pred hhccCHHHHHHHHHHHHHHHHHH
Confidence 88888 66666667766666554
|
It is thought to be involved in iron export from duodenal epithelial cells and also in transfer of iron between maternal and fetal circulation. This family of proteins is known to be localised in the basolateral membrane of polarized epithelial cells [].; GO: 0005381 iron ion transmembrane transporter activity, 0034755 iron ion transmembrane transport, 0016021 integral to membrane |
| >KOG3098|consensus | Back alignment and domain information |
|---|
Probab=95.23 E-value=0.4 Score=43.74 Aligned_cols=112 Identities=10% Similarity=-0.159 Sum_probs=86.1
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHH
Q psy13784 214 FHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVL 293 (388)
Q Consensus 214 ~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (388)
.++........+......+..++++.+.|+++.|+.+.++......-.+.+.. .+.+.......+
T Consensus 47 i~~~aGy~~~aiiY~~ftv~~l~~psiv~~i~~K~~lv~ga~~y~~f~~gfl~---------------~N~y~~yfssal 111 (461)
T KOG3098|consen 47 ISAYAGYYGQAIIYAFFTVSCLFAPSIVNFLGPKWALVIGATCYAAFPLGFLF---------------PNSYYLYFSSAL 111 (461)
T ss_pred cCCCccHHHHHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHhHHHHHHHHHHHh---------------cchHHHHHHHHH
Confidence 44444455578888889999999999999999999999888877776666644 245666666666
Q ss_pred HHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q psy13784 294 NLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTW 341 (388)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~ 341 (388)
.+.+.+.-+ ...-.+..|..+++.+.+..++.-.+...+.++|..+.
T Consensus 112 lG~Gaallw-~GqG~ylt~~st~~tie~Nisi~Wai~~~~li~Ggi~l 158 (461)
T KOG3098|consen 112 LGFGAALLW-TGQGGYLTSNSTRETIERNISIFWAIGQSSLIIGGIIL 158 (461)
T ss_pred hhhhHHhee-cccceehhhcCChhhHHHHHHHHHHHHHHHHHhhhHhh
Confidence 666666545 44448999999999999999999999888888886554
|
|
| >KOG4332|consensus | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.059 Score=44.72 Aligned_cols=156 Identities=17% Similarity=0.047 Sum_probs=80.2
Q ss_pred HHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchH
Q psy13784 207 DFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLI 286 (388)
Q Consensus 207 ~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (388)
++++.+|+...+.+.+........++...+.|-+.||.|||+....-++...++++.- +.++ ..+
T Consensus 62 yLYstYgFgkG~IgqLfiaGfgSsmLFGtivgSLaDkqGRKracvtycitYiLsCiTK----hSpq-----------YkV 126 (454)
T KOG4332|consen 62 YLYSTYGFGKGDIGQLFIAGFGSSMLFGTIVGSLADKQGRKRACVTYCITYILSCITK----HSPQ-----------YKV 126 (454)
T ss_pred eeehhcCccCCccceeeecccchHHHHHHHHHHHHhhhccccceeeehHHHHHHHHhh----cCCc-----------eEE
Confidence 3445668878888877776666677777788889999999997655554444444332 1111 111
Q ss_pred HHHHHHHHHHHHHhccccchhhhhccC-----CchhhHHHHHHHHH-HHHHHHHHHHHHHhHHHHhhcc---cchhhHHH
Q psy13784 287 PLAALVLNLVASSVGFLPIPYLMLGEI-----FPMEVKGVAAGLAT-CLAYIFGFFAVKTWPTLHLALG---NGIFFFYG 357 (388)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~p~~~r~~~~~~~~-~~~~~g~~~~~~~~g~l~~~~g---~~~~~~~~ 357 (388)
..+.=.+.+.....-+...-.-++.|. +|++-.....+=.. ..+.+-.+++......+.|..+ ..+|-..+
T Consensus 127 LmVGR~LGGiaTsLLFSaFEsWliaEHnekr~FeqqWls~TFskA~ffgNglvAiiaGlfgn~lvd~~slGPVAPFdAAa 206 (454)
T KOG4332|consen 127 LMVGRVLGGIATSLLFSAFESWLIAEHNEKRGFEQQWLSVTFSKAVFFGNGLVAIIAGLFGNLLVDTFSLGPVAPFDAAA 206 (454)
T ss_pred EeehhhhhhHHHHHHHHHHHHHHHHHhhhccCChHhhhhHHHHHHHHhhccHHHHHHHHHHHHHHHHhccCCCCchHHHH
Confidence 111111111111111111111234443 34444343333333 2334556666666677778776 45555555
Q ss_pred HHHHHHHHHhheeccCCCCC
Q psy13784 358 LVAAIGTAHVLAYLPETKGK 377 (388)
Q Consensus 358 ~~~~~~~~~~~~~~~~~~~~ 377 (388)
.+..++..+...-..|..++
T Consensus 207 cfLaigmAvil~~W~ENygd 226 (454)
T KOG4332|consen 207 CFLAIGMAVILSSWSENYGD 226 (454)
T ss_pred HHHHHHHHHHHhhhhhccCC
Confidence 55555554444433444333
|
|
| >PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions | Back alignment and domain information |
|---|
Probab=95.08 E-value=2.6 Score=39.18 Aligned_cols=131 Identities=15% Similarity=-0.085 Sum_probs=80.0
Q ss_pred CCcHHHHHHHHHH-HHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCc-cccc--------ccc----
Q psy13784 216 LLNPYFITVIGGL-IIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAP-IVNF--------EWG---- 281 (388)
Q Consensus 216 ~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~---- 281 (388)
++....+-....+ +.++...+-.+++|++++.++.-...........++++......+. +.+. .+.
T Consensus 57 ae~I~flK~~~vlP~a~~f~~~y~kl~n~~s~~~lFy~~~~~F~~fF~~f~~vlyP~~~~lhp~~~~~~~~~~~~~~~~~ 136 (491)
T PF03219_consen 57 AEVIPFLKVWGVLPVAILFTILYSKLSNRLSREKLFYIIIIPFLGFFALFAFVLYPNRDILHPDAFADKLLAILPPGFKG 136 (491)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhhchhhcCCCHHHHHhhhhccchHHH
Confidence 3444444332222 3445566678899999999988776666666666665544322210 0000 000
Q ss_pred ----ccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q psy13784 282 ----FFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHL 346 (388)
Q Consensus 282 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~ 346 (388)
..+|...+..+..-........-..|.+++|.++.++..+-+++.....++|..+++.+...+.+
T Consensus 137 ~i~~~~~Wt~slfYv~aElwgsvvlSlLFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~ 205 (491)
T PF03219_consen 137 FIAMFRNWTFSLFYVMAELWGSVVLSLLFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSS 205 (491)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01222222222223333333333568999999999999999999999999999999998888776
|
One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane |
| >KOG1237|consensus | Back alignment and domain information |
|---|
Probab=93.74 E-value=2.9 Score=39.78 Aligned_cols=156 Identities=12% Similarity=-0.071 Sum_probs=92.6
Q ss_pred HHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecc-cCCchHHHHhhHHHHHHHHHHHHHhhcccCcc-------c-cccc
Q psy13784 210 RSSGFHLLNPYFITVIGGLIIFASVISISFILPH-TGVKPLSAASGMGIALSMLVIGTYLLFEKAPI-------V-NFEW 280 (388)
Q Consensus 210 ~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~-~~~~ 280 (388)
..++.+...+...............+.+++++|. +||-+++.++..+..++..++.+......... . +...
T Consensus 66 ~~~~~~~~~aa~~v~~f~G~~~~~~l~g~~laD~f~gry~tI~~~s~i~~~G~~~lt~~a~~~~l~p~~~~~~~~~~~c~ 145 (571)
T KOG1237|consen 66 LELHASGGGAANNVNAFGGTQFLLPLLGAFLADSFLGRYFTINIGSLISLLGLFGLTLSAMIPALLPFMCKFKPGGNVCE 145 (571)
T ss_pred HHhccchHHHHHHHHHHhhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccccCCCCCCccc
Confidence 4556666666666667777777888899999996 58888888888888888766655443332100 0 0001
Q ss_pred cccchH--HHHHHHHHHHHHHhccccchhhhhccCCc----hhhHH--HHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cc
Q psy13784 281 GFFNLI--PLAALVLNLVASSVGFLPIPYLMLGEIFP----MEVKG--VAAGLATCLAYIFGFFAVKTWPTLHLALG-NG 351 (388)
Q Consensus 281 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----~~~r~--~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~ 351 (388)
...... .+............+.-|...++-+|-++ .+.+. .-+.......+.|..++-.+.-++.++.+ ..
T Consensus 146 ~~s~~q~~~~~~~l~lia~G~gg~r~~~~~fGadQfd~~~~~~~~~~~~fFnW~yf~~~~g~l~a~t~~vyiq~~~~w~l 225 (571)
T KOG1237|consen 146 SPSKLQLAVLYGALYLIALGAGGIRPCLLAFGADQFDELDPVEVKGIPSFFNWFYFSQNGGALLAQTVLVYIQDNVGWKL 225 (571)
T ss_pred CcchHHHHHHHHHHHHheeccCCCCCcchhhcccccCccCcchhhCcccchhHHHHHHHHHHHHHHHHHHhhhhccccee
Confidence 111111 11111112222333444555577777777 22223 56677777888888888888888777777 55
Q ss_pred hhhHHHHHHHHHHH
Q psy13784 352 IFFFYGLVAAIGTA 365 (388)
Q Consensus 352 ~~~~~~~~~~~~~~ 365 (388)
.+.+..+...++.+
T Consensus 226 gf~i~~~~~~lai~ 239 (571)
T KOG1237|consen 226 GFGIPTVLNALAIL 239 (571)
T ss_pred eccHHHHHHHHHHH
Confidence 55555555555444
|
|
| >KOG3574|consensus | Back alignment and domain information |
|---|
Probab=91.95 E-value=2.7 Score=37.29 Aligned_cols=66 Identities=11% Similarity=0.133 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeec-----ccCCchHHHHh
Q psy13784 184 IIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILP-----HTGVKPLSAAS 253 (388)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d-----~~g~~~~~~~~ 253 (388)
....+++.. +..-+.... -.|.+++.-|.|-++.+.......= .---++...++| |+||||..++-
T Consensus 34 llLl~LYll-QGiP~GL~~-~iP~lL~ak~vSyt~~a~fS~ay~P--~sLKllWaPiVDs~y~k~~GrrksWvvp 104 (510)
T KOG3574|consen 34 LLLLFLYLL-QGIPLGLIG-AIPLLLQAKGVSYTSQAIFSFAYWP--FSLKLLWAPIVDSVYSKRFGRRKSWVVP 104 (510)
T ss_pred HHHHHHHHH-cCCchhHhh-hhHHHhcCCCcchhhhhhhhhhhhH--HHHHHHHHhhhHHHHHHhhccccceeee
Confidence 333333333 444433333 7888888656654443333222211 112345666777 99999866543
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.06 E-value=13 Score=34.39 Aligned_cols=131 Identities=11% Similarity=-0.175 Sum_probs=85.9
Q ss_pred CCcHHHHHHHHHH-HHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCc-cccc---------cc----
Q psy13784 216 LLNPYFITVIGGL-IIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAP-IVNF---------EW---- 280 (388)
Q Consensus 216 ~~~~~~~~~~~~~-~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---------~~---- 280 (388)
++....+-...-+ +.++..++-.++.++..+.++............+++++..+...+. ++++ .+
T Consensus 60 ae~I~FlK~~~vlP~avif~~iy~kl~~~lt~~~vF~~~~~~F~~fF~LFa~Vi~P~~~~~hp~~~~~~~~~~~~p~~l~ 139 (509)
T COG3202 60 AESISFLKTWGVLPSAVIFTIIYQKLLNILTREKVFYIILGFFLGFFALFAFVIYPYKDILHPDPEFSRDLFADLPMFLK 139 (509)
T ss_pred chhhHHHHHHHhchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCHHHHHHHHhhCCccce
Confidence 4555555554444 5667777788889999999988777777777777776655533221 1110 01
Q ss_pred ----cccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHh
Q psy13784 281 ----GFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHL 346 (388)
Q Consensus 281 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~ 346 (388)
-.+.|.........-........-+.|..++|....++..+-+++.+...+++..++..+..++.+
T Consensus 140 ~~ili~~~Ws~s~~Yi~aELWgslV~S~lFw~faNeitt~~eakRFy~lf~l~~ni~lllsg~~~~~~~k 209 (509)
T COG3202 140 WFILIVGEWSYSLFYIMAELWGSLVLSLLFWQFANEITTIEEAKRFYPLFGLGANISLLLSGEVTSWLSK 209 (509)
T ss_pred eeeEeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 001243333333333333333334667899999999999999999999999999999888888765
|
|
| >COG3202 ATP/ADP translocase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.00 E-value=13 Score=34.35 Aligned_cols=38 Identities=13% Similarity=0.009 Sum_probs=32.7
Q ss_pred hhhhcccccccCchhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy13784 52 TIYIAESIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLL 92 (388)
Q Consensus 52 ~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 92 (388)
.....| .+..+|-.|..+.++.+.+++..+++.+..++
T Consensus 170 w~faNe---itt~~eakRFy~lf~l~~ni~lllsg~~~~~~ 207 (509)
T COG3202 170 WQFANE---ITTIEEAKRFYPLFGLGANISLLLSGEVTSWL 207 (509)
T ss_pred HHHHHH---hhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567 78888999999999999999999999988887
|
|
| >KOG3880|consensus | Back alignment and domain information |
|---|
Probab=90.42 E-value=1.1 Score=38.37 Aligned_cols=76 Identities=12% Similarity=0.092 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHHHHHHHHHHHhHH
Q psy13784 14 GIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLL 92 (388)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~ 92 (388)
..++.+...+..+.++++...+.-+..|+-.|..++...--+.+ ..++++|-.+++....+-++|..++.+++-.+
T Consensus 326 Nl~ff~~~a~~~ftpsi~ivf~lI~~EGLlGGasYVNTf~~i~~---e~~pd~rEfamsavs~sDS~Gi~lA~~lalpl 401 (409)
T KOG3880|consen 326 NLLFFLLQAWYWFTPSIWIVFALILFEGLLGGASYVNTFHNIHK---ETEPDVREFAMSAVSISDSIGIFLAGLLALPL 401 (409)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhcCchHHHHHHHHHhh---cCCchHHHHhHhhheecchhhHHHHHHHhccc
Confidence 34445555566778999999999999999888888888777877 79999999999999999999999999887655
|
|
| >KOG1479|consensus | Back alignment and domain information |
|---|
Probab=87.33 E-value=22 Score=32.10 Aligned_cols=40 Identities=13% Similarity=0.057 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHHHHhh
Q psy13784 196 SAVNVILAYMTDFVRSS-GFHLLNPYFITVIGGLIIFASVISI 237 (388)
Q Consensus 196 ~~~~~~~~~~~~~~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~ 237 (388)
..++.+.+-.+++.+.. +.++ +........+...+..++.
T Consensus 32 lpWN~fiTa~~y~~~~~~~~~~--~~~F~~~~~~~a~i~~ll~ 72 (406)
T KOG1479|consen 32 LPWNMFITASDYYYYRFPGYHN--SKNFTSSYTLAAQIPLLLF 72 (406)
T ss_pred cchHhhhccHHHHHhhcCCCch--HHHHHHHHHHHHHHHHHHH
Confidence 33555666666666554 3322 3334444444444444333
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=82.46 E-value=12 Score=35.41 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=43.1
Q ss_pred HHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHHHHHHHHHHHhHH-----hHHHHHHHhHHHHHHH
Q psy13784 34 FIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLL-----RYRKVAAMAAIFSALG 108 (388)
Q Consensus 34 ~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~ 108 (388)
...-++.++..|+..|....+..+ ...++-++..|-......+|.++|.++.+++ |-....++.+.+.++.
T Consensus 114 ~~~~~~~~~l~G~~~Pl~~~~~~~----~~~~~~g~~~g~ly~~ntlGa~~G~l~~~~vLlp~lG~~~t~~~~a~l~~~~ 189 (521)
T PRK03612 114 YVLVLLIGLLIGMEIPLLMRILQR----IRDQHLGHNVATVLAADYLGALVGGLAFPFLLLPRLGLIRTAALTGSLNLLA 189 (521)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh----ccccchhhhhhhhHhHHhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 334456677788888877766665 2232345566667777777777777776666 4333333444444443
Q ss_pred HH
Q psy13784 109 TI 110 (388)
Q Consensus 109 ~~ 110 (388)
.+
T Consensus 190 a~ 191 (521)
T PRK03612 190 AL 191 (521)
T ss_pred HH
Confidence 33
|
|
| >KOG2601|consensus | Back alignment and domain information |
|---|
Probab=80.89 E-value=33 Score=30.75 Aligned_cols=34 Identities=15% Similarity=0.195 Sum_probs=27.5
Q ss_pred chhhhhccCCchhhHHHHHHHHHHHHHHHHHHHH
Q psy13784 305 IPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAV 338 (388)
Q Consensus 305 ~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~ 338 (388)
.......|..|+++|+.+.|+.+..+.....+.-
T Consensus 406 AVtqimQe~VpEseR~vv~gvqnsL~~~ldll~~ 439 (503)
T KOG2601|consen 406 AVTQIMQETVPESERCVVFGVQNSLNSALDLLKD 439 (503)
T ss_pred HHHHHHHHhcchhhhhhhHhHHHHHHHHHHHHHH
Confidence 3346788999999999999999999887766543
|
|
| >TIGR00939 2a57 Equilibrative Nucleoside Transporter (ENT) | Back alignment and domain information |
|---|
Probab=80.68 E-value=37 Score=31.37 Aligned_cols=31 Identities=10% Similarity=-0.140 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhheeecccCCchHHHHhhH
Q psy13784 225 IGGLIIFASVISISFILPHTGVKPLSAASGM 255 (388)
Q Consensus 225 ~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~ 255 (388)
...+..++..+....+..|+..|.-+..+++
T Consensus 53 ~~~v~~l~~~~~~~~~~~~i~~~~Ri~~~lv 83 (437)
T TIGR00939 53 ASQLPSLLFNSLNLFLIFRIPVTVRLLGGLV 83 (437)
T ss_pred HHHHHHHHHHHHHHHHhhccCccchhHHHHH
Confidence 3344444445555555566665433334433
|
|
| >KOG3097|consensus | Back alignment and domain information |
|---|
Probab=80.24 E-value=40 Score=29.57 Aligned_cols=54 Identities=15% Similarity=0.126 Sum_probs=41.0
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcc
Q psy13784 3 KLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAE 57 (388)
Q Consensus 3 r~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~ 57 (388)
++|-|+++.++...+...... =+-+.+..++-.-...|+|.+..+..--+|+++
T Consensus 84 ~~g~K~tm~lav~~Y~lyiA~-Nl~pr~~tlVPa~~~~G~aa~p~W~SkgtYlT~ 137 (390)
T KOG3097|consen 84 FLGTKWTMVLAVFPYALYIAA-NLEPRYETLVPAGLVLGMAAGPIWASKGTYLTP 137 (390)
T ss_pred HHhhHHHHHHHHHHHHHHHHh-hcchhHHhhccHHHhhccccccccccCcceecH
Confidence 578888888777666543322 223677888899999999999999988888877
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 388 | ||||
| 4gby_A | 491 | The Structure Of The Mfs (Major Facilitator Superfa | 4e-15 |
| >pdb|4GBY|A Chain A, The Structure Of The Mfs (Major Facilitator Superfamily) Proton:xylose Symporter Xyle Bound To D-Xylose Length = 491 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 388 | |||
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 4e-08 |
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.1 bits (129), Expect = 4e-08
Identities = 55/356 (15%), Positives = 99/356 (27%), Gaps = 95/356 (26%)
Query: 21 WLLITYSLTITNLFIG-------RFLTGVSEGLSASPA---TIYIAESIMVQNT------ 64
W L++ + F+ +FL + P+ +YI + + N
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 65 ------KLRGSLATWATTARAFGLLQVYFMG----SLLRYRKVAAMAAIFSALGTILITF 114
+ L R + + + + + A + +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWV-----ALDVCLSYK---VQCKM 180
Query: 115 IIPESPAWLNSKGRRGDAEWAAKRL-RLGPPSNQTEP--TSRGDAESGAQGEQMSTTNIF 171
WLN E + L +L Q +P TSR D S + S
Sbjct: 181 --DFKIFWLNL-KNCNSPETVLEMLQKL---LYQIDPNWTSRSDHSSNIKLRIHSIQAEL 234
Query: 172 KEFMKPEAYKPLIIISLFFL-----FQQFSAVNV---IL-----AYMTDFVRSSGFHLLN 218
+ +K + Y+ L L + ++A N+ IL +TDF+ S +
Sbjct: 235 RRLLKSKPYE----NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL--SAATTTH 288
Query: 219 PYFITVIGGLI------IFASVISISFI-LPH--TGVKPLSAASGMGIALSMLVIGTYLL 269
L + + LP P LS+ I +
Sbjct: 289 ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR--------RLSI--IAESIR 338
Query: 270 FEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIP------YLMLGEIFPMEVK 319
A W + + L ++ SS+ L P + L +FP
Sbjct: 339 DGLA-----TWDNWKHVNCDKL-TTIIESSLNVLE-PAEYRKMFDRLS-VFPPSAH 386
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 388 | |||
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 100.0 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 100.0 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 100.0 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.96 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.96 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 99.93 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.92 | |
| 1pw4_A | 451 | Glycerol-3-phosphate transporter; transmembrane, i | 99.54 | |
| 3o7q_A | 438 | L-fucose-proton symporter; transporter, multi-PASS | 99.51 | |
| 2gfp_A | 375 | EMRD, multidrug resistance protein D; membrane pro | 99.49 | |
| 4aps_A | 491 | DI-OR tripeptide H+ symporter; transport protein, | 99.47 | |
| 2xut_A | 524 | Proton/peptide symporter family protein; transport | 99.42 | |
| 4gc0_A | 491 | D-xylose-proton symporter; MFS, transport protein; | 99.12 | |
| 2cfq_A | 417 | Lactose permease; transport, transport mechanism, | 98.98 |
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=327.23 Aligned_cols=365 Identities=23% Similarity=0.416 Sum_probs=289.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHH------------------hhcchhHHHHHHHHHhhhccccccchhhhhccccccc
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLIT------------------YSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQ 62 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~ 62 (388)
+||+|||++++++.+++.+++++++ +++|+++++++|+++|+|.|+..+...++++| +.
T Consensus 79 aDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E---~~ 155 (491)
T 4gc0_A 79 SNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAE---LA 155 (491)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHT---TS
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hC
Confidence 5999999999999999999999998 47899999999999999999999999999999 99
Q ss_pred CchhhhHHHHHHHHHHHHHHHHHHHHHhHH------------hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChh
Q psy13784 63 NTKLRGSLATWATTARAFGLLQVYFMGSLL------------RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRG 130 (388)
Q Consensus 63 ~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~------------~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~ 130 (388)
|+++|++..++.+.+..+|.++++.++... +||..+.+..++.++..+..++ +||||+|+..+++.+
T Consensus 156 p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~peSp~~L~~~~~~~ 234 (491)
T 4gc0_A 156 PAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYT-VPESPRWLMSRGKQE 234 (491)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGG-SCCCHHHHHHTTCHH
T ss_pred CHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhc-CCCChHHHHHcCchh
Confidence 999999999999999999999999888765 6999999888888877766666 999999999999999
Q ss_pred hHHHHHHHhcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy13784 131 DAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR 210 (388)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (388)
++++.+++.+..+.. .++..+.++..+.+++...+.... ..++.........+.++.+.+.+..|.+.+.+
T Consensus 235 ~a~~~l~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (491)
T 4gc0_A 235 QAEGILRKIMGNTLA-------TQAVQEIKHSLDHGRKTGGRLLMF--GVGVIVIGVMLSIFQQFVGINVVLYYAPEVFK 305 (491)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHTTHHHHS--CCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHhHHHhcCCchh-------HHHHHHHHHHHHhhhhhhhHHHHh--cccHHHHHHHHHHHHHHhhhhHHHhcchHHHH
Confidence 998888776542111 000111111111111111111111 12234455556666777788889999999998
Q ss_pred HcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHH
Q psy13784 211 SSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAA 290 (388)
Q Consensus 211 ~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 290 (388)
..+.+..+........++...++.++++++.||+|||+.+..+.....++.+.+....... ...+.....
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~----------~~~~~~~~~ 375 (491)
T 4gc0_A 306 TLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQ----------APGIVALLS 375 (491)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTT----------CCHHHHHHH
T ss_pred hcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcc----------cchHHHHHH
Confidence 8888777777788888999999999999999999999999988888888777765543322 133445555
Q ss_pred HHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh------cc-cchhhHHHHHHHHH
Q psy13784 291 LVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA------LG-NGIFFFYGLVAAIG 363 (388)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~------~g-~~~~~~~~~~~~~~ 363 (388)
..+...++..+..+..+.+.+|++|++.|+++.|+.+..+++++++++.+.+.+.+. .+ ...+++++++++++
T Consensus 376 ~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~ 455 (491)
T 4gc0_A 376 MLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLA 455 (491)
T ss_dssp HHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence 566666777788888899999999999999999999999999999999988876443 33 55788889999999
Q ss_pred HHHhheeccCCCCCCHHHHHhhhcC
Q psy13784 364 TAHVLAYLPETKGKSLEEIIKGFSS 388 (388)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (388)
.++.++++||||+|++||+|+.||+
T Consensus 456 ~i~~~~~~PETkg~tLeei~~~f~~ 480 (491)
T 4gc0_A 456 ALFMWKFVPETKGKTLEELEALWEP 480 (491)
T ss_dssp HHHHHHHCCCCTTCCHHHHGGGTC-
T ss_pred HHHHHheecCCCCCCHHHHHHHhCC
Confidence 9888899999999999999999874
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-35 Score=270.99 Aligned_cols=332 Identities=13% Similarity=0.076 Sum_probs=242.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHh----hcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITY----SLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATT 76 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~ 76 (388)
+||+|||++++++.++.+++.+++++ ++|++.+++.|+++|++.+...+...+++.| ++|+++|++++++...
T Consensus 86 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~---~~~~~~r~~~~~~~~~ 162 (451)
T 1pw4_A 86 SDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH---WWSQKERGGIVSVWNC 162 (451)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHT---TCTTTHHHHHHHHHHH
T ss_pred HHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHH---HCCchhhhHHHHHHHH
Confidence 59999999999999999999999999 9999999999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHhHH----h-HHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCC
Q psy13784 77 ARAFGLLQVYFMGSLL----R-YRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPT 151 (388)
Q Consensus 77 ~~~~G~~~~~~~~~~~----~-w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (388)
+.++|.++++.+++.+ + ||+.|++.+++.++..++.++++||+|+....+++.+.. + .
T Consensus 163 ~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~-~--- 225 (451)
T 1pw4_A 163 AHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK-------------N-D--- 225 (451)
T ss_dssp HHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC-------------C-C---
T ss_pred HHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhhc-------------c-c---
Confidence 9999999999999875 7 999999999998888777777799988643211111000 0 0
Q ss_pred cccccccccc-ccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHH
Q psy13784 152 SRGDAESGAQ-GEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNPYFITVIGGLI 229 (388)
Q Consensus 152 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~ 229 (388)
...+.++.++ +...++...++.++++..+.. .+..+...........+.|.++++ .|+++.+.+.......++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 300 (451)
T 1pw4_A 226 YPDDYNEKAEQELTAKQIFMQYVLPNKLLWYI-----AIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYA 300 (451)
T ss_dssp -------------CCTHHHHHHTSSCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHH
T ss_pred ccccchhhhhcccccccchHHHHHcCHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 0000000000 000111113445555543322 222222333456677888999886 699888899999999999
Q ss_pred HHHHHHhhheeeccc--CCchHHHHhhHHHH-HHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccch
Q psy13784 230 IFASVISISFILPHT--GVKPLSAASGMGIA-LSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIP 306 (388)
Q Consensus 230 ~~~~~~~~g~l~d~~--g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (388)
.+++.++.+++.||+ +||+.+..+..+.. ++.+++.. .. ..+.+....... ..+.......+..
T Consensus 301 ~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~---------~~~~~~~~~~~~-~~g~~~~~~~~~~ 367 (451)
T 1pw4_A 301 GIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM---NP---------AGNPTVDMICMI-VIGFLIYGPVMLI 367 (451)
T ss_dssp HHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTS---CC---------TTCHHHHHHHHH-HHHHHHTHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHH---hc---------ccCHHHHHHHHH-HHHHHHhchHHHH
Confidence 999999999999999 99988777665555 44443322 11 012233333333 3333333344566
Q ss_pred hhhhccCCchhhHHHHHHHHHHHHHH-HHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhhee
Q psy13784 307 YLMLGEIFPMEVKGVAAGLATCLAYI-FGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAY 370 (388)
Q Consensus 307 ~~~~~~~~p~~~r~~~~~~~~~~~~~-g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~ 370 (388)
+.+..|.+|++.|+++.|+.+...++ |..++|.+.|.+.+..| ...+++.+++.+++.++....
T Consensus 368 ~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 368 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999 99999999999999988 667777777777766655443
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-31 Score=239.65 Aligned_cols=301 Identities=14% Similarity=0.056 Sum_probs=227.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHH---HhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLI---TYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTA 77 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~ 77 (388)
+||+|||++++.+.++.+++.+++ .++++++.+++.|+++|++.+...+...+++.| ++|+++|++++++.+.+
T Consensus 85 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~ 161 (438)
T 3o7q_A 85 MKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTV---LGPESSGHFRLNLAQTF 161 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---SSCSTTHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHH---HcCchhHHHHHHHHHHH
Confidence 599999999999999999999999 889999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHHHhHH-----h-------------------------HHHHHHHhHHHHHHHHHHHHh-ccCCCchHHhhc
Q psy13784 78 RAFGLLQVYFMGSLL-----R-------------------------YRKVAAMAAIFSALGTILITF-IIPESPAWLNSK 126 (388)
Q Consensus 78 ~~~G~~~~~~~~~~~-----~-------------------------w~~~f~~~~~~~~~~~~~~~~-~~pesp~~~~~~ 126 (388)
.++|..+++.+++.+ + ||+.|++.+++.++..++.++ ..||+++..
T Consensus 162 ~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--- 238 (438)
T 3o7q_A 162 NSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN--- 238 (438)
T ss_dssp HHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---
T ss_pred HHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---
Confidence 999999999998887 2 999998888777766655544 234443200
Q ss_pred CChhhHHHHHHHhcCCCCCCCCCCCccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHH
Q psy13784 127 GRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMT 206 (388)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (388)
+.+++++..+.++++.+++|..+...+.... ..........+.|
T Consensus 239 -------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~ 282 (438)
T 3o7q_A 239 -------------------------------HSDAKQGSFSASLSRLARIRHWRWAVLAQFC-----YVGAQTACWSYLI 282 (438)
T ss_dssp -------------------------------CCCSSTTSHHHHHHHHTTCSHHHHHHHHHHH-----HHHHHHHHHHHHH
T ss_pred -------------------------------cccccccchhhhHHHHHhChHHHHHHHHHHH-----HHHHHHHHHHHHH
Confidence 0000111233456677777765543322222 2223456677888
Q ss_pred HH-HHHc-CCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccc
Q psy13784 207 DF-VRSS-GFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFN 284 (388)
Q Consensus 207 ~~-~~~~-g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (388)
.+ +++. |++..+.+.......++.+++.++.+++.||++||+.+..+..+..++.+++.. ...
T Consensus 283 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~---------------~~~ 347 (438)
T 3o7q_A 283 RYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAF---------------AGG 347 (438)
T ss_dssp HHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH---------------CCH
T ss_pred HHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH---------------cCC
Confidence 88 7765 998899999999999999999999999999999999998888877777666544 111
Q ss_pred hHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHH
Q psy13784 285 LIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAA 361 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~ 361 (388)
........+.. .+.....+..+.+..|.+|++ ++.+.++.. ...+++.++|.+.|.+.|..| ....+....++.
T Consensus 348 ~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~ 422 (438)
T 3o7q_A 348 HVGLIALTLCS-AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCF 422 (438)
T ss_dssp HHHHHHHHHHH-HHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHH
T ss_pred cHHHHHHHHHH-HHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 22222333333 333445577778889999977 888888877 778999999999999999988 444333333333
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-29 Score=231.44 Aligned_cols=365 Identities=10% Similarity=0.046 Sum_probs=221.4
Q ss_pred CCC-CCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchh--hhHHHHHHHHH
Q psy13784 1 MDK-LGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKL--RGSLATWATTA 77 (388)
Q Consensus 1 sDr-~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~--r~~~~~~~~~~ 77 (388)
+|| +|||+++..+.++.+++.+++++++|++.+++.|+++|++.+...+...+++.| ++|+++ |+++.++.+.+
T Consensus 78 ~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~---~~~~~~~~r~~~~~~~~~~ 154 (491)
T 4aps_A 78 ADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFLKPNVSTLVGT---LYDEHDRRRDAGFSIFVFG 154 (491)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHH---HSSSCTTHHHHHHHHHHHH
T ss_pred HhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhccchHHHHHHH---HcCcccccceeeehHHHHH
Confidence 599 899999999999999999999999999999999999999999999999999999 999988 77888889999
Q ss_pred HHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchH----HhhcCChhhHHHHHHHh----------
Q psy13784 78 RAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAW----LNSKGRRGDAEWAAKRL---------- 139 (388)
Q Consensus 78 ~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~----~~~~~~~~~~~~~~~~~---------- 139 (388)
.++|..++|.+++.+ +||+.|++.++..++..+..++..|+..+. ..++.+.++.++..++.
T Consensus 155 ~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~ 234 (491)
T 4aps_A 155 INLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDPHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAI 234 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHH
Confidence 999999999999887 899999998887776666555432321110 00011112222211110
Q ss_pred ----cCCCCCCCCCCCccccccccc-c----ccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q psy13784 140 ----RLGPPSNQTEPTSRGDAESGA-Q----GEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVR 210 (388)
Q Consensus 140 ----~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (388)
...+..+.++........... . ....+.....+..+++... ... ........+..+.....+.+.+.+
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 311 (491)
T 4aps_A 235 IVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTSTEHLRVVS--YIP-LFIAAVLFWAIEEQGSVVLATFAA 311 (491)
T ss_dssp HHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC------------CTT--HHH-HHHHHHHHHHHHGGGGTHHHHHHH
T ss_pred HHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHHHHHHHHH--HHH-HHHHHHHHHHHHhhccHHHHHHHH
Confidence 000000000000000000000 0 0000000000000111111 111 111111111222334455666665
Q ss_pred H-cCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHH-----HhhHHHHHHHHHHHHHhhcccCccccccccccc
Q psy13784 211 S-SGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSA-----ASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFN 284 (388)
Q Consensus 211 ~-~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 284 (388)
+ .+.+..+.+.......+...++..+.+++.||++||+... .+..+..++.+.+......... ....+.
T Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~ 386 (491)
T 4aps_A 312 ERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAVGLMFAGLSFLLMAIPGALYGT-----SGKVSP 386 (491)
T ss_dssp HSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHHHHHHHHHHHTTTHHHHHHCCC-----CTTCCT
T ss_pred HHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhcCC-----CCCccH
Confidence 4 4665567778888888999999999999999999986654 5555555555544332211110 001122
Q ss_pred hHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhHHHHHHHHHH
Q psy13784 285 LIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGIFFFYGLVAAIGT 364 (388)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 364 (388)
+..... .+..+.......+..+.+..|.+|++.|+++.|+.+...++|..++|.+.+.+.+......+...+++++++.
T Consensus 387 ~~~~~~-~~l~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (491)
T 4aps_A 387 LWLVGS-WALVILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLG 465 (491)
T ss_dssp HHHHHH-HHHHHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 333333 3333333444457778999999999999999999999999999999999998765433677777888777777
Q ss_pred HHhheeccCCCCC
Q psy13784 365 AHVLAYLPETKGK 377 (388)
Q Consensus 365 ~~~~~~~~~~~~~ 377 (388)
++.+...++.+++
T Consensus 466 ~~~~~~~~~~~~~ 478 (491)
T 4aps_A 466 IVLVFLSKRIQGL 478 (491)
T ss_dssp HHHHHC-------
T ss_pred HHHHHHHHHHHHH
Confidence 7666666655543
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.5e-30 Score=228.16 Aligned_cols=305 Identities=14% Similarity=0.087 Sum_probs=220.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATTARAF 80 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~~ 80 (388)
+||+|||+++..+..+.+++.++..++++++.+++.|+++|++.+...+...+++.| +.|+++|++++++.+.+..+
T Consensus 59 ~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 135 (375)
T 2gfp_A 59 SDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRD---LYERTQLRHANSLLNMGILV 135 (375)
T ss_dssp HTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHTSSCCSHHHHHHHHHHH
T ss_pred HHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHH---HCCHHHHHHHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCCccccc
Q psy13784 81 GLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDA 156 (388)
Q Consensus 81 G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
|..++|.+++.+ +||+.|++.++..++..+...+++||+|+... +
T Consensus 136 g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---------------------------- 184 (375)
T 2gfp_A 136 SPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVDA---P---------------------------- 184 (375)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTTC---C----------------------------
T ss_pred HHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCCc---c----------------------------
Confidence 999999999887 99999999999888877756666888764200 0
Q ss_pred cccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHHHHHHH
Q psy13784 157 ESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNPYFITVIGGLIIFASVI 235 (388)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~~~~~~ 235 (388)
+++.++++++.+++|..+...+ ..+...........+.|.++++ .|+++.+.+.......++.+++.+
T Consensus 185 ------~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~ 253 (375)
T 2gfp_A 185 ------RTRLLTSYKTLFGNSGFNCYLL-----MLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAW 253 (375)
T ss_dssp ------CCCTTTCSTHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred ------cccHHHHHHHHhcCcchHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHH
Confidence 0011123345555554333222 2222333345666777777765 688788889999999999999999
Q ss_pred hhheeecccCCchHHHHhhHH-HHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCC
Q psy13784 236 SISFILPHTGVKPLSAASGMG-IALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIF 314 (388)
Q Consensus 236 ~~g~l~d~~g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (388)
+.+++.||.+++. ..+... ...+...+.... .. ..+.+.......+...+.+ ...+....+..|..
T Consensus 254 ~~~~l~~r~~~~~--~~~~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~l~g~~~~-~~~~~~~~~~~~~~ 320 (375)
T 2gfp_A 254 FAGRPNKRFSTLM--WQSVICCLLAGLLMWIPDW-FG---------VMNVWTLLVPAALFFFGAG-MLFPLATSGAMEPF 320 (375)
T ss_dssp HHHTTTTHHHHHH--HHHHHHHHHTSSSSSHHHH-HH---------HHHHHHHHHHHHHHHHHHH-HTSSTTHHHHHTHH
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhh-hc---------cccHHHHHHHHHHHHHHHH-HhhHHHHHHHHHhC
Confidence 9999999988722 222222 222221111100 00 0122333333333333333 34577778999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcccchhhHHHHHHHHHH
Q psy13784 315 PMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALGNGIFFFYGLVAAIGT 364 (388)
Q Consensus 315 p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~ 364 (388)
| ++|+++.|+.+...++|..++|.+.|.+.+..+....+....+.+++.
T Consensus 321 p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~ 369 (375)
T 2gfp_A 321 P-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGLLIV 369 (375)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHH
Confidence 8 789999999999999999999999999887666444444444444433
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-26 Score=209.73 Aligned_cols=326 Identities=13% Similarity=0.114 Sum_probs=197.8
Q ss_pred CCCCCchhHHHHHHHHHHHHH---HHHHhhcch-hHHHHHHHHHhhhccccccchhhhhcccccccCc--hhhhHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGW---LLITYSLTI-TNLFIGRFLTGVSEGLSASPATIYIAESIMVQNT--KLRGSLATWA 74 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~---~~~~~~~~~-~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~--~~r~~~~~~~ 74 (388)
+||+|||++++.+..+.++.. ....+++.. ..+...+.+.|++.+...+.....+.+ +.++ ++|+...+..
T Consensus 67 sDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~g~~ 143 (417)
T 2cfq_A 67 SDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEA---FIEKVSRRSNFEFGRA 143 (417)
T ss_dssp HTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTHHHHTTHHHHHH---HHHHHHHHHTCCHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH---HHHHhhhhcccchHHH
Confidence 599999999999888776532 212233221 123456677676665555444445555 4433 4556677777
Q ss_pred HHHHHHHHHHHHHHHhHH---hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCC
Q psy13784 75 TTARAFGLLQVYFMGSLL---RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPT 151 (388)
Q Consensus 75 ~~~~~~G~~~~~~~~~~~---~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (388)
..+..+|..++|.+++.+ +||..|++.++..++..+..++..||+|+. .+.++
T Consensus 144 ~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~-------------------- 199 (417)
T 2cfq_A 144 RMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSS----ATVAN-------------------- 199 (417)
T ss_dssp SSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCCSCS----SCSSS--------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCcccccc----ccccc--------------------
Confidence 777888999999888877 799999988777655544444423343210 00000
Q ss_pred ccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-C---CCCCcHHHHHHHHH
Q psy13784 152 SRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSS-G---FHLLNPYFITVIGG 227 (388)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g---~s~~~~~~~~~~~~ 227 (388)
.. + +++++.+.++.++.++++..+...+..+... ..+.....+.|.++++. + .+....+.......
T Consensus 200 ~~-~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 269 (417)
T 2cfq_A 200 AV-G----ANHSAFSLKLALELFRQPKLWFLSLYVIGVS-----CTYDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGE 269 (417)
T ss_dssp SS-S----SCCCCCCHHHHHHHTTCHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTSSSHHHHTHHHHHHHHHHH
T ss_pred cc-c----cccccccHHHHHHHhcCCchhhHHHHHHHHH-----HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHH
Confidence 00 0 0000111234456677665543322211111 11233334466665542 2 11233456666777
Q ss_pred HHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchh
Q psy13784 228 LIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPY 307 (388)
Q Consensus 228 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (388)
++..++.++.++++||+|||+.+..+..+.+++.+.+.. ..+.+.......+..... ....+..+
T Consensus 270 ~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~~~~~-~~~~~~~~ 334 (417)
T 2cfq_A 270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--------------ATSALEVVILKTLHMFEV-PFLLVGCF 334 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTT--------------CCSHHHHHHHTTHHHHHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHH--------------hccHHHHHHHHHHHHHHH-HHHHHHHH
Confidence 888899999999999999999888777666665544422 012222222222222222 22223446
Q ss_pred hhhccCCchhhHHHHHHHH-HHHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheeccCCCCCC
Q psy13784 308 LMLGEIFPMEVKGVAAGLA-TCLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPETKGKS 378 (388)
Q Consensus 308 ~~~~~~~p~~~r~~~~~~~-~~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 378 (388)
.+.+|.+|++.|+++.++. +...++|+.++|.+.|.+.+..| ...+...+++.+++.++.+...||+++.+
T Consensus 335 ~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~ 407 (417)
T 2cfq_A 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLS 407 (417)
T ss_dssp HHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCTTC
T ss_pred HHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCchH
Confidence 8999999999999999994 78888999999999999999888 66777778777777776666667665544
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.92 E-value=8e-25 Score=203.94 Aligned_cols=371 Identities=11% Similarity=0.058 Sum_probs=194.1
Q ss_pred CCCC-CchhHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHH---HH
Q psy13784 1 MDKL-GRKPAIILIGIVGIIGWLLITYSL-TITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATW---AT 75 (388)
Q Consensus 1 sDr~-Grr~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~---~~ 75 (388)
+||+ |||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+...+++.| ++|+++|+++.+. ..
T Consensus 78 ~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~---~~~~~~r~~~~~~~~~~~ 154 (524)
T 2xut_A 78 ADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLVSSFMGD---QFDQSNKSLAQKAFDMFY 154 (524)
T ss_dssp HTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHH---TCSTTTTTHHHHHHHHHH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhHHHHHHH---HcCccchHHHHHHHHHHH
Confidence 5999 999999999999999999999999 99999999999999999999999999999 9999999877666 88
Q ss_pred HHHHHHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCC
Q psy13784 76 TARAFGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPT 151 (388)
Q Consensus 76 ~~~~~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (388)
.+.++|..++|.+++.+ +||+.|++.++..++..+..++..|+.++...++++..+..+......+....+.+...
T Consensus 155 ~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (524)
T 2xut_A 155 FTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWLGRKRYIHMPPEPKDPHGFLPVIRSALLTKVEGKGNIG 234 (524)
T ss_dssp HHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCCC--------------------CTTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHhcccccccCCCCccchhHHHHHHHHHhhhhcccCccc
Confidence 99999999999998877 89999999988877665555442232211000000000000000000000000000000
Q ss_pred cc-------------cccccc-----------ccccccccchhhh-----------hccCccchHHHHHHHHHHHHHHhh
Q psy13784 152 SR-------------GDAESG-----------AQGEQMSTTNIFK-----------EFMKPEAYKPLIIISLFFLFQQFS 196 (388)
Q Consensus 152 ~~-------------~~~~~~-----------~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~ 196 (388)
.. .+.++. ...++..+.++.+ ..++++.............. .+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 313 (524)
T 2xut_A 235 LVLALIGGVSAAYALVNIPTLGIVAGLCCAMVLVMGFVGAGASLQLERARKSHPDAAVDGVRSVLRILVLFALVTP-FWS 313 (524)
T ss_dssp HHHHHHHHHHHHHTGGGTTTTCSSHHHHHHHHHHHHHHHTGGGTHHHHSCCSCCSSSSTTTTTHHHHHHHHTTSHH-HHT
T ss_pred hhhhhhhhhhhhhhhcccchhhhhhhhhhhhhhhhcccccchhhHHhhhhccccHhHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 00 000000 0000000001100 00111111111111111111 111
Q ss_pred hHHHHHHHHHHHHHHcCCCC-CcHHHHHHHHHHHHHHHHHhhheee----cccCCc----hHHHHhhHHHHHHHHHHHHH
Q psy13784 197 AVNVILAYMTDFVRSSGFHL-LNPYFITVIGGLIIFASVISISFIL----PHTGVK----PLSAASGMGIALSMLVIGTY 267 (388)
Q Consensus 197 ~~~~~~~~~~~~~~~~g~s~-~~~~~~~~~~~~~~~~~~~~~g~l~----d~~g~~----~~~~~~~~~~~~~~~~~~~~ 267 (388)
.+.....+.+.+..+.+.+. ...+.......++.+++..+.+++. ||.++| +.+..+..+.+++.+.+...
T Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 393 (524)
T 2xut_A 314 LFDQKASTWILQANDMVKPQWFEPAMMQALNPLLVMLLIPFNNFVLYPAIERMGVKLTALRKMGAGIAITGLSWIVVGTI 393 (524)
T ss_dssp TTSSTTTHHHHHHHHSCCCSSSCHHHHHTTSGGGHHHHGGGTTTC------------CCHHHHHTHHHHHHHHHHTTTTT
T ss_pred HHhccchhhHHhHHhcCCCeeecHHHHHHHHHHHHHHhHHHHHhhhHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHH
Confidence 01111112222222333221 2455555555566666666666654 444332 34445555555554443221
Q ss_pred hhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy13784 268 LLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA 347 (388)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 347 (388)
...... ....+.+.......+. +.......+..+.+..|..|++.|++++|+.++..++|+.++|.+.+.+.+.
T Consensus 394 ~~~~~~-----~~~~~~~~~~~~~~l~-g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~ 467 (524)
T 2xut_A 394 QLMMDG-----GSALSIFWQILPYALL-TFGEVLVSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSP 467 (524)
T ss_dssp TTTTTT-----TCCCCSHHHHHHHHHH-HHHHHHHHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSC
T ss_pred HHHhcC-----CCCcCHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 000000 0011223333333333 3333334567778999999999999999999999999999999999988763
Q ss_pred c----------c--cchhhHHHHHHHHHHHHhheeccCCCCCCHHH
Q psy13784 348 L----------G--NGIFFFYGLVAAIGTAHVLAYLPETKGKSLEE 381 (388)
Q Consensus 348 ~----------g--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (388)
. + ...+++.+++++++.++.+...++.++++.++
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (524)
T 2xut_A 468 TVTEQIVQTGMSVTAFQMFFFAGFAILAAIVFALYARSYQMQDHYR 513 (524)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhccchhhh
Confidence 2 2 12266667777777666656666655544433
|
| >1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=4.6e-14 Score=128.63 Aligned_cols=174 Identities=11% Similarity=-0.037 Sum_probs=129.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHh
Q psy13784 189 FFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYL 268 (388)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~ 268 (388)
...+........+....|.+.++. .+..+.++......++..++.++.|+++||+|||+.+..+..+..++.++..+..
T Consensus 35 ~~~~~~~~~~~~~~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~ 113 (451)
T 1pw4_A 35 FGYAAYYLVRKNFALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVP 113 (451)
T ss_dssp HHHHHHHHHHTSHHHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhh
Confidence 333333333445667778888888 9999999999999999999999999999999999999999988888887775511
Q ss_pred hcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhc
Q psy13784 269 LFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLAL 348 (388)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~ 348 (388)
.. . .+.+..++... ..+.......+...+++.|.+|+++|++++++.+....+|..++|.+.+.+.+..
T Consensus 114 ~~-~---------~~~~~l~~~~~-l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~ 182 (451)
T 1pw4_A 114 WA-T---------SSIAVMFVLLF-LCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF 182 (451)
T ss_dssp HH-H---------SSSSHHHHHHH-HHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHT
T ss_pred hc-c---------ccHHHHHHHHH-HHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 10 0 12233333333 3333333445777799999999999999999999999999999999999988877
Q ss_pred c--cchhhHHHHHHHHHHHHhheeccCC
Q psy13784 349 G--NGIFFFYGLVAAIGTAHVLAYLPET 374 (388)
Q Consensus 349 g--~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (388)
+ ...+++.+++.++..++.++..||+
T Consensus 183 g~w~~~f~~~~~~~~~~~~~~~~~~~~~ 210 (451)
T 1pw4_A 183 NDWHAALYMPAFCAILVALFAFAMMRDT 210 (451)
T ss_dssp CCSTTCTHHHHHHHHHHHHHHHHHCCCS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence 6 4456666666666666555566654
|
| >3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=2.1e-13 Score=123.73 Aligned_cols=140 Identities=11% Similarity=-0.066 Sum_probs=111.4
Q ss_pred HhhhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccC
Q psy13784 194 QFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKA 273 (388)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (388)
............|.+.++.|.+..+.++......++..++.++.|+++||+|||+.+..+..+..++.++......
T Consensus 38 ~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~---- 113 (438)
T 3o7q_A 38 WAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAE---- 113 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccc----
Confidence 3333456677788888889999999999999999999999999999999999999999999998888887732111
Q ss_pred ccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q psy13784 274 PIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLH 345 (388)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~ 345 (388)
..+.+.. ....+..+.......+...+++.|.+|+++|+.+.++.+....+|..++|.+.+.+.
T Consensus 114 -------~~~~~~l-~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~ 177 (438)
T 3o7q_A 114 -------IMNYTLF-LVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLI 177 (438)
T ss_dssp -------TTCHHHH-HHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHH
T ss_pred -------cccHHHH-HHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122333 333334444444455677799999999999999999999999999999999999988
|
| >2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.6e-14 Score=125.44 Aligned_cols=166 Identities=14% Similarity=0.003 Sum_probs=129.5
Q ss_pred hhHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCcc
Q psy13784 196 SAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPI 275 (388)
Q Consensus 196 ~~~~~~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (388)
..........|.+.++.|.++.+.+.......++..++.++.|+++||+|||+.+..+.....++.+.....
T Consensus 14 ~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-------- 85 (375)
T 2gfp_A 14 MAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTT-------- 85 (375)
T ss_dssp HHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHh--------
Confidence 334556666777778889999999999999999999999999999999999999999998888888877651
Q ss_pred ccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc-cchhh
Q psy13784 276 VNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG-NGIFF 354 (388)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g-~~~~~ 354 (388)
++.+. .....+..+.......+....+..|.+|+++|++++++.+....+|..++|.+.+.+.+..+ ...+.
T Consensus 86 ------~~~~~-l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~ 158 (375)
T 2gfp_A 86 ------SSLTV-LIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYL 158 (375)
T ss_dssp ------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred ------ccHHH-HHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHH
Confidence 12233 33333334444444557777899999999999999999999999999999999999888778 66677
Q ss_pred HHHHHHHHHHHHhheeccCCCC
Q psy13784 355 FYGLVAAIGTAHVLAYLPETKG 376 (388)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~ 376 (388)
+.++..++..+......||+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~ 180 (375)
T 2gfp_A 159 FLLVLCAGVTFSMARWMPETRP 180 (375)
T ss_dssp HHHHHHHHHHCCCCCSSCCCST
T ss_pred HHHHHHHHHHHHHHHHCcccCC
Confidence 7777776666655566676543
|
| >4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.6e-13 Score=125.12 Aligned_cols=157 Identities=14% Similarity=0.098 Sum_probs=120.6
Q ss_pred hHHHHHHHHHHHHHH------cCCCCCcHHHHHHHHHHHHHHHHHhhheeecc-cCCchHHHHhhHHHHHHHHHHHHHhh
Q psy13784 197 AVNVILAYMTDFVRS------SGFHLLNPYFITVIGGLIIFASVISISFILPH-TGVKPLSAASGMGIALSMLVIGTYLL 269 (388)
Q Consensus 197 ~~~~~~~~~~~~~~~------~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~g~~~~~~~~~~~~~~~~~~~~~~~~ 269 (388)
.++....+.+.++++ .|.+..+.+.......++..++.++.|+++|| +|||+.+..+..+..++.+++..
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~--- 104 (491)
T 4aps_A 28 SYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLAL--- 104 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHH---
Confidence 345566666666654 79999999999999999999999999999999 89999999999888888877754
Q ss_pred cccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhh--HHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy13784 270 FEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEV--KGVAAGLATCLAYIFGFFAVKTWPTLHLA 347 (388)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--r~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 347 (388)
.++.+...+...+.+ .......+...+++.|.+|+++ |+.+.++.+...++|..++|.+.+.+.+.
T Consensus 105 -----------~~~~~~~~~~~~l~g-~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 172 (491)
T 4aps_A 105 -----------PFGASALFGSIILII-IGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEA 172 (491)
T ss_dssp -----------CCSTTHHHHHHHHHH-HHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------hhhHHHHHHHHHHHH-HHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhh
Confidence 112333333333333 3333345777799999999988 88889989999999999999999999998
Q ss_pred cc-cchhhHHHHHHHHHHHHhh
Q psy13784 348 LG-NGIFFFYGLVAAIGTAHVL 368 (388)
Q Consensus 348 ~g-~~~~~~~~~~~~~~~~~~~ 368 (388)
.| ...+++.++..+++.+...
T Consensus 173 ~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 173 AGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHH
Confidence 88 6667666665555554443
|
| >2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.8e-12 Score=118.29 Aligned_cols=157 Identities=13% Similarity=0.053 Sum_probs=119.0
Q ss_pred HHHHHHHHHHHHH-HcC------CCCCcHHHHHHHHHHHHHHHHHhhheeeccc-CCchHHHHhhHHHHHHHHHHHHHhh
Q psy13784 198 VNVILAYMTDFVR-SSG------FHLLNPYFITVIGGLIIFASVISISFILPHT-GVKPLSAASGMGIALSMLVIGTYLL 269 (388)
Q Consensus 198 ~~~~~~~~~~~~~-~~g------~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-g~~~~~~~~~~~~~~~~~~~~~~~~ 269 (388)
++....+.+.+++ +.| +++.+.+.......++..++.++.|+++||+ |||+.+..+..+..++.+++.+.
T Consensus 28 ~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-- 105 (524)
T 2xut_A 28 FYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIF-- 105 (524)
T ss_dssp HHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHh--
Confidence 4556666776665 568 9999999999999999999999999999999 99999999888888887777551
Q ss_pred cccCccccccccccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHH---HHHHHHHHHHHHHHHhHHHHh
Q psy13784 270 FEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGL---ATCLAYIFGFFAVKTWPTLHL 346 (388)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~---~~~~~~~g~~~~~~~~g~l~~ 346 (388)
..+...+....+..+.......+...+++.|.+|+++|+++.+. .+...++|..++|.+.+.+.+
T Consensus 106 ------------~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~ 173 (524)
T 2xut_A 106 ------------EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLK 173 (524)
T ss_dssp ------------SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHH
T ss_pred ------------cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 10222233333334444444557777999999999999766555 889999999999999999988
Q ss_pred hcc-cchhhHHHHHHHHHHHHhh
Q psy13784 347 ALG-NGIFFFYGLVAAIGTAHVL 368 (388)
Q Consensus 347 ~~g-~~~~~~~~~~~~~~~~~~~ 368 (388)
..+ ...+.+.+++.+++.+...
T Consensus 174 ~~g~~~~f~~~~~~~~~~~~~~~ 196 (524)
T 2xut_A 174 NFGAAVAFGIPGVLMFVATVFFW 196 (524)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHH
Confidence 888 6667766666655555443
|
| >4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=4.1e-10 Score=103.65 Aligned_cols=130 Identities=5% Similarity=-0.190 Sum_probs=92.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccc---cccccccchHHHHHHHHH
Q psy13784 218 NPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIV---NFEWGFFNLIPLAALVLN 294 (388)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 294 (388)
..++..+...++.++|+++.|+++||+|||+.+..+.++..++.++.++.......... .......+...+...-+.
T Consensus 56 ~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l 135 (491)
T 4gc0_A 56 LLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRII 135 (491)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHH
Confidence 34566777788999999999999999999999999999988888877642110000000 000012334444555555
Q ss_pred HHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhh
Q psy13784 295 LVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLA 347 (388)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~ 347 (388)
.+....+..+....++.|..|++.|+...++.+.....|..+++.+.......
T Consensus 136 ~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~ 188 (491)
T 4gc0_A 136 GGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARS 188 (491)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccc
Confidence 55555555677789999999999999999999999999988888877665543
|
| >2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=4.4e-10 Score=101.16 Aligned_cols=117 Identities=9% Similarity=0.155 Sum_probs=98.9
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHH-HHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATW-ATTARA 79 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~-~~~~~~ 79 (388)
+||+|||+++..+..+.+++.+..++.++.+.+++..++.+++.+...+....++.| .+|++.|+++.+. .+....
T Consensus 283 ~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~---~~p~~~~g~~~g~~~~~~~~ 359 (417)
T 2cfq_A 283 INRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS---QFEVRFSATIYLVCFCFFKQ 359 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHHHHH---HSCHHHHHHHHHHHHTTTHH
T ss_pred HHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHh
Confidence 499999999999998888888888888888888888888888877766777889999 9999999999998 477888
Q ss_pred HHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCCc
Q psy13784 80 FGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPESP 120 (388)
Q Consensus 80 ~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pesp 120 (388)
+|..++|.+++.+ +++..|.+.+++.++..++.++..||.+
T Consensus 360 lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999998877 7889999988888887777666577654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 388 | ||||
| d1pw4a_ | 447 | f.38.1.1 (A:) Glycerol-3-phosphate transporter {Es | 9e-05 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} Length = 447 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Score = 42.0 bits (97), Expect = 9e-05
Identities = 48/389 (12%), Positives = 105/389 (26%), Gaps = 33/389 (8%)
Query: 1 MDKLGRKP----AIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIA 56
D+ + +IL V + + + +I +F+ FL G +G+ P +
Sbjct: 83 SDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMV 142
Query: 57 ESIMVQNTKLRGSLATWATTARAFGLLQVYFMGSLLRYRKVAAMAAIFSALGTILITFII 116
+ S G+ + F+ + + A + + ++ F
Sbjct: 143 HWWSQKERGGIVS-VWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAF 201
Query: 117 PESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPTSRGDAESGAQGEQMSTTNIFKEFMK 176
S G E+ + E T++
Sbjct: 202 AMMRDTPQSCGLPPIEEYKNDYPDDYNEKAEQELTAKQIF-----------------MQY 244
Query: 177 PEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVIS 236
K L I++ +F ++ T F L + + +
Sbjct: 245 VLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLL 304
Query: 237 ISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLV 296
++ A + L + Y + N ++ +
Sbjct: 305 CGWMSDKVFRGNRGATGVFFMTLVTIATIVYWM----------NPAGNPTVDMICMIVIG 354
Query: 297 ASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKT-WPTLHLALGNGIFFF 355
G + + L E+ P + G AAG Y+ G A G F
Sbjct: 355 FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFM 414
Query: 356 YGLVAAIGTAHVLAYLPETKGKSLEEIIK 384
+ +I +L + + + E++++
Sbjct: 415 VMIGGSILAVILLIVVMIGEKRRHEQLLQ 443
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 388 | |||
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 100.0 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.93 | |
| d1pw4a_ | 447 | Glycerol-3-phosphate transporter {Escherichia coli | 99.54 | |
| d1pv7a_ | 417 | Lactose permease {Escherichia coli [TaxId: 562]} | 99.12 |
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.3e-33 Score=254.17 Aligned_cols=339 Identities=12% Similarity=0.057 Sum_probs=234.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhh----cchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYS----LTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWATT 76 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~~~ 76 (388)
+||+|||+++..+.++.+++.++++++ ++++.+++.|++.|++.|...+....++.| ++|+++|++++++.+.
T Consensus 83 ~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~---~~~~~~r~~~~~~~~~ 159 (447)
T d1pw4a_ 83 SDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVH---WWSQKERGGIVSVWNC 159 (447)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHT---TCTTTHHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHH---HHHhhccccccccccc
Confidence 599999999999999999999998876 588899999999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHhHH-----hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCC
Q psy13784 77 ARAFGLLQVYFMGSLL-----RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPT 151 (388)
Q Consensus 77 ~~~~G~~~~~~~~~~~-----~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (388)
+..+|..+++.++... +||+.|++.+++.++..++.+++.+|+|+........+.. .+ .
T Consensus 160 ~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~--~ 223 (447)
T d1pw4a_ 160 AHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYK--------------ND--Y 223 (447)
T ss_dssp HHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTTC--------------CC---
T ss_pred ccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhhcccchhhhhh--------------hh--c
Confidence 9999999999887765 8999999999999888888888788887532211111000 00 0
Q ss_pred ccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHHHH
Q psy13784 152 SRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS-SGFHLLNPYFITVIGGLII 230 (388)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~s~~~~~~~~~~~~~~~ 230 (388)
.+...++.+++...++...++.++++..+. .....+......+....+.|.++++ .+++..+.+.......+..
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (447)
T d1pw4a_ 224 PDDYNEKAEQELTAKQIFMQYVLPNKLLWY-----IAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAG 298 (447)
T ss_dssp ------------CCTHHHHHHTSSCHHHHH-----HHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHH
T ss_pred ccchhhccccccchhhHHHHHHHcCchHHH-----HHHHhhhhhhhhhcchhhhhhhcccccccccchhhhhhhcchhhh
Confidence 000000011111122223334444443322 2222222333356667778888764 5888888999999999999
Q ss_pred HHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchhhhh
Q psy13784 231 FASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPYLML 310 (388)
Q Consensus 231 ~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (388)
+++.++.+++.||++|++..........+............ ..+.+....... ..++...+..+..+.+.
T Consensus 299 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~ 368 (447)
T d1pw4a_ 299 IPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNP---------AGNPTVDMICMI-VIGFLIYGPVMLIGLHA 368 (447)
T ss_dssp HHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCC---------TTCHHHHHHHHH-HHHHHHTHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhccccccccccchhHHHHHHHHHHHHhcc---------cccHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 99999999999999987655444443333333332211111 112333333333 33333344446667889
Q ss_pred ccCCchhhHHHHHHHHHHHHHHH-HHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheeccC
Q psy13784 311 GEIFPMEVKGVAAGLATCLAYIF-GFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPE 373 (388)
Q Consensus 311 ~~~~p~~~r~~~~~~~~~~~~~g-~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~ 373 (388)
.|.+|++.|+++.|+.+...+++ ..++|.+.|.+.|..| ...++..++..+++.++.....++
T Consensus 369 ~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 433 (447)
T d1pw4a_ 369 LELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIG 433 (447)
T ss_dssp HHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998875 5678999999999999 666777777666666655544443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=2.6e-25 Score=198.05 Aligned_cols=329 Identities=14% Similarity=0.096 Sum_probs=211.5
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHH----HHHHHHHhhhccccccchhhhhcccccccCc--hhhhHHHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNL----FIGRFLTGVSEGLSASPATIYIAESIMVQNT--KLRGSLATWA 74 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~--~~r~~~~~~~ 74 (388)
+||+||||+++++..+..++..+..+..+.... .+.+.+.+.+.+...........+ ..++ +++.+..+..
T Consensus 67 ~Dr~grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 143 (417)
T d1pv7a_ 67 SDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGFCFNAGAPAVEA---FIEKVSRRSNFEFGRA 143 (417)
T ss_dssp HHHHTTCTHHHHHHHHHHHTHHHHHHHTHHHHHHTTCHHHHHHTTTTGGGGGTTHHHHHHH---HHHHHHHHHSCCHHHH
T ss_pred HHHhCchHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHhhhcccccccchhhcccc---cccchhhhhHHHHHHH
Confidence 599999999999999999999988887766554 445555555555544444444433 2332 3445567777
Q ss_pred HHHHHHHHHHHHHHHhHH---hHHHHHHHhHHHHHHHHHHHHhccCCCchHHhhcCChhhHHHHHHHhcCCCCCCCCCCC
Q psy13784 75 TTARAFGLLQVYFMGSLL---RYRKVAAMAAIFSALGTILITFIIPESPAWLNSKGRRGDAEWAAKRLRLGPPSNQTEPT 151 (388)
Q Consensus 75 ~~~~~~G~~~~~~~~~~~---~w~~~f~~~~~~~~~~~~~~~~~~pesp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (388)
......+..+++.+++.+ +|+..+........+..+...+..||+|+....+ ++
T Consensus 144 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-------------------- 200 (417)
T d1pv7a_ 144 RMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDAPSSATVA---NA-------------------- 200 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHSSCCCSCSSSCSS---HH--------------------
T ss_pred hhhhccccccccccccccccccccccccchhhHHHHHHHHHHHHhcccccchhhh---hh--------------------
Confidence 788888888888888877 7777777777777777777777688776421100 00
Q ss_pred ccccccccccccccccchhhhhccCccchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----cCCCCCcHHHHHHHHH
Q psy13784 152 SRGDAESGAQGEQMSTTNIFKEFMKPEAYKPLIIISLFFLFQQFSAVNVILAYMTDFVRS----SGFHLLNPYFITVIGG 227 (388)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~s~~~~~~~~~~~~ 227 (388)
+.+++++.......+..+.+..+............ ........+.+... .+.+....+.......
T Consensus 201 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 (417)
T d1pv7a_ 201 ------VGANHSAFSLKLALELFRQPKLWFLSLYVIGVSCT-----YDVFDQQFANFFTSFFATGEQGTRVFGYVTTMGE 269 (417)
T ss_dssp ------HHSCCCCCCHHHHHHHTTSSHHHHHHHHHHHHHHH-----HHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHH
T ss_pred ------hhhhcccccccccccccccccccchhhhhHHHHHH-----HHhhhccccccccccccccccchhhhcccccccc
Confidence 00001111122223333333323222222221111 11222222222221 1222344566677778
Q ss_pred HHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccccccchHHHHHHHHHHHHHHhccccchh
Q psy13784 228 LIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEWGFFNLIPLAALVLNLVASSVGFLPIPY 307 (388)
Q Consensus 228 ~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (388)
++..++..+.+++.||.++|+.+..+..+..++.+.+.. .++.+.......+...+.+. ..+...
T Consensus 270 ~~~~~~~~~~~~l~~r~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~l~g~~~~~-~~~~~~ 334 (417)
T d1pv7a_ 270 LLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSF--------------ATSALEVVILKTLHMFEVPF-LLVGCF 334 (417)
T ss_dssp HHHHHHHTTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT--------------CCCHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred cccccchhhhhhhhcccccccchhhhHHHHHHhhhcccc--------------ccccchhhHHHHHHHHHHHH-HHHHHH
Confidence 888999999999999999999998888888877777654 12334444443333333333 446777
Q ss_pred hhhccCCchhhHHHHHHHHH-HHHHHHHHHHHHHhHHHHhhcc-cchhhHHHHHHHHHHHHhheeccCCCCCCHHH
Q psy13784 308 LMLGEIFPMEVKGVAAGLAT-CLAYIFGFFAVKTWPTLHLALG-NGIFFFYGLVAAIGTAHVLAYLPETKGKSLEE 381 (388)
Q Consensus 308 ~~~~~~~p~~~r~~~~~~~~-~~~~~g~~~~~~~~g~l~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 381 (388)
.+..|.+|++.|+++.|+.. ....+|..++|.+.|++.|..| ...+++.+++.++..++..+.++++++.++++
T Consensus 335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r 410 (417)
T d1pv7a_ 335 KYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGPLSLLR 410 (417)
T ss_dssp HHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCSSCTTHHH
T ss_pred HHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCCCccchhH
Confidence 89999999999999999865 4567999999999999999999 77888888888888777777777776666543
|
| >d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: Glycerol-3-phosphate transporter domain: Glycerol-3-phosphate transporter species: Escherichia coli [TaxId: 562]
Probab=99.54 E-value=1.7e-14 Score=129.08 Aligned_cols=161 Identities=11% Similarity=-0.025 Sum_probs=119.5
Q ss_pred HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHhhheeecccCCchHHHHhhHHHHHHHHHHHHHhhcccCccccccc
Q psy13784 201 ILAYMTDFVRSSGFHLLNPYFITVIGGLIIFASVISISFILPHTGVKPLSAASGMGIALSMLVIGTYLLFEKAPIVNFEW 280 (388)
Q Consensus 201 ~~~~~~~~~~~~g~s~~~~~~~~~~~~~~~~~~~~~~g~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (388)
+....|. .++.|+|..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.++.+......
T Consensus 44 ~~~~~p~-~~~~g~s~~~~g~~~s~~~~~~~~~~~~~G~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~--------- 113 (447)
T d1pw4a_ 44 FALAMPY-LVEQGFSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWAT--------- 113 (447)
T ss_dssp HHHHHHH-TTSSTTCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHH---------
T ss_pred HHHHHHH-HHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhhccccchhh---------
Confidence 3444454 456799999999999999999999999999999999999999999988888888776522111
Q ss_pred cccchHHHHHHHHHHHHHHhccccchhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHhhcc--cchhhHHHH
Q psy13784 281 GFFNLIPLAALVLNLVASSVGFLPIPYLMLGEIFPMEVKGVAAGLATCLAYIFGFFAVKTWPTLHLALG--NGIFFFYGL 358 (388)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g--~~~~~~~~~ 358 (388)
.+.+..+..-.+.+.+. ....+....++.|.+|+++|+.++++.+....+|..++|.+.+.+.+..+ ...+++.+.
T Consensus 114 -~~~~~~~~~~~~~g~~~-~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~ 191 (447)
T d1pw4a_ 114 -SSIAVMFVLLFLCGWFQ-GMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAF 191 (447)
T ss_dssp -SSSSHHHHHHHHHHHHH-HHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHH
T ss_pred -hhHHHHHHHHHHHHHhh-hhhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhh
Confidence 12233333333333333 33446667899999999999999999999999999999999988777765 555666666
Q ss_pred HHHHHHHHhheeccC
Q psy13784 359 VAAIGTAHVLAYLPE 373 (388)
Q Consensus 359 ~~~~~~~~~~~~~~~ 373 (388)
+.++..++.+...++
T Consensus 192 ~~~~~~~~~~~~~~~ 206 (447)
T d1pw4a_ 192 CAILVALFAFAMMRD 206 (447)
T ss_dssp HHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHhccc
Confidence 666666555555443
|
| >d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: MFS general substrate transporter superfamily: MFS general substrate transporter family: LacY-like proton/sugar symporter domain: Lactose permease species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=5e-11 Score=104.46 Aligned_cols=116 Identities=9% Similarity=0.169 Sum_probs=104.3
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHhhhccccccchhhhhcccccccCchhhhHHHHHH-HHHHH
Q psy13784 1 MDKLGRKPAIILIGIVGIIGWLLITYSLTITNLFIGRFLTGVSEGLSASPATIYIAESIMVQNTKLRGSLATWA-TTARA 79 (388)
Q Consensus 1 sDr~Grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~l~G~g~g~~~~~~~~~i~~~~~~~~~~~r~~~~~~~-~~~~~ 79 (388)
.||+|||+.+..+..+.+++.+...+.++.+.+++..++.|++.+...+...+++.| ..|+++|+++.++. +....
T Consensus 283 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 359 (417)
T d1pv7a_ 283 INRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITS---QFEVRFSATIYLVCFCFFKQ 359 (417)
T ss_dssp HHHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HSCGGGHHHHHHHHHTTTHH
T ss_pred hcccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHH---HCCHhHHHHHHHHHHHHHHH
Confidence 389999999999999999999999999999999999999999999999999999999 99999999999975 55678
Q ss_pred HHHHHHHHHHhHH----hHHHHHHHhHHHHHHHHHHHHhccCCC
Q psy13784 80 FGLLQVYFMGSLL----RYRKVAAMAAIFSALGTILITFIIPES 119 (388)
Q Consensus 80 ~G~~~~~~~~~~~----~w~~~f~~~~~~~~~~~~~~~~~~pes 119 (388)
+|..++|.+.+.+ ||+..|++.+++.++..++..+.+++.
T Consensus 360 ~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~ 403 (417)
T d1pv7a_ 360 LAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP 403 (417)
T ss_dssp HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 9999999988887 899999999999888877777756654
|