Psyllid ID: psy1379

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440------
MLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQRMNTKMDPQDQDAHDKIKELRRVAFEIDVIGGVDASSKRQMGGYAKDYKKLGFKYDINPAQDFTETPPGMLALDCMIYFARNHPEAYTKQKATKKTLEGTAEKVRLSGLPDTDTLSSDVSGQVRLYFSIQFLLDCFAVLVNHSQAGLCVMLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVS
cHHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHccccHHHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccccccccc
cHHHHHHHHHHHHHcccEEcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHccccccccHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHEEcccccccc
MLAHCLLSFVELMDHGIVSWNILETVFIKTVAdhvnnpnpvpeKEIVQASLSILESIAlnsvgkfsqfsqvENHLTLTNLVMHLQNQSPIIQQNAIALINALFIkaepskrkvISATMCSKQVRNAILTsvlqpsggqvgaEMAHQLYVLQTLTLGLLEQrmntkmdpqdqdAHDKIKELRRVAFEIDviggvdasskrqmggyakdykklgfkydinpaqdftetppgmlaLDCMIYFarnhpeaytkqKATKKTLEGTAEKvrlsglpdtdtlssdvsgqVRLYFSIQFLLDCFAVLVNHSQAGLCVMLAHCLLSFVELMDHGIVSWNILETVFIKTVAdhvnnpnpvpeKEIVQASLSILESIAlnsvgkfsqvenHLTLTNLVMHLQNQSPIIQQNAIALINALFIkaepskrkvISATMCSKQVRNAILTSvlqpsggqvs
MLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQRMNTKMDPQDQDAHDKIKELRRVAFEIdviggvdasskrqmggYAKDYKKLGFKYDINPAQDFTETPPGMLALDCMIYFARNHPEAytkqkatkktlegtaekvrlsglpdtdtlssDVSGQVRLYFSIQFLLDCFAVLVNHSQAGLCVMLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILtsvlqpsggqvs
MLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHLQNQSPiiqqnaialinalFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHqlyvlqtltlgllEQRMNTKMDPQDQDAHDKIKELRRVAFEIDVIGGVDASSKRQMGGYAKDYKKLGFKYDINPAQDFTETPPGMLALDCMIYFARNHPEAYTKQKATKKTLEGTAEKVRLSGLPDTDTLSSDVSGQVRLYFSIQFLLDCFAVLVNHSQAGLCVMLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPiiqqnaialinalFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVS
**AHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLE******************KELRRVAFEIDVIGGVDASSKRQMGGYAKDYKKLGFKYDINPAQDFTETPPGMLALDCMIYFARNHP**********************************VSGQVRLYFSIQFLLDCFAVLVNHSQAGLCVMLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILT***********
MLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALN********SQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAE*****VI**TMCSKQVRNAILTSVLQ********EMAHQLYVLQTLTLGLLEQRM************DKIKELRRV*************************KKLGFKYDINPAQDFTETPPGMLALDCMIYFARNHPEAYTK******************GLPDTDTLSSDVSGQVRLYFSIQFLLDCFAVLVNHSQAGLCVMLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEP*KRKVISATMCSKQVRNAILTSVL*P******
MLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQRMNTKMDPQDQDAHDKIKELRRVAFEIDVIGGVDASSKRQMGGYAKDYKKLGFKYDINPAQDFTETPPGMLALDCMIYFARNHPEAYTKQKATKKTLEGTAEKVRLSGLPDTDTLSSDVSGQVRLYFSIQFLLDCFAVLVNHSQAGLCVMLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVL********
MLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQRMNTKMDPQDQDAHDKIKELRRVAFEID*******S**RQMGGYAKDYKKLGFKYDINPAQDFTETPPGMLALDCMIYFARNHPEAYTKQKATKKTLEGTAEKVRLSGLPDTDTLSSDVSGQVRLYFSIQFLLDCFAVLVNHSQAGLCVMLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQP******
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MLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQRMNTKMDPQDQDAHDKIKELRRVAFEIDVIGGVDASSKRQMGGYAKDYKKLGFKYDINPAQDFTETPPGMLALDCMIYFARNHPEAYTKQKATKKTLEGTAEKVRLSGLPDTDTLSSDVSGQVRLYFSIQFLLDCFAVLVNHSQAGLCVMLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query446 2.2.26 [Sep-21-2011]
Q92556 727 Engulfment and cell motil yes N/A 0.544 0.334 0.484 3e-57
Q8BPU7 727 Engulfment and cell motil yes N/A 0.544 0.334 0.484 6e-57
Q5RCC1 720 Engulfment and cell motil yes N/A 0.544 0.337 0.482 1e-56
Q96JJ3 720 Engulfment and cell motil no N/A 0.544 0.337 0.482 2e-56
A4FUD6 720 Engulfment and cell motil no N/A 0.544 0.337 0.478 2e-56
Q8BHL5 732 Engulfment and cell motil no N/A 0.544 0.331 0.460 2e-53
Q8BYZ7 720 Engulfment and cell motil no N/A 0.538 0.333 0.396 2e-42
Q499U2 720 Engulfment and cell motil no N/A 0.538 0.333 0.392 2e-42
Q96BJ8 720 Engulfment and cell motil no N/A 0.538 0.333 0.388 9e-42
A6QR40652 Engulfment and cell motil no N/A 0.533 0.365 0.381 7e-41
>sp|Q92556|ELMO1_HUMAN Engulfment and cell motility protein 1 OS=Homo sapiens GN=ELMO1 PE=1 SV=2 Back     alignment and function desciption
 Score =  223 bits (568), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 121/250 (48%), Positives = 161/250 (64%), Gaps = 7/250 (2%)

Query: 1   MLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALN 60
           ML+  L +FVELMDHGIVSW+     FIK +A  VN      +  I+Q SL+ILES+ LN
Sbjct: 154 MLSFTLTAFVELMDHGIVSWDTFSVAFIKKIASFVNKS--AIDISILQRSLAILESMVLN 211

Query: 61  SVGKFSQFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCS 120
           S   + + +Q    +T+  L+ HLQ     IQ   IA+INALF+KA   +R+ ++  +  
Sbjct: 212 SHDLYQKVAQ---EITIGQLIPHLQGSDQEIQTYTIAVINALFLKAPDERRQEMANILAQ 268

Query: 121 KQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQRMNTKMDPQDQDAHDKIKEL 180
           KQ+R+ ILT V++     +  EMAHQLYVLQ LT  LLE RM TKMDPQDQ   D I EL
Sbjct: 269 KQLRSIILTHVIRAQRA-INNEMAHQLYVLQVLTFNLLEDRMMTKMDPQDQAQRDIIFEL 327

Query: 181 RRVAFEIDV-IGGVDASSKRQMGGYAKDYKKLGFKYDINPAQDFTETPPGMLALDCMIYF 239
           RR+AF+ +        S +++   Y +DYKKLGF   +NPA DFT+TPPGMLALD M+YF
Sbjct: 328 RRIAFDAESEPNNSSGSMEKRKSMYTRDYKKLGFINHVNPAMDFTQTPPGMLALDNMLYF 387

Query: 240 ARNHPEAYTK 249
           A++H +AY +
Sbjct: 388 AKHHQDAYIR 397
Involved in cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility. Acts in assocation with DOCK1 and CRK. Was initially proposed to be required in complex with DOCK1 to activate Rac Rho small GTPases. May enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1.
Homo sapiens (taxid: 9606)
>sp|Q8BPU7|ELMO1_MOUSE Engulfment and cell motility protein 1 OS=Mus musculus GN=Elmo1 PE=1 SV=2 Back     alignment and function description
>sp|Q5RCC1|ELMO2_PONAB Engulfment and cell motility protein 2 OS=Pongo abelii GN=ELMO2 PE=2 SV=1 Back     alignment and function description
>sp|Q96JJ3|ELMO2_HUMAN Engulfment and cell motility protein 2 OS=Homo sapiens GN=ELMO2 PE=1 SV=2 Back     alignment and function description
>sp|A4FUD6|ELMO2_BOVIN Engulfment and cell motility protein 2 OS=Bos taurus GN=ELMO2 PE=2 SV=1 Back     alignment and function description
>sp|Q8BHL5|ELMO2_MOUSE Engulfment and cell motility protein 2 OS=Mus musculus GN=Elmo2 PE=1 SV=1 Back     alignment and function description
>sp|Q8BYZ7|ELMO3_MOUSE Engulfment and cell motility protein 3 OS=Mus musculus GN=Elmo3 PE=1 SV=2 Back     alignment and function description
>sp|Q499U2|ELMO3_RAT Engulfment and cell motility protein 3 OS=Rattus norvegicus GN=Elmo3 PE=2 SV=1 Back     alignment and function description
>sp|Q96BJ8|ELMO3_HUMAN Engulfment and cell motility protein 3 OS=Homo sapiens GN=ELMO3 PE=2 SV=3 Back     alignment and function description
>sp|A6QR40|ELMO3_BOVIN Engulfment and cell motility protein 3 OS=Bos taurus GN=ELMO3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query446
328710276 733 PREDICTED: engulfment and cell motility 0.549 0.334 0.692 2e-98
350403028 726 PREDICTED: engulfment and cell motility 0.544 0.334 0.697 6e-93
332022366 719 Engulfment and cell motility protein 1 [ 0.544 0.337 0.705 7e-93
340728347 726 PREDICTED: engulfment and cell motility 0.544 0.334 0.697 8e-93
383850439 765 PREDICTED: engulfment and cell motility 0.544 0.317 0.697 1e-92
380011794 726 PREDICTED: engulfment and cell motility 0.544 0.334 0.701 2e-92
328787907 726 PREDICTED: engulfment and cell motility 0.544 0.334 0.697 4e-92
322778826 753 hypothetical protein SINV_08273 [Solenop 0.544 0.322 0.693 7e-91
307172364 719 Engulfment and cell motility protein 1 [ 0.544 0.337 0.693 2e-90
307191605 719 Engulfment and cell motility protein 1 [ 0.544 0.337 0.673 1e-89
>gi|328710276|ref|XP_001945196.2| PREDICTED: engulfment and cell motility protein 1-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  365 bits (937), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 173/250 (69%), Positives = 210/250 (84%), Gaps = 5/250 (2%)

Query: 1   MLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVP-EKEIVQASLSILESIAL 59
           MLA+ L SFVELMDHGIVSW+ILET FI  VA +VNN    P E ++VQ+SLSILESI L
Sbjct: 155 MLANALASFVELMDHGIVSWDILETPFINMVASYVNNQTSRPQEAKVVQSSLSILESIVL 214

Query: 60  NSVGKFSQFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMC 119
           NS  K+ Q   VE  +   NLV+ L+NQ+PIIQQNA++LINALF+KA+P+KRK+I++T+C
Sbjct: 215 NSSAKYGQ---VEKEVGFPNLVLRLENQNPIIQQNALSLINALFLKADPAKRKIIASTLC 271

Query: 120 SKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQRMNTKMDPQDQDAHDKIKE 179
           +KQVRN IL +++Q S G+VG+EMAHQLYV+QTL  GLLE+RMNTKMDPQDQDAH+KIKE
Sbjct: 272 TKQVRNVILQNIIQTSSGEVGSEMAHQLYVMQTLCFGLLEERMNTKMDPQDQDAHEKIKE 331

Query: 180 LRRVAFEIDVIGGVDASSKRQMGGYAKDYKKLGFKYDINPAQDFTETPPGMLALDCMIYF 239
           LR++AFE+D I G DA S+RQ+  + KDYKKLGFKYDINPA DFTETPPGMLALDCM+YF
Sbjct: 332 LRKIAFELDTISGGDA-SRRQLSPFTKDYKKLGFKYDINPALDFTETPPGMLALDCMVYF 390

Query: 240 ARNHPEAYTK 249
           ARNH +AYTK
Sbjct: 391 ARNHVDAYTK 400

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|350403028|ref|XP_003486680.1| PREDICTED: engulfment and cell motility protein 1-like [Bombus impatiens] Back     alignment and taxonomy information
>gi|332022366|gb|EGI62678.1| Engulfment and cell motility protein 1 [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|340728347|ref|XP_003402487.1| PREDICTED: engulfment and cell motility protein 1-like [Bombus terrestris] Back     alignment and taxonomy information
>gi|383850439|ref|XP_003700803.1| PREDICTED: engulfment and cell motility protein 1 [Megachile rotundata] Back     alignment and taxonomy information
>gi|380011794|ref|XP_003689979.1| PREDICTED: engulfment and cell motility protein 1-like [Apis florea] Back     alignment and taxonomy information
>gi|328787907|ref|XP_395913.3| PREDICTED: engulfment and cell motility protein 1 [Apis mellifera] Back     alignment and taxonomy information
>gi|322778826|gb|EFZ09242.1| hypothetical protein SINV_08273 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|307172364|gb|EFN63835.1| Engulfment and cell motility protein 1 [Camponotus floridanus] Back     alignment and taxonomy information
>gi|307191605|gb|EFN75102.1| Engulfment and cell motility protein 1 [Harpegnathos saltator] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query446
UNIPROTKB|E1BXG8 728 ELMO1 "Uncharacterized protein 0.708 0.434 0.368 3.9e-45
UNIPROTKB|F1NFA5 744 ELMO1 "Uncharacterized protein 0.544 0.326 0.416 4.8e-44
ZFIN|ZDB-GENE-040426-2069 726 elmo1 "engulfment and cell mot 0.544 0.334 0.405 8.6e-44
UNIPROTKB|F1MQH0 727 ELMO1 "Uncharacterized protein 0.544 0.334 0.412 1.9e-43
UNIPROTKB|E2R7G8 727 ELMO1 "Uncharacterized protein 0.544 0.334 0.412 1.9e-43
UNIPROTKB|Q92556 727 ELMO1 "Engulfment and cell mot 0.544 0.334 0.412 1.9e-43
MGI|MGI:2153044 727 Elmo1 "engulfment and cell mot 0.544 0.334 0.412 5.3e-43
RGD|1308182 727 Elmo1 "engulfment and cell mot 0.544 0.334 0.412 5.3e-43
UNIPROTKB|Q7Z5G9 632 ELMO2 "Engulfment and cell mot 0.544 0.384 0.402 1.5e-42
UNIPROTKB|I3LTY7 582 ELMO2 "Uncharacterized protein 0.544 0.417 0.402 3.2e-42
UNIPROTKB|E1BXG8 ELMO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 478 (173.3 bits), Expect = 3.9e-45, P = 3.9e-45
 Identities = 123/334 (36%), Positives = 175/334 (52%)

Query:     1 MLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALN 60
             ML+  L +FVELMDHGIVSW+     FIK +A +VN      +  I+Q SL+ILES+ LN
Sbjct:   154 MLSFTLTAFVELMDHGIVSWDTFSVAFIKKIASYVNKF--ASDISILQRSLAILESMVLN 211

Query:    61 SVGKFSQFSQVENHLTLTNLVMHLQNQSPXXXXXXXXXXXXXFIKAEPSKRKVISATMCS 120
             S      + +V   +T+  L+ HLQ                 F+KA   KR+ ++  +  
Sbjct:   212 S---HDLYQKVAQEITIGQLIPHLQGTDQEIQTYTIAVINALFLKAPDDKRQEMANILAQ 268

Query:   121 KQVRNAILTSVLQPSGGQVGAEMAHXXXXXXXXXXXXXEQRMNTKMDPQDQDAHDKIKEL 180
             KQ+R+ ILT V++     +  EMAH             E RM TKMDPQDQ   D I EL
Sbjct:   269 KQLRSIILTHVIRAQRA-INNEMAHQLYVLQVLTFNLLEDRMMTKMDPQDQAQRDIIFEL 327

Query:   181 RRVAFEIDVIGGVDASS-KRQMGGYAKDYKKLGFKYDINPAQDFTETPPGMLALDCMIYF 239
             RR+AF+ ++     + S +++   Y +DYKKLGF   +NPA DFT+TPPGMLALD M+YF
Sbjct:   328 RRIAFDAELEPNNSSGSIEKRKSMYTRDYKKLGFINHVNPAMDFTQTPPGMLALDNMLYF 387

Query:   240 ARNHPEAYTKQKATKKTLEGTAE-KVRLSGLPDTDTLSSDVS-GQVRLYFSIQFLLDCFA 297
             A++H +AY +      + E   E     S +  T  L   +  G++R     + LLD   
Sbjct:   388 AKHHQDAYIRIVLENSSREDKHECPFGRSSIELTKMLCEILKVGELRK----KLLLDFLP 443

Query:   298 VLVNHSQAGLCVMLAHCLLSFVELMDHGIVSWNI 331
             + +     G C  L   +LS    MDH  + +N+
Sbjct:   444 LFILRHDDGFCNEL---ILSCA--MDHNKIWFNL 472
GO:0005543 "phospholipid binding" evidence=IEA
GO:0005856 "cytoskeleton" evidence=IEA
GO:0006909 "phagocytosis" evidence=IEA
UNIPROTKB|F1NFA5 ELMO1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2069 elmo1 "engulfment and cell motility 1 (ced-12 homolog, C. elegans)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1MQH0 ELMO1 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2R7G8 ELMO1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q92556 ELMO1 "Engulfment and cell motility protein 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2153044 Elmo1 "engulfment and cell motility 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1308182 Elmo1 "engulfment and cell motility 1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q7Z5G9 ELMO2 "Engulfment and cell motility protein 2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3LTY7 ELMO2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
pfam11841158 pfam11841, DUF3361, Domain of unknown function (DU 5e-37
pfam11841158 pfam11841, DUF3361, Domain of unknown function (DU 5e-35
pfam04727170 pfam04727, ELMO_CED12, ELMO/CED-12 family 5e-20
>gnl|CDD|221258 pfam11841, DUF3361, Domain of unknown function (DUF3361) Back     alignment and domain information 
 Score =  132 bits (334), Expect = 5e-37
 Identities = 64/147 (43%), Positives = 90/147 (61%), Gaps = 3/147 (2%)

Query: 293 LDCFAVLV-NHSQAGLCVMLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVP 351
           LD    ++   S      +LA  L +FVELM+HGIVSW IL   FIK     VN  +   
Sbjct: 13  LDLLISIIEEGSDPCFGEILAFTLTAFVELMEHGIVSWEILSLSFIKKNISFVNKSSL-- 70

Query: 352 EKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIK 411
           +K I+Q +L+ILESI LNS   +  V   +TL +L+ HLQ  +  IQ NAIALINALF+K
Sbjct: 71  DKSILQRALAILESIVLNSPALYQLVAREITLESLLKHLQGSNQEIQTNAIALINALFLK 130

Query: 412 AEPSKRKVISATMCSKQVRNAILTSVL 438
           A+  +R+ ++ T+  KQ+R  IL +++
Sbjct: 131 ADDGERQEMADTLSQKQLRLIILNNII 157

This domain is functionally uncharacterized. This domain is found in eukaryotes. This presumed domain is typically between 154 to 168 amino acids in length. Length = 158
>gnl|CDD|221258 pfam11841, DUF3361, Domain of unknown function (DUF3361) Back     alignment and domain information
>gnl|CDD|218231 pfam04727, ELMO_CED12, ELMO/CED-12 family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 446
KOG2999|consensus 713 100.0
PF11841160 DUF3361: Domain of unknown function (DUF3361) 100.0
KOG2998|consensus302 100.0
PF11841160 DUF3361: Domain of unknown function (DUF3361) 100.0
KOG2999|consensus 713 100.0
PF04727170 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR00681 99.97
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 92.4
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 90.51
PF06367197 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR01047 89.92
cd00020120 ARM Armadillo/beta-catenin-like repeats. An approx 89.02
PLN03200 2102 cellulose synthase-interactive protein; Provisiona 84.58
cd03567139 VHS_GGA VHS domain family, GGA subfamily; GGA (Gol 82.34
smart00288133 VHS Domain present in VPS-27, Hrs and STAM. Unpubl 80.48
PF00790140 VHS: VHS domain; InterPro: IPR002014 The VHS domai 80.39
>KOG2999|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.9e-57  Score=468.74  Aligned_cols=306  Identities=39%  Similarity=0.513  Sum_probs=273.8

Q ss_pred             ChhhHHHHHHHHHhcCCcccccCchHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHH
Q psy1379           1 MLAHCLLSFVELMDHGIVSWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNL   80 (446)
Q Consensus         1 ~Lay~L~a~~~Lme~~~~~W~~l~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~l   80 (446)
                      +|+|+|+||++|||||.|+|+.++.+||.++++||+.+  ..++||+++||+|||++|.+|+..|   ++|.++|++++|
T Consensus       144 ~L~~~L~af~elmehgvvsW~~~~~~fV~~~a~~V~~~--~~~a~~~~~AL~~LE~~vl~s~~~~---~~v~eev~i~~l  218 (713)
T KOG2999|consen  144 LLSTSLRAFSELMEHGVVSWESVSNDFVVSMASYVNAK--REDANTLLAALQMLESLVLGSDTLR---QLVAEEVPIETL  218 (713)
T ss_pred             HHHHHHHHHHHHHhhceeeeeecccHHHHHHHHHHhhh--hhcccchHHHHHHHHHHHhCChHHH---HHHHhcCcHHHH
Confidence            48999999999999999999999999999999999665  7999999999999999999999999   999999999999


Q ss_pred             hhhccCCChHHHHhHHHHHHHHhhccCChhhHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhhcchHHHHHHHHHHHH
Q psy1379          81 VMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQ  160 (446)
Q Consensus        81 v~~L~~~d~~iq~nalaLiNaL~~~a~~~~~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah~L~~~Q~l~l~~Le~  160 (446)
                      ++||+.+|+.+|++|+||||||+++|++++|++++++|+++++|.+|++|+++ +      ++.+|||++|.+++++++.
T Consensus       219 i~hlq~~n~~i~~~aial~nal~~~a~~~~R~~~~~~l~~~~~R~ai~~~~~~-~------~~~~~lyvlq~L~~glle~  291 (713)
T KOG2999|consen  219 IRHLQVSNQRIQTCAIALLNALFRKAPDDKRFEMAKSLEQKQFRNAIHSNVIR-T------ERPIQLYVLQVLTLGLLEV  291 (713)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhhhc-c------cchHHHHHHHHHHHhhhHH
Confidence            99999999999999999999999999999999999999999999999999986 3      5677999999999999999


Q ss_pred             HhcccCCCCCHHHHHHHHHHHHHhccccccC--CCCCccccccCCCchhhhhhccccCCCcccccccCCchHhhHhHHHH
Q psy1379         161 RMNTKMDPQDQDAHDKIKELRRVAFEIDVIG--GVDASSKRQMGGYAKDYKKLGFKYDINPAQDFTETPPGMLALDCMIY  238 (446)
Q Consensus       161 r~~~~~d~~~~~h~~~L~~Lw~~a~p~~~~~--~~~~~~~R~~~~~s~~Wk~LGFq~~~dP~~DFr~~~~G~LgL~nL~y  238 (446)
                      ||++++||.++++++.+++|+.++|+++..|  .+.+.+.|+ .+++++||++||.++.||++||.|||||+|||+||+|
T Consensus       292 Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk-~l~~~~ykklgf~n~~npa~df~etppG~LAldnMvy  370 (713)
T KOG2999|consen  292 RMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRK-ILDIESYKKLGFENRINPAQDFGETPPGRLALDNMVY  370 (713)
T ss_pred             hhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhh-hhhHHHHHhhcccccCChHHhcccCCchHHHHHHHHH
Confidence            9999999999999999999999999987554  133677777 8999999999999999999999999999999999999


Q ss_pred             HHHhChHHHHHHHHhhhcchhhhhhhhhcCCCCccccchhhhccchHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHH
Q psy1379         239 FARNHPEAYTKQKATKKTLEGTAEKVRLSGLPDTDTLSSDVSGQVRLYFSIQFLLDCFAVLVNHSQAGLCVMLAHCLLSF  318 (446)
Q Consensus       239 Fa~~~~d~fskllleQ~~~~~~q~~~k~~aL~~l~~yS~aVtgin~t~fa~efl~dgl~~l~~~~e~g~~~~La~~L~aF  318 (446)
                      ||+|||+.|++++.|+++|++.|+|            +|.-+.|-+|.++.|+++=|-  .++....++.++++..-++|
T Consensus       371 FA~~~~~~y~riVlENSsRedkhec------------pfgr~sieltk~lcEilrVge--~p~E~~~df~pmfFthd~~F  436 (713)
T KOG2999|consen  371 FARNSPQDYRRIVLENSSREDKHEC------------PFGRMSIELTKILCELLRVGE--PPDELDRDFIPMFFTHDTPF  436 (713)
T ss_pred             HHHhCHHHHHHHHHhcccccccCcC------------CcCccHHHHHHHHHHHHhcCC--CchhhcCccceeeecCCCcH
Confidence            9999999999999999999998765            566677888888888662221  12222222448999999999


Q ss_pred             HHHHhhhcc----ccccch
Q psy1379         319 VELMDHGIV----SWNILE  333 (446)
Q Consensus       319 ~eLm~~~i~----swd~l~  333 (446)
                      .|++|-.+.    .|..++
T Consensus       437 ee~FciciqLlnkTWKEMr  455 (713)
T KOG2999|consen  437 EELFCICVQLLNRTWKEMR  455 (713)
T ss_pred             HHHHHHHHHHHHhHHHHHH
Confidence            999997664    565443

>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>KOG2998|consensus Back     alignment and domain information
>PF11841 DUF3361: Domain of unknown function (DUF3361) Back     alignment and domain information
>KOG2999|consensus Back     alignment and domain information
>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2 Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PF06367 Drf_FH3: Diaphanous FH3 Domain; InterPro: IPR010472 Formin homology (FH) proteins play a crucial role in the reorganisation of the actin cytoskeleton, which mediates various functions of the cell cortex including motility, adhesion, and cytokinesis [] Back     alignment and domain information
>cd00020 ARM Armadillo/beta-catenin-like repeats Back     alignment and domain information
>PLN03200 cellulose synthase-interactive protein; Provisional Back     alignment and domain information
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins Back     alignment and domain information
>smart00288 VHS Domain present in VPS-27, Hrs and STAM Back     alignment and domain information
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query446
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 8e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 50.6 bits (120), Expect = 8e-07
 Identities = 71/461 (15%), Positives = 135/461 (29%), Gaps = 132/461 (28%)

Query: 1   MLAHCLLSFVELMDHGIVSWNILETVFIKTVADH-VNNPNPVPEKEIVQASLSILESIAL 59
           +L+    +FV+  D   V  ++ +++  K   DH + + + V     +      L S   
Sbjct: 21  ILSVFEDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRL---FWTLLSKQE 76

Query: 60  NSVGKFSQFSQVENHLTLTNLVMHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMC 119
             V KF     VE  L                + N   L++   IK E            
Sbjct: 77  EMVQKF-----VEEVL----------------RINYKFLMSP--IKTEQR---------- 103

Query: 120 SKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQRMNTKMDPQDQDAH----- 174
                        QPS       M  ++Y+         EQR     D Q    +     
Sbjct: 104 -------------QPS-------MMTRMYI---------EQRDRLYNDNQVFAKYNVSRL 134

Query: 175 DKIKELRRVAFEID-----VIGGVDASSKRQMGGYAKDYKKLGFKYDINPAQDFTETPPG 229
               +LR+   E+      +I G        + G  K +  +     ++    +      
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDG--------VLGSGKTW--VA----LDVCLSYKVQ--- 177

Query: 230 MLALDCMIY---FAR-NHPEAYTKQKATKKTLEGTAEKVRLSGLPDTDTLSSDVSGQVRL 285
              +D  I+       N PE   +               R     +       +  ++R 
Sbjct: 178 -CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 286 YFSIQFLLDCFAVL--VNHSQAGLCVMLAHCLLSFVELMDHGIVSWNILETVFIKTVADH 343
               +   +C  VL  V +++A                 +       IL T   K V D 
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKA-------------WNAFNLSC---KILLTTRFKQVTDF 280

Query: 344 VNNPNP-VPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQNAI 402
           ++         +    +L+  E  +L       +  +     +L   +   +P      +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSL-----LLKYLD-CRPQDLPREVLTTNPR----RL 330

Query: 403 ALINALFIKAEPSKRKVISATMCSKQVRNAILTSV--LQPS 441
           ++I A  I+   +         C K +   I +S+  L+P+
Sbjct: 331 SII-AESIRDGLATWDNWKHVNCDK-LTTIIESSLNVLEPA 369
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query446
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 99.91
3dad_A339 FH1/FH2 domain-containing protein 1; formin, FHOD1 99.83
3eg5_B383 Protein diaphanous homolog 1; protein-protein comp 97.36
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 97.3
2bnx_A386 Diaphanous protein homolog 1; autoinhibition, acti 96.99
2f31_A233 Diaphanous protein homolog 1; formin,MDIA1, protei 96.96
3ul1_B510 Importin subunit alpha-2; arm repeat, armadillo re 96.93
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 95.73
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 95.43
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 94.75
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 93.67
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 93.59
2z6h_A 644 Catenin beta-1, beta-catenin; C-terminal domain, a 93.39
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 92.84
1wa5_B530 Importin alpha subunit; nuclear transport/complex, 92.4
1xm9_A457 Plakophilin 1; armadillo repeat, cell adhesion; 2. 91.04
4b8j_A528 Importin subunit alpha-1A; transport protein, nucl 90.5
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 90.06
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 88.97
4db8_A252 Armadillo-repeat protein; solenoid repeat, de novo 87.92
3tpo_A529 Importin subunit alpha-2; nuclear import, protein 87.91
4hxt_A252 De novo protein OR329; structural genomics, PSI-bi 87.65
4db6_A210 Armadillo repeat protein; solenoid repeat, armadil 86.99
1jdh_A529 Beta-catenin; beta-catenin, protein-protein comple 86.98
2jdq_A450 Importin alpha-1 subunit; transport, PB2 subunit, 85.39
3now_A810 UNC-45 protein, SD10334P; armadillo repeat, HSP90, 84.18
1jdh_A 529 Beta-catenin; beta-catenin, protein-protein comple 83.02
1xqr_A296 HSPBP1 protein; armadillo repeat, superhelical twi 82.72
3g2s_A149 C-terminal fragment of sortilin-related receptor; 82.41
1mhq_A148 ADP-ribosylation factor binding protein GGA2; supe 81.87
2z6g_A 780 B-catenin; FULL-length, beta-catenin, cell adhesio 80.45
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
Probab=99.91  E-value=1.3e-24  Score=218.02  Aligned_cols=162  Identities=14%  Similarity=0.128  Sum_probs=149.7

Q ss_pred             hhhhcCCCCccc-cchhhhccchHHHHHHHH-HhhhhhhhcccccchhhhhhHHHHHHHHHHhh-----hccccccchHH
Q psy1379         263 KVRLSGLPDTDT-LSSDVSGQVRLYFSIQFL-LDCFAVLVNHSQAGLCVMLAHCLLSFVELMDH-----GIVSWNILETV  335 (446)
Q Consensus       263 ~~k~~aL~~l~~-yS~aVtgin~t~fa~efl-~dgl~~l~~~~e~g~~~~La~~L~aF~eLm~~-----~i~swd~l~~~  335 (446)
                      .+++.+|.++.. ++-|.+      ||.||+ ++|+..+.++++++.+++++|+|+||.+||+|     |+++    ...
T Consensus       133 ~~lr~aLfsLk~~~q~D~~------Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs----~~~  202 (339)
T 3dad_A          133 PELRRSLFSLKQIFQEDKD------LVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVA----HSD  202 (339)
T ss_dssp             HHHHHHHHHHHHHHHTCTT------HHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHH----CHH
T ss_pred             HHHHHHHHHHHHHhhcchH------HHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhC----CHH
Confidence            345666777777 888999      999999 99999999999999999999999999999999     7777    689


Q ss_pred             HHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcc----------hhhhhhhcc---cCChHHHHhHH
Q psy1379         336 FIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLT----------LTNLVMHLQ---NQSPIIQQNAI  402 (446)
Q Consensus       336 Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~----------l~~l~~~lq---~~~~~~~~~a~  402 (446)
                      ||++++++++.    .++.|++.||+||+++|.+|+..+..|.++++          +++|+.||+   ++|+++|+|||
T Consensus       203 fI~~lyslv~s----~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~am  278 (339)
T 3dad_A          203 TIQWLYTLCAS----LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTV  278 (339)
T ss_dssp             HHHHHHHGGGC----SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHH
T ss_pred             HHHHHHHHHcC----ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHH
Confidence            99999999984    48999999999999999999999999999999          999999999   89999999999


Q ss_pred             HHHHHHhccCCchh-HHHhhHhhhhhhhHHHHHhccc
Q psy1379         403 ALINALFIKAEPSK-RKVISATMCSKQVRNAILTSVL  438 (446)
Q Consensus       403 al~nal~~~a~~~~-r~~~~~~l~~~~~r~~i~~~ii  438 (446)
                      +|||++|.+||+.+ |.+|++.|+++++|++|.+++=
T Consensus       279 tLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~  315 (339)
T 3dad_A          279 TLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLG  315 (339)
T ss_dssp             HHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHS
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHh
Confidence            99999999999866 9999999999999999999763
>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} Back     alignment and structure
>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B Back     alignment and structure
>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} Back     alignment and structure
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Back     alignment and structure
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Back     alignment and structure
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Back     alignment and structure
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B Back     alignment and structure
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} Back     alignment and structure
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Back     alignment and structure
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Back     alignment and structure
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Back     alignment and structure
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Back     alignment and structure
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A* Back     alignment and structure
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2 Back     alignment and structure
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query446
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 97.29
d2bnxa1343 Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { 96.92
d1jdha_ 529 beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} 96.29
d1wa5b_503 Karyopherin alpha {Baker's yeast (Saccharomyces ce 95.6
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 93.77
d1q1sc_434 Importin alpha {Mouse (Mus musculus) [TaxId: 10090 92.0
d1xqra1264 Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi 88.83
d1juqa_151 ADP-ribosylation factor binding protein Gga3 {Huma 85.43
d1mhqa_143 ADP-ribosylation factor binding protein Gga2 {Huma 84.08
d1elka_153 Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} 83.2
d1ujka_145 ADP-ribosylation factor binding protein Gga1 {Huma 83.09
d1xm9a1457 Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} 82.83
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=0.017  Score=54.26  Aligned_cols=316  Identities=12%  Similarity=0.095  Sum_probs=165.3

Q ss_pred             HHHHHHHHHhcCCccc--c-cCchHHHHHHHHhhcCCCCCCCchhhhHHHHHHHHHhhCCCCCccchhhhhcccchhHHh
Q psy1379           5 CLLSFVELMDHGIVSW--N-ILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQFSQVENHLTLTNLV   81 (446)
Q Consensus         5 ~L~a~~~Lme~~~~~W--~-~l~~~fI~ki~~~v~~~~~~~~~~i~~~alsIL~~~V~~s~~~y~gf~~v~~~v~~~~lv   81 (446)
                      |++++.+|...+. .+  + ......|...+.++..+   .++.|...|+.+|..+...++..-   ..+.+.=.++.|+
T Consensus        33 a~~~l~~l~s~~~-~~~~~~i~~~g~i~~Lv~lL~~~---~~~~v~~~a~~~L~~la~~~~~~~---~~i~~~~~i~~l~  105 (434)
T d1q1sc_          33 ATQAARKLLSREK-QPPIDNIIRAGLIPKFVSFLGKT---DCSPIQFESAWALTNIASGTSEQT---KAVVDGGAIPAFI  105 (434)
T ss_dssp             HHHHHHHHHHSSS-CCCHHHHHHTTCHHHHHHHTTCG---GGHHHHHHHHHHHHHHHTSCHHHH---HHHHHTTHHHHHH
T ss_pred             HHHHHHHHhcCCC-CchHHHHHHCCCHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCChhhh---hHhhhccchhhhh
Confidence            5666666665432 21  1 12345677888888664   567888889999999987665322   3444444588999


Q ss_pred             hhccCCChHHHHhHHHHHHHHhhccCChhhHHHHHHhhhhhhHHHHHHhhhcCCCCCCchhhhhcchHHHHHHHHHHHHH
Q psy1379          82 MHLQNQSPIIQQNAIALINALFIKAEPSKRKVISATMCSKQVRNAILTSVLQPSGGQVGAEMAHQLYVLQTLTLGLLEQR  161 (446)
Q Consensus        82 ~~L~~~d~~iq~nalaLiNaL~~~a~~~~~~~~~~~L~~~~~r~~v~~~ii~~~~~~~~~e~ah~L~~~Q~l~l~~Le~r  161 (446)
                      ..|++.+..++..|+..+..|..+..     +..+.+.+.+.-..+.. ++. . ... ...  . ...+......+...
T Consensus       106 ~~L~~~~~~~~~~a~~~L~nl~~~~~-----~~~~~i~~~~~~~~l~~-~l~-~-~~~-~~~--~-~~~~~~~~~~l~~~  173 (434)
T d1q1sc_         106 SLLASPHAHISEQAVWALGNIAGDGS-----AFRDLVIKHGAIDPLLA-LLA-V-PDL-STL--A-CGYLRNLTWTLSNL  173 (434)
T ss_dssp             HHTTCSCHHHHHHHHHHHHHHHTTCH-----HHHHHHHHTTCHHHHHH-HTC-S-SCG-GGS--C-HHHHHHHHHHHHHH
T ss_pred             hccccCCHHHHHHHHHHHHHHhccch-----HHHHHHHHhhhhhHHHH-HHH-h-ccc-ccc--h-HHHHHHHHHHHHHH
Confidence            99999999999999998888775322     12233334455555555 442 1 111 111  1 11222222223222


Q ss_pred             hcccCCCCC-HHHHHHHHHHHHHhccccccCCCCCccccccCCCchhhhhhccccCCCcccccccCCchHhhHhHHHHHH
Q psy1379         162 MNTKMDPQD-QDAHDKIKELRRVAFEIDVIGGVDASSKRQMGGYAKDYKKLGFKYDINPAQDFTETPPGMLALDCMIYFA  240 (446)
Q Consensus       162 ~~~~~d~~~-~~h~~~L~~Lw~~a~p~~~~~~~~~~~~R~~~~~s~~Wk~LGFq~~~dP~~DFr~~~~G~LgL~nL~yFa  240 (446)
                      ....-.... ......+.-|+.....                              .||  +.+     .-++.++.+.+
T Consensus       174 ~~~~~~~~~~~~~~~~l~~l~~ll~~------------------------------~~~--~~~-----~~a~~~l~~l~  216 (434)
T d1q1sc_         174 CRNKNPAPPLDAVEQILPTLVRLLHH------------------------------NDP--EVL-----ADSCWAISYLT  216 (434)
T ss_dssp             TCCCTTCCCHHHHHHHHHHHHHHTTC------------------------------SCH--HHH-----HHHHHHHHHHT
T ss_pred             hhcccccchhhhhhhHHHHHHHHHhc------------------------------ccc--chh-----hhHHhhhcccc
Confidence            221111111 1233344444443311                              111  112     11334444455


Q ss_pred             HhChHHHHHHHHhhhcchhhhhhhhhcCCCCccccchhhhccchHHHHHHHHHhhhhhhhcccccchhhhhhHHHHHHHH
Q psy1379         241 RNHPEAYTKQKATKKTLEGTAEKVRLSGLPDTDTLSSDVSGQVRLYFSIQFLLDCFAVLVNHSQAGLCVMLAHCLLSFVE  320 (446)
Q Consensus       241 ~~~~d~fskllleQ~~~~~~q~~~k~~aL~~l~~yS~aVtgin~t~fa~efl~dgl~~l~~~~e~g~~~~La~~L~aF~e  320 (446)
                      .+.++ ..+.+......+.                            ..+++           ..+..++...++..+..
T Consensus       217 ~~~~~-~~~~~~~~~~~~~----------------------------Lv~ll-----------~~~~~~~~~~al~~l~~  256 (434)
T d1q1sc_         217 DGPNE-RIEMVVKKGVVPQ----------------------------LVKLL-----------GATELPIVTPALRAIGN  256 (434)
T ss_dssp             SSCHH-HHHHHHTTTCHHH----------------------------HHHHH-----------TCSCHHHHHHHHHHHHH
T ss_pred             hhhhh-hHHHHhhcccchh----------------------------ccccc-----------ccchhhhhhchhhhhhh
Confidence            44332 2333222111111                            11111           01111111222222222


Q ss_pred             HHhhhcc-ccccchHHHHHHHHHhhcCCCCCCchHHHHHHHHHHhhhhhcCchhhhHHhhhcchhhhhhhcccCChHHHH
Q psy1379         321 LMDHGIV-SWNILETVFIKTVADHVNNPNPVPEKEIVQASLSILESIALNSVGKFSQVENHLTLTNLVMHLQNQSPIIQQ  399 (446)
Q Consensus       321 Lm~~~i~-swd~l~~~Fikki~~~vn~~~~~~d~~il~~~l~iLE~~vl~s~~~~~~v~~Ev~l~~l~~~lq~~~~~~~~  399 (446)
                      +..++.. .-..+...+++.+..+++.+    |.++...++..|-++..+++.....+.+.=-++.++..+...++.++.
T Consensus       257 l~~~~~~~~~~~~~~~~~~~l~~ll~~~----~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~  332 (434)
T d1q1sc_         257 IVTGTDEQTQKVIDAGALAVFPSLLTNP----KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQK  332 (434)
T ss_dssp             HTTSCHHHHHHHHHTTGGGGHHHHTTCS----SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHH
T ss_pred             HHhhhhHHHHHHHhccccchHHHhhccc----chhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHhccChHHHH
Confidence            2211100 00001111222334455443    567889999999999888876677676665688999999999999999


Q ss_pred             hHHHHHHHHhccCCchhHHHh
Q psy1379         400 NAIALINALFIKAEPSKRKVI  420 (446)
Q Consensus       400 ~a~al~nal~~~a~~~~r~~~  420 (446)
                      .|...+-.+..++++.....+
T Consensus       333 ~a~~~l~nl~~~~~~~~~~~l  353 (434)
T d1q1sc_         333 EAAWAITNYTSGGTVEQIVYL  353 (434)
T ss_dssp             HHHHHHHHHHHHSCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHH
Confidence            999998888888887665544
>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1elka_ a.118.9.2 (A:) Tom1 protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure