Psyllid ID: psy13807

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200----
Protein Sequence
MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK
Secondary Structure (PSIPRED)
cHHHHHHHccccEEEccHHHHHHHHHcccccccccccccccccHHHHHHcccccccHHHHHHHHHHcccccEEEEEEcccccccccccccEEEEEcccccccccccHHHHcccccccccccEEEEcccccEEEEcccccEEEEcccccccHHHHHHHHHcccccEEEEEEccccccccEEEEEEEEcccccccHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcccccccccHHHHHHHHccccccHHHcccccccHHHHHHHHcccccccHHHHHHHHHccccccEEEEEEcccccEccccccEEEEEEcccccccccccHHHHHHccccEEEEEEEEEcccccEEEEEEHHHcEEEccEEEcHHHHHHHHcccccEEEEEEEEEEEcccEEEEEEEEEEcccccccHHHHHHHHHcc
Coil and Loop (DISEMBL)
MISRHIVKEKCTVLYGTPTMYVDLISSiqplteempniaeelsspvialtagapcsptlfnkirdtfGIKHLIVKVVDkkgnivpmgmcgevcYRGYNVMLGYYgeenkilendewfpsgdffilhengygqvvGRIKDIIIrggeniipKEIEYVLQthpdvveaqvygvpderlGEVVVANielkpgasltqdDIKTYCKGK
Flexible Loop (DISEMBL)
MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKvvdkkgnivPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANielkpgasltqddiktyckgk
Low Complexity Region (SEG)
MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK
Disordered region (IsUnstruct)
****HIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASL************
Disordered Region (DISOPRED)
MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG*
Disordered Region (DISEMBL)
MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK
Disordered Region (DISPRO)
MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	204	2.2.26 [Sep-21-2011]
Q0P4F7	606	Acyl-CoA synthetase famil	yes	N/A	0.946	0.318	0.425	1e-42
O31826	549	Putative acyl-CoA synthet	yes	N/A	0.946	0.351	0.351	3e-36
Q96CM8	615	Acyl-CoA synthetase famil	yes	N/A	0.936	0.310	0.362	3e-35
Q499N5	615	Acyl-CoA synthetase famil	yes	N/A	0.965	0.320	0.397	4e-35
Q4R4Z9	618	Acyl-CoA synthetase famil	N/A	N/A	0.936	0.309	0.370	5e-35
Q5R9G9	615	Acyl-CoA synthetase famil	yes	N/A	0.936	0.310	0.366	6e-35
Q8VCW8	615	Acyl-CoA synthetase famil	yes	N/A	0.936	0.310	0.370	2e-34
Q17QJ1	615	Acyl-CoA synthetase famil	yes	N/A	0.936	0.310	0.362	3e-31
Q9SMT7	514	4-coumarate--CoA ligase-l	yes	N/A	0.632	0.250	0.427	9e-23
O74976	512	Putative peroxisomal-coen	yes	N/A	0.661	0.263	0.397	7e-22

>sp|Q0P4F7|ACSF2_DANRE Acyl-CoA synthetase family member 2, mitochondrial OS=Danio rerio GN=acsf2 PE=2 SV=1

 Score =  172 bits (437), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 103/242 (42%), Positives = 133/242 (54%), Gaps = 49/242 (20%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAPCSPTLFNK 62
           R I KEKCT +YGTPTMY+D++          P++A+ +LSS    + AG+PC P +  K
Sbjct: 334 RAIEKEKCTFVYGTPTMYIDMLGQ--------PDLAKFDLSSVRGGIAAGSPCPPEVMRK 385

Query: 63  IRDTFGIKHLIV------------------------------------KVVD-KKGNIVP 85
           I +  GIK +++                                    KVVD   G IVP
Sbjct: 386 ILNVMGIKEMVIGYGTTENSPVTFCGFPVDSAERKIVTVGCISPHTEAKVVDPTTGEIVP 445

Query: 86  MGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIII 142
           +G  GE+  RGY VML Y+ +E K  E    D W+ +GD   L +  Y ++ GRIKD+II
Sbjct: 446 LGAQGELMIRGYCVMLEYWQDEEKTRECITKDRWYKTGDIASLDQFAYCKIEGRIKDLII 505

Query: 143 RGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
           RGGENI P EIE  L THP ++EAQV GV DER+GE V A I LK G   T ++IK YCK
Sbjct: 506 RGGENIYPAEIEQFLHTHPKILEAQVVGVKDERMGEEVCACIRLKEGQECTVEEIKAYCK 565

Query: 203 GK 204
           GK
Sbjct: 566 GK 567

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.
Danio rerio (taxid: 7955)
EC: 6EC: .EC: 2EC: .EC: 1EC: .EC: -

>sp|O31826|YNGI_BACSU Putative acyl-CoA synthetase YngI OS=Bacillus subtilis (strain 168) GN=yngI PE=3 SV=1

 Score =  151 bits (382), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/242 (35%), Positives = 130/242 (53%), Gaps = 49/242 (20%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNI-AEELSSPVIALTAGAPCSPTLFNK 62
           + + KEKCTVL+G PTM++  +          P+  A +LS+    + AG+PC   +   
Sbjct: 273 KTVEKEKCTVLHGVPTMFIAELHH--------PDFDAYDLSTLRTGIMAGSPCPSEVMKA 324

Query: 63  IRDTFGIKHL---------------------IVKVVDKKGNIVP---------------- 85
           + +  G+K +                      ++ V+  G  +P                
Sbjct: 325 VIERMGMKDITIAYGQTEASPVITQTRANDSFIRRVETTGRALPHTEVKIVEPGTCQEVQ 384

Query: 86  MGMCGEVCYRGYNVMLGYYGEEN---KILENDEWFPSGDFFILHENGYGQVVGRIKDIII 142
            GM GE+C RGY+VM GYY +++   K + +D W  +GD  ++ E+GY ++ GR+KD++I
Sbjct: 385 RGMQGELCTRGYHVMKGYYKDKDATRKAINHDGWLFTGDLAVMDEDGYCRITGRLKDMLI 444

Query: 143 RGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
           RGGENI P+EIE  L  HP V++ QV GVPD + GE   A I+LK G S++ D++K YCK
Sbjct: 445 RGGENIYPREIEEFLYQHPAVLDVQVVGVPDAKFGEEAAAWIKLKDGKSVSPDELKAYCK 504

Query: 203 GK 204
           GK
Sbjct: 505 GK 506

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q96CM8|ACSF2_HUMAN Acyl-CoA synthetase family member 2, mitochondrial OS=Homo sapiens GN=ACSF2 PE=1 SV=2

 Score =  148 bits (373), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 127/240 (52%), Gaps = 49/240 (20%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAPCSPTLFNKIR 64
           I +E+ T LYGTPTM+VD+++         P+ +  ++S+    + AG+P  P L   I 
Sbjct: 345 ISRERGTFLYGTPTMFVDILNQ--------PDFSSYDISTMCGGVIAGSPAPPELIRAII 396

Query: 65  DTFGIKHLIVK-----------------VVDKK--------------------GNIVPMG 87
           +   +K L+V                   V++K                    G +  + 
Sbjct: 397 NKINMKDLVVAYGTTENSPVTFAHFPEDTVEQKAESVGRIMPHTEARIMNMEAGTLAKLN 456

Query: 88  MCGEVCYRGYNVMLGYYGEENKI---LENDEWFPSGDFFILHENGYGQVVGRIKDIIIRG 144
             GE+C RGY VMLGY+GE  K    ++ D+W+ +GD   ++E G+ ++VGR KD+IIRG
Sbjct: 457 TPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMNEQGFCKIVGRSKDMIIRG 516

Query: 145 GENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           GENI P E+E    THP V E QV GV D+R+GE + A I LK G   T ++IK +CKGK
Sbjct: 517 GENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRLKDGEETTVEEIKAFCKGK 576

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q499N5|ACSF2_RAT Acyl-CoA synthetase family member 2, mitochondrial OS=Rattus norvegicus GN=Acsf2 PE=2 SV=1

 Score =  147 bits (372), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 93/234 (39%), Positives = 124/234 (52%), Gaps = 37/234 (15%)

Query: 6   IVKEKCTVLYGTPTMYVDLI-----SSIQPLTEEMPNIAEELSSP--------------- 45
           I +EK T+LYGTPTM+VD++     SS    T     IA  L+ P               
Sbjct: 345 ISREKGTLLYGTPTMFVDILNQPDFSSYDFTTIRGGVIAGSLAPPELIRAIISKMNMKEL 404

Query: 46  --VIALTAGAPCSPTLFNKIRDTFGIK---------HLIVKVVD-KKGNIVPMGMCGEVC 93
             V   T  +P   T  N   DT   K         H   ++V+ + G +  + M GE+C
Sbjct: 405 VVVYGTTENSPV--TFMNFPEDTLEQKAGSVGRIMPHTEAQIVNMETGELTKLNMPGELC 462

Query: 94  YRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIP 150
            RGY VM GY+GE  K  E    D W+ +GD   + E G+ ++VGR KD+IIRGGENI P
Sbjct: 463 IRGYCVMQGYWGEPQKTFETVGQDRWYRTGDIASMDEQGFCRIVGRSKDMIIRGGENIYP 522

Query: 151 KEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
            E+E     HP V EAQV GV D+R+GE + A I LK G + T+++IK +CKGK
Sbjct: 523 AELEDFFHKHPQVQEAQVVGVKDDRMGEEICACIRLKSGETTTEEEIKAFCKGK 576

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q4R4Z9|ACSF2_MACFA Acyl-CoA synthetase family member 2, mitochondrial OS=Macaca fascicularis GN=ACSF2 PE=2 SV=1

 Score =  147 bits (371), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 89/240 (37%), Positives = 130/240 (54%), Gaps = 49/240 (20%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAPCSPTLFNKIR 64
           I +E+ + LYGTPTM+VD+++         P+ +  ++S+    + AG+P  P L   I 
Sbjct: 348 ISRERGSFLYGTPTMFVDILNQ--------PDFSSYDISTMRGGVIAGSPAPPELIRAII 399

Query: 65  DTFGIKHLIVK-----------------VVDKK----GNIVP----------MGMC---- 89
           +   +K L+V                   V++K    G I+P           GM     
Sbjct: 400 NKINMKDLVVAYGTTENSPVTFANFPEDTVEQKAESVGRIMPHTEARIMNMEAGMLAELN 459

Query: 90  --GEVCYRGYNVMLGYYGEENKI---LENDEWFPSGDFFILHENGYGQVVGRIKDIIIRG 144
             GE+C RGY VMLGY+GE  K    ++ D+W+ +GD   ++E G+ ++VGR KD+IIRG
Sbjct: 460 TPGELCIRGYCVMLGYWGEPQKTGEAVDQDKWYRTGDIATMNEQGFCKIVGRSKDMIIRG 519

Query: 145 GENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           GENI P E+E    THP V E QV GV D+R+GE + A I LK G   T +++K +CKGK
Sbjct: 520 GENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRLKDGEETTAEEMKAFCKGK 579

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Macaca fascicularis (taxid: 9541)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q5R9G9|ACSF2_PONAB Acyl-CoA synthetase family member 2, mitochondrial OS=Pongo abelii GN=ACSF2 PE=2 SV=1

 Score =  147 bits (370), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 88/240 (36%), Positives = 129/240 (53%), Gaps = 49/240 (20%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAPCSPTLFNKIR 64
           I +E+ + LYGTPTM+VD+++         P+ +  ++S+    + AG+P  P L   I 
Sbjct: 345 ISRERGSFLYGTPTMFVDILNQ--------PDFSSYDISTMCGGVIAGSPAPPELIRAII 396

Query: 65  DTFGIKHLIVK-----------------VVDKK----GNIVP----------------MG 87
           +   +K L+V                   V++K    G I+P                + 
Sbjct: 397 NKINMKDLVVAYGTPENSPVTFAHFPEDTVEQKAESVGRIMPHTEARIMNMEAGTLAELN 456

Query: 88  MCGEVCYRGYNVMLGYYGEENKI---LENDEWFPSGDFFILHENGYGQVVGRIKDIIIRG 144
             GE+C RGY VMLGY+GE  K    ++ D+W+ +GD   ++E G+ ++VGR KD+IIRG
Sbjct: 457 TPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYRTGDVATMNEQGFCKIVGRSKDMIIRG 516

Query: 145 GENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           GENI P E+E    THP V E QV GV D+R+GE + A I LK G   T ++IK +CKGK
Sbjct: 517 GENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRLKDGEETTVEEIKAFCKGK 576

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Pongo abelii (taxid: 9601)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q8VCW8|ACSF2_MOUSE Acyl-CoA synthetase family member 2, mitochondrial OS=Mus musculus GN=Acsf2 PE=2 SV=1

 Score =  145 bits (366), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 89/240 (37%), Positives = 128/240 (53%), Gaps = 49/240 (20%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAPCSPTLFNKIR 64
           I +EK T+LYGTPTM+VD+++         P+ +  + +S    + AG+P  P L   I 
Sbjct: 345 ISREKGTLLYGTPTMFVDILNQ--------PDFSSYDFTSIRGGVIAGSPAPPELIRAII 396

Query: 65  DTFGIKHLIV-----------------KVVDKK----GNIVP----------------MG 87
           +   +K L+V                   +++K    G I+P                + 
Sbjct: 397 NKMNMKELVVVYGTTENSPVTFMNFPEDTLEQKAGSVGRIMPHTEAQIVNVETGELTNLN 456

Query: 88  MCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIIIRG 144
           + GE+  RGY VM GY+GE  K  E    D+W+ +GD  ++ E G+ ++VGR KD+IIRG
Sbjct: 457 VPGELYIRGYCVMQGYWGEPQKTFETVGQDKWYRTGDIALMDEQGFCKIVGRSKDMIIRG 516

Query: 145 GENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           GENI P E+E     HP V EAQV GV DER+GE + A I LK G + T ++IK +CKGK
Sbjct: 517 GENIYPAELEDFFLKHPQVQEAQVVGVKDERMGEEICACIRLKSGETTTAEEIKAFCKGK 576

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q17QJ1|ACSF2_BOVIN Acyl-CoA synthetase family member 2, mitochondrial OS=Bos taurus GN=ACSF2 PE=2 SV=1

 Score =  134 bits (338), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 87/240 (36%), Positives = 125/240 (52%), Gaps = 49/240 (20%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAPCSPTLFNKIR 64
           I +E+   LYGTPTM+VD+++         P+ +  ++S+    + AG+P  P L   I 
Sbjct: 345 ISRERGCFLYGTPTMFVDVLNQ--------PDFSSYDISTMRGGVIAGSPAPPELIRAII 396

Query: 65  DTFGIKHLIVK-----------------VVDKK--------------------GNIVPMG 87
           +   +K L+V                   V++K                    G +  + 
Sbjct: 397 NKLNMKELVVAYGTTENSPVTFMNFTEDTVEQKAESVGRVMPHTEAQIVNTETGTLTELN 456

Query: 88  MCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIIIRG 144
             GE+C RGY VMLGY+GE  K  E    D+W+ +GD  ++ E G+ ++VGR KD+IIRG
Sbjct: 457 TPGELCIRGYCVMLGYWGEPQKTEEAIGQDKWYRTGDIAMMDEQGFCKIVGRSKDMIIRG 516

Query: 145 GENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           GENI P E+E    THP V E QV GV D+R+GE + A I LK G   T ++IK +CKGK
Sbjct: 517 GENIYPAELEDFFHTHPQVQEVQVVGVKDDRMGEEICACIRLKEGEKTTAEEIKAFCKGK 576

Acyl-CoA synthases catalyze the initial reaction in fatty acid metabolism, by forming a thioester with CoA. Has some preference toward medium-chain substrates. Plays a role in adipodyte differentiation.

Bos taurus (taxid: 9913)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|Q9SMT7|4CLLA_ARATH 4-coumarate--CoA ligase-like 10 OS=Arabidopsis thaliana GN=4CLL10 PE=2 SV=1

 Score =  106 bits (265), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 56/131 (42%), Positives = 79/131 (60%), Gaps = 2/131 (1%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYG 131
           + ++++KG I      GEVC RG NV  GY    E NK      WF +GD      +GY 
Sbjct: 345 MAILNEKGEIQEPNNKGEVCIRGPNVTKGYKNNPEANKAGFEFGWFHTGDIGYFDTDGYL 404

Query: 132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS 191
            +VGRIK++I RGGE I P E++ VL THPDV +   +GVPDE+ GE +   +  + G +
Sbjct: 405 HLVGRIKELINRGGEKISPIEVDAVLLTHPDVSQGVAFGVPDEKYGEEINCAVIPREGTT 464

Query: 192 LTQDDIKTYCK 202
           +T++DIK +CK
Sbjct: 465 VTEEDIKAFCK 475

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 2

EC: .

EC: 1

EC: .

EC: -

>sp|O74976|FAT2_SCHPO Putative peroxisomal-coenzyme A synthetase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC1827.03c PE=1 SV=1

 Score =  103 bits (257), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 56/141 (39%), Positives = 81/141 (57%), Gaps = 6/141 (4%)

Query: 67  FGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYY---GEENKILENDEWFPSGDFF 123
           FG++   +K++D+KGN +P G  GE+C RG NV  GY             D +F +GD  
Sbjct: 334 FGVE---LKILDQKGNEMPQGKEGEICVRGINVTKGYLNNPAANKSSFTKDRFFRTGDEG 390

Query: 124 ILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVAN 183
            L ++GY  + GRIK+++ RGGE I P EI+ VL  HPDV EA  + VPDE+ G+ + A 
Sbjct: 391 KLDKDGYVFITGRIKELVNRGGEKISPAEIDAVLMQHPDVSEAVCFAVPDEKYGQDIQAA 450

Query: 184 IELKPGASLTQDDIKTYCKGK 204
           I    G ++T   +  Y + K
Sbjct: 451 INPVAGKTVTPKQLHDYLEQK 471

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: -

EC: .

EC: -

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
328712423	580	PREDICTED: acyl-CoA synthetase family me	0.965	0.339	0.460	3e-52
157130156	578	AMP dependent coa ligase [Aedes aegypti]	0.941	0.332	0.418	6e-47
157106382	546	AMP dependent coa ligase [Aedes aegypti]	0.941	0.351	0.414	2e-46
158293300	594	AGAP008557-PA [Anopheles gambiae str. PE	0.941	0.323	0.414	4e-46
170028425	853	acetyl-coenzyme A synthetase [Culex quin	0.941	0.225	0.410	7e-46
189240709	575	PREDICTED: similar to CG12512 CG12512-PA	0.936	0.332	0.432	2e-45
157106384	597	AMP dependent coa ligase [Aedes aegypti]	0.950	0.324	0.407	7e-45
157130154	1017	AMP dependent coa ligase [Aedes aegypti]	0.941	0.188	0.422	7e-45
403183212	894	AAEL017299-PA [Aedes aegypti]	0.950	0.217	0.403	7e-45
194760629	595	GF15513 [Drosophila ananassae] gi|190616	0.941	0.322	0.435	8e-45

>gi|328712423|ref|XP_001947925.2| PREDICTED: acyl-CoA synthetase family member 2, mitochondrial-like [Acyrthosiphon pisum]

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 110/239 (46%), Positives = 148/239 (61%), Gaps = 42/239 (17%)

Query: 3   SRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNK 62
           +R I+ EKCT+LYGTPTMY+DLI++    ++E+ +     ++P I L AGA CSP LF +
Sbjct: 301 ARAILAEKCTILYGTPTMYIDLINA----SKELLDQGHTFTTPEIGLCAGALCSPNLFKQ 356

Query: 63  IRDTFGIKHLI------------------------------------VKVVDKKGNIVPM 86
           I+ TF +K L                                     VKVVDK G  VPM
Sbjct: 357 IKTTFNLKRLASIYGMTEASPIVFLSNADESEHTSLTTVGQVLDHSEVKVVDKNGITVPM 416

Query: 87  GMCGEVCYRGYNVMLGYYGEE--NKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRG 144
           G  GEV ++GYNVM GY+ +E   K   +D W  SGD  IL+E+GYG V GRIKDIIIRG
Sbjct: 417 GRPGEVWFKGYNVMPGYWNDEEMTKKAIDDGWLRSGDILILNEDGYGVVTGRIKDIIIRG 476

Query: 145 GENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG 203
           GENI P+ IEY L++HP++++AQV+G+PDERLGEVV A I +  G+++ ++ +K YC G
Sbjct: 477 GENIQPQAIEYFLESHPEIIQAQVFGIPDERLGEVVCAAITITKGSTVDEETVKNYCNG 535

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130156|ref|XP_001661846.1| AMP dependent coa ligase [Aedes aegypti] gi|108872002|gb|EAT36227.1| AAEL011677-PA [Aedes aegypti]

 Score =  192 bits (488), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 100/239 (41%), Positives = 139/239 (58%), Gaps = 47/239 (19%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           IV E+C V+YGTPTMYVDL++ ++    ++P+I        +A+T GAPC+P L+  I+ 
Sbjct: 307 IVSERCNVIYGTPTMYVDLVNEVKKTGTDLPSIK-------LAVTGGAPCAPQLYKDIQS 359

Query: 66  TFGIK------------------------------------HLIVKVVDKKGNIVPMGMC 89
             G++                                    H   KVVD+ G +VP GM 
Sbjct: 360 VLGVEQVKTIYGLTETTCVCFHSVWEESQEKVLTTVGHLGDHWEAKVVDQNGALVPFGMP 419

Query: 90  GEVCYRGYNVMLGYYGEENKILEN---DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
           GE+C RGY  MLGY+ +E K  E    D+W  +GD F+L E+GYG++VGRIK+++IRGGE
Sbjct: 420 GELCVRGYGTMLGYWEDEQKTKETIGMDKWLKTGDQFVLREDGYGKIVGRIKEVVIRGGE 479

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS-LTQDDIKTYCKGK 204
           NI P+EIE VL THPDV+E    GVPD+R+GE V A + L  G +   +  +K +CKGK
Sbjct: 480 NIYPREIEDVLITHPDVLEVHCVGVPDDRMGEEVCAFVRLNNGVNEFDRAQVKEFCKGK 538

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157106382|ref|XP_001649298.1| AMP dependent coa ligase [Aedes aegypti] gi|108868854|gb|EAT33079.1| AAEL014665-PA [Aedes aegypti]

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 99/239 (41%), Positives = 139/239 (58%), Gaps = 47/239 (19%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           IV E+C V+YGTPTMYVDL++ ++    ++P+I        + +T GAPC+P L+  I+ 
Sbjct: 275 IVSERCNVIYGTPTMYVDLVNEVKKTGTDLPSIK-------LVVTGGAPCAPQLYKDIQS 327

Query: 66  TFGIK------------------------------------HLIVKVVDKKGNIVPMGMC 89
             G++                                    H   KVVD+ G++VP GM 
Sbjct: 328 VLGVEQVKTIYGLTETTCVCFHSVWEESQEKVLTTVGHLGDHWEAKVVDQNGDLVPFGMP 387

Query: 90  GEVCYRGYNVMLGYYGEENKILEN---DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
           GE+C RGY  MLGY+ +E K  E    D+W  +GD F+L E+GYG++VGRIK+++IRGGE
Sbjct: 388 GELCVRGYGTMLGYWEDEQKTKETIAIDKWLKTGDQFVLREDGYGKIVGRIKEVVIRGGE 447

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS-LTQDDIKTYCKGK 204
           NI P+EIE VL THPDV+E    GVPD+R+GE V A + L  G +   +  +K +CKGK
Sbjct: 448 NIYPREIEDVLITHPDVLEVHCVGVPDDRMGEEVCAFVRLNNGVNEFDRVQVKEFCKGK 506

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158293300|ref|XP_314666.4| AGAP008557-PA [Anopheles gambiae str. PEST] gi|157016639|gb|EAA10067.4| AGAP008557-PA [Anopheles gambiae str. PEST]

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 99/239 (41%), Positives = 137/239 (57%), Gaps = 47/239 (19%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           IV+E+C+++ GTPTMYVDL+  I            +L SP IA+T GA CSP LF  I+ 
Sbjct: 326 IVRERCSIVLGTPTMYVDLVRRI-------VESGAKLDSPEIAVTGGATCSPKLFADIKH 378

Query: 66  TFGIK------------------------------------HLIVKVVDKKGNIVPMGMC 89
           T G++                                    H   KV+D+ G+IVP G  
Sbjct: 379 TLGVRKVKTVFGMTETTAVIFQSLFEESPEDVQQTVGHVTDHYEAKVIDRDGHIVPFGTA 438

Query: 90  GEVCYRGYNVMLGYYGEENKILEN---DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
           GE+C RGY  MLGY+G+E K  E    D W  +GD F+L E+GYG++VGR+K+++IRGGE
Sbjct: 439 GELCVRGYGTMLGYWGDEKKTKETIAADRWLRTGDQFMLREDGYGKIVGRLKEVVIRGGE 498

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK-PGASLTQDDIKTYCKGK 204
           NI PKE+E  L T+P ++E    GVPDER GE + A + LK P  ++ +++I  YC+GK
Sbjct: 499 NIYPKEVEDYLNTYPKILEVHCIGVPDERTGEELCAYVRLKDPEETIDREEIMRYCEGK 557

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170028425|ref|XP_001842096.1| acetyl-coenzyme A synthetase [Culex quinquefasciatus] gi|167874251|gb|EDS37634.1| acetyl-coenzyme A synthetase [Culex quinquefasciatus]

 Score =  189 bits (479), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 98/239 (41%), Positives = 139/239 (58%), Gaps = 47/239 (19%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           I+KEKC V+YGTPTMYVDL++ ++    ++P +        +A+T GAPC+P LF  IRD
Sbjct: 584 IIKEKCNVIYGTPTMYVDLVNKVRESGAKLPPVD-------VAVTGGAPCAPKLFLDIRD 636

Query: 66  TFGIK------------------------------------HLIVKVVDKKGNIVPMGMC 89
             G+K                                    H   KVVD +GN+VP G  
Sbjct: 637 VLGVKQVKTIYGLTETTAVCFQTLPFDSEENILTTVGHLGDHWEAKVVDSEGNMVPYGTP 696

Query: 90  GEVCYRGYNVMLGYYGEENKI---LENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
           GE+  RGY  MLGY+G+E K       D W  +GD F+L E+GYG++VGRIK+++IRGGE
Sbjct: 697 GELWMRGYGNMLGYWGDEAKTKDTFAEDNWLKTGDQFVLREDGYGKIVGRIKEMVIRGGE 756

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA-SLTQDDIKTYCKGK 204
           NI PKEIE  L +HP ++E    GVPDER+GE + A + L+  + ++ + ++K +C+GK
Sbjct: 757 NIYPKEIEDFLNSHPKILETHCVGVPDERMGEEICAFVRLRDSSQTMDRAELKDFCQGK 815

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240709|ref|XP_001813711.1| PREDICTED: similar to CG12512 CG12512-PA [Tribolium castaneum] gi|270013541|gb|EFA09989.1| hypothetical protein TcasGA2_TC012154 [Tribolium castaneum]

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 103/238 (43%), Positives = 137/238 (57%), Gaps = 47/238 (19%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           I +EKCT+++GTPTMYVDL+   +   E++        SP IA+  GA C+P LF K+  
Sbjct: 311 IKEEKCTIIHGTPTMYVDLVHQQEVRKEDI--------SPEIAVAGGALCAPQLFKKMLS 362

Query: 66  TFGIK------------------------------------HLIVKVVDKKGNIVPMGMC 89
              +K                                    H+ VK+VDK G +VP G  
Sbjct: 363 VLNVKKVKSVYGLTETTAVVFQSMVTESEEKAVSTVGHVGEHVEVKIVDKDGVVVPCGTP 422

Query: 90  GEVCYRGYNVMLGYYGEENKILEN---DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
           GE+C R Y  MLGY+ +E K  E    D W  +GD FIL E+GYG+VVGR+K++IIRGGE
Sbjct: 423 GELCIRAYCNMLGYWEDEAKTKEMIGPDNWLMTGDQFILEEDGYGKVVGRLKEMIIRGGE 482

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           NI PKEIE  L +HP+++E  V G+P ERLGE V A I +KPG  +T DD+ ++CKGK
Sbjct: 483 NIFPKEIEEFLNSHPNILETHVIGLPHERLGEEVCACIRVKPGTKVTFDDMVSFCKGK 540

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157106384|ref|XP_001649299.1| AMP dependent coa ligase [Aedes aegypti] gi|108868855|gb|EAT33080.1| AAEL014662-PA [Aedes aegypti]

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 99/243 (40%), Positives = 139/243 (57%), Gaps = 49/243 (20%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKI 63
           + IV+EKCT++YGTPTM+VDL++ +Q  ++++P +         AL   + CSP L  ++
Sbjct: 324 KAIVEEKCTMIYGTPTMFVDLLNEVQKDSKKLPPLD-------FALIGASSCSPNLILEV 376

Query: 64  RDTFGIK------------------------------------HLIVKVVDKKGNIVPMG 87
           +   G++                                    H   KVVD +GN VP G
Sbjct: 377 KKGLGVREVLAGYGMTEASGATFTSGRGDKTEVALATVGKLMEHFEAKVVDNEGNAVPFG 436

Query: 88  MCGEVCYRGYNVMLGYYGEENK---ILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRG 144
             GE+C RGY  MLGY+ EE K   I+  D W  +GD F+L +NGYG VVGRIK++IIRG
Sbjct: 437 TPGELCLRGYGTMLGYWEEEQKTKEIIGADHWLKTGDQFVLSQNGYGTVVGRIKEVIIRG 496

Query: 145 GENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK---PGASLTQDDIKTYC 201
           GEN+ PKEIE +L THP ++EA   GVPDERL E + A + +K   P  ++  D+IK +C
Sbjct: 497 GENVYPKEIEDILNTHPHLLEAYCIGVPDERLVEEICAFVRVKETAPKGAIDLDEIKQFC 556

Query: 202 KGK 204
           +GK
Sbjct: 557 QGK 559

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157130154|ref|XP_001661845.1| AMP dependent coa ligase [Aedes aegypti] gi|108872001|gb|EAT36226.1| AAEL011676-PA [Aedes aegypti]

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 101/239 (42%), Positives = 135/239 (56%), Gaps = 47/239 (19%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           I+KEKCT +YGTPTMYVDL++ ++   +++P +        +A+T GA CSP LF+ I +
Sbjct: 745 IIKEKCTAIYGTPTMYVDLVNKVRETNQKLPPVD-------LAVTGGATCSPQLFSDILE 797

Query: 66  TFGIK------------------------------------HLIVKVVDKKGNIVPMGMC 89
              ++                                    H   KVVD +GN VP G  
Sbjct: 798 VLNVRKAKTVYGLTEACGIVFQSLFDDSREEILETVGHIMDHFEAKVVDGQGNTVPFGTP 857

Query: 90  GEVCYRGYNVMLGYYGEENKILEN---DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
           GE+  R   +MLGY+G+E K  E    D W  +GD F+L E+GYG++VGRIK+IIIRGGE
Sbjct: 858 GELWVRSSGMMLGYWGDEKKTKETLDVDGWLRTGDQFVLREDGYGKIVGRIKEIIIRGGE 917

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK-PGASLTQDDIKTYCKGK 204
           NI P+EIE  L THP V+E    GVPD R+GE + A + LK     LT D+IK +CKGK
Sbjct: 918 NIFPREIEDYLNTHPKVLETHCVGVPDSRMGEEICAFVRLKEEWQMLTFDEIKDFCKGK 976

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403183212|gb|EJY57933.1| AAEL017299-PA [Aedes aegypti]

 Score =  185 bits (470), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 98/243 (40%), Positives = 140/243 (57%), Gaps = 49/243 (20%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKI 63
           + IV+EKCT++YGTPTM+VDL++ +Q  ++++P +         AL   + CSP L  ++
Sbjct: 620 KAIVEEKCTMIYGTPTMFVDLLNEVQKDSKKLPPLD-------FALIGASSCSPNLILEV 672

Query: 64  RDTFGIK------------------------------------HLIVKVVDKKGNIVPMG 87
           ++  G++                                    H   KV+D +GN VP G
Sbjct: 673 KEGLGVREVLAGYGMTEASGATFTSGRGDKTEVALSTVGKLMEHFEAKVIDLEGNTVPFG 732

Query: 88  MCGEVCYRGYNVMLGYYGEENK---ILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRG 144
             GE+C RGY  MLGY+ EE K   I+  D W  +GD F+L +NGYG VVGRIK++IIRG
Sbjct: 733 TPGELCLRGYGTMLGYWEEEQKTKEIIGADHWLKTGDQFVLSQNGYGTVVGRIKEVIIRG 792

Query: 145 GENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK---PGASLTQDDIKTYC 201
           GEN+ PKEIE +L THP ++EA   GVPDERL E + A + +K   P  ++  D+IK +C
Sbjct: 793 GENVYPKEIEDILNTHPHLLEAYCIGVPDERLVEEICAFVRVKETAPKGAIDLDEIKQFC 852

Query: 202 KGK 204
           +GK
Sbjct: 853 QGK 855

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194760629|ref|XP_001962541.1| GF15513 [Drosophila ananassae] gi|190616238|gb|EDV31762.1| GF15513 [Drosophila ananassae]

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 105/241 (43%), Positives = 135/241 (56%), Gaps = 49/241 (20%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           IV EKC+VL+GTPTMYVDL+++ + L   +  I +       A+T GA  SP L   +R+
Sbjct: 316 IVNEKCSVLHGTPTMYVDLVNTQRKLKLPLGKIKK-------AITGGAIVSPQLIKDVRE 368

Query: 66  TFGIK------------------------------------HLIVKVVDKKGNIVPMGMC 89
             G++                                    H+  KVVD +G  VP G  
Sbjct: 369 VLGVESVRSVYGLTETTAVIFQSLPGDHDDIVLNSVGHIQDHIEAKVVDAEGKCVPYGQP 428

Query: 90  GEVCYRGYNVMLGYYGEENKILEN---DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
           GE+C RGY  MLGY+G+E K  E    D+W  +GD FIL  NGYG++VGR+K++IIRGGE
Sbjct: 429 GELCVRGYVTMLGYHGDEEKTTETIGKDKWLRTGDQFILEANGYGRIVGRLKEMIIRGGE 488

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG---ASLTQDDIKTYCKG 203
           NI PKEIE  L  HP ++EA V GVPDERLGE V A + L  G   AS T + +K Y KG
Sbjct: 489 NIFPKEIEDFLNAHPQIIEAHVIGVPDERLGEEVCAFVRLNEGVDPASFTAEALKAYSKG 548

Query: 204 K 204
           K
Sbjct: 549 K 549

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	204
FB|FBgn0031703	593	CG12512 [Drosophila melanogast	0.656	0.225	0.55	1.3e-48
ZFIN|ZDB-GENE-060825-7	606	acsf2 "acyl-CoA synthetase fam	0.656	0.221	0.536	1.5e-44
UNIPROTKB|Q5LQG2	571	SPO2528 "AMP-binding enzyme" [	0.656	0.234	0.492	5e-42
TIGR_CMR|SPO_2528	571	SPO_2528 "AMP-binding enzyme"	0.656	0.234	0.492	5e-42
UNIPROTKB|B4DUF5	455	ACSF2 "Acyl-CoA synthetase fam	0.656	0.294	0.456	1.9e-37
WB|WBGene00018488	623	acs-1 [Caenorhabditis elegans	0.656	0.215	0.474	1.2e-36
UNIPROTKB|Q9UAV8	623	acs-1 "Protein ACS-1, isoform	0.656	0.215	0.474	1.2e-36
TIGR_CMR|GSU_1103	552	GSU_1103 "long-chain-fatty-aci	0.642	0.237	0.488	1.8e-36
UNIPROTKB|E9PF16	572	ACSF2 "Acyl-CoA synthetase fam	0.656	0.234	0.456	2.8e-36
UNIPROTKB|F1PTR3	612	ACSF2 "Uncharacterized protein	0.686	0.228	0.458	2.9e-36

FB|FBgn0031703 CG12512 [Drosophila melanogaster (taxid:7227)]

 Score = 396 (144.5 bits), Expect = 1.3e-48, Sum P(3) = 1.3e-48
 Identities = 77/140 (55%), Positives = 95/140 (67%)

Query:    71 HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHE 127
             H+  KVVD +G  VP G  GE+C RGY  MLGY+ +E K  E   ND W  +GD F+L  
Sbjct:   409 HIEAKVVDAEGRCVPFGQPGELCVRGYTTMLGYHDDEEKTKETIGNDRWLRTGDQFVLEA 468

Query:   128 NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK 187
             NGYG++VGR+K+++IRGGENI PKEIE  L  HP V+EA V GVPDERLGE V A + L+
Sbjct:   469 NGYGRIVGRLKEMLIRGGENIFPKEIEDFLNAHPQVIEAHVIGVPDERLGEEVCAYVRLE 528

Query:   188 PG---ASLTQDDIKTYCKGK 204
              G   AS T + +K Y KGK
Sbjct:   529 EGVDPASFTAETLKAYAKGK 548

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

ZFIN|ZDB-GENE-060825-7 acsf2 "acyl-CoA synthetase family member 2" [Danio rerio (taxid:7955)]

 Score = 350 (128.3 bits), Expect = 1.5e-44, Sum P(2) = 1.5e-44
 Identities = 74/138 (53%), Positives = 89/138 (64%)

Query:    71 HLIVKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILH 126
             H   KVVD   G IVP+G  GE+  RGY VML Y+ +E K  E    D W+ +GD   L 
Sbjct:   430 HTEAKVVDPTTGEIVPLGAQGELMIRGYCVMLEYWQDEEKTRECITKDRWYKTGDIASLD 489

Query:   127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL 186
             +  Y ++ GRIKD+IIRGGENI P EIE  L THP ++EAQV GV DER+GE V A I L
Sbjct:   490 QFAYCKIEGRIKDLIIRGGENIYPAEIEQFLHTHPKILEAQVVGVKDERMGEEVCACIRL 549

Query:   187 KPGASLTQDDIKTYCKGK 204
             K G   T ++IK YCKGK
Sbjct:   550 KEGQECTVEEIKAYCKGK 567

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006631 "fatty acid metabolic process" evidence=IEA

UNIPROTKB|Q5LQG2 SPO2528 "AMP-binding enzyme" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 374 (136.7 bits), Expect = 5.0e-42, Sum P(2) = 5.0e-42
 Identities = 67/136 (49%), Positives = 95/136 (69%)

Query:    71 HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHEN 128
             HL VK+VD  GN VP+G+ GE+C RGY+VM GY+ +  +  E   D W  +GD  +L  +
Sbjct:   392 HLEVKIVDDTGNTVPVGVQGELCTRGYSVMQGYWDDPERTAEAIRDGWMHTGDLAVLDAD 451

Query:   129 GYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKP 188
             G+  + GR+KD+IIRGGENI P+EIE  L  HPD+ E QV+G+PD R+GE V A +  KP
Sbjct:   452 GFCTITGRVKDMIIRGGENIYPREIEEFLFGHPDIKEVQVFGIPDARMGEEVCAWVVAKP 511

Query:   189 GASLTQDDIKTYCKGK 204
             G  ++ +D++TYC+G+
Sbjct:   512 GCEISAEDVRTYCRGQ 527

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|SPO_2528 SPO_2528 "AMP-binding enzyme" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 374 (136.7 bits), Expect = 5.0e-42, Sum P(2) = 5.0e-42
 Identities = 67/136 (49%), Positives = 95/136 (69%)

Query:    71 HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHEN 128
             HL VK+VD  GN VP+G+ GE+C RGY+VM GY+ +  +  E   D W  +GD  +L  +
Sbjct:   392 HLEVKIVDDTGNTVPVGVQGELCTRGYSVMQGYWDDPERTAEAIRDGWMHTGDLAVLDAD 451

Query:   129 GYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKP 188
             G+  + GR+KD+IIRGGENI P+EIE  L  HPD+ E QV+G+PD R+GE V A +  KP
Sbjct:   452 GFCTITGRVKDMIIRGGENIYPREIEEFLFGHPDIKEVQVFGIPDARMGEEVCAWVVAKP 511

Query:   189 GASLTQDDIKTYCKGK 204
             G  ++ +D++TYC+G+
Sbjct:   512 GCEISAEDVRTYCRGQ 527

GO:0003824 "catalytic activity" evidence=ISS

GO:0008150 "biological_process" evidence=ND

GO:0016208 "AMP binding" evidence=ISS

UNIPROTKB|B4DUF5 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 326 (119.8 bits), Expect = 1.9e-37, Sum P(2) = 1.9e-37
 Identities = 63/138 (45%), Positives = 90/138 (65%)

Query:    71 HLIVKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYYGEENKI---LENDEWFPSGDFFILH 126
             H   ++++ + G +  +   GE+C RGY VMLGY+GE  K    ++ D+W+ +GD   ++
Sbjct:   279 HTEARIMNMEAGTLAKLNTPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMN 338

Query:   127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL 186
             E G+ ++VGR KD+IIRGGENI P E+E    THP V E QV GV D+R+GE + A I L
Sbjct:   339 EQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRL 398

Query:   187 KPGASLTQDDIKTYCKGK 204
             K G   T ++IK +CKGK
Sbjct:   399 KDGEETTVEEIKAFCKGK 416

GO:0016874 "ligase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

WB|WBGene00018488 acs-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 328 (120.5 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
 Identities = 66/139 (47%), Positives = 87/139 (62%)

Query:    71 HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEEN---KILENDEWFPSGDFFILHE 127
             HL   +VDK+  IVP G+ GEV  RGY+VM  Y+  E    K +  D W+ +GD  ++H+
Sbjct:   434 HLEAAIVDKRNCIVPRGVKGEVIVRGYSVMRCYWNSEEQTKKEITQDRWYHTGDIAVMHD 493

Query:   128 NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK 187
             NG   +VGR KD+I+RGGENI P E+E  L  H  V +  + GVPDER GEVV A + L 
Sbjct:   494 NGTISIVGRSKDMIVRGGENIYPTEVEQFLFKHQSVEDVHIVGVPDERFGEVVCAWVRLH 553

Query:   188 PGAS--LTQDDIKTYCKGK 204
               A    T++DIK +CKGK
Sbjct:   554 ESAEGKTTEEDIKAWCKGK 572

GO:0003824 "catalytic activity" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006915 "apoptotic process" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0019915 "lipid storage" evidence=IMP

UNIPROTKB|Q9UAV8 acs-1 "Protein ACS-1, isoform a" [Caenorhabditis elegans (taxid:6239)]

 Score = 328 (120.5 bits), Expect = 1.2e-36, Sum P(2) = 1.2e-36
 Identities = 66/139 (47%), Positives = 87/139 (62%)

Query:    71 HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEEN---KILENDEWFPSGDFFILHE 127
             HL   +VDK+  IVP G+ GEV  RGY+VM  Y+  E    K +  D W+ +GD  ++H+
Sbjct:   434 HLEAAIVDKRNCIVPRGVKGEVIVRGYSVMRCYWNSEEQTKKEITQDRWYHTGDIAVMHD 493

Query:   128 NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK 187
             NG   +VGR KD+I+RGGENI P E+E  L  H  V +  + GVPDER GEVV A + L 
Sbjct:   494 NGTISIVGRSKDMIVRGGENIYPTEVEQFLFKHQSVEDVHIVGVPDERFGEVVCAWVRLH 553

Query:   188 PGAS--LTQDDIKTYCKGK 204
               A    T++DIK +CKGK
Sbjct:   554 ESAEGKTTEEDIKAWCKGK 572

GO:0045197 "establishment or maintenance of epithelial cell apical/basal polarity" evidence=IMP

TIGR_CMR|GSU_1103 GSU_1103 "long-chain-fatty-acid--CoA ligase, putative" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 347 (127.2 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
 Identities = 66/135 (48%), Positives = 95/135 (70%)

Query:    74 VKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYG--EEN-KILENDEWFPSGDFFILHENG 129
             VK+VD + G  +P G  GE+C RGY VM GYY   EE  + ++ D W  +GD  ++ ENG
Sbjct:   372 VKIVDIETGAELPPGKQGELCTRGYLVMKGYYKMPEETARAIDADGWLHTGDLAVMDENG 431

Query:   130 YGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
             Y ++ GRIK++IIRGGENI P+EIE  L THP + + Q+YGVPD + GE V+A + LK G
Sbjct:   432 YCKITGRIKNMIIRGGENIYPREIEEFLYTHPKISDVQIYGVPDRKYGEQVMAAVILKKG 491

Query:   190 ASLTQDDIKTYCKGK 204
              ++T++D++ +C+GK
Sbjct:   492 DTMTEEDVRDFCRGK 506

GO:0004467 "long-chain fatty acid-CoA ligase activity" evidence=ISS

GO:0006631 "fatty acid metabolic process" evidence=ISS

UNIPROTKB|E9PF16 ACSF2 "Acyl-CoA synthetase family member 2, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 326 (119.8 bits), Expect = 2.8e-36, Sum P(2) = 2.8e-36
 Identities = 63/138 (45%), Positives = 90/138 (65%)

Query:    71 HLIVKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYYGEENKI---LENDEWFPSGDFFILH 126
             H   ++++ + G +  +   GE+C RGY VMLGY+GE  K    ++ D+W+ +GD   ++
Sbjct:   396 HTEARIMNMEAGTLAKLNTPGELCIRGYCVMLGYWGEPQKTEEAVDQDKWYWTGDVATMN 455

Query:   127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL 186
             E G+ ++VGR KD+IIRGGENI P E+E    THP V E QV GV D+R+GE + A I L
Sbjct:   456 EQGFCKIVGRSKDMIIRGGENIYPAELEDFFHTHPKVQEVQVVGVKDDRMGEEICACIRL 515

Query:   187 KPGASLTQDDIKTYCKGK 204
             K G   T ++IK +CKGK
Sbjct:   516 KDGEETTVEEIKAFCKGK 533

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|F1PTR3 ACSF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 327 (120.2 bits), Expect = 2.9e-36, Sum P(2) = 2.9e-36
 Identities = 67/146 (45%), Positives = 93/146 (63%)

Query:    65 DTFG--IKHLIVKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYYGEENKILEN---DEWFP 118
             +T G  + H   ++V+ K GN+V +   GE+  RGY VMLGY+GE  K  E    D+W+ 
Sbjct:   425 ETVGRILPHTEAQIVNMKTGNLVELNTPGELFIRGYCVMLGYWGEPEKTKEAIGPDKWYR 484

Query:   119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
             +GD   + + G+ ++VGR KD+IIRGGENI P E+E     HP V+E QV GV D R+GE
Sbjct:   485 TGDIAAIDKQGFCKIVGRSKDMIIRGGENIYPAELEDFFHKHPQVLEVQVVGVKDARMGE 544

Query:   179 VVVANIELKPGASLTQDDIKTYCKGK 204
              + A I LK G   T+++IK +CKGK
Sbjct:   545 EICACIRLKKGEKTTEEEIKAFCKGK 570

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.2.1	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	204
cd05917	347	cd05917, FACL_like_2, Uncharacterized subfamily of	1e-71
PRK08315	559	PRK08315, PRK08315, AMP-binding domain protein; Va	7e-62
PRK12583	558	PRK12583, PRK12583, acyl-CoA synthetase; Provision	9e-56
COG0318	534	COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/	1e-49
cd05936	468	cd05936, FC-FACS_FadD_like, Prokaryotic long-chain	3e-48
cd04433	338	cd04433, AFD_class_I, Adenylate forming domain, Cl	9e-48
PRK07656	513	PRK07656, PRK07656, long-chain-fatty-acid--CoA lig	1e-47
cd05903	437	cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li	7e-47
cd05929	342	cd05929, BACL_like, Bacterial Bile acid CoA ligase	5e-46
cd05926	345	cd05926, FACL_fum10p_like, Subfamily of fatty acid	7e-43
cd05920	483	cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l	2e-41
cd12118	520	cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synt	5e-40
PRK06187	521	PRK06187, PRK06187, long-chain-fatty-acid--CoA lig	2e-39
PRK06839	496	PRK06839, PRK06839, acyl-CoA synthetase; Validated	3e-38
PRK08316	523	PRK08316, PRK08316, acyl-CoA synthetase; Validated	1e-36
pfam00501	412	pfam00501, AMP-binding, AMP-binding enzyme	7e-36
cd05941	430	cd05941, MCS, Malonyl-CoA synthetase (MCS)	2e-35
cd05922	350	cd05922, FACL_like_6, Uncharacterized subfamily of	9e-35
cd05911	487	cd05911, Firefly_Luc_like, Firefly luciferase of l	1e-34
PRK06087	547	PRK06087, PRK06087, short chain acyl-CoA synthetas	4e-32
cd05912	407	cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase	5e-32
PRK05677	562	PRK05677, PRK05677, long-chain-fatty-acid--CoA lig	1e-31
cd05934	421	cd05934, FACL_DitJ_like, Uncharacterized subfamily	1e-31
cd05944	359	cd05944, FACL_like_4, Uncharacterized subfamily of	2e-31
PRK08162	545	PRK08162, PRK08162, acyl-CoA synthetase; Validated	4e-31
PRK06145	497	PRK06145, PRK06145, acyl-CoA synthetase; Validated	9e-31
PRK13295	547	PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig	1e-30
PRK09088	488	PRK09088, PRK09088, acyl-CoA synthetase; Validated	2e-30
PRK07529	632	PRK07529, PRK07529, AMP-binding domain protein; Va	7e-30
PRK05605	573	PRK05605, PRK05605, long-chain-fatty-acid--CoA lig	3e-29
PRK07059	557	PRK07059, PRK07059, Long-chain-fatty-acid--CoA lig	3e-29
PRK06188	524	PRK06188, PRK06188, acyl-CoA synthetase; Validated	4e-29
PRK07786	542	PRK07786, PRK07786, long-chain-fatty-acid--CoA lig	1e-28
PRK07470	528	PRK07470, PRK07470, acyl-CoA synthetase; Validated	2e-28
PRK03640	483	PRK03640, PRK03640, O-succinylbenzoic acid--CoA li	2e-28
cd05935	430	cd05935, LC_FACS_like, Putative long-chain fatty a	1e-27
PRK12492	562	PRK12492, PRK12492, long-chain-fatty-acid--CoA lig	4e-27
cd05959	506	cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and	6e-27
PRK06155	542	PRK06155, PRK06155, crotonobetaine/carnitine-CoA l	1e-26
cd05923	495	cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)	2e-26
PRK08974	560	PRK08974, PRK08974, long-chain-fatty-acid--CoA lig	3e-26
PRK05852	534	PRK05852, PRK05852, acyl-CoA synthetase; Validated	4e-26
PRK07514	504	PRK07514, PRK07514, malonyl-CoA synthase; Validate	4e-25
PRK08751	560	PRK08751, PRK08751, putative long-chain fatty acyl	4e-25
TIGR03208	538	TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate	4e-25
PRK07788	549	PRK07788, PRK07788, acyl-CoA synthetase; Validated	2e-24
PRK08276	502	PRK08276, PRK08276, long-chain-fatty-acid--CoA lig	5e-24
PRK12406	509	PRK12406, PRK12406, long-chain-fatty-acid--CoA lig	7e-24
PRK08008	517	PRK08008, caiC, putative crotonobetaine/carnitine-	9e-24
PRK10946	536	PRK10946, entE, enterobactin synthase subunit E; P	1e-23
PLN02479	567	PLN02479, PLN02479, acetate-CoA ligase	2e-23
cd12119	517	cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synth	2e-23
PLN02860	563	PLN02860, PLN02860, o-succinylbenzoate-CoA ligase	3e-23
PRK13382	537	PRK13382, PRK13382, acyl-CoA synthetase; Provision	3e-23
COG0365	528	COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat	7e-23
PRK07798	533	PRK07798, PRK07798, acyl-CoA synthetase; Validated	8e-23
cd05904	504	cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)	9e-23
PRK06178	567	PRK06178, PRK06178, acyl-CoA synthetase; Validated	1e-22
PLN02574	560	PLN02574, PLN02574, 4-coumarate--CoA ligase-like	2e-22
TIGR01923	436	TIGR01923, menE, O-succinylbenzoate-CoA ligase	2e-22
cd05924	365	cd05924, FACL_like_5, Uncharacterized subfamily of	2e-22
cd05971	439	cd05971, MACS_like_3, Uncharacterized subfamily of	5e-22
cd05972	430	cd05972, MACS_like, Medium-chain acyl-CoA syntheta	1e-21
PRK08314	546	PRK08314, PRK08314, long-chain-fatty-acid--CoA lig	1e-21
TIGR03205	541	TIGR03205, pimA, dicarboxylate--CoA ligase PimA	8e-21
PRK06018	542	PRK06018, PRK06018, putative acyl-CoA synthetase;	9e-21
COG1022	613	COG1022, FAA1, Long-chain acyl-CoA synthetases (AM	1e-20
cd05907	456	cd05907, VL_LC_FACS_like, Long-chain fatty acid Co	6e-20
PRK06710	563	PRK06710, PRK06710, long-chain-fatty-acid--CoA lig	6e-20
COG1021	542	COG1021, EntE, Peptide arylation enzymes [Secondar	6e-20
cd05958	487	cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)	8e-20
TIGR02275	526	TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP	8e-20
PLN02330	546	PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1	1e-18
PRK13383	516	PRK13383, PRK13383, acyl-CoA synthetase; Provision	1e-18
cd05931	547	cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)	5e-18
cd05919	436	cd05919, BCL_like, Benzoate CoA ligase (BCL) and s	6e-18
cd05969	443	cd05969, MACS_like_4, Uncharacterized subfamily of	6e-18
PRK13391	511	PRK13391, PRK13391, acyl-CoA synthetase; Provision	1e-17
PRK04319	570	PRK04319, PRK04319, acetyl-CoA synthetase; Provisi	1e-17
cd05973	440	cd05973, MACS_like_2, Uncharacterized subfamily of	4e-17
PLN02246	537	PLN02246, PLN02246, 4-coumarate--CoA ligase	1e-16
PRK07008	539	PRK07008, PRK07008, long-chain-fatty-acid--CoA lig	1e-16
PRK07787	471	PRK07787, PRK07787, acyl-CoA synthetase; Validated	1e-16
PRK09192	579	PRK09192, PRK09192, acyl-CoA synthetase; Validated	1e-16
PRK07638	487	PRK07638, PRK07638, acyl-CoA synthetase; Validated	1e-16
cd05970	537	cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA s	2e-16
PRK13388	540	PRK13388, PRK13388, acyl-CoA synthetase; Provision	2e-16
PRK07867	529	PRK07867, PRK07867, acyl-CoA synthetase; Validated	2e-16
cd05928	530	cd05928, MACS_euk, Eukaryotic Medium-chain acyl-Co	3e-16
cd05940	444	cd05940, FATP_FACS, Fatty acid transport proteins	8e-16
PRK07445	452	PRK07445, PRK07445, O-succinylbenzoic acid--CoA li	8e-16
PRK07824	358	PRK07824, PRK07824, O-succinylbenzoic acid--CoA li	1e-15
PRK06164	540	PRK06164, PRK06164, acyl-CoA synthetase; Validated	1e-15
PLN03102	579	PLN03102, PLN03102, acyl-activating enzyme; Provis	3e-15
cd05915	509	cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetase	1e-14
cd05908	499	cd05908, A_NRPS_MycA_like, The adenylation domain	2e-14
cd05974	433	cd05974, MACS_like_1, Uncharacterized subfamily of	3e-14
cd05967	607	cd05967, PrpE, Propionyl-CoA synthetase (PrpE)	4e-14
cd05968	474	cd05968, AACS_like, Uncharacterized acyl-CoA synth	5e-14
PRK05851	525	PRK05851, PRK05851, long-chain-fatty-acid--[acyl-c	3e-13
PRK09029	458	PRK09029, PRK09029, O-succinylbenzoic acid--CoA li	4e-13
TIGR02188	625	TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase	5e-13
cd05909	489	cd05909, AAS_C, C-terminal domain of the acyl-acyl	7e-13
TIGR02262	508	TIGR02262, benz_CoA_lig, benzoate-CoA ligase famil	8e-13
cd05966	602	cd05966, ACS, Acetyl-CoA synthetase (also known as	1e-12
PRK13390	501	PRK13390, PRK13390, acyl-CoA synthetase; Provision	1e-12
cd05914	448	cd05914, FACL_like_3, Uncharacterized subfamily of	3e-12
cd05906	560	cd05906, A_NRPS_TubE_like, The adenylation domain	5e-12
cd05945	447	cd05945, DltA, D-alanine:D-alanyl carrier protein	7e-12
PRK05857	540	PRK05857, PRK05857, acyl-CoA synthetase; Validated	7e-12
PRK07768	545	PRK07768, PRK07768, long-chain-fatty-acid--CoA lig	3e-11
cd05933	594	cd05933, ACSBG_like, Bubblegum-like very long-chai	4e-11
cd12116	438	cd12116, A_NRPS_Ta1_like, The adenylation domain o	1e-10
cd05930	445	cd05930, A_NRPS, The adenylation domain of nonribo	2e-10
PRK00174	637	PRK00174, PRK00174, acetyl-CoA synthetase; Provisi	4e-10
cd05927	539	cd05927, LC-FACS_euk, Eukaryotic long-chain fatty	9e-10
cd12114	476	cd12114, A_NRPS_TlmIV_like, The adenylation domain	1e-09
TIGR03098	517	TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-form	1e-09
PRK08279	600	PRK08279, PRK08279, long-chain-acyl-CoA synthetase	3e-09
PRK05620	576	PRK05620, PRK05620, long-chain-fatty-acid--CoA lig	4e-09
TIGR02316	628	TIGR02316, propion_prpE, propionate--CoA ligase	1e-08
cd12117	474	cd12117, A_NRPS_Srf_like, The adenylation domain o	3e-08
COG1020	642	COG1020, EntF, Non-ribosomal peptide synthetase mo	5e-08
PRK10524	629	PRK10524, prpE, propionyl-CoA synthetase; Provisio	6e-08
cd05932	504	cd05932, LC_FACS_bac, Bacterial long-chain fatty a	2e-07
PRK08633	1146	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola	2e-07
PRK06814	1140	PRK06814, PRK06814, acylglycerophosphoethanolamine	2e-07
PRK06060	705	PRK06060, PRK06060, acyl-CoA synthetase; Validated	3e-07
PLN02736	651	PLN02736, PLN02736, long-chain acyl-CoA synthetase	3e-07
cd05937	468	cd05937, FATP_chFAT1_like, Uncharacterized subfami	5e-07
PRK07769	631	PRK07769, PRK07769, long-chain-fatty-acid--CoA lig	8e-07
PRK05850	578	PRK05850, PRK05850, acyl-CoA synthetase; Validated	9e-07
PLN02430	660	PLN02430, PLN02430, long-chain-fatty-acid-CoA liga	1e-06
cd12115	449	cd12115, A_NRPS_Sfm_like, The adenylation domain o	4e-06
PLN02654	666	PLN02654, PLN02654, acetate-CoA ligase	6e-06
PLN02387	696	PLN02387, PLN02387, long-chain-fatty-acid-CoA liga	1e-05
PRK08308	414	PRK08308, PRK08308, acyl-CoA synthetase; Validated	1e-05
cd05910	455	cd05910, FACL_like_1, Uncharacterized subfamily of	1e-05
PLN02861	660	PLN02861, PLN02861, long-chain-fatty-acid-CoA liga	3e-05
TIGR01733	409	TIGR01733, AA-adenyl-dom, amino acid adenylation d	4e-05
PRK12476	612	PRK12476, PRK12476, putative fatty-acid--CoA ligas	7e-05
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	7e-05
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	2e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	3e-04
cd05918	447	cd05918, A_NRPS_SidN3_like, The adenylation (A) do	5e-04
PTZ00216	700	PTZ00216, PTZ00216, acyl-CoA synthetase; Provision	6e-04
PTZ00237	647	PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisi	8e-04
PRK08043	718	PRK08043, PRK08043, bifunctional acyl-[acyl carrie	8e-04
PRK12316	5163	PRK12316, PRK12316, peptide synthase; Provisional	0.001
PRK05691	4334	PRK05691, PRK05691, peptide synthase; Validated	0.003
PRK10252	1296	PRK10252, entF, enterobactin synthase subunit F; P	0.003
COG1541	438	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme	0.003
PLN02614	666	PLN02614, PLN02614, long-chain acyl-CoA synthetase	0.004
cd05939	474	cd05939, hsFATP4_like, Fatty acid transport protei	0.004

>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  220 bits (563), Expect = 1e-71
 Identities = 95/239 (39%), Positives = 130/239 (54%), Gaps = 48/239 (20%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEE-LSSPVIALTAGAPCSPTLFNKIR 64
           I +E+ T L+G PTM++ L+        E P+  +  LSS    ++ GAP  P L  +IR
Sbjct: 87  IERERITALHGVPTMFIALL--------EHPDFDKFDLSSLRTGISGGAPVPPELVRRIR 138

Query: 65  DTFGIKHLI------------------------------------VKVVDKKGNIVPMGM 88
           + F +  +                                     VK+VD  G  VP G 
Sbjct: 139 EEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTVGRPLPGVEVKIVDPDGGEVPPGE 198

Query: 89  CGEVCYRGYNVMLGYYG---EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGG 145
            GE+C RGY+VM GYY       + ++ D W  +GD   + E+GY ++VGRIKD+IIRGG
Sbjct: 199 VGEICVRGYSVMKGYYNDPEATAEAIDADGWLHTGDLGYMDEDGYLRIVGRIKDMIIRGG 258

Query: 146 ENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           ENI P EIE  L THP V EA V GVPDERLGEVV A + LKPGA+LT++++  +C+G+
Sbjct: 259 ENIYPAEIEEALLTHPAVAEAAVVGVPDERLGEVVAAFVVLKPGATLTEEELIAFCRGR 317

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347

>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated

 Score =  200 bits (512), Expect = 7e-62
 Identities = 97/238 (40%), Positives = 131/238 (55%), Gaps = 49/238 (20%)

Query: 8   KEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAPC----------- 55
           +E+CT LYG PTM+      I  L  + P+ A  +LSS    + AG+PC           
Sbjct: 287 EERCTALYGVPTMF------IAEL--DHPDFARFDLSSLRTGIMAGSPCPIEVMKRVIDK 338

Query: 56  ---------------SPTLFNKIRD--------TFG--IKHLIVKVVD-KKGNIVPMGMC 89
                          SP       D        T G  + HL VK+VD + G  VP G  
Sbjct: 339 MHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQ 398

Query: 90  GEVCYRGYNVMLGYYGEENK---ILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
           GE+C RGY+VM GY+ +  K    ++ D W  +GD  ++ E GY  +VGRIKD+IIRGGE
Sbjct: 399 GELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGDLAVMDEEGYVNIVGRIKDMIIRGGE 458

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           NI P+EIE  L THP + + QV GVPDE+ GE V A I L+PGA+LT++D++ +C+GK
Sbjct: 459 NIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVRDFCRGK 516

Length = 559

>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional

 Score =  184 bits (470), Expect = 9e-56
 Identities = 89/241 (36%), Positives = 125/241 (51%), Gaps = 48/241 (19%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAPCSPTLFNK 62
           + + +E+CT LYG PTM+   I+ +     + P     +LSS    + AGAPC   +  +
Sbjct: 285 QAVEEERCTALYGVPTMF---IAEL-----DHPQRGNFDLSSLRTGIMAGAPCPIEVMRR 336

Query: 63  IRD----------------------------------TFG--IKHLIVKVVDKKGNIVPM 86
           + D                                  T G    HL VKVVD  G  VP 
Sbjct: 337 VMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATVPR 396

Query: 87  GMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIIIR 143
           G  GE+C RGY+VM GY+       E    D W  +GD   + E GY ++VGR KD+IIR
Sbjct: 397 GEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDLATMDEQGYVRIVGRSKDMIIR 456

Query: 144 GGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG 203
           GGENI P+EIE  L THP V + QV+GVPDE+ GE +VA + L PG + ++++++ +CK 
Sbjct: 457 GGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREFCKA 516

Query: 204 K 204
           +
Sbjct: 517 R 517

Length = 558

>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

 Score =  168 bits (427), Expect = 1e-49
 Identities = 86/240 (35%), Positives = 120/240 (50%), Gaps = 48/240 (20%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPV-IALTAGAPCSPTLFNKIR 64
           I K K TVL G PT   +L+ + +          ++LSS + + L+ GAP  P L  +  
Sbjct: 260 IEKYKVTVLSGVPTFLRELLDNPEK-------DDDDLSSSLRLVLSGGAPLPPELLERFE 312

Query: 65  DTFGIKHLI-----------------------------------VKVVDKKGNIVPMGMC 89
           + FG   ++                                   V++VD  G  V  G  
Sbjct: 313 ERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLPGEV 372

Query: 90  GEVCYRGYNVMLGYYG--EEN-KILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
           GE+  RG NVM GY+   E   +  + D W  +GD   + E+GY  +VGR+KD+II GGE
Sbjct: 373 GEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGDLGYVDEDGYLYIVGRLKDLIISGGE 432

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG--ASLTQDDIKTYCKGK 204
           NI P+EIE VL  HP V EA V GVPDER GE VVA + LKPG  A LT ++++ + + +
Sbjct: 433 NIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRAFLRKR 492

Length = 534

>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD

 Score =  163 bits (414), Expect = 3e-48
 Identities = 80/234 (34%), Positives = 115/234 (49%), Gaps = 44/234 (18%)

Query: 5   HIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAP--------- 54
            I + + T+  G PT+Y  L+          P   + + SS  + ++ GAP         
Sbjct: 211 EIKRYRFTIFPGVPTLYNALL--------NHPEFKKYDFSSLRLCISGGAPLPVEVAERF 262

Query: 55  ----------------CSP-TLFNKIRD-----TFG--IKHLIVKVVDKKGNIVPMGMCG 90
                            SP T  N +       + G  +    VK+VD +GN +P G  G
Sbjct: 263 EEKTGAPLVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGTEVKIVDDEGNELPPGEVG 322

Query: 91  EVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENI 148
           E+  RG  VM GY+   EE   +  D W  +GD   + E+GY  +V R KD+II GG N+
Sbjct: 323 ELVVRGPQVMKGYWNRPEETAEVLTDGWLRTGDIGYMDEDGYFYIVDRKKDMIIVGGFNV 382

Query: 149 IPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
            P+EIE VL +HP V+EA V GVPD   GE V A + LK GASLT++++  +C+
Sbjct: 383 YPREIEEVLYSHPAVLEAAVVGVPDPYRGEAVKAFVVLKEGASLTEEELIAFCR 436

This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468

>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I

 Score =  158 bits (403), Expect = 9e-48
 Identities = 76/235 (32%), Positives = 109/235 (46%), Gaps = 43/235 (18%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKI 63
             I + + TVL+G PT+Y  L  + +    +       LSS  + ++ G P SP L  + 
Sbjct: 84  ELIEQYRVTVLFGVPTLYDALAKAAEDRGYD-------LSSLRLLISGGEPLSPELLERF 136

Query: 64  RDTFGIKHLI---------------------------------VKVVDKKGNIVPMGMCG 90
            +  G   L                                  V+VVD++G  +P G  G
Sbjct: 137 EERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGVEVRVVDEEGKPLPPGEVG 196

Query: 91  EVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
           E+  RG  VM GY+    +       D W+ +GD   L E GY  + GR KD+I  GGEN
Sbjct: 197 ELVVRGPWVMKGYWNNPPETTAAATEDGWYRTGDLGYLDEEGYLYITGRSKDLIKVGGEN 256

Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
           + P E+E VL  HP V EA V GVPDE  GE +VA + L+PGA    +++K + +
Sbjct: 257 VYPAEVESVLLQHPAVAEAAVVGVPDEDRGERIVAFVVLRPGADALAEELKAHLR 311

This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338

>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated

 Score =  162 bits (412), Expect = 1e-47
 Identities = 85/237 (35%), Positives = 111/237 (46%), Gaps = 48/237 (20%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEE-LSSPVIALTAGAPCSPTLFNKIR 64
           I  E+ TVL G PTMY  L+          P+ + E LSS  +A+T  A     L  +  
Sbjct: 251 IETERITVLPGPPTMYNSLLQH--------PDRSAEDLSSLRLAVTGAASMPVALLERFE 302

Query: 65  DTFG------------------------------------IKHLIVKVVDKKGNIVPMGM 88
              G                                    I  +  K+V++ G  VP+G 
Sbjct: 303 SELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGE 362

Query: 89  CGEVCYRGYNVMLGYYG---EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGG 145
            GE+  RG NVM GYY         ++ D W  +GD   L E GY  +V R KD+ I GG
Sbjct: 363 VGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDLGRLDEEGYLYIVDRKKDMFIVGG 422

Query: 146 ENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
            N+ P E+E VL  HP V EA V GVPDERLGEV  A + LKPGA LT++++  YC+
Sbjct: 423 FNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAYCR 479

Length = 513

>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)

 Score =  159 bits (404), Expect = 7e-47
 Identities = 76/239 (31%), Positives = 102/239 (42%), Gaps = 51/239 (21%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           I +   T   G      DL+++             +L S  + L  GAP    L  +  +
Sbjct: 178 IREHGVTFTMGATPFLADLLAAAD-------AAGPDLPSLRVFLCGGAPVPRELARRAAE 230

Query: 66  TFGIK----------HLI------------------------VKVVDKKGNIVPMGMCGE 91
             G K           L+                        V++VD  GN VP G  GE
Sbjct: 231 ALGAKVVRAYGMTEVPLVTVGTPDDPDDKRAATDGRPVPGVEVRIVDDDGNDVPPGEEGE 290

Query: 92  VCYRGYNVMLGYYGEENKILENDE------WFPSGDFFILHENGYGQVVGRIKDIIIRGG 145
           +  RG  + LGY        +N E      WF +GD   L  +GY ++ GR KDIIIRGG
Sbjct: 291 LQVRGPQLFLGYLDPP----DNTEAFTDDGWFRTGDLGRLDADGYLRITGRKKDIIIRGG 346

Query: 146 ENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           ENI  +EIE +L  HP V E  V  +PDERLGE V A +   PGASLT  ++  +   +
Sbjct: 347 ENISAREIEDLLLRHPAVAEVAVVAMPDERLGERVCAVVVPAPGASLTLAELTEHLAAQ 405

Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437

>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins

 Score =  154 bits (392), Expect = 5e-46
 Identities = 75/238 (31%), Positives = 108/238 (45%), Gaps = 45/238 (18%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEE-LSSPVIALTAGAPCSPTLFNK 62
             I + + T  +  PTM+  L+         +P+ A   LSS  + +   AP    L   
Sbjct: 83  DLIERHRVTHTFLVPTMFQRLL--------RLPDFARYDLSSLRLIIYGAAPMPAELKRA 134

Query: 63  IRDTFGIK----------------------------------HLIVKVVDKKGNIVPMGM 88
           + + FG                                     + V++VD+ G  +P G 
Sbjct: 135 MIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPGVEVRIVDEDGRELPPGE 194

Query: 89  CGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
            GE+  RG  VM GY+       E   D W  +GD   L E+GY  +V R KD+II GGE
Sbjct: 195 VGEIVVRGPAVMAGYWNRPEATAEALRDGWLHTGDLGYLDEDGYLYIVDRKKDMIISGGE 254

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           NI P E+E VL  HP V +  V GVPDE  GE VVA + L+PGA+L  +++  +C+ +
Sbjct: 255 NIYPAEVENVLLAHPAVADVAVIGVPDEEWGEAVVAVVVLRPGATLDAEELIAFCRER 312

Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342

>gnl|CDD|213292 cd05926, FACL_fum10p_like, Subfamily of fatty acid CoA ligase (FACL) similar to Fum10p of Gibberella moniliformis

 Score =  146 bits (371), Expect = 7e-43
 Identities = 72/232 (31%), Positives = 104/232 (44%), Gaps = 41/232 (17%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           I K + T     PT++  L      L    PN  +         +A AP  P + +++  
Sbjct: 87  IAKYRVTWYSAVPTIHQIL------LKTAKPNPGKPPPRLRFIRSASAPLPPAVLDRLEK 140

Query: 66  TFGIK-----------HLI----------------------VKVVDKKGNIVPMGMCGEV 92
            FG+            H I                      V ++D  G  +P G  GE+
Sbjct: 141 RFGVPVLEAYGMTEAAHQIASNPLPPLVRKPGSVGRPAGVEVAILDDDGRPLPPGQEGEI 200

Query: 93  CYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIP 150
             RG NV  GY        E   D WF +GD   L E+GY  + GRIK++I RGGE I P
Sbjct: 201 VIRGPNVTAGYLNNPEANREAFRDGWFRTGDLGYLDEDGYLFLTGRIKELINRGGEKISP 260

Query: 151 KEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
           +E+E VL  HP V EA V+GVPDE  GE V A + L+  + +T ++++ + +
Sbjct: 261 REVEEVLLRHPAVAEAVVFGVPDELYGEEVAAAVVLRADSKVTIEELRDFAR 312

FACL catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Fum10p is a fatty acid CoA ligase involved in the synthesis of fumonisin, a polyketide mycotoxin, in Gibberella moniliformis. Length = 345

>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase

 Score =  145 bits (368), Expect = 2e-41
 Identities = 54/134 (40%), Positives = 82/134 (61%), Gaps = 3/134 (2%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG--EENK-ILENDEWFPSGDFFILHENGY 130
           +++VD +G  VP G  GE+  RG   + GYY   E N     +D ++ +GD   +  +GY
Sbjct: 320 IRIVDDQGEPVPPGEVGELLTRGPYTIRGYYRAPEHNARAFTDDGFYRTGDLVRIDADGY 379

Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA 190
            +VVGRIKD I RGGE I P+EIE +L +HP V +A V G+PDE LGE + A +  + GA
Sbjct: 380 YRVVGRIKDQINRGGEKISPEEIENLLLSHPAVADAAVVGMPDEVLGERICAFVVPRGGA 439

Query: 191 SLTQDDIKTYCKGK 204
           + T  +++ + + +
Sbjct: 440 APTLAELRAFLREQ 453

2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483

>gnl|CDD|213326 cd12118, ttLC_FACS_AEE21_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles and Arabidopsis

 Score =  142 bits (360), Expect = 5e-40
 Identities = 82/254 (32%), Positives = 111/254 (43%), Gaps = 61/254 (24%)

Query: 2   ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFN 61
           I   I K K T L G PT+   L ++              L  PV  +TAGAP  P +  
Sbjct: 247 IYDLIEKHKVTHLCGAPTVLNMLANA-------PEADKLPLPRPVRVMTAGAPPPPAVIK 299

Query: 62  KIRDTF----------------------------------------GIKHL---IVKVVD 78
           K+ +                                          G++++    V VVD
Sbjct: 300 KMEELGFEVTHVYGLTETYGPITVCEWKPEWDALPAEERARLKARQGVRYVGLEEVDVVD 359

Query: 79  KKGNI-VP-----MGMCGEVCYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGY 130
            +    VP     +G   E+  RG  VM GYY       E     WF SGD  ++H +GY
Sbjct: 360 PETMKDVPRDGKTIG---EIVMRGNTVMKGYYKNPEATEEAFAGGWFHSGDLAVVHPDGY 416

Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA 190
            ++  R KDIII GGENI   E+E VL  HP V+EA V   PDE+ GE   A + LKPGA
Sbjct: 417 IEIKDRSKDIIISGGENISSIEVEGVLYKHPAVLEAAVVARPDEKWGETPCAFVVLKPGA 476

Query: 191 SLTQDDIKTYCKGK 204
           S+T++++  YC+ K
Sbjct: 477 SVTEEELIEYCREK 490

This family includes fatty acyl-CoA synthetases that can activate medium to long-chain fatty acids. These enzymes catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid. Also included in this family are acyl activating enzymes from Arabidopsis, which contains a large number of proteins from this family with up to 63 different genes, many of which are uncharacterized. Length = 520

>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated

 Score =  140 bits (356), Expect = 2e-39
 Identities = 71/242 (29%), Positives = 109/242 (45%), Gaps = 51/242 (21%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           I  E+ T  +  PT++  L+    P    +     + SS  + +  GA   P L  + ++
Sbjct: 251 IETERVTFFFAVPTIWQMLLK--APRAYFV-----DFSSLRLVIYGGAALPPALLREFKE 303

Query: 66  TFGIK---------------------HLI-----------------VKVVDKKGNIVPM- 86
            FGI                       L                   ++VD  G+ +P  
Sbjct: 304 KFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPD 363

Query: 87  -GMCGEVCYRGYNVMLGYYGEEN---KILENDEWFPSGDFFILHENGYGQVVGRIKDIII 142
            G  GE+  RG  +M GY+       + ++   W  +GD   + E+GY  +  RIKD+II
Sbjct: 364 GGEVGEIIVRGPWLMQGYWNRPEATAETIDGG-WLHTGDVGYIDEDGYLYITDRIKDVII 422

Query: 143 RGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
            GGENI P+E+E  L  HP V E  V GVPDE+ GE  VA + LKPGA+L   +++ + +
Sbjct: 423 SGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRAFLR 482

Query: 203 GK 204
           G+
Sbjct: 483 GR 484

Length = 521

>gnl|CDD|168698 PRK06839, PRK06839, acyl-CoA synthetase; Validated

 Score =  137 bits (346), Expect = 3e-38
 Identities = 69/234 (29%), Positives = 101/234 (43%), Gaps = 42/234 (17%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPC-------- 55
             I K K TV+ G PT++  LI+  +  T         L S       GAPC        
Sbjct: 232 SMIEKHKVTVVMGVPTIHQALINCSKFET-------TNLQSVRWFYNGGAPCPEELMREF 284

Query: 56  ----------------SPTLFNKIRDTFGIK---------HLIVKVVDKKGNIVPMGMCG 90
                           SPT+F    +    K             +++D+  N V +G  G
Sbjct: 285 IDRGFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVG 344

Query: 91  EVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENI 148
           E+  RG NVM  Y+   +   E   D W  +GD   + E+G+  +VGR K++II GGENI
Sbjct: 345 ELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVDEDGFVYIVGRKKEMIISGGENI 404

Query: 149 IPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
            P E+E V+    DV E  V G    + GE+ +A I  K  + L + D+  +C+
Sbjct: 405 YPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCR 458

Length = 496

>gnl|CDD|181381 PRK08316, PRK08316, acyl-CoA synthetase; Validated

 Score =  133 bits (337), Expect = 1e-36
 Identities = 55/132 (41%), Positives = 78/132 (59%), Gaps = 2/132 (1%)

Query: 75  KVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQ 132
           +VVD  GN V  G  GE+ +R   +MLGY+ +  K  E     WF SGD  ++ E GY  
Sbjct: 353 RVVDDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGVMDEEGYIT 412

Query: 133 VVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASL 192
           VV R KD+I  GGEN+  +E+E  L THP V E  V G+PD +  E V A +  K GA++
Sbjct: 413 VVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATV 472

Query: 193 TQDDIKTYCKGK 204
           T+D++  +C+ +
Sbjct: 473 TEDELIAHCRAR 484

Length = 523

>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme

 Score =  129 bits (326), Expect = 7e-36
 Identities = 64/203 (31%), Positives = 86/203 (42%), Gaps = 47/203 (23%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           I K K TVLYG PT+        + L +       +LSS  + L+ G P  P L  ++R+
Sbjct: 217 IEKYKVTVLYGVPTLL-------RLLLKAPEEKKYDLSSLRLVLSGGEPLPPELLRRLRE 269

Query: 66  TFGIKHLI-----------------------------------VKVVDKKGNIVPMGMCG 90
            FG   L+                                   VKV+D++G  VP G  G
Sbjct: 270 RFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIGRPLPGVEVKVLDEEGEPVPPGEVG 329

Query: 91  EVCYRGYNVMLGYYGEE---NKILENDEWFP--SGDFFILHENGYGQVVGRIKDIIIRGG 145
           E+C RG  V  GY  +     +    D W    +GD     E+GY +++GR  D +   G
Sbjct: 330 ELCIRGPGVARGYLNDPELTAERFVEDGWGMYRTGDLGRWDEDGYLEILGRKDDQVKIRG 389

Query: 146 ENIIPKEIEYVLQTHPDVVEAQV 168
           E I P EIE VL  HP V EA V
Sbjct: 390 ERIEPGEIEAVLLEHPGVAEAAV 412

Length = 412

>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)

 Score =  128 bits (324), Expect = 2e-35
 Identities = 63/233 (27%), Positives = 97/233 (41%), Gaps = 45/233 (19%)

Query: 11  CTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK 70
            TV  G PT+Y  L+       E     A    +  + ++  A     +  +  +  G  
Sbjct: 178 ITVFMGVPTIYTRLLEHY----EFDDAAAAAARNLRLFVSGSAALPVPVLERWEERTG-- 231

Query: 71  HLI----------------------------------VKVVDKKGN-IVPMGMCGEVCYR 95
           H +                                  V++VD+ G   +  G  GE+  R
Sbjct: 232 HTLLERYGMTETGMALSNPLDGERRPGTVGLPLPGVEVRIVDEDGGEPLAAGEVGEIQVR 291

Query: 96  GYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIIIR-GGENIIPK 151
           G NV   Y+ +     E    D WF +GD  ++ E+GY +++GR  D II+ GG  +   
Sbjct: 292 GPNVFSEYWNKPEATAEAFTEDGWFKTGDVGVVDEDGYYRILGRKSDDIIKSGGYKVSAL 351

Query: 152 EIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           EIE  L  HP V E  V GVPD   GE VVA +  + GA+LT  +++ + + K
Sbjct: 352 EIEEALLEHPGVAEVAVIGVPDPDWGEAVVAVVVPEAGAALTLAELRAWAREK 404

MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430

>gnl|CDD|213289 cd05922, FACL_like_6, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  125 bits (316), Expect = 9e-35
 Identities = 69/234 (29%), Positives = 102/234 (43%), Gaps = 35/234 (14%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNI------AEELSSPVIA--------- 48
           +H+ KE+ T   G PT +  L+       E+ P++         L +  I          
Sbjct: 85  KHLAKERITGFAGVPTTWAQLLRLDPLAREDFPSLRYLTNAGGALPAKTILQLRRAFPDA 144

Query: 49  -------LTAGAPCS---PTLFNKIRDTFG--IKHLIVKVVDKKGNIVPMGMCGEVCYRG 96
                  LT     +   P   ++  D+ G  I ++ + VVD+ GN    G  GE+ +RG
Sbjct: 145 KLFSMYGLTEAFRSTYLPPEELDRRPDSIGKAIPNVELWVVDEDGNRCAPGEVGELVHRG 204

Query: 97  YNVMLGYYG--EENK-----ILENDE-WFPSGDFFILHENGYGQVVGRIKDIIIRGGENI 148
            NVM GY+   E             E    +GD   + E GY   VGR  D+I   G  +
Sbjct: 205 ANVMKGYWNDPEATAERLRPGPLPGEIVLYTGDLVRMDEEGYLYFVGRKDDMIKTRGYRV 264

Query: 149 IPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
            P EIE V+  HP V EA V GVPD  LG+ +VA +    G SL + ++  +C+
Sbjct: 265 SPTEIEEVICAHPLVAEAAVIGVPDPLLGQAIVAVVVSADGESLDEKELLKHCR 318

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 350

>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)

 Score =  126 bits (320), Expect = 1e-34
 Identities = 69/238 (28%), Positives = 104/238 (43%), Gaps = 44/238 (18%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKI 63
           + I K K T L+  P + V L  S  PL ++      +LSS  +  +  AP S  L  ++
Sbjct: 231 KLIEKYKVTSLFLVPPIAVALAKS--PLVDK-----YDLSSLRVIFSGAAPLSKELQEEL 283

Query: 64  RDTFGIKHLI---------------------------------VKVVDKKGN-IVPMGMC 89
           R  F    +                                   K+VD+ G   +     
Sbjct: 284 RKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPNVEAKIVDEDGGKSLGPNER 343

Query: 90  GEVCYRGYNVMLGYYG--EENKILENDE-WFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
           GE+C +G  +M GY    E  K   +++ W  +GD     E+G   +V R K++I   G 
Sbjct: 344 GELCVKGPQIMKGYLNNPEATKETIDEDGWLHTGDIGYFDEDGNFYIVDRKKELIKYKGY 403

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
            + P E+E VL  HP V +A V G+PDE  GE+  A + LKPG+ LT+ ++K Y   K
Sbjct: 404 QVPPAELEAVLLEHPKVADAAVIGIPDEVAGELPRAYVVLKPGSKLTEQEVKDYVAKK 461

This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487

>gnl|CDD|180393 PRK06087, PRK06087, short chain acyl-CoA synthetase; Reviewed

 Score =  121 bits (304), Expect = 4e-32
 Identities = 56/131 (42%), Positives = 79/131 (60%), Gaps = 4/131 (3%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEE---NKILENDEWFPSGDFFILHENGY 130
           +KVVD+    +P G  GE   RG NV +GY  E     + L+ + W+ SGD   + E GY
Sbjct: 366 IKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCRMDEAGY 425

Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK-PG 189
            ++ GR KDII+RGGENI  +E+E +L  HP + +A V  +PDERLGE   A + LK P 
Sbjct: 426 IKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPH 485

Query: 190 ASLTQDDIKTY 200
            SLT +++  +
Sbjct: 486 HSLTLEEVVAF 496

Length = 547

>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)

 Score =  119 bits (300), Expect = 5e-32
 Identities = 47/117 (40%), Positives = 66/117 (56%), Gaps = 3/117 (2%)

Query: 90  GEVCYRGYNVMLGYYGEE--NKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
           GE+  RG ++ LGY  +      L+ D WF +GD   L   GY  V+GR  D+II GGEN
Sbjct: 261 GEILVRGPSLFLGYLPQGGLTPPLDEDGWFHTGDLGYLDAEGYLYVLGRRDDLIISGGEN 320

Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           I P+EIE VL  HP V EA V GVPD+  G+  VA +       ++ ++++ +   K
Sbjct: 321 IYPEEIEAVLLQHPAVEEAAVVGVPDDEWGQRPVAFVVPN-DDPVSVEELQAFLADK 376

O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407

>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated

 Score =  120 bits (302), Expect = 1e-31
 Identities = 50/133 (37%), Positives = 83/133 (62%), Gaps = 3/133 (2%)

Query: 73  IVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYY---GEENKILENDEWFPSGDFFILHENG 129
           + KV+D  GN +P+G  GE+C +G  VM GY+      ++IL++D W  +GD  ++ E+G
Sbjct: 388 LCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQEDG 447

Query: 130 YGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
           Y ++V R KD+I+  G N+ P E+E VL   P V++    GVPDE+ GE +   + +KPG
Sbjct: 448 YMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPG 507

Query: 190 ASLTQDDIKTYCK 202
            +LT++ +  + +
Sbjct: 508 ETLTKEQVMEHMR 520

Length = 562

>gnl|CDD|213300 cd05934, FACL_DitJ_like, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  118 bits (297), Expect = 1e-31
 Identities = 56/170 (32%), Positives = 79/170 (46%), Gaps = 14/170 (8%)

Query: 41  ELSSPVIA-LTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYR---G 96
           E   P+IA      P S     + R         V++VD+ G  VP G  GE+  R    
Sbjct: 230 ETGVPIIAPGDPAPPGS---CGRPRPGVE-----VRIVDEDGREVPPGEVGELVVRPRRP 281

Query: 97  YNVMLGYYG--EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIE 154
           + +  GYYG  E       + WF +GD     E+G+   V R KD I R GENI   E+E
Sbjct: 282 WAMFKGYYGMPEATAKAWRNGWFHTGDRGRRDEDGFLYFVDRKKDAIRRRGENISSYEVE 341

Query: 155 YVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
             +  HP V EA V  VP E   + V A + L+PG +L  + +  +C+ +
Sbjct: 342 AAILAHPAVAEAAVVAVPSELGEDEVKAVVVLRPGETLDPEALLEFCRDR 391

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Members of this family include DitJ from Pseudomonas and similar proteins. Length = 421

>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score =  117 bits (294), Expect = 2e-31
 Identities = 63/233 (27%), Positives = 94/233 (40%), Gaps = 48/233 (20%)

Query: 10  KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI 69
           + T+L   PT+   L+        ++P    ++SS   ALT  AP    +  +     G+
Sbjct: 97  RVTLLSAVPTVLAALL--------QVPLGDADISSLRYALTGAAPLPVEVARRFEAVTGV 148

Query: 70  K---------------------------------HLIVKVVDKKGNIVPMGMC-----GE 91
                                             +  V+V            C     G 
Sbjct: 149 PVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYTRVRVAKLDAGGALGRDCAPGEVGV 208

Query: 92  VCYRGYNVMLGYY-GEENKILENDE-WFPSGDFFILHENGYGQVVGRIKDIIIRGGENII 149
           +  RG NV  GY     N     ++ W  +GD   +  +GY  + GR KD+IIRGG NI 
Sbjct: 209 LAIRGPNVFPGYLNDAHNAGARLEDGWLNTGDLGRIDADGYLWLTGRAKDLIIRGGHNID 268

Query: 150 PKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
           P+ IE  L  HP V  A   G PD   GE+ VA ++LKPGA++T+ ++  + K
Sbjct: 269 PQMIEEALLRHPAVALAAAVGRPDAYAGELPVAYVQLKPGATVTEGELLAFVK 321

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359

>gnl|CDD|236169 PRK08162, PRK08162, acyl-CoA synthetase; Validated

 Score =  118 bits (297), Expect = 4e-31
 Identities = 52/115 (45%), Positives = 68/115 (59%), Gaps = 2/115 (1%)

Query: 90  GEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
           GE+ +RG  VM GY        E     WF +GD  +LH +GY ++  R KDIII GGEN
Sbjct: 389 GEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGEN 448

Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
           I   E+E VL  HP V+ A V   PD + GEV  A +ELK GAS T+++I  +C+
Sbjct: 449 ISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASATEEEIIAHCR 503

Length = 545

>gnl|CDD|102207 PRK06145, PRK06145, acyl-CoA synthetase; Validated

 Score =  116 bits (293), Expect = 9e-31
 Identities = 55/138 (39%), Positives = 80/138 (57%), Gaps = 2/138 (1%)

Query: 69  IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILH 126
           + H+ +++ D  G  +P  M GE+C RG  V  GY+ +  K  E    +WF SGD   L 
Sbjct: 325 LAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGYLD 384

Query: 127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL 186
           E G+  +  R KD+II GGENI   E+E V+   P+V EA V GV D+R GE + A + L
Sbjct: 385 EEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVL 444

Query: 187 KPGASLTQDDIKTYCKGK 204
            PGA+LT + +  +C+ +
Sbjct: 445 NPGATLTLEALDRHCRQR 462

Length = 497

>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed

 Score =  117 bits (294), Expect = 1e-30
 Identities = 49/132 (37%), Positives = 72/132 (54%), Gaps = 1/132 (0%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDE-WFPSGDFFILHENGYGQ 132
           V+VVD  G  +P G  G +  RG +   GY         + + WF +GD   +  +GY +
Sbjct: 377 VRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTDADGWFDTGDLARIDADGYIR 436

Query: 133 VVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASL 192
           + GR KD+IIRGGENI   EIE +L  HP + +  +   PDERLGE   A +  +PG SL
Sbjct: 437 ISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSL 496

Query: 193 TQDDIKTYCKGK 204
             +++  + K +
Sbjct: 497 DFEEMVEFLKAQ 508

Length = 547

>gnl|CDD|181644 PRK09088, PRK09088, acyl-CoA synthetase; Validated

 Score =  116 bits (291), Expect = 2e-30
 Identities = 57/164 (34%), Positives = 79/164 (48%), Gaps = 18/164 (10%)

Query: 46  VIALTAGAP--CSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGY 103
           VI   AGA    +PT+               +VVD +GN  P G+ GE+  RG N+  GY
Sbjct: 300 VIRAKAGAAGIPTPTVQ-------------TRVVDDQGNDCPAGVPGELLLRGPNLSPGY 346

Query: 104 YG---EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTH 160
           +       +    D WF +GD      +G+  VV R KD+ I GGEN+ P EIE VL  H
Sbjct: 347 WRRPQATARAFTGDGWFRTGDIARRDADGFFWVVDRKKDMFISGGENVYPAEIEAVLADH 406

Query: 161 PDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           P + E  V G+ D + GEV    I    GA L  + I+++   +
Sbjct: 407 PGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLSTR 450

Length = 488

>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated

 Score =  115 bits (289), Expect = 7e-30
 Identities = 66/233 (28%), Positives = 98/233 (42%), Gaps = 48/233 (20%)

Query: 10  KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI 69
           +   L G PT+Y  L+        ++P    ++SS   AL   AP    +F +     G+
Sbjct: 308 RINFLSGVPTVYAALL--------QVPVDGHDISSLRYALCGAAPLPVEVFRRFEAATGV 359

Query: 70  K-----------------------------------HLIVKVVDKKGNIV---PMGMCGE 91
           +                                    + V ++D  G  +    +   G 
Sbjct: 360 RIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGV 419

Query: 92  VCYRGYNVMLGYY-GEENKILENDE-WFPSGDFFILHENGYGQVVGRIKDIIIRGGENII 149
           +C  G NV  GY     NK L  ++ W  +GD   +  +GY  + GR KD+IIRGG NI 
Sbjct: 420 LCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGDLGRIDADGYFWLTGRAKDLIIRGGHNID 479

Query: 150 PKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
           P  IE  L  HP V  A   G PD   GE+ VA ++LKPGAS T+ ++  + +
Sbjct: 480 PAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFAR 532

Length = 632

>gnl|CDD|235531 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated

 Score =  113 bits (284), Expect = 3e-29
 Identities = 54/136 (39%), Positives = 81/136 (59%), Gaps = 4/136 (2%)

Query: 73  IVKVVDKK--GNIVPMGMCGEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHEN 128
            V++VD +     +P G  GE+  RG  V  GY+   EE      D WF +GD  ++ E+
Sbjct: 399 EVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVVMEED 458

Query: 129 GYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKP 188
           G+ ++V RIK++II GG N+ P E+E VL+ HP V +A V G+P E   E VVA + L+P
Sbjct: 459 GFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEP 518

Query: 189 GASLTQDDIKTYCKGK 204
           GA+L  + ++ YC+  
Sbjct: 519 GAALDPEGLRAYCREH 534

Length = 573

>gnl|CDD|235923 PRK07059, PRK07059, Long-chain-fatty-acid--CoA ligase; Validated

 Score =  113 bits (284), Expect = 3e-29
 Identities = 63/165 (38%), Positives = 93/165 (56%), Gaps = 12/165 (7%)

Query: 43  SSPVIALTAGAPCSPTLFNKIRDTFG--IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVM 100
           +SPV      A C+P    +   T G  +    V + D  GN +P+G  GE+C RG  VM
Sbjct: 364 TSPV------ATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGPQVM 417

Query: 101 LGYYG---EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVL 157
            GY+    E  K++  D +F +GD  ++ E GY ++V R KD+I+  G N+ P EIE V+
Sbjct: 418 AGYWNRPDETAKVMTADGFFRTGDVGVMDERGYTKIVDRKKDMILVSGFNVYPNEIEEVV 477

Query: 158 QTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
            +HP V+E    GVPDE  GE V   + +K   +LT++D+K +CK
Sbjct: 478 ASHPGVLEVAAVGVPDEHSGEAVKLFV-VKKDPALTEEDVKAFCK 521

Length = 557

>gnl|CDD|235731 PRK06188, PRK06188, acyl-CoA synthetase; Validated

 Score =  112 bits (283), Expect = 4e-29
 Identities = 52/126 (41%), Positives = 74/126 (58%), Gaps = 2/126 (1%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYG 131
           V ++D+ G  V  G  GE+C RG  VM GY+   EE      D W  +GD     E+G+ 
Sbjct: 350 VALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGDVAREDEDGFY 409

Query: 132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS 191
            +V R KD+I+ GG N+ P+E+E VL  HP V +  V GVPDE+ GE V A + L+PGA+
Sbjct: 410 YIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAA 469

Query: 192 LTQDDI 197
           +   ++
Sbjct: 470 VDAAEL 475

Length = 524

>gnl|CDD|169098 PRK07786, PRK07786, long-chain-fatty-acid--CoA ligase; Validated

 Score =  111 bits (280), Expect = 1e-28
 Identities = 57/134 (42%), Positives = 75/134 (55%), Gaps = 3/134 (2%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDE--WFPSGDFFILHENGYG 131
            +VVD+  N VP+G  GE+ YR   +M GY+       E     WF SGD     E GY 
Sbjct: 356 ARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVRQDEEGYV 415

Query: 132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG-A 190
            VV R KD+II GGENI   E+E VL +HPD+VE  V G  DE+ GEV VA   ++   A
Sbjct: 416 WVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDA 475

Query: 191 SLTQDDIKTYCKGK 204
           +LT +D+  +   +
Sbjct: 476 ALTLEDLAEFLTDR 489

Length = 542

>gnl|CDD|180988 PRK07470, PRK07470, acyl-CoA synthetase; Validated

 Score =  110 bits (278), Expect = 2e-28
 Identities = 53/133 (39%), Positives = 70/133 (52%), Gaps = 2/133 (1%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYG 131
           V++ D +G  +P G  GE+C  G  V  GYY   E N     D WF +GD   L   G+ 
Sbjct: 351 VQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRTGDLGHLDARGFL 410

Query: 132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS 191
            + GR  D+ I GG N+ P+EIE  L THP V E  V GVPD   GEV VA    + GA 
Sbjct: 411 YITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAP 470

Query: 192 LTQDDIKTYCKGK 204
           + + ++  +  GK
Sbjct: 471 VDEAELLAWLDGK 483

Length = 528

>gnl|CDD|235146 PRK03640, PRK03640, O-succinylbenzoic acid--CoA ligase; Provisional

 Score =  110 bits (276), Expect = 2e-28
 Identities = 54/128 (42%), Positives = 75/128 (58%), Gaps = 4/128 (3%)

Query: 79  KKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGR 136
           K G +VP    GE+  +G NV  GY   E+   E   D WF +GD   L E G+  V+ R
Sbjct: 322 KDGVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYLDEEGFLYVLDR 381

Query: 137 IKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDD 196
             D+II GGENI P EIE VL +HP V EA V GVPD++ G+V VA +       +T+++
Sbjct: 382 RSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVK--SGEVTEEE 439

Query: 197 IKTYCKGK 204
           ++ +C+ K
Sbjct: 440 LRHFCEEK 447

Length = 483

>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase

 Score =  107 bits (269), Expect = 1e-27
 Identities = 65/242 (26%), Positives = 101/242 (41%), Gaps = 50/242 (20%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAPCSPTLFNK 62
           R I + + T      TM VDL++         P  A+ +LSS  +    GA   P +  +
Sbjct: 167 RAIERYRVTHWTNIVTMVVDLLAH--------PRFADYDLSSLKVVGGGGAALPPAVAER 218

Query: 63  IRDTFGIKHLI--------------------------------VKVVD-KKGNIVPMGMC 89
           ++   G+ +                                   +V+D + G  +P G  
Sbjct: 219 LKALTGLLYEEGYGLTETHTCTHFNPPDRPKPQCLGIPVFGTDARVIDPETGEELPPGEE 278

Query: 90  GEVCYRGYNVMLGYYGEEN------KILENDEWFPSGDFFILHENGYGQVVGRIKDIIIR 143
           GE+  RG  V  GY+            L+   +F +GD   + E GY   + R+K +I  
Sbjct: 279 GEIVVRGPQVFKGYWNRPEATAESFIELDGKRFFRTGDLGYIDEEGYFFFLDRVKRMINV 338

Query: 144 GGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA--SLTQDDIKTYC 201
            G  + P E+E +L  HP V+E  V G PD R GEVV A + LKP     +T++DI  +C
Sbjct: 339 SGYKVWPAEVEALLYQHPAVLEVCVIGRPDPRRGEVVKAFVVLKPDYRGKVTEEDIIEWC 398

Query: 202 KG 203
           + 
Sbjct: 399 RE 400

The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430

>gnl|CDD|171539 PRK12492, PRK12492, long-chain-fatty-acid--CoA ligase; Provisional

 Score =  107 bits (268), Expect = 4e-27
 Identities = 51/131 (38%), Positives = 77/131 (58%), Gaps = 4/131 (3%)

Query: 75  KVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEEN---KILENDEWFPSGDFFILHENGYG 131
           KV+D  GN +P+G  GE+C +G  VM GY+ +     + L+ + WF +GD  ++  +G+ 
Sbjct: 398 KVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVIDPDGFV 457

Query: 132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS 191
           ++V R KD+II  G N+ P EIE V+  HP V      GVPDER GE V   +  +    
Sbjct: 458 RIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDP-G 516

Query: 192 LTQDDIKTYCK 202
           L+ +++K YCK
Sbjct: 517 LSVEELKAYCK 527

Length = 562

>gnl|CDD|213312 cd05959, BCL_4HBCL, Benzoate CoA ligase (BCL) and 4-Hydroxybenzoate-Coenzyme A Ligase (4-HBA-CoA ligase)

 Score =  106 bits (266), Expect = 6e-27
 Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 44/240 (18%)

Query: 2   ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFN 61
           +   I + K TV +G PT+Y  ++++      E P    +LSS  + ++AG      +  
Sbjct: 244 VFATIERYKPTVFFGVPTLYAAMLAA-----PEKPE--RDLSSLRLCVSAGEALPAEIGY 296

Query: 62  KIRDTFGIK-----------HLI---------------------VKVVDKKGNIVPMGMC 89
           + ++ FG++           H+                      VK+VD+ G  V  G  
Sbjct: 297 RWKELFGLEILDGIGSTEMLHIFLSNRPGAVKYGTSGKPVPGYEVKLVDEDGEEVADGEI 356

Query: 90  GEVCYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
           GE+  RG +   GY+    K  E    EW  +GD +   E+GY    GR  D++   G  
Sbjct: 357 GELWVRGDSSAAGYWNRREKTRETFVGEWTRTGDKYYRDEDGYYWYCGRSDDMLKVSGIW 416

Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG---ASLTQDDIKTYCKGK 204
           + P E+E  L  HP V+EA V G  DE       A + LK G   +   + ++K + K K
Sbjct: 417 VSPFEVEDALLQHPAVLEAAVVGAEDEDGLTKPKAFVVLKDGYQPSPELETELKDFVKDK 476

Benzoate CoA ligase and 4-hydroxybenzoate-coenzyme A ligase catalyze the first activating step for benzoate and 4-hydroxybenzoate catabolic pathways, respectively. Although these two enzymes share very high sequence homology, they have their own substrate preference. The reaction proceeds via a two-step process; the first ATP-dependent step forms the substrate-AMP intermediate, while the second step forms the acyl-CoA ester, releasing the AMP. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Some bacteria can use benzoic acid or benzenoid compounds as the sole source of carbon and energy through degradation. Benzoate CoA ligase and 4-hydroxybenzoate-Coenzyme A ligase are key enzymes of this process. Length = 506

>gnl|CDD|235719 PRK06155, PRK06155, crotonobetaine/carnitine-CoA ligase; Provisional

 Score =  105 bits (264), Expect = 1e-26
 Identities = 54/164 (32%), Positives = 83/164 (50%), Gaps = 11/164 (6%)

Query: 46  VIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRG---YNVMLG 102
           VIA+T G+   P    ++   F       +VVD+    +P G  GE+  R    +    G
Sbjct: 332 VIAVTHGSQ-RPGSMGRLAPGF-----EARVVDEHDQELPDGEPGELLLRADEPFAFATG 385

Query: 103 YYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTH 160
           Y+G   K +E   + WF +GD  +   +G+ + V RIKD I R GENI   E+E VL +H
Sbjct: 386 YFGMPEKTVEAWRNLWFHTGDRVVRDADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSH 445

Query: 161 PDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           P V  A V+ VP E   + V+A + L+ G +L    +  +C+ +
Sbjct: 446 PAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPR 489

Length = 542

>gnl|CDD|213290 cd05923, CBAL, 4-Chlorobenzoate-CoA ligase (CBAL)

 Score =  105 bits (263), Expect = 2e-26
 Identities = 59/203 (29%), Positives = 92/203 (45%), Gaps = 32/203 (15%)

Query: 2   ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFN 61
           +++H+  EK   +YGT              TE M ++             G    P  F+
Sbjct: 289 VNQHLPGEK-VNIYGT--------------TEAMNSLYMR------DPRTGTEMRPGFFS 327

Query: 62  KIRDTFGIKHLIVKVVDKKGNIVPMGMCGE-VCYRGYNVMLGYYGEENKILEN--DEWFP 118
           ++R        IV++       +P G  GE V         GY  +     E   D W+ 
Sbjct: 328 EVR--------IVRIGGSPDEALPNGEEGELVVAAADATFTGYLNQPQATAEKLQDGWYR 379

Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
           + D  ++  +G  +++GR+ D+II GGENI P E+E VL   P V E  V G+PDER G+
Sbjct: 380 TSDVAVVDPSGTVRILGRVDDMIISGGENIHPSEVERVLGRAPGVTEVVVIGLPDERWGQ 439

Query: 179 VVVANIELKPGASLTQDDIKTYC 201
            V A +  + G +L+ D + T+C
Sbjct: 440 SVTACVVPREGETLSADALDTFC 462

CBAL catalyzes the conversion of 4-chlorobenzoate (4-CB) to 4-chlorobenzoyl-coenzyme A (4-CB-CoA) by the two-step adenylation and thioester-forming reactions. 4-Chlorobenzoate (4-CBA) is an environmental pollutant derived from microbial breakdown of aromatic pollutants, such as polychlorinated biphenyls (PCBs), DDT, and certain herbicides. The 4-CBA degrading pathway converts 4-CBA to the metabolite 4-hydroxybezoate (4-HBA), allowing some soil-dwelling microbes to utilize 4-CBA as an alternate carbon source. This pathway consists of three chemical steps catalyzed by 4-CBA-CoA ligase, 4-CBA-CoA dehalogenase, and 4HBA-CoA thioesterase in sequential reactions. Length = 495

>gnl|CDD|236359 PRK08974, PRK08974, long-chain-fatty-acid--CoA ligase; Validated

 Score =  104 bits (262), Expect = 3e-26
 Identities = 52/131 (39%), Positives = 77/131 (58%), Gaps = 3/131 (2%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYG 131
           +K+VD  GN VP G  GE+  +G  VMLGY+   E    +  D W  +GD  ++ E G+ 
Sbjct: 389 IKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMDEEGFL 448

Query: 132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS 191
           ++V R KD+I+  G N+ P EIE V+  HP V+E    GVP E  GE V   + +K   S
Sbjct: 449 RIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFV-VKKDPS 507

Query: 192 LTQDDIKTYCK 202
           LT++++ T+C+
Sbjct: 508 LTEEELITHCR 518

Length = 560

>gnl|CDD|235625 PRK05852, PRK05852, acyl-CoA synthetase; Validated

 Score =  104 bits (260), Expect = 4e-26
 Identities = 52/133 (39%), Positives = 76/133 (57%), Gaps = 2/133 (1%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYG 131
           +++V   G  +P G  GEV  RG  V+ GY G+      N  D W  +GD   L   G  
Sbjct: 365 IRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTGDLGSLSAAGDL 424

Query: 132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS 191
            + GRIK++I RGGE I P+ +E VL +HP+V+EA V+GVPD+  GE V A I  +  A 
Sbjct: 425 SIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAP 484

Query: 192 LTQDDIKTYCKGK 204
            T +++  +C+ +
Sbjct: 485 PTAEELVQFCRER 497

Length = 534

>gnl|CDD|181011 PRK07514, PRK07514, malonyl-CoA synthase; Validated

 Score =  101 bits (253), Expect = 4e-25
 Identities = 54/138 (39%), Positives = 74/138 (53%), Gaps = 10/138 (7%)

Query: 74  VKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYY------GEENKILENDEWFPSGDFFILH 126
           ++V D + G  +P G  G +  +G NV  GY+       EE      D +F +GD   + 
Sbjct: 332 LRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEE---FRADGFFITGDLGKID 388

Query: 127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL 186
           E GY  +VGR KD+II GG N+ PKE+E  +   P VVE+ V GVP    GE V A +  
Sbjct: 389 ERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVP 448

Query: 187 KPGASLTQDDIKTYCKGK 204
           KPGA+L +  I    KG+
Sbjct: 449 KPGAALDEAAILAALKGR 466

Length = 504

>gnl|CDD|181546 PRK08751, PRK08751, putative long-chain fatty acyl CoA ligase; Provisional

 Score =  101 bits (253), Expect = 4e-25
 Identities = 48/128 (37%), Positives = 74/128 (57%), Gaps = 4/128 (3%)

Query: 78  DKKGNIVPMGMCGEVCYRGYNVMLGYYG---EENKILENDEWFPSGDFFILHENGYGQVV 134
           D  G ++ +G  GE+C +G  VM GY+    E  K+++ D W  +GD   + E G+  +V
Sbjct: 397 DDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARMDEQGFVYIV 456

Query: 135 GRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ 194
            R KD+I+  G N+ P EIE V+   P V+E    GVPDE+ GE+V   I +K   +LT 
Sbjct: 457 DRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVI-VKKDPALTA 515

Query: 195 DDIKTYCK 202
           +D+K + +
Sbjct: 516 EDVKAHAR 523

Length = 560

>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase

 Score =  101 bits (253), Expect = 4e-25
 Identities = 49/132 (37%), Positives = 68/132 (51%), Gaps = 1/132 (0%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEEN-KILENDEWFPSGDFFILHENGYGQ 132
           VKV+D  G  +  G  G +  RG +   GY    +    + + WF +GD       GY +
Sbjct: 375 VKVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDLAFQDAEGYIR 434

Query: 133 VVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASL 192
           + GR KD+IIRGGENI   EIE +L  HP V +  +   PDERLGE   A +  KPG +L
Sbjct: 435 INGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTL 494

Query: 193 TQDDIKTYCKGK 204
               +  + K +
Sbjct: 495 DFAAMVAFLKAQ 506

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538

>gnl|CDD|236097 PRK07788, PRK07788, acyl-CoA synthetase; Validated

 Score = 99.2 bits (248), Expect = 2e-24
 Identities = 74/234 (31%), Positives = 101/234 (43%), Gaps = 39/234 (16%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKI 63
             I K K T L   P M    +S I  L  E+     + SS  I   +G+  SP L  + 
Sbjct: 289 EDIAKHKATALVVVPVM----LSRILDLGPEVLA-KYDTSSLKIIFVSGSALSPELATRA 343

Query: 64  RDTFG---------------------------------IKHLIVKVVDKKGNIVPMGMCG 90
            + FG                                  K + VK++D+ GN VP G+ G
Sbjct: 344 LEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVVG 403

Query: 91  EVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIP 150
            +         GY    +K +  D    SGD     E+G   V GR  D+I+ GGEN+ P
Sbjct: 404 RIFVGNGFPFEGYTDGRDKQII-DGLLSSGDVGYFDEDGLLFVDGRDDDMIVSGGENVFP 462

Query: 151 KEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
            E+E +L  HPDVVEA V GV DE  G+ + A +   PGA+L +D IK Y +  
Sbjct: 463 AEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDN 516

Length = 549

>gnl|CDD|236215 PRK08276, PRK08276, long-chain-fatty-acid--CoA ligase; Validated

 Score = 98.1 bits (245), Expect = 5e-24
 Identities = 67/242 (27%), Positives = 105/242 (43%), Gaps = 47/242 (19%)

Query: 1   MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLF 60
           +I R+    + T     PTM+V ++     L EE+     ++SS  +A+ A APC   + 
Sbjct: 229 LIERY----RVTHSQLVPTMFVRMLK----LPEEVRA-RYDVSSLRVAIHAAAPCPVEVK 279

Query: 61  NKIRDTFG-----------------------IKHL---------IVKVVDKKGNIVPMGM 88
             + D +G                       + H           V+++D+ GN +P G 
Sbjct: 280 RAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAVLGEVRILDEDGNELPPGE 339

Query: 89  CGEVCYRGYNVMLGYYGEENKILENDE---WFPSGDFFILHENGYGQVVGRIKDIIIRGG 145
            G V +        Y+ +  K         W   GD   L E+GY  +  R  D+II GG
Sbjct: 340 IGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLDEDGYLYLTDRKSDMIISGG 399

Query: 146 ENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQD---DIKTYCK 202
            NI P+EIE +L THP V +  V+GVPDE +GE V A ++   GA        ++  + +
Sbjct: 400 VNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLR 459

Query: 203 GK 204
           G+
Sbjct: 460 GR 461

Length = 502

>gnl|CDD|183506 PRK12406, PRK12406, long-chain-fatty-acid--CoA ligase; Provisional

 Score = 97.8 bits (244), Expect = 7e-24
 Identities = 47/133 (35%), Positives = 72/133 (54%), Gaps = 3/133 (2%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYR-GYNVMLGYYG--EENKILENDEWFPSGDFFILHENGY 130
           ++ VD+ G  +P G  GE+  R   N    Y+   E+   ++   +  SGD   L  +GY
Sbjct: 335 LRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYLDADGY 394

Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA 190
             +  R +D++I GG NI P EIE VL   P V +  V+G+PD   GE ++A +E +PGA
Sbjct: 395 LFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGA 454

Query: 191 SLTQDDIKTYCKG 203
           +L + DI+   K 
Sbjct: 455 TLDEADIRAQLKA 467

Length = 509

>gnl|CDD|181195 PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated

 Score = 97.4 bits (243), Expect = 9e-24
 Identities = 40/134 (29%), Positives = 68/134 (50%), Gaps = 6/134 (4%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGY---NVMLGYYGEEN---KILENDEWFPSGDFFILHE 127
            ++ D     +P G  GE+C +G     +   YY +     K+LE D W  +GD   + E
Sbjct: 351 AEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDTGYVDE 410

Query: 128 NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK 187
            G+   V R  ++I RGGEN+   E+E ++ THP + +  V G+ D    E + A + L 
Sbjct: 411 EGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLN 470

Query: 188 PGASLTQDDIKTYC 201
            G +L++++   +C
Sbjct: 471 EGETLSEEEFFAFC 484

Length = 517

>gnl|CDD|236803 PRK10946, entE, enterobactin synthase subunit E; Provisional

 Score = 97.0 bits (242), Expect = 1e-23
 Identities = 46/122 (37%), Positives = 62/122 (50%), Gaps = 7/122 (5%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG--EEN-KILENDEWFPSGDFFILHENGY 130
           V V D  GN +P G  G +  RG     GYY   + N    + + ++ SGD   +  +GY
Sbjct: 365 VWVADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVSIDPDGY 424

Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE----VVVANIEL 186
             VVGR KD I RGGE I  +EIE +L  HP V+ A +  + DE +GE     +V    L
Sbjct: 425 ITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEPL 484

Query: 187 KP 188
           K 
Sbjct: 485 KA 486

Length = 536

>gnl|CDD|178097 PLN02479, PLN02479, acetate-CoA ligase

 Score = 96.8 bits (241), Expect = 2e-23
 Identities = 52/122 (42%), Positives = 69/122 (56%), Gaps = 7/122 (5%)

Query: 90  GEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
           GE+  RG  VM GY    + N+    + WF SGD  + H +GY ++  R KDIII GGEN
Sbjct: 403 GEIVMRGNMVMKGYLKNPKANEEAFANGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGEN 462

Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA-----SLTQDDIKTYCK 202
           I   E+E V+ THP V+EA V   PDER GE   A + LKPG      +   +DI  +C+
Sbjct: 463 ISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKSDEAALAEDIMKFCR 522

Query: 203 GK 204
            +
Sbjct: 523 ER 524

Length = 567

>gnl|CDD|213327 cd12119, ttLC_FACS_AlkK_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 96.5 bits (241), Expect = 2e-23
 Identities = 54/138 (39%), Positives = 79/138 (57%), Gaps = 10/138 (7%)

Query: 74  VKVVDKKGNIVP-----MGMCGEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILH 126
           +++VD +GN +P     +G   E+  RG  V   YY   E+ + L  D WF +GD  ++ 
Sbjct: 352 LRIVDDEGNELPWDGKTVG---ELVVRGPWVTGSYYKDPEKTEELTRDGWFRTGDVAVID 408

Query: 127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL 186
           E+GY Q+  R KD+I  GGE I   E+E  L  HP V EA V GVP E+ GE  +A + L
Sbjct: 409 EDGYIQITDRAKDVIKSGGEWISSVELENALMAHPAVAEAAVVGVPHEKWGERPLAVVVL 468

Query: 187 KPGASLTQDDIKTYCKGK 204
           KPGA +T++++  +   K
Sbjct: 469 KPGAKVTEEELLEHLAKK 486

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family was shown catalyzing the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified from Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes uncharacterized FACS proteins. Length = 517

>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase

 Score = 96.4 bits (240), Expect = 3e-23
 Identities = 47/118 (39%), Positives = 66/118 (55%), Gaps = 3/118 (2%)

Query: 90  GEVCYRGYNVMLGYYG---EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
           G +  RG +VMLGY+G   E   +L ND W  +GD   + + G   ++GR  D I  GGE
Sbjct: 386 GRILTRGPHVMLGYWGQNSETASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGE 445

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           N+ P+E+E VL  HP V    V GVPD RL E+VVA + L+ G   + ++ +   K  
Sbjct: 446 NVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLRDGWIWSDNEKENAKKNL 503

Length = 563

>gnl|CDD|172019 PRK13382, PRK13382, acyl-CoA synthetase; Provisional

 Score = 96.0 bits (239), Expect = 3e-23
 Identities = 52/129 (40%), Positives = 73/129 (56%), Gaps = 1/129 (0%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQV 133
           ++++D+    VP G  G +  R      GY     K   +D +  SGD   L ENG   V
Sbjct: 376 IRILDQDFREVPTGEVGTIFVRNDTQFDGYTSGSTKDF-HDGFMASGDVGYLDENGRLFV 434

Query: 134 VGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT 193
           VGR  ++I+ GGEN+ P E+E  L THPDV EA V GV DE+ G+ + A + LKPGAS T
Sbjct: 435 VGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASAT 494

Query: 194 QDDIKTYCK 202
            + +K + +
Sbjct: 495 PETLKQHVR 503

Length = 537

>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

 Score = 95.0 bits (237), Expect = 7e-23
 Identities = 65/224 (29%), Positives = 95/224 (42%), Gaps = 43/224 (19%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFN---- 61
           + K K T+   +PT    L+         +     +LSS  +  +AG P +P  F     
Sbjct: 260 LEKYKVTIFGTSPTFLRRLMK------LGLGE-PYDLSSLRVLGSAGEPLNPEAFEWFYS 312

Query: 62  ----KIRDTFG--------IKHL---------------IVKVVDKKGNIVPMGMCGEVCY 94
                I D +G        I                   V+ VD +GN VP G+ GE+  
Sbjct: 313 ALGVWILDIYGQTETGMGFIAGRPPVKNGSSGLPLPGYAVRRVDDEGNPVPPGV-GELVV 371

Query: 95  RGYN--VMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIP 150
           R     + L Y+ +  +  E     W+ +GD+    E+GY  + GR  D+I   G+ I P
Sbjct: 372 RLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAERDEDGYFWLHGRSDDVIKVSGKRIGP 431

Query: 151 KEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ 194
            EIE VL  HP V EA V GVPD   G++V+A + L  G    +
Sbjct: 432 LEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPNE 475

Length = 528

>gnl|CDD|236100 PRK07798, PRK07798, acyl-CoA synthetase; Validated

 Score = 95.0 bits (237), Expect = 8e-23
 Identities = 50/146 (34%), Positives = 76/146 (52%), Gaps = 10/146 (6%)

Query: 64  RDTFGIKHLIVKVVDKKGNIVPMG--MCGEVCYRGYNVMLGYYGEENK------ILENDE 115
              F I    V V+D+ GN V  G    G +  RG+ + LGYY +  K       ++   
Sbjct: 351 GPRFTIGPRTV-VLDEDGNPVEPGSGEIGWIARRGH-IPLGYYKDPEKTAETFPTIDGVR 408

Query: 116 WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDER 175
           +   GD   +  +G   ++GR    I  GGE + P+E+E  L+ HPDV +A V GVPDER
Sbjct: 409 YAIPGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDER 468

Query: 176 LGEVVVANIELKPGASLTQDDIKTYC 201
            G+ VVA ++L+ GA     +++ +C
Sbjct: 469 WGQEVVAVVQLREGARPDLAELRAHC 494

Length = 533

>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)

 Score = 94.6 bits (236), Expect = 9e-23
 Identities = 43/131 (32%), Positives = 73/131 (55%), Gaps = 4/131 (3%)

Query: 74  VKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGEEN---KILENDEWFPSGDFFILHENG 129
            K+VD + G  +P    GE+  RG  VM GY        + ++ D W  +GD     E+G
Sbjct: 341 AKIVDPETGESLPPNQPGELWVRGPQVMKGYLNNPEATAETIDKDGWLHTGDLGYFDEDG 400

Query: 130 YGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
           Y  +V R+K++I   G  + P E+E +L +HP++ +A V   PDE  GE+ +A +  +PG
Sbjct: 401 YLFIVDRLKELIKYKGFQVAPAELEALLLSHPEIADAAVIPYPDEEAGEIPMAFVVRQPG 460

Query: 190 ASLTQDDIKTY 200
           + L++D++  +
Sbjct: 461 SELSEDEVMQF 471

4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504

>gnl|CDD|235724 PRK06178, PRK06178, acyl-CoA synthetase; Validated

 Score = 94.3 bits (235), Expect = 1e-22
 Identities = 44/132 (33%), Positives = 74/132 (56%), Gaps = 3/132 (2%)

Query: 74  VKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGY 130
            K+ D + G ++P+G  GE+  R  +++ GY+   E       D W  +GD   + E G+
Sbjct: 398 FKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGWLHTGDIGKIDEQGF 457

Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA 190
              +GR K+++   G ++ P E+E +L  HP V+ + V G PD   G+V VA ++LKPGA
Sbjct: 458 LHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGA 517

Query: 191 SLTQDDIKTYCK 202
            LT   ++ +C+
Sbjct: 518 DLTAAALQAWCR 529

Length = 567

>gnl|CDD|215312 PLN02574, PLN02574, 4-coumarate--CoA ligase-like

 Score = 94.1 bits (234), Expect = 2e-22
 Identities = 48/130 (36%), Positives = 75/130 (57%), Gaps = 4/130 (3%)

Query: 75  KVVD-KKGNIVPMGMCGEVCYRGYNVMLGYY-GEENKIL--ENDEWFPSGDFFILHENGY 130
           KVVD   G ++P G CGE+  +G  VM GY    +      + D W  +GD     E+GY
Sbjct: 386 KVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGDIAYFDEDGY 445

Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA 190
             +V R+K+II   G  I P ++E VL +HP++++A V  VPD+  GE+ VA +  + G+
Sbjct: 446 LYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGS 505

Query: 191 SLTQDDIKTY 200
           +L+Q+ +  Y
Sbjct: 506 TLSQEAVINY 515

Length = 560

>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase

 Score = 93.3 bits (232), Expect = 2e-22
 Identities = 48/117 (41%), Positives = 63/117 (53%), Gaps = 4/117 (3%)

Query: 90  GEVCYRGYNVMLGYY--GEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
           GE+  +G N+M GY   GE     E   WF +GD   L   G+  V+GR  D+II GGEN
Sbjct: 293 GEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFLYVLGRRDDLIISGGEN 352

Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           I P+EIE VL  HP + EA V   PD   G+V VA I  +  + ++Q  +  Y   K
Sbjct: 353 IYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSE--SDISQAKLIAYLTEK 407

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436

>gnl|CDD|213291 cd05924, FACL_like_5, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 92.3 bits (230), Expect = 2e-22
 Identities = 57/188 (30%), Positives = 90/188 (47%), Gaps = 23/188 (12%)

Query: 31  LTEEMPNI-------AEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNI 83
           L E +PN+       A E      +++     S T   ++            V+D+ G+ 
Sbjct: 155 LLELLPNLALVDALGASETGGGGSSVSRAGGASATGKFELGPD-------TVVLDEDGSE 207

Query: 84  VPMG--MCGEVCYRGYNVMLGYYGEENK------ILENDEWFPSGDFFILHENGYGQVVG 135
           VP G    G +   G  V LGYY +  K       ++   +   GDF  +  +G   ++G
Sbjct: 208 VPPGSGEVGWIARGGR-VPLGYYKDPEKTAKTFREIDGVRYAVPGDFARVEADGTITLLG 266

Query: 136 RIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQD 195
           R    I  GGE + P+E+E  L+ HPDV +A V GVPDER G+ VVA ++L+ GA L   
Sbjct: 267 RGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQRVVAVVQLRAGAGLDLA 326

Query: 196 DIKTYCKG 203
           +++ +C+ 
Sbjct: 327 ELRDHCRQ 334

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 365

>gnl|CDD|213318 cd05971, MACS_like_3, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 92.0 bits (229), Expect = 5e-22
 Identities = 45/121 (37%), Positives = 57/121 (47%), Gaps = 4/121 (3%)

Query: 73  IVKVVDKKGNIVPMGMCGEVCYRGYN--VMLGYYGEENKILEN--DEWFPSGDFFILHEN 128
            V VVD  G  VP G  GE+  +  +  + LGY+            +W  +GD      +
Sbjct: 270 EVAVVDDAGRPVPPGEVGEIAVKRPDPVMFLGYWNNPEATAAKFAGDWLLTGDLGRRDAD 329

Query: 129 GYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKP 188
           GY    GR  D+I   G  I P EIE  L  HP V+EA V GVPD   GE+V A + L  
Sbjct: 330 GYLWFKGRADDVIKSSGYRIGPAEIEECLLKHPAVLEAAVVGVPDPERGEIVKAFVVLAE 389

Query: 189 G 189
           G
Sbjct: 390 G 390

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 439

>gnl|CDD|213319 cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 91.3 bits (227), Expect = 1e-21
 Identities = 65/234 (27%), Positives = 93/234 (39%), Gaps = 60/234 (25%)

Query: 1   MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVI-----ALTAGAPC 55
           ++ R+ V    T     PT Y  L+              ++LSS         ++AG P 
Sbjct: 167 LLERYGV----TTFCAPPTAYRMLL-------------QQDLSSYDFSHLRHVVSAGEPL 209

Query: 56  SPTLFN--------KIRDTFG----------IKHLIVK--------------VVDKKGNI 83
           +P + +         IRD +G             + VK              ++D +GN 
Sbjct: 210 NPEVIDWWRAATGLPIRDGYGQTETGLLVANFPGMEVKPGSMGRPAPGYRVAIIDDEGNE 269

Query: 84  VPMGMCGEVC----YRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRI 137
           +P G  G++      R   +  GY  +  K       +W+ +GD  I  E+GY   VGR 
Sbjct: 270 LPPGEEGDIAVRVKPRPPGLFRGYLKDPEKTEATIRGDWYLTGDRAIKDEDGYFWFVGRA 329

Query: 138 KDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS 191
            D+I   G  I P E+E  L  HP V EA V G PD   GEVV A + L PG  
Sbjct: 330 DDVIKSSGYRIGPFEVESALIEHPAVAEAAVVGSPDPVRGEVVKAFVVLAPGYQ 383

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. Length = 430

>gnl|CDD|236235 PRK08314, PRK08314, long-chain-fatty-acid--CoA ligase; Validated

 Score = 91.2 bits (227), Expect = 1e-21
 Identities = 61/244 (25%), Positives = 99/244 (40%), Gaps = 54/244 (22%)

Query: 2   ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAPCSPTLF 60
           I R+    + T     PTM VD ++S        P +AE +LSS       GA     + 
Sbjct: 275 IERY----RVTHWTNIPTMVVDFLAS--------PGLAERDLSSLRYIGGGGAAMPEAVA 322

Query: 61  NKIRDTFGIK-------------------------HLIV-------KVVD-KKGNIVPMG 87
            ++++  G+                           L +       +V+D +    +P G
Sbjct: 323 ERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEELPPG 382

Query: 88  MCGEVCYRGYNVMLGYYG--EENK----ILENDEWFPSGDFFILHENGYGQVVGRIKDII 141
             GE+   G  V  GY+   E        ++   +F +GD   + E GY  +  R+K +I
Sbjct: 383 EVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDLGRMDEEGYFFITDRLKRMI 442

Query: 142 IRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA--SLTQDDIKT 199
              G  + P E+E +L  HP + EA V   PD R GE V A + L+P A    T+++I  
Sbjct: 443 NASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIA 502

Query: 200 YCKG 203
           + + 
Sbjct: 503 WARE 506

Length = 546

>gnl|CDD|132249 TIGR03205, pimA, dicarboxylate--CoA ligase PimA

 Score = 89.2 bits (221), Expect = 8e-21
 Identities = 68/242 (28%), Positives = 109/242 (45%), Gaps = 47/242 (19%)

Query: 2   ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNI-AEELSSPVIALTAGAPCSPTLF 60
           + R I +++ TV  G PTM++ L +         P++   +LSS     + GAP    + 
Sbjct: 278 VFRDIEEKRATVFPGVPTMWIALAN--------DPSLEKRDLSSLATIGSGGAPLPVEVA 329

Query: 61  N--------KIRDTFGIKH---------------------------LIVKVVDKKGNIVP 85
           N        K++  +G+                             L V  +D    ++P
Sbjct: 330 NFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLP 389

Query: 86  MGMCGEVCYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIR 143
            G  GE+  RG NV  GY+    +  E    + F +GD   +  +GY  +V R KD+II 
Sbjct: 390 PGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGYMDTDGYFFLVDRKKDMIIS 449

Query: 144 GGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS-LTQDDIKTYCK 202
           GG N+ P+ IE  +  HP V E  V G+PD+  GE   A ++L+PGA   + D+++ +  
Sbjct: 450 GGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLA 509

Query: 203 GK 204
           GK
Sbjct: 510 GK 511

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids. Length = 541

>gnl|CDD|235673 PRK06018, PRK06018, putative acyl-CoA synthetase; Provisional

 Score = 89.0 bits (221), Expect = 9e-21
 Identities = 47/143 (32%), Positives = 74/143 (51%), Gaps = 5/143 (3%)

Query: 64  RDTFGIKHLIVKVVDKKGNIVPMG--MCGEVCYRGYNVMLGYYGEENKILENDEWFPSGD 121
              FG++   +K+ D  G  +P      G +  RG  V   YY  + +IL++D +F +GD
Sbjct: 360 YPPFGVE---MKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYRVDGEILDDDGFFDTGD 416

Query: 122 FFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVV 181
              +   GY ++  R KD+I  GGE I   ++E +   HP V EA V GV   +  E  +
Sbjct: 417 VATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPL 476

Query: 182 ANIELKPGASLTQDDIKTYCKGK 204
             ++LKPG + T+++I  Y  GK
Sbjct: 477 LIVQLKPGETATREEILKYMDGK 499

Length = 542

>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

 Score = 88.9 bits (221), Expect = 1e-20
 Identities = 41/142 (28%), Positives = 62/142 (43%), Gaps = 16/142 (11%)

Query: 50  TAGAPCSPTLFNKIRDTFG--IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEE 107
           T+           +  T G  +  + VK+ D           GE+  RG NVM GYY   
Sbjct: 389 TSAVVSVNPPDRFVLGTVGKPLPGIEVKIADD----------GEILVRGPNVMKGYYKNP 438

Query: 108 N---KILENDEWFPSGDFFILHENGYGQVVGRIKDIII-RGGENIIPKEIEYVLQTHPDV 163
               +    D WF +GD   L E+GY  + GR K++I    G+NI P+ IE  L   P +
Sbjct: 439 EATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLI 498

Query: 164 VEAQVYGVPDERLGEVVVANIE 185
            +  V G   + L  ++V + +
Sbjct: 499 EQICVVGDDKKFLVALIVPDFD 520

Length = 613

>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases

 Score = 86.4 bits (215), Expect = 6e-20
 Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 4/100 (4%)

Query: 90  GEVCYRGYNVMLGYYGEENK---ILENDEWFPSGDFFILHENGYGQVVGRIKDIII-RGG 145
           GE+  RG NVM GYY         L+ D W  +GD   L E+G+  +  R KD+I+  GG
Sbjct: 283 GEILVRGPNVMKGYYKNPEATAEALDEDGWLHTGDIGRLDEDGFLVITDRKKDLIVTAGG 342

Query: 146 ENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIE 185
           +NI P+ IE  L+  P + +A V G     L  ++V + E
Sbjct: 343 KNIAPQPIENALKASPYISQAVVVGDDRPYLTALIVLDPE 382

This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456

>gnl|CDD|180666 PRK06710, PRK06710, long-chain-fatty-acid--CoA ligase; Validated

 Score = 86.6 bits (214), Expect = 6e-20
 Identities = 67/233 (28%), Positives = 111/233 (47%), Gaps = 33/233 (14%)

Query: 1   MISRHIVKEKCTVLYGTPTMYVDL----------ISSIQ-------PLTEEMPNIAEELS 43
           M+   I K K T+  G PT+Y+ L          ISSI+       PL  E+    E ++
Sbjct: 288 MVFEAIKKHKVTLFPGAPTIYIALLNSPLLKEYDISSIRACISGSAPLPVEVQEKFETVT 347

Query: 44  SPVI----ALTAGAPCSPTLF---NKIRDTFGI-----KHLIVKVVDKKGNIVPMGMCGE 91
              +     LT  +P + + F    ++  + G+     + +I+ +  + G  +P G  GE
Sbjct: 348 GGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSL--ETGEALPPGEIGE 405

Query: 92  VCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENII 149
           +  +G  +M GY+   EE   +  D W  +GD   + E+G+  V  R KD+I+  G N+ 
Sbjct: 406 IVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYMDEDGFFYVKDRKKDMIVASGFNVY 465

Query: 150 PKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
           P+E+E VL  H  V E    GVPD   GE V A + LK G   +++++  + +
Sbjct: 466 PREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFAR 518

Length = 563

>gnl|CDD|223952 COG1021, EntE, Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 86.7 bits (215), Expect = 6e-20
 Identities = 56/146 (38%), Positives = 73/146 (50%), Gaps = 16/146 (10%)

Query: 46  VIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG 105
           +I  T G P SP                V+VVD  GN V  G  GE+  RG   + GYY 
Sbjct: 355 IIIHTQGRPLSP-------------DDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYR 401

Query: 106 --EEN-KILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPD 162
             E N +  + D ++ SGD      +GY  V GR+KD I RGGE I  +E+E +L  HP 
Sbjct: 402 APEHNARAFDADGFYRSGDLVRRDPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPA 461

Query: 163 VVEAQVYGVPDERLGEVVVANIELKP 188
           V +A +  +PDE LGE   A I +K 
Sbjct: 462 VHDAALVAMPDELLGEKSCAFIVVKE 487

Length = 542

>gnl|CDD|213311 cd05958, ABCL, 2-aminobenzoate-CoA ligase (ABCL)

 Score = 86.4 bits (214), Expect = 8e-20
 Identities = 62/225 (27%), Positives = 96/225 (42%), Gaps = 41/225 (18%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           I + + T+L+  PT Y       + +  ++   A ++SS    ++AG      ++    +
Sbjct: 233 IQEHRATILFTAPTAY-------RAMLIKVK--AFDISSLRKCVSAGETLPAKVWQDWYE 283

Query: 66  TFGIK-----------HLIV---------------------KVVDKKGNIVPMGMCGEVC 93
             G+K           H+ +                     ++VD +GN VP G  G + 
Sbjct: 284 RTGLKIIDGIGATEMLHIFISANEENAKPGATGKPVPGYEARIVDDQGNEVPRGEAGRLA 343

Query: 94  YRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEI 153
            RG         E  +    D W  +GD F   E+GY   V R  D+I+  G NI   E+
Sbjct: 344 VRGPTGCRYLDDERQQEYVRDGWNVTGDIFRQDEDGYFHYVARSDDMIVSAGYNIAAPEV 403

Query: 154 EYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIK 198
           E  L THPDV E  V GVPDE  G++V A+I L+ G   T+   +
Sbjct: 404 EDALLTHPDVAECAVIGVPDEERGQIVCAHIVLRDGTKATELLAE 448

ABCL catalyzes the initial step in the 2-aminobenzoate aerobic degradation pathway by activating 2-aminobenzoate to 2-aminobenzoyl-CoA. The reaction is carried out via a two-step process; the first step is ATP-dependent and forms a 2-aminobenzoyl-AMP intermediate, and the second step forms the 2-aminobenzoyl-CoA ester and releases the AMP. 2-Aminobenzoyl-CoA is further converted to 2-amino-5-oxo-cyclohex-1-ene-1-carbonyl-CoA catalyzed by 2-aminobenzoyl-CoA monooxygenase/reductase. ABCL has been purified from cells aerobically grown with 2-aminobenzoate as sole carbon, energy, and nitrogen source, and has been characterized as a monomer. Length = 487

>gnl|CDD|233807 TIGR02275, DHB_AMP_lig, 2,3-dihydroxybenzoate-AMP ligase

 Score = 86.0 bits (213), Expect = 8e-20
 Identities = 55/154 (35%), Positives = 71/154 (46%), Gaps = 21/154 (13%)

Query: 43  SSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLG 102
            + +I  T G P SP                V+VVD  GN V  G  G +  RG     G
Sbjct: 345 PAEIIFTTQGRPMSP-------------DDEVRVVDDHGNPVAPGETGMLLTRGPYTFRG 391

Query: 103 YYGEEN---KILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT 159
           YY          + + ++ +GD   L   GY  VVGR KD I RGGE I  +EIE +L  
Sbjct: 392 YYKAPEHNAAAFDAEGFYYTGDLVRLTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLA 451

Query: 160 HPDVVEAQVYGVPDERLGE-----VVVANIELKP 188
           HP V +A +  +PDE LGE     +VV +  LK 
Sbjct: 452 HPAVHDAALVSMPDELLGEKSCAFIVVRDPALKA 485

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB [Transport and binding proteins, Cations and iron carrying compounds]. Length = 526

>gnl|CDD|215189 PLN02330, PLN02330, 4-coumarate--CoA ligase-like 1

 Score = 83.1 bits (205), Expect = 1e-18
 Identities = 48/138 (34%), Positives = 76/138 (55%), Gaps = 4/138 (2%)

Query: 67  FGIKHLIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYG---EENKILENDEWFPSGDF 122
           F + +L VK +D   G  +P    GE+C R   VM GYY    E ++ ++ D W  +GD 
Sbjct: 365 FILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWLHTGDI 424

Query: 123 FILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVA 182
             + ++G   +V RIK++I   G  + P E+E +L THP V +A V  +PDE  GE+  A
Sbjct: 425 GYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAA 484

Query: 183 NIELKPGASLTQDDIKTY 200
            + + P A  +++DI  +
Sbjct: 485 CVVINPKAKESEEDILNF 502

Length = 546

>gnl|CDD|139531 PRK13383, PRK13383, acyl-CoA synthetase; Provisional

 Score = 83.1 bits (205), Expect = 1e-18
 Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 1/131 (0%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQV 133
           V+++D+    V   + G +   G      Y     K +  D    +GD   L   G   +
Sbjct: 356 VRILDRNNRPVGPRVTGRIFVGGELAGTRYTDGGGKAVV-DGMTSTGDMGYLDNAGRLFI 414

Query: 134 VGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT 193
           VGR  D+II GGEN+ P+ +E  L  HP V +  V GVPDER G  + A + L PG+ + 
Sbjct: 415 VGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVD 474

Query: 194 QDDIKTYCKGK 204
              ++ Y K +
Sbjct: 475 AAQLRDYLKDR 485

Length = 516

>gnl|CDD|213297 cd05931, FAAL, Fatty acyl-AMP ligase (FAAL)

 Score = 81.1 bits (201), Expect = 5e-18
 Identities = 37/138 (26%), Positives = 59/138 (42%), Gaps = 19/138 (13%)

Query: 74  VKVVDKKGNI-VPMGMCGEVCYRGYNVMLGYYGEE-------NKILENDE--WFPSGDFF 123
           V++VD +    +P G  GE+  RG +V  GY+             L  DE  W  +GD  
Sbjct: 366 VRIVDPETRRPLPDGEVGEIWVRGPSVAAGYWNRPEATAETFGARLATDEGGWLRTGDLG 425

Query: 124 ILHENGYGQ--VVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQ---VYGVPDERLGE 178
            LH+   G+  V GR+KD+II  G N  P++IE  ++     +       + V  +    
Sbjct: 426 FLHD---GELYVTGRLKDLIIIRGRNHYPQDIEATVERAHPALRPGAAAAFSVDGDGEER 482

Query: 179 VVVANIELKPGASLTQDD 196
           +VV   E++         
Sbjct: 483 LVVV-AEVRRRGLPADLA 499

FAAL belongs to the class I adenylate forming enzyme family and is homologous to fatty acyl-coenzyme A (CoA) ligases (FACLs). However, FAALs produce only the acyl adenylate and are unable to perform the thioester-forming reaction, while FACLs perform a two-step catalytic reaction; AMP ligation followed by CoA ligation using ATP and CoA as cofactors. FAALs have insertion motifs between the N-terminal and C-terminal subdomains that distinguish them from the FACLs. This insertion motif precludes the binding of CoA, thus preventing CoA ligation. It has been suggested that the acyl adenylates serve as substrates for multifunctional polyketide synthases to permit synthesis of complex lipids such as phthiocerol dimycocerosate, sulfolipids, mycolic acids, and mycobactin. Length = 547

>gnl|CDD|213286 cd05919, BCL_like, Benzoate CoA ligase (BCL) and similar adenylate forming enzymes

 Score = 80.8 bits (200), Expect = 6e-18
 Identities = 56/220 (25%), Positives = 89/220 (40%), Gaps = 41/220 (18%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           + + + TVL+G P +Y  L+ S        P       S  + ++AG      L  +  +
Sbjct: 178 LARHRPTVLFGVPALYRALLES---GAGSAPL----FRSVRLCVSAGEALPAGLAERWAE 230

Query: 66  TFGIK-----------HLI---------------------VKVVDKKGNIVPMGMCGEVC 93
             GI+           H+                       ++VD+ G  VP G  G++ 
Sbjct: 231 ATGIEILDGIGSTEVLHIFISNRPGAARPGTTGRPVPGYEARLVDESGREVPAGTVGDLW 290

Query: 94  YRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPK 151
            RG ++  GY+    K      D W  +GD F    +G+ +  GR  D+I   G+ + P 
Sbjct: 291 VRGPSLAPGYWNLPEKTQRTLRDGWLRTGDRFSRDADGWYRYQGRADDMIKVSGQWVSPL 350

Query: 152 EIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS 191
           E+E  L  HP V EA V  VPDE     + A +  +PG +
Sbjct: 351 EVEAALGEHPAVAEAAVVAVPDEDGLVRLKAFVVPRPGEA 390

This family contains benzoate CoA ligase (BCL) and related ligases that catalyze the acylation of benzoate derivatives, 2-aminobenzoate and 4-hydroxybenzoate. Aromatic compounds represent the second most abundant class of organic carbon compounds after carbohydrates. Xenobiotic aromatic compounds are also a major class of man-made pollutants. Some bacteria use benzoate as the sole source of carbon and energy through benzoate degradation. Benzoate degradation starts with its activation to benzoyl-CoA by benzoate CoA ligase. The reaction catalyzed by benzoate CoA ligase proceeds via a two-step process; the first ATP-dependent step forms an acyl-AMP intermediate, and the second step forms the acyl-CoA ester with release of the AMP. Length = 436

>gnl|CDD|213316 cd05969, MACS_like_4, Uncharacterized subfamily of Acetyl-CoA synthetase like family (ACS)

 Score = 80.5 bits (199), Expect = 6e-18
 Identities = 45/140 (32%), Positives = 71/140 (50%), Gaps = 11/140 (7%)

Query: 76  VVDKKGN----IVPMGMCGEVCYR-GYNVML-GYYGEENKILEN--DEWFPSGDFFILHE 127
           V+++ G+    +   G  GE+  + G+  M  GY G E +   +  D W+ +GD     E
Sbjct: 273 VIERDGDGLTPVTGPGQVGELALKPGWPSMFRGYLGNEERYASSFVDGWYLTGDLAYRDE 332

Query: 128 NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK 187
           +GY   VGR  D+I   G  + P E+E  L  HP V EA V G PD   GE+V A + L+
Sbjct: 333 DGYFWFVGRADDVIKTAGHLVGPFEVESALMEHPAVAEAGVIGKPDPVAGEIVKAFVSLR 392

Query: 188 PGASLT---QDDIKTYCKGK 204
           PG   +   + ++ T+ + +
Sbjct: 393 PGFEPSEELRRELLTFARQR 412

This family is most similar to acetyl-CoA synthetase. Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is only present in bacteria. Length = 443

>gnl|CDD|184022 PRK13391, PRK13391, acyl-CoA synthetase; Provisional

 Score = 79.7 bits (197), Expect = 1e-17
 Identities = 46/131 (35%), Positives = 64/131 (48%), Gaps = 9/131 (6%)

Query: 64  RDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE----NDEWFPS 119
           R  FG  H    ++D  G  +P G  G + + G      Y  +  K  E    +  W   
Sbjct: 332 RAMFGDLH----ILDDDGAELPPGEPGTIWFEG-GRPFEYLNDPAKTAEARHPDGTWSTV 386

Query: 120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEV 179
           GD   + E+GY  +  R   +II GG NI P+E E +L THP V +A V+GVP+E LGE 
Sbjct: 387 GDIGYVDEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEE 446

Query: 180 VVANIELKPGA 190
           V A ++   G 
Sbjct: 447 VKAVVQPVDGV 457

Length = 511

>gnl|CDD|235279 PRK04319, PRK04319, acetyl-CoA synthetase; Provisional

 Score = 79.6 bits (197), Expect = 1e-17
 Identities = 42/118 (35%), Positives = 62/118 (52%), Gaps = 4/118 (3%)

Query: 76  VVDKKGNIVPMGMCGEVCYR-GYNVML-GYYGEENKILE--NDEWFPSGDFFILHENGYG 131
           +VD +GN +P    G +  + G+  M+ G +    K       +W+ SGD   + E+GY 
Sbjct: 389 IVDDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAYMDEDGYF 448

Query: 132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
              GR+ D+I   GE + P E+E  L  HP V EA V G PD   GE++ A + L+PG
Sbjct: 449 WFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPG 506

Length = 570

>gnl|CDD|213320 cd05973, MACS_like_2, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 78.3 bits (193), Expect = 4e-17
 Identities = 60/224 (26%), Positives = 88/224 (39%), Gaps = 46/224 (20%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSP-------- 57
           + +   T   G+PT Y  L+++       +       SS      AG P +P        
Sbjct: 174 LERLGVTNFAGSPTAYRMLMAAGADAAARIKLKLRVASS------AGEPLNPEVVRWFQA 227

Query: 58  TLFNKIRDTFG-------------IKHLI-------------VKVVDKKGNIVPMGMCGE 91
            L   I D +G             + H +             + V+D  G  +  G  G+
Sbjct: 228 NLGVTIHDHYGQTETGMPVGNHHALAHEVRAGSMGLPLPGYRIAVLDDDGQPLADGEPGQ 287

Query: 92  VCYRGYNVML----GYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGG 145
           +     +  L    GY+ +  K  E     W+ +GD     E+GY   +GR  D+II  G
Sbjct: 288 LAIDVASSPLLWFSGYWDDPEKTAELIAGRWYVTGDLVERDEDGYFWFIGRADDVIISAG 347

Query: 146 ENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
             I P ++E  L  HP V EA V GVPD   GE+V A + LK G
Sbjct: 348 YRIGPFDVESALLEHPAVAEAAVVGVPDPLRGEIVKAFVVLKEG 391

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 440

>gnl|CDD|215137 PLN02246, PLN02246, 4-coumarate--CoA ligase

 Score = 77.3 bits (191), Expect = 1e-16
 Identities = 44/132 (33%), Positives = 73/132 (55%), Gaps = 6/132 (4%)

Query: 74  VKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGE----ENKILENDEWFPSGDFFILHEN 128
           +K+VD + G  +P    GE+C RG  +M GY  +     N I + D W  +GD   + ++
Sbjct: 367 LKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTI-DKDGWLHTGDIGYIDDD 425

Query: 129 GYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKP 188
               +V R+K++I   G  + P E+E +L +HP + +A V  + DE  GEV VA +    
Sbjct: 426 DELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSN 485

Query: 189 GASLTQDDIKTY 200
           G+ +T+D+IK +
Sbjct: 486 GSEITEDEIKQF 497

Length = 537

>gnl|CDD|235908 PRK07008, PRK07008, long-chain-fatty-acid--CoA ligase; Validated

 Score = 77.1 bits (190), Expect = 1e-16
 Identities = 49/147 (33%), Positives = 74/147 (50%), Gaps = 14/147 (9%)

Query: 64  RDTFGIKHLIVKVVDKKGNIVPM-GMC-GEVCYRGYNVMLGYYGEENKILENDEWFPSGD 121
           R  +G+    +K+V   G  +P  G   G++  RG  V+  Y+  +   L  D WFP+GD
Sbjct: 360 RVIYGVD---MKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDASPLV-DGWFPTGD 415

Query: 122 FFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVP----DERLG 177
              +  +G+ Q+  R KD+I  GGE I   +IE V   HP V EA          DER  
Sbjct: 416 VATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPL 475

Query: 178 EVVVANIELKPGASLTQDDIKTYCKGK 204
            VVV     +PGA +T++++  + +GK
Sbjct: 476 LVVV----KRPGAEVTREELLAFYEGK 498

Length = 539

>gnl|CDD|236096 PRK07787, PRK07787, acyl-CoA synthetase; Validated

 Score = 77.0 bits (190), Expect = 1e-16
 Identities = 43/115 (37%), Positives = 59/115 (51%), Gaps = 6/115 (5%)

Query: 74  VKVVDKKGNIVPMG--MCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHEN 128
            ++VD+ G  VP      GE+  RG  +  GY    +        D WF +GD  ++  +
Sbjct: 304 TRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAVVDPD 363

Query: 129 GYGQVVGRIK-DIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVA 182
           G  ++VGR   D+I  GG  I   EIE  L  HP V EA V GVPD+ LG+ +VA
Sbjct: 364 GMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVA 418

Length = 471

>gnl|CDD|236403 PRK09192, PRK09192, acyl-CoA synthetase; Validated

 Score = 77.0 bits (190), Expect = 1e-16
 Identities = 36/117 (30%), Positives = 66/117 (56%), Gaps = 6/117 (5%)

Query: 73  IVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEE--NKILENDEWFPSGDFFILHENGY 130
            +++ ++ G  +P  + G +C RG ++M GY+ +E    +L  D W  +GD   L  +GY
Sbjct: 395 EIEIRNEAGMPLPERVVGHICVRGPSLMSGYFRDEESQDVLAADGWLDTGDLGYL-LDGY 453

Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVV--EAQVYGVPDERLGEVVVANIE 185
             + GR KD+II  G NI P++IE++ +  P++   +A  + +  E  GE +V  ++
Sbjct: 454 LYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFSIAQEN-GEKIVLLVQ 509

Length = 579

>gnl|CDD|236071 PRK07638, PRK07638, acyl-CoA synthetase; Validated

 Score = 76.7 bits (189), Expect = 1e-16
 Identities = 66/236 (27%), Positives = 91/236 (38%), Gaps = 59/236 (25%)

Query: 9   EKCTVLYGTPTMY-------------VDLISS--------IQPLTEEMPNI-------AE 40
           E  +V+Y  PTM              + +ISS         + +    P         A 
Sbjct: 230 ENISVMYTVPTMLESLYKENRVIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGAS 289

Query: 41  ELSSPVIALT----------AGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCG 90
           ELS  V AL            G P                 + V++ ++ G  V  G  G
Sbjct: 290 ELSF-VTALVDEESERRPNSVGRPFHN--------------VQVRICNEAGEEVQKGEIG 334

Query: 91  EVCYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENI 148
            V  +     +GY        E   D W    D     E G+  +VGR K++I+ GG NI
Sbjct: 335 TVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYEDEEGFIYIVGREKNMILFGGINI 394

Query: 149 IPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
            P+EIE VL  HP V E  V GVPD   GE  VA I+     S T+  +K++C  +
Sbjct: 395 FPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIK----GSATKQQLKSFCLQR 446

Length = 487

>gnl|CDD|213317 cd05970, MACS_AAE_MA_like, Medium-chain acyl-CoA synthetase (MACS) of AAE_MA like

 Score = 76.7 bits (189), Expect = 2e-16
 Identities = 71/239 (29%), Positives = 100/239 (41%), Gaps = 54/239 (22%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           I K   T     PT+Y  LI       E++     +LSS     TAG P +P +FN  ++
Sbjct: 272 IEKYGVTTFCAPPTIYRFLIK------EDLSKY--DLSSLRYCTTAGEPLNPEVFNTFKE 323

Query: 66  TFGIKHL--------------------------------IVKVVDKKGNIVPMGMCGEVC 93
             GIK +                                 + ++D  G    +G  GE+ 
Sbjct: 324 KTGIKLMEGFGQTETTLTIATFPWMEPKPGSMGKPSPGYDIDIIDPDGKSCEVGEEGEIV 383

Query: 94  YR---GYNVML--GYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
            R   G  + L  GYY +  +  E  +D ++ +GD   + E+GY   VGR  D+I   G 
Sbjct: 384 IRTSDGKPLGLFMGYYRDPERTAEVWHDGYYHTGDTAWMDEDGYLWFVGRADDLIKSSGY 443

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL----KPGASLT---QDDIK 198
            I P E+E  L  HP V+E  V GVPD   G+VV A I L    +P   L    QD +K
Sbjct: 444 RIGPFEVESALIQHPAVLECAVTGVPDPIRGQVVKATIVLTKGYEPSEELKKELQDHVK 502

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This family of MACS enzymes is found in archaea and bacteria. It is represented by the acyl-adenylating enzyme from Methanosarcina acetivorans (AAE_MA). AAE_MA is most active with propionate, butyrate, and the branched analogs: 2-methyl-propionate, butyrate, and pentanoate. The specific activity is weaker for smaller or larger acids. Length = 537

>gnl|CDD|237374 PRK13388, PRK13388, acyl-CoA synthetase; Provisional

 Score = 76.6 bits (189), Expect = 2e-16
 Identities = 33/101 (32%), Positives = 47/101 (46%), Gaps = 2/101 (1%)

Query: 102 GYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT 159
           GYY       E      + SGD      +G+    GR  D +   GEN+    IE +L  
Sbjct: 365 GYYNNPEATAERMRHGMYWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLR 424

Query: 160 HPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTY 200
           HP +    VY VPDER+G+ V+A + L+ GA+   D    +
Sbjct: 425 HPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDAFAAF 465

Length = 540

>gnl|CDD|236120 PRK07867, PRK07867, acyl-CoA synthetase; Validated

 Score = 76.3 bits (188), Expect = 2e-16
 Identities = 41/147 (27%), Positives = 54/147 (36%), Gaps = 20/147 (13%)

Query: 52  GAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGE-VCYRGYNVMLGYYGEENKI 110
           G  C P                         +      GE V   G     GYY +    
Sbjct: 332 GTECPPAED-----------------ADGRLLNADEAIGELVNTAGPGGFEGYYNDPEAD 374

Query: 111 LEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQV 168
            E      + SGD      +GY    GR+ D +   GEN+    IE +L  +PD  E  V
Sbjct: 375 AERMRGGVYWSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAV 434

Query: 169 YGVPDERLGEVVVANIELKPGASLTQD 195
           Y VPD  +G+ V+A + L PGA    D
Sbjct: 435 YAVPDPVVGDQVMAALVLAPGAKFDPD 461

Length = 529

>gnl|CDD|213294 cd05928, MACS_euk, Eukaryotic Medium-chain acyl-CoA synthetase (MACS or ACSM)

 Score = 75.6 bits (186), Expect = 3e-16
 Identities = 42/122 (34%), Positives = 61/122 (50%), Gaps = 7/122 (5%)

Query: 74  VKVVDKKGNIVPMGMCGEVCY-----RGYNVMLGYYGEENKI--LENDEWFPSGDFFILH 126
           V+++D  GN++P G  G++       R + +   Y     K       +++ +GD  I+ 
Sbjct: 354 VQIIDDNGNVLPPGTEGDIGIRVKPTRPFCLFSCYVDNPEKTAATIRGDFYITGDRGIMD 413

Query: 127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL 186
           E+GY   VGR  D+I   G  I P E+E  L  HP VVE+ V   PD   GEVV A + L
Sbjct: 414 EDGYFWFVGRADDVINSSGYRIGPFEVESALIEHPAVVESAVVSSPDPIRGEVVKAFVVL 473

Query: 187 KP 188
            P
Sbjct: 474 AP 475

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. The acyl-CoA is a key intermediate in many important biosynthetic and catabolic processes. MACS enzymes are localized to mitochondria. Two murine MACS family proteins are found in liver and kidney. In rodents, a MACS member is detected particularly in the olfactory epithelium and is called O-MACS. O-MACS demonstrates substrate preference for the fatty acid lengths of C6-C12. Length = 530

>gnl|CDD|213306 cd05940, FATP_FACS, Fatty acid transport proteins (FATP) play dual roles as fatty acid transporters and its activation enzymes

 Score = 74.6 bits (184), Expect = 8e-16
 Identities = 42/120 (35%), Positives = 53/120 (44%), Gaps = 11/120 (9%)

Query: 84  VPMGMCGEVCYRGY--NVMLGYYGE---ENKILEN-----DEWFPSGDFFILHENGYGQV 133
           VP G  G +       N   GY  +   E KIL +     D +F +GD       GY   
Sbjct: 277 VPPGEVGLLLGEITDRNPFDGYTDDEATEKKILRDVFKKGDAYFNTGDLVRRDGFGYFYF 336

Query: 134 VGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERL-GEVVVANIELKPGASL 192
           V R+ D     GEN+   E+E VL  HP V EA VYGV      G   +A + L PGA+ 
Sbjct: 337 VDRLGDTFRWKGENVSTTEVEEVLAKHPGVEEANVYGVEVPGTEGRAGMAALTLAPGAAF 396

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. At least five copies of FATPs are identified in mammalian cells. This family also includes prokaryotic FATPs. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 444

>gnl|CDD|236019 PRK07445, PRK07445, O-succinylbenzoic acid--CoA ligase; Reviewed

 Score = 74.6 bits (184), Expect = 8e-16
 Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 3/82 (3%)

Query: 101 LGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTH 160
           LGYY +   IL++   F + D   L   GY  ++GR    II GGEN+ P E+E  +   
Sbjct: 313 LGYYPQ---ILDSQGIFETDDLGYLDAQGYLHILGRNSQKIITGGENVYPAEVEAAILAT 369

Query: 161 PDVVEAQVYGVPDERLGEVVVA 182
             V +  V G+PD   GEVV A
Sbjct: 370 GLVQDVCVLGLPDPHWGEVVTA 391

Length = 452

>gnl|CDD|236108 PRK07824, PRK07824, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 73.5 bits (181), Expect = 1e-15
 Identities = 31/85 (36%), Positives = 49/85 (57%), Gaps = 1/85 (1%)

Query: 116 WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDER 175
           WF + D   L  +G   V+GR  D I  GG  ++P+ +E  L THP V +  V+G+PD+R
Sbjct: 235 WFRTDDLGALD-DGVLTVLGRADDAISTGGLTVLPQVVEAALATHPAVADCAVFGLPDDR 293

Query: 176 LGEVVVANIELKPGASLTQDDIKTY 200
           LG+ VVA +    G + T + ++ +
Sbjct: 294 LGQRVVAAVVGDGGPAPTLEALRAH 318

Length = 358

>gnl|CDD|235722 PRK06164, PRK06164, acyl-CoA synthetase; Validated

 Score = 74.0 bits (182), Expect = 1e-15
 Identities = 50/180 (27%), Positives = 74/180 (41%), Gaps = 35/180 (19%)

Query: 43  SSPVIALTA---------------GAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMG 87
           SS V AL A               G P SP    + RD               G ++P G
Sbjct: 328 SSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQD------------GALLPDG 375

Query: 88  MCGEVCYRGYNVMLGYYGEEN---KILENDEWFPSGDF-FILHENGYGQVVGRIKDIIIR 143
             GE+  R  ++M GY    +   + L +D +F +GD  +   +  +     R+ D +  
Sbjct: 376 ESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGDLGYTRGDGQF-VYQTRMGDSLRL 434

Query: 144 GGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE-VVVANIELKPGASLTQDDIKTYCK 202
           GG  + P EIE+ L+  P V  AQV G    R G+ V VA +    GAS  +  +   C+
Sbjct: 435 GGFLVNPAEIEHALEALPGVAAAQVVGA--TRDGKTVPVAFVIPTDGASPDEAGLMAACR 492

Length = 540

>gnl|CDD|215576 PLN03102, PLN03102, acyl-activating enzyme; Provisional

 Score = 73.1 bits (179), Expect = 3e-15
 Identities = 45/138 (32%), Positives = 67/138 (48%), Gaps = 8/138 (5%)

Query: 68  GIKHLIVKVVDKKGN----IVPMG--MCGEVCYRGYNVMLGYYGEENKILE--NDEWFPS 119
           G+  L +  VD K       VP      GE+  +G ++M GY        E     W  +
Sbjct: 365 GVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAFKHGWLNT 424

Query: 120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEV 179
           GD  ++H +G+ ++  R KDIII GGENI   E+E VL  +P V+E  V  +P    GE 
Sbjct: 425 GDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGET 484

Query: 180 VVANIELKPGASLTQDDI 197
             A + L+ G +  +D +
Sbjct: 485 PCAFVVLEKGETTKEDRV 502

Length = 579

>gnl|CDD|213283 cd05915, ttLC_FACS_like, Fatty acyl-CoA synthetases similar to LC-FACS from Thermus thermophiles

 Score = 70.9 bits (173), Expect = 1e-14
 Identities = 44/158 (27%), Positives = 71/158 (44%), Gaps = 10/158 (6%)

Query: 54  PCSPTLFNKIRDTFGIKHLI--VKVVDKKGNIVPMG--MCGEVCYRGYNVMLGYYGEENK 109
                L  K +   G+   +  ++V D++G  VP      GEV  +G  +  GYYG E  
Sbjct: 323 SEEEKLTLKAKT--GLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEA 380

Query: 110 ILEN---DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEA 166
                  D +F +GD  +  E GY ++  R+KD+I  GGE I   ++E  L  HP V EA
Sbjct: 381 TRSALTPDGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEA 440

Query: 167 QVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
            V  +P  +  E  +A +  +     T +++  +    
Sbjct: 441 AVVAIPHPKWQERPLAVVVPRG-EKPTPEELNEHLLKA 477

This family includes fatty acyl-CoA synthetases that can activate medium-chain to long-chain fatty acids. They catalyze the ATP-dependent acylation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. The fatty acyl-CoA synthetase from Thermus thermophiles in this family has been shown to catalyze the long-chain fatty acid, myristoyl acid, while another member in this family, the AlkK protein identified in Pseudomonas oleovorans, targets medium chain fatty acids. This family also includes an uncharacterized subgroup of FACS. Length = 509

>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)

 Score = 70.8 bits (174), Expect = 2e-14
 Identities = 42/125 (33%), Positives = 60/125 (48%), Gaps = 7/125 (5%)

Query: 69  IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEE---NKILENDEWFPSGDFFIL 125
           I    +++VD  G ++P    G +  +G NV  GYY       K +  D W  +GD   L
Sbjct: 320 IDGCEIRIVDDAGEVLPDRTIGHIQIKGDNVTSGYYNNPEATKKSITPDGWLKTGDLGFL 379

Query: 126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVY--GVPDERLG-EVVVA 182
             NG   + GR KDIII  G+N  P +IE V +    +   +V   GV DE+   E VV 
Sbjct: 380 R-NGRLVITGRAKDIIIVNGQNYYPHDIERVAEQVEGIKLGRVAACGVYDEKEQSEEVVI 438

Query: 183 NIELK 187
            +E +
Sbjct: 439 FVEYR 443

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499

>gnl|CDD|213321 cd05974, MACS_like_1, Uncharacterized subfamily of medium-chain acyl-CoA synthetase (MACS)

 Score = 70.1 bits (172), Expect = 3e-14
 Identities = 42/140 (30%), Positives = 64/140 (45%), Gaps = 10/140 (7%)

Query: 74  VKVVDKKGNIVPMGMCGEVC----YRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHE 127
           V ++D +G  +P+   GE+      R   +MLGY G+  K        ++ +GD     E
Sbjct: 262 VVLLDDEGKEIPVTE-GEIALDLGDRPIGLMLGYMGDPEKTAAAFRGGYYRTGDKAYRDE 320

Query: 128 NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK 187
           +GY   VGR  D+       I P E+E  L  HP V EA V   PD     V  A I LK
Sbjct: 321 DGYLWFVGRADDVFKSSDYRISPFEVESALLEHPAVAEAAVVPSPDPIRLAVPKAYIVLK 380

Query: 188 PGASLTQD---DIKTYCKGK 204
           PG   +++   ++  + + +
Sbjct: 381 PGYEPSRELALELFAHVRER 400

MACS catalyzes the two-step activation of medium chain fatty acids (containing 4-12 carbons). The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. MACS enzymes are localized to mitochondria. Length = 433

>gnl|CDD|213314 cd05967, PrpE, Propionyl-CoA synthetase (PrpE)

 Score = 69.6 bits (171), Expect = 4e-14
 Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 8/132 (6%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRG---YNVMLGYYGEE----NKILENDE-WFPSGDFFIL 125
           V+V+D+ G  +  G  G +  +       +L  +G++       L     ++ +GD    
Sbjct: 412 VQVLDETGEELGPGELGNIVIKLPLPPGCLLTLWGDDERFKKLYLNKFPGYYDTGDSGYK 471

Query: 126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIE 185
            E+GY  V+GR  D+I   G  +   E+E  +  HPDV E  V GV DE  G+V +  + 
Sbjct: 472 DEDGYLFVMGRTDDVINVAGHRLSTGEMEESVLKHPDVAECAVVGVRDELKGQVPLGLVV 531

Query: 186 LKPGASLTQDDI 197
           LK    +  D +
Sbjct: 532 LKDDCKIDADQL 543

PrpE catalyzes the first step of the 2-methylcitric acid cycle for propionate catabolism. It activates propionate to propionyl-CoA in a two-step reaction, which proceeds through a propionyl-AMP intermediate and requires ATP and Mg2+. In Salmonella enterica, the PrpE protein is required for growth of S. enterica on propionate and can substitute for the acetyl-CoA synthetase (Acs) enzyme during growth on acetate. PrpE can also activate acetate, 3HP, and butyrate to their corresponding CoA-thioesters, although with less efficiency. Length = 607

>gnl|CDD|213315 cd05968, AACS_like, Uncharacterized acyl-CoA synthetase subfamily similar to Acetoacetyl-CoA synthetase

 Score = 69.2 bits (170), Expect = 5e-14
 Identities = 52/167 (31%), Positives = 77/167 (46%), Gaps = 15/167 (8%)

Query: 41  ELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVM 100
           E+S  ++      P  P  FN    + G+      VVD+ G  V  G  GE+  R     
Sbjct: 260 EISGGILGNVPIRPIKPCSFNGP--SPGMD---ADVVDEDGRPVR-GEVGELVVRAPWPG 313

Query: 101 L--GYYGEENKILEN------DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKE 152
           +  G++ +  + LE         W   GD+ ++ E+GY  ++GR  D I   G+ + P E
Sbjct: 314 MTRGFWRDPERYLETYWSRFPGVWV-HGDWALVDEDGYWYILGRSDDTIKVAGKRVGPAE 372

Query: 153 IEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKT 199
           IE VL +HP V EA   GVPD   GE +V  + LKPG + +      
Sbjct: 373 IESVLNSHPAVAEAAAIGVPDPVKGEAIVCFVVLKPGVTPSAALEAE 419

This uncharacterized acyl-CoA synthetase family is highly homologous to acetoacetyl-CoA synthetase. However, the proteins in this family exist in only bacteria and archaea. AACS is a cytosolic ligase that specifically activates acetoacetate to its coenzyme A ester by a two-step reaction. Acetoacetate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is the first step of the mevalonate pathway of isoprenoid biosynthesis via isopentenyl diphosphate. Isoprenoids are a large class of compounds found in all living organisms. Length = 474

>gnl|CDD|180289 PRK05851, PRK05851, long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

 Score = 67.1 bits (164), Expect = 3e-13
 Identities = 38/91 (41%), Positives = 49/91 (53%), Gaps = 14/91 (15%)

Query: 90  GEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENII 149
           GE+  RG ++M GY G+    ++ D+WFP+GD   L + G   V GR K++I   G NI 
Sbjct: 373 GEIEIRGASMMSGYLGQAP--IDPDDWFPTGDLGYLVDGGL-VVCGRAKELITVAGRNIF 429

Query: 150 PKEIEYVLQTHPDVVEAQVYGVPDERLGEVV 180
           P EIE         V AQV GV   R G VV
Sbjct: 430 PTEIE--------RVAAQVRGV---REGAVV 449

Length = 525

>gnl|CDD|236363 PRK09029, PRK09029, O-succinylbenzoic acid--CoA ligase; Provisional

 Score = 66.8 bits (164), Expect = 4e-13
 Identities = 35/108 (32%), Positives = 57/108 (52%), Gaps = 3/108 (2%)

Query: 89  CGEVCYRGYNVMLGYY--GEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
            GE+  RG ++ LGY+  G+   ++ ++ WF + D      NG   ++GR+ ++   GGE
Sbjct: 304 DGEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLFFSGGE 362

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ 194
            I P+EIE V+  HP V +  V  V D   G+  VA +E    A++  
Sbjct: 363 GIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDSEAAVVN 410

Length = 458

>gnl|CDD|233770 TIGR02188, Ac_CoA_lig_AcsA, acetate--CoA ligase

 Score = 66.5 bits (163), Expect = 5e-13
 Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 15/139 (10%)

Query: 67  FGIKHLIVKVVDKKGNIVPM-GMCGEVCYRGY--NVMLGYYGEENKILENDEWFP----- 118
           FGI+     VVD++GN V   G  G +  +     ++   YG+  + +  D +F      
Sbjct: 422 FGIE---PAVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFV--DTYFSPFPGY 476

Query: 119 --SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERL 176
             +GD     ++GY  + GR+ D+I   G  +   EIE  L +HP V EA V G+PD+  
Sbjct: 477 YFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIK 536

Query: 177 GEVVVANIELKPGASLTQD 195
           G+ + A + LK G     +
Sbjct: 537 GQAIYAFVTLKDGYEPDDE 555

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by pfam00501. Length = 625

>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)

 Score = 66.1 bits (162), Expect = 7e-13
 Identities = 53/219 (24%), Positives = 83/219 (37%), Gaps = 47/219 (21%)

Query: 2   ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFN 61
           I+  I   K T+L GTPT       +  P         E+ SS  + +            
Sbjct: 227 IAELIRDYKATILCGTPTFLRGYARNAHP---------EDFSSLRLVVAGAEKLPEATRE 277

Query: 62  KIRDTFGIK----------------------------HLI----VKVVDKKGNI-VPMGM 88
              + FGI+                              +    V++V  + +  +P+G 
Sbjct: 278 LFEEKFGIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIEVRIVSPETHEELPIGE 337

Query: 89  CGEVCYRGYNVMLGYYGEENK----ILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRG 144
            G +  RG NVM GY   E K     +  D W+ +GD   + E+G+  +VGR+K     G
Sbjct: 338 GGLLLVRGPNVMSGYLNNEEKTSEVEVLGDGWYDTGDIGKIDEDGFLTIVGRLKRFAKIG 397

Query: 145 GENIIPKEIEYVLQTH-PDVVEAQVYGVPDERLGEVVVA 182
           GE +    +E +L    P+        VPDE+ GE +V 
Sbjct: 398 GEMVSLTAVEELLSEILPEDSLHAAVEVPDEKKGEKIVL 436

Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489

>gnl|CDD|233803 TIGR02262, benz_CoA_lig, benzoate-CoA ligase family

 Score = 66.0 bits (161), Expect = 8e-13
 Identities = 55/230 (23%), Positives = 92/230 (40%), Gaps = 44/230 (19%)

Query: 12  TVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK- 70
           T+ YG PT+Y  +++        +P  AE+     +  +AG      +  + +  FG+  
Sbjct: 254 TIFYGVPTLYAAMLAD-----PNLP--AEDQVRLRLCTSAGEALPAEVGQRWQARFGVDI 306

Query: 71  ----------HLI---------------------VKVVDKKGNIVPMGMCGEVCYRGYNV 99
                     H+                      +++V   G  V  G  GE+   G + 
Sbjct: 307 VDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLISGPSS 366

Query: 100 MLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVL 157
              Y+    K  +    EW  SGD ++ +++G     GR  D++   G  + P EIE  L
Sbjct: 367 ATMYWNNRAKTRDTFQGEWTRSGDKYVRNDDGSYTYAGRTDDMLKVSGIYVSPFEIESAL 426

Query: 158 QTHPDVVEAQVYGVPDERLGEVVVANIELKPGA---SLTQDDIKTYCKGK 204
             HP V+EA V GV DE       A I L+PG    +  + ++K + K +
Sbjct: 427 IQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKDR 476

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases. Length = 508

>gnl|CDD|213313 cd05966, ACS, Acetyl-CoA synthetase (also known as acetate-CoA ligase and acetyl-activating enzyme)

 Score = 65.6 bits (161), Expect = 1e-12
 Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 12/140 (8%)

Query: 67  FGIKHLIVKVVDKKGNIVPMGMCGEVCYRGY--NVMLGYYGEENKILENDEW--FP---- 118
            G++     +VD++GN V  G+ G +  +     ++   YG+  +      +  FP    
Sbjct: 411 PGVE---PAIVDEEGNEVEGGVEGYLVIKRPWPGMLRTIYGDHER-YVKTYFSKFPGYYF 466

Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
           +GD     E+GY  ++GR+ D+I   G  +   E+E  L +HP V EA V G PDE  GE
Sbjct: 467 TGDGARRDEDGYYWILGRVDDVINVSGHRLGTAEVESALVSHPAVAEAAVVGKPDEVKGE 526

Query: 179 VVVANIELKPGASLTQDDIK 198
            + A + LK G   + +  K
Sbjct: 527 AIYAFVTLKDGVEPSDELRK 546

Acetyl-CoA synthetase (ACS) catalyzes the formation of acetyl-CoA from acetate, CoA, and ATP. Synthesis of acetyl-CoA is carried out in a two-step reaction. In the first step, the enzyme catalyzes the synthesis of acetyl-AMP intermediate from acetate and ATP. In the second step, acetyl-AMP reacts with CoA to produce acetyl-CoA. This enzyme is widely present in all living organisms. The activity of this enzyme is crucial for maintaining the required levels of acetyl-CoA, a key intermediate in many important biosynthetic and catabolic processes. Acetyl-CoA is used in the biosynthesis of glucose, fatty acids, and cholesterol. It can also be used in the production of energy in the citric acid cycle. Eukaryotes typically have two isoforms of acetyl-CoA synthetase, a cytosolic form involved in biosynthetic processes and a mitochondrial form primarily involved in energy generation. Length = 602

>gnl|CDD|139538 PRK13390, PRK13390, acyl-CoA synthetase; Provisional

 Score = 65.4 bits (159), Expect = 1e-12
 Identities = 44/131 (33%), Positives = 57/131 (43%), Gaps = 9/131 (6%)

Query: 64  RDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDE-----WFP 118
           R   G  H    + D  GN +P G  G V +    +   Y  +  K           W  
Sbjct: 327 RSVLGDLH----ICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTT 382

Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
            GD   + E+GY  +  R   +II GG NI P+E E  L  HP V +  V GVPD  +GE
Sbjct: 383 VGDLGSVDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGE 442

Query: 179 VVVANIELKPG 189
            V A I+L  G
Sbjct: 443 QVKAVIQLVEG 453

Length = 501

>gnl|CDD|213282 cd05914, FACL_like_3, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 63.8 bits (156), Expect = 3e-12
 Identities = 38/112 (33%), Positives = 61/112 (54%), Gaps = 15/112 (13%)

Query: 90  GEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRG-GENI 148
           GE+  RG ++MLGY GE       D+W+ +GD   L E GY  + GR K++II   G N+
Sbjct: 305 GEILVRG-SLMLGYLGEPPA---TDDWWATGDLGHLDEEGYLYINGRKKNLIITSFGRNV 360

Query: 149 IPKEIEYVLQTHPDVVEAQVYGVPDER--LGEVVVANIELKPGASLTQDDIK 198
            P+ +E  LQ  P + +A V+G  D +  L  ++V      P  +++ D ++
Sbjct: 361 SPEWVESELQQAPAIAQAVVFG--DAQPFLVALIV------PAPNISDDQLE 404

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 448

>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 35/95 (36%), Positives = 50/95 (52%), Gaps = 8/95 (8%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG--EEN-KILENDEWFPSGDFFILHENGY 130
           +++VD+ G ++P G  G +  RG  V  GYY   E N +    D WF +GD   LH+   
Sbjct: 385 IRIVDEDGALLPEGEVGRLQVRGPTVTSGYYRNPEANAEAFTEDGWFRTGDLGFLHD--- 441

Query: 131 GQVV--GRIKDIIIRGGENIIPKEIEYVLQTHPDV 163
           G++   GR KD+II  G N    EIE  ++  P V
Sbjct: 442 GRLTITGREKDMIIINGVNYYNHEIEAAVEQVPGV 476

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560

>gnl|CDD|213310 cd05945, DltA, D-alanine:D-alanyl carrier protein ligase (DltA)

 Score = 63.0 bits (154), Expect = 7e-12
 Identities = 43/138 (31%), Positives = 58/138 (42%), Gaps = 7/138 (5%)

Query: 71  HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENK------ILENDEWFPSGDFFI 124
            L   ++D+ G  VP G  GE+   G  V  GY     K        E   W+ +GD   
Sbjct: 280 GLRALILDEDGRPVPPGEEGELVIAGPQVSPGYLNNPEKTAKAFFQDEGQRWYRTGDLVY 339

Query: 125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANI 184
           L ++G    +GR    I   G  I  +EIE  L+  P V EA V  VP       +VA +
Sbjct: 340 LEDDGLLVYLGRKDFQIKLHGYRIELEEIEAALRALPGVEEAVVLPVPKGEKVVRLVAFV 399

Query: 185 ELKPGASLTQDDIKTYCK 202
             K GA  T+  +K   K
Sbjct: 400 VGKEGALDTK-ALKKELK 416

DltA belongs to the class I AMP-forming adenylation domain superfamily, which also includes acetyl-CoA synthetase, luciferase, and the adenylation domains of non-ribosomal synthetases. It catalyzes the two-step activation reaction of D-alanine: the formation of a substrate-AMP molecule as an intermediate, and then the transfer of the amino acid adenylate to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram-positive bacteria. Length = 447

>gnl|CDD|180293 PRK05857, PRK05857, acyl-CoA synthetase; Validated

 Score = 63.1 bits (153), Expect = 7e-12
 Identities = 35/98 (35%), Positives = 51/98 (52%), Gaps = 6/98 (6%)

Query: 100 MLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVL 157
           MLGY+    +  E   D W  +GD     E+G+  + GR  ++II GG NI P E++ + 
Sbjct: 385 MLGYWNNPERTAEVLIDGWVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIA 444

Query: 158 QTHPDVVEAQVYGVPDERLGEV----VVANIELKPGAS 191
           +    V EA  Y +PDE  G +    VVA+ EL   A+
Sbjct: 445 EGVSGVREAACYEIPDEEFGALVGLAVVASAELDESAA 482

Length = 540

>gnl|CDD|236091 PRK07768, PRK07768, long-chain-fatty-acid--CoA ligase; Validated

 Score = 61.2 bits (149), Expect = 3e-11
 Identities = 33/83 (39%), Positives = 44/83 (53%), Gaps = 2/83 (2%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDE--WFPSGDFFILHENGYG 131
           V+VVD+ G ++P    G +  RG +V  GY   +  I   D   W  +GD   L E G  
Sbjct: 371 VRVVDEDGQVLPPRGVGVIELRGESVTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEV 430

Query: 132 QVVGRIKDIIIRGGENIIPKEIE 154
            V GR+KD+II  G NI P +IE
Sbjct: 431 VVCGRVKDVIIMAGRNIYPTDIE 453

Length = 545

>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)

 Score = 60.9 bits (148), Expect = 4e-11
 Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 4/69 (5%)

Query: 90  GEVCYRGYNVMLGYYGEENKI---LENDEWFPSGDFFILHENGYGQVVGRIKDIIIR-GG 145
           GE+C  G +V +GY   E K    ++ D W  SGD   L ++G+  + GRIK++II  GG
Sbjct: 391 GEICIWGRHVFMGYLNMEEKTEEAIDEDGWLHSGDLGFLDDDGFLYITGRIKELIITAGG 450

Query: 146 ENIIPKEIE 154
           EN+ P  IE
Sbjct: 451 ENVPPVPIE 459

This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594

>gnl|CDD|213324 cd12116, A_NRPS_Ta1_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including salinosporamide A polyketide synthase

 Score = 59.5 bits (145), Expect = 1e-10
 Identities = 41/140 (29%), Positives = 60/140 (42%), Gaps = 20/140 (14%)

Query: 76  VVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFP-------------SGDF 122
           V+D+    VP G+ GE+   G  V  GY G         E F              +GD 
Sbjct: 271 VLDEDLQPVPPGVPGELYIGGDGVARGYLGRP---ELTAERFVPDPFDDPGGRLYRTGDL 327

Query: 123 FILHENGYGQVVGRIKD-IIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEV-V 180
                +G  + +GR  D + IRG   I   EIE  L+ HP V +A V  V +E  G+  +
Sbjct: 328 VRWRPDGRLEYLGRADDQVKIRG-FRIELGEIEAALRAHPGVADAVVV-VREEGPGDQRL 385

Query: 181 VANIELKPGASLTQDDIKTY 200
           VA +  K GA+   + ++  
Sbjct: 386 VAYVVPKAGAAPDAEALRAA 405

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the myxovirescin (TA) antibiotic biosynthetic gene in Myxococcus xanthus; TA production plays a role in predation. It also includes the salinosporamide A polyketide synthase which is involved in the biosynthesis of salinosporamide A, a marine microbial metabolite whose chlorine atom is crucial for potent proteasome inhibition and anticancer activity. Length = 438

>gnl|CDD|213296 cd05930, A_NRPS, The adenylation domain of nonribosomal peptide synthetases (NRPS)

 Score = 59.0 bits (144), Expect = 2e-10
 Identities = 51/247 (20%), Positives = 86/247 (34%), Gaps = 58/247 (23%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           + + + TVL+  P++        + L + +      L S  + +  G      L  + R+
Sbjct: 180 LREHRITVLHLVPSLL-------RALLDALE--PAALPSLRLVIVGGEALPAELVRRWRE 230

Query: 66  TFGIKHLI-------------------------------------VKVVDKKGNIVPMGM 88
            F    L+                                     V V+D+    VP+G+
Sbjct: 231 LFPGARLVNAYGPTETTVDVTYHEVDPDDLDGGSVPIGRPIANTRVYVLDEDLRPVPVGV 290

Query: 89  CGEVCYRGYNVMLGYYGEE----NKILENDEWFP------SGDFFILHENGYGQVVGRIK 138
            GE+   G  V  GY         + + +    P      +GD      +G  + +GR  
Sbjct: 291 PGELYIGGAGVARGYLNRPELTAERFVPDPFGGPGERLYRTGDLARWLPDGNLEFLGRAD 350

Query: 139 D-IIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDI 197
           D + IRG   I   EIE  L  HP V EA V    D    + +VA +    GA L   ++
Sbjct: 351 DQVKIRG-YRIELGEIEAALLAHPGVREAVVVAREDGAGEKRLVAYVVPAAGAELDAAEL 409

Query: 198 KTYCKGK 204
           + +   +
Sbjct: 410 RAFLAER 416

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester bond to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 445

>gnl|CDD|234677 PRK00174, PRK00174, acetyl-CoA synthetase; Provisional

 Score = 58.2 bits (142), Expect = 4e-10
 Identities = 42/147 (28%), Positives = 63/147 (42%), Gaps = 26/147 (17%)

Query: 67  FGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNV--------MLGYYGEENKILENDEWFP 118
            GI+     VVD++GN +     G     G  V        M   YG+  + +    +F 
Sbjct: 431 PGIQ---PAVVDEEGNPLE----GGE--GGNLVIKDPWPGMMRTIYGDHERFV--KTYFS 479

Query: 119 -------SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGV 171
                  +GD     E+GY  + GR+ D++   G  +   EIE  L  HP V EA V G 
Sbjct: 480 TFKGMYFTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGR 539

Query: 172 PDERLGEVVVANIELKPGASLTQDDIK 198
           PD+  G+ + A + LK G   + +  K
Sbjct: 540 PDDIKGQGIYAFVTLKGGEEPSDELRK 566

Length = 637

>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

 Score = 56.8 bits (138), Expect = 9e-10
 Identities = 35/124 (28%), Positives = 60/124 (48%), Gaps = 9/124 (7%)

Query: 90  GEVCYRGYNVMLGYYGEENK---ILENDEWFPSGDFFILHENGYGQVVGRIKDII-IRGG 145
           GE+C RG NV  GYY    K     + D WF +GD      +G  +++ R K++  +  G
Sbjct: 351 GEICIRGPNVFKGYYKNPEKTAEAFDEDGWFHTGDIGEWLPDGTLKIIDRKKNLFKLSQG 410

Query: 146 ENIIPKEIEYVLQTHPDVVEAQVYGVPDE-RLGEVVVANIE-LKPGAS---LTQDDIKTY 200
           E +  +++E + ++ P V +  VYG   +  L  +VV + + L+  A+       D +  
Sbjct: 411 EYVALEKLENIYKSSPLVDQICVYGDSLKSFLVAIVVPDEDVLEKWAAENGGGGGDFEEL 470

Query: 201 CKGK 204
           C  K
Sbjct: 471 CNNK 474

The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539

>gnl|CDD|213322 cd12114, A_NRPS_TlmIV_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Streptoalloteichus tallysomycin biosynthesis genes

 Score = 56.8 bits (138), Expect = 1e-09
 Identities = 35/134 (26%), Positives = 57/134 (42%), Gaps = 12/134 (8%)

Query: 76  VVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENK-------ILENDEWFPSGDFFILHEN 128
           V+D+ G   P  + GE+   G  V LGY+G+              +  + +GD      +
Sbjct: 313 VLDEDGRDCPDWVPGELYIGGVGVALGYWGDPELTAERFITHRTGERLYRTGDLGRYRPD 372

Query: 129 GYGQVVGRIKD--IIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL 186
           G  + +GR  D  + IR G  +   EIE  L  HP V  A V  V D    + + A +  
Sbjct: 373 GTIEFLGR-ADHQVKIR-GYRVELGEIEAALARHPGVQRAVVVVVGDGG-AKALAAFVVA 429

Query: 187 KPGASLTQDDIKTY 200
           + GA++    ++  
Sbjct: 430 EDGAAVDAAVLRAA 443

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the TLM biosynthetic gene cluster from Streptoalloteichus that consists of nine NRPS genes; the N-terminal module of TlmVI (NRPS-5) and the starter module of BlmVI (NRPS-5) are comprised of the acyl CoA ligase (AL) and acyl carrier protein (ACP)-like domains, which are thought to be involved in the biosynthesis of the beta-aminoalaninamide moiety. Length = 476

>gnl|CDD|211788 TIGR03098, ligase_PEP_1, acyl-CoA ligase (AMP-forming), exosortase A-associated

 Score = 56.7 bits (137), Expect = 1e-09
 Identities = 42/149 (28%), Positives = 63/149 (42%), Gaps = 14/149 (9%)

Query: 68  GIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFP--------- 118
            I +  V V+ + G+    G  GE+ +RG  V +GY+ +  K  E     P         
Sbjct: 335 AIPNAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPFPGELHLP 394

Query: 119 -----SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPD 173
                SGD     E G+   VGR  ++I   G  + P E+E V      V EA  +GVPD
Sbjct: 395 ELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPD 454

Query: 174 ERLGEVVVANIELKPGASLTQDDIKTYCK 202
             LG+ +V  +    G  L +  +   C+
Sbjct: 455 PTLGQAIVLVVTPPGGEELDRAALLAECR 483

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system , specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present. Length = 517

>gnl|CDD|236217 PRK08279, PRK08279, long-chain-acyl-CoA synthetase; Validated

 Score = 55.7 bits (135), Expect = 3e-09
 Identities = 36/95 (37%), Positives = 43/95 (45%), Gaps = 12/95 (12%)

Query: 107 ENKILEN-----DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHP 161
           E KIL +     D WF +GD       G+ Q V R+ D     GEN+   E+E  L   P
Sbjct: 426 EKKILRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFP 485

Query: 162 DVVEAQVYGVP----DERLGEVVVANIELKPGASL 192
            V EA VYGV     D R G   +A I L  GA  
Sbjct: 486 GVEEAVVYGVEVPGTDGRAG---MAAIVLADGAEF 517

Length = 600

>gnl|CDD|180167 PRK05620, PRK05620, long-chain-fatty-acid--CoA ligase; Validated

 Score = 55.2 bits (133), Expect = 4e-09
 Identities = 28/80 (35%), Positives = 42/80 (52%)

Query: 114 DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPD 173
           D W  +GD   +  +G+  +  R +D+I  GGE I   ++E  +   P+VVE  V G PD
Sbjct: 429 DGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPD 488

Query: 174 ERLGEVVVANIELKPGASLT 193
           ++ GE  +A   L PG   T
Sbjct: 489 DKWGERPLAVTVLAPGIEPT 508

Length = 576

>gnl|CDD|131369 TIGR02316, propion_prpE, propionate--CoA ligase

 Score = 53.8 bits (129), Expect = 1e-08
 Identities = 29/80 (36%), Positives = 40/80 (50%)

Query: 117 FPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERL 176
           + S D+ I  E+GY  ++GR  D+I   G  +  +EIE  + +HP V E  V GV DE  
Sbjct: 474 YSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELK 533

Query: 177 GEVVVANIELKPGASLTQDD 196
           G+V V    LK   S     
Sbjct: 534 GQVAVVFAILKESDSAGDAH 553

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate. Length = 628

>gnl|CDD|213325 cd12117, A_NRPS_Srf_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Bacillus subtilis termination module Surfactin (SrfA-C)

 Score = 52.2 bits (126), Expect = 3e-08
 Identities = 38/145 (26%), Positives = 65/145 (44%), Gaps = 15/145 (10%)

Query: 69  IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGE---------ENKILENDEWFPS 119
           I +  V ++D++G  VP+G+ GE+   G  + LGY             +     +  + +
Sbjct: 303 IPNTTVYILDEEGQPVPIGVPGELYVGGDGLALGYLNRPELTAERFVPDPFGPGERLYRT 362

Query: 120 GDFFILHENGYGQVVGRIKDII-IRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
           GD      +G  + +GRI   + IR G  I   EIE  L  HP V EA V  V ++  G+
Sbjct: 363 GDLARWRPDGNIEFLGRIDRQVKIR-GFRIELGEIEQALLQHPGVREAAVL-VREDAAGD 420

Query: 179 V-VVANIELKPGASLTQDDIKTYCK 202
             +VA   +    +L   +++ +  
Sbjct: 421 KRLVAY--VVARGALDAAELRAHLA 443

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the adenylation domain of the Bacillus subtilis termination module (Surfactin domain, SrfA-C) which recognizes a specific amino acid building block, which is then activated and transferred to the terminal thiol of the 4'-phosphopantetheine (Ppan) arm of the downstream peptidyl carrier protein (PCP) domain. Length = 474

>gnl|CDD|223951 COG1020, EntF, Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

 Score = 51.9 bits (124), Expect = 5e-08
 Identities = 32/200 (16%), Positives = 59/200 (29%), Gaps = 46/200 (23%)

Query: 2   ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFN 61
           +   +  +  TVL   P +   L+ +                     L+ G      L  
Sbjct: 449 LLELLEAQGITVLLLVPLLLRLLLLAALAPDL-----ISPCERLRQLLSGGEALPLALVQ 503

Query: 62  KIRDTFGIKHLI------------------------------------VKVVDKKGNIVP 85
           ++     +   +                                    + ++D+    +P
Sbjct: 504 RLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLP 563

Query: 86  MGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDII- 141
           +G+ GE+   G  + LGY    +   E       + +GD      +G  + +GR    + 
Sbjct: 564 LGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDLARPLADGALEYLGRKDSQVK 623

Query: 142 IRGGENIIPKEIEYVLQTHP 161
           IR G  I   EIE  L   P
Sbjct: 624 IR-GFRIELGEIEAALAEQP 642

Length = 642

>gnl|CDD|182517 PRK10524, prpE, propionyl-CoA synthetase; Provisional

 Score = 51.5 bits (124), Expect = 6e-08
 Identities = 27/76 (35%), Positives = 39/76 (51%)

Query: 121 DFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVV 180
           D+ I   +GY  ++GR  D+I   G  +  +EIE  + +HP V E  V GV D   G+V 
Sbjct: 479 DWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVA 538

Query: 181 VANIELKPGASLTQDD 196
           VA +  K   SL   +
Sbjct: 539 VAFVVPKDSDSLADRE 554

Length = 629

>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 25/154 (16%)

Query: 42  LSSPVIALTAGAPCSPTL---FNKI----------RDTFGIKHLIVKVVDKKGNI-VPMG 87
           L    +A +  AP  P L   + K+           + F    L      + G +  P+ 
Sbjct: 274 LDQARLAGSGAAPMPPALIAWYRKLGLPICEGYGMTENFAYSTLNYPGDRRIGTVGKPIP 333

Query: 88  MC-------GEVCYRGYNVMLGYYGEENKILEN---DEWFPSGDFFILHENGYGQVVGRI 137
                    GE+  R   +M GYY +  K  E    D W  +GD   + E+G+ ++ GR+
Sbjct: 334 GVELKISEDGEILIRSPGLMSGYYKDPEKTAEAFTEDGWLHTGDKGEIDEDGFLKITGRV 393

Query: 138 KDII-IRGGENIIPKEIEYVLQTHPDVVEAQVYG 170
           K++     G+ + P  IE +L  +P V +  V G
Sbjct: 394 KELFKTSKGKYVAPAPIENLLSANPHVEQVCVVG 427

The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504

>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

 Score = 50.3 bits (121), Expect = 2e-07
 Identities = 36/118 (30%), Positives = 53/118 (44%), Gaps = 9/118 (7%)

Query: 73   IVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGEENK----ILENDE--WFPSGDFFIL 125
             V++VD +    +P G  G +   G  VM GY G+  K    I + D   W+ +GD   L
Sbjct: 970  AVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDIDGIGWYVTGDKGHL 1029

Query: 126  HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT--HPDVVEAQVYGVPDERLGEVVV 181
             E+G+  +  R       GGE +    +E  L      + V   V  VPDE+ GE +V
Sbjct: 1030 DEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLV 1087

Length = 1146

>gnl|CDD|235865 PRK06814, PRK06814, acylglycerophosphoethanolamine acyltransferase; Provisional

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 50/170 (29%), Positives = 74/170 (43%), Gaps = 25/170 (14%)

Query: 43   SSPVIALTAGAPCSPTLFNKI----RDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYN 98
            ++PVIA       +  + NK     R   GI++ +  V    G  +  G  G +  RG N
Sbjct: 944  TAPVIA------LNTPMHNKAGTVGRLLPGIEYRLEPV---PG--IDEG--GRLFVRGPN 990

Query: 99   VMLGYYGEENK-ILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIE- 154
            VMLGY   EN  +LE   D W+ +GD   + E G+  + GR K      GE I    +E 
Sbjct: 991  VMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGFITIKGRAKRFAKIAGEMISLAAVEE 1050

Query: 155  YVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
               +  PD + A V  +PD R GE ++    L   +  T+     + K  
Sbjct: 1051 LAAELWPDALHAAVS-IPDARKGERIIL---LTTASDATRAAFLAHAKAA 1096

Length = 1140

>gnl|CDD|180374 PRK06060, PRK06060, acyl-CoA synthetase; Validated

 Score = 49.6 bits (118), Expect = 3e-07
 Identities = 42/184 (22%), Positives = 73/184 (39%), Gaps = 24/184 (13%)

Query: 12  TVLYGTPTMYVDLISSIQPLT-----------EEM-PNIAEELSS-----PVIALTAGAP 54
           +VLYG P  +  +I S  P +           E +   +AE L       P++       
Sbjct: 238 SVLYGVPNFFARVIDSCSPDSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTE 297

Query: 55  CSPTLFNKIRDTFGIKHL-------IVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEE 107
              T  +   D + +  L        ++VV   G     G+ G++  RG  +  GY+   
Sbjct: 298 VGQTFVSNRVDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRP 357

Query: 108 NKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQ 167
           +  + N+ W  + D   +  +G+     R  D  + GG N+ P+E+E ++     V EA 
Sbjct: 358 DSPVANEGWLDTRDRVCIDSDGWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAA 417

Query: 168 VYGV 171
           V  V
Sbjct: 418 VVAV 421

Length = 705

>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 39/122 (31%), Positives = 62/122 (50%), Gaps = 9/122 (7%)

Query: 90  GEVCYRGYNVMLGYYGEENK---ILENDEWFPSGDFFILHENGYGQVVGRIKDII-IRGG 145
           GE+C RG  +  GYY +E +   +++ D W  +GD  +    G  +++ R K+I  +  G
Sbjct: 459 GEICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQG 518

Query: 146 ENIIPKEIEYVLQTHPDVVEAQVYGVP-DERLGEVVVANIE-LKPGAS---LTQDDIKTY 200
           E I P++IE V      V +  VYG   +  L  VVV + E LK  A+   +  +D+K  
Sbjct: 519 EYIAPEKIENVYAKCKFVAQCFVYGDSLNSSLVAVVVVDPEVLKAWAASEGIKYEDLKQL 578

Query: 201 CK 202
           C 
Sbjct: 579 CN 580

Length = 651

>gnl|CDD|213303 cd05937, FATP_chFAT1_like, Uncharacterized subfamily of bifunctional fatty acid transporter/very-long-chain acyl-CoA synthetase in fungi

 Score = 49.0 bits (117), Expect = 5e-07
 Identities = 42/140 (30%), Positives = 59/140 (42%), Gaps = 22/140 (15%)

Query: 78  DKKGNIV--PMGMCGEVCYR--GYNVML--GYYGEEN----KILEN-----DEWFPSGDF 122
            K G  V  P+G  GE+  R    N  L  GY   E+    K+L +     D W+ +GD 
Sbjct: 286 PKTGFCVRAPVGEPGEMLGRVRFKNRELFQGYLKNEDATESKLLRDVFRKGDIWYRTGDL 345

Query: 123 FILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVP----DERLGE 178
                +G    + R+ D      EN+   E+  VL   P V EA VYGV     D R G 
Sbjct: 346 LRQDADGRWYFLDRLGDTFRWKSENVSTGEVADVLGAIPSVAEANVYGVKVPGYDGRAG- 404

Query: 179 VVVANIELKPGASLTQDDIK 198
              A I L+  +++  +  K
Sbjct: 405 --CAAITLEESSAVETEFTK 422

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Members of this family are fungal FATPs, including FAT1 from Cochliobolus heterostrophus. Length = 468

>gnl|CDD|181109 PRK07769, PRK07769, long-chain-fatty-acid--CoA ligase; Validated

 Score = 48.6 bits (116), Expect = 8e-07
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 28/125 (22%)

Query: 84  VPMGMCGEVCYRGYNVMLGYYGEE--------NKIL------------ENDEWFPSGDFF 123
           +P G  GE+   G N+  GY+G+         N +             ++  W  +GD+ 
Sbjct: 413 LPDGQIGEIWLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYG 472

Query: 124 ILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT-----HPDVVEAQVYGVPDERLGE 178
           +   +G   + GR+KD++I  G N  P+++EY  Q          V A  + VP  +L +
Sbjct: 473 VYF-DGELYITGRVKDLVIIDGRNHYPQDLEYTAQEATKALRTGYVAA--FSVPANQLPQ 529

Query: 179 VVVAN 183
           VV  +
Sbjct: 530 VVFDD 534

Length = 631

>gnl|CDD|235624 PRK05850, PRK05850, acyl-CoA synthetase; Validated

 Score = 48.0 bits (115), Expect = 9e-07
 Identities = 43/133 (32%), Positives = 60/133 (45%), Gaps = 22/133 (16%)

Query: 73  IVKVVDKKGNI-VPMGMCGEVCYRGYNVMLGYYGEEN--------KILENDE------WF 117
            V++VD    I  P G  GE+   G NV  GY+ +           +++         W 
Sbjct: 380 TVRIVDPDTCIECPAGTVGEIWVHGDNVAAGYWQKPEETERTFGATLVDPSPGTPEGPWL 439

Query: 118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQ--THPDVVEAQVYGVPDER 175
            +GD   + E G   +VGRIKD++I  G N  P +IE  +Q  T   V       VPD+ 
Sbjct: 440 RTGDLGFISE-GELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGGRVA---AISVPDDG 495

Query: 176 LGEVVVANIELKP 188
             E +VA IELK 
Sbjct: 496 -TEKLVAIIELKK 507

Length = 578

>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase

 Score = 47.9 bits (114), Expect = 1e-06
 Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 5/91 (5%)

Query: 85  PMGM--CGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDI 140
           P+G    GE+C RG  +  GYY       E   D WF +GD   +  NG  +++ R K++
Sbjct: 459 PLGEPPRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNL 518

Query: 141 I-IRGGENIIPKEIEYVLQTHPDVVEAQVYG 170
           I +  GE +  + +E V   +P V +  VYG
Sbjct: 519 IKLSQGEYVALEYLENVYGQNPIVEDIWVYG 549

Length = 660

>gnl|CDD|213323 cd12115, A_NRPS_Sfm_like, The adenylation domain of nonribosomal peptide synthetases (NRPS), including Saframycin A gene cluster from Streptomyces lavendulae

 Score = 46.1 bits (110), Expect = 4e-06
 Identities = 42/145 (28%), Positives = 62/145 (42%), Gaps = 17/145 (11%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG-----EENKILENDEWFPS------GDF 122
             V+D     VP+G+ GE+   G  V  GY G      E  +       P       GD 
Sbjct: 279 AYVLDAHLQPVPVGVPGELYIGGAGVARGYLGRPELTAERFLPNPFAGSPGERLYRTGD- 337

Query: 123 FILHENGYGQVV--GRIKD-IIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEV 179
            ++     GQ+   GRI D + +RG   I   EIE  L++ P V EA V  + D      
Sbjct: 338 -LVRRRADGQLEYLGRIDDQVKVRG-FRIELGEIEAALRSIPGVAEAVVVAIGDAAGDRQ 395

Query: 180 VVANIELKPGASLTQDDIKTYCKGK 204
           +VA I   PGA++  +D++     +
Sbjct: 396 LVAYIVADPGAAIDIEDLRARLATR 420

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides in bacteria and fungi via a template-directed, nucleic acid independent nonribosomal mechanism. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. This family includes the saframycin A gene cluster from Streptomyces lavendulae which implicates the NRPS system for assembling the unusual tetrapeptidyl skeleton in an iterative manner. It also includes saframycin Mx1 produced by Myxococcus xanthus NRPS. Length = 449

>gnl|CDD|215353 PLN02654, PLN02654, acetate-CoA ligase

 Score = 45.7 bits (108), Expect = 6e-06
 Identities = 38/137 (27%), Positives = 62/137 (45%), Gaps = 12/137 (8%)

Query: 67  FGIKHLIVKVVDKKGNIVPMGMCGEVCYRGY--NVMLGYYGEENKILENDEWFP------ 118
           FG++ +IV   D+KG  +     G +C +          YG+  +  E   + P      
Sbjct: 461 FGVQPVIV---DEKGKEIEGECSGYLCVKKSWPGAFRTLYGDHER-YETTYFKPFAGYYF 516

Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
           SGD     ++GY  + GR+ D+I   G  I   E+E  L +HP   EA V G+  E  G+
Sbjct: 517 SGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQ 576

Query: 179 VVVANIELKPGASLTQD 195
            + A + L  G   +++
Sbjct: 577 GIYAFVTLVEGVPYSEE 593

Length = 666

>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 8/91 (8%)

Query: 90  GEVCYRGYNVMLGYYGEENKILEN---DE----WFPSGDFFILHENGYGQVVGRIKDII- 141
           GE+   G +V LGY+  + K  E    DE    WF +GD    H +G  +++ R KDI+ 
Sbjct: 503 GEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVK 562

Query: 142 IRGGENIIPKEIEYVLQTHPDVVEAQVYGVP 172
           ++ GE +   ++E  L   P V    V+  P
Sbjct: 563 LQHGEYVSLGKVEAALSVSPYVDNIMVHADP 593

Length = 696

>gnl|CDD|236231 PRK08308, PRK08308, acyl-CoA synthetase; Validated

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 27/77 (35%), Positives = 36/77 (46%)

Query: 106 EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVE 165
           EE  +   D+   + D     E G    +GR+ D+I   G N+ P E+E V+   P V E
Sbjct: 282 EEIVVKMGDKEIFTKDLGYKSERGTLHFMGRMDDVINVSGLNVYPIEVEDVMLRLPGVQE 341

Query: 166 AQVYGVPDERLGEVVVA 182
           A VY   D   GE V A
Sbjct: 342 AVVYRGKDPVAGERVKA 358

Length = 414

>gnl|CDD|213278 cd05910, FACL_like_1, Uncharacterized subfamily of fatty acid CoA ligase (FACL)

 Score = 44.7 bits (106), Expect = 1e-05
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 7/113 (6%)

Query: 83  IVPMGMCGEVCYRGYNVMLGYYG-----EENKILENDE-WFPSGDFFILHENGYGQVVGR 136
            +P G  GE+   G +V   YY      +  KI + +  W   GD     + G     GR
Sbjct: 292 ELPPGEVGEIIVSGPHVTREYYNRPEATKLAKISDGNRIWHRMGDLGYFDDQGRLWFCGR 351

Query: 137 IKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
               +   G  +    +E V   HP V  + + GV  +   +  V  +E  P 
Sbjct: 352 KAHRVETAGGTLFTVPVEQVFNRHPGVRRSALVGV-GKPGTQAPVLVVEPMPP 403

Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 455

>gnl|CDD|178452 PLN02861, PLN02861, long-chain-fatty-acid-CoA ligase

 Score = 43.7 bits (103), Expect = 3e-05
 Identities = 35/120 (29%), Positives = 54/120 (45%), Gaps = 7/120 (5%)

Query: 90  GEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDII-IRGGE 146
           GE+C RG  +  GY+  ++   E   D WF +GD      NG  +++ R K+I  +  GE
Sbjct: 466 GEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGE 525

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDER-LGEVVVAN---IELKPGASLTQDDIKTYCK 202
            +  + +E      P +    VYG   E  L  VVV +   +E     +    D K+ CK
Sbjct: 526 YVAVENLENTYSRCPLIASIWVYGNSFESFLVAVVVPDRQALEDWAANNNKTGDFKSLCK 585

Length = 660

>gnl|CDD|233550 TIGR01733, AA-adenyl-dom, amino acid adenylation domain

 Score = 43.0 bits (102), Expect = 4e-05
 Identities = 48/216 (22%), Positives = 72/216 (33%), Gaps = 61/216 (28%)

Query: 3   SRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNK 62
           +  I +   TVL  TP++          L   +P     L+S  + +  G   +P L ++
Sbjct: 205 AALIAEHPVTVLNLTPSLL-------ALLAAALP---PALASLRLVILGGEALTPALVDR 254

Query: 63  IRDTFGIKHLI--------------------------------------VKVVDKKGNIV 84
            R       LI                                      + V+D     V
Sbjct: 255 WRARGPGARLINLYGPTETTVWSTATLVDPDDAPRESPVPIGRPLANTRLYVLDDDLRPV 314

Query: 85  PMGMCGEVCYRGYNVMLGYYGEE----NKILENDEWFP-------SGDFFILHENGYGQV 133
           P+G+ GE+   G  V  GY         + + +            +GD      +G  + 
Sbjct: 315 PVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGDGARLYRTGDLVRYLPDGNLEF 374

Query: 134 VGRIKDII-IRGGENIIPKEIEYVLQTHPDVVEAQV 168
           +GRI D + IR G  I   EIE  L  HP V EA V
Sbjct: 375 LGRIDDQVKIR-GYRIELGEIEAALLRHPGVREAVV 409

This model represents a domain responsible for the specific recognition of amino acids and activation as adenylyl amino acids. The reaction catalyzed is aa + ATP -> aa-AMP + PPi. These domains are usually found as components of multi-domain non-ribosomal peptide synthetases and are usually called "A-domains" in that context (for a review, see ). A-domains are almost invariably followed by "T-domains" (thiolation domains, pfam00550) to which the amino acid adenylate is transferred as a thiol-ester to a bound pantetheine cofactor with the release of AMP (these are also called peptide carrier proteins, or PCPs. When the A-domain does not represent the first module (corresponding to the first amino acid in the product molecule) it is usually preceded by a "C-domain" (condensation domain, pfam00668) which catalyzes the ligation of two amino acid thiol-esters from neighboring modules. This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group. Length = 409

>gnl|CDD|171527 PRK12476, PRK12476, putative fatty-acid--CoA ligase; Provisional

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 39/142 (27%), Positives = 59/142 (41%), Gaps = 26/142 (18%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG--EENKIL-------------------E 112
           V V    G  +P G  GE+   G N+  GY+G  EE +                     +
Sbjct: 414 VIVDPDTGAELPDGEVGEIWLHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAAD 473

Query: 113 NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIE-YVLQTHPDVVEAQV--Y 169
           +  W  +GD  + + +G   + GRI D+I+  G N  P++IE  V +  P V    V  +
Sbjct: 474 DGTWLRTGDLGV-YLDGELYITGRIADLIVIDGRNHYPQDIEATVAEASPMVRRGYVTAF 532

Query: 170 GVPDERLGEVVVANIELKPGAS 191
            VP E    +V+   E   G S
Sbjct: 533 TVPAEDNERLVIV-AERAAGTS 553

Length = 612

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 42.6 bits (100), Expect = 7e-05
 Identities = 34/123 (27%), Positives = 52/123 (42%), Gaps = 9/123 (7%)

Query: 69  IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGE---------ENKILENDEWFPS 119
           I +L   ++D     VP+G+ GE+   G  +  GY+G           +  +  +  + +
Sbjct: 831 IANLACYILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMYRT 890

Query: 120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEV 179
           GD      +G  +  GRI   +   G  I   EIE  L  HP V EA V  V  ++L   
Sbjct: 891 GDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVDGKQLVGY 950

Query: 180 VVA 182
           VV 
Sbjct: 951 VVL 953

Length = 5163

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 8/98 (8%)

Query: 74  VKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYY----GEENKILEND--EWFPSGDFFILH 126
           V +VD +   ++     GE+   G ++  GY+          +E+D   W  +GD   L 
Sbjct: 381 VLIVDPQSLEVLGDNRVGEIWASGPSIAHGYWRNPEASAKTFVEHDGRTWLRTGDLGFLR 440

Query: 127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVV 164
           + G   V GR+KD++I  G N+ P++IE  ++   +VV
Sbjct: 441 D-GELFVTGRLKDMLIVRGHNLYPQDIEKTVEREVEVV 477

Length = 4334

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 36/139 (25%), Positives = 56/139 (40%), Gaps = 13/139 (9%)

Query: 76   VVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE----------NDEWFPSGDFFIL 125
            ++D   N++  GM GE+   G  +  GY        E           +  + +GD    
Sbjct: 2332 ILDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASGERLYRTGDLARY 2391

Query: 126  HENGYGQVVGRI-KDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANI 184
              +G  + +GRI   + IRG   I   EIE  LQ HP V EA V    D   G+ +VA +
Sbjct: 2392 RADGVVEYLGRIDHQVKIRGFR-IELGEIEARLQAHPAVREAVVVAQ-DGASGKQLVAYV 2449

Query: 185  ELKPGASLTQDDIKTYCKG 203
                 A     +++ +   
Sbjct: 2450 VPDDAAEDLLAELRAWLAA 2468

Length = 5163

>gnl|CDD|213285 cd05918, A_NRPS_SidN3_like, The adenylation (A) domain of siderophore-synthesizing nonribosomal peptide synthetases (NRPS)

 Score = 39.9 bits (94), Expect = 5e-04
 Identities = 39/126 (30%), Positives = 55/126 (43%), Gaps = 25/126 (19%)

Query: 76  VVDKKG-NIVPMGMCGEVCYRGYNVMLGYYGE----ENKILENDEWFP--------SGDF 122
           V+D     +VP+G  GE+C  G  V  GY         K + +  W          +GD 
Sbjct: 271 VLDPDLEPLVPIGAVGELCIGGPGVARGYLNRPELTAEKFIPDPFWLNNPGGRIYRTGDL 330

Query: 123 FILHENGYGQVVGRIKDII-IRG-----GENIIPKEIEYVLQTHPDVVEAQVYGVPDERL 176
               E+G  + +GR  D + IRG     GE      IE VL+  P VV A V  + D+  
Sbjct: 331 VRYLEDGSLEFLGRKDDQVKIRGQRIELGE------IEAVLRALPGVVVAAVVLLLDDPG 384

Query: 177 GEVVVA 182
           G+ +VA
Sbjct: 385 GKQLVA 390

The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino) acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family of siderophore-synthesizing NRPS includes the third adenylation domain of SidN from the endophytic fungus Neotyphodium lolii, ferrichrome siderophore synthetase, HC-toxin synthetase, and enniatin synthase. NRPSs are large multifunctional enzymes which synthesize many therapeutically useful peptides. These natural products include antibiotics, immunosuppressants, plant and animal toxins, and enzyme inhibitors. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 447

>gnl|CDD|240316 PTZ00216, PTZ00216, acyl-CoA synthetase; Provisional

 Score = 39.6 bits (93), Expect = 6e-04
 Identities = 19/52 (36%), Positives = 31/52 (59%), Gaps = 3/52 (5%)

Query: 90  GEVCYRGYNVMLGYYGEE---NKILENDEWFPSGDFFILHENGYGQVVGRIK 138
           GE+  RG  +  GYY +E    ++L+ D WF +GD   +  NG  +++GR+K
Sbjct: 508 GEILLRGPFLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVK 559

Length = 700

>gnl|CDD|240325 PTZ00237, PTZ00237, acetyl-CoA synthetase; Provisional

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 25/82 (30%), Positives = 35/82 (42%)

Query: 116 WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDER 175
           ++ SGD     ENGY  +V R  D I   G  +    IE  +  HP V+E    G+ D  
Sbjct: 493 YYNSGDLGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPD 552

Query: 176 LGEVVVANIELKPGASLTQDDI 197
              V +  + LK   S    D+
Sbjct: 553 CYNVPIGLLVLKQDQSNQSIDL 574

Length = 647

>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

 Score = 39.3 bits (92), Expect = 8e-04
 Identities = 29/100 (29%), Positives = 41/100 (41%), Gaps = 14/100 (14%)

Query: 95  RGYNVMLGYYGEENK-ILE-----NDE------WFPSGDFFILHENGYGQVVGRIKDIII 142
           +G N+M GY   E   +LE     N        W+ +GD     E G+ Q+ GR K    
Sbjct: 559 KGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWYDTGDIVRFDEQGFVQIQGRAKRFAK 618

Query: 143 RGGENIIPKEIEYV-LQTHPDVVEAQVYGVPDERLGEVVV 181
             GE +  + +E + L   PD   A      D   GE +V
Sbjct: 619 IAGEMVSLEMVEQLALGVSPDKQHATA-IKSDASKGEALV 657

Length = 718

>gnl|CDD|237054 PRK12316, PRK12316, peptide synthase; Provisional

 Score = 39.2 bits (91), Expect = 0.001
 Identities = 30/115 (26%), Positives = 47/115 (40%), Gaps = 9/115 (7%)

Query: 76   VVDKKGNIVPMGMCGEVCYRGYNVMLGYYGE---------ENKILENDEWFPSGDFFILH 126
            ++D     VP+G  GE+   G  +  GY+            +  +  +  + +GD     
Sbjct: 3376 ILDGSLEPVPVGALGELYLGGEGLARGYHNRPGLTAERFVPDPFVPGERLYRTGDLARYR 3435

Query: 127  ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVV 181
             +G  + +GR+   +   G  I   EIE  L  HP V EA V  V   +L   VV
Sbjct: 3436 ADGVIEYIGRVDHQVKIRGFRIELGEIEARLLEHPWVREAVVLAVDGRQLVAYVV 3490

Length = 5163

>gnl|CDD|235564 PRK05691, PRK05691, peptide synthase; Validated

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 13/118 (11%)

Query: 76   VVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE----------NDEWFPSGDFFIL 125
            ++D+   +VP+G  GE+C  G  V  GY G+  +              +  + +GD    
Sbjct: 4053 LLDEALELVPLGAVGELCVAGTGVGRGYVGDPLRTALAFVPHPFGAPGERLYRTGDLARR 4112

Query: 126  HENGYGQVVGRIK-DIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVA 182
              +G  + VGRI   + IR G  I   EIE  L    +V EA V  V +   G+ +V 
Sbjct: 4113 RSDGVLEYVGRIDHQVKIR-GYRIELGEIEARLHEQAEVREAAV-AVQEGVNGKHLVG 4168

Length = 4334

>gnl|CDD|236668 PRK10252, entF, enterobactin synthase subunit F; Provisional

 Score = 38.1 bits (89), Expect = 0.003
 Identities = 31/141 (21%), Positives = 56/141 (39%), Gaps = 17/141 (12%)

Query: 76  VVDKKGNIVPMGMCGEVCYRGYNVMLGYYGE---------ENKILENDEWFPSGDFFILH 126
           ++D +   VP G+ G++   G  +  GY G           +     +  + +GD     
Sbjct: 789 ILDARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPGERMYRTGDVARWL 848

Query: 127 ENGYGQVVGRIKDII-IRGGENIIPKEIEYVLQTHPDV----VEAQVYGVPDERLGEV-- 179
           ++G  + +GR  D + IRG + I   EI+  +Q  PDV      A V        G+   
Sbjct: 849 DDGAVEYLGRSDDQLKIRG-QRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQ 907

Query: 180 VVANIELKPGASLTQDDIKTY 200
           +V  +  + G  L    ++  
Sbjct: 908 LVGYLVSQSGLPLDTSALQAQ 928

Length = 1296

>gnl|CDD|224458 COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism]

 Score = 37.7 bits (88), Expect = 0.003
 Identities = 52/231 (22%), Positives = 83/231 (35%), Gaps = 56/231 (24%)

Query: 10  KCTVLYGTPTMYVDLISSIQPLTEEMPN--IAEELSSPVIALTAGAPCSPTLFNKIRDTF 67
           K TV+  TP       S +  L EE     I  +  S    +    P S  +   I + F
Sbjct: 182 KPTVIAATP-------SYLLYLAEEAEEEGIDPDKLSLKKGIFGAEPWSEEMRKVIENRF 234

Query: 68  GIK-----------------------------HLIVKVVDKK-GNIVPMGMCGEVCY--- 94
           G K                             H I ++VD + G  +P G  GE+     
Sbjct: 235 GCKAFDIYGLTEGFGPGAGECTERNGLHIWEDHFIFEIVDPETGEQLPDGERGELVITTL 294

Query: 95  -RGYNVMLGYY-GEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKE 152
            +    ++ Y  G+   IL +      G      E     + GR  D++I  G N+ P +
Sbjct: 295 TKEGMPLIRYRTGDITVILSDPC--GCGRTHRRIER----IEGRSDDMLIVRGVNVFPSQ 348

Query: 153 IEYVLQTHPDV---VEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTY 200
           IE VL   P+V    +  +    +  L E+ V  +EL+  A   +D+ +  
Sbjct: 349 IERVLLQIPEVTPHYQIILTR--NGGLDELTVR-VELENEAEELEDERRLA 396

Length = 438

>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase

 Score = 37.3 bits (86), Expect = 0.004
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 3/84 (3%)

Query: 90  GEVCYRGYNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDII-IRGGE 146
           GE+C RG  +  GYY  E+   E   D W  +GD      NG  +++ R K+I  +  GE
Sbjct: 469 GEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGE 528

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYG 170
            +  + IE +      V    VYG
Sbjct: 529 YVAVENIENIYGEVQAVDSVWVYG 552

Length = 666

>gnl|CDD|213305 cd05939, hsFATP4_like, Fatty acid transport proteins (FATP), including FATP4 and FATP1, and similar proteins

 Score = 37.0 bits (86), Expect = 0.004
 Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 8/79 (10%)

Query: 101 LGYYGE---ENKILEN-----DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKE 152
            GY  E     KI  +     D  F SGD  ++ E GY     R  D     GEN+   E
Sbjct: 327 DGYVNEGATNKKIARDVFKKGDSAFLSGDVLVMDELGYLYFKDRTGDTFRWKGENVSTTE 386

Query: 153 IEYVLQTHPDVVEAQVYGV 171
           +E +L     + +  VYGV
Sbjct: 387 VEGILSNVLGLEDVVVYGV 405

Fatty acid transport protein (FATP) transports long-chain or very-long-chain fatty acids across the plasma membrane. At least five copies of FATPs are identified in mammalian cells. This family includes FATP4, FATP1, and homologous proteins. Each FATP has unique patterns of tissue distribution. FATP4 is mainly expressed in the brain, testis, colon and kidney. FATPs also have fatty acid CoA synthetase activity, thus playing dual roles as fatty acid transporters and its activation enzymes. FATPs are the key players in the trafficking of exogenous fatty acids into the cell and in intracellular fatty acid homeostasis. Length = 474

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	204
KOG1176|consensus	537		100.0
COG0365	528	Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l	100.0
KOG1177|consensus	596		100.0
COG1021	542	EntE Peptide arylation enzymes [Secondary metaboli	100.0
PLN02654	666	acetate-CoA ligase	100.0
PTZ00237	647	acetyl-CoA synthetase; Provisional	100.0
PRK07788	549	acyl-CoA synthetase; Validated	100.0
COG0318	534	CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l	100.0
TIGR02188	625	Ac_CoA_lig_AcsA acetate--CoA ligase. This model de	100.0
KOG1175|consensus	626		100.0
PRK07529	632	AMP-binding domain protein; Validated	100.0
PRK00174	637	acetyl-CoA synthetase; Provisional	100.0
PLN03051	499	acyl-activating enzyme; Provisional	100.0
TIGR02316	628	propion_prpE propionate--CoA ligase. This family c	100.0
PLN02574	560	4-coumarate--CoA ligase-like	100.0
TIGR01217	652	ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym	100.0
PRK03584	655	acetoacetyl-CoA synthetase; Provisional	100.0
PRK05677	562	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13295	547	cyclohexanecarboxylate-CoA ligase; Reviewed	100.0
PRK09274	552	peptide synthase; Provisional	100.0
PRK06839	496	acyl-CoA synthetase; Validated	100.0
PRK05852	534	acyl-CoA synthetase; Validated	100.0
PRK10524	629	prpE propionyl-CoA synthetase; Provisional	100.0
PRK06060	705	acyl-CoA synthetase; Validated	100.0
TIGR02275	527	DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot	100.0
PRK13382	537	acyl-CoA synthetase; Provisional	100.0
PRK04319	570	acetyl-CoA synthetase; Provisional	100.0
PRK07470	528	acyl-CoA synthetase; Validated	100.0
PRK06334	539	long chain fatty acid--[acyl-carrier-protein] liga	100.0
PRK06145	497	acyl-CoA synthetase; Validated	100.0
TIGR03208	538	cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.	100.0
PLN02246	537	4-coumarate--CoA ligase	100.0
PRK12492	562	long-chain-fatty-acid--CoA ligase; Provisional	100.0
PRK07656	513	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK12583	558	acyl-CoA synthetase; Provisional	100.0
PRK08315	559	AMP-binding domain protein; Validated	100.0
PLN02330	546	4-coumarate--CoA ligase-like 1	100.0
PRK08314	546	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK06188	524	acyl-CoA synthetase; Validated	100.0
PLN02860	563	o-succinylbenzoate-CoA ligase	100.0
PRK05605	573	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK10946	536	entE enterobactin synthase subunit E; Provisional	100.0
PRK06710	563	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK07008	539	long-chain-fatty-acid--CoA ligase; Validated	100.0
PRK13390	501	acyl-CoA synthetase; Provisional	100.0
PRK08316	523	acyl-CoA synthetase; Validated	100.0
PLN03052	728	acetate--CoA ligase; Provisional	100.0
PRK08751	560	putative long-chain fatty acyl CoA ligase; Provisi	99.98
PRK09088	488	acyl-CoA synthetase; Validated	99.98
PRK06155	542	crotonobetaine/carnitine-CoA ligase; Provisional	99.98
PRK08276	502	long-chain-fatty-acid--CoA ligase; Validated	99.98
PRK13383	516	acyl-CoA synthetase; Provisional	99.98
PRK12406	509	long-chain-fatty-acid--CoA ligase; Provisional	99.98
PRK07514	504	malonyl-CoA synthase; Validated	99.98
PRK07787	471	acyl-CoA synthetase; Validated	99.98
PRK07059	557	Long-chain-fatty-acid--CoA ligase; Validated	99.98
PRK07638	487	acyl-CoA synthetase; Validated	99.98
PLN02614	666	long-chain acyl-CoA synthetase	99.97
PRK06187	521	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK08008	517	caiC putative crotonobetaine/carnitine-CoA ligase;	99.97
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	99.97
TIGR03205	541	pimA dicarboxylate--CoA ligase PimA. PimA, a membe	99.97
PLN02736	651	long-chain acyl-CoA synthetase	99.97
PLN02861	660	long-chain-fatty-acid-CoA ligase	99.97
PRK06018	542	putative acyl-CoA synthetase; Provisional	99.97
TIGR02262	508	benz_CoA_lig benzoate-CoA ligase family. Character	99.97
PLN03102	579	acyl-activating enzyme; Provisional	99.97
PRK07786	542	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK07769	631	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK05857	540	acyl-CoA synthetase; Validated	99.97
TIGR03098	515	ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor	99.97
PRK10252	1296	entF enterobactin synthase subunit F; Provisional	99.97
PRK08974	560	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK12467	3956	peptide synthase; Provisional	99.97
PRK06087	547	short chain acyl-CoA synthetase; Reviewed	99.97
PTZ00342	746	acyl-CoA synthetase; Provisional	99.97
TIGR01734	502	D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig	99.97
PRK12316	5163	peptide synthase; Provisional	99.97
PRK13391	511	acyl-CoA synthetase; Provisional	99.97
PRK07867	529	acyl-CoA synthetase; Validated	99.97
PRK12316	5163	peptide synthase; Provisional	99.97
PRK06178	567	acyl-CoA synthetase; Validated	99.97
PRK06164	540	acyl-CoA synthetase; Validated	99.97
PRK03640	483	O-succinylbenzoic acid--CoA ligase; Provisional	99.97
TIGR03443	1389	alpha_am_amid L-aminoadipate-semialdehyde dehydrog	99.97
PRK12476	612	putative fatty-acid--CoA ligase; Provisional	99.97
PRK05851	525	long-chain-fatty-acid--[acyl-carrier-protein] liga	99.97
PRK05620	576	long-chain-fatty-acid--CoA ligase; Validated	99.97
PRK04813	503	D-alanine--poly(phosphoribitol) ligase subunit 1;	99.97
PLN02479	567	acetate-CoA ligase	99.97
PRK12467	3956	peptide synthase; Provisional	99.97
PRK13388	540	acyl-CoA synthetase; Provisional	99.97
PLN02387	696	long-chain-fatty-acid-CoA ligase family protein	99.96
PRK05691	4334	peptide synthase; Validated	99.96
PRK08162	545	acyl-CoA synthetase; Validated	99.96
PRK08043	718	bifunctional acyl-[acyl carrier protein] synthetas	99.96
PRK07445	452	O-succinylbenzoic acid--CoA ligase; Reviewed	99.96
PRK07868	994	acyl-CoA synthetase; Validated	99.96
PRK09192	579	acyl-CoA synthetase; Validated	99.96
PRK05691	4334	peptide synthase; Validated	99.96
PRK07824	358	O-succinylbenzoic acid--CoA ligase; Provisional	99.96
PLN02430	660	long-chain-fatty-acid-CoA ligase	99.96
PTZ00216	700	acyl-CoA synthetase; Provisional	99.96
PRK07798	533	acyl-CoA synthetase; Validated	99.96
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	99.96
PRK08180	614	feruloyl-CoA synthase; Reviewed	99.95
TIGR01923	436	menE O-succinylbenzoate-CoA ligase. This model rep	99.95
PRK08279	600	long-chain-acyl-CoA synthetase; Validated	99.95
PRK05850	578	acyl-CoA synthetase; Validated	99.95
PRK09029	458	O-succinylbenzoic acid--CoA ligase; Provisional	99.95
COG1022	613	FAA1 Long-chain acyl-CoA synthetases (AMP-forming)	99.95
TIGR01733	408	AA-adenyl-dom amino acid adenylation domain. This	99.95
PRK07768	545	long-chain-fatty-acid--CoA ligase; Validated	99.94
PRK12582	624	acyl-CoA synthetase; Provisional	99.94
PF00501	417	AMP-binding: AMP-binding enzyme; InterPro: IPR0008	99.93
KOG1256|consensus	691		99.93
PRK08308	414	acyl-CoA synthetase; Validated	99.92
TIGR02155	422	PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet	99.92
KOG1180|consensus	678		99.92
KOG1179|consensus	649		99.85
TIGR02372	386	4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv	99.81
COG1541	438	PaaK Coenzyme F390 synthetase [Coenzyme metabolism	99.81
TIGR03335	445	F390_ftsA coenzyme F390 synthetase. This enzyme, c	99.81
PRK09188	365	serine/threonine protein kinase; Provisional	99.72
COG1020	642	EntF Non-ribosomal peptide synthetase modules and	99.7
KOG1178|consensus	1032		99.51
PTZ00297	1452	pantothenate kinase; Provisional	99.43
TIGR02304	430	aden_form_hyp probable adenylate-forming enzyme. M	99.38
KOG3628|consensus	1363		99.03
PF13193	73	AMP-binding_C: AMP-binding enzyme C-terminal domai	98.45
KOG3628|consensus	1363		97.67
PF03321	528	GH3: GH3 auxin-responsive promoter; InterPro: IPR0	97.54
PF04443	365	LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR	97.28
PF14535	96	AMP-binding_C_2: AMP-binding enzyme C-terminal dom	96.85
PLN02249	597	indole-3-acetic acid-amido synthetase	95.44
PLN02620	612	indole-3-acetic acid-amido synthetase	91.17
PLN02247	606	indole-3-acetic acid-amido synthetase	83.11

>KOG1176|consensus

Probab=100.00  E-value=1.7e-42  Score=288.90  Aligned_cols=196  Identities=40%  Similarity=0.583  Sum_probs=184.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.+++|++|++.++|+++..|++.+....       +++++++.+.+||+++++++.+++.+.++..           
T Consensus       265 ~~~~i~kykvt~~~~vP~~~~~l~~~p~~~~-------~~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~  337 (537)
T KOG1176|consen  265 FLDLIEKYKVTHLFLVPPVLNMLAKSPIVKK-------YDLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEA  337 (537)
T ss_pred             HHHHHHHhCEEEEEcChHHHHHHhcCCccCc-------ccCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccc
Confidence            6889999999999999999999999886666       7999999999999999999999999998832           


Q ss_pred             -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEE
Q psy13807         71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFI  124 (204)
Q Consensus        71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~  124 (204)
                                             ++...+.++.|..+++++.||||++|++++.||++||+.+..   ++|||+|||+|+
T Consensus       338 ~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~e~g~~l~~~~~GEI~vrg~~imkGY~~NpeaT~~~~~~~GW~~TGDiGy  417 (537)
T KOG1176|consen  338 GGLITSNDWGPERKPGSVGRLLPGVRVKVLDETGVSLGPNQTGEICVRGPQVMKGYLKNPEATKEAFDDDGWFHTGDLGY  417 (537)
T ss_pred             cCceeecCCCccCcccccCccccceEEEeeCCCCCCCCCCCceEEEEECcccchhhcCChHHHHhhcccCCccccCceEE
Confidence                                   566777888899999999999999999999999999999886   449999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK  204 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  204 (204)
                      +|+||+++|.+|++|+||.+|.+|+|.|||++|.+||.|.||+|++.+++..|+.++|+|+.+++...+++++.+++++|
T Consensus       418 ~D~DG~l~IvdR~KdlIk~~G~qv~P~EiE~vL~~hP~V~eaaVvgipDe~~Ge~p~A~VV~k~g~~lte~di~~~v~k~  497 (537)
T KOG1176|consen  418 FDEDGYLYIVDRSKDLIKYGGEQVSPAEIEAVLLTHPDVLEAAVVGIPDEVWGETPAAFVVLKKGSTLTEKDIIEYVRKK  497 (537)
T ss_pred             EcCCCeEEEecchhhheeeCCEEeCHHHHHHHHHhCCCccEEEEEcccccccCCcceEEEEecCCCcCCHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999875

>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]

Probab=100.00  E-value=1.5e-40  Score=276.14  Aligned_cols=191  Identities=32%  Similarity=0.473  Sum_probs=175.7

Q ss_pred             CHhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc----------
Q psy13807          1 MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------   70 (204)
Q Consensus         1 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------   70 (204)
                      +++++|++|++|.+++.|+.+++|++......       +++++||.+.|.|||+++++++|+.+.+|++          
T Consensus       255 ~~~~~ie~~~vt~~~tsPT~~R~l~~~g~~~~-------~dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEt  327 (528)
T COG0365         255 RLWEALEKYKVTIFGTSPTFLRRLMKLGLGEP-------YDLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTET  327 (528)
T ss_pred             HHHHHHHHhCCceEeeCHHHHHHHHhcCCccc-------ccchhheeeeccCCCCCHHHHHHHHHHhCCCEecccccccc
Confidence            37899999999999999999999999876444       7899999999999999999999999998876          


Q ss_pred             ---------------------ceEEEEECCCCCcCCCCCeeEEEEEeC--cccccccCCcccccC--CCCceeccceEEE
Q psy13807         71 ---------------------HLIVKVVDKKGNIVPMGMCGEVCYRGY--NVMLGYYGEENKILE--NDEWFPSGDFFIL  125 (204)
Q Consensus        71 ---------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~--~~~~~y~~~~~~~~~--~~~~~~TGD~~~~  125 (204)
                                           |+++.++|++|++++.|+ |+|+++.+  +++++||++++.+.+  .+.||.|||.+++
T Consensus       328 g~~~~~~~~~~~~g~~g~p~pG~~~~vvdd~g~~~~~~~-G~Lvi~~~~p~~~~~~w~d~er~~~~y~~~~y~tGD~~~~  406 (528)
T COG0365         328 GMGFIAGRPPVKNGSSGLPLPGYAVRRVDDEGNPVPPGV-GELVVRLPWPGMALTYWNDPERYKEAYFGRWYRTGDWAER  406 (528)
T ss_pred             CccccCCCCCcCCCCCCCCCCCceeEEECCCCCcCCCCc-eEEEEeCCCchhhhhhhCCHHHHHHHHhhceeecCceeEE
Confidence                                 789999999999999999 99999986  899999999988877  3339999999999


Q ss_pred             ecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy13807        126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYC  201 (204)
Q Consensus       126 ~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  201 (204)
                      |+||+|+|+||.||+||++|.|++|.|||++|.+||.|.||+|++.+++..|+.++|||+++++...+  +|++.+
T Consensus       407 DedGy~~i~GR~DDvI~vsG~Rig~~EvE~~l~~hP~VaEaAvVg~pd~~kg~~v~afVvL~~g~~~~--~L~~ei  480 (528)
T COG0365         407 DEDGYFWLHGRSDDVIKVSGKRIGPLEIESVLLAHPAVAEAAVVGVPDPGKGQIVLAFVVLAAGVEPN--ELAEEI  480 (528)
T ss_pred             ccCCCEEEEeeccceEeccCeeccHHHHHHHHHhCcceeeeEEEeccCCCCCcEEEEEEEecCCCChH--HHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999987655  554444

>KOG1177|consensus

Probab=100.00  E-value=5.7e-38  Score=250.21  Aligned_cols=196  Identities=51%  Similarity=0.840  Sum_probs=182.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      .++.|.++++|.++++|+++..|++.+....       .+++++|.++.||+++|+++.+.+.+.....           
T Consensus       316 alqai~~ekcT~l~gtPtM~~Dlln~~~~~~-------~~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEt  388 (596)
T KOG1177|consen  316 ALQAISNEKCTTLYGTPTMFVDLLNIPQKQQ-------VDLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTET  388 (596)
T ss_pred             HHHHHHhhceEEEecChHHHHHHhcchhhcc-------CchhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeecccc
Confidence            5789999999999999999999999888777       8999999999999999999999999853332           


Q ss_pred             -------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccce
Q psy13807         71 -------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDF  122 (204)
Q Consensus        71 -------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~  122 (204)
                                               +.+..++|.+|.++|.|..|+|+++|++.|.+||++++.+.+   .+.||+|||+
T Consensus       389 s~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g~~v~~~~~Gel~iRGY~tMl~Ywg~~~kT~eti~~drW~~TGDi  468 (596)
T KOG1177|consen  389 SPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVDKDGSEVPLGTKGELLIRGYSTMLGYWGEEEKTKETIGNDRWYDTGDI  468 (596)
T ss_pred             CcceeeecCCCCHHHHHhhhhhcccccccccccCCCCccccCCCceEEEEechhheeecCCcccchhhcccccceecCce
Confidence                                     788899999999999999999999999999999998887776   7899999999


Q ss_pred             EEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCC--CCHHHHHHH
Q psy13807        123 FILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS--LTQDDIKTY  200 (204)
Q Consensus       123 ~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~--~~~~~l~~~  200 (204)
                      +.+|++|.+++.||++|+|+.+|++|+|.|||+.|.+||.|.++.|+++++++.|+.++|+|.+..+..  .+.++|+.+
T Consensus       469 ~~m~enG~i~iVGRskdmI~rGGENVyP~ElE~fL~~hp~V~~a~VVGV~D~R~GE~VCA~vRLqe~~e~~~t~E~lKa~  548 (596)
T KOG1177|consen  469 AVMDENGTIEIVGRSKDMIIRGGENVYPTELEDFLNKHPLVKEAHVVGVPDERLGEEVCACVRLQEGAEGKTTAETLKAM  548 (596)
T ss_pred             EEEcCCCcEEEEEcccCeEEeCCcccChHHHHHHHhhCCCeeeEEEEccCCCcccceEEEEEEeeccccccccHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999987755  589999999


Q ss_pred             HhcC
Q psy13807        201 CKGK  204 (204)
Q Consensus       201 l~~~  204 (204)
                      |+.+
T Consensus       549 Ck~k  552 (596)
T KOG1177|consen  549 CKGK  552 (596)
T ss_pred             Hhcc
Confidence            9865

>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=7.1e-37  Score=239.45  Aligned_cols=194  Identities=32%  Similarity=0.444  Sum_probs=182.5

Q ss_pred             hHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc------------
Q psy13807          3 SRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK------------   70 (204)
Q Consensus         3 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~------------   70 (204)
                      +.+|++|++|+..++|.....|++..+...       .+++|||.+-+||+.+++++.+++...+||.            
T Consensus       272 F~lIerh~Vt~tALVPpla~LWlqa~e~~~-------~~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLv  344 (542)
T COG1021         272 FPLIERHGVTVTALVPPLASLWLQAAEWER-------ADLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLV  344 (542)
T ss_pred             HHHHHHhccceEEeccHHHHHHHHhhhccc-------CCchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhh
Confidence            578999999999999999999999887766       8999999999999999999999998888887            


Q ss_pred             ----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEEE
Q psy13807         71 ----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFIL  125 (204)
Q Consensus        71 ----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~~  125 (204)
                                            .-+++|+|.+|+++++|++|+|..+||+.++||++.|+.++.   .+|+|+|||+.++
T Consensus       345 nyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~pGE~G~LltRGPYTirGYyrap~HNa~aF~a~GFYrsGD~V~~  424 (542)
T COG1021         345 NYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAPGEVGELLTRGPYTIRGYYRAPEHNARAFDADGFYRSGDLVRR  424 (542)
T ss_pred             cccccCCchHheeecCCCcCCCcceeEEecCCCCCCCCCCcceeeecCCeeeeeeccCchhhhhccCcCCceecCceeEe
Confidence                                  457899999999999999999999999999999999998887   7999999999999


Q ss_pred             ecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807        126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK  204 (204)
Q Consensus       126 ~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  204 (204)
                      +++|++.+.||.+|+||.+|+||..+|||+.|..||.|.++++++.++...|+..+|||++++ ......+++++|+++
T Consensus       425 ~~dGyl~V~GR~KDQINRgGEKIAAeEvEn~LL~HP~V~~AAlVampDelLGEksCAfiv~~~-~~~~~~qlr~~L~~~  502 (542)
T COG1021         425 DPDGYLVVEGRVKDQINRGGEKIAAEEVENLLLRHPAVHDAALVAMPDELLGEKSCAFIVVKE-PPLRAAQLRRFLRER  502 (542)
T ss_pred             cCCceEEEEeeehhhhccccchhhHHHHHHHHhhCchhhhhhhhcCchhhcCcceeEEEEecC-CCCCHHHHHHHHHHc
Confidence            999999999999999999999999999999999999999999999999999999999999975 458889999988763

>PLN02654 acetate-CoA ligase

Probab=100.00  E-value=6.8e-36  Score=259.26  Aligned_cols=198  Identities=23%  Similarity=0.338  Sum_probs=173.4

Q ss_pred             CHhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC---c-------
Q psy13807          1 MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI---K-------   70 (204)
Q Consensus         1 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~---~-------   70 (204)
                      +++++|+++++|++.++|++++.|++......     ...++++||.++++|+++++++++++.+.+|.   +       
T Consensus       360 ~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-----~~~~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~  434 (666)
T PLN02654        360 RCWDIVDKYKVTIFYTAPTLVRSLMRDGDEYV-----TRHSRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQ  434 (666)
T ss_pred             HHHHHHHHhCCeEEEeCHHHHHHHHhhCcccc-----ccCChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccc
Confidence            37899999999999999999999988653221     01568899999999999999999999998872   1       


Q ss_pred             ---------------------------ceEEEEECCCCCcCCCCCeeEEEEEe--CcccccccCCcccccC-----CCCc
Q psy13807         71 ---------------------------HLIVKVVDKKGNIVPMGMCGEVCYRG--YNVMLGYYGEENKILE-----NDEW  116 (204)
Q Consensus        71 ---------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~--~~~~~~y~~~~~~~~~-----~~~~  116 (204)
                                                 ++.++|+|++|++++.++.|+|++++  |+++.+||++++.+..     .+||
T Consensus       435 TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~~~~~~~Gel~v~~~~p~~~~gy~~~~~~~~~~~~~~~~g~  514 (666)
T PLN02654        435 TETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKEIEGECSGYLCVKKSWPGAFRTLYGDHERYETTYFKPFAGY  514 (666)
T ss_pred             cccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCCCCCCCceEEEEcCCCchhhhhhcCChHHHHHhhhhcCCCE
Confidence                                       67788999999999999999999998  6899999999987654     3799


Q ss_pred             eeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH--
Q psy13807        117 FPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ--  194 (204)
Q Consensus       117 ~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~--  194 (204)
                      |+|||++++|+||+++++||+||+||++|++|+|.|||+++.+||+|.+++|++++++..++.+++||++.++...+.  
T Consensus       515 ~~TGD~~~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vvl~~~~~~~~~l  594 (666)
T PLN02654        515 YFSGDGCSRDKDGYYWLTGRVDDVINVSGHRIGTAEVESALVSHPQCAEAAVVGIEHEVKGQGIYAFVTLVEGVPYSEEL  594 (666)
T ss_pred             EEeCceEEECCCCcEEEeeeccCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEeeEcCCCCeEEEEEEEECCCCCCCHHH
Confidence            999999999999999999999999999999999999999999999999999999999988999999999998765544  


Q ss_pred             -HHHHHHHhc
Q psy13807        195 -DDIKTYCKG  203 (204)
Q Consensus       195 -~~l~~~l~~  203 (204)
                       ++|++++++
T Consensus       595 ~~~l~~~~~~  604 (666)
T PLN02654        595 RKSLILTVRN  604 (666)
T ss_pred             HHHHHHHHHH
Confidence             256666554

>PTZ00237 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=8.9e-36  Score=257.78  Aligned_cols=186  Identities=23%  Similarity=0.274  Sum_probs=163.6

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      ++++++++++|.+.++|++++.|++.........  ...++++||.++++|+++++++.+++.+.+|.+           
T Consensus       341 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~~--~~~~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~  418 (647)
T PTZ00237        341 LWNTIEKHKVTHTLTLPKTIRYLIKTDPEATIIR--SKYDLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIG  418 (647)
T ss_pred             HHHHHHHhCeEEEEeCHHHHHHHHhhCccccccc--cccCcchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhC
Confidence            7899999999999999999999987532210000  014688999999999999999999999877643           


Q ss_pred             ----------------------ceEEEEECCCCCcCCCCCeeEEEEEeC---cccccccCCcccccC----CCCceeccc
Q psy13807         71 ----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGY---NVMLGYYGEENKILE----NDEWFPSGD  121 (204)
Q Consensus        71 ----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~---~~~~~y~~~~~~~~~----~~~~~~TGD  121 (204)
                                            ++.++++|++|++++.|+.|||++++|   +++.|||++++.+..    .+|||+|||
T Consensus       419 ~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~ge~GEl~v~~p~~p~~~~gy~~~~~~~~~~f~~~~g~~~TGD  498 (647)
T PTZ00237        419 ITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELNVNEIGEVAFKLPMPPSFATTFYKNDEKFKQLFSKFPGYYNSGD  498 (647)
T ss_pred             hhhhccCCCCCCCCCCCccCcCCceEEEECCCCCCCCCCCceEEEEeccCCchhhCceeCCHHHHHHHHhCCCCEEECCc
Confidence                                  566889999999999999999999986   788999999887654    379999999


Q ss_pred             eEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCC
Q psy13807        122 FFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG  189 (204)
Q Consensus       122 ~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~  189 (204)
                      ++++|++|+++|+||+||+||++|++|+|.|||++|.+||.|.+++|++++++..++.+++||++.++
T Consensus       499 lg~~d~dG~l~i~GR~dd~i~~~G~rI~p~eIE~~l~~~p~V~eaavvg~~~~~~g~~~~a~Vv~~~~  566 (647)
T PTZ00237        499 LGFKDENGYYTIVSRSDDQIKISGNKVQLNTIETSILKHPLVLECCSIGIYDPDCYNVPIGLLVLKQD  566 (647)
T ss_pred             EEEECCCCeEEEEeccCCEEEECCEEeCHHHHHHHHHhCCCceeeEEEeeEcCCCCCEEEEEEEeccC
Confidence            99999999999999999999999999999999999999999999999999999888999999999843

>PRK07788 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.2e-35  Score=247.51  Aligned_cols=195  Identities=35%  Similarity=0.512  Sum_probs=176.4

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCC--CCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc---------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQP--LTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK---------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~---------   70 (204)
                      +++.++++++|.+.++|++++.+++....  ..       ..++++|.+++||+++++++.+++.+.++..         
T Consensus       287 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~-------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE  359 (549)
T PRK07788        287 TLEDIAKHKATALVVVPVMLSRILDLGPEVLAK-------YDTSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTE  359 (549)
T ss_pred             HHHHHHHhCCcEEEEHHHHHHHHHhCcccccCC-------CCCCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcch
Confidence            67889999999999999999999886543  23       4678999999999999999999998876643         


Q ss_pred             ------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEe
Q psy13807         71 ------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILH  126 (204)
Q Consensus        71 ------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~  126 (204)
                                              ++.++++|++|++++.|+.|||+++|++++.||++++.. ...+|||+|||+++++
T Consensus       360 ~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~-~~~~g~~~TGDl~~~~  438 (549)
T PRK07788        360 VAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGVVGRIFVGNGFPFEGYTDGRDK-QIIDGLLSSGDVGYFD  438 (549)
T ss_pred             hchhhccChhhhhhcCCCcccCCCCcEEEEECCCcCCCCCCCeEEEEEeCCCccccccCCCcc-cccCCceecCceEEEc
Confidence                                    568899999999999999999999999999999998776 3357999999999999


Q ss_pred             cCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807        127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK  204 (204)
Q Consensus       127 ~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  204 (204)
                      ++|++++.||.||+||++|++|+|.+||+++.++|+|.+++|++.+++..++.++++|++.++...+.++++++|+++
T Consensus       439 ~~g~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~  516 (549)
T PRK07788        439 EDGLLFVDGRDDDMIVSGGENVFPAEVEDLLAGHPDVVEAAVIGVDDEEFGQRLRAFVVKAPGAALDEDAIKDYVRDN  516 (549)
T ss_pred             CCCCEEEeccCcceEEECCEEECHHHHHHHHHhCCCeeEEEEECCcCcccccEEEEEEEeCCCCCCCHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999998888999999999887778889999988763

>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=100.00  E-value=6.4e-35  Score=247.46  Aligned_cols=194  Identities=44%  Similarity=0.753  Sum_probs=174.6

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCC-ceEEEEeCCCCCHHHHHHHHHHhCCc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSS-PVIALTAGAPCSPTLFNKIRDTFGIK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~-l~~~~~~G~~~~~~~~~~~~~~~g~~----------   70 (204)
                      ++..+.++++|++.++|+++..++.+.....       ..+++ +|.+++||+++++++.+++.+.|+..          
T Consensus       256 ~~~~i~~~~~t~~~~vPt~~~~ll~~~~~~~-------~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE  328 (534)
T COG0318         256 VLWLIEKYKVTVLSGVPTFLRELLDNPEKDD-------DDLSSSLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTE  328 (534)
T ss_pred             HHHHHHHhcceEEecchHHHHHHHhCCccCc-------cccccceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccc
Confidence            5778899999999999999999998877665       44555 99999999999999999999998732          


Q ss_pred             -------------------------ceEEEEECCCCC-cCCCCCeeEEEEEeCcccccccCCcccccC--C-CCceeccc
Q psy13807         71 -------------------------HLIVKVVDKKGN-IVPMGMCGEVCYRGYNVMLGYYGEENKILE--N-DEWFPSGD  121 (204)
Q Consensus        71 -------------------------~~~v~i~d~~g~-~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~-~~~~~TGD  121 (204)
                                               +++++|+|+++. ++| |+.|||+++||+++.|||++|+.+..  . +|||+|||
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~p-g~vGei~irgp~v~~GY~~~pe~t~~~f~~~gW~~TGD  407 (534)
T COG0318         329 TSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLP-GEVGEIWVRGPNVMKGYWNRPEATAEAFDEDGWLRTGD  407 (534)
T ss_pred             cCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCC-CCceEEEEECchhhhhhcCChHHHHHhhccCCeeeecc
Confidence                                     368889998765 555 89999999999999999999988876  3 49999999


Q ss_pred             eEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCC--CCCCHHHHHH
Q psy13807        122 FFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG--ASLTQDDIKT  199 (204)
Q Consensus       122 ~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~--~~~~~~~l~~  199 (204)
                      ++++|++|+++|.||.+|+|+++|++|+|.+||+++.++|.|.+++|++++++..|+.++|+|+++++  ...+.++|++
T Consensus       408 lg~~d~~G~l~i~gR~kd~I~~gG~ni~p~eiE~~l~~~~~V~~aavvgvpd~~~Ge~~~a~v~~~~~~~~~~~~~~i~~  487 (534)
T COG0318         408 LGYVDEDGYLYIVGRLKDLIISGGENIYPEEIEAVLAEHPAVAEAAVVGVPDERWGERVVAVVVLKPGGDAELTAEELRA  487 (534)
T ss_pred             eEEEcCCccEEEEeccceEEEeCCeEECHHHHHHHHHhCCCcceEEEEeCCCCccCceEEEEEEEcCCCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999876  3558899999


Q ss_pred             HHhc
Q psy13807        200 YCKG  203 (204)
Q Consensus       200 ~l~~  203 (204)
                      +|+.
T Consensus       488 ~~~~  491 (534)
T COG0318         488 FLRK  491 (534)
T ss_pred             HHHh
Confidence            8875

>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase

Probab=100.00  E-value=1.3e-34  Score=249.74  Aligned_cols=198  Identities=26%  Similarity=0.397  Sum_probs=173.0

Q ss_pred             CHhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC---c-------
Q psy13807          1 MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI---K-------   70 (204)
Q Consensus         1 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~---~-------   70 (204)
                      +++++++++++|++.++|++++.|.+.......     ..++++||.++++|+++++++.+++.+.++.   +       
T Consensus       321 ~~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~-----~~~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~  395 (625)
T TIGR02188       321 RFWEIIEKHKVTIFYTAPTAIRALMRLGDEWVK-----KHDLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQ  395 (625)
T ss_pred             HHHHHHHHhCCeEEEeCHHHHHHHHhcCCcccc-----cCCccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccc
Confidence            378999999999999999999999886543220     1468899999999999999999999887652   1       


Q ss_pred             ---------------------------ceEEEEECCCCCcCC-CCCeeEEEEEe--CcccccccCCcccccC-----CCC
Q psy13807         71 ---------------------------HLIVKVVDKKGNIVP-MGMCGEVCYRG--YNVMLGYYGEENKILE-----NDE  115 (204)
Q Consensus        71 ---------------------------~~~v~i~d~~g~~~~-~~~~Gel~v~~--~~~~~~y~~~~~~~~~-----~~~  115 (204)
                                                 ++.++++|++|++++ .|+.|||++++  |+++.|||++++.+..     .+|
T Consensus       396 TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g~~~~~~g~~GeL~v~~p~p~~~~gy~~~~~~~~~~~~~~~~g  475 (625)
T TIGR02188       396 TETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEGNPVEGPGEGGYLVIKQPWPGMLRTIYGDHERFVDTYFSPFPG  475 (625)
T ss_pred             cccCCceeecCCCCCCcCCCcccCCcCCceEEEECCCCCCCCCCCCeEEEEEccCCCcccccccCChHHHHHHHhccCCC
Confidence                                       677889999999999 99999999999  5899999999876544     478


Q ss_pred             ceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH-
Q psy13807        116 WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ-  194 (204)
Q Consensus       116 ~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~-  194 (204)
                      ||+|||++++|++|+++++||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...+. 
T Consensus       476 ~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~~~~~g~~~~a~vv~~~~~~~~~~  555 (625)
T TIGR02188       476 YYFTGDGARRDKDGYIWITGRVDDVINVSGHRLGTAEIESALVSHPAVAEAAVVGIPDDIKGQAIYAFVTLKDGYEPDDE  555 (625)
T ss_pred             EEECCceEEEcCCCcEEEEecccCEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEeCCCCCCCHH
Confidence            9999999999999999999999999999999999999999999999999999999999888999999999988765543 


Q ss_pred             --HHHHHHHhc
Q psy13807        195 --DDIKTYCKG  203 (204)
Q Consensus       195 --~~l~~~l~~  203 (204)
                        ++|+++|++
T Consensus       556 ~~~~l~~~~~~  566 (625)
T TIGR02188       556 LRKELRKHVRK  566 (625)
T ss_pred             HHHHHHHHHHh
Confidence              567777764

This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.

>KOG1175|consensus

Probab=100.00  E-value=3.9e-35  Score=245.28  Aligned_cols=196  Identities=30%  Similarity=0.380  Sum_probs=173.8

Q ss_pred             CHhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC-c---------
Q psy13807          1 MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI-K---------   70 (204)
Q Consensus         1 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~-~---------   70 (204)
                      ++++++.+|++|.+++.|+.++.|.+......     ..+++++||.+.+.|+|+.++.++|+.+.++. +         
T Consensus       322 ~~~~~v~k~~it~l~t~pt~~r~l~~~~~~~~-----~~~~~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtE  396 (626)
T KOG1175|consen  322 RIWKILDKYKVTVLYTAPTAYRLLRRLGQEDV-----TSYSLKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTE  396 (626)
T ss_pred             hhhhhHhhcceEEEEeccHHHHHHHHhccccc-----cccccceEEEEeecCccCCcchHHHHHHhcCccchhhceeeec
Confidence            47899999999999999999998888765544     11455789999999999999999999999887 2         


Q ss_pred             -------------------------ceEEEEECCCCCcCCCC-CeeEEEEEeC---cccccccCCcccccC-----CCCc
Q psy13807         71 -------------------------HLIVKVVDKKGNIVPMG-MCGEVCYRGY---NVMLGYYGEENKILE-----NDEW  116 (204)
Q Consensus        71 -------------------------~~~v~i~d~~g~~~~~~-~~Gel~v~~~---~~~~~y~~~~~~~~~-----~~~~  116 (204)
                                               ++.+.|.|++|++++.+ ..|+|+++.+   +++++||++++....     .+|+
T Consensus       397 tG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~~~~~G~l~~~~~~P~~~~r~~~~n~erf~~~yf~k~pg~  476 (626)
T KOG1175|consen  397 TGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPPSTGNGELRLKPPWPPGMFRTLWGNHERFRAAYFKKFPGY  476 (626)
T ss_pred             cCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCCCCceeEEEEeCCCCccccccccCCHHHhhhhhcccCCce
Confidence                                     78999999999999987 8899999974   889999999995544     5899


Q ss_pred             eeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHH
Q psy13807        117 FPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDD  196 (204)
Q Consensus       117 ~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~  196 (204)
                      |.|||.+++|+||+++++||.||+||++|.|+++.|||+++.+||.|.|++|++.+++..|+.+.|||+++++ ..+.++
T Consensus       477 y~tGD~~~rd~dGY~~i~GR~DDviNvsGhRigtaEIE~al~~hp~VaEsAvVg~p~~~~ge~v~aFvvl~~g-~~~~~~  555 (626)
T KOG1175|consen  477 YFTGDGGRRDEDGYYWILGRVDDVINVSGHRIGTAEIESALVEHPAVAESAVVGSPDPIKGEVVLAFVVLKSG-SHDPEQ  555 (626)
T ss_pred             EEecCceEEcCCceEEEEecccccccccceeecHHHHHHHHhhCcchhheeeecCCCCCCCeEEEEEEEEcCC-CCChHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999998 444455


Q ss_pred             HHHHHh
Q psy13807        197 IKTYCK  202 (204)
Q Consensus       197 l~~~l~  202 (204)
                      |++.|+
T Consensus       556 L~kel~  561 (626)
T KOG1175|consen  556 LTKELV  561 (626)
T ss_pred             HHHHHH
Confidence            555443

>PRK07529 AMP-binding domain protein; Validated

Probab=100.00  E-value=3.9e-34  Score=247.09  Aligned_cols=195  Identities=33%  Similarity=0.545  Sum_probs=171.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      ++++++++++|.+.++|+++..|++.... .       .+++++|.+++||+++++++.+++.+.+|..           
T Consensus       300 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~-~-------~~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~  371 (632)
T PRK07529        300 FWKIVERYRINFLSGVPTVYAALLQVPVD-G-------HDISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEAT  371 (632)
T ss_pred             HHHHHHHhCCeEEEeHHHHHHHHHhCccc-C-------CCccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccC
Confidence            57899999999999999999999876432 1       3678999999999999999999999887654           


Q ss_pred             ----------------------ceEEEE--ECCCC---CcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccc
Q psy13807         71 ----------------------HLIVKV--VDKKG---NIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGD  121 (204)
Q Consensus        71 ----------------------~~~v~i--~d~~g---~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD  121 (204)
                                            ++.+++  .|++|   .+++.|+.|||+++||+++.||++.+.....  .++||+|||
T Consensus       372 ~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~~~~~g~~Gel~v~gp~v~~GY~~~~~~~~~~~~~gw~~TGD  451 (632)
T PRK07529        372 CVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLRDCAVDEVGVLCIAGPNVFSGYLEAAHNKGLWLEDGWLNTGD  451 (632)
T ss_pred             cccccCCccccccCCCcccccCCceEEEEEcCCCCcccccCCCCCceEEEEECCCccccccCCccccccccCCCceEcCc
Confidence                                  344555  47777   7899999999999999999999987654433  578999999


Q ss_pred             eEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy13807        122 FFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYC  201 (204)
Q Consensus       122 ~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  201 (204)
                      ++++++||++++.||.||+||++|.+|+|.+||+.|.++|+|.+++|++.+++..++.++++|++.++...+.++++++|
T Consensus       452 lg~~d~dG~l~i~GR~~d~i~~~G~~i~p~eIE~~l~~~p~V~~a~vvg~~d~~~ge~~~a~v~l~~~~~~~~~~l~~~~  531 (632)
T PRK07529        452 LGRIDADGYFWLTGRAKDLIIRGGHNIDPAAIEEALLRHPAVALAAAVGRPDAHAGELPVAYVQLKPGASATEAELLAFA  531 (632)
T ss_pred             EEEEcCCceEEEEecccCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceeEEEEEEcCCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998889999999999988888888999888


Q ss_pred             hcC
Q psy13807        202 KGK  204 (204)
Q Consensus       202 ~~~  204 (204)
                      +++
T Consensus       532 ~~~  534 (632)
T PRK07529        532 RDH  534 (632)
T ss_pred             HHh
Confidence            753

>PRK00174 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=2.8e-34  Score=248.24  Aligned_cols=197  Identities=26%  Similarity=0.403  Sum_probs=172.6

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC---c--------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI---K--------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~---~--------   70 (204)
                      ++++|+++++|.+.++|++++.|++.......     ..++++||.++++|+++++++.+++.+.++.   +        
T Consensus       331 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~-----~~~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~T  405 (637)
T PRK00174        331 FWEVIDKHKVTIFYTAPTAIRALMKEGDEHPK-----KYDLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQT  405 (637)
T ss_pred             HHHHHHhcCCeEEeecHHHHHHHHhcCCcccc-----cCCccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEeccccc
Confidence            68899999999999999999999876543210     1467899999999999999999999887651   1        


Q ss_pred             --------------------------ceEEEEECCCCCcCCCCCeeEEEEEe--CcccccccCCcccccC-----CCCce
Q psy13807         71 --------------------------HLIVKVVDKKGNIVPMGMCGEVCYRG--YNVMLGYYGEENKILE-----NDEWF  117 (204)
Q Consensus        71 --------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~--~~~~~~y~~~~~~~~~-----~~~~~  117 (204)
                                                ++.++++|++|++++.|+.|||++++  |+++.|||++++.+..     .+|||
T Consensus       406 E~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~p~~~~gy~~~~~~~~~~~~~~~~g~~  485 (637)
T PRK00174        406 ETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNPLEGGEGGNLVIKDPWPGMMRTIYGDHERFVKTYFSTFKGMY  485 (637)
T ss_pred             ccCCceEecCCCCCCcCCCcccCCCCCceEEEECCCCCCCCCCCcEEEEEcCCCCcccccccCCHHHHHHhhhcCCCCEE
Confidence                                      67888999999999999999999999  6899999999886654     47899


Q ss_pred             eccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC---H
Q psy13807        118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT---Q  194 (204)
Q Consensus       118 ~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~---~  194 (204)
                      +|||++++|+||+++++||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...+   .
T Consensus       486 ~TGDl~~~d~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~~~V~~~~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~  565 (637)
T PRK00174        486 FTGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKVAEAAVVGRPDDIKGQGIYAFVTLKGGEEPSDELR  565 (637)
T ss_pred             ECCceEEEcCCCcEEEEEecccEEEeCCEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCeEEEEEEEECCCCCCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988899999999998775544   4


Q ss_pred             HHHHHHHhc
Q psy13807        195 DDIKTYCKG  203 (204)
Q Consensus       195 ~~l~~~l~~  203 (204)
                      ++|+++|++
T Consensus       566 ~~l~~~l~~  574 (637)
T PRK00174        566 KELRNWVRK  574 (637)
T ss_pred             HHHHHHHHh
Confidence            577777764

>PLN03051 acyl-activating enzyme; Provisional

Probab=100.00  E-value=2.3e-34  Score=242.35  Aligned_cols=195  Identities=17%  Similarity=0.148  Sum_probs=161.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccC--CCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC--Cc-------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQ--PLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG--IK-------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~--~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g--~~-------   70 (204)
                      +++.|+++++|++.++|+++..|++...  ...       .++++||.+++||+++++++.+++.+.++  ..       
T Consensus       200 ~~~~i~~~~vt~~~~vP~~~~~l~~~~~~~~~~-------~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~  272 (499)
T PLN03051        200 FGKFVQDAGVTVLGLVPSIVKAWRHTGAFAMEG-------LDWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGG  272 (499)
T ss_pred             HHHHHHHhCCcEEEeCHHHHHHHHhcCcccccc-------CCchhheEEEecCCCCCHHHHHHHHHhccccceeEeeecc
Confidence            6899999999999999999999877543  222       46789999999999999999887766221  11       


Q ss_pred             --------------------------ceEEEEECCCCCcCCCC--CeeEEEEEeCcc--cccccCCcccccCCCC-----
Q psy13807         71 --------------------------HLIVKVVDKKGNIVPMG--MCGEVCYRGYNV--MLGYYGEENKILENDE-----  115 (204)
Q Consensus        71 --------------------------~~~v~i~d~~g~~~~~~--~~Gel~v~~~~~--~~~y~~~~~~~~~~~~-----  115 (204)
                                                ++.++|+|++|++++.|  +.|||+++||.+  +.|||+++......++     
T Consensus       273 TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~g~~~~~g~~~~Gel~v~g~~~~~~~gy~~~~~~~~~~~g~~~~~  352 (499)
T PLN03051        273 TELASGYISSTLLQPQAPGAFSTASLGTRFVLLNDNGVPYPDDQPCVGEVALAPPMLGASDRLLNADHDKVYYKGMPMYG  352 (499)
T ss_pred             ccccceeecccccCCCCCccccCCCCCceEEEECCCCCCCCCCCCcceEEEEecCcCCCCccccCCcccceeeecCCccc
Confidence                                      56788999999999988  479999999976  5799976532111223     


Q ss_pred             -----ceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhc-CCCcceEEEEeeeCCCCC-ceEEEEE---E
Q psy13807        116 -----WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT-HPDVVEAQVYGVPDERLG-EVVVANI---E  185 (204)
Q Consensus       116 -----~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~-~~~V~~~~v~~~~~~~~~-~~~~a~v---~  185 (204)
                           ||+|||++++|+||+++|.||.||+||++|++|+|.|||++|.+ ||+|.+++|++++++..+ +.++++|   +
T Consensus       353 ~~~~~~~~TGDlg~~d~dG~l~~~gR~~d~ik~~G~~v~p~EIE~~l~~~~p~V~~aavvg~~d~~~g~~~~~a~v~~~v  432 (499)
T PLN03051        353 SKGMPLRRHGDIMKRTPGGYFCVQGRADDTMNLGGIKTSSVEIERACDRAVAGIAETAAVGVAPPDGGPELLVIFLVLGE  432 (499)
T ss_pred             cCCcceeecCCeEEECCCCcEEEEeccCCEEeeCCEECCHHHHHHHHHhcCCCcceEEEEEecCCCCCceEEEEEEEcce
Confidence                 68999999999999999999999999999999999999999986 999999999999998888 6899998   7


Q ss_pred             eCCCC-CCCHHHHHHHHhc
Q psy13807        186 LKPGA-SLTQDDIKTYCKG  203 (204)
Q Consensus       186 ~~~~~-~~~~~~l~~~l~~  203 (204)
                      +.++. ..+.++++++|++
T Consensus       433 ~~~~~~~~~~~~l~~~~~~  451 (499)
T PLN03051        433 EKKGFDQARPEALQKKFQE  451 (499)
T ss_pred             ecccccccchHHHHHHHHH
Confidence            77664 4667778777653

>TIGR02316 propion_prpE propionate--CoA ligase

Probab=100.00  E-value=2.9e-34  Score=247.76  Aligned_cols=197  Identities=24%  Similarity=0.298  Sum_probs=168.8

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      ++++++++++|.++++|++++.|.+......     ...++++||.+++||+++++++.+++.+.+|..           
T Consensus       318 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-----~~~~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~  392 (628)
T TIGR02316       318 WWSIVERYGVRTMFSAPTAIRVLKKQDAAWL-----RKHDLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETG  392 (628)
T ss_pred             HHHHHHHhCCeEEEeCHHHHHHHHhcCCccc-----ccCCccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccC
Confidence            6889999999999999999998887643211     015689999999999999999999998876532           


Q ss_pred             -------------------------ceEEEEECC-CCCcCCCCCeeEEEEEeC---cccccccCCcccccC------CCC
Q psy13807         71 -------------------------HLIVKVVDK-KGNIVPMGMCGEVCYRGY---NVMLGYYGEENKILE------NDE  115 (204)
Q Consensus        71 -------------------------~~~v~i~d~-~g~~~~~~~~Gel~v~~~---~~~~~y~~~~~~~~~------~~~  115 (204)
                                               ++.++++|+ +|++++.|+.|||++++|   +.+.+||++++.+..      .++
T Consensus       393 ~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~~~~g~~Gel~v~gp~~~g~~~~~~~~~~~~~~~~~~~~~~~  472 (628)
T TIGR02316       393 WPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRPCGPNEKGVLTVVPPLPPGCLSTVWGDDARFLKTYWSHFKRP  472 (628)
T ss_pred             ceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCCCCCCCcEEEEEecCCCccccccccCChHHHHHhhhhcCCCC
Confidence                                     677888988 699999999999999998   567899998876543      467


Q ss_pred             ceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCC---
Q psy13807        116 WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASL---  192 (204)
Q Consensus       116 ~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~---  192 (204)
                      ||+|||++++|+||+++++||.||+||++|++|+|.|||++|.++|+|.+++|++++++..++.+++||++.++...   
T Consensus       473 ~~~TGD~g~~d~dG~l~i~GR~dd~ik~~G~rv~~~eIE~~l~~~p~V~ea~Vvg~~d~~~g~~~~~~vv~~~~~~~~~~  552 (628)
T TIGR02316       473 LYSSFDWGIRDEDGYTFILGRTDDVINVAGHRLGTREIEESVSSHPSVAEVAVVGVHDELKGQVAVVFAILKESDSAGDA  552 (628)
T ss_pred             EEECCceEEEcCCCcEEEEEcCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeeecCCCCeEEEEEEEEcCCcccccc
Confidence            99999999999999999999999999999999999999999999999999999999999889999999998865432   


Q ss_pred             -----CHHHHHHHHhc
Q psy13807        193 -----TQDDIKTYCKG  203 (204)
Q Consensus       193 -----~~~~l~~~l~~  203 (204)
                           ..++|++++++
T Consensus       553 ~~~~~~~~~i~~~~~~  568 (628)
T TIGR02316       553 HDPHAVETGMMDCVVR  568 (628)
T ss_pred             cchHHHHHHHHHHHHH
Confidence                 23567777664

This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.

>PLN02574 4-coumarate--CoA ligase-like

Probab=100.00  E-value=3e-34  Score=244.68  Aligned_cols=196  Identities=31%  Similarity=0.518  Sum_probs=175.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCC-CCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC-Cc---------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQP-LTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG-IK---------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g-~~---------   70 (204)
                      +++.|++|++|.+.++|++++.|.+.... ..       ..++++|.+++||+++++++.+++.+.++ ..         
T Consensus       284 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE  356 (560)
T PLN02574        284 MVKVIDRFKVTHFPVVPPILMALTKKAKGVCG-------EVLKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTE  356 (560)
T ss_pred             HHHHHHHcCCeEEecCCHHHHHHHhCcccccc-------CccccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccc
Confidence            68899999999999999999999886543 22       46789999999999999999999987763 21         


Q ss_pred             -------------------------ceEEEEEC-CCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccc
Q psy13807         71 -------------------------HLIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGD  121 (204)
Q Consensus        71 -------------------------~~~v~i~d-~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD  121 (204)
                                               ++.++|+| ++|++++.|+.|||+++|++++.||+++++.+..   .+|||+|||
T Consensus       357 ~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~~g~~Gei~v~g~~~~~GY~~~~~~t~~~~~~~g~~~TGD  436 (560)
T PLN02574        357 STAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLPPGNCGELWIQGPGVMKGYLNNPKATQSTIDKDGWLRTGD  436 (560)
T ss_pred             cCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCCCCCCeEEEEECcchhhhhcCChhHhhhhccCCCCcccce
Confidence                                     56778888 5699999999999999999999999999988765   589999999


Q ss_pred             eEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy13807        122 FFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYC  201 (204)
Q Consensus       122 ~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  201 (204)
                      +++++++|++++.||.+|+||++|++|++.+||++|..||+|.+++|++.+++..++.++++|+..++...+.+++++++
T Consensus       437 lg~~~~~G~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~  516 (560)
T PLN02574        437 IAYFDEDGYLYIVDRLKEIIKYKGFQIAPADLEAVLISHPEIIDAAVTAVPDKECGEIPVAFVVRRQGSTLSQEAVINYV  516 (560)
T ss_pred             EEEEECCCeEEEEecchhheEECCEEECHHHHHHHHHhCCCcceEEEEccccCCCCcceEEEEEeCCCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999988888899999998877777888898888


Q ss_pred             hcC
Q psy13807        202 KGK  204 (204)
Q Consensus       202 ~~~  204 (204)
                      +++
T Consensus       517 ~~~  519 (560)
T PLN02574        517 AKQ  519 (560)
T ss_pred             HHh
Confidence            763

>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase

Probab=100.00  E-value=8.1e-34  Score=245.84  Aligned_cols=197  Identities=19%  Similarity=0.230  Sum_probs=167.4

Q ss_pred             CHhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc----------
Q psy13807          1 MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------   70 (204)
Q Consensus         1 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------   70 (204)
                      +++++++++++|++.++|++++.+.+......     ...++++||.+++||+++++++.+++.+.++..          
T Consensus       347 ~~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~-----~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~T  421 (652)
T TIGR01217       347 VLWDIAERTGATLFGTSAKYVMACRKAGVHPA-----RTHDLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGT  421 (652)
T ss_pred             HHHHHHHHhCCeEEecCHHHHHHHHhcCCCcc-----ccCChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHH
Confidence            36899999999999998988887765421111     015789999999999999999999988766421          


Q ss_pred             -------------------------ceEEEEECCCCCcCCCCCeeEEEEEeC--cccccccCCcccccC-------CCCc
Q psy13807         71 -------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGY--NVMLGYYGEENKILE-------NDEW  116 (204)
Q Consensus        71 -------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~--~~~~~y~~~~~~~~~-------~~~~  116 (204)
                                               ++.++++|++|+++ .|+.|||++++|  +++.|||++++.+..       .+||
T Consensus       422 E~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd~~g~~~-~g~~GEl~v~gp~p~~~~gy~~~~~~t~~~~~~~~~~~g~  500 (652)
T TIGR01217       422 DICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDPEGKPV-TGEVGELVCTNPMPSMPIRFWNDPDGSKYRDAYFDTYPGV  500 (652)
T ss_pred             HHhccccCCCCCCCCcCCccCCCcCCCceEEECCCCCCC-CCCccEEEEecCCCccccceeCCCccchhHHhhhcCCCCE
Confidence                                     56788999999998 499999999996  688999999985541       3689


Q ss_pred             eeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH--
Q psy13807        117 FPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ--  194 (204)
Q Consensus       117 ~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~--  194 (204)
                      |+|||++++|+||+++++||+||+||++|++|+|.|||++|.+||+|.+++|++++++..++.+++||++.++...+.  
T Consensus       501 ~~tGDlg~~d~dG~l~i~GR~dd~I~~~G~ri~p~EIE~~l~~~p~V~eaavvg~~~~~~ge~~~afVv~~~~~~~~~~~  580 (652)
T TIGR01217       501 WRHGDWITLTPRGGIVIHGRSDSTLNPQGVRMGSAEIYNAVERLDEVRESLCIGQEQPDGGYRVVLFVHLAPGATLDDAL  580 (652)
T ss_pred             EEcCCcEEECCCCcEEEEecccCeEecCCEEcCHHHHHHHHHhCCCcceEEEEeeecCCCCEEEEEEEEECCCCCCCHHH
Confidence            999999999999999999999999999999999999999999999999999999999988999999999988766554  


Q ss_pred             -HHHHHHHhc
Q psy13807        195 -DDIKTYCKG  203 (204)
Q Consensus       195 -~~l~~~l~~  203 (204)
                       ++|+++|++
T Consensus       581 ~~~l~~~~~~  590 (652)
T TIGR01217       581 LDRIKRTIRA  590 (652)
T ss_pred             HHHHHHHHHh
Confidence             467777664

This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.

>PRK03584 acetoacetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.9e-33  Score=243.71  Aligned_cols=196  Identities=20%  Similarity=0.231  Sum_probs=168.6

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      ++++++++++|.+.++|++++.+.+......     ...++++||.+++||+++++++.+++.+.++..           
T Consensus       347 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-----~~~~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE  421 (655)
T PRK03584        347 LWDLAAEEGVTVFGTSAKYLDACEKAGLVPG-----ETHDLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTD  421 (655)
T ss_pred             HHHHHHHHCCEEEEcCHHHHHHHHhcCCCcc-----ccCChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHh
Confidence            6889999999999999999998876532211     015788999999999999999999998876311           


Q ss_pred             ------------------------ceEEEEECCCCCcCCCCCeeEEEEEeC--cccccccCCcccccC-------CCCce
Q psy13807         71 ------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGY--NVMLGYYGEENKILE-------NDEWF  117 (204)
Q Consensus        71 ------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~--~~~~~y~~~~~~~~~-------~~~~~  117 (204)
                                              ++.++++|++|+++ .|+.|||++++|  +++.|||++++.+..       .++||
T Consensus       422 ~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd~~g~~~-~g~~GeL~v~gp~p~~~~gy~~~~~~~~~~~~~~~~~~g~~  500 (655)
T PRK03584        422 ICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDGRPV-VGEVGELVCTKPFPSMPLGFWNDPDGSRYRDAYFDTFPGVW  500 (655)
T ss_pred             hhcccccCCCCCCcCCCccCCCcCCceeEEECCCCCCC-CCCceEEEEccCCCCCcceeeCCCccchHHHhhhccCCCEe
Confidence                                    66888999999999 799999999996  789999999875431       36899


Q ss_pred             eccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH---
Q psy13807        118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ---  194 (204)
Q Consensus       118 ~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~---  194 (204)
                      +|||++++|+||+++|+||.||+||++|.+|+|.|||++|.+||+|.+++|++.+++..++.+++||++.++...+.   
T Consensus       501 ~TGDl~~~d~dG~l~i~GR~dd~Ik~~G~rI~p~EIE~~l~~~p~V~ea~vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~  580 (655)
T PRK03584        501 RHGDWIEITEHGGVVIYGRSDATLNRGGVRIGTAEIYRQVEALPEVLDSLVIGQEWPDGDVRMPLFVVLAEGVTLDDALR  580 (655)
T ss_pred             ecCCeEEECCCCeEEEEeeccCeeecCcEEECHHHHHHHHHhCCCcceEEEEeeEcCCCCEEEEEEEEECCCCCCcHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888899999999987755553   


Q ss_pred             HHHHHHHhc
Q psy13807        195 DDIKTYCKG  203 (204)
Q Consensus       195 ~~l~~~l~~  203 (204)
                      ++|+++|++
T Consensus       581 ~~l~~~~~~  589 (655)
T PRK03584        581 ARIRTTIRT  589 (655)
T ss_pred             HHHHHHHHh
Confidence            467777664

>PRK05677 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.1e-33  Score=239.59  Aligned_cols=195  Identities=30%  Similarity=0.562  Sum_probs=175.4

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.++++|+++..+++......       ..++++|.+++||+++++++.++|.+.+|.+           
T Consensus       292 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------~~~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~  364 (562)
T PRK05677        292 MVKELGKWKFSGFVGLNTLFVALCNNEAFRK-------LDFSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETS  364 (562)
T ss_pred             HHHHHHHcCceEEecHHHHHHHHHhCccccc-------CChhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccC
Confidence            6789999999999999999998887644333       4567999999999999999999988876533           


Q ss_pred             ---------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEEEe
Q psy13807         71 ---------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILH  126 (204)
Q Consensus        71 ---------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~~~  126 (204)
                                           ++.++++|+++.++|.|+.|||+++|++++.||+++++.+..   .++||+|||+++++
T Consensus       365 ~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGDlg~~~  444 (562)
T PRK05677        365 PVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDGNELPLGEVGELCVKGPQVMKGYWQRPEATDEILDSDGWLKTGDIALIQ  444 (562)
T ss_pred             cceeecCccCCCCCccCccCCCCEEEEECCCCCCCCCCCCeEEEEecCccchhhcCCchhhhhccCCCCcccccceEEEC
Confidence                                 668889999999999999999999999999999999988766   58999999999999


Q ss_pred             cCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       127 ~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      ++|.+++.||.+|+||++|.+|+|.+||+.|.++|+|.+++|++++++..++.+++++++.++...+.+++++++++
T Consensus       445 ~~G~l~i~GR~~d~i~~~G~~i~p~eiE~~l~~~~~v~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~  521 (562)
T PRK05677        445 EDGYMRIVDRKKDMILVSGFNVYPNELEDVLAALPGVLQCAAIGVPDEKSGEAIKVFVVVKPGETLTKEQVMEHMRA  521 (562)
T ss_pred             CCCcEEEEecCcCeEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCccCCceEEEEEEeCCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998888889999999887767788888888875

>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed

Probab=100.00  E-value=5.3e-33  Score=236.38  Aligned_cols=195  Identities=34%  Similarity=0.533  Sum_probs=176.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|+++..|........       ..++++|.+++||+++++++.+++.+.++.+           
T Consensus       278 ~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~-------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~  350 (547)
T PRK13295        278 AAELIRTEGVTFTMASTPFLTDLTRAVKESG-------RPVSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENG  350 (547)
T ss_pred             HHHHHHHcCCcEEEecHHHHHHHHhcccccC-------CCcccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCC
Confidence            6788999999999999999999987665444       5688999999999999999999998876543           


Q ss_pred             -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC-CCCceeccceEEEe
Q psy13807         71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE-NDEWFPSGDFFILH  126 (204)
Q Consensus        71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~-~~~~~~TGD~~~~~  126 (204)
                                             ++.++++|+++++++.|+.|||++++++++.||+++++.+.. .+|||+|||+++++
T Consensus       351 ~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~g~~~TGD~~~~~  430 (547)
T PRK13295        351 AVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLPAGQIGRLQVRGCSNFGGYLKRPQLNGTDADGWFDTGDLARID  430 (547)
T ss_pred             CeeeccCCCcchhccCccccccCCcEEEEECCCCCCCCCCCCCeEEEEcCcccccccCCccccccCCCCCeecceEEEEc
Confidence                                   567889999999999999999999999999999999887766 67899999999999


Q ss_pred             cCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       127 ~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      ++|++++.||.+|++|++|.+++|.+||+++.++++|.+++|++.+++..++.++++|++.++...+.+++++++++
T Consensus       431 ~~g~l~~~gR~~~~i~~~G~~v~p~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~  507 (547)
T PRK13295        431 ADGYIRISGRSKDVIIRGGENIPVVEIEALLYRHPAIAQVAIVAYPDERLGERACAFVVPRPGQSLDFEEMVEFLKA  507 (547)
T ss_pred             CCceEEEEeccCCeEEECCEEECHHHHHHHHHhCCCeeeEEEEeeecCCCCcEEEEEEEeCCCCCCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999998888889999999987766777888888764

>PRK09274 peptide synthase; Provisional

Probab=100.00  E-value=1.4e-33  Score=240.11  Aligned_cols=193  Identities=21%  Similarity=0.295  Sum_probs=165.0

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC--c---------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI--K---------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~--~---------   70 (204)
                      +++.|+++++|.++++|++++.|.+......       .+++++|.+++||+++++++.+++.+.|+.  .         
T Consensus       254 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE  326 (552)
T PRK09274        254 LFAAIERYGVTNLFGSPALLERLGRYGEANG-------IKLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATE  326 (552)
T ss_pred             HHHHHHHcCCeEEeccHHHHHHHHHHhhhcC-------CCCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccc
Confidence            6889999999999999999999988654444       578899999999999999999999988742  2         


Q ss_pred             ---------------------------------ceEEEEECC---------CCCcCCCCCeeEEEEEeCcccccccCCcc
Q psy13807         71 ---------------------------------HLIVKVVDK---------KGNIVPMGMCGEVCYRGYNVMLGYYGEEN  108 (204)
Q Consensus        71 ---------------------------------~~~v~i~d~---------~g~~~~~~~~Gel~v~~~~~~~~y~~~~~  108 (204)
                                                       ++.++++|+         ++++++.|+.|||+++|++++.|||++++
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~ivd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~  406 (552)
T PRK09274        327 ALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRIIAISDAPIPEWDDALRLATGEIGEIVVAGPMVTRSYYNRPE  406 (552)
T ss_pred             cceeEeecchhhhccccccccCCCCcccCccCCCceEEEEeccccccccccccccCCCCCeeEEEEecCcccccccCChH
Confidence                                             244566663         46778999999999999999999999988


Q ss_pred             cccC-----CCC--ceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEE
Q psy13807        109 KILE-----NDE--WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVV  181 (204)
Q Consensus       109 ~~~~-----~~~--~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~  181 (204)
                      .+..     .++  ||+|||++++|++|++++.||.||+||++|.+|+|.+||++|.+||+|.+++|++.+++ .++.++
T Consensus       407 ~t~~~~~~~~~g~~w~~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~-~~~~~~  485 (552)
T PRK09274        407 ATRLAKIPDGQGDVWHRMGDLGYLDAQGRLWFCGRKAHRVETAGGTLYTIPCERIFNTHPGVKRSALVGVGVP-GAQRPV  485 (552)
T ss_pred             HhhhhhcccCCCCcEEEcCCEEEEccCCcEEEEeccCCeEEECCEEECcHHHHHHHHhCcccceeEEEEeCCC-CCceEE
Confidence            7654     245  99999999999999999999999999999999999999999999999999999999875 456788


Q ss_pred             EEEEeCCCCCCCHHHHHHHHh
Q psy13807        182 ANIELKPGASLTQDDIKTYCK  202 (204)
Q Consensus       182 a~v~~~~~~~~~~~~l~~~l~  202 (204)
                      ++|++.++...+.+++++.|+
T Consensus       486 ~~v~~~~~~~~~~~~l~~~l~  506 (552)
T PRK09274        486 LCVELEPGVACSKSALYQELR  506 (552)
T ss_pred             EEEEccCccccchHHHhhhhH
Confidence            999988776666555555544

>PRK06839 acyl-CoA synthetase; Validated

Probab=100.00  E-value=3e-33  Score=234.84  Aligned_cols=195  Identities=35%  Similarity=0.540  Sum_probs=175.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHH-------hCCc----
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDT-------FGIK----   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~-------~g~~----   70 (204)
                      ++++++++++|.+.++|++++.+++......       .+++++|.+++||+++++++.+++.+.       ||.+    
T Consensus       230 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~~~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~  302 (496)
T PRK06839        230 ALSMIEKHKVTVVMGVPTIHQALINCSKFET-------TNLQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSP  302 (496)
T ss_pred             HHHHHHhhCCeEEEehHHHHHHHHhCccccc-------CCCcccceEEECCCCCCHHHHHHHHHhCCeeEeeccCCCCCc
Confidence            6789999999999999999999988765444       578899999999999999999998764       2222    


Q ss_pred             ----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEEEe
Q psy13807         71 ----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILH  126 (204)
Q Consensus        71 ----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~~  126 (204)
                                            ++.++++|++++.++.|+.|||++++++++.||+++++.+..  .+|||+|||+++++
T Consensus       303 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~  382 (496)
T PRK06839        303 TVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVGEVGELLIRGPNVMKEYWNRPDATEETIQDGWLCTGDLARVD  382 (496)
T ss_pred             ceEecccccccccCCCCcccCCCceEEEECCCcCCCCCCCceEEEEECCCcchhhcCChHHHHHHHcCCCeeecceEEEc
Confidence                                  567889999999999999999999999999999999887765  68999999999999


Q ss_pred             cCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       127 ~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      ++|++++.||.+|+||++|.+|+|.+||+++..+|+|.+++|++.+++..++.++++|++.++...+.+++++++++
T Consensus       383 ~~g~~~~~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~  459 (496)
T PRK06839        383 EDGFVYIVGRKKEMIISGGENIYPLEVEQVINKLSDVYEVAVVGRQHVKWGEIPIAFIVKKSSSVLIEKDVIEHCRL  459 (496)
T ss_pred             CCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999888899999999988777788899988865

>PRK05852 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8.2e-33  Score=234.56  Aligned_cols=198  Identities=30%  Similarity=0.493  Sum_probs=174.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.++++|+++..+.+......     ....++++|.++++|+++++.+.+++.+.++..           
T Consensus       259 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----~~~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~  333 (534)
T PRK05852        259 FWDDIKAVGATWYTAVPTIHQILLERAATEP-----SGRKPAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEAT  333 (534)
T ss_pred             HHHHHHHcCCcEEEcChHHHHHHHhhccccc-----ccccCCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccc
Confidence            6789999999999999999999988654321     014578999999999999999999988765432           


Q ss_pred             ----------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceecc
Q psy13807         71 ----------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSG  120 (204)
Q Consensus        71 ----------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TG  120 (204)
                                                  ++.++++|++|++++.|+.|||+++|+.++.||+++++.+..  .++||+||
T Consensus       334 ~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~~g~~~~~g~~Gel~v~g~~v~~gY~~~~~~t~~~~~~g~~~TG  413 (534)
T PRK05852        334 HQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGLPLPAGAVGEVWLRGTTVVRGYLGDPTITAANFTDGWLRTG  413 (534)
T ss_pred             hhhhcCCccccccccCcccccccCCCCCCCeEEEECCCCCCCCCCCceEEEEecCcccchhcCCcccchhhhcCCCcccC
Confidence                                        567788999999999999999999999999999999988776  67899999


Q ss_pred             ceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHH
Q psy13807        121 DFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTY  200 (204)
Q Consensus       121 D~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~  200 (204)
                      |++++|+||++++.||.+|++|++|.+++|.+||+++.++|+|.+++|++.+++..++.++++|+..++...+.+++.++
T Consensus       414 D~~~~d~dG~l~~~gR~~d~i~~~G~~v~~~~iE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~vv~~~~~~~~~~~i~~~  493 (534)
T PRK05852        414 DLGSLSAAGDLSIRGRIKELINRGGEKISPERVEGVLASHPNVMEAAVFGVPDQLYGEAVAAVIVPRESAPPTAEELVQF  493 (534)
T ss_pred             ceEEEeCCCcEEEEecchhhEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcCcCceEEEEEEECCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998877889999999877666778888888


Q ss_pred             HhcC
Q psy13807        201 CKGK  204 (204)
Q Consensus       201 l~~~  204 (204)
                      |+++
T Consensus       494 ~~~~  497 (534)
T PRK05852        494 CRER  497 (534)
T ss_pred             HHHh
Confidence            8753

>PRK10524 prpE propionyl-CoA synthetase; Provisional

Probab=100.00  E-value=5.2e-33  Score=240.00  Aligned_cols=197  Identities=25%  Similarity=0.359  Sum_probs=168.0

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      ++++++++++|.+.++|++++.|.+......     ...++++||.+++||+++++++.+++.+.++.+           
T Consensus       319 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-----~~~~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~  393 (629)
T PRK10524        319 WWRIVEKYKVNRMFSAPTAIRVLKKQDPALL-----RKHDLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETG  393 (629)
T ss_pred             HHHHHHHcCceEEEeCHHHHHHHHhcCcccc-----cccChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEecccccccc
Confidence            6789999999999999999998877542211     014678999999999999999999998876532           


Q ss_pred             -------------------------ceEEEEECC-CCCcCCCCCeeEEEEEeC---cccccccCCcccccC------CCC
Q psy13807         71 -------------------------HLIVKVVDK-KGNIVPMGMCGEVCYRGY---NVMLGYYGEENKILE------NDE  115 (204)
Q Consensus        71 -------------------------~~~v~i~d~-~g~~~~~~~~Gel~v~~~---~~~~~y~~~~~~~~~------~~~  115 (204)
                                               ++.++++|+ +|++++.|+.|||++++|   +.+.+||++++.+..      .++
T Consensus       394 ~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~~~~g~~Gel~i~gp~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (629)
T PRK10524        394 WPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEPCGPNEKGVLVIEGPLPPGCMQTVWGDDDRFVKTYWSLFGRQ  473 (629)
T ss_pred             chhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCCCCCCCcEEEEEcCCCChhhcCCccCChHHHHHhhhccCCCc
Confidence                                     567889998 899999999999999998   577899998876543      358


Q ss_pred             ceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC--
Q psy13807        116 WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT--  193 (204)
Q Consensus       116 ~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~--  193 (204)
                      ||+|||++++|+||+++++||.||+||++|.+|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...+  
T Consensus       474 ~~~TGDl~~~d~dG~l~i~GR~dd~i~~~G~ri~p~eIE~~l~~~p~V~e~~vvg~~d~~~g~~~~~~vv~~~~~~~~~~  553 (629)
T PRK10524        474 VYSTFDWGIRDADGYYFILGRTDDVINVAGHRLGTREIEESISSHPAVAEVAVVGVKDALKGQVAVAFVVPKDSDSLADR  553 (629)
T ss_pred             EEEcCCcEEEcCCCcEEEEEEecCeEEeCCEEeCHHHHHHHHHhCCCcceEEEEccccCCCCeEEEEEEEECCCCccccc
Confidence            999999999999999999999999999999999999999999999999999999999988889999999998754332  


Q ss_pred             ------HHHHHHHHhc
Q psy13807        194 ------QDDIKTYCKG  203 (204)
Q Consensus       194 ------~~~l~~~l~~  203 (204)
                            .++|++++++
T Consensus       554 ~~~~~~~~~i~~~~~~  569 (629)
T PRK10524        554 EARLALEKEIMALVDS  569 (629)
T ss_pred             cchHHHHHHHHHHHHh
Confidence                  3456666654

>PRK06060 acyl-CoA synthetase; Validated

Probab=100.00  E-value=8e-33  Score=241.61  Aligned_cols=193  Identities=23%  Similarity=0.381  Sum_probs=168.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC-Cc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG-IK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g-~~----------   70 (204)
                      ++.+++++++|+++++|+++..+++...  .       ..++++|.+++||+++++++.+++.+.|+ ..          
T Consensus       228 ~~~~i~~~~~t~~~~~P~~l~~l~~~~~--~-------~~~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~  298 (705)
T PRK06060        228 AAILSARFGPSVLYGVPNFFARVIDSCS--P-------DSFRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEV  298 (705)
T ss_pred             HHHHHHhcCCeEEeeHHHHHHHHHHhcc--c-------ccccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeecccc
Confidence            4678899999999999999998887542  1       35789999999999999999999988774 22          


Q ss_pred             ----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEecC
Q psy13807         71 ----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHEN  128 (204)
Q Consensus        71 ----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~~  128 (204)
                                            ++.++++|++|++++.|+.|||+++|++++.|||++++.+...++||+|||++++++|
T Consensus       299 ~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~~GEl~i~g~~v~~GY~~~~~~~~~~~~~~~TGDl~~~~~d  378 (705)
T PRK06060        299 GQTFVSNRVDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGVEGDLWVRGPAIAKGYWNRPDSPVANEGWLDTRDRVCIDSD  378 (705)
T ss_pred             CceEEeccCCCCCcCcccccCCCcEEEEECCCCCCCCCCCceEEEEccchhhhhhhCCCcccccCCCcEECCeeEEECCC
Confidence                                  5678899999999999999999999999999999999877667899999999999999


Q ss_pred             CeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH---HHHHHHHhc
Q psy13807        129 GYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ---DDIKTYCKG  203 (204)
Q Consensus       129 g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~---~~l~~~l~~  203 (204)
                      |+++++||.||+||++|++|+|.+||+++.++++|.+++|++.+++..++.++++|+..++...+.   .+++++|++
T Consensus       379 G~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~~~i~~~l~~  456 (705)
T PRK06060        379 GWVTYRCRADDTEVIGGVNVDPREVERLIIEDEAVAEAAVVAVRESTGASTLQAFLVATSGATIDGSVMRDLHRGLLN  456 (705)
T ss_pred             ceEEEecccCceEEECCEEECHHHHHHHHHhCCCeeEEEEEeecCccCCeeEEEEEEeccccCcChHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998877889999999876644443   356666654

>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase

Probab=100.00  E-value=1e-32  Score=233.64  Aligned_cols=194  Identities=31%  Similarity=0.431  Sum_probs=173.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|++.++|++++.+.+......       ..++++|.+++||+++++.+.+++.+.+|.+           
T Consensus       265 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~  337 (527)
T TIGR02275       265 CFPLIERHKVTVTALVPPAVALWMQAASKSR-------YDLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGL  337 (527)
T ss_pred             HHHHHHHhCCeEEEecHHHHHHHHhCccccC-------CCccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccC
Confidence            5788999999999999999999887765444       5688999999999999999999998876543           


Q ss_pred             -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEE
Q psy13807         71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFI  124 (204)
Q Consensus        71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~  124 (204)
                                             +..++++|++|++++.|+.|||+++|++++.||+++++.+..   .++||+|||+++
T Consensus       338 ~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~g~~Gei~v~g~~~~~gY~~~~~~~~~~~~~dg~~~TGDl~~  417 (527)
T TIGR02275       338 VNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAPGETGMLLTRGPYTFRGYYKAPEHNAAAFDAEGFYYTGDLVR  417 (527)
T ss_pred             ccccCCCCccccccccCCCCCCCCceEEEECCCCCCCCCCCceEEEecCCccchhhcCChhHhHhhcCcCCCEEcCceEE
Confidence                                   356778898899999999999999999999999999887765   578999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      ++++|++++.||.+|+|+++|.+|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++ ..+..+|++++++
T Consensus       418 ~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~vv~~~~-~~~~~~l~~~l~~  495 (527)
T TIGR02275       418 LTPEGYIVVVGRAKDQINRGGEKIAAEEIENLLLAHPAVHDAALVSMPDELLGEKSCAFIVVRDP-ALKAAQLRRFLRE  495 (527)
T ss_pred             EcCCccEEEEecccceeecCCEEECHHHHHHHHHhCCCceEEEEEecCCcccccEEEEEEEECCC-CCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998888899999998765 4678889998875

Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.

>PRK13382 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-32  Score=233.89  Aligned_cols=195  Identities=32%  Similarity=0.457  Sum_probs=170.5

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|++++.+++.......     ..+++++|.+++||+++++++.+.|.+.+|.+           
T Consensus       276 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~-----~~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~  350 (537)
T PRK13382        276 TLDLIDRHRATGLAVVPVMFDRIMDLPAEVRN-----RYSGRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAG  350 (537)
T ss_pred             HHHHHHHhCCEEEEehHHHHHHHHcCCchhcc-----cCCccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccC
Confidence            57899999999999999999998875422110     03467899999999999999999998876533           


Q ss_pred             ----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC-CCCceeccceEEEec
Q psy13807         71 ----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE-NDEWFPSGDFFILHE  127 (204)
Q Consensus        71 ----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~-~~~~~~TGD~~~~~~  127 (204)
                                            ++.++++|+++++++.|+.|||++++++++.||+  ++.+.. .++||+|||++++++
T Consensus       351 ~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~--~~~~~~~~~g~~~TGDl~~~~~  428 (537)
T PRK13382        351 MIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTGEVGTIFVRNDTQFDGYT--SGSTKDFHDGFMASGDVGYLDE  428 (537)
T ss_pred             cceecChhHhccCCCCccccCcCcEEEEECCCCCCCCCCCeeEEEEEcCCcccCcc--ccchhhccCCCEeeCceEEEeC
Confidence                                  6788899999999999999999999999999998  333333 579999999999999


Q ss_pred             CCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        128 NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       128 ~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      +|++++.||.||+||++|.+|+|.+||+++.++|+|.+++|++.+++..++.++++|++.++...+.+++++++++
T Consensus       429 ~g~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~~~V~~~~v~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~l~~  504 (537)
T PRK13382        429 NGRLFVVGRDDEMIVSGGENVYPIEVEKTLATHPDVAEAAVIGVDDEQYGQRLAAFVVLKPGASATPETLKQHVRD  504 (537)
T ss_pred             CCcEEEeccccceeEECCEEECHHHHHHHHHhCCCEeeEEEEccCccccCCEEEEEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998888889999999987766778888888875

>PRK04319 acetyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.2e-32  Score=235.19  Aligned_cols=197  Identities=31%  Similarity=0.489  Sum_probs=171.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|+++++|++++.|.+......     ...+++++|.+++||+++++++.+++.+.+|.+           
T Consensus       287 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-----~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~  361 (570)
T PRK04319        287 WYRILEDYKVTVWYTAPTAIRMLMGAGDDLV-----KKYDLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETG  361 (570)
T ss_pred             HHHHHHHcCCeEEEeCHHHHHHHHhcCCccc-----ccCCcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccC
Confidence            6789999999999999999999987643211     014678999999999999999999998876543           


Q ss_pred             ----------------------ceEEEEECCCCCcCCCCCeeEEEEEe--CcccccccCCcccccC--CCCceeccceEE
Q psy13807         71 ----------------------HLIVKVVDKKGNIVPMGMCGEVCYRG--YNVMLGYYGEENKILE--NDEWFPSGDFFI  124 (204)
Q Consensus        71 ----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~--~~~~~~y~~~~~~~~~--~~~~~~TGD~~~  124 (204)
                                            ++.++++|++|.+++.|+.|||++++  ++++.|||++++.+..  .+|||+|||+++
T Consensus       362 ~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~~~GY~~~~~~~~~~~~~gw~~TGDl~~  441 (570)
T PRK04319        362 GIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPNRMGNLAIKKGWPSMMRGIWNNPEKYESYFAGDWYVSGDSAY  441 (570)
T ss_pred             CEEEecCCCCCCCCCcCcCCCCCCEEEEECCCCCCCCCCCceEEEEcCCCChHHhHhcCCHHHhhhhhcCCceEeCcEEE
Confidence                                  57788999999999999999999997  7899999999987766  578999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH---HHHHHHH
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ---DDIKTYC  201 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~---~~l~~~l  201 (204)
                      ++++|+++++||.+|+||.+|++|+|.+||+.+.++|+|.+++|++.+++..++.+++++++.++...+.   ++|+++|
T Consensus       442 ~~~~g~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~a~v~~~~~~~~~~~~~~~l~~~~  521 (570)
T PRK04319        442 MDEDGYFWFQGRVDDVIKTSGERVGPFEVESKLMEHPAVAEAGVIGKPDPVRGEIIKAFVALRPGYEPSEELKEEIRGFV  521 (570)
T ss_pred             ECCCeeEEEEecCCCEEEECCEEECHHHHHHHHhhCCCeeecceecccCcCCceEEEEEEEECCCCCCCHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888899999999887654433   4677766


Q ss_pred             hc
Q psy13807        202 KG  203 (204)
Q Consensus       202 ~~  203 (204)
                      ++
T Consensus       522 ~~  523 (570)
T PRK04319        522 KK  523 (570)
T ss_pred             HH
Confidence            54

>PRK07470 acyl-CoA synthetase; Validated

Probab=100.00  E-value=1.7e-32  Score=232.29  Aligned_cols=195  Identities=32%  Similarity=0.505  Sum_probs=173.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|++++.+.+......       ..++++|.+++||+++++.+.+++.+.+|..           
T Consensus       246 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~  318 (528)
T PRK07470        246 VWALVERHRVTNLFTVPTILKMLVEHPAVDR-------YDHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVT  318 (528)
T ss_pred             HHHHHHhcCCeEEechHHHHHHHHhCcCcCC-------CCCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccC
Confidence            6789999999999999999999987765444       5678999999999999999888876655422           


Q ss_pred             -----------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceec
Q psy13807         71 -----------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPS  119 (204)
Q Consensus        71 -----------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~T  119 (204)
                                                   ++.++++|++|++++.|+.|||+++++.++.||+++++.+..  .++||+|
T Consensus       319 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~T  398 (528)
T PRK07470        319 GNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDEGRELPPGETGEICVIGPAVFAGYYNNPEANAKAFRDGWFRT  398 (528)
T ss_pred             CceeecchhhccccccccceeeccCcccCCcEEEEECCCCCCCCCCCceEEEEeCCccchhhcCCHHHHHhhhcCCcEec
Confidence                                         245778899999999999999999999999999999887765  6899999


Q ss_pred             cceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHH
Q psy13807        120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKT  199 (204)
Q Consensus       120 GD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~  199 (204)
                      ||+++++++|++++.||.||++|++|.+++|.+||+.+..+++|.+++|++.+++..+..++++++..++...+.+++++
T Consensus       399 GDl~~~~~~g~l~~~GR~dd~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  478 (528)
T PRK07470        399 GDLGHLDARGFLYITGRASDMYISGGSNVYPREIEEKLLTHPAVSEVAVLGVPDPVWGEVGVAVCVARDGAPVDEAELLA  478 (528)
T ss_pred             ceeEEEccCCeEEEeCCccceEEeCCEEECHHHHHHHHHhCCCceEEEEEeccCcccCceeEEEEEECCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999887788899999988776678888888


Q ss_pred             HHhc
Q psy13807        200 YCKG  203 (204)
Q Consensus       200 ~l~~  203 (204)
                      +|++
T Consensus       479 ~l~~  482 (528)
T PRK07470        479 WLDG  482 (528)
T ss_pred             HHHH
Confidence            8775

>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated

Probab=100.00  E-value=1.9e-32  Score=232.68  Aligned_cols=189  Identities=22%  Similarity=0.307  Sum_probs=159.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC-Cc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG-IK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g-~~----------   70 (204)
                      +++.|+++++|.+.++|++++.|++......       ..+++||.+++||+++++++.+++.+.++ ..          
T Consensus       265 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~  337 (539)
T PRK06334        265 IVEMIDEAKVTFLGSTPVFFDYILKTAKKQE-------SCLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTEC  337 (539)
T ss_pred             HHHHHHHhCCcEEEecHHHHHHHHHhhhhcc-------cccccccEEEECCccCCHHHHHHHHHHCCCCeEEeccccccc
Confidence            6789999999999999999999988654433       56889999999999999999999988763 21          


Q ss_pred             -----------------------ceEEEEECCC-CCcCCCCCeeEEEEEeCcccccccCCcccccC----CCCceeccce
Q psy13807         71 -----------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYYGEENKILE----NDEWFPSGDF  122 (204)
Q Consensus        71 -----------------------~~~v~i~d~~-g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~----~~~~~~TGD~  122 (204)
                                             ++.++++|++ +.+++.|+.|||+++|++++.|||++++.+..    .++||+|||+
T Consensus       338 ~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~w~~TGD~  417 (539)
T PRK06334        338 SPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVSSGETGLVLTRGTSLFSGYLGEDFGQGFVELGGETWYVTGDL  417 (539)
T ss_pred             CceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCCCCceEEEEEecCcccccccCCcccccceeeCCceeEECCCE
Confidence                                   6778888865 78999999999999999999999999886543    3689999999


Q ss_pred             EEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcce------EEEEeeeCCCCCceEEEEEEeCCCCCCCHHH
Q psy13807        123 FILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVE------AQVYGVPDERLGEVVVANIELKPGASLTQDD  196 (204)
Q Consensus       123 ~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~------~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~  196 (204)
                      +++|++|++++.||.+|+||++|++|+|.|||++|.+||+|.+      ++|++.++..  ..++++++..    .+.++
T Consensus       418 g~~d~~G~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~~~v~~~~~~~~~~v~~~~~~~--~~~~~~~~~~----~~~~~  491 (539)
T PRK06334        418 GYVDRHGELFLKGRLSRFVKIGAEMVSLEALESILMEGFGQNAADHAGPLVVCGLPGEK--VRLCLFTTFP----TSISE  491 (539)
T ss_pred             EEECCCCeEEEEeccCCeEEECCEEECHHHHHHHHHHccCCccccccCceEEEcCCCCc--eEEEEEEecc----CChHH
Confidence            9999999999999999999999999999999999999999987      7777776432  2444555432    34677


Q ss_pred             HHHHHhc
Q psy13807        197 IKTYCKG  203 (204)
Q Consensus       197 l~~~l~~  203 (204)
                      ++++|++
T Consensus       492 ~~~~l~~  498 (539)
T PRK06334        492 VNDILKN  498 (539)
T ss_pred             HHHHHHh
Confidence            8877765

>PRK06145 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.1e-32  Score=230.00  Aligned_cols=195  Identities=32%  Similarity=0.555  Sum_probs=174.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|++++.++.......       ..++++|.+++||+++++.+.+++.+.|+..           
T Consensus       230 ~~~~i~~~~~t~~~~~P~~~~~ll~~~~~~~-------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~  302 (497)
T PRK06145        230 VLAAIERHRLTCAWMAPVMLSRVLTVPDRDR-------FDLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTET  302 (497)
T ss_pred             HHHHHHHhCCeEEEehHHHHHHHHcCCCccc-------cccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCccc
Confidence            6788999999999999999999987655444       5678999999999999999999998876321           


Q ss_pred             ------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEE
Q psy13807         71 ------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFI  124 (204)
Q Consensus        71 ------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~  124 (204)
                                              ++.+++.|+++.+++.|+.|||+++|++++.||+++++.+..  .++||+|||+++
T Consensus       303 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~Gy~~~~~~~~~~~~~~~~~TGDl~~  382 (497)
T PRK06145        303 CSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLPPNMKGEICMRGPKVTKGYWKDPEKTAEAFYGDWFRSGDVGY  382 (497)
T ss_pred             CCcceeccCccccccCCCcccCCCCceEEEECCCCCCCCCCCceEEEEECcchhhhhcCChHHHHHHHhCCCeeccceEE
Confidence                                    577888999999999999999999999999999999887765  578999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      ++++|++++.||.||+||++|.+++|.+||+.+..+|+|.+++|++.+++..++.+++++++.++...+..+++++|++
T Consensus       383 ~~~~g~l~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~  461 (497)
T PRK06145        383 LDEEGFLYLTDRKKDMIISGGENIASSEVERVIYELPEVAEAAVIGVHDDRWGERITAVVVLNPGATLTLEALDRHCRQ  461 (497)
T ss_pred             EcCCCcEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEecCCCccCceEEEEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998878889999999987666778888888875

>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase

Probab=100.00  E-value=4.9e-32  Score=230.01  Aligned_cols=195  Identities=31%  Similarity=0.489  Sum_probs=174.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|+++..+.+......       ..++++|.+++||+++++.+.+++.+.+|..           
T Consensus       276 ~~~~l~~~~vt~~~~~p~~~~~l~~~~~~~~-------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  348 (538)
T TIGR03208       276 AAELIRETGVTFTMASTPFLTDLCRAVKESG-------APVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENG  348 (538)
T ss_pred             HHHHHHHhCCeEEecCHHHHHHHHhchhccC-------CCCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCC
Confidence            5788999999999999999998877554333       4678999999999999999999988776532           


Q ss_pred             -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC-CCCceeccceEEEe
Q psy13807         71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE-NDEWFPSGDFFILH  126 (204)
Q Consensus        71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~-~~~~~~TGD~~~~~  126 (204)
                                             ++.++++|++|++++.|+.|||++++++++.||+++++.+.. .++||+|||+++++
T Consensus       349 ~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~TGD~~~~~  428 (538)
T TIGR03208       349 AVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQGETGRLLVRGCSNFGGYLKRPHLNSTDAEGWFDTGDLAFQD  428 (538)
T ss_pred             CccccCcccchhhccCcccccCCCCEEEEECCCCCCCcCCCCcEEEEecCcccccccCCcccccccCCCceeccceEEEC
Confidence                                   577889999999999999999999999999999999887655 67899999999999


Q ss_pred             cCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       127 ~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      ++|++++.||.+|++|++|.+|+|.+||+++.++|+|.+++|++.++...++.+.++|++.++...+..++++++++
T Consensus       429 ~~g~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~  505 (538)
T TIGR03208       429 AEGYIRINGRSKDVIIRGGENIPVVEIENLLYQHPAVAQVAIVAYPDERLGERACAVVVPKPGCTLDFAAMVAFLKA  505 (538)
T ss_pred             CCCcEEEEeccCceEEECCEEECHHHHHHHHhcCcceeeEEEEeccCCCCCceEEEEEEECCCCCCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999998888889999999987767788888888763

Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.

>PLN02246 4-coumarate--CoA ligase

Probab=100.00  E-value=3.5e-32  Score=230.87  Aligned_cols=196  Identities=28%  Similarity=0.448  Sum_probs=173.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|+++..|.+......       ..++++|.+++||+++++++.+++.+.++..           
T Consensus       264 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~  336 (537)
T PLN02246        264 LLELIQRHKVTIAPFVPPIVLAIAKSPVVEK-------YDLSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEA  336 (537)
T ss_pred             HHHHHHHhCceEEEcchHHHHHHhcCccccc-------cCccceeEEEEecCcCCHHHHHHHHHHcCCCeEecccccccc
Confidence            6789999999999999999999987655444       5678999999999999999999999876311           


Q ss_pred             ---------------------------ceEEEEECC-CCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceec
Q psy13807         71 ---------------------------HLIVKVVDK-KGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPS  119 (204)
Q Consensus        71 ---------------------------~~~v~i~d~-~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~T  119 (204)
                                                 ++.++++|+ .+++++.|+.|||+++|++++.||+++++.+..   .++||+|
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~~~~~~~~~~~~~T  416 (537)
T PLN02246        337 GPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGASLPRNQPGEICIRGPQIMKGYLNDPEATANTIDKDGWLHT  416 (537)
T ss_pred             CcccccccccCCCCccccCCccccccCCcEEEEecCCCCCcCCCCCceEEEEECCchhccccCCchhhhhcccCCCCeee
Confidence                                       345677885 588999999999999999999999999887765   5789999


Q ss_pred             cceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHH
Q psy13807        120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKT  199 (204)
Q Consensus       120 GD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~  199 (204)
                      ||+++++++|++++.||.||++|++|.+|+|.+||+.+.++|+|.+++|++.++...++.++++++..++...+.++|++
T Consensus       417 GD~~~~~~~g~l~~~GR~dd~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  496 (537)
T PLN02246        417 GDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLISHPSIADAAVVPMKDEVAGEVPVAFVVRSNGSEITEDEIKQ  496 (537)
T ss_pred             cceEEEeCCCeEEEEecccceEEECCEEECcHHHHHHHHhCCCeeEEEEEcccCccCCceeEEEEEeCCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998888888999999988776777888998


Q ss_pred             HHhcC
Q psy13807        200 YCKGK  204 (204)
Q Consensus       200 ~l~~~  204 (204)
                      +|+++
T Consensus       497 ~l~~~  501 (537)
T PLN02246        497 FVAKQ  501 (537)
T ss_pred             HHHhh
Confidence            88753

>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional

Probab=100.00  E-value=6.7e-32  Score=230.35  Aligned_cols=194  Identities=31%  Similarity=0.563  Sum_probs=172.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|+++..+++......       .+++++|.+++||+++++.+.++|.+.+|.+           
T Consensus       299 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------~~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  371 (562)
T PRK12492        299 FIKELGKWRFSALLGLNTLFVALMDHPGFKD-------LDFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETS  371 (562)
T ss_pred             HHHHHHHhCCceeeCcHHHHHHHHhCcCccc-------ccccceeEEEeccccCCHHHHHHHHHHhCCceeeccCccccC
Confidence            5678999999999999999999988765444       5678999999999999999999988776543           


Q ss_pred             ----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEEE
Q psy13807         71 ----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFIL  125 (204)
Q Consensus        71 ----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~~  125 (204)
                                            ++.++++|+++.+++.|+.|||+++|+.++.|||++++.+..   .++||+|||++++
T Consensus       372 ~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~g~~~TGD~g~~  451 (562)
T PRK12492        372 PVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLGERGELCIKGPQVMKGYWQQPEATAEALDAEGWFKTGDIAVI  451 (562)
T ss_pred             ceeeecCCcccccCCccceecCCCEEEEECCCCCCCCCCCceEEEEeCCccccccccCchhhhhcccCCCceecCcEEEE
Confidence                                  567889999999999999999999999999999999887765   4789999999999


Q ss_pred             ecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       126 ~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      +++|.+++.||.+|+++++|.+++|.+||+.+.++|.|.+++|++.++...++.+.++++..++ ..+.+++++++++
T Consensus       452 ~~~G~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~-~~~~~~i~~~~~~  528 (562)
T PRK12492        452 DPDGFVRIVDRKKDLIIVSGFNVYPNEIEDVVMAHPKVANCAAIGVPDERSGEAVKLFVVARDP-GLSVEELKAYCKE  528 (562)
T ss_pred             CCCCeEEEecccCCeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCCC-CCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988788889898887643 4567788888765

>PRK07656 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=7.4e-32  Score=227.17  Aligned_cols=195  Identities=43%  Similarity=0.686  Sum_probs=176.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC-c----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI-K----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~-~----------   70 (204)
                      +++.++++++|.+.++|++++.+.+......       ..++++|.+++||+++++++.+++.+.++. .          
T Consensus       247 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~  319 (513)
T PRK07656        247 VFRLIETERITVLPGPPTMYNSLLQHPDRSA-------EDLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEA  319 (513)
T ss_pred             HHHHHHHhCCeEEechHHHHHHHHcCCCcCC-------CCccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccC
Confidence            6788999999999999999999998766554       578899999999999999999999988776 2          


Q ss_pred             -------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccce
Q psy13807         71 -------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDF  122 (204)
Q Consensus        71 -------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~  122 (204)
                                               ++.++++|+++++++.|+.|||+++++.++.||++++..+..   .++||+|||+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~tGDl  399 (513)
T PRK07656        320 SGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEVPVGEVGELLVRGPNVMKGYYDDPEATAAAIDADGWLHTGDL  399 (513)
T ss_pred             CCceeecCccccccccCCCccccCCCcEEEEECCCCCCCCCCCceEEEEEcchhhhhhcCCHHHHhhhhccCCceeccce
Confidence                                     567788999999999999999999999999999998877665   4899999999


Q ss_pred             EEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHh
Q psy13807        123 FILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK  202 (204)
Q Consensus       123 ~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  202 (204)
                      ++++++|.++++||.||+++++|.+++|.+||+.+..+++|.+++|++.+++..++.+.++|+..++...+.++++++++
T Consensus       400 ~~~~~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~i~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~  479 (513)
T PRK07656        400 GRLDEEGYLYIVDRKKDMFIVGGFNVYPAEVEEVLYEHPAVAEAAVIGVPDERLGEVGKAYVVLKPGAELTEEELIAYCR  479 (513)
T ss_pred             EEEcCCeeEEEEecccceEEeCCEEeCHHHHHHHHHhCCCeeEEEEEecCCcccCceEEEEEEECCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888888999999998766788888988876


Q ss_pred             c
Q psy13807        203 G  203 (204)
Q Consensus       203 ~  203 (204)
                      +
T Consensus       480 ~  480 (513)
T PRK07656        480 E  480 (513)
T ss_pred             h
Confidence            5

>PRK12583 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=1.3e-31  Score=228.02  Aligned_cols=195  Identities=44%  Similarity=0.826  Sum_probs=174.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|+++..++.......       .+++++|.+++||+++++++.+++.+.++..           
T Consensus       283 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~-------~~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~  355 (558)
T PRK12583        283 TLQAVEEERCTALYGVPTMFIAELDHPQRGN-------FDLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTET  355 (558)
T ss_pred             HHHHHHHcCCeEEeccHHHHHHHHccccccC-------CCchhheEEEecCCCCCHHHHHHHHHHcCCcceecccccccc
Confidence            5788999999999999999988877654433       5678999999999999999999998876532           


Q ss_pred             -------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccce
Q psy13807         71 -------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDF  122 (204)
Q Consensus        71 -------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~  122 (204)
                                               ++.++++|+++.+++.|+.|||+++|+.++.||++++..+..   .++||+|||+
T Consensus       356 ~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGDl  435 (558)
T PRK12583        356 SPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATVPRGEIGELCTRGYSVMKGYWNNPEATAESIDEDGWMHTGDL  435 (558)
T ss_pred             ccceeccCcccccccccCCCCccCCCCeEEEECCCCCCCCCCCeeEEEEEeCccchhhcCChHHHHhhcCCCCCeeccce
Confidence                                     456788999999999999999999999999999999887755   6789999999


Q ss_pred             EEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHh
Q psy13807        123 FILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK  202 (204)
Q Consensus       123 ~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  202 (204)
                      ++++++|++++.||.+|+++++|.+|+|.+||+++..+++|.+++|++.++...+..+++++++.++...+..+++++|+
T Consensus       436 ~~~~~dg~l~i~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~  515 (558)
T PRK12583        436 ATMDEQGYVRIVGRSKDMIIRGGENIYPREIEEFLFTHPAVADVQVFGVPDEKYGEEIVAWVRLHPGHAASEEELREFCK  515 (558)
T ss_pred             EEECCCccEEEEecccceeEECCEEeCHHHHHHHHHhCCCeeEEEEEeeecCCCCcEEEEEEEECCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999887788999999998776677888888876


Q ss_pred             c
Q psy13807        203 G  203 (204)
Q Consensus       203 ~  203 (204)
                      +
T Consensus       516 ~  516 (558)
T PRK12583        516 A  516 (558)
T ss_pred             h
Confidence            5

>PRK08315 AMP-binding domain protein; Validated

Probab=100.00  E-value=1.6e-31  Score=227.55  Aligned_cols=195  Identities=46%  Similarity=0.855  Sum_probs=173.6

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.++++|+++..++.......       ..++++|.++++|+++++++.+++.+.++..           
T Consensus       281 ~~~~l~~~~~t~~~~~P~~~~~~~~~~~~~~-------~~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~  353 (559)
T PRK08315        281 TLAAVEEERCTALYGVPTMFIAELDHPDFAR-------FDLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTET  353 (559)
T ss_pred             HHHHHHHcCCeEEecchHHHHHHHhCcccCC-------CCchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEccccc
Confidence            6789999999999999999998887655444       5688999999999999999999988776532           


Q ss_pred             -------------------------ceEEEEECCC-CCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccc
Q psy13807         71 -------------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGD  121 (204)
Q Consensus        71 -------------------------~~~v~i~d~~-g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD  121 (204)
                                               ++.++++|++ |++++.|+.|||++++++++.||+++++.+..   .++||+|||
T Consensus       354 ~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~gy~~~~~~~~~~~~~~~~~~TGD  433 (559)
T PRK08315        354 SPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGETVPRGEQGELCTRGYSVMKGYWNDPEKTAEAIDADGWMHTGD  433 (559)
T ss_pred             ccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCcCCCCCceEEEEECchhhhhhcCChhHHhhcCCCCCCEEccc
Confidence                                     5677889988 99999999999999999999999999877655   578999999


Q ss_pred             eEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy13807        122 FFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYC  201 (204)
Q Consensus       122 ~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  201 (204)
                      +++++++|.++++||.||++|++|.++++.+||+++..+++|.+++|++.+++..++.++++|++.++...+..++++++
T Consensus       434 ~~~~~~dg~~~~~GR~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l  513 (559)
T PRK08315        434 LAVMDEEGYVNIVGRIKDMIIRGGENIYPREIEEFLYTHPKIQDVQVVGVPDEKYGEEVCAWIILRPGATLTEEDVRDFC  513 (559)
T ss_pred             eEEEcCCceEEEEeeccceEEECCEEEcHHHHHHHHHhCCCceEEEEEecCCCCCCeEEEEEEEeCCCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888777889999998877667788888888


Q ss_pred             hc
Q psy13807        202 KG  203 (204)
Q Consensus       202 ~~  203 (204)
                      ++
T Consensus       514 ~~  515 (559)
T PRK08315        514 RG  515 (559)
T ss_pred             Hh
Confidence            75

>PLN02330 4-coumarate--CoA ligase-like 1

Probab=100.00  E-value=9.7e-32  Score=228.60  Aligned_cols=195  Identities=30%  Similarity=0.523  Sum_probs=170.7

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCC--CceEEEEeCCCCCHHHHHHHHHHh-CCc--------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELS--SPVIALTAGAPCSPTLFNKIRDTF-GIK--------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~--~l~~~~~~G~~~~~~~~~~~~~~~-g~~--------   70 (204)
                      +++.++++++|.+.++|+++..+++......       ..+.  ++|.+++||+++++++.+++.+.| +.+        
T Consensus       267 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-------~~~~~~~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~t  339 (546)
T PLN02330        267 FLNALITQEVSFAPIVPPIILNLVKNPIVEE-------FDLSKLKLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLT  339 (546)
T ss_pred             HHHHHHHcCCeeeecCCHHHHHHHhCccccc-------cccchheeeeEEEcCCcCCHHHHHHHHHHcCCCeEEeccccc
Confidence            6789999999999999999999987644332       2333  578999999999999999999877 322        


Q ss_pred             -----------------------------ceEEEEECC-CCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCce
Q psy13807         71 -----------------------------HLIVKVVDK-KGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWF  117 (204)
Q Consensus        71 -----------------------------~~~v~i~d~-~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~  117 (204)
                                                   ++.++++|+ +++++|.|+.|||+++|++++.||+++++.+..   .++||
T Consensus       340 E~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~p~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~  419 (546)
T PLN02330        340 EHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSLPKNTPGELCVRSQCVMQGYYNNKEETDRTIDEDGWL  419 (546)
T ss_pred             ccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccCCCCCceEEEEecchhhhhhccCccchhhhccCCCce
Confidence                                         345778884 588999999999999999999999999888766   57999


Q ss_pred             eccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHH
Q psy13807        118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDI  197 (204)
Q Consensus       118 ~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l  197 (204)
                      +|||++++++||+++++||.+|+++++|.+|+|.+||+++.++++|.+++|++++++..++.++++|++.++...+.+++
T Consensus       420 ~TGD~~~~~~dG~l~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l  499 (546)
T PLN02330        420 HTGDIGYIDDDGDIFIVDRIKELIKYKGFQVAPAELEAILLTHPSVEDAAVVPLPDEEAGEIPAACVVINPKAKESEEDI  499 (546)
T ss_pred             ecccEEEEeCCCcEEEEechHHhhhcCCEEECHHHHHHHHHhCCchheEEEEeccccccCceeEEEEEECCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999998888889999999987766777888


Q ss_pred             HHHHhc
Q psy13807        198 KTYCKG  203 (204)
Q Consensus       198 ~~~l~~  203 (204)
                      ++++++
T Consensus       500 ~~~~~~  505 (546)
T PLN02330        500 LNFVAA  505 (546)
T ss_pred             HHHHHH
Confidence            888775

>PRK08314 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=1.5e-31  Score=227.27  Aligned_cols=196  Identities=29%  Similarity=0.459  Sum_probs=170.8

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      ++++++++++|++.++|++++.++.......       ..++++|.+++||+++++++.+++.+.++..           
T Consensus       271 ~~~~i~~~~~t~~~~~p~~~~~ll~~~~~~~-------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  343 (546)
T PRK08314        271 AARLIERYRVTHWTNIPTMVVDFLASPGLAE-------RDLSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETM  343 (546)
T ss_pred             HHHHHHHhcCceecccHHHHHHHHhCCCccc-------cCchhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccc
Confidence            5788999999999999999998887644333       5678999999999999999999998876643           


Q ss_pred             ---------------------ceEEEEECC-CCCcCCCCCeeEEEEEeCcccccccCCcccccC------CCCceeccce
Q psy13807         71 ---------------------HLIVKVVDK-KGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE------NDEWFPSGDF  122 (204)
Q Consensus        71 ---------------------~~~v~i~d~-~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~------~~~~~~TGD~  122 (204)
                                           ++.++++|+ ++.+++.|..|||+++|++++.||+++++.+..      ..+||+|||+
T Consensus       344 ~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~f~~~~~~~~~~TGDl  423 (546)
T PRK08314        344 AQTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEELPPGEVGEIVVHGPQVFKGYWNRPEATAEAFIEIDGKRFFRTGDL  423 (546)
T ss_pred             cceecCCCcCCCCCccCcccCCeEEEEEeCCCCcCCCCCCceEEEEECCchhccccCChhHhhhhhhhcCCCceEecCCE
Confidence                                 557788885 589999999999999999999999998876654      2459999999


Q ss_pred             EEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCC--CCCHHHHHHH
Q psy13807        123 FILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA--SLTQDDIKTY  200 (204)
Q Consensus       123 ~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~--~~~~~~l~~~  200 (204)
                      ++++++|++++.||.||+++++|.+|+|.+||+++.++|+|.+++|++.++...++.+++++++.++.  ..+.++++++
T Consensus       424 ~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~i~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~~~l~~~  503 (546)
T PRK08314        424 GRMDEEGYFFITDRLKRMINASGFKVWPAEVENLLYKHPAIQEACVIATPDPRRGETVKAVVVLRPEARGKTTEEEIIAW  503 (546)
T ss_pred             EEEcCCCcEEEEecchhhEEeCCEEECHHHHHHHHHhCcchheEEEEeCCCcccCceeEEEEEECCCCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999887888999999987653  3456788888


Q ss_pred             HhcC
Q psy13807        201 CKGK  204 (204)
Q Consensus       201 l~~~  204 (204)
                      |+++
T Consensus       504 ~~~~  507 (546)
T PRK08314        504 AREH  507 (546)
T ss_pred             HHHh
Confidence            8753

>PRK06188 acyl-CoA synthetase; Validated

Probab=100.00  E-value=2.5e-31  Score=224.92  Aligned_cols=195  Identities=35%  Similarity=0.590  Sum_probs=174.5

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|+++++|+++..+++......       ..++++|.+++||+++++++.+.+.+.++..           
T Consensus       247 ~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~-------~~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  319 (524)
T PRK06188        247 VLRAIEEQRITATFLVPTMIYALLDHPDLRT-------RDLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAP  319 (524)
T ss_pred             HHHHHHHhCCEEEEehHHHHHHHHhCcCccC-------CCCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccC
Confidence            6789999999999999999999988765544       5788999999999999999888877665432           


Q ss_pred             ---------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccc
Q psy13807         71 ---------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGD  121 (204)
Q Consensus        71 ---------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD  121 (204)
                                                 ++.++++|+++++++.|+.|+|+++++.++.||++++..+..  .++||+|||
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD  399 (524)
T PRK06188        320 MVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGREVAQGEVGEICVRGPLVMDGYWNRPEETAEAFRDGWLHTGD  399 (524)
T ss_pred             CceeecCchhccccccccCCccccccCCcEEEEEcCCCCCCCCCCeeEEEEECcchhhhhcCChHHhhhhhcCCceeecc
Confidence                                       456888999999999999999999999999999999887765  678999999


Q ss_pred             eEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy13807        122 FFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYC  201 (204)
Q Consensus       122 ~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  201 (204)
                      +++++++|++++.||.+|+++++|.+++|.+||++|.++++|.+++|++.+++..++.+++++++.++...+.++++++|
T Consensus       400 l~~~~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~  479 (524)
T PRK06188        400 VAREDEDGFYYIVDRKKDMIVTGGFNVFPREVEDVLAEHPAVAQVAVIGVPDEKWGEAVTAVVVLRPGAAVDAAELQAHV  479 (524)
T ss_pred             eEEEcCCccEEEEeccccceecCCEEECHHHHHHHHHhCCCeeEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888778899999999877677788888888


Q ss_pred             hc
Q psy13807        202 KG  203 (204)
Q Consensus       202 ~~  203 (204)
                      ++
T Consensus       480 ~~  481 (524)
T PRK06188        480 KE  481 (524)
T ss_pred             HH
Confidence            65

>PLN02860 o-succinylbenzoate-CoA ligase

Probab=100.00  E-value=2.1e-31  Score=227.31  Aligned_cols=197  Identities=32%  Similarity=0.526  Sum_probs=161.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC-Cc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG-IK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g-~~----------   70 (204)
                      +++.++++++|++.++|+++..|++......     ....++++|.+++||+++++.+.+++.+.|+ ..          
T Consensus       252 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~-----~~~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~  326 (563)
T PLN02860        252 ALQAIKQHNVTSMITVPAMMADLISLTRKSM-----TWKVFPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEA  326 (563)
T ss_pred             HHHHHHHhCCeeEEeChHHHHHHHHhhhhhh-----ccccccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCcccc
Confidence            6789999999999999999999987653221     0145789999999999999999999998873 22          


Q ss_pred             ceEE---EEEC---------------------------CCCCcCC----------CCCeeEEEEEeCcccccccCCcccc
Q psy13807         71 HLIV---KVVD---------------------------KKGNIVP----------MGMCGEVCYRGYNVMLGYYGEENKI  110 (204)
Q Consensus        71 ~~~v---~i~d---------------------------~~g~~~~----------~~~~Gel~v~~~~~~~~y~~~~~~~  110 (204)
                      +..+   .+.+                           .-|.++|          .|+.|||+++|++++.|||++++.+
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~~~~~g~~Gel~v~g~~~~~GY~~~~~~t  406 (563)
T PLN02860        327 CSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCVGKPAPHVELKIGLDESSRVGRILTRGPHVMLGYWGQNSET  406 (563)
T ss_pred             CcccccccccccccccchhhhhhhcccccccccccCCcccCCccCCcEEEEecCCCCceeEEEEecCcccccccCCcccc
Confidence            1000   0000                           0133332          3578999999999999999999887


Q ss_pred             cC---CCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeC
Q psy13807        111 LE---NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK  187 (204)
Q Consensus       111 ~~---~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~  187 (204)
                      ..   .+|||+|||++++|++|++++.||.+|+||++|++|+|.+||+++..+|+|.+++|++.+++..++.++++|++.
T Consensus       407 ~~~~~~~g~~~TGDl~~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~v~~~~~~~~~~~~~a~v~~~  486 (563)
T PLN02860        407 ASVLSNDGWLDTGDIGWIDKAGNLWLIGRSNDRIKTGGENVYPEEVEAVLSQHPGVASVVVVGVPDSRLTEMVVACVRLR  486 (563)
T ss_pred             chhccCCCeEEccceEEEcCCCCEEEeecccceeEECCEEccHHHHHHHHHhCCCcceeEEEEEecCcCCceEEEEEEEC
Confidence            66   589999999999999999999999999999999999999999999999999999999999988889999999987


Q ss_pred             CCC--------------CCCHHHHHHHHhc
Q psy13807        188 PGA--------------SLTQDDIKTYCKG  203 (204)
Q Consensus       188 ~~~--------------~~~~~~l~~~l~~  203 (204)
                      ++.              ..+.+.+++++++
T Consensus       487 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  516 (563)
T PLN02860        487 DGWIWSDNEKENAKKNLTLSSETLRHHCRE  516 (563)
T ss_pred             CccccccccchhhcccccccHHHHHHHHhh
Confidence            652              3456778887764

>PRK05605 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.1e-31  Score=227.69  Aligned_cols=195  Identities=32%  Similarity=0.550  Sum_probs=174.4

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|++++.|.+......       ..++++|.+++||+++++++.+.+.+.++..           
T Consensus       302 ~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~  374 (573)
T PRK05605        302 ILDAMKKHPPTWLPGVPPLYEKIAEAAEERG-------VDLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETS  374 (573)
T ss_pred             HHHHHHHhCCEEEEchHHHHHHHHhCccccC-------CCchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhc
Confidence            5788999999999999999999998765544       5688999999999999999999888765432           


Q ss_pred             ----------------------ceEEEEECCC--CCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEE
Q psy13807         71 ----------------------HLIVKVVDKK--GNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFI  124 (204)
Q Consensus        71 ----------------------~~~v~i~d~~--g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~  124 (204)
                                            ++.++++|++  +.+++.|..|||+++++.++.||+++++.+..  .++||+|||+++
T Consensus       375 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGD~~~  454 (573)
T PRK05605        375 PIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMPDGEEGELLVRGPQVFKGYWNRPEETAKSFLDGWFRTGDVVV  454 (573)
T ss_pred             hhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCccCCCCCeeEEEEecCchhhhhcCChhHhhhcccCCCcccCCEEE
Confidence                                  5678888876  58899999999999999999999999887765  567999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      ++++|++++.||.||++|++|.+|+|.+||+++..++.|.+++|++.++...++.+++++++.++...+.++|++++++
T Consensus       455 ~~~~g~l~i~gR~dd~i~~~G~~v~p~eIE~~l~~~~~i~~~~v~~~~~~~~~~~~~~~vv~~~~~~~~~~~l~~~~~~  533 (573)
T PRK05605        455 MEEDGFIRIVDRIKELIITGGFNVYPAEVEEVLREHPGVEDAAVVGLPREDGSEEVVAAVVLEPGAALDPEGLRAYCRE  533 (573)
T ss_pred             EcCCCcEEEEeccccceeeCCEEECHHHHHHHHHhCcccceEEEEeeecccCCeEEEEEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998888889999999988777788888888765

>PRK10946 entE enterobactin synthase subunit E; Provisional

Probab=100.00  E-value=3.2e-31  Score=225.02  Aligned_cols=195  Identities=30%  Similarity=0.407  Sum_probs=171.0

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|++.++|++++.|++......     ....+++++.+++||+++++.+.+++.+.+|+.           
T Consensus       264 ~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~-----~~~~~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~  338 (536)
T PRK10946        264 CFPLIEKHQVNVTALVPPAVSLWLQAIAEGG-----SRAQLASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGL  338 (536)
T ss_pred             HHHHHHHhCCcEEEeChHHHHHHHhhhcccC-----ccccccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccc
Confidence            4678999999999999999999987632211     014578999999999999999999998776543           


Q ss_pred             -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEE
Q psy13807         71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFI  124 (204)
Q Consensus        71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~  124 (204)
                                             ++.++++|++|++++.|+.|+|+++|+.++.||+++++.+..   .++||+|||+++
T Consensus       339 ~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~GY~~~~~~t~~~~~~d~~~~TGDl~~  418 (536)
T PRK10946        339 VNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLVS  418 (536)
T ss_pred             eeeecCCCccccccccCCcccCCCceEEEECCCCCCCCCCCccEEEEecCccchhhcCCcccchhhcccCCceecCceEE
Confidence                                   356778898999999999999999999999999999887765   579999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      +|++|++++.||.+|+++++|.+++|.+||+.|.++|+|.+++|++.+++..++.+++++++.++  .+.+++++++++
T Consensus       419 ~d~~G~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~a~vv~~~~--~~~~~l~~~~~~  495 (536)
T PRK10946        419 IDPDGYITVVGREKDQINRGGEKIAAEEIENLLLRHPAVIHAALVSMEDELMGEKSCAFLVVKEP--LKAVQLRRFLRE  495 (536)
T ss_pred             ECCCCcEEEeccccceeecCCEEEcHHHHHHHHHhCCCcceEEEEcCCCcccCceEEEEEEeCCC--CCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999988888899999998754  777888888864

>PRK06710 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=2.1e-31  Score=227.20  Aligned_cols=195  Identities=30%  Similarity=0.506  Sum_probs=172.7

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.|+++++|.+.++|+++..+++......       ..++++|.+++||+++++++.+++.+.++..           
T Consensus       289 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  361 (563)
T PRK06710        289 VFEAIKKHKVTLFPGAPTIYIALLNSPLLKE-------YDISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESS  361 (563)
T ss_pred             HHHHHHHcCCeEEeccHHHHHHHHcCCcccc-------CChhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCc
Confidence            5788999999999999999999887654333       4678999999999999999999998876533           


Q ss_pred             ----------------------ceEEEEEC-CCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEEE
Q psy13807         71 ----------------------HLIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFIL  125 (204)
Q Consensus        71 ----------------------~~~v~i~d-~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~  125 (204)
                                            ++.++++| +++.+++.|+.|+|++++++++.||+++++.+..  .++||+|||++++
T Consensus       362 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~g~~~TGD~~~~  441 (563)
T PRK06710        362 PVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPGEIGEIVVKGPQIMKGYWNKPEETAAVLQDGWLHTGDVGYM  441 (563)
T ss_pred             cccccCcccccccCCccCCCCCCCeEEEEECCCCccCCCCCceEEEEecCccchhhhCChHHHhhhcccCcccccceEEE
Confidence                                  34566777 4588999999999999999999999999887766  6789999999999


Q ss_pred             ecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       126 ~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      +++|.++++||.||+|+++|.+|+|.+||+++.++|+|.+++|++.+++..++.++++++..++...+.+++++++++
T Consensus       442 ~~~g~~~~~GR~dd~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~  519 (563)
T PRK06710        442 DEDGFFYVKDRKKDMIVASGFNVYPREVEEVLYEHEKVQEVVTIGVPDPYRGETVKAFVVLKEGTECSEEELNQFARK  519 (563)
T ss_pred             cCCCcEEEeeccccEEEECCEEECHHHHHHHHHhCcceeeEEEEccccCCcCceeEEEEEECCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998888889999999988777788888888765

>PRK07008 long-chain-fatty-acid--CoA ligase; Validated

Probab=100.00  E-value=4.6e-31  Score=224.16  Aligned_cols=195  Identities=27%  Similarity=0.518  Sum_probs=170.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      ++++++++++|.+.++|+++..+++......       ..+++++.++++|+++++.+.+++.+.+|.+           
T Consensus       259 ~~~~l~~~~vt~~~~~P~~~~~l~~~~~~~~-------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~  331 (539)
T PRK07008        259 LYELIEAERVTFSAGVPTVWLGLLNHMREAG-------LRFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMS  331 (539)
T ss_pred             HHHHHHHcCCEEEEechHHHHHHHhcccccC-------CCcccceEEEEcCCCCCHHHHHHHHHHhCCceeccccccccc
Confidence            6789999999999999999999988765544       5788999999999999999999997765433           


Q ss_pred             --------------------------------ceEEEEECCCCCcCCCC--CeeEEEEEeCcccccccCCcccccCCCCc
Q psy13807         71 --------------------------------HLIVKVVDKKGNIVPMG--MCGEVCYRGYNVMLGYYGEENKILENDEW  116 (204)
Q Consensus        71 --------------------------------~~~v~i~d~~g~~~~~~--~~Gel~v~~~~~~~~y~~~~~~~~~~~~~  116 (204)
                                                      ++.++++|+++.+++.+  ..|||+++|+.++.||++++... ..++|
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~~-~~~g~  410 (539)
T PRK07008        332 PLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIVGDDGRELPWDGKAFGDLQVRGPWVIDRYFRGDASP-LVDGW  410 (539)
T ss_pred             ccceecccccccccCCchhhhhhcccCCccccceEEEEECCCCCccCCCCCcceEEEEeCCccchhhcCChhhh-hcCCC
Confidence                                            34677888888888754  57999999999999999987322 24789


Q ss_pred             eeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHH
Q psy13807        117 FPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDD  196 (204)
Q Consensus       117 ~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~  196 (204)
                      |+|||++++++||++++.||.+|+||++|.+++|.+||+.+..+|.|.++++++.++...++.++++|+..++...+.++
T Consensus       411 ~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  490 (539)
T PRK07008        411 FPTGDVATIDADGFMQITDRSKDVIKSGGEWISSIDIENVAVAHPAVAEAACIACAHPKWDERPLLVVVKRPGAEVTREE  490 (539)
T ss_pred             cccCceEEEcCCCcEEEeecccCEEEeCCeEEcHHHHHHHHHhCCceeEEEEEecCCchhccceEEEEEeCCCCccCHHH
Confidence            99999999999999999999999999999999999999999999999999999999887788899999988776778888


Q ss_pred             HHHHHhcC
Q psy13807        197 IKTYCKGK  204 (204)
Q Consensus       197 l~~~l~~~  204 (204)
                      ++++++++
T Consensus       491 l~~~~~~~  498 (539)
T PRK07008        491 LLAFYEGK  498 (539)
T ss_pred             HHHHHHhh
Confidence            88888753

>PRK13390 acyl-CoA synthetase; Provisional

Probab=100.00  E-value=3.8e-31  Score=222.70  Aligned_cols=197  Identities=29%  Similarity=0.443  Sum_probs=168.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.|+++++|.+.++|+++..|++.......     ...++++|.++++|+++++++.+.+.+.++.+           
T Consensus       234 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----~~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  308 (501)
T PRK13390        234 TLGHVERYRITVTQMVPTMFVRLLKLDADVRT-----RYDVSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAH  308 (501)
T ss_pred             HHHHHHHcCCeEEEecHHHHHHHHhccchhcc-----cCChhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccC
Confidence            67899999999999999999988865432110     04577999999999999999999988876533           


Q ss_pred             ---------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC-----CCCceeccceEE
Q psy13807         71 ---------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE-----NDEWFPSGDFFI  124 (204)
Q Consensus        71 ---------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~-----~~~~~~TGD~~~  124 (204)
                                           ...++++|++|++++.|+.|||++++++++.||+++++.+..     .++|++|||+++
T Consensus       309 ~~~~~~~~~~~~~~~~~G~~~~g~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~t~~~~~~~~~~w~~tGDl~~  388 (501)
T PRK13390        309 GMTFIDSPDWLAHPGSVGRSVLGDLHICDDDGNELPAGRIGTVYFERDRLPFRYLNDPEKTAAAQHPAHPFWTTVGDLGS  388 (501)
T ss_pred             ceEEecchhhccCCCCcCCcccceEEEECCCCCCCCCCCceEEEEecCCccccccCChhhhHHhhccCCCceEEcCceEE
Confidence                                 114778898999999999999999999999999999987765     368999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC---HHHHHHHH
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT---QDDIKTYC  201 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~---~~~l~~~l  201 (204)
                      ++++|++++.||.||+||++|.+|+|.+||+++..+|+|.+++|++.+++..++.+++++++.++.+.+   .+++++++
T Consensus       389 ~~~dg~l~~~gR~~~~i~~~G~~v~p~eIE~~l~~~~~v~~~~v~~~~~~~~~e~~~~~v~~~~~~~~~~~~~~~l~~~~  468 (501)
T PRK13390        389 VDEDGYLYLADRKSFMIISGGVNIYPQETENALTMHPAVHDVAVIGVPDPEMGEQVKAVIQLVEGIRGSDELARELIDYT  468 (501)
T ss_pred             ECCCCeEEEeeccccceeECCeeeCHHHHHHHHHhCCCeeEEEEEeccCcccCceeEEEEEecCCCCcchhhHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988888999999987654433   34666666


Q ss_pred             hc
Q psy13807        202 KG  203 (204)
Q Consensus       202 ~~  203 (204)
                      ++
T Consensus       469 ~~  470 (501)
T PRK13390        469 RS  470 (501)
T ss_pred             HH
Confidence            54

>PRK08316 acyl-CoA synthetase; Validated

Probab=100.00  E-value=4.6e-31  Score=222.85  Aligned_cols=195  Identities=35%  Similarity=0.584  Sum_probs=175.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC-Cc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG-IK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g-~~----------   70 (204)
                      +++.++++++|.+.++|+++..+.+......       ..+++++.+++||+++++++.+.+.+.++ ..          
T Consensus       252 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~  324 (523)
T PRK08316        252 ILRTIEAERITSFFAPPTVWISLLRHPDFDT-------RDLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEI  324 (523)
T ss_pred             HHHHHHHhCCeEEEeCHHHHHHHHcCccccc-------CCcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeeccccc
Confidence            6789999999999999999999988765544       57889999999999999999999988762 11          


Q ss_pred             ------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEE
Q psy13807         71 ------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFI  124 (204)
Q Consensus        71 ------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~  124 (204)
                                              ++.+++.|++|++++.|+.|||+++++.++.+|+++++.+..  .++||+|||+++
T Consensus       325 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gei~v~~~~~~~~y~~~~~~~~~~~~~~~~~TGDl~~  404 (523)
T PRK08316        325 APLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVAPGEVGEIVHRSPQLMLGYWDDPEKTAEAFRGGWFHSGDLGV  404 (523)
T ss_pred             CccccccCccccccccCCcccCCCCcEEEEEcCCCCCCCCCCcceEEEECCchhhhhcCCHHHHHHHhhCCCeeccceEE
Confidence                                    567888999999999999999999999999999999887765  689999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      +++||.+++.||.||++|++|.+++|.+||+.+.++++|.+++|++.+++..++.+++++++.++...+.+.+.+.+++
T Consensus       405 ~~~~g~l~i~gR~~~~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~~  483 (523)
T PRK08316        405 MDEEGYITVVDRKKDMIKTGGENVASREVEEALYTHPAVAEVAVIGLPDPKWIEAVTAVVVPKAGATVTEDELIAHCRA  483 (523)
T ss_pred             EcCCceEEEecccccEEEeCCeEECHHHHHHHHHhCCChheEeEecccCcccCCeEEEEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888889999999987766777788887764

>PLN03052 acetate--CoA ligase; Provisional

Probab=100.00  E-value=6.3e-31  Score=229.75  Aligned_cols=194  Identities=22%  Similarity=0.243  Sum_probs=159.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC---------c--
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI---------K--   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~---------~--   70 (204)
                      ++++++++++|++.++|++++.|.+......       .++++||.++++|++++++...++.+.++.         +  
T Consensus       437 ~~~~i~~~~vT~l~~~Pt~l~~l~~~~~~~~-------~dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~  509 (728)
T PLN03052        437 FAKFVQDAKVTMLGTVPSIVKTWKNTNCMAG-------LDWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTEL  509 (728)
T ss_pred             HHHHHHHHCCCEEEECHHHHHHHHhcCCccc-------CChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhh
Confidence            6889999999999999999999887653333       678999999999999999998888765431         1  


Q ss_pred             -----------------------ceEEEEECCCCCcCCCCC--eeEEEEEeCc--ccccccCCcccccC--------CCC
Q psy13807         71 -----------------------HLIVKVVDKKGNIVPMGM--CGEVCYRGYN--VMLGYYGEENKILE--------NDE  115 (204)
Q Consensus        71 -----------------------~~~v~i~d~~g~~~~~~~--~Gel~v~~~~--~~~~y~~~~~~~~~--------~~~  115 (204)
                                             ++.++++|++|++++.|+  .|||++.++.  ...+|+++......        .+.
T Consensus       510 ~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~g~~~~GEL~v~~~~~~~~~~~~~~~~~~~yf~~~p~~~g~~  589 (728)
T PLN03052        510 GGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPDDAPCTGELALFPLMFGASSTLLNADHYKVYFKGMPVFNGKI  589 (728)
T ss_pred             CcccccCCCCCCCCCCccccCCCCceEEEECCCCCCCCCCCCceEEEEEeCCCCCCCccccCchhhhhhhhcCCCCCCCE
Confidence                                   678889999999999985  5999998652  33456654321111        223


Q ss_pred             ceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHh-cCCCcceEEEEeeeCCCCC-ceEEEEEEeC--CCCC
Q psy13807        116 WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQ-THPDVVEAQVYGVPDERLG-EVVVANIELK--PGAS  191 (204)
Q Consensus       116 ~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~-~~~~V~~~~v~~~~~~~~~-~~~~a~v~~~--~~~~  191 (204)
                      ||+|||++++|++|+++|+||+||+||++|+||+|.|||+++. .+|+|.+++|++++++..| +.+++||++.  ++..
T Consensus       590 ~~~tGDl~~~d~dG~l~i~GR~Dd~I~~~G~rI~~~EIE~~l~~~~p~V~eaaVvg~~d~~~g~e~~~afVvl~~~~g~~  669 (728)
T PLN03052        590 LRRHGDIFERTSGGYYRAHGRADDTMNLGGIKVSSVEIERVCNAADESVLETAAIGVPPPGGGPEQLVIAAVLKDPPGSN  669 (728)
T ss_pred             EEecCceEEECCCCeEEEEecCCCEEeeCCEEeCHHHHHHHHHhcCCCcceEEEEeeecCCCCcEEEEEEEEEecCCCCC
Confidence            8999999999999999999999999999999999999999985 7899999999999988665 7899999997  5655


Q ss_pred             CCHHHHHHHHh
Q psy13807        192 LTQDDIKTYCK  202 (204)
Q Consensus       192 ~~~~~l~~~l~  202 (204)
                      .+.++|++.++
T Consensus       670 ~~~~~L~~~i~  680 (728)
T PLN03052        670 PDLNELKKIFN  680 (728)
T ss_pred             CCHHHHHHHHH
Confidence            66667776654

>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional

Probab=99.98  E-value=5.2e-31  Score=224.68  Aligned_cols=194  Identities=29%  Similarity=0.517  Sum_probs=170.8

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|+++..+.+......       .+++++|.+++||+++++.+.+.|.+.+|..           
T Consensus       295 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------~~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  367 (560)
T PRK08751        295 FVKELKKTRFTAFTGVNTLFNGLLNTPGFDQ-------IDFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETS  367 (560)
T ss_pred             HHHHHHhcceeEecChHHHHHHHHcCcCcCC-------cchhhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCC
Confidence            6788999999999999999999988654444       5678999999999999999999998876542           


Q ss_pred             ----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEEE
Q psy13807         71 ----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFIL  125 (204)
Q Consensus        71 ----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~~  125 (204)
                                            ++.++++|++|++++.|+.|||++++++++.||+++++.+..   .+|||+|||++++
T Consensus       368 ~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~g~~~TGD~~~~  447 (560)
T PRK08751        368 PAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIGEIGELCIKGPQVMKGYWKRPEETAKVMDADGWLHTGDIARM  447 (560)
T ss_pred             CceecccccccccCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecCccchhhcCChhhhhhccccCCCccccceEEE
Confidence                                  467788999999999999999999999999999999987765   5789999999999


Q ss_pred             ecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       126 ~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      +++|++++.||.+|+++++|.+++|.+||+.+..+++|.+++|++.++...++.+.++++.. +...+.+++++.+++
T Consensus       448 ~~~g~l~i~GR~~d~i~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~ge~~~~~v~~~-~~~~~~~~l~~~~~~  524 (560)
T PRK08751        448 DEQGFVYIVDRKKDMILVSGFNVYPNEIEDVIAMMPGVLEVAAVGVPDEKSGEIVKVVIVKK-DPALTAEDVKAHARA  524 (560)
T ss_pred             cCCceEEEEeechhheeECCEEEcHHHHHHHHHhCcCeeeeEEEecCCCCCCceEEEEEEcC-CCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999887777787777754 445677788877765

>PRK09088 acyl-CoA synthetase; Validated

Probab=99.98  E-value=1.2e-30  Score=218.91  Aligned_cols=189  Identities=32%  Similarity=0.471  Sum_probs=163.9

Q ss_pred             HcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHH-------hCCc----------
Q psy13807          8 KEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDT-------FGIK----------   70 (204)
Q Consensus         8 ~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~-------~g~~----------   70 (204)
                      ++++|.++++|++++.+.+......       ..+++++.+++||+++++...+.+.+.       ||.+          
T Consensus       224 ~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~l~~~~~gG~~~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~  296 (488)
T PRK09088        224 ALGITHYFCVPQMAQAFRAQPGFDA-------AALRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTVFGMSV  296 (488)
T ss_pred             ccCCcEEeeHHHHHHHHHhCcCcCc-------cccccceEEEecCCCCCHHHHHHHHHhCCceeeeecccccccccccCC
Confidence            5899999999999998887654333       467899999999999998887776642       2221          


Q ss_pred             -----------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEEEecCCe
Q psy13807         71 -----------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGY  130 (204)
Q Consensus        71 -----------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~~~~~g~  130 (204)
                                       ++.++++|+++++++.|+.|||++++++++.||+++++.+..   .++||+|||+++++++|.
T Consensus       297 ~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~~~~g~  376 (488)
T PRK09088        297 DCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAGVPGELLLRGPNLSPGYWRRPQATARAFTGDGWFRTGDIARRDADGF  376 (488)
T ss_pred             CcccccccCCccccCCCCcEEEEECCCCCCCcCCCceEEEEECCccchhhcCChhhhhhhhcCCCCeeecceEEEcCCCc
Confidence                             567788998999999999999999999999999999887765   489999999999999999


Q ss_pred             EEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       131 ~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      +++.||.+|+|+++|.+++|.+||++|..+|+|.+++|++.+++..++..+++|++.++...+.+++.++|++
T Consensus       377 l~i~GR~~d~i~~~G~~i~~~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~  449 (488)
T PRK09088        377 FWVVDRKKDMFISGGENVYPAEIEAVLADHPGIRECAVVGMADAQWGEVGYLAIVPADGAPLDLERIRSHLST  449 (488)
T ss_pred             EEEeccccceEEeCCEEECHHHHHHHHHhCCCcceEEEEeCCCccCCceeEEEEEECCCCCCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999988777788889999887666677888888765

>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional

Probab=99.98  E-value=1.1e-30  Score=222.09  Aligned_cols=194  Identities=31%  Similarity=0.478  Sum_probs=170.4

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.|+++++|.++++|+++..+.+......       ...++++.++.+|  +++.+.+++.+.++.+           
T Consensus       260 ~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~-------~~~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~  330 (542)
T PRK06155        260 FWPAVRRHGATVTYLLGAMVSILLSQPARES-------DRAHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETN  330 (542)
T ss_pred             HHHHHHHhCCcEEEchHHHHHHHHcCcCccc-------cccCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccC
Confidence            6789999999999999999999887765444       4567888777555  6788888888876543           


Q ss_pred             --------------------ceEEEEECCCCCcCCCCCeeEEEEEeC---cccccccCCcccccC--CCCceeccceEEE
Q psy13807         71 --------------------HLIVKVVDKKGNIVPMGMCGEVCYRGY---NVMLGYYGEENKILE--NDEWFPSGDFFIL  125 (204)
Q Consensus        71 --------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~---~~~~~y~~~~~~~~~--~~~~~~TGD~~~~  125 (204)
                                          ++.++++|+++++++.|..|||+++++   +++.||+++++.+..  .++||+|||++++
T Consensus       331 ~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~Gei~v~~~~~~~~~~GY~~~~~~~~~~~~~~~~~TGD~~~~  410 (542)
T PRK06155        331 FVIAVTHGSQRPGSMGRLAPGFEARVVDEHDQELPDGEPGELLLRADEPFAFATGYFGMPEKTVEAWRNLWFHTGDRVVR  410 (542)
T ss_pred             ccccCCCCCCCCCCcCccCCCceEEEECCCCCCCCCCCceEEEEecCCccccchhhcCCHHHHHHhhcCCcEeccceEEE
Confidence                                678889999999999999999999998   689999998887665  6899999999999


Q ss_pred             ecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807        126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK  204 (204)
Q Consensus       126 ~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  204 (204)
                      ++||++++.||.+|+++++|.+++|.+||+++.++|+|.+++|++++++..++.+.+++++.++...+..+++++|+++
T Consensus       411 ~~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~~v~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~  489 (542)
T PRK06155        411 DADGWFRFVDRIKDAIRRRGENISSFEVEQVLLSHPAVAAAAVFPVPSELGEDEVMAAVVLRDGTALEPVALVRHCEPR  489 (542)
T ss_pred             cCCceEEEEecCCCEEEeCCEEECHHHHHHHHHhCCCeeEEEEEeecccccCceEEEEEEECCCCCCCHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999988778889999998877778888898888753

>PRK08276 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.98  E-value=1.1e-30  Score=219.82  Aligned_cols=197  Identities=31%  Similarity=0.495  Sum_probs=169.7

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|++++.+++.......     ..+++++|.++++|+++++++.+++.+.+|..           
T Consensus       226 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----~~~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~  300 (502)
T PRK08276        226 ALALIERYRVTHSQLVPTMFVRMLKLPEEVRA-----RYDVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGG  300 (502)
T ss_pred             HHHHHHHhCCeEEEehHHHHHHHHhCccccCC-----CCCcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhccccccc
Confidence            67899999999999999999999876543221     14678999999999999999999988865532           


Q ss_pred             ---------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEEEe
Q psy13807         71 ---------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILH  126 (204)
Q Consensus        71 ---------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~~~  126 (204)
                                           ++.++++|+++.+++.|+.|||+++++.++.+|+++++.+..   .++||+|||+++++
T Consensus       301 ~~~~~~~~~~~~~~~~~G~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~~~~~  380 (502)
T PRK08276        301 GVTVITSEDWLAHPGSVGKAVLGEVRILDEDGNELPPGEIGTVYFEMDGYPFEYHNDPEKTAAARNPHGWVTVGDVGYLD  380 (502)
T ss_pred             ceeEecCccccccCCCcceecccEEEEECCCCCCCcCCCceEEEEECCCccchhcCCHHHHHHHhcCCCceeecceEEEc
Confidence                                 256788888899999999999999999999999999887766   45999999999999


Q ss_pred             cCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH---HHHHHHHhc
Q psy13807        127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ---DDIKTYCKG  203 (204)
Q Consensus       127 ~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~---~~l~~~l~~  203 (204)
                      ++|.+++.||.||++|++|.++++.+||.++.++|+|.++++++.+++..++.++++|++.++...+.   +.+++.+++
T Consensus       381 ~~g~~~~~GR~~~~i~~~G~~v~~~~iE~~i~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~  460 (502)
T PRK08276        381 EDGYLYLTDRKSDMIISGGVNIYPQEIENLLVTHPKVADVAVFGVPDEEMGERVKAVVQPADGADAGDALAAELIAWLRG  460 (502)
T ss_pred             CCcCEEEeccCcceEEeCCEEeCHHHHHHHHHhCCCcceEEEEeCCCcccCceEEEEEEECCCCCCChhhHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999998888889999999987644443   356666654

>PRK13383 acyl-CoA synthetase; Provisional

Probab=99.98  E-value=1.5e-30  Score=219.83  Aligned_cols=197  Identities=26%  Similarity=0.433  Sum_probs=171.4

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|++++.+.........     ...++++|.+++||+++++++.++|.+.+|..           
T Consensus       256 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----~~~~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~  330 (516)
T PRK13383        256 ALAQASLHRADAFTAVPVVLARILELPPRVRA-----RNPLPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVG  330 (516)
T ss_pred             HHHHHHHhCCcEEEecHHHHHHHHhccccccc-----cCCCCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccc
Confidence            57889999999999999999998875432110     03568899999999999999999998877643           


Q ss_pred             ----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEecC
Q psy13807         71 ----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHEN  128 (204)
Q Consensus        71 ----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~~  128 (204)
                                            ++.++++|++|++++.|+.|||+++|+.++.+|++.+.... .+|||+|||++++|++
T Consensus       331 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~Y~~~~~~~~-~~g~~~TGDl~~~d~~  409 (516)
T PRK13383        331 IGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRVTGRIFVGGELAGTRYTDGGGKAV-VDGMTSTGDMGYLDNA  409 (516)
T ss_pred             cceeccccccccCCCcccCCCCCcEEEEECCCCCCCCCCCceEEEEecCcccccccCCchhhe-ecCceecceeEEEcCC
Confidence                                  46788999999999999999999999999999998764322 5799999999999999


Q ss_pred             CeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807        129 GYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK  204 (204)
Q Consensus       129 g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  204 (204)
                      |++++.||.+|+||++|.+|+|.+||++|.++|.|.++++++.++...++.+.++|++.++...+.++++++++++
T Consensus       410 G~l~i~GR~~~~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~v~~~~~~~~~~~~l~~~~~~~  485 (516)
T PRK13383        410 GRLFIVGREDDMIISGGENVYPRAVENALAAHPAVADNAVIGVPDERFGHRLAAFVVLHPGSGVDAAQLRDYLKDR  485 (516)
T ss_pred             ccEEEeccccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeccccccCceEEEEEEECCCCCCCHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999988888899999999877667778888887753

>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional

Probab=99.98  E-value=2.8e-30  Score=217.85  Aligned_cols=197  Identities=30%  Similarity=0.489  Sum_probs=171.8

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|++++.+++.......     ..++++++.+++||+++++++.+++.+.++..           
T Consensus       235 ~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~~-----~~~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  309 (509)
T PRK12406        235 LLQLIERHRITHMHMVPTMFIRLLKLPEEVRA-----KYDVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESG  309 (509)
T ss_pred             HHHHHHHcCCeEEEccHHHHHHHHhCchhhcc-----cCCCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccC
Confidence            67899999999999999999998875432110     14678999999999999999999998876532           


Q ss_pred             ----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccc-cccCCcccccC--CCCceeccceEEE
Q psy13807         71 ----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVML-GYYGEENKILE--NDEWFPSGDFFIL  125 (204)
Q Consensus        71 ----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~-~y~~~~~~~~~--~~~~~~TGD~~~~  125 (204)
                                            ++.++++|+++++++.|+.|||++++++++. +|+++++.+..  .++||+|||++++
T Consensus       310 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~~~y~~~~~~~~~~~~~~~~~TGD~~~~  389 (509)
T PRK12406        310 AVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQGEIGEIYSRIAGNPDFTYHNKPEKRAEIDRGGFITSGDVGYL  389 (509)
T ss_pred             ceEecCcccccccCCCcCccCCCcEEEEECCCCCCCCCCCceEEEEECCccccccccCCchhcccccCCCCeEEccEEEE
Confidence                                  5677889999999999999999999998764 89988877665  6899999999999


Q ss_pred             ecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       126 ~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      +++|.+++.||.||++|++|.+|+|.+||++|.++++|.++++++.++...++.+++++++.++...+.+++++.+++
T Consensus       390 ~~~g~~~~~GR~~d~ik~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~l~~  467 (509)
T PRK12406        390 DADGYLFLCDRKRDMVISGGVNIYPAEIEAVLHAVPGVHDCAVFGIPDAEFGEALMAVVEPQPGATLDEADIRAQLKA  467 (509)
T ss_pred             cCCceEEEeecccceEEECCEEECHHHHHHHHHhCCCeeEEEEEeeeccccCceeEEEEEECCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998877888999999887666678888887765

>PRK07514 malonyl-CoA synthase; Validated

Probab=99.98  E-value=1.4e-30  Score=219.11  Aligned_cols=193  Identities=34%  Similarity=0.538  Sum_probs=170.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.+  .++|.+.++|+++..++.......       ..++++|.+++||+++++++.+++.+.++..           
T Consensus       237 ~~~~i--~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  307 (504)
T PRK07514        237 VLALM--PRATVMMGVPTFYTRLLQEPRLTR-------EAAAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETN  307 (504)
T ss_pred             HHHHH--HhheeeecHHHHHHHHHcCCCCCc-------ccccceeeEEecCCCCCHHHHHHHHHHhCCcceeeccccccc
Confidence            34555  379999999999999887654444       5678999999999999999999998876532           


Q ss_pred             ---------------------ceEEEEEC-CCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEEE
Q psy13807         71 ---------------------HLIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFIL  125 (204)
Q Consensus        71 ---------------------~~~v~i~d-~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~~  125 (204)
                                           ++.++++| +++++++.|+.|||++++++++.||+++++.+..   .++||+|||++++
T Consensus       308 ~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~~Gel~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGDl~~~  387 (504)
T PRK07514        308 MNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGEIGMIEVKGPNVFKGYWRMPEKTAEEFRADGFFITGDLGKI  387 (504)
T ss_pred             ccccCCccccccCcccccCCCCcEEEEEECCCCCCCCCCCceEEEEecCCccccccCCchhhhhhcccCCCeeecceEEE
Confidence                                 67888999 6799999999999999999999999999887765   4789999999999


Q ss_pred             ecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       126 ~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      +++|.++++||.||+||++|.+++|.+||+.+.++++|.+++|++.++...++.++++++..++...+.+++++.+++
T Consensus       388 ~~~g~~~~~GR~~~~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  465 (504)
T PRK07514        388 DERGYVHIVGRGKDLIISGGYNVYPKEVEGEIDELPGVVESAVIGVPHPDFGEGVTAVVVPKPGAALDEAAILAALKG  465 (504)
T ss_pred             cCCccEEEeccccceEEeCCeEECHHHHHHHHHhCCCeeEEEEEeCCCCCcCceEEEEEEECCCCCCCHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999988777888999999987777788888888775

>PRK07787 acyl-CoA synthetase; Validated

Probab=99.98  E-value=1.7e-30  Score=217.37  Aligned_cols=191  Identities=28%  Similarity=0.520  Sum_probs=165.8

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++ +++|.+.++|+++..|.+.... .       ..++++|.+++||+++++++.+++.+.++..           
T Consensus       209 ~~~~i~-~~~t~~~~~P~~~~~l~~~~~~-~-------~~l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  279 (471)
T PRK07787        209 YAQALS-EGGTLYFGVPTVWSRIAADPEA-A-------RALRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETL  279 (471)
T ss_pred             HHHHHh-hCceEEEcchHHHHHHHhCccc-c-------ccccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccC
Confidence            678888 9999999999999988874322 1       4578999999999999999999998765432           


Q ss_pred             ---------------------ceEEEEECCCCCcCCC-C-CeeEEEEEeCcccccccCCcccccC---CCCceeccceEE
Q psy13807         71 ---------------------HLIVKVVDKKGNIVPM-G-MCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFI  124 (204)
Q Consensus        71 ---------------------~~~v~i~d~~g~~~~~-~-~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~  124 (204)
                                           ++.++++|++|.+++. + ..|||+++|++++.||+++++.+..   .++||+|||+++
T Consensus       280 ~~~~~~~~~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~~~Gei~v~g~~~~~gy~~~~~~t~~~~~~~~~~~TGDlg~  359 (471)
T PRK07787        280 ITLSTRADGERRPGWVGLPLAGVETRLVDEDGGPVPHDGETVGELQVRGPTLFDGYLNRPDATAAAFTADGWFRTGDVAV  359 (471)
T ss_pred             cceecCCCCcccCCcccccCCCcEEEEECCCCCCCCCCCCCceEEEEECcccchhhcCChhhchhcccCCCceecCceEE
Confidence                                 6778899999988873 4 3799999999999999999888766   478999999999


Q ss_pred             EecCCeEEEEeec-cceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        125 LHENGYGQVVGRI-KDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       125 ~~~~g~~~~~GR~-dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      +++||++++.||. ||+++++|.+++|.+||+++..++.|.+++|++.++...++.+++++++.  ...+.+++.++|++
T Consensus       360 ~~~dg~l~~~GR~~d~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~--~~~~~~~l~~~l~~  437 (471)
T PRK07787        360 VDPDGMHRIVGRESTDLIKSGGYRIGAGEIETALLGHPGVREAAVVGVPDDDLGQRIVAYVVGA--DDVAADELIDFVAQ  437 (471)
T ss_pred             EcCCCCEEEeCCCCceeEeeCCEEECHHHHHHHHHhCCCcceEEEEcccccccCeEEEEEEEeC--CCCCHHHHHHHHHh
Confidence            9999999999996 89999999999999999999999999999999998887788999999983  34677788888765

>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated

Probab=99.98  E-value=1.4e-30  Score=222.03  Aligned_cols=194  Identities=31%  Similarity=0.553  Sum_probs=172.0

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|+++..+........       ..+++++.+++||+++++.+.++|.+.+|.+           
T Consensus       293 ~~~~i~~~~vt~~~~~p~~~~~l~~~~~~~~-------~~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  365 (557)
T PRK07059        293 FIKELKKYQVHIFPAVNTLYNALLNNPDFDK-------LDFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETS  365 (557)
T ss_pred             HHHHHHHhCCeeeecCHHHHHHHHcCcCcCc-------CCchhheEEEeccccCCHHHHHHHHHHhCCCeeecccccccc
Confidence            5788999999999999999999988755444       5678999999999999999999888876543           


Q ss_pred             ----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEEE
Q psy13807         71 ----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFIL  125 (204)
Q Consensus        71 ----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~~  125 (204)
                                            ++.++++|++|++++.|..|||++++++++.||+++++.+..   .+|||+|||++++
T Consensus       366 ~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~  445 (557)
T PRK07059        366 PVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLGEPGEICIRGPQVMAGYWNRPDETAKVMTADGFFRTGDVGVM  445 (557)
T ss_pred             chhhcCCCCCCCcCCcccCccCCcEEEEECCCCCCCCCCCceEEEEeCCccchhhhcCHHHHhhhcccCCceecCcEEEE
Confidence                                  566889999999999999999999999999999999887765   5799999999999


Q ss_pred             ecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       126 ~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      +++|++++.||.+|+++++|.+++|.+||+++.++++|.+++|++.++...++.++++++..+ ...+.+++++++++
T Consensus       446 ~~~g~~~~~GR~~~~i~~~G~~i~p~~iE~~l~~~~~V~~~~v~~~~~~~~ge~~~~~v~~~~-~~~~~~~l~~~~~~  522 (557)
T PRK07059        446 DERGYTKIVDRKKDMILVSGFNVYPNEIEEVVASHPGVLEVAAVGVPDEHSGEAVKLFVVKKD-PALTEEDVKAFCKE  522 (557)
T ss_pred             cCCCcEEEecccccceEECCEEEcHHHHHHHHHhCCceeEEEEEecccCCCCeeEEEEEEeCC-CCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999998888888999888764 34667788877764

>PRK07638 acyl-CoA synthetase; Validated

Probab=99.98  E-value=1.1e-30  Score=219.15  Aligned_cols=187  Identities=32%  Similarity=0.496  Sum_probs=163.7

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC-c----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI-K----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~-~----------   70 (204)
                      +++.++++++|++.++|++++.|.+...           ...+...++++|+++++.+.+++.+.++. .          
T Consensus       223 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~-----------~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~  291 (487)
T PRK07638        223 VLDKLETENISVMYTVPTMLESLYKENR-----------VIENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASEL  291 (487)
T ss_pred             HHHHHHHcCCeEEEeCcHHHHHHHhCcC-----------cCCceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCcc
Confidence            6789999999999999999999987621           23455667889999999999999988742 1          


Q ss_pred             -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEEE
Q psy13807         71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFIL  125 (204)
Q Consensus        71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~  125 (204)
                                             ++.++++|++|.+++.|+.|||++++++++.||+++++.+..  .++||+|||++++
T Consensus       292 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~  371 (487)
T PRK07638        292 SFVTALVDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGEIGTVYVKSPQFFMGYIIGGVLARELNADGWMTVRDVGYE  371 (487)
T ss_pred             CceEEecccccCCCCCCCCcccCCcEEEEECCCCCCCCCCCCeEEEEecccceeeecCCHHHHhhhccCCcEecCccEeE
Confidence                                   678899999999999999999999999999999999876554  6889999999999


Q ss_pred             ecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       126 ~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      |++|++++.||++|+||++|.+|+|.+||+++.++|+|.+++|++.+++..++.++++++.    ..+.++++++|++
T Consensus       372 d~~g~l~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~----~~~~~~l~~~~~~  445 (487)
T PRK07638        372 DEEGFIYIVGREKNMILFGGINIFPEEIESVLHEHPAVDEIVVIGVPDSYWGEKPVAIIKG----SATKQQLKSFCLQ  445 (487)
T ss_pred             cCCCeEEEEecCCCeEEeCCEEECHHHHHHHHHhCCCeeeEEEEecCchhcCCeeEEEEEC----CCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988888888888874    3566777777764

>PLN02614 long-chain acyl-CoA synthetase

Probab=99.97  E-value=4.5e-31  Score=229.12  Aligned_cols=183  Identities=23%  Similarity=0.341  Sum_probs=146.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCC-----------------------------CCCCc--------ccccCC-C
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPL-----------------------------TEEMP--------NIAEEL-S   43 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-----------------------------~~~~~--------~~~~~l-~   43 (204)
                      +++.|++++||+++++|++++.+.......                             ....+        ..+..+ +
T Consensus       307 ~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~  386 (666)
T PLN02614        307 LIEDLGELKPTIFCAVPRVLDRVYSGLQKKLSDGGFLKKFVFDSAFSYKFGNMKKGQSHVEASPLCDKLVFNKVKQGLGG  386 (666)
T ss_pred             HHHHHHHhCCeEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHHHHHhCC
Confidence            678999999999999999999876421100                             00000        000012 6


Q ss_pred             CceEEEEeCCCCCHHHHHHHHHHhC-Cc---------------------------------ceEEEEEC-CC--CCcCCC
Q psy13807         44 SPVIALTAGAPCSPTLFNKIRDTFG-IK---------------------------------HLIVKVVD-KK--GNIVPM   86 (204)
Q Consensus        44 ~l~~~~~~G~~~~~~~~~~~~~~~g-~~---------------------------------~~~v~i~d-~~--g~~~~~   86 (204)
                      ++|.+++||+++++.+. ++.+.++ +.                                 +++++++| ++  +.+++.
T Consensus       387 ~lr~~~~Gga~l~~~~~-~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~  465 (666)
T PLN02614        387 NVRIILSGAAPLASHVE-SFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALAS  465 (666)
T ss_pred             cEEEEEEcCCCCCHHHH-HHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCC
Confidence            89999999999998764 4444543 22                                 67788887 33  478899


Q ss_pred             CCeeEEEEEeCcccccccCCcccccC--CCCceeccceEEEecCCeEEEEeeccceEEe-CceeeChHHHHHHHhcCCCc
Q psy13807         87 GMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIR-GGENIIPKEIEYVLQTHPDV  163 (204)
Q Consensus        87 ~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~-~G~~v~~~~ie~~l~~~~~V  163 (204)
                      |+.|||+++||+++.|||++|+.++.  .+|||+|||+|++|+||+++|.||.+|+||. +|++|+|.+||+++.+||+|
T Consensus       466 g~~GEl~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~gR~kd~ik~~~G~~V~p~eIE~~l~~~p~V  545 (666)
T PLN02614        466 TPRGEICIRGKTLFSGYYKREDLTKEVLIDGWLHTGDVGEWQPNGSMKIIDRKKNIFKLSQGEYVAVENIENIYGEVQAV  545 (666)
T ss_pred             CCCceEEEcCCcccccccCCHHHhhhhhccCCcccceEEEEcCCCCEEEEEcchhceecCCCeeecHHHHHHHHhcCCCe
Confidence            99999999999999999999998876  5899999999999999999999999999995 79999999999999999999


Q ss_pred             ceEEEEeeeCCCCCceEEEEEEeCC
Q psy13807        164 VEAQVYGVPDERLGEVVVANIELKP  188 (204)
Q Consensus       164 ~~~~v~~~~~~~~~~~~~a~v~~~~  188 (204)
                      .+++|++.+..   ..++|+|++..
T Consensus       546 ~~~~V~g~~~~---~~l~alvv~~~  567 (666)
T PLN02614        546 DSVWVYGNSFE---SFLVAIANPNQ  567 (666)
T ss_pred             eEEEEEecCCc---ceEEEEEeCCH
Confidence            99999987532   26889988753

>PRK06187 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=3e-30  Score=217.54  Aligned_cols=195  Identities=36%  Similarity=0.666  Sum_probs=175.6

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.++++|++++.|.+......       ..++++|.+++||+++++++.+++.+.++..           
T Consensus       247 ~~~~l~~~~~t~l~~~p~~~~~l~~~~~~~~-------~~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~  319 (521)
T PRK06187        247 LLDLIETERVTFFFAVPTIWQMLLKAPRAYF-------VDFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETS  319 (521)
T ss_pred             HHHHHHHhCCeEEEchHHHHHHHHcCcCCCc-------cCcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccC
Confidence            6789999999999999999999988776544       5788999999999999999999998876433           


Q ss_pred             ---------------------------ceEEEEECCCCCcCCC--CCeeEEEEEeCcccccccCCcccccC--CCCceec
Q psy13807         71 ---------------------------HLIVKVVDKKGNIVPM--GMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPS  119 (204)
Q Consensus        71 ---------------------------~~~v~i~d~~g~~~~~--~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~T  119 (204)
                                                 ++.++++|+++.+++.  |+.|||+++++.++.+|+++++.+..  .++||+|
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~~g~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~~~t  399 (521)
T PRK06187        320 PVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGDELPPDGGEVGEIIVRGPWLMQGYWNRPEATAETIDGGWLHT  399 (521)
T ss_pred             cccccCCcccccccccccCCccccccCCeEEEEECCCCCCCCCCCCCeeEEEEECcchhhhhcCCHHHHHHHhhCCceec
Confidence                                       3468889999999998  99999999999999999998876665  6779999


Q ss_pred             cceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHH
Q psy13807        120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKT  199 (204)
Q Consensus       120 GD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~  199 (204)
                      ||+++++++|.+++.||.+|++|++|.+++|.+||+++..+++|.+++|++.+++..++.+++++++.++...+..++++
T Consensus       400 GD~~~~~~~g~~~~~GR~~~~i~~~G~~v~~~~IE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  479 (521)
T PRK06187        400 GDVGYIDEDGYLYITDRIKDVIISGGENIYPRELEDALYGHPAVAEVAVIGVPDEKWGERPVAVVVLKPGATLDAKELRA  479 (521)
T ss_pred             cceEEEcCCCCEEEeecccceEEcCCeEECHHHHHHHHHhCCCceEEEEEeccCCCcCceEEEEEEECCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999998887888999999998877778888888


Q ss_pred             HHhc
Q psy13807        200 YCKG  203 (204)
Q Consensus       200 ~l~~  203 (204)
                      ++++
T Consensus       480 ~l~~  483 (521)
T PRK06187        480 FLRG  483 (521)
T ss_pred             HHHH
Confidence            8765

>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated

Probab=99.97  E-value=2.9e-30  Score=218.00  Aligned_cols=194  Identities=23%  Similarity=0.418  Sum_probs=169.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|++.++|++++.++.......       .....++.+.++ .++++.+..++.+.+|..           
T Consensus       254 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  325 (517)
T PRK08008        254 FWGQVCKYRATITECIPMMIRTLMVQPPSAN-------DRQHCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETI  325 (517)
T ss_pred             HHHHHHHcCCcEEechHHHHHHHHhCCCccc-------cccccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccc
Confidence            6788999999999999999998876544333       334578877765 478888888888775443           


Q ss_pred             ----------------------ceEEEEECCCCCcCCCCCeeEEEEEe---CcccccccCCcccccC---CCCceeccce
Q psy13807         71 ----------------------HLIVKVVDKKGNIVPMGMCGEVCYRG---YNVMLGYYGEENKILE---NDEWFPSGDF  122 (204)
Q Consensus        71 ----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~---~~~~~~y~~~~~~~~~---~~~~~~TGD~  122 (204)
                                            ++.++++|++|++++.|+.|||++++   ++++.|||++++.+..   .++||+|||+
T Consensus       326 ~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~~~~gy~~~~~~~~~~~~~~g~~~TGDl  405 (517)
T PRK08008        326 VGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEIGEICIKGVPGKTIFKEYYLDPKATAKVLEADGWLHTGDT  405 (517)
T ss_pred             cccccCCccccccCCccccCCCCcEEEEECCCCCCCCCCCcceEEEeCCCCcchhhhHhCChHHHhhcccCCCCeeccce
Confidence                                  57788999999999999999999997   5899999999988765   5789999999


Q ss_pred             EEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHh
Q psy13807        123 FILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK  202 (204)
Q Consensus       123 ~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  202 (204)
                      ++++++|.+++.||.+|++|++|.+++|.+||+++.+++.|.+++|++.+++..++.+.++|++.++...+.++++++++
T Consensus       406 ~~~~~~g~~~~~GR~~d~i~~~G~~i~p~~iE~~l~~~~~v~~~~v~g~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  485 (517)
T PRK08008        406 GYVDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFAFCE  485 (517)
T ss_pred             EEECCCCcEEEeecccceEEeCCEEECHHHHHHHHHhCCceeeEEEEccCCCCCCceEEEEEEECCCCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888888999999998877777888988887


Q ss_pred             c
Q psy13807        203 G  203 (204)
Q Consensus       203 ~  203 (204)
                      +
T Consensus       486 ~  486 (517)
T PRK08008        486 Q  486 (517)
T ss_pred             h
Confidence            5

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=99.97  E-value=1.4e-30  Score=237.58  Aligned_cols=192  Identities=27%  Similarity=0.395  Sum_probs=167.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|++++.+.+......       .+++++|.+++||+++++++.+++.+.+|.+           
T Consensus       864 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~  936 (1146)
T PRK08633        864 IAKLVAKHRATILLGTPTFLRLYLRNKKLHP-------LMFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETS  936 (1146)
T ss_pred             HHHHHHHcCCeEEEecHHHHHHHHhccccCc-------ccCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCc
Confidence            6789999999999999999999887654444       5688999999999999999999998876543           


Q ss_pred             -------------------------------ceEEEEECC-CCCcCCCCCeeEEEEEeCcccccccCCcccccC--CC--
Q psy13807         71 -------------------------------HLIVKVVDK-KGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--ND--  114 (204)
Q Consensus        71 -------------------------------~~~v~i~d~-~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~--  114 (204)
                                                     ++.++++|+ +++++|.|+.|||+++|++++.||+++++.+..  .+  
T Consensus       937 ~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~ 1016 (1146)
T PRK08633        937 PVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVDPETFEELPPGEDGLILIGGPQVMKGYLGDPEKTAEVIKDID 1016 (1146)
T ss_pred             ceEEEecCcccccccccccCCCCCCccccCCCCEEEEEcCCCCccCCCCCceEEEEcCCCccccccCCccchHHHhhcCC
Confidence                                           256778885 489999999999999999999999999987765  34  


Q ss_pred             --CceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCC--CcceEEEEeeeCCCCCceEEEEEEeCCCC
Q psy13807        115 --EWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHP--DVVEAQVYGVPDERLGEVVVANIELKPGA  190 (204)
Q Consensus       115 --~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~--~V~~~~v~~~~~~~~~~~~~a~v~~~~~~  190 (204)
                        +||+|||++++|+||++++.||.||++|++|++|+|.|||+++.++|  .+.+++|++.+++..++.++++++..   
T Consensus      1017 ~~~~~~TGD~~~~~~~g~l~~~gR~~d~i~~~G~~v~~~eiE~~l~~~~~~~~~~~~v~~~~~~~~g~~~~~~v~~~--- 1093 (1146)
T PRK08633       1017 GIGWYVTGDKGHLDEDGFLTITDRYSRFAKIGGEMVPLGAVEEELAKALGGEEVVFAVTAVPDEKKGEKLVVLHTCG--- 1093 (1146)
T ss_pred             CCCeEECCCEEEEcCCceEEEEecccchhhhCcEEECHHHHHHHHHhccCCCCceEEEEeccCCCCCcEEEEEEecC---
Confidence              89999999999999999999999999999999999999999999998  46689999999988889999988862   


Q ss_pred             CCCHHHHHHHHhc
Q psy13807        191 SLTQDDIKTYCKG  203 (204)
Q Consensus       191 ~~~~~~l~~~l~~  203 (204)
                      ..+.+++++++++
T Consensus      1094 ~~~~~~l~~~~~~ 1106 (1146)
T PRK08633       1094 AEDVEELKRAIKE 1106 (1146)
T ss_pred             ccCHHHHHHHHHh
Confidence            3566778777653

>TIGR03205 pimA dicarboxylate--CoA ligase PimA

Probab=99.97  E-value=4.2e-30  Score=218.33  Aligned_cols=195  Identities=33%  Similarity=0.551  Sum_probs=167.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.|+++++|++.++|+++..+.+......       ..+++++.+++||+++++++.+++.+.++..           
T Consensus       278 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~  350 (541)
T TIGR03205       278 VFRDIEEKRATVFPGVPTMWIALANDPSLEK-------RDLSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETC  350 (541)
T ss_pred             HHHHHHHcCCeEeechHHHHHHHHhCccccc-------cCccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCC
Confidence            6788999999999999999998886543333       4678999999999999999999988765543           


Q ss_pred             ----------------------ceEEEE--ECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEE
Q psy13807         71 ----------------------HLIVKV--VDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFI  124 (204)
Q Consensus        71 ----------------------~~~v~i--~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~  124 (204)
                                            ++.+++  +|+++++++.|+.|||++++++++.||+++++.+..  .++||+|||+++
T Consensus       351 ~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~  430 (541)
T TIGR03205       351 SPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPPGEVGELRIRGPNVTRGYWNRPEESAEAFVGDRFLTGDIGY  430 (541)
T ss_pred             cccccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCCCCeeEEEEecCCccccccCChhhhHhhhccCCcccCceEE
Confidence                                  233444  366688999999999999999999999999887765  578999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCC-CCHHHHHHHHhc
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS-LTQDDIKTYCKG  203 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~-~~~~~l~~~l~~  203 (204)
                      ++++|++++.||.||++|++|.+++|.+||+.+.++++|.+++|++.+++..++.+++++++.++.. .+.+++++++++
T Consensus       431 ~~~~g~l~i~GR~~~~i~~~G~~i~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~~  510 (541)
T TIGR03205       431 MDTDGYFFLVDRKKDMIISGGFNVYPQMIEQAIYEHPGVQEVIVIGIPDQYRGEAAKAFVKLRPGAKPFSLDELRAFLAG  510 (541)
T ss_pred             EcCCceEEEEccccCeEEECCEEECHHHHHHHHHhCCCeeeEEEEecCCcccCceEEEEEEECCCCCcCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999998877888999999876643 567788887765

PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.

>PLN02736 long-chain acyl-CoA synthetase

Probab=99.97  E-value=1.1e-30  Score=226.46  Aligned_cols=184  Identities=27%  Similarity=0.409  Sum_probs=147.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCC-------------------------CCCCcc---------cccCC-CCce
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPL-------------------------TEEMPN---------IAEEL-SSPV   46 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~-------------------------~~~~~~---------~~~~l-~~l~   46 (204)
                      +++.|+++++|+++++|++++.+.+.....                         ......         ....+ +++|
T Consensus       300 ~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~lr  379 (651)
T PLN02736        300 LMDDLAALRPTIFCSVPRLYNRIYDGITNAVKESGGLKERLFNAAYNAKKQALENGKNPSPMWDRLVFNKIKAKLGGRVR  379 (651)
T ss_pred             HHHHHHHhCCcEEecchHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHhcCcEE
Confidence            678899999999999999998876532100                         000000         00012 4899


Q ss_pred             EEEEeCCCCCHHHHHHHHHHhCCc--------------------------------ceEEEEECCC-CC---cCCCCCee
Q psy13807         47 IALTAGAPCSPTLFNKIRDTFGIK--------------------------------HLIVKVVDKK-GN---IVPMGMCG   90 (204)
Q Consensus        47 ~~~~~G~~~~~~~~~~~~~~~g~~--------------------------------~~~v~i~d~~-g~---~~~~~~~G   90 (204)
                      .+++||+++++++.+++.+.+|..                                ++.++++|.+ +.   ...++..|
T Consensus       380 ~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~~~~G  459 (651)
T PLN02736        380 FMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQPYPRG  459 (651)
T ss_pred             EEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCCCCCc
Confidence            999999999999999998776643                                6677888732 21   22233569


Q ss_pred             EEEEEeCcccccccCCcccccC---CCCceeccceEEEecCCeEEEEeeccceEEe-CceeeChHHHHHHHhcCCCcceE
Q psy13807         91 EVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIIIR-GGENIIPKEIEYVLQTHPDVVEA  166 (204)
Q Consensus        91 el~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~-~G~~v~~~~ie~~l~~~~~V~~~  166 (204)
                      ||+++||+++.|||++++.+..   .+|||+|||+|++|+||+++|.||.+|+||+ +|++|+|.+||++|..+|.|.++
T Consensus       460 El~vrgp~v~~GY~~~~~~t~~~~~~dgw~~TGDlg~~d~dG~l~i~GR~kd~ik~~~G~~V~p~eIE~~l~~~p~V~~a  539 (651)
T PLN02736        460 EICVRGPIIFKGYYKDEVQTREVIDEDGWLHTGDIGLWLPGGRLKIIDRKKNIFKLAQGEYIAPEKIENVYAKCKFVAQC  539 (651)
T ss_pred             eEEecCCccccccccCHHHHHhhhccCCCeeccceEEEcCCCcEEEEEechhheEcCCCcEechHHHHHHHhcCCCeeEE
Confidence            9999999999999999998876   5899999999999999999999999999996 79999999999999999999999


Q ss_pred             EEEeeeCCCCCceEEEEEEeCC
Q psy13807        167 QVYGVPDERLGEVVVANIELKP  188 (204)
Q Consensus       167 ~v~~~~~~~~~~~~~a~v~~~~  188 (204)
                      +|++.   ..++.++|+|++.+
T Consensus       540 ~V~g~---~~~~~~~A~vv~~~  558 (651)
T PLN02736        540 FVYGD---SLNSSLVAVVVVDP  558 (651)
T ss_pred             EEEec---CCCceeEEEEEeCH
Confidence            99983   24568999999865

>PLN02861 long-chain-fatty-acid-CoA ligase

Probab=99.97  E-value=8.2e-31  Score=227.38  Aligned_cols=182  Identities=23%  Similarity=0.363  Sum_probs=141.4

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCC-----------------------------CCCCCccc--------ccCC-C
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQP-----------------------------LTEEMPNI--------AEEL-S   43 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-----------------------------~~~~~~~~--------~~~l-~   43 (204)
                      +++.|++++||+++++|++++.|......                             .....+..        +..+ .
T Consensus       304 ~~~~i~~~~~T~~~~vP~~~~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~lg~  383 (660)
T PLN02861        304 LMEDVQALKPTIFCGVPRVYDRIYTGIMQKISSGGMLRKKLFDFAYNYKLGNLRKGLKQEEASPRLDRLVFDKIKEGLGG  383 (660)
T ss_pred             HHHHHHHhCCcEEeechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCcCccHhHHHHHHHHHHHHhCC
Confidence            67889999999999999999988641000                             00000000        0012 5


Q ss_pred             CceEEEEeCCCCCHHHHHHHHHHhCC-c---------------------------------ceEEEEEC--CCC-CcCCC
Q psy13807         44 SPVIALTAGAPCSPTLFNKIRDTFGI-K---------------------------------HLIVKVVD--KKG-NIVPM   86 (204)
Q Consensus        44 ~l~~~~~~G~~~~~~~~~~~~~~~g~-~---------------------------------~~~v~i~d--~~g-~~~~~   86 (204)
                      ++|.+++||+++++++.+ +.+.++. .                                 +++++++|  ++| ..++.
T Consensus       384 ~lr~~~~Ggapl~~~~~~-~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~  462 (660)
T PLN02861        384 RVRLLLSGAAPLPRHVEE-FLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSD  462 (660)
T ss_pred             cEEEEEECCCCCCHHHHH-HHHHHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCC
Confidence            799999999999999865 5445443 1                                 45556655  223 23344


Q ss_pred             CCeeEEEEEeCcccccccCCcccccC--CCCceeccceEEEecCCeEEEEeeccceEEe-CceeeChHHHHHHHhcCCCc
Q psy13807         87 GMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIR-GGENIIPKEIEYVLQTHPDV  163 (204)
Q Consensus        87 ~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~-~G~~v~~~~ie~~l~~~~~V  163 (204)
                      +..|||+++||+++.|||++|+.+..  .+|||+|||+|++|+||+++|.||+||+||. +|++|+|.+||+++.++|.|
T Consensus       463 ~~~GEi~vrGp~v~~GY~~~pe~T~~~f~dGw~~TGDlg~~d~dG~l~i~GR~kd~Ik~~~G~~I~p~eIE~~l~~~p~V  542 (660)
T PLN02861        463 VPRGEICLRGNTLFSGYHKRQDLTEEVLIDGWFHTGDIGEWQPNGAMKIIDRKKNIFKLSQGEYVAVENLENTYSRCPLI  542 (660)
T ss_pred             CCceeEEEcCCcccccccCCHHHHHhhhhccCcccCceEEECCCCcEEEEeccccceEcCCCeEEcHHHHHHHHhcCCCe
Confidence            56799999999999999999998876  6899999999999999999999999999995 79999999999999999999


Q ss_pred             ceEEEEeeeCCCCCceEEEEEEeC
Q psy13807        164 VEAQVYGVPDERLGEVVVANIELK  187 (204)
Q Consensus       164 ~~~~v~~~~~~~~~~~~~a~v~~~  187 (204)
                      .+++|++.+   .++.++|+|++.
T Consensus       543 ~~a~V~G~~---~~~~~~A~vv~~  563 (660)
T PLN02861        543 ASIWVYGNS---FESFLVAVVVPD  563 (660)
T ss_pred             eEEEEEecC---CcceeEEEEEcC
Confidence            999999975   235789999875

>PRK06018 putative acyl-CoA synthetase; Provisional

Probab=99.97  E-value=8.2e-30  Score=216.62  Aligned_cols=194  Identities=28%  Similarity=0.504  Sum_probs=168.4

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|++++.|.+......       .+++++|.++++|+++++++.++|++ ++.+           
T Consensus       260 ~~~~l~~~~~t~~~~~p~~~~~l~~~~~~~~-------~~~~~lr~~~~~G~~l~~~~~~~~~~-~~~~~~~~YG~tE~~  331 (542)
T PRK06018        260 VYELLDTEKVTFTAGVPTVWLMLLQYMEKEG-------LKLPHLKMVVCGGSAMPRSMIKAFED-MGVEVRHAWGMTEMS  331 (542)
T ss_pred             HHHHHHhcCCceeecCcHHHHHHHhcccccC-------CCcccceEEEEcCCCCCHHHHHHHHH-hCCCeEeeecccccC
Confidence            5788999999999999999999987665444       56789999999999999999999987 5433           


Q ss_pred             --------------------------------ceEEEEECCCCCcCCCC--CeeEEEEEeCcccccccCCcccccCCCCc
Q psy13807         71 --------------------------------HLIVKVVDKKGNIVPMG--MCGEVCYRGYNVMLGYYGEENKILENDEW  116 (204)
Q Consensus        71 --------------------------------~~~v~i~d~~g~~~~~~--~~Gel~v~~~~~~~~y~~~~~~~~~~~~~  116 (204)
                                                      ++.++++|+++.+++.+  ..|||++++++++.||++........++|
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d~~~~~~~~~~~~~Gel~i~g~~~~~gy~~~~~~~~~~~~~  411 (542)
T PRK06018        332 PLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITDDAGKELPWDGKTFGRLKVRGPAVAAAYYRVDGEILDDDGF  411 (542)
T ss_pred             cccccccCccccccCCchhhhhccccCCCCCCCcEEEEECCCCCCCCCCCCceeEEEEecCCcchhhhcCcccEecCCcE
Confidence                                            24577788888888754  67999999999999999854333336899


Q ss_pred             eeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHH
Q psy13807        117 FPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDD  196 (204)
Q Consensus       117 ~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~  196 (204)
                      |+|||+++++++|++++.||.+|+++++|.++++.+||+++..+|+|.+++|++.+++..++.+.++|++.++...+.++
T Consensus       412 ~~TGDl~~~~~~g~~~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~  491 (542)
T PRK06018        412 FDTGDVATIDAYGYMRITDRSKDVIKSGGEWISSIDLENLAVGHPKVAEAAVIGVYHPKWDERPLLIVQLKPGETATREE  491 (542)
T ss_pred             EEcCCEEEEcCCccEEEEecCCCeEEECCEEECHHHHHHHHHhCCcceeEEEEeccCCCcCceeEEEEEeCCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999887788999999998887778888


Q ss_pred             HHHHHhc
Q psy13807        197 IKTYCKG  203 (204)
Q Consensus       197 l~~~l~~  203 (204)
                      +++++++
T Consensus       492 l~~~~~~  498 (542)
T PRK06018        492 ILKYMDG  498 (542)
T ss_pred             HHHHHHh
Confidence            8888775

>TIGR02262 benz_CoA_lig benzoate-CoA ligase family

Probab=99.97  E-value=6.9e-30  Score=215.38  Aligned_cols=195  Identities=27%  Similarity=0.420  Sum_probs=168.7

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|+++..++.......       ....+++.++++|+++++++.+.|.+.+|..           
T Consensus       244 ~~~~i~~~~~t~~~~~P~~~~~~~~~~~~~~-------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~  316 (508)
T TIGR02262       244 VFDRLRRHQPTIFYGVPTLYAAMLADPNLPA-------EDQVRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEML  316 (508)
T ss_pred             HHHHHHHHCCcEEecchHHHHHHhcCccccc-------cccccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccC
Confidence            6788999999999999999988876544333       4567899999999999999999998876543           


Q ss_pred             ---------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEEEec
Q psy13807         71 ---------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHE  127 (204)
Q Consensus        71 ---------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~~~  127 (204)
                                           ++.++++|+++.+++.|+.|||++++++++.+|+++++.+..  .++||+|||++++++
T Consensus       317 ~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~Gel~i~~~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~~  396 (508)
T TIGR02262       317 HIFLSNLPGDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEPGELLISGPSSATMYWNNRAKTRDTFQGEWTRSGDKYVRND  396 (508)
T ss_pred             ceeecCCccCCCCCCcCCCCCCcEEEEECCCCCCCCCCCeeEEEEecCccccccCCCHHHhHhhhhcCceeccceEEEcC
Confidence                                 456889998899999999999999999999999999887765  678999999999999


Q ss_pred             CCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCC---CCHHHHHHHHhc
Q psy13807        128 NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS---LTQDDIKTYCKG  203 (204)
Q Consensus       128 ~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~---~~~~~l~~~l~~  203 (204)
                      +|.+++.||.+|+++++|.+++|.+||+.+.++++|.++++++.++......+.+++++.++..   ...+++++.+++
T Consensus       397 ~g~~~~~gR~~d~i~~~G~~v~~~~ie~~l~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~~~~  475 (508)
T TIGR02262       397 DGSYTYAGRTDDMLKVSGIYVSPFEIESALIQHPAVLEAAVVGVEDEDGLIKPKAFIVLRPGQDIDTALETELKEHVKD  475 (508)
T ss_pred             CccEEEeccccceeeeCCEEECHHHHHHHHHhCCCeeEEEEEeccccCCCceeEEEEEeCCCCccccccHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999887767778889998876543   235667776664

Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.

>PLN03102 acyl-activating enzyme; Provisional

Probab=99.97  E-value=4.7e-30  Score=219.78  Aligned_cols=194  Identities=31%  Similarity=0.511  Sum_probs=159.6

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc----------c
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------H   71 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------~   71 (204)
                      +++.|+++++|.+.++|++++.|.+......       ...++++.+++||+++++.+.+++.+ +|..          +
T Consensus       266 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~~~~~~~gg~~~~~~~~~~~~~-~g~~i~~~YG~tE~~  337 (579)
T PLN03102        266 IYKNIEMHNVTHMCCVPTVFNILLKGNSLDL-------SPRSGPVHVLTGGSPPPAALVKKVQR-LGFQVMHAYGLTEAT  337 (579)
T ss_pred             HHHHHHHcCCeEEEeChHHHHHHHhCccccc-------CCcccceEEEECCCCCCHHHHHHHHH-cCCeEEeecCccccC
Confidence            6789999999999999999999987643322       34567888999999999999988865 3332          0


Q ss_pred             ----------------------------------eEEEEECCC-CCcCCC--CCeeEEEEEeCcccccccCCcccccC--
Q psy13807         72 ----------------------------------LIVKVVDKK-GNIVPM--GMCGEVCYRGYNVMLGYYGEENKILE--  112 (204)
Q Consensus        72 ----------------------------------~~v~i~d~~-g~~~~~--~~~Gel~v~~~~~~~~y~~~~~~~~~--  112 (204)
                                                        ..+.+.|++ +++++.  +..|||+++|++++.|||++++.+..  
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~v~i~~~~~~~~v~~~~~~~GEl~v~g~~~~~GY~~~~~~t~~~f  417 (579)
T PLN03102        338 GPVLFCEWQDEWNRLPENQQMELKARQGVSILGLADVDVKNKETQESVPRDGKTMGEIVIKGSSIMKGYLKNPKATSEAF  417 (579)
T ss_pred             ccccccccccccccCCcccccccccCCCcccccccceEEeccccccccCCCCCCceEEEEECcchhhhhcCChhhhHhhh
Confidence                                              012333422 455654  36799999999999999999887766  


Q ss_pred             CCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCC
Q psy13807        113 NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASL  192 (204)
Q Consensus       113 ~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~  192 (204)
                      .+|||+|||++++|++|++++.||.+|+||++|.+|+|.+||+++.++|.|.+++|++.+++..++.++++|++.++...
T Consensus       418 ~~gw~~TGDlg~~d~dG~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~  497 (579)
T PLN03102        418 KHGWLNTGDVGVIHPDGHVEIKDRSKDIIISGGENISSVEVENVLYKYPKVLETAVVAMPHPTWGETPCAFVVLEKGETT  497 (579)
T ss_pred             ccCceecCceEEEcCCCeEEEEeccCcEEEECCEEECHHHHHHHHHhCCCcceeEEEeccCccccceeEEEEEecCcccc
Confidence            68999999999999999999999999999999999999999999999999999999999998888899999998765433


Q ss_pred             ----------CHHHHHHHHhc
Q psy13807        193 ----------TQDDIKTYCKG  203 (204)
Q Consensus       193 ----------~~~~l~~~l~~  203 (204)
                                +..++++++++
T Consensus       498 ~~~~~~~~~~~~~~l~~~~~~  518 (579)
T PLN03102        498 KEDRVDKLVTRERDLIEYCRE  518 (579)
T ss_pred             cccccccccccHHHHHHHHHh
Confidence                      34567777765

>PRK07786 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=6.7e-30  Score=217.19  Aligned_cols=194  Identities=35%  Similarity=0.539  Sum_probs=169.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC-Cc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG-IK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g-~~----------   70 (204)
                      +++.++++++|.++++|++++.+........        ...+++.+++||+++++++.+++.+.|+ ..          
T Consensus       257 ~~~~i~~~~~t~~~~~P~~l~~l~~~~~~~~--------~~~~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~  328 (542)
T PRK07786        257 LLDVLEAEKVTGIFLVPAQWQAVCAEQQARP--------RDLALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEM  328 (542)
T ss_pred             HHHHHHHcCCeEEEehHHHHHHHHhCcccCc--------cCcceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeeccccc
Confidence            6789999999999999999999987654322        2247999999999999999999988763 21          


Q ss_pred             ------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEE
Q psy13807         71 ------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFI  124 (204)
Q Consensus        71 ------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~  124 (204)
                                              ++.++++|+++++++.|+.|||+++|+.++.||+++++.+..  .++||+|||+++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~f~~~~~~TGDl~~  408 (542)
T PRK07786        329 SPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGEVGEIVYRAPTLMSGYWNNPEATAEAFAGGWFHSGDLVR  408 (542)
T ss_pred             ccceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCCceEEEEEChhhhhhhcCCHHHHHHHhhCCcccccceEE
Confidence                                    467888999999999999999999999999999999887765  679999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCC-CCCHHHHHHHHhc
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA-SLTQDDIKTYCKG  203 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~-~~~~~~l~~~l~~  203 (204)
                      ++++|.++++||.+|++|++|.++++.+||+++.++|+|.+++|++.+++..++.+++++++.++. ....++++++|++
T Consensus       409 ~~~~g~~~i~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~l~~  488 (542)
T PRK07786        409 QDEEGYVWVVDRKKDMIISGGENIYCAEVENVLASHPDIVEVAVIGRADEKWGEVPVAVAAVRNDDAALTLEDLAEFLTD  488 (542)
T ss_pred             EcCCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCcccCceEEEEEEECCCCCCCCHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999998877778899999887543 3566788887765

>PRK07769 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=2.5e-30  Score=223.45  Aligned_cols=199  Identities=23%  Similarity=0.408  Sum_probs=158.7

Q ss_pred             HhHHHHHcCc---cEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC---C------
Q psy13807          2 ISRHIVKEKC---TVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG---I------   69 (204)
Q Consensus         2 ~~~~i~~~~~---t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g---~------   69 (204)
                      +++.++++++   +.+.++|+++..+...........  ...+++++|.+++||+++++++.++|.+.|+   .      
T Consensus       264 ~~~~i~~~~~~~~~~~~~~p~~~~~l~~~~~~~~~~~--~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~  341 (631)
T PRK07769        264 WIRELARKPGGTGGTFSAAPNFAFEHAAARGLPKDGE--PPLDLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIK  341 (631)
T ss_pred             HHHHHHhhccccCceEeeCCchHHHHHHhhccchhcc--cCcchhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcc
Confidence            5677888876   789999998876654321110000  0146889999999999999999999988762   1      


Q ss_pred             -----c---------------------------------------------------ceEEEEECC-CCCcCCCCCeeEE
Q psy13807         70 -----K---------------------------------------------------HLIVKVVDK-KGNIVPMGMCGEV   92 (204)
Q Consensus        70 -----~---------------------------------------------------~~~v~i~d~-~g~~~~~~~~Gel   92 (204)
                           +                                                   +..++++|+ +|+++|.|+.|||
T Consensus       342 ~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl  421 (631)
T PRK07769        342 PSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPADAPNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEI  421 (631)
T ss_pred             cccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCCCCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEE
Confidence                 1                                                   011346664 5889999999999


Q ss_pred             EEEeCcccccccCCcccccC--------------------CCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHH
Q psy13807         93 CYRGYNVMLGYYGEENKILE--------------------NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKE  152 (204)
Q Consensus        93 ~v~~~~~~~~y~~~~~~~~~--------------------~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~  152 (204)
                      +++||+++.|||++++.+..                    .++||+|||+|+++ +|+++|+||.||+||++|++|+|.|
T Consensus       422 ~v~gp~v~~GY~~~~~~t~~~f~~~~~~~~~~~~~~~~~~~~gw~~TGDlg~~~-dG~l~i~GR~~d~Ik~~G~~V~p~e  500 (631)
T PRK07769        422 WLHGNNIGTGYWGKPEETAATFQNILKSRLSESHAEGAPDDALWVRTGDYGVYF-DGELYITGRVKDLVIIDGRNHYPQD  500 (631)
T ss_pred             EecCCCccccccCChhHHHHHHhhhcccccccccccCcccCCCeeeccccccEE-CCEEEEEcccccEEEECCeeeCHHH
Confidence            99999999999999876543                    14899999999995 9999999999999999999999999


Q ss_pred             HHHHHhc-CCCcce--EEEEeeeC-------------------CCCCceEEEEEEeCCC-CCCCHHHHHHHHhc
Q psy13807        153 IEYVLQT-HPDVVE--AQVYGVPD-------------------ERLGEVVVANIELKPG-ASLTQDDIKTYCKG  203 (204)
Q Consensus       153 ie~~l~~-~~~V~~--~~v~~~~~-------------------~~~~~~~~a~v~~~~~-~~~~~~~l~~~l~~  203 (204)
                      ||++|.+ +|.|.+  ++|+++++                   +..++.++++|++.++ ...+.++|.++|++
T Consensus       501 IE~~l~~~~p~v~~~~~av~~v~d~~~~~~~~~~~~~~~~~~~~~~ge~~~a~v~~~~~~~~~~~~~l~~~~~~  574 (631)
T PRK07769        501 LEYTAQEATKALRTGYVAAFSVPANQLPQVVFDDSHAGLKFDPEDTSEQLVIVAERAPGAHKLDPQPIADDIRA  574 (631)
T ss_pred             HHHHHHhccccccCCcEEEEEecccccccccccccccccccccCCCCccEEEEEEecCccccccHHHHHHHHHH
Confidence            9999986 899998  99999988                   4577889999999876 35677888888765

>PRK05857 acyl-CoA synthetase; Validated

Probab=99.97  E-value=4e-30  Score=218.49  Aligned_cols=181  Identities=23%  Similarity=0.388  Sum_probs=154.0

Q ss_pred             CHhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc----------
Q psy13807          1 MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------   70 (204)
Q Consensus         1 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------   70 (204)
                      .+++++++|++|.+.++|++++.|.+......       .+++++|.+++||++++....+++ +.+|.+          
T Consensus       251 ~~~~~i~~~~it~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~~~~gG~~~~~~~~~~~-~~~g~~i~~~YG~TE~  322 (540)
T PRK05857        251 SLLEILTTNAVATTCLVPTLLSKLVSELKSAN-------ATVPSLRLVGYGGSRAIAADVRFI-EATGVRTAQVYGLSET  322 (540)
T ss_pred             HHHHHHHhcCcceEEeChHHHHHHHhccccCC-------CcCccceEEEEcCccCCchhHHHH-HHhCCeeecccCCCcC
Confidence            37889999999999999999999987654433       578899999999999987776544 343322          


Q ss_pred             ---------------------------ceEEEEECCCCCc------CCCCCeeEEEEEeCcccccccCCcccccC--CCC
Q psy13807         71 ---------------------------HLIVKVVDKKGNI------VPMGMCGEVCYRGYNVMLGYYGEENKILE--NDE  115 (204)
Q Consensus        71 ---------------------------~~~v~i~d~~g~~------~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~  115 (204)
                                                 ++.++++|+++..      ++.++.|||++++++++.||+++++.+..  .+|
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~~~~~~~~~~Gel~v~g~~~~~GY~~~~~~t~~~~~~g  402 (540)
T PRK05857        323 GCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGPTAPGAGPSASFGTLWIKSPANMLGYWNNPERTAEVLIDG  402 (540)
T ss_pred             CceeeecccccccccccccCCcCcccCCcEEEEECccccCccccccCCCCCcceEEEeCcchhhhhhCCccchhhhcCCC
Confidence                                       4667778877652      24578899999999999999999887765  689


Q ss_pred             ceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCC
Q psy13807        116 WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG  189 (204)
Q Consensus       116 ~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~  189 (204)
                      ||+|||++++|++|++++.||.+|+||++|.+|+|.+||++|..+|+|.+++|++.++...++.++++++..+.
T Consensus       403 ~~~TGDlg~~d~~g~l~~~GR~~~~ik~~G~~v~p~eIE~~l~~~~~V~~~~v~~~~~~~~~~~~~~~vv~~~~  476 (540)
T PRK05857        403 WVNTGDLLERREDGFFYIKGRSSEMIICGGVNIAPDEVDRIAEGVSGVREAACYEIPDEEFGALVGLAVVASAE  476 (540)
T ss_pred             ceeccceEEEcCCceEEEeccccccEecCCEEECHHHHHHHHHhCCCeeEEEEEecCccccccceEEEEEeCCC
Confidence            99999999999999999999999999999999999999999999999999999999987777788888887643

>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated

Probab=99.97  E-value=9.2e-30  Score=214.65  Aligned_cols=195  Identities=25%  Similarity=0.373  Sum_probs=170.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC-Cc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG-IK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g-~~----------   70 (204)
                      +++.++++++|.+.++|++++.|.+.... .       ..++++|.++++|+++++++.+++.+.++ ..          
T Consensus       241 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~-------~~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~  312 (515)
T TIGR03098       241 VLKALEKHGITGLAAVPPLWAQLAQLDWP-E-------SAAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEA  312 (515)
T ss_pred             HHHHHHHcCCceEecChHHHHHHHhcccC-C-------CCccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccc
Confidence            67899999999999999999988764221 1       35679999999999999999999998763 21          


Q ss_pred             -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--------------C
Q psy13807         71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--------------N  113 (204)
Q Consensus        71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--------------~  113 (204)
                                             ++.++++|++|++++.|+.|||+++|+.++.|||++++.+..              .
T Consensus       313 ~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~~~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~~~~~  392 (515)
T TIGR03098       313 FRSTYLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECAPGEEGELVHRGALVAMGYWNDPEKTAERFRPLPPRPGELHLP  392 (515)
T ss_pred             cceEecccccccCCCCCcceecCCCEEEEECCCCCCCCCCCceEEEEcCchhhccccCCchhhhhhhhccCCcccccccc
Confidence                                   567888998999999999999999999999999998765532              2


Q ss_pred             CCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC
Q psy13807        114 DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT  193 (204)
Q Consensus       114 ~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~  193 (204)
                      ++||+|||+++++++|++++.||.+|+++++|.+|+|.+||+++.++|.|.+++|++.+++..++.++++++..++...+
T Consensus       393 ~~~~~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~  472 (515)
T TIGR03098       393 ELAVWSGDTVRRDEEGFLYFVGRRDEMIKTSGYRVSPTEVEEVAYATGLVAEAVAFGVPDPTLGQAIVLVVTPPGGEELD  472 (515)
T ss_pred             ccceeccceEEEcCCceEEEEeccccceecCCEEeCHHHHHHHHhcCCCeeEEEEEeccCcccCceEEEEEEeCCCCCCC
Confidence            45899999999999999999999999999999999999999999999999999999999888889999999876666678


Q ss_pred             HHHHHHHHhcC
Q psy13807        194 QDDIKTYCKGK  204 (204)
Q Consensus       194 ~~~l~~~l~~~  204 (204)
                      .++++++|+++
T Consensus       473 ~~~l~~~l~~~  483 (515)
T TIGR03098       473 RAALLAECRAR  483 (515)
T ss_pred             HHHHHHHHHhh
Confidence            88888888753

This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.

>PRK10252 entF enterobactin synthase subunit F; Provisional

Probab=99.97  E-value=5.8e-30  Score=236.08  Aligned_cols=198  Identities=19%  Similarity=0.300  Sum_probs=166.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|++++.+++......     ....++++|.+++||+++++++.++|.+.++..           
T Consensus       681 ~~~~i~~~~vt~~~~~Ps~l~~l~~~~~~~~-----~~~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~  755 (1296)
T PRK10252        681 MQQFFAEYGVTTTHFVPSMLAAFVASLTPEG-----ARQSCASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAA  755 (1296)
T ss_pred             HHHHHHHcCCeEEEeCHHHHHHHHhhhcccc-----ccccCCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhh
Confidence            6789999999999999999998887643221     003468999999999999999999998765432           


Q ss_pred             ----------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---------C
Q psy13807         71 ----------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---------N  113 (204)
Q Consensus        71 ----------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---------~  113 (204)
                                                  ++.++|+|++++++|.|..|||+++|++++.||+++++.+..         .
T Consensus       756 ~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~g~~Gel~i~g~~~~~GY~~~~~~t~~~f~~~~~~~~  835 (1296)
T PRK10252        756 VDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMRPVPPGVAGDLYLTGIQLAQGYLGRPDLTASRFIADPFAPG  835 (1296)
T ss_pred             heeeeeecccccccccCCCCCCcccccCCCEEEEECCCCCCCCCCCceEEEecccccchhhCCCcccchhhcccCCCCCC
Confidence                                        345678899999999999999999999999999999987754         2


Q ss_pred             CCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeC----CCCC--ceEEEEEEeC
Q psy13807        114 DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPD----ERLG--EVVVANIELK  187 (204)
Q Consensus       114 ~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~----~~~~--~~~~a~v~~~  187 (204)
                      ++||+|||++++++||.++++||.||+||++|++|+|.|||++|.++|+|.+++|++...    ...+  ..++++|+..
T Consensus       836 ~~~y~TGDl~~~~~~G~l~~~GR~d~~ik~~G~ri~~~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~~~lva~v~~~  915 (1296)
T PRK10252        836 ERMYRTGDVARWLDDGAVEYLGRSDDQLKIRGQRIELGEIDRAMQALPDVEQAVTHACVINQAAATGGDARQLVGYLVSQ  915 (1296)
T ss_pred             CEEEecCceEEEcCCCcEEEecccCCeEEEeeEEecHHHHHHHHHhCccccceEEEEEeccccccCCCCccEEEEEEEcC
Confidence            459999999999999999999999999999999999999999999999999998876531    1122  4799999988


Q ss_pred             CCCCCCHHHHHHHHhcC
Q psy13807        188 PGASLTQDDIKTYCKGK  204 (204)
Q Consensus       188 ~~~~~~~~~l~~~l~~~  204 (204)
                      ++...+.++|+++++++
T Consensus       916 ~~~~~~~~~l~~~l~~~  932 (1296)
T PRK10252        916 SGLPLDTSALQAQLRER  932 (1296)
T ss_pred             CCCCCCHHHHHHHHHhh
Confidence            77667788899888753

>PRK08974 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=1.1e-29  Score=216.54  Aligned_cols=194  Identities=31%  Similarity=0.511  Sum_probs=169.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|++++.+........       ..++++|.+++||+++++.+.++|.+.+|..           
T Consensus       291 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~-------~~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~  363 (560)
T PRK08974        291 FVKELKKYPFTAITGVNTLFNALLNNEEFQE-------LDFSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECS  363 (560)
T ss_pred             HHHHHHhcCcceEcCcHHHHHHHHhCcCccc-------CCccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccC
Confidence            5778999999999999999999987654333       5678999999999999999999998876543           


Q ss_pred             ----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEEEe
Q psy13807         71 ----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILH  126 (204)
Q Consensus        71 ----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~~  126 (204)
                                            ++.++++|+++++++.|+.|||+++++.++.+|+++++.+..  .++||+|||+++++
T Consensus       364 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~  443 (560)
T PRK08974        364 PLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGEPGELWVKGPQVMLGYWQRPEATDEVIKDGWLATGDIAVMD  443 (560)
T ss_pred             ceeeccCCCCcccCCccccCcCCCEEEEECCCCCCCCCCCceEEEEecCCcchhhcCChhhhhhhhhcCCcccCCEEEEc
Confidence                                  456888999999999999999999999999999998887655  67899999999999


Q ss_pred             cCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       127 ~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      ++|.++++||.+|+++++|.+++|.+||+.+.++|+|.+++|++.++...++.++++++..+ ...+.+++++++++
T Consensus       444 ~~g~l~i~GR~~d~i~~~G~~i~~~~IE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~-~~~~~~~l~~~l~~  519 (560)
T PRK08974        444 EEGFLRIVDRKKDMILVSGFNVYPNEIEDVVMLHPKVLEVAAVGVPSEVSGEAVKIFVVKKD-PSLTEEELITHCRR  519 (560)
T ss_pred             CCceEEEEecccceEEeCCEEECHHHHHHHHHhCCCeeEEEEEeeecCCcceEEEEEEECCC-CCCCHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999998877877888777653 34566777777664

>PRK12467 peptide synthase; Provisional

Probab=99.97  E-value=2.1e-30  Score=255.43  Aligned_cols=193  Identities=21%  Similarity=0.268  Sum_probs=169.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC---------Cc--
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG---------IK--   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g---------~~--   70 (204)
                      +++.|+++++|++.++|++++.+++...  .       ..+++||.+++||+++++++.++|.+.++         .+  
T Consensus      3319 l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~-------~~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~ 3389 (3956)
T PRK12467       3319 LWQAIHAHRISIACFPPAYLQQFAEDAG--G-------ADCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEA 3389 (3956)
T ss_pred             HHHHHHHcCCEEEEcCHHHHHHHHhccc--c-------cCCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchh
Confidence            6789999999999999999998876532  2       45788999999999999999999987643         22  


Q ss_pred             ---------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC----------C
Q psy13807         71 ---------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE----------N  113 (204)
Q Consensus        71 ---------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~----------~  113 (204)
                                                 ++.++++|++++++|.|+.|||+++|+++++||+++++.+++          .
T Consensus      3390 ~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~T~~~F~~~p~~~~g 3469 (3956)
T PRK12467       3390 VVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLNPVPVGVAGELYIGGVGLARGYHQRPSLTAERFVADPFSGSG 3469 (3956)
T ss_pred             EeeeEEEecccccccCCCCCCCccccCCCEEEEECCCCCCCCCCCCceEEEcchhhhhhccCCcccchhhccCCCCCCCC
Confidence                                       567889999999999999999999999999999999987765          2


Q ss_pred             CCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC
Q psy13807        114 DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT  193 (204)
Q Consensus       114 ~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~  193 (204)
                      .+||+|||++++++||+++|+||+||+||++|++|+|.|||++|.++|+|.+++|++.+. ..++.++++|+..+.....
T Consensus      3470 ~r~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rIe~~EIE~~l~~~p~V~~a~v~~~~~-~~~~~lva~v~~~~~~~~~ 3548 (3956)
T PRK12467       3470 GRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLLQHPSVREAVVLARDG-AGGKQLVAYVVPADPQGDW 3548 (3956)
T ss_pred             ceeeccchhheecCCCcEEEeccccceEeeceEeecHHHHHHHHhhCcccceEEEEEecC-CCCcEEEEEEeCCCCCccc
Confidence            358999999999999999999999999999999999999999999999999999998754 4677999999987665667


Q ss_pred             HHHHHHHHhcC
Q psy13807        194 QDDIKTYCKGK  204 (204)
Q Consensus       194 ~~~l~~~l~~~  204 (204)
                      .+.++++|+++
T Consensus      3549 ~~~l~~~l~~~ 3559 (3956)
T PRK12467       3549 RETLRDHLAAS 3559 (3956)
T ss_pred             HHHHHHHHhcc
Confidence            78888888754

>PRK06087 short chain acyl-CoA synthetase; Reviewed

Probab=99.97  E-value=6.2e-30  Score=217.50  Aligned_cols=193  Identities=34%  Similarity=0.587  Sum_probs=167.0

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.++++|+++..+++......       ..++++|.+++||+++++++.+.+.+. |.+           
T Consensus       268 ~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~-------~~~~~lr~i~~gG~~~~~~~~~~~~~~-~~~l~~~YG~TE~~  339 (547)
T PRK06087        268 CLALLEQQRCTCMLGATPFIYDLLNLLEKQP-------ADLSALRFFLCGGTTIPKKVARECQQR-GIKLLSVYGSTESS  339 (547)
T ss_pred             HHHHHHHcCCCEEeccHHHHHHHHhccccCC-------CCCCCeEEEEEcCCCCCHHHHHHHHHc-CCcEEEEecccccC
Confidence            5788999999999988887777776554333       567899999999999999998877643 221           


Q ss_pred             -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEE
Q psy13807         71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFI  124 (204)
Q Consensus        71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~  124 (204)
                                             ++.++++|+++.+++.|..|||+++|++++.||+++++.+..   .++||+|||+++
T Consensus       340 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~g~~~TGDl~~  419 (547)
T PRK06087        340 PHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPGCEGEEASRGPNVFMGYLDEPELTARALDEEGWYYSGDLCR  419 (547)
T ss_pred             CccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCcCCCcceEEEecccccccccCCHHHHHHHhCCCCCcCcCceEE
Confidence                                   567788999999999999999999999999999999887655   578999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCC-CCCCCHHHHHHHHh
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKP-GASLTQDDIKTYCK  202 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~-~~~~~~~~l~~~l~  202 (204)
                      ++++|+++++||.+|+|+++|.+++|.+||+++..+|+|.++++++.+++..++.+++++++.+ +...+.+++.++++
T Consensus       420 ~~~~g~l~i~GR~~d~i~~~G~~v~p~~iE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~~~~~~~~  498 (547)
T PRK06087        420 MDEAGYIKITGRKKDIIVRGGENISSREVEDILLQHPKIHDACVVAMPDERLGERSCAYVVLKAPHHSLTLEEVVAFFS  498 (547)
T ss_pred             ECCCCCEEEEecchhhhhcCCEEECHHHHHHHHHhCCCeeEEEEEecCCCCcCceEEEEEEECCCCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998888889999999875 44556677777654

>PTZ00342 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=4e-30  Score=224.38  Aligned_cols=183  Identities=19%  Similarity=0.275  Sum_probs=145.0

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCC---CCCCc--------------------cc-----------c-cCCCCce
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPL---TEEMP--------------------NI-----------A-EELSSPV   46 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~---~~~~~--------------------~~-----------~-~~l~~l~   46 (204)
                      +++.|++++||+++++|.+++.|.......   .....                    ..           + .-.+++|
T Consensus       385 l~~di~~~~pT~~~~VP~v~~~i~~~i~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~v~~kir~~lg~~lr  464 (746)
T PTZ00342        385 FSKDIYNSKGNILAGVPKVFNRIYTNIMTEINNLPPLKRFLVKKILSLRKSNNNGGFSKFLEGITHISSKIKDKVNPNLE  464 (746)
T ss_pred             HHHHHHHhCCcEEEchHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhCCCeE
Confidence            678899999999999999999887531000   00000                    00           0 0126899


Q ss_pred             EEEEeCCCCCHHHHHHHHHHhCCc---------------------------------ceEEEEEC-CCCCcCCCCCeeEE
Q psy13807         47 IALTAGAPCSPTLFNKIRDTFGIK---------------------------------HLIVKVVD-KKGNIVPMGMCGEV   92 (204)
Q Consensus        47 ~~~~~G~~~~~~~~~~~~~~~g~~---------------------------------~~~v~i~d-~~g~~~~~~~~Gel   92 (204)
                      .+++||+++++++.+++...+|.+                                 ++.++++| +++...+....|||
T Consensus       465 ~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~~GEl  544 (746)
T PTZ00342        465 VILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKATDTLPKGEL  544 (746)
T ss_pred             EEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccCCCCCcccccCcCCCcEEEEEecccccccCCCCCceEE
Confidence            999999999999999999877654                                 34555655 22333333457999


Q ss_pred             EEEeCcccccccCCcccccC---CCCceeccceEEEecCCeEEEEeeccceEE-eCceeeChHHHHHHHhcCCCcceEEE
Q psy13807         93 CYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIII-RGGENIIPKEIEYVLQTHPDVVEAQV  168 (204)
Q Consensus        93 ~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~-~~G~~v~~~~ie~~l~~~~~V~~~~v  168 (204)
                      +++||+++.|||++|+.++.   .+|||+|||+|++|+||+++|.||.+|+|| .+|++|+|.+||+++.++|.|.+++|
T Consensus       545 ~vrGp~v~~GY~~~pe~T~~~f~~dGW~~TGDig~~d~dG~l~i~gR~kdlIkls~Ge~I~p~eIE~~l~~~p~V~~~~V  624 (746)
T PTZ00342        545 LIKSDSIFSGYFLEKEQTKNAFTEDGYFKTGDIVQINKNGSLTFLDRSKGLVKLSQGEYIETDMLNNLYSQISFINFCVV  624 (746)
T ss_pred             EEecCcccccccCChhhhhhhcCcCCcccCCcEEEECCCCeEEEEccCCCeEEeCCCEEEchHHHHHHHhcCCCccEEEE
Confidence            99999999999999998877   489999999999999999999999999999 57999999999999999999999999


Q ss_pred             EeeeCCCCCceEEEEEEeC
Q psy13807        169 YGVPDERLGEVVVANIELK  187 (204)
Q Consensus       169 ~~~~~~~~~~~~~a~v~~~  187 (204)
                      +|..   ....++|+|++.
T Consensus       625 vG~~---~~~~~~Alvv~d  640 (746)
T PTZ00342        625 YGDD---SMDGPLAIISVD  640 (746)
T ss_pred             EccC---CccccEEEEECC
Confidence            9853   223688998875

>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1

Probab=99.97  E-value=1.9e-29  Score=212.27  Aligned_cols=194  Identities=20%  Similarity=0.184  Sum_probs=162.0

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC-Cc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG-IK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g-~~----------   70 (204)
                      +++.+++++++.+.++|++++.++.......       ..+++++.++++|+++++++.+++.+.++ ..          
T Consensus       224 ~~~~i~~~~~~~~~~~p~~~~~~l~~~~~~~-------~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~  296 (502)
T TIGR01734       224 LFEELPKTGLNVWVSTPSFVDMCLLDPNFNQ-------ENYPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEA  296 (502)
T ss_pred             HHHHHHHcCCeEEEEChhHHHHHHhcccccc-------ccCCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcc
Confidence            5788999999999999999988776543333       46789999999999999999999988763 22          


Q ss_pred             ---------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC------CCCce
Q psy13807         71 ---------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE------NDEWF  117 (204)
Q Consensus        71 ---------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~------~~~~~  117 (204)
                                                 ++.++++|+++.+++.|+.|||+++|++++.||+++++.+..      ..+||
T Consensus       297 ~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~~~~  376 (502)
T TIGR01734       297 TVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEPLPEGEKGEIVIVGPSVSKGYLNNPEKTAEAFFSHEGQPAY  376 (502)
T ss_pred             eEEEEEEEccccccccCCccccccccCCCEEEEECCCCCCCCCCCeeEEEEccccccccccCCcccchHhheeCCCcEEE
Confidence                                       456788999999999999999999999999999999887654      34699


Q ss_pred             eccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeee-CCCCCceEEEEEEeCCCCCCCH--
Q psy13807        118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVP-DERLGEVVVANIELKPGASLTQ--  194 (204)
Q Consensus       118 ~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~-~~~~~~~~~a~v~~~~~~~~~~--  194 (204)
                      +|||+|+++++ ++++.||.+|+|+++|.+|+|.+||+++.++|+|.+++++++. .....+.++++|++.+......  
T Consensus       377 ~TGDlg~~~~~-~l~i~GR~~d~i~~~G~~v~~~~IE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~~v~~~~~~~~~~~~  455 (502)
T TIGR01734       377 RTGDAGTITDG-QLFYQGRLDFQIKLHGYRIELEDIEFNLRQSSYIESAVVVPKYNKDHKVEYLIAAIVPETEDFEKEFQ  455 (502)
T ss_pred             ECCCEEEEECC-EEEEeccccCeEEECcEEeCHHHHHHHHHcCCCccEEEEEEEEcCCCCceEEEEEEEecccccccchh
Confidence            99999999976 9999999999999999999999999999999999999999976 4445678889998875433222  


Q ss_pred             --HHHHHHHhc
Q psy13807        195 --DDIKTYCKG  203 (204)
Q Consensus       195 --~~l~~~l~~  203 (204)
                        .++++.+++
T Consensus       456 ~~~~i~~~~~~  466 (502)
T TIGR01734       456 LTKAIKKELKK  466 (502)
T ss_pred             hHHHHHHHHhh
Confidence              455555543

This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.

>PRK12316 peptide synthase; Provisional

Probab=99.97  E-value=4e-30  Score=256.80  Aligned_cols=190  Identities=22%  Similarity=0.286  Sum_probs=168.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC---------Cc--
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG---------IK--   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g---------~~--   70 (204)
                      +++.++++++|++.++|++++.|++...  .       ..++++|.+++||+++++++.+++.+.++         .+  
T Consensus       738 ~~~~i~~~~vt~~~~~Ps~~~~l~~~~~--~-------~~~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~  808 (5163)
T PRK12316        738 LVELINREGVDTLHFVPSMLQAFLQDED--V-------ASCTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEA  808 (5163)
T ss_pred             HHHHHHHcCCeEEEeCHHHHHHHHhccc--c-------ccCCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChh
Confidence            6788999999999999999999886432  2       45789999999999999999999876542         22  


Q ss_pred             ------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---------CCCce
Q psy13807         71 ------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---------NDEWF  117 (204)
Q Consensus        71 ------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---------~~~~~  117 (204)
                                              ++.++|+|++++++|.|..|||+++|++++.||+++++.++.         .++||
T Consensus       809 ~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GYl~~~~~t~~~f~~~~~~~~~~~y  888 (5163)
T PRK12316        809 AIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVPVGVLGELYLAGRGLARGYHGRPGLTAERFVPSPFVAGERMY  888 (5163)
T ss_pred             eeeeeEEecccccCCCCCCccccCCCEEEEECCCCCCCCCCCceEEEecccccChhhCCChhhhhhhCCCCCCCCCCeeE
Confidence                                    678899999999999999999999999999999999987764         24699


Q ss_pred             eccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHH
Q psy13807        118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDI  197 (204)
Q Consensus       118 ~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l  197 (204)
                      +|||++++++||.++|+||.||+||++|++|+|.|||++|.++|+|.+++|++.+    ++.++|+|++.++.....+.+
T Consensus       889 ~TGDl~~~~~dG~l~~~GR~d~~ik~~G~rI~~~EIE~~l~~~p~V~~a~V~~~~----~~~lva~vv~~~~~~~~~~~l  964 (5163)
T PRK12316        889 RTGDLARYRADGVIEYAGRIDHQVKLRGLRIELGEIEARLLEHPWVREAAVLAVD----GKQLVGYVVLESEGGDWREAL  964 (5163)
T ss_pred             ecCccEEECCCCCEEeecccCCEEEEceEEcChHHHHHHHHhCCCcceEEEEEcC----CCeEEEEEEccCCCCCCHHHH
Confidence            9999999999999999999999999999999999999999999999999999885    568999999987666778889


Q ss_pred             HHHHhcC
Q psy13807        198 KTYCKGK  204 (204)
Q Consensus       198 ~~~l~~~  204 (204)
                      +++|+++
T Consensus       965 ~~~l~~~  971 (5163)
T PRK12316        965 KAHLAAS  971 (5163)
T ss_pred             HHHHHhh
Confidence            9888753

>PRK13391 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=2.1e-29  Score=212.68  Aligned_cols=196  Identities=30%  Similarity=0.492  Sum_probs=166.7

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|+++..+.+.......     ..++++++.+++||+++++++.+++.+.+|..           
T Consensus       239 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~-----~~~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~  313 (511)
T PRK13391        239 YLALIEEYGVTHTQLVPTMFSRMLKLPEEVRD-----KYDLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGL  313 (511)
T ss_pred             HHHHHHHhCCeEEEehHHHHHHHHhCchhhcc-----cCCccceeEEEEccCCCCHHHHHHHHHHcCCceeeeecccccc
Confidence            67889999999999999999988765432220     14578999999999999999999998876643           


Q ss_pred             ---------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC----CCCceeccceEEE
Q psy13807         71 ---------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE----NDEWFPSGDFFIL  125 (204)
Q Consensus        71 ---------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~----~~~~~~TGD~~~~  125 (204)
                                           ...++++|++|.+++.|+.|||+++++ ++.+|+++++.+..    +++||+|||++++
T Consensus       314 ~~~~~~~~~~~~~~~~vG~~~~g~~~i~d~~~~~~~~g~~Gel~~~g~-~~~gy~~~~~~~~~~~~~~~~w~~TGD~g~~  392 (511)
T PRK13391        314 GFTACDSEEWLAHPGTVGRAMFGDLHILDDDGAELPPGEPGTIWFEGG-RPFEYLNDPAKTAEARHPDGTWSTVGDIGYV  392 (511)
T ss_pred             ceEEecCccccccCCCcCCcccceEEEECCCCCCCCCCCceEEEEecC-cceEEcCChhHhHHhhccCCCEEecCCEEEE
Confidence                                 113678888899999999999999999 88899998887655    3489999999999


Q ss_pred             ecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCC---CHHHHHHHHh
Q psy13807        126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASL---TQDDIKTYCK  202 (204)
Q Consensus       126 ~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~---~~~~l~~~l~  202 (204)
                      +++|.+++.||.+|++|++|.++++.+||+++.++|.|.+++|++.+++..++.+++++++.++...   ..++++++|+
T Consensus       393 ~~~g~l~~~gR~~~~i~~~G~~v~~~eie~~l~~~~~v~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~  472 (511)
T PRK13391        393 DEDGYLYLTDRAAFMIISGGVNIYPQEAENLLITHPKVADAAVFGVPNEDLGEEVKAVVQPVDGVDPGPALAAELIAFCR  472 (511)
T ss_pred             CCCccEEEeccCCCEEEeCCEEECHHHHHHHHHhCCCcceEEEEecCCcccCceeEEEEEECCCCCcccchHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988888899999988664332   2467777776


Q ss_pred             c
Q psy13807        203 G  203 (204)
Q Consensus       203 ~  203 (204)
                      +
T Consensus       473 ~  473 (511)
T PRK13391        473 Q  473 (511)
T ss_pred             h
Confidence            5

>PRK07867 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2.3e-29  Score=213.39  Aligned_cols=193  Identities=23%  Similarity=0.332  Sum_probs=162.8

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|+.+..++...+...       ...+++| +++||+++++.+ .++.+.+|.+           
T Consensus       233 ~~~~i~~~~vt~~~~~p~~~~~ll~~~~~~~-------~~~~~lr-~~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~  303 (529)
T PRK07867        233 FLPDVRRYGATYANYVGKPLSYVLATPERPD-------DADNPLR-IVYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGG  303 (529)
T ss_pred             HHHHHHHhCCeEEeccHHHHHHHHhCCCccc-------ccccceE-EEecCCCChHHH-HHHHHHhCCcEEEeecccccc
Confidence            5788999999999999999998887654322       2345677 456888887765 5666666643           


Q ss_pred             -----------------ceEEEEECC-CCCcCCCCC------------eeEEEE-EeCcccccccCCcccccC--CCCce
Q psy13807         71 -----------------HLIVKVVDK-KGNIVPMGM------------CGEVCY-RGYNVMLGYYGEENKILE--NDEWF  117 (204)
Q Consensus        71 -----------------~~~v~i~d~-~g~~~~~~~------------~Gel~v-~~~~~~~~y~~~~~~~~~--~~~~~  117 (204)
                                       -..++++|+ ++.+++.|.            .|||++ ++++++.||+++++.+..  .++||
T Consensus       304 ~~~~~~~~~~~~~~g~~~~~~~i~~~~~~~~~~~g~~~~~~~~~~~~~~Gel~i~~g~~~~~gy~~~~~~~~~~~~~g~~  383 (529)
T PRK07867        304 VAITRTPDTPPGALGPLPPGVAIVDPDTGTECPPAEDADGRLLNADEAIGELVNTAGPGGFEGYYNDPEADAERMRGGVY  383 (529)
T ss_pred             cccccCCCCCCCCcCCCCCCEEEEECCCCCCCCCCccccccccccCCcceEEEEecCCcccccccCChHhhhhhhcCCeE
Confidence                             011566664 578888888            899999 999999999999987765  68999


Q ss_pred             eccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHH
Q psy13807        118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDI  197 (204)
Q Consensus       118 ~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l  197 (204)
                      +|||+++++++|++++.||.||+++++|.+|+|.+||++|.++|+|.+++|++.+++..++.+++++++.++...+.+++
T Consensus       384 ~TGD~~~~~~~g~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~~~V~g~~~~~~g~~~~a~vv~~~~~~~~~~~l  463 (529)
T PRK07867        384 WSGDLAYRDADGYAYFAGRLGDWMRVDGENLGTAPIERILLRYPDATEVAVYAVPDPVVGDQVMAALVLAPGAKFDPDAF  463 (529)
T ss_pred             eeccEEEEeCCCcEEEeccccCeEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCCCCCeeEEEEEEECCCCCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999888999999999988877888999


Q ss_pred             HHHHhc
Q psy13807        198 KTYCKG  203 (204)
Q Consensus       198 ~~~l~~  203 (204)
                      +++|++
T Consensus       464 ~~~~~~  469 (529)
T PRK07867        464 AEFLAA  469 (529)
T ss_pred             HHHHHh
Confidence            888864

>PRK12316 peptide synthase; Provisional

Probab=99.97  E-value=6.6e-30  Score=255.28  Aligned_cols=194  Identities=20%  Similarity=0.253  Sum_probs=170.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC---------Cc--
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG---------IK--   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g---------~~--   70 (204)
                      +++.|+++++|++.++|++++.+.+......        ...+||.+++||+++++++.++|.+.++         .+  
T Consensus      2228 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~--------~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 2299 (5163)
T PRK12316       2228 LYDEMERHGVTILDFPPVYLQQLAEHAERDG--------RPPAVRVYCFGGEAVPAASLRLAWEALRPVYLFNGYGPTEA 2299 (5163)
T ss_pred             HHHHHHHcCCeEEEcChHHHHHHHhhhhccc--------CCcceeEEEEecccCCHHHHHHHHHhCCCcEEEECccchhh
Confidence            6789999999999999999999887543222        3458999999999999999999986532         21  


Q ss_pred             ---------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC----------C
Q psy13807         71 ---------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE----------N  113 (204)
Q Consensus        71 ---------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~----------~  113 (204)
                                                 ++.++|+|++++++|.|..|||+|+|+++++||+++|+.+..          .
T Consensus      2300 ~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~g~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~~~~~~~ 2379 (5163)
T PRK12316       2300 VVTPLLWKCRPQDPCGAAYVPIGRALGNRRAYILDADLNLLAPGMAGELYLGGEGLARGYLNRPGLTAERFVPDPFSASG 2379 (5163)
T ss_pred             eeeeeeeecccccccCCCcCCcccccCCCEEEEECCCCCCCCCCCeeEEEecchhhcccccCChhhhhhhccCCCCCCCC
Confidence                                       456788999999999999999999999999999999987765          2


Q ss_pred             CCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC
Q psy13807        114 DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT  193 (204)
Q Consensus       114 ~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~  193 (204)
                      ++||+|||++++++||.++|+||+||+||++|+||+|.|||+.|.++|+|.+++|++.++. .++.++|+|++.++...+
T Consensus      2380 ~~~yrTGDl~~~~~dG~l~~~GR~d~~iki~G~rie~~eIE~~l~~~~~v~~a~v~~~~~~-~~~~l~a~v~~~~~~~~~ 2458 (5163)
T PRK12316       2380 ERLYRTGDLARYRADGVVEYLGRIDHQVKIRGFRIELGEIEARLQAHPAVREAVVVAQDGA-SGKQLVAYVVPDDAAEDL 2458 (5163)
T ss_pred             CeeEecccEEEEcCCCcEEEecCCCCeEEEcCccCChHHHHHHHhhCcccceEEEEEEecC-CCeEEEEEEEecCCCccC
Confidence            3699999999999999999999999999999999999999999999999999999998765 678999999998877778


Q ss_pred             HHHHHHHHhcC
Q psy13807        194 QDDIKTYCKGK  204 (204)
Q Consensus       194 ~~~l~~~l~~~  204 (204)
                      .++++++|+++
T Consensus      2459 ~~~l~~~l~~~ 2469 (5163)
T PRK12316       2459 LAELRAWLAAR 2469 (5163)
T ss_pred             HHHHHHHHHhh
Confidence            88999888753

>PRK06178 acyl-CoA synthetase; Validated

Probab=99.97  E-value=2.8e-29  Score=214.36  Aligned_cols=196  Identities=27%  Similarity=0.450  Sum_probs=168.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEE--eCCCCCHHHHHHHHHHhCCc---------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALT--AGAPCSPTLFNKIRDTFGIK---------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~--~G~~~~~~~~~~~~~~~g~~---------   70 (204)
                      +++.++++++|.+.++|..+..+++......       ..+++++.+..  .|+++++++.+++.+.+|..         
T Consensus       291 ~~~~i~~~~~t~~~~~~~~~~~l~~~~~~~~-------~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~t  363 (567)
T PRK06178        291 FMAAVERYRVTRTVMLVDNAVELMDHPRFAE-------YDLSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMT  363 (567)
T ss_pred             HHHHHHHhCCeEEeccHHHHHHHHhCCCCCC-------CCcchheeeeeccccccCCHHHHHHHHHHhCCcccccccccc
Confidence            6788999999999999999998887654333       45677877643  45889999998887654421         


Q ss_pred             -------------------------------ceEEEEEC-CCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCc
Q psy13807         71 -------------------------------HLIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEW  116 (204)
Q Consensus        71 -------------------------------~~~v~i~d-~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~  116 (204)
                                                     ++.++++| +++++++.|+.|||+++|++++.||+++++.+..  .+||
T Consensus       364 E~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~~~~~~~~~g~~Gel~v~g~~v~~gY~~~~~~~~~~~~dg~  443 (567)
T PRK06178        364 ETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDFETGELLPLGAEGEIVVRTPSLLKGYWNKPEATAEALRDGW  443 (567)
T ss_pred             cccccceeccccccCccccccCCcccccccCCcEEEEEcCCCCCcCCCCCceEEEEECCcccccccCChhhhhhcccCCc
Confidence                                           34567888 4599999999999999999999999999887765  5789


Q ss_pred             eeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHH
Q psy13807        117 FPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDD  196 (204)
Q Consensus       117 ~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~  196 (204)
                      |+|||+++++++|++++.||.+|+++++|.+++|.+||+++.++++|.+++|++.+++..++.++++|++.++...+.++
T Consensus       444 ~~TGDl~~~~~~g~l~i~GR~~d~i~~~G~~i~~~eiE~~l~~~~~v~~~~v~~~~~~~~g~~~~~~v~~~~~~~~~~~~  523 (567)
T PRK06178        444 LHTGDIGKIDEQGFLHYLGRRKEMLKVNGMSVFPSEVEALLGQHPAVLGSAVVGRPDPDKGQVPVAFVQLKPGADLTAAA  523 (567)
T ss_pred             eeecceEEEecCCeEEEEecccccEEECCEEECHHHHHHHHHhCCCeeEEEEEcCcCcccCcceEEEEEeCCCCcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999998887788999999998776778889


Q ss_pred             HHHHHhcC
Q psy13807        197 IKTYCKGK  204 (204)
Q Consensus       197 l~~~l~~~  204 (204)
                      ++++++++
T Consensus       524 l~~~~~~~  531 (567)
T PRK06178        524 LQAWCREN  531 (567)
T ss_pred             HHHHHHhc
Confidence            99888763

>PRK06164 acyl-CoA synthetase; Validated

Probab=99.97  E-value=3e-29  Score=212.95  Aligned_cols=194  Identities=25%  Similarity=0.352  Sum_probs=162.5

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeC-CCCCHHHHHHHHHH-------hCCc---
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAG-APCSPTLFNKIRDT-------FGIK---   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G-~~~~~~~~~~~~~~-------~g~~---   70 (204)
                      +++.++++++|.++++|++++.+.+.. ...       ..+++++.+.++| .+.+..+.+++.+.       ||.+   
T Consensus       261 ~~~~l~~~~~t~~~~~p~~l~~l~~~~-~~~-------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  332 (540)
T PRK06164        261 TARALRRHRVTHTFGNDEMLRRILDTA-GER-------ADFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQ  332 (540)
T ss_pred             HHHHHHHhCCeeecCCHHHHHHHHHhh-ccc-------CCCcceeeeeeccCCcchHHHHHHHhhcCCceecceeecccc
Confidence            678999999999999999999998872 222       5678898886665 55666676665532       1111   


Q ss_pred             -------------------------ceEEEEECC-CCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccc
Q psy13807         71 -------------------------HLIVKVVDK-KGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGD  121 (204)
Q Consensus        71 -------------------------~~~v~i~d~-~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD  121 (204)
                                               ++.++++|+ ++++++.|+.|||+++|++++.||+++++.+..   .++||+|||
T Consensus       333 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~~~~~TGD  412 (540)
T PRK06164        333 ALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGALLPDGESGEIEIRAPSLMRGYLDNPDATARALTDDGYFRTGD  412 (540)
T ss_pred             ceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcCCCCCCeeEEEEecccccccccCCchhhhhcccCCCceecCC
Confidence                                     456778885 488999999999999999999999999988766   578999999


Q ss_pred             eEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHH
Q psy13807        122 FFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYC  201 (204)
Q Consensus       122 ~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l  201 (204)
                      +++++++|.+++.||.+|++|++|.+++|.+||+.+..+++|.+++|++.+. ..+..+++++++.++...+.+++.++|
T Consensus       413 l~~~~~~g~l~~~GR~~~~i~~~G~~i~p~eIE~~l~~~~~v~~~~v~~~~~-~~~~~~~~~vv~~~~~~~~~~~l~~~~  491 (540)
T PRK06164        413 LGYTRGDGQFVYQTRMGDSLRLGGFLVNPAEIEHALEALPGVAAAQVVGATR-DGKTVPVAFVIPTDGASPDEAGLMAAC  491 (540)
T ss_pred             eEEEcCCceEEEEeecCCeEEECCEEcCHHHHHHHHHhCCCceeEEEEecCC-CCceeEEEEEEeCCCCCCCHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999874 455689999998877667888888888


Q ss_pred             hcC
Q psy13807        202 KGK  204 (204)
Q Consensus       202 ~~~  204 (204)
                      +++
T Consensus       492 ~~~  494 (540)
T PRK06164        492 REA  494 (540)
T ss_pred             Hhh
Confidence            753

>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.97  E-value=2.5e-29  Score=210.57  Aligned_cols=190  Identities=35%  Similarity=0.562  Sum_probs=163.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|++++.|........        ...++|.+++||+++++.+.+++.+. |.+           
T Consensus       221 ~~~~i~~~~~t~l~~~P~~~~~l~~~~~~~~--------~~~~lr~~~~~g~~~~~~~~~~~~~~-~~~~~~~YG~tE~~  291 (483)
T PRK03640        221 INKLLQTGGVTIISVVSTMLQRLLERLGEGT--------YPSSFRCMLLGGGPAPKPLLEQCKEK-GIPVYQSYGMTETA  291 (483)
T ss_pred             HHHHHHHhCCcEEEeHHHHHHHHHhCcCccc--------cCCcceEEEEcCCCCCHHHHHHHHHh-CCCeeeeeccCccc
Confidence            6889999999999999999999886543212        34689999999999999999887753 322           


Q ss_pred             -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEEE
Q psy13807         71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFIL  125 (204)
Q Consensus        71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~  125 (204)
                                             ++.+++.|+ +++++.|+.|||+++|++++.||+++++.+..  .++||+|||++++
T Consensus       292 ~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~-~~~~~~g~~Gel~v~g~~~~~gy~~~~~~~~~~~~~~~~~tGDl~~~  370 (483)
T PRK03640        292 SQIVTLSPEDALTKLGSAGKPLFPCELKIEKD-GVVVPPFEEGEIVVKGPNVTKGYLNREDATRETFQDGWFKTGDIGYL  370 (483)
T ss_pred             ccccccCcccccccCCCcccccCCcEEEEecC-CCcCCCCCceEEEEECcchhhhhcCCHHHHHHHHhcCCeeccceEEE
Confidence                                   456667765 58899999999999999999999999887765  6889999999999


Q ss_pred             ecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       126 ~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      ++||.+++.||++|++|++|.++++.+||+.+..+++|.++++++.+++..+..++++++..  ...+.++++++|++
T Consensus       371 ~~~g~l~~~GR~~~~i~~~G~~v~~~~ie~~i~~~~~v~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~  446 (483)
T PRK03640        371 DEEGFLYVLDRRSDLIISGGENIYPAEIEEVLLSHPGVAEAGVVGVPDDKWGQVPVAFVVKS--GEVTEEELRHFCEE  446 (483)
T ss_pred             cCCCCEEEeecccCeEEeCCEEECHHHHHHHHHhCCCeeEEEEEeCCCcccCCceEEEEEeC--CCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999998877777888888854  45778888888765

>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase

Probab=99.97  E-value=1.8e-29  Score=234.07  Aligned_cols=176  Identities=23%  Similarity=0.231  Sum_probs=152.5

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh---------CCc--
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF---------GIK--   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~---------g~~--   70 (204)
                      +++.|+++++|++.++|++++.|....   .       ..++++|.+++||+++++.+.+++.+.+         |.+  
T Consensus       498 l~~~i~~~~vt~~~~~Ps~~~~l~~~~---~-------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~  567 (1389)
T TIGR03443       498 LAEWMAKYGATVTHLTPAMGQLLSAQA---T-------TPIPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTET  567 (1389)
T ss_pred             HHHHHHHhCCeEEEeCHHHHHHHHhcc---c-------ccCCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCcc
Confidence            678899999999999999999886532   1       3578999999999999999988877643         221  


Q ss_pred             ---------------------------------ceEEEEECCC--CCcCCCCCeeEEEEEeCcccccccCCcccccC---
Q psy13807         71 ---------------------------------HLIVKVVDKK--GNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---  112 (204)
Q Consensus        71 ---------------------------------~~~v~i~d~~--g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---  112 (204)
                                                       ++.++|+|++  +.++|.|..|||+++|++++.||+++|+.+..   
T Consensus       568 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~~G~~GEL~i~G~~v~~GY~~~p~~t~~~f~  647 (1389)
T TIGR03443       568 QRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVVNRNDRTQTCGVGEVGEIYVRAGGLAEGYLGLPELNAEKFV  647 (1389)
T ss_pred             ceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEECCccCCCcCCCCCceEEEecccccchhcCCChhHhhhhcc
Confidence                                             3445778765  57899999999999999999999999876643   


Q ss_pred             ----------------------------CCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcc
Q psy13807        113 ----------------------------NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVV  164 (204)
Q Consensus       113 ----------------------------~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~  164 (204)
                                                  .++||+|||++++++||.++|+||.||+||++|++|+|.|||++|.++|.|.
T Consensus       648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~TGDlg~~~~dG~l~~~GR~dd~Iki~G~rI~p~eIE~~l~~~p~V~  727 (1389)
T TIGR03443       648 NNWFVDPSHWIDLDKENNKPEREFWLGPRDRLYRTGDLGRYLPDGNVECCGRADDQVKIRGFRIELGEIDTHLSQHPLVR  727 (1389)
T ss_pred             CCcccCcccccccccccccccccccCCCccceeecCCceeEcCCCCEEEecccCCEEEeCcEEecHHHHHHHHHhCcchh
Confidence                                        2579999999999999999999999999999999999999999999999999


Q ss_pred             eEEEEeeeCCCCCceEEEEEEeC
Q psy13807        165 EAQVYGVPDERLGEVVVANIELK  187 (204)
Q Consensus       165 ~~~v~~~~~~~~~~~~~a~v~~~  187 (204)
                      +++|++.++...+..+++++++.
T Consensus       728 ~a~v~~~~~~~~~~~lva~vv~~  750 (1389)
T TIGR03443       728 ENVTLVRRDKDEEPTLVSYIVPQ  750 (1389)
T ss_pred             eeEEEEeeCCCCCeEEEEEEecc
Confidence            99999888877778999999876

Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.

>PRK12476 putative fatty-acid--CoA ligase; Provisional

Probab=99.97  E-value=1.1e-29  Score=218.72  Aligned_cols=196  Identities=23%  Similarity=0.371  Sum_probs=156.2

Q ss_pred             HhHHH--HHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh---CCc------
Q psy13807          2 ISRHI--VKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF---GIK------   70 (204)
Q Consensus         2 ~~~~i--~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~---g~~------   70 (204)
                      |++.+  ++++++.+..+|+++..++........   ....+++++| +++||+++++++.+++.+.|   |.+      
T Consensus       278 ~~~~i~~~~~~~t~~~~~P~~~~~l~~~~~~~~~---~~~~~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~  353 (612)
T PRK12476        278 WIKALSEGSRTGRVVTAAPNFAYEWAAQRGLPAE---GDDIDLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKP  353 (612)
T ss_pred             HHHHHhhhccCCeEEEeCCcHHHHHHHHhcChhh---hcCcchhHhe-EEecccCCCHHHHHHHHHHHHhcCCCcccccc
Confidence            56777  458999999999998877764211100   0014678999 99999999999999988766   211      


Q ss_pred             --------------------------------------------------------ceEEEEECCC-CCcCCCCCeeEEE
Q psy13807         71 --------------------------------------------------------HLIVKVVDKK-GNIVPMGMCGEVC   93 (204)
Q Consensus        71 --------------------------------------------------------~~~v~i~d~~-g~~~~~~~~Gel~   93 (204)
                                                                              ++.++|+|++ |+++|.|+.|||+
T Consensus       354 ~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~  433 (612)
T PRK12476        354 SYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAADAPNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIW  433 (612)
T ss_pred             ccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCCCCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEE
Confidence                                                                    2345678888 9999999999999


Q ss_pred             EEeCcccccccCCcccccC---------------------CCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHH
Q psy13807         94 YRGYNVMLGYYGEENKILE---------------------NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKE  152 (204)
Q Consensus        94 v~~~~~~~~y~~~~~~~~~---------------------~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~  152 (204)
                      ++|++++.|||++++.+..                     .++||+|||+|++ +||+++|.||+||+||++|++|+|.+
T Consensus       434 v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~g~~~~~~~~~~~w~~TGDlg~~-~dG~l~i~GR~~d~I~~~G~~I~p~e  512 (612)
T PRK12476        434 LHGDNIGRGYWGRPEETERTFGAKLQSRLAEGSHADGAADDGTWLRTGDLGVY-LDGELYITGRIADLIVIDGRNHYPQD  512 (612)
T ss_pred             EcCCcccccccCChHHHHHHHhhhhccccccccccccccCCCCeeecccccee-ECCEEEEEeccCcEEEECCcccCHHH
Confidence            9999999999999876643                     1359999999998 49999999999999999999999999


Q ss_pred             HHHHHhc-CCCcce--EEEEeeeCCCCCceEEEEEEeCCCCC-CCHHHHHHHHhc
Q psy13807        153 IEYVLQT-HPDVVE--AQVYGVPDERLGEVVVANIELKPGAS-LTQDDIKTYCKG  203 (204)
Q Consensus       153 ie~~l~~-~~~V~~--~~v~~~~~~~~~~~~~a~v~~~~~~~-~~~~~l~~~l~~  203 (204)
                      ||+++.+ +|.|.+  +++++++++. ++.++++|++.++.. .+.++|.+++++
T Consensus       513 IE~~l~~~~p~V~~~~v~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~~  566 (612)
T PRK12476        513 IEATVAEASPMVRRGYVTAFTVPAED-NERLVIVAERAAGTSRADPAPAIDAIRA  566 (612)
T ss_pred             HHHHHHHhcccccCCcEEEEEecCCC-cceEEEEEEecCCcccccHHHHHHHHHH
Confidence            9999985 799999  7778887776 788999999887643 466666665553

>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated

Probab=99.97  E-value=2.4e-29  Score=213.10  Aligned_cols=190  Identities=25%  Similarity=0.313  Sum_probs=149.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCC-CCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHH---hCC--------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQP-LTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDT---FGI--------   69 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~-~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~---~g~--------   69 (204)
                      +++.++++++|.+...|.++..+.+.... ..       ..++++|.+++||+++++++.++|.+.   +|.        
T Consensus       237 ~~~~i~~~~~t~~~~p~~~~~~l~~~~~~~~~-------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~  309 (525)
T PRK05851        237 WLSWLSDSRATLTAAPNFAYNLIGKYARRVSD-------VDLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPS  309 (525)
T ss_pred             HHHHHHHhCCeEEeCCcHHHHHHHHhhccccC-------CCHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccc
Confidence            67889999999886666555555443221 12       457899999999999999998887653   221        


Q ss_pred             ---c---------------------------------------ceEEEEECCCC-CcCCCCCeeEEEEEeCcccccccCC
Q psy13807         70 ---K---------------------------------------HLIVKVVDKKG-NIVPMGMCGEVCYRGYNVMLGYYGE  106 (204)
Q Consensus        70 ---~---------------------------------------~~~v~i~d~~g-~~~~~~~~Gel~v~~~~~~~~y~~~  106 (204)
                         +                                       ++.++++|+++ .+++.|+.|||+++|++++.|||++
T Consensus       310 YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~~~~GY~~~  389 (525)
T PRK05851        310 YGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGNPIPGMEVRISPGDGAAGVAGREIGEIEIRGASMMSGYLGQ  389 (525)
T ss_pred             cchhhhceEEEecCCCCCceeeeeccccCcccceeeeecCCCCCcEEEEECCCCCccCCCCCeEEEEEecCchhhccccC
Confidence               1                                       34567777775 4688999999999999999999998


Q ss_pred             cccccCCCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEe
Q psy13807        107 ENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL  186 (204)
Q Consensus       107 ~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~  186 (204)
                      ++.+  .++||+|||+++++ +|+++|+||.||+||++|++|+|.+||++|.++|+|.+++|++++++..++.+.++|+.
T Consensus       390 ~~~~--~~~~~~TGDl~~~~-~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~vv~~~~~~~~~~~~~~v~~  466 (525)
T PRK05851        390 APID--PDDWFPTGDLGYLV-DGGLVVCGRAKELITVAGRNIFPTEIERVAAQVRGVREGAVVAVGTGEGSARPGLVIAA  466 (525)
T ss_pred             CccC--CCCceeccceEEEE-CCEEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCcccceEEEEEecCCCCceeEEEEE
Confidence            8654  47899999999996 79999999999999999999999999999999999999999999987777777777665


Q ss_pred             CCCCCCCHHHHHHHHh
Q psy13807        187 KPGASLTQDDIKTYCK  202 (204)
Q Consensus       187 ~~~~~~~~~~l~~~l~  202 (204)
                      .. ...+.+++++.|+
T Consensus       467 ~~-~~~~~~~~~~~~~  481 (525)
T PRK05851        467 EF-RGPDEAGARSEVV  481 (525)
T ss_pred             Ee-cCcchHHHHHHHH
Confidence            32 1233444444443

>PRK05620 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.97  E-value=6e-29  Score=212.79  Aligned_cols=194  Identities=26%  Similarity=0.446  Sum_probs=163.0

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.++++|+++..++.......       ....++|.+++||+++++.+.+++.+.+|.+           
T Consensus       264 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~  336 (576)
T PRK05620        264 LAKIIATAMPRVAHGVPTLWIQLMVHYLKNP-------PERMSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETS  336 (576)
T ss_pred             HHHHHHHhcCceeeecCHHHHHHHHHhhccC-------cccCceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccc
Confidence            6789999999999999999998876543222       3446899999999999999999998776543           


Q ss_pred             -----------------------------ceEEEEECCCCCcCC--CCCeeEEEEEeCcccccccCCcccc---------
Q psy13807         71 -----------------------------HLIVKVVDKKGNIVP--MGMCGEVCYRGYNVMLGYYGEENKI---------  110 (204)
Q Consensus        71 -----------------------------~~~v~i~d~~g~~~~--~~~~Gel~v~~~~~~~~y~~~~~~~---------  110 (204)
                                                   ++.++++|+ |.+++  .+..|||+++|+.++.|||++++.+         
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~-g~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~t~~~~~~~f~  415 (576)
T PRK05620        337 PVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVND-GQVMESTDRNEGEIQVRGNWVTASYYHSPTEEGGGAASTFR  415 (576)
T ss_pred             cceeeeccCCccccccccccccccCCcCCceeEEEecC-CccccCCCCCceEEEEEcCcccccccCCccccccccccccc
Confidence                                         234456665 66554  4678999999999999999998766         


Q ss_pred             -------c---CCCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceE
Q psy13807        111 -------L---ENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVV  180 (204)
Q Consensus       111 -------~---~~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~  180 (204)
                             .   ..++||+|||++++++||.+++.||.+|+|+++|.+|+|.+||+++.++|.|.+++|++.+++..++.+
T Consensus       416 ~~~~~~~~~~~~~~g~~~TGD~~~~~~dg~l~~~GR~~d~i~~~G~~i~~~eIE~~l~~~p~v~~~~vv~~~~~~~g~~~  495 (576)
T PRK05620        416 GEDVEDANDRFTADGWLRTGDVGSVTRDGFLTIHDRARDVIRSGGEWIYSAQLENYIMAAPEVVECAVIGYPDDKWGERP  495 (576)
T ss_pred             cccchhhhcccccCCcEecCceEEEcCCceEEEEechhhhhhcCCEEEcHHHHHHHHhcCCCceEEEEEeccCCCcCcee
Confidence                   1   146899999999999999999999999999999999999999999999999999999999998888899


Q ss_pred             EEEEEeCCCCCC---CHHHHHHHHhc
Q psy13807        181 VANIELKPGASL---TQDDIKTYCKG  203 (204)
Q Consensus       181 ~a~v~~~~~~~~---~~~~l~~~l~~  203 (204)
                      ++++++.++...   +.++++++|++
T Consensus       496 ~a~v~~~~~~~~~~~~~~~l~~~l~~  521 (576)
T PRK05620        496 LAVTVLAPGIEPTRETAERLRDQLRD  521 (576)
T ss_pred             EEEEEecCCCCcccccHHHHHHHHHh
Confidence            999998876443   46788888775

>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional

Probab=99.97  E-value=1.2e-28  Score=207.29  Aligned_cols=194  Identities=23%  Similarity=0.202  Sum_probs=163.0

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC-Cc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG-IK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g-~~----------   70 (204)
                      +++.++++++|.+.++|++++.+........       ..+++++.++++|+++++.+.+++.+.++ ..          
T Consensus       226 ~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~-------~~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~  298 (503)
T PRK04813        226 LFETLPQLPINVWVSTPSFADMCLLDPSFNE-------EHLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEA  298 (503)
T ss_pred             HHHHHHHcCCeEEEeChHHHHHHHHhhccCc-------ccCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchh
Confidence            5788999999999999999988766544333       56789999999999999999999998873 21          


Q ss_pred             ---------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC------CCCce
Q psy13807         71 ---------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE------NDEWF  117 (204)
Q Consensus        71 ---------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~------~~~~~  117 (204)
                                                 ++.++++|++|.+++.|..|||++++++++.||+++++.+..      ..+||
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~g~~~~  378 (503)
T PRK04813        299 TVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGTKLPDGEQGEIVISGPSVSKGYLNNPEKTAEAFFTFDGQPAY  378 (503)
T ss_pred             eeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCCCCCCCCceEEEEeccccccccCCChhHhHHhhccCCCceeE
Confidence                                       455668888899999999999999999999999999876654      23599


Q ss_pred             eccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC----
Q psy13807        118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT----  193 (204)
Q Consensus       118 ~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~----  193 (204)
                      +|||++++ ++|++++.||.+|+++++|.+++|.+||+++..+|+|.+++|++.++...++.+++++++.++....    
T Consensus       379 ~tGD~~~~-~~g~~~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  457 (503)
T PRK04813        379 HTGDAGYL-EDGLLFYQGRIDFQIKLNGYRIELEEIEQNLRQSSYVESAVVVPYNKDHKVQYLIAYVVPKEEDFEREFEL  457 (503)
T ss_pred             ECCceEEe-eCCeEEEeccccceEEECcEEeCHHHHHHHHHhCCCcceEEEEEeeCCCCccEEEEEEEeccccccccchh
Confidence            99999999 9999999999999999999999999999999999999999999987766677899999887642211    


Q ss_pred             HHHHHHHHhc
Q psy13807        194 QDDIKTYCKG  203 (204)
Q Consensus       194 ~~~l~~~l~~  203 (204)
                      .+++++++++
T Consensus       458 ~~~l~~~~~~  467 (503)
T PRK04813        458 TKAIKKELKE  467 (503)
T ss_pred             HHHHHHHHHh
Confidence            1346666653

>PLN02479 acetate-CoA ligase

Probab=99.97  E-value=8.1e-29  Score=211.63  Aligned_cols=196  Identities=36%  Similarity=0.567  Sum_probs=161.7

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHH-------hCCcc---
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDT-------FGIKH---   71 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~-------~g~~~---   71 (204)
                      +++.++++++|++.++|+++..+.+......      ...+++++.++++|+++++.+.+++.+.       ||.+.   
T Consensus       275 ~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~------~~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~yG~tE~~~  348 (567)
T PLN02479        275 IYSAIANYGVTHFCAAPVVLNTIVNAPKSET------ILPLPRVVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYG  348 (567)
T ss_pred             HHHHHHHcCCeEEEecHHHHHHHHhhhhhcc------cccccceeEEEEcCCCCCHHHHHHHHhcCCceecccccccccc
Confidence            6789999999999999999999887643222      0256889999999999999999988753       22110   


Q ss_pred             --------------------------------e-EEEEECC-CCCcCCCC--CeeEEEEEeCcccccccCCcccccC--C
Q psy13807         72 --------------------------------L-IVKVVDK-KGNIVPMG--MCGEVCYRGYNVMLGYYGEENKILE--N  113 (204)
Q Consensus        72 --------------------------------~-~v~i~d~-~g~~~~~~--~~Gel~v~~~~~~~~y~~~~~~~~~--~  113 (204)
                                                      + .++++|+ ++.+++.+  +.|||+++|++++.|||++++.+..  .
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~d~~~~~~~~~~g~~~GEl~v~g~~~~~GY~~~~~~t~~~~~  428 (567)
T PLN02479        349 PSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVVDTKTMKPVPADGKTMGEIVMRGNMVMKGYLKNPKANEEAFA  428 (567)
T ss_pred             cccceeccccccccCcccccccccccCCCcCCcCceeEEcCCCCcccCCCCCCceEEEEeccchhhhhhcCcccccchhc
Confidence                                            0 1566674 47777754  6799999999999999999988876  6


Q ss_pred             CCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCC--
Q psy13807        114 DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS--  191 (204)
Q Consensus       114 ~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~--  191 (204)
                      ++||+|||+++++++|++++.||.||++|++|.+|+|.+||.++..+|.|.+++|++.+++..++.+++++++.++..  
T Consensus       429 ~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~  508 (567)
T PLN02479        429 NGWFHSGDLGVKHPDGYIEIKDRSKDIIISGGENISSLEVENVVYTHPAVLEASVVARPDERWGESPCAFVTLKPGVDKS  508 (567)
T ss_pred             CCceecceeEEEcCCccEEEeccccceEEeCCEEEcHHHHHHHHHhCcccceeeEEeccchhcCceeEEEEEecCccccc
Confidence            899999999999999999999999999999999999999999999999999999999988777789999999876532  


Q ss_pred             ---CCHHHHHHHHhc
Q psy13807        192 ---LTQDDIKTYCKG  203 (204)
Q Consensus       192 ---~~~~~l~~~l~~  203 (204)
                         ...++|++++++
T Consensus       509 ~~~~~~~~l~~~~~~  523 (567)
T PLN02479        509 DEAALAEDIMKFCRE  523 (567)
T ss_pred             chhhhHHHHHHHHHh
Confidence               224566666654

>PRK12467 peptide synthase; Provisional

Probab=99.97  E-value=6.8e-29  Score=244.94  Aligned_cols=193  Identities=22%  Similarity=0.241  Sum_probs=164.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC---------c--
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI---------K--   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~---------~--   70 (204)
                      +++.|+++++|++.++|++++.|.+... ..       ..++++|.+++||+++++++.++|.+.++.         +  
T Consensus      1801 l~~~i~~~~vt~~~~~Ps~~~~l~~~~~-~~-------~~~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 1872 (3956)
T PRK12467       1801 LIQLIERQQVTTLHFVPSMLQQLLQMDE-QV-------EHPLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTET 1872 (3956)
T ss_pred             HHHHHHHcCCeEEECCHHHHHHHHhhcc-cc-------ccCCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcC
Confidence            6789999999999999999999887522 12       357899999999999999999998776532         1  


Q ss_pred             ---------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC----------C
Q psy13807         71 ---------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE----------N  113 (204)
Q Consensus        71 ---------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~----------~  113 (204)
                                                 ++.++++|++++++|.|..|||+++|+++++||+++++.++.          .
T Consensus      1873 t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~vp~G~~GEl~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~ 1952 (3956)
T PRK12467       1873 AVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNPVPIGVAGELYLGGVGLARGYLNRPALTAERFVADPFGTVG 1952 (3956)
T ss_pred             EEeEEEEeccccccccCCCCCcccccCCCEEEEECCCCCCCCCCCceEEEeccccccccccCChhhhhhhCcCCCCCCCC
Confidence                                       456788898899999999999999999999999999987764          2


Q ss_pred             CCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCC-
Q psy13807        114 DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASL-  192 (204)
Q Consensus       114 ~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~-  192 (204)
                      .+||+|||++++++||.++|+||+||+||++|++|+|.|||+.|.++|+|.+++|++.+ ...+..++++|+..++... 
T Consensus      1953 ~r~yrTGDl~~~~~dG~l~~~GR~D~qVki~G~rIel~eIE~~l~~~p~V~~a~vv~~~-~~~~~~lva~vv~~~~~~~~ 2031 (3956)
T PRK12467       1953 SRLYRTGDLARYRADGVIEYLGRIDHQVKIRGFRIELGEIEARLREQGGVREAVVIAQD-GANGKQLVAYVVPTDPGLVD 2031 (3956)
T ss_pred             ccceeccceEEECCCCCEEEecccCceEEeCeEEechHHHHHHHHhCCCcceEEEEEec-CCCCcEEEEEEEecCccccc
Confidence            35999999999999999999999999999999999999999999999999999999986 4456789999998654222 


Q ss_pred             -------CHHHHHHHHhc
Q psy13807        193 -------TQDDIKTYCKG  203 (204)
Q Consensus       193 -------~~~~l~~~l~~  203 (204)
                             ..++++++|++
T Consensus      2032 ~~~~~~~~~~~l~~~l~~ 2049 (3956)
T PRK12467       2032 DDEAQVALRAILKNHLKA 2049 (3956)
T ss_pred             ccccccccHHHHHHHHHh
Confidence                   34567777764

>PRK13388 acyl-CoA synthetase; Provisional

Probab=99.97  E-value=2.3e-28  Score=207.73  Aligned_cols=193  Identities=24%  Similarity=0.384  Sum_probs=157.6

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|+.+..++.......       ....+++.+  .|++++++...++.+.++..           
T Consensus       231 ~~~~i~~~~vt~~~~~p~~l~~l~~~~~~~~-------~~~~~l~~~--~G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~  301 (540)
T PRK13388        231 FLDDVRRYGATYFNYVGKPLAYILATPERPD-------DADNPLRVA--FGNEASPRDIAEFSRRFGCQVEDGYGSSEGA  301 (540)
T ss_pred             HHHHHHHhCCeEEEehHHHHHHHHhCCCCcc-------ccccceEEE--ECCCCCHHHHHHHHHHhCCceeccccccccc
Confidence            6788999999999999999998887654322       233456643  36677888888888776543           


Q ss_pred             -------------------ceE-----------EEEECCCCCcC-CCCCeeEEEEE-eCcccccccCCcccccC--CCCc
Q psy13807         71 -------------------HLI-----------VKVVDKKGNIV-PMGMCGEVCYR-GYNVMLGYYGEENKILE--NDEW  116 (204)
Q Consensus        71 -------------------~~~-----------v~i~d~~g~~~-~~~~~Gel~v~-~~~~~~~y~~~~~~~~~--~~~~  116 (204)
                                         ++.           +.++|++|+++ +.+..|||+++ |++++.||+++++.+..  .+||
T Consensus       302 ~~~~~~~~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~g~~~~~~~~~GEl~v~~g~~~~~gY~~~~~~t~~~~~~g~  381 (540)
T PRK13388        302 VIVVREPGTPPGSIGRGAPGVAIYNPETLTECAVARFDAHGALLNADEAIGELVNTAGAGFFEGYYNNPEATAERMRHGM  381 (540)
T ss_pred             ceeecCCCCCCCCCCCCCCCcEEEcCCCCccccceeccCccccccCCCcceEEEEecCCcccccccCChHHHHHHhhcCc
Confidence                               111           12334445554 34578999998 99999999999887765  5789


Q ss_pred             eeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHH
Q psy13807        117 FPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDD  196 (204)
Q Consensus       117 ~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~  196 (204)
                      |+|||+++++++|++++.||.+|+||++|.+|+|.+||+++.++|+|.+++|++.+++..++.+++++++.++...+.++
T Consensus       382 ~~TGD~~~~~~dg~l~i~GR~~d~i~~~G~~v~p~eIE~~l~~~~~V~~~~v~g~~~~~~g~~~~~~v~~~~~~~~~~~~  461 (540)
T PRK13388        382 YWSGDLAYRDADGWIYFAGRTADWMRVDGENLSAAPIERILLRHPAINRVAVYAVPDERVGDQVMAALVLRDGATFDPDA  461 (540)
T ss_pred             eeccceEEEcCCCcEEEeccCCceEEECCEEeCHHHHHHHHHhCCCceEEEEEEccCCCCCceeEEEEEECCCCcCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999888888889999988877788888


Q ss_pred             HHHHHhc
Q psy13807        197 IKTYCKG  203 (204)
Q Consensus       197 l~~~l~~  203 (204)
                      ++++|+.
T Consensus       462 l~~~l~~  468 (540)
T PRK13388        462 FAAFLAA  468 (540)
T ss_pred             HHHHHHh
Confidence            9888864

>PLN02387 long-chain-fatty-acid-CoA ligase family protein

Probab=99.96  E-value=5.8e-29  Score=216.91  Aligned_cols=183  Identities=25%  Similarity=0.319  Sum_probs=142.6

Q ss_pred             hHHHHHcCccEEEecHHHHHHHHhccCCCCCC-----------------------------Ccc----------cccCC-
Q psy13807          3 SRHIVKEKCTVLYGTPTMYVDLISSIQPLTEE-----------------------------MPN----------IAEEL-   42 (204)
Q Consensus         3 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-----------------------------~~~----------~~~~l-   42 (204)
                      ++.++++++|++.++|++++.+.+......+.                             ...          ....+ 
T Consensus       340 ~~~i~~~~pT~~~~vP~~l~~l~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg  419 (696)
T PLN02387        340 KGDASALKPTLMTAVPAILDRVRDGVRKKVDAKGGLAKKLFDIAYKRRLAAIEGSWFGAWGLEKLLWDALVFKKIRAVLG  419 (696)
T ss_pred             hhhHHHhCCcEEEehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhccCCcccccccchhhHHHHHHHHHHHhC
Confidence            45789999999999999999887542100000                             000          00001 


Q ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhCCc--------------------------------ceEEEEEC-CCCCcC---CC
Q psy13807         43 SSPVIALTAGAPCSPTLFNKIRDTFGIK--------------------------------HLIVKVVD-KKGNIV---PM   86 (204)
Q Consensus        43 ~~l~~~~~~G~~~~~~~~~~~~~~~g~~--------------------------------~~~v~i~d-~~g~~~---~~   86 (204)
                      +++|.+++||+++++++.+++...+|++                                ++.++++| +++...   .+
T Consensus       420 ~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~  499 (696)
T PLN02387        420 GRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKP  499 (696)
T ss_pred             CcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCC
Confidence            5899999999999999998887766543                                56778887 444322   23


Q ss_pred             CCeeEEEEEeCcccccccCCcccccC-----CCC--ceeccceEEEecCCeEEEEeeccceEEe-CceeeChHHHHHHHh
Q psy13807         87 GMCGEVCYRGYNVMLGYYGEENKILE-----NDE--WFPSGDFFILHENGYGQVVGRIKDIIIR-GGENIIPKEIEYVLQ  158 (204)
Q Consensus        87 ~~~Gel~v~~~~~~~~y~~~~~~~~~-----~~~--~~~TGD~~~~~~~g~~~~~GR~dd~i~~-~G~~v~~~~ie~~l~  158 (204)
                      +..|||+++||+++.|||++++.+..     .+|  ||+|||+|++|+||+++|.||.+|+||. +|++|+|.+||++|.
T Consensus       500 ~p~GEi~vrGp~v~~GY~~~pe~T~~~f~~d~~G~~W~~TGDig~~d~dG~l~i~gR~kd~ik~~~Ge~I~p~eIE~~l~  579 (696)
T PLN02387        500 MPRGEIVIGGPSVTLGYFKNQEKTDEVYKVDERGMRWFYTGDIGQFHPDGCLEIIDRKKDIVKLQHGEYVSLGKVEAALS  579 (696)
T ss_pred             CCCceEEeccCcccchhcCCHHHHhhhhccccCCCceeecCceEEECCCCcEEEEEcccceEECCCCeEEchHHHHHHHh
Confidence            34699999999999999999998765     234  9999999999999999999999999996 699999999999999


Q ss_pred             cCCCcceEEEEeeeCCCCCceEEEEEEeCC
Q psy13807        159 THPDVVEAQVYGVPDERLGEVVVANIELKP  188 (204)
Q Consensus       159 ~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~  188 (204)
                      ++|.|.+++|++.+..   ..++|+|++.+
T Consensus       580 ~~p~V~~~~V~g~~~~---~~~~a~vv~~~  606 (696)
T PLN02387        580 VSPYVDNIMVHADPFH---SYCVALVVPSQ  606 (696)
T ss_pred             cCCCeeEEEEEecCCc---ceEEEEEEeCH
Confidence            9999999999986522   36788888753

>PRK05691 peptide synthase; Validated

Probab=99.96  E-value=1.1e-28  Score=244.85  Aligned_cols=193  Identities=21%  Similarity=0.314  Sum_probs=168.4

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC---------c--
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI---------K--   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~---------~--   70 (204)
                      +++.++++++|++.++|++++.+.+...  .       ..+++||.+++||+++++++.++|.+.++.         +  
T Consensus      1356 l~~~i~~~~vt~~~~~Ps~l~~l~~~~~--~-------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 1426 (4334)
T PRK05691       1356 IAELVQQYGVTTLHFVPPLLQLFIDEPL--A-------AACTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTET 1426 (4334)
T ss_pred             HHHHHHHcCCeEEECcHHHHHHHHhCcc--c-------ccCCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChh
Confidence            6789999999999999999999876432  1       357899999999999999999999876521         1  


Q ss_pred             ------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC----------CCCc
Q psy13807         71 ------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE----------NDEW  116 (204)
Q Consensus        71 ------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~----------~~~~  116 (204)
                                              ++.++++|++++++|.|..|||+++|+++++||+++++.+..          ..+|
T Consensus      1427 ~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~GYl~~p~~t~~~f~~~p~~~~~~r~ 1506 (4334)
T PRK05691       1427 AINVTHWQCQAEDGERSPIGRPLGNVLCRVLDAELNLLPPGVAGELCIGGAGLARGYLGRPALTAERFVPDPLGEDGARL 1506 (4334)
T ss_pred             eeeeeeeecccccCCCCcccceeCCCEEEEECCCCCCCCCCCceEEEecCcccchhhcCCccccHhhCCCCCCCCCCceE
Confidence                                    567889999999999999999999999999999999987764          1359


Q ss_pred             eeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHH
Q psy13807        117 FPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDD  196 (204)
Q Consensus       117 ~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~  196 (204)
                      |+|||++++++||.++|+||+|++||++|++|+|.|||++|.++|+|.+++|++.+.. .+..++++++..++...+.++
T Consensus      1507 yrTGDl~~~~~dG~l~~~GR~d~qiki~G~rie~~eIE~~l~~~~~V~~a~v~~~~~~-~~~~lva~~~~~~~~~~~~~~ 1585 (4334)
T PRK05691       1507 YRTGDRARWNADGALEYLGRLDQQVKLRGFRVEPEEIQARLLAQPGVAQAAVLVREGA-AGAQLVGYYTGEAGQEAEAER 1585 (4334)
T ss_pred             EEccceEEECCCCCEEEecccCcEEEECCEEcCHHHHHHHHHhCCCcceEEEEEeeCC-CCCEEEEEEEeCCCCCCCHHH
Confidence            9999999999999999999999999999999999999999999999999999976554 457899999988776677788


Q ss_pred             HHHHHhcC
Q psy13807        197 IKTYCKGK  204 (204)
Q Consensus       197 l~~~l~~~  204 (204)
                      ++++|+++
T Consensus      1586 l~~~l~~~ 1593 (4334)
T PRK05691       1586 LKAALAAE 1593 (4334)
T ss_pred             HHHHHHHh
Confidence            98888753

>PRK08162 acyl-CoA synthetase; Validated

Probab=99.96  E-value=3.6e-28  Score=206.54  Aligned_cols=195  Identities=37%  Similarity=0.574  Sum_probs=163.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHH-------hCCc----
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDT-------FGIK----   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~-------~g~~----   70 (204)
                      +++.++++++|++.++|++++.|++......       ..+.+.+.++++|+++++.+.+++.+.       ||.+    
T Consensus       262 ~~~~l~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~  334 (545)
T PRK08162        262 IFDLIREHGVTHYCGAPIVLSALINAPAEWR-------AGIDHPVHAMVAGAAPPAAVIAKMEEIGFDLTHVYGLTETYG  334 (545)
T ss_pred             HHHHHHHcCCeEEEechHHHHHHHhCccccc-------cCCccceEEEECCCCCCHHHHHHHHHhCCceeecccccccCc
Confidence            6889999999999999999999987654333       345567778899999999999887653       1211    


Q ss_pred             --------------------------------ceEEEEECC-CCCcCCCC--CeeEEEEEeCcccccccCCcccccC--C
Q psy13807         71 --------------------------------HLIVKVVDK-KGNIVPMG--MCGEVCYRGYNVMLGYYGEENKILE--N  113 (204)
Q Consensus        71 --------------------------------~~~v~i~d~-~g~~~~~~--~~Gel~v~~~~~~~~y~~~~~~~~~--~  113 (204)
                                                      ...++++|+ ++.+++.+  ..|||+++++.++.||+++++.+..  .
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~~~~~g~~~Gel~v~g~~~~~gY~~~~~~~~~~~~  414 (545)
T PRK08162        335 PATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDPDTMQPVPADGETIGEIMFRGNIVMKGYLKNPKATEEAFA  414 (545)
T ss_pred             ceeecccccccccCCccchhhccCCCCcccCCcceEEEEcCCCCcccCCCCCceeEEEEecCcchhhhcCChhhhHHHhh
Confidence                                            012456664 47777653  4699999999999999999887766  5


Q ss_pred             CCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC
Q psy13807        114 DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT  193 (204)
Q Consensus       114 ~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~  193 (204)
                      ++||+|||++++|++|++++.||.||++|++|.+|+|.+||+.+.++|+|.+++|++.+++..++.+++++++.++...+
T Consensus       415 ~g~~~TGDl~~~d~dg~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~~~~~~~~v~~~~~~~~~  494 (545)
T PRK08162        415 GGWFHTGDLAVLHPDGYIKIKDRSKDIIISGGENISSIEVEDVLYRHPAVLVAAVVAKPDPKWGEVPCAFVELKDGASAT  494 (545)
T ss_pred             CCCcccCceEEEcCCccEEEEecccceEEeCCEEECHHHHHHHHHhCCcccEEEEEeeeccccCceEEEEEEeCCCCCCC
Confidence            78999999999999999999999999999999999999999999999999999999998877788999999998776677


Q ss_pred             HHHHHHHHhc
Q psy13807        194 QDDIKTYCKG  203 (204)
Q Consensus       194 ~~~l~~~l~~  203 (204)
                      .++++++|++
T Consensus       495 ~~~l~~~~~~  504 (545)
T PRK08162        495 EEEIIAHCRE  504 (545)
T ss_pred             HHHHHHHHHH
Confidence            8888888865

>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated

Probab=99.96  E-value=2.8e-28  Score=213.51  Aligned_cols=187  Identities=19%  Similarity=0.330  Sum_probs=151.8

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|+++..+.+..  ..       .++++||.+++||+++++++.+++.+.+|..           
T Consensus       447 ~~~~i~~~~vt~~~~~p~~~~~l~~~~--~~-------~~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~  517 (718)
T PRK08043        447 VPELVYDRNCTVLFGTSTFLGNYARFA--NP-------YDFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECA  517 (718)
T ss_pred             HHHHHHhcCCeEEEchHHHHHHhhhhc--Cc-------ccccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCccccc
Confidence            467899999999999999998776542  11       4678999999999999999999999887755           


Q ss_pred             ---------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCC--ccc-------ccC---CCCce
Q psy13807         71 ---------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGE--ENK-------ILE---NDEWF  117 (204)
Q Consensus        71 ---------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~--~~~-------~~~---~~~~~  117 (204)
                                           ++.++++|++|    .++.|||+++|++++.|||++  ++.       +..   .+|||
T Consensus       518 ~~~~~~~~~~~~~~svG~p~pg~~~~i~d~~~----~~~~Gel~v~g~~v~~GY~~~e~~~~~~~~~~~~~~~~~~~gw~  593 (718)
T PRK08043        518 PVVSINVPMAAKPGTVGRILPGMDARLLSVPG----IEQGGRLQLKGPNIMNGYLRVEKPGVLEVPTAENARGEMERGWY  593 (718)
T ss_pred             ceEEecCCcccCCCCCCCcCCCCeeEEecCCC----CCCceEEEEecCCccccccCCCCcccccccccccccccccCCeE
Confidence                                 22333333332    245699999999999999983  331       111   46899


Q ss_pred             eccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHH
Q psy13807        118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDI  197 (204)
Q Consensus       118 ~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l  197 (204)
                      +|||++++|+||++++.||.+|+||++|++|+|.|||+++.+++.+.+++|++.+++..++.+++++.   +...+.+++
T Consensus       594 ~TGDlg~~d~dG~l~i~GR~~d~I~~~G~~V~p~eIE~~l~~~~~~~~~avv~~~~~~~ge~~v~~~~---~~~~~~~~l  670 (718)
T PRK08043        594 DTGDIVRFDEQGFVQIQGRAKRFAKIAGEMVSLEMVEQLALGVSPDKQHATAIKSDASKGEALVLFTT---DSELTREKL  670 (718)
T ss_pred             ecCCEEEEcCCCcEEEEecCCCeeEeCcEEcCHHHHHHHHHhCCccceEEEEEccCCCCCceEEEEEc---CcccCHHHH
Confidence            99999999999999999999999999999999999999999998888889999888878888887764   344677889


Q ss_pred             HHHHhcC
Q psy13807        198 KTYCKGK  204 (204)
Q Consensus       198 ~~~l~~~  204 (204)
                      +++++++
T Consensus       671 ~~~~~~~  677 (718)
T PRK08043        671 QQYAREH  677 (718)
T ss_pred             HHHHHhc
Confidence            8888753

>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed

Probab=99.96  E-value=3.1e-28  Score=202.90  Aligned_cols=184  Identities=27%  Similarity=0.418  Sum_probs=150.2

Q ss_pred             HHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc----------ceEEE
Q psy13807          6 IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------HLIVK   75 (204)
Q Consensus         6 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------~~~v~   75 (204)
                      ..++++|.+.++|++++.+++..   .       ..++++|.+++||+++++++.+++.+ ++.+          +..+.
T Consensus       203 ~~~~~~t~~~~vP~~l~~l~~~~---~-------~~l~~l~~i~~gG~~l~~~~~~~~~~-~~~~l~~~YG~TE~~~~~~  271 (452)
T PRK07445        203 PPNPSDFFLSLVPTQLQRLLQLR---P-------QWLAQFRTILLGGAPAWPSLLEQARQ-LQLRLAPTYGMTETASQIA  271 (452)
T ss_pred             hhhcCceEEEehHHHHHHHHhhC---h-------hhhhcceEEEECCccCCHHHHHHHHh-cCCeEecCcchhhhccccc
Confidence            34688999999999999987621   2       35789999999999999999988764 3432          11111


Q ss_pred             EEC---------CCCCcCCC-------CCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEecCCeEEEEeeccc
Q psy13807         76 VVD---------KKGNIVPM-------GMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIKD  139 (204)
Q Consensus        76 i~d---------~~g~~~~~-------~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~dd  139 (204)
                      ...         .-|.++|.       ++.|||++++++++.||++++.   ..++||+|||++++|+||++++.||.||
T Consensus       272 ~~~~~~~~~~~~~~G~~~p~~~v~i~~g~~Gel~v~g~~~~~gY~~~~~---~~~g~~~TGDl~~~d~dG~l~~~GR~dd  348 (452)
T PRK07445        272 TLKPDDFLAGNNSSGQVLPHAQITIPANQTGNITIQAQSLALGYYPQIL---DSQGIFETDDLGYLDAQGYLHILGRNSQ  348 (452)
T ss_pred             ccCchhhccCCCcCCccCCCCeEEEcCCCcceEEEeCCccchhhcCCcc---CCCCEEECCCEEEEcCCCCEEEEeecCC
Confidence            111         12555553       7889999999999999998643   2478999999999999999999999999


Q ss_pred             eEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807        140 IIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK  204 (204)
Q Consensus       140 ~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  204 (204)
                      +||++|.+|+|.+||+++.++|+|.+++|++.+++..|+.++++++..++ ..+.++++++|+++
T Consensus       349 ~I~~~G~~V~p~eIE~~l~~~p~V~~a~V~g~~~~~~g~~~~a~vv~~~~-~~~~~~l~~~~~~~  412 (452)
T PRK07445        349 KIITGGENVYPAEVEAAILATGLVQDVCVLGLPDPHWGEVVTAIYVPKDP-SISLEELKTAIKDQ  412 (452)
T ss_pred             EEEECCEEECHHHHHHHHHhCCCcceEEEEeccCcCCCcEEEEEEEeCCC-CCCHHHHHHHHHHh
Confidence            99999999999999999999999999999999998888899999998765 45678888888753

>PRK07868 acyl-CoA synthetase; Validated

Probab=99.96  E-value=3.1e-28  Score=218.97  Aligned_cols=188  Identities=18%  Similarity=0.236  Sum_probs=152.7

Q ss_pred             CHhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC-c---------
Q psy13807          1 MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI-K---------   70 (204)
Q Consensus         1 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~-~---------   70 (204)
                      ++++.|++|++|++.++|++++.|++......       .+++++|.++  |+.+++++.+++.+.|+. .         
T Consensus       685 ~~~~~I~~~~vT~~~~~Ps~l~~L~~~~~~~~-------~~~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE  755 (994)
T PRK07868        685 RFVQEVRQYGVTVVSYTWAMLREVVDDPAFVL-------HGNHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTD  755 (994)
T ss_pred             HHHHHHHHhCCcEEEeHHHHHHHHHhCcCCcc-------CCCCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccc
Confidence            37899999999999999999999987643332       4577899876  445999999999988762 1         


Q ss_pred             ---------------------ce-EEEE-----------ECCCC--CcCCCCCeeEEEEEeCcccccccCCccccc----
Q psy13807         71 ---------------------HL-IVKV-----------VDKKG--NIVPMGMCGEVCYRGYNVMLGYYGEENKIL----  111 (204)
Q Consensus        71 ---------------------~~-~v~i-----------~d~~g--~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~----  111 (204)
                                           ++ .+++           +|++|  ++++.|+.|||+++++..    ++ ++.+.    
T Consensus       756 ~~~~~~~~~~~~~~svG~p~pg~~~v~i~~~d~~~g~li~d~~G~~~~~~~ge~Gel~~~~~~~----~~-p~~t~~~~~  830 (994)
T PRK07868        756 GQAVLANVSGAKIGSKGRPLPGAGRVELAAYDPEHDLILEDDRGFVRRAEVNEVGVLLARARGP----ID-PTASVKRGV  830 (994)
T ss_pred             ccccccccCCCCCcccCCccCCCCceeEEEecCcCCceeecCCceEEEcCCCCceEEEEecCCC----CC-hhhhhHhcc
Confidence                                 22 3333           24556  668889999999998753    22 22211    


Q ss_pred             --CCCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCC
Q psy13807        112 --ENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG  189 (204)
Q Consensus       112 --~~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~  189 (204)
                        ..+|||+|||+|++|+||+|+|+||.||+||++|.+|+|.|||++|.+||+|.+++|++.+++. ++.++++|++.++
T Consensus       831 ~~~~dgw~~TGDlg~~d~dG~l~~~GR~dd~Ik~~G~~I~p~EIE~~L~~hp~V~~aaVvg~~d~~-~~~~~a~Vv~~~~  909 (994)
T PRK07868        831 FAPADTWISTEYLFRRDDDGDYWLVDRRGSVIRTARGPVYTEPVTDALGRIGGVDLAVTYGVEVGG-RQLAVAAVTLRPG  909 (994)
T ss_pred             cccCCEEEeccceEEEcCCCCEEEeccCCCEEEeCCceEcHHHHHHHHhcCCCeeEEEEEeecCCC-CceEEEEEEeCCC
Confidence              1479999999999999999999999999999999999999999999999999999999998865 5789999999888


Q ss_pred             CCCCHHHHHHHHhc
Q psy13807        190 ASLTQDDIKTYCKG  203 (204)
Q Consensus       190 ~~~~~~~l~~~l~~  203 (204)
                      ...+.++|+++|++
T Consensus       910 ~~~~~~~L~~~l~~  923 (994)
T PRK07868        910 AAITAADLTEALAS  923 (994)
T ss_pred             CcCCHHHHHHHHHh
Confidence            77888999998863

>PRK09192 acyl-CoA synthetase; Validated

Probab=99.96  E-value=6.4e-28  Score=206.59  Aligned_cols=195  Identities=23%  Similarity=0.442  Sum_probs=157.0

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC-------------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG-------------   68 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g-------------   68 (204)
                      +++++.++++++++..|..+..+........    ....+++++|.+++||+++++.+.+.+.+.++             
T Consensus       262 ~~~~i~~~~~t~~~~~~~~~~l~~~~~~~~~----~~~~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~y  337 (579)
T PRK09192        262 WLDLISRNRGTISYSPPFGYELCARRVNSKD----LAELDLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSY  337 (579)
T ss_pred             HHHHHHhcCcEEEeCCcHHHHHHHHhhcccc----ccccchhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhccccc
Confidence            5788999999988876666665543322111    00146789999999999999999988776542             


Q ss_pred             -Cc----------------------------------------------------ceEEEEECCCCCcCCCCCeeEEEEE
Q psy13807         69 -IK----------------------------------------------------HLIVKVVDKKGNIVPMGMCGEVCYR   95 (204)
Q Consensus        69 -~~----------------------------------------------------~~~v~i~d~~g~~~~~~~~Gel~v~   95 (204)
                       .+                                                    ++.++++|+++.+++.++.|||+++
T Consensus       338 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~p~~~v~i~d~~~~~~~~g~~Gel~i~  417 (579)
T PRK09192        338 GLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGAETRRVRTFVNCGKALPGHEIEIRNEAGMPLPERVVGHICVR  417 (579)
T ss_pred             ccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCCCCccceeEeecCCcCCCcEEEEECCCCCCCCCCCEEEEEec
Confidence             11                                                    3457778888999999999999999


Q ss_pred             eCcccccccCCcccccC---CCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcc--eEEEEe
Q psy13807         96 GYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVV--EAQVYG  170 (204)
Q Consensus        96 ~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~--~~~v~~  170 (204)
                      |++++.||++++ .+..   .++||+|||++++ ++|+++++||+||+||++|++|+|.+||++|+.+|+|.  ++++++
T Consensus       418 g~~~~~gY~~~~-~~~~~~~~dgw~~TGDlg~~-~~G~l~~~GR~dd~i~~~G~~v~p~eIE~~l~~~p~V~~~~~~v~~  495 (579)
T PRK09192        418 GPSLMSGYFRDE-ESQDVLAADGWLDTGDLGYL-LDGYLYITGRAKDLIIINGRNIWPQDIEWIAEQEPELRSGDAAAFS  495 (579)
T ss_pred             CCchhhhhcCCc-cccccccCCceeeccceeeE-ECCEEEEEeccccEEEECCCccCHHHHHHHHHhcCCccCCcEEEEE
Confidence            999999999984 3333   5889999999999 99999999999999999999999999999999999998  899999


Q ss_pred             eeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        171 VPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       171 ~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      .+++. ++.++++++..++...+.++|++++++
T Consensus       496 ~~~~~-~~~~~~~v~~~~~~~~~~~~l~~~~~~  527 (579)
T PRK09192        496 IAQEN-GEKIVLLVQCRISDEERRGQLIHALAA  527 (579)
T ss_pred             eccCC-CeeEEEEEEecCCChHHHHHHHHHHHH
Confidence            98874 558888888766555566677776654

>PRK05691 peptide synthase; Validated

Probab=99.96  E-value=5.7e-28  Score=239.91  Aligned_cols=193  Identities=23%  Similarity=0.310  Sum_probs=162.7

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC---------c--
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI---------K--   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~---------~--   70 (204)
                      +++.++++++|++.++|++++.|.......        ....++|.+++||+++++++.++|.+.++.         +  
T Consensus      2415 l~~~i~~~~vt~~~~tPs~~~~l~~~~~~~--------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~ 2486 (4334)
T PRK05691       2415 ICQLIREQQVSILGFTPSYGSQLAQWLAGQ--------GEQLPVRMCITGGEALTGEHLQRIRQAFAPQLFFNAYGPTET 2486 (4334)
T ss_pred             HHHHHHHcCCeEEEcCHHHHHHHHHhhhcc--------ccCCCceEEEEccccCCHHHHHHHHHhCCCceEEeCcCCCcc
Confidence            678999999999999999999988764322        245679999999999999999999876532         2  


Q ss_pred             ---------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC----------C
Q psy13807         71 ---------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE----------N  113 (204)
Q Consensus        71 ---------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~----------~  113 (204)
                                                 +..++|+|++++++|.|..|||+++|++++.||+++++.+..          .
T Consensus      2487 ~~~~~~~~~~~~~~~~~~~~~iG~pi~~~~~~i~d~~~~~vp~G~~GEL~i~G~~v~~GY~~~~~~t~~~F~~~p~~~~~ 2566 (4334)
T PRK05691       2487 VVMPLACLAPEQLEEGAASVPIGRVVGARVAYILDADLALVPQGATGELYVGGAGLAQGYHDRPGLTAERFVADPFAADG 2566 (4334)
T ss_pred             eEEEEEeecccccccCCCCCccccccCCCEEEEECCCCCCCCCCCceEEEecccccCccccCChhhhhhhccCCCCCCCC
Confidence                                       335678888899999999999999999999999999987764          2


Q ss_pred             CCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCC----
Q psy13807        114 DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG----  189 (204)
Q Consensus       114 ~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~----  189 (204)
                      ++||+|||++++++||.++|+||.||+||++|++|+|.|||+.|.++|+|.+++|++.+. ..++.++++++....    
T Consensus      2567 ~r~y~TGDl~~~~~dG~l~~~GR~d~qvki~G~rIe~~EIE~~l~~~p~V~~a~V~~~~~-~~~~~lva~vv~~~~~~~~ 2645 (4334)
T PRK05691       2567 GRLYRTGDLVRLRADGLVEYVGRIDHQVKIRGFRIELGEIESRLLEHPAVREAVVLALDT-PSGKQLAGYLVSAVAGQDD 2645 (4334)
T ss_pred             CceEeccceEEEcCCCCEEEeecccCeEEeeeEEechHHHHHHHHhCCCcceEEEEEeeC-CCCcEEEEEEEeccccccc
Confidence            469999999999999999999999999999999999999999999999999999998854 356789999887432    


Q ss_pred             --CCCCHHHHHHHHhc
Q psy13807        190 --ASLTQDDIKTYCKG  203 (204)
Q Consensus       190 --~~~~~~~l~~~l~~  203 (204)
                        .....+.++++|++
T Consensus      2646 ~~~~~~~~~l~~~l~~ 2661 (4334)
T PRK05691       2646 EAQAALREALKAHLKQ 2661 (4334)
T ss_pred             ccccccHHHHHHHHHh
Confidence              12235678877765

>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.96  E-value=2.2e-27  Score=192.16  Aligned_cols=192  Identities=23%  Similarity=0.369  Sum_probs=152.3

Q ss_pred             HhHHHHHcC--ccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCcceEEEEECC
Q psy13807          2 ISRHIVKEK--CTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDK   79 (204)
Q Consensus         2 ~~~~i~~~~--~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~~~~v~i~d~   79 (204)
                      +++.+++++  .++...+|..+..++..... .       ..+++++.+++||+++++++.+++.+ ++.+-+..+-..+
T Consensus       116 ~~~~i~~~~~~~~~~~~~p~~l~~~~~~~~~-~-------~~~~~l~~i~~gG~~l~~~~~~~~~~-~~~~v~~~YG~TE  186 (358)
T PRK07824        116 LPRAVAELGGGRRYTSLVPMQLAKALDDPAA-T-------AALAELDAVLVGGGPAPAPVLDAAAA-AGINVVRTYGMSE  186 (358)
T ss_pred             HHHHHHHhCCCceEEEecHHHHHHHHhCccc-c-------CCcccceEEEECCCCCCHHHHHHHHh-cCCcEEecccCCc
Confidence            567888888  56677788888776654332 1       35789999999999999999998875 3543111111111


Q ss_pred             -------CCCcCCCC----CeeEEEEEeCcccccccCCcccccC-CCCceeccceEEEecCCeEEEEeeccceEEeCcee
Q psy13807         80 -------KGNIVPMG----MCGEVCYRGYNVMLGYYGEENKILE-NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN  147 (204)
Q Consensus        80 -------~g~~~~~~----~~Gel~v~~~~~~~~y~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~  147 (204)
                             .|.+++.-    ..|+|+++|+.++.||+++++.... .++||+|||++++ ++|.+++.||.||+||++|.+
T Consensus       187 ~~~~~~~~G~~~~g~~v~i~~Gei~v~g~~~~~gY~~~~~~~~~~~~g~~~TGDl~~~-~~g~l~i~GR~~d~i~~~G~~  265 (358)
T PRK07824        187 TSGGCVYDGVPLDGVRVRVEDGRIALGGPTLAKGYRNPVDPDPFAEPGWFRTDDLGAL-DDGVLTVLGRADDAISTGGLT  265 (358)
T ss_pred             cCCCcCcCceeCCCCEEEecCCEEEEecCccccccCCCcccccccCCCceecccEEEE-eCCEEEEEeccCCeEEECCEE
Confidence                   13332211    2399999999999999998875543 5789999999999 899999999999999999999


Q ss_pred             eChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       148 v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      |+|.+||+++.++|+|.+++|++.+++..++.++++++..++...+.+++++++++
T Consensus       266 v~p~eIE~~l~~~~~V~~~~vv~~~~~~~g~~~~a~v~~~~~~~~~~~~i~~~~~~  321 (358)
T PRK07824        266 VLPQVVEAALATHPAVADCAVFGLPDDRLGQRVVAAVVGDGGPAPTLEALRAHVAR  321 (358)
T ss_pred             ECHHHHHHHHHhCCCcceEEEEecCCCCCceEEEEEEEeCCCCCcCHHHHHHHHHh
Confidence            99999999999999999999999998888899999998877667788889888875

>PLN02430 long-chain-fatty-acid-CoA ligase

Probab=99.96  E-value=4.8e-28  Score=210.06  Aligned_cols=184  Identities=24%  Similarity=0.374  Sum_probs=142.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCC----CC-----------------------CCcc----------cccCC-C
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPL----TE-----------------------EMPN----------IAEEL-S   43 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~----~~-----------------------~~~~----------~~~~l-~   43 (204)
                      +++.|++++||++.++|.+++.+.+.....    ..                       ....          .+..+ +
T Consensus       304 l~~~l~~~~pt~~~~vP~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~l~~~~i~~~~G~  383 (660)
T PLN02430        304 LRDDLMELKPTLLAGVPRVFERIHEGIQKALQELNPRRRLIFNALYKYKLAWMNRGYSHKKASPMADFLAFRKVKAKLGG  383 (660)
T ss_pred             HHHHHHHhCCcEEEecHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHhcCCCCCCcchhHHHHHHHHHHHHhCC
Confidence            577899999999999999998776521100    00                       0000          00001 5


Q ss_pred             CceEEEEeCCCCCHHHHHHHHHHhCCc---------------------------------ceEEEEEC--CCC-CcCCCC
Q psy13807         44 SPVIALTAGAPCSPTLFNKIRDTFGIK---------------------------------HLIVKVVD--KKG-NIVPMG   87 (204)
Q Consensus        44 ~l~~~~~~G~~~~~~~~~~~~~~~g~~---------------------------------~~~v~i~d--~~g-~~~~~~   87 (204)
                      ++|.+++||+++++++.++++...+..                                 ++.+++.|  +.| .+++.+
T Consensus       384 ~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~~  463 (660)
T PLN02430        384 RLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGEP  463 (660)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCCC
Confidence            899999999999999877665432222                                 35556654  222 345555


Q ss_pred             CeeEEEEEeCcccccccCCcccccC--CCCceeccceEEEecCCeEEEEeeccceEEe-CceeeChHHHHHHHhcCCCcc
Q psy13807         88 MCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIR-GGENIIPKEIEYVLQTHPDVV  164 (204)
Q Consensus        88 ~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~-~G~~v~~~~ie~~l~~~~~V~  164 (204)
                      ..|||+++||+++.|||++++.+..  .+|||+|||++++|+||++++.||.+|+||. +|++|+|.+||+++.++|.|.
T Consensus       464 ~~GEi~vrg~~v~~GY~~~~e~t~~~~~dGw~~TGDig~~d~dG~l~i~gR~kd~ik~~~G~~V~p~~IE~~l~~~p~V~  543 (660)
T PLN02430        464 PRGEICVRGKCLFSGYYKNPELTEEVMKDGWFHTGDIGEILPNGVLKIIDRKKNLIKLSQGEYVALEYLENVYGQNPIVE  543 (660)
T ss_pred             CcceEEecCCCccccccCChHHhhhhhhccceeccceEEECCCCcEEEEEcccccEEcCCCcEEchHHHHHHHhcCCCee
Confidence            6799999999999999999998876  6899999999999999999999999999995 799999999999999999999


Q ss_pred             eEEEEeeeCCCCCceEEEEEEeCC
Q psy13807        165 EAQVYGVPDERLGEVVVANIELKP  188 (204)
Q Consensus       165 ~~~v~~~~~~~~~~~~~a~v~~~~  188 (204)
                      +++|++..   .+..++|+|++.+
T Consensus       544 ~~~V~G~~---~~~~~~A~vv~~~  564 (660)
T PLN02430        544 DIWVYGDS---FKSMLVAVVVPNE  564 (660)
T ss_pred             EEEEEecC---CcceEEEEEEcCH
Confidence            99999842   3468899998853

>PTZ00216 acyl-CoA synthetase; Provisional

Probab=99.96  E-value=3.8e-28  Score=212.00  Aligned_cols=180  Identities=22%  Similarity=0.321  Sum_probs=140.1

Q ss_pred             HHHHcCccEEEecHHHHHHHHhccCCCCCCC-------------------------cc--------ccc-CCCCceEEEE
Q psy13807          5 HIVKEKCTVLYGTPTMYVDLISSIQPLTEEM-------------------------PN--------IAE-ELSSPVIALT   50 (204)
Q Consensus         5 ~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~-------------------------~~--------~~~-~l~~l~~~~~   50 (204)
                      .++++++|++.++|.+++.+.+.........                         +.        .+. ..+++|.+++
T Consensus       356 ~l~~~~pT~~~~vP~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~~lr~i~~  435 (700)
T PTZ00216        356 DLTEFRPVFLIGVPRIFDTIKKAVEAKLPPVGSLKRRVFDHAYQSRLRALKEGKDTPYWNEKVFSAPRAVLGGRVRAMLS  435 (700)
T ss_pred             hHHHcCCcEEEechHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHhCCcEEEEEE
Confidence            6889999999999999998765321000000                         00        000 0157999999


Q ss_pred             eCCCCCHHHHHHHHHHhC-------Cc------------------------ceEEEEECCCC--CcCCCCCeeEEEEEeC
Q psy13807         51 AGAPCSPTLFNKIRDTFG-------IK------------------------HLIVKVVDKKG--NIVPMGMCGEVCYRGY   97 (204)
Q Consensus        51 ~G~~~~~~~~~~~~~~~g-------~~------------------------~~~v~i~d~~g--~~~~~~~~Gel~v~~~   97 (204)
                      ||+++++++.++++..++       .+                        ++.++++|+++  ...+++..|||+++|+
T Consensus       436 GGa~l~~~~~~~~~~~~~~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~~GEL~vrG~  515 (700)
T PTZ00216        436 GGGPLSAATQEFVNVVFGMVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEPRGEILLRGP  515 (700)
T ss_pred             CCCCCCHHHHHHHHHHhhhHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhhccCCCCCCCceEEEcCC
Confidence            999999999887765432       22                        67888888764  2345566799999999


Q ss_pred             cccccccCCcccccC---CCCceeccceEEEecCCeEEEEeeccceEE-eCceeeChHHHHHHHhcCCCcceE--EEEee
Q psy13807         98 NVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIII-RGGENIIPKEIEYVLQTHPDVVEA--QVYGV  171 (204)
Q Consensus        98 ~~~~~y~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~-~~G~~v~~~~ie~~l~~~~~V~~~--~v~~~  171 (204)
                      +++.|||++|+.++.   .+|||+|||+|++|+||+++|+||.||+|| ++|++|+|.+||+++.++|.|.++  +|++.
T Consensus       516 ~v~~GY~~~pe~T~~~f~~dGw~~TGDig~~d~dG~l~i~GR~kd~ik~~~G~~I~p~eIE~~l~~~p~V~~~~~~v~~~  595 (700)
T PTZ00216        516 FLFKGYYKQEELTREVLDEDGWFHTGDVGSIAANGTLRIIGRVKALAKNCLGEYIALEALEALYGQNELVVPNGVCVLVH  595 (700)
T ss_pred             cccchhcCChhHhhhhccccCCeeccceEEEcCCCcEEEEEehHhheecCCCceeccHHHHHHHhcCcCcccceEEEEEe
Confidence            999999999998876   579999999999999999999999999998 899999999999999999999973  44433


Q ss_pred             eCCCCCceEEEEEEeC
Q psy13807        172 PDERLGEVVVANIELK  187 (204)
Q Consensus       172 ~~~~~~~~~~a~v~~~  187 (204)
                      ++   ...++|+|++.
T Consensus       596 ~~---~~~l~a~vv~~  608 (700)
T PTZ00216        596 PA---RSYICALVLTD  608 (700)
T ss_pred             cC---CceEEEEEecC
Confidence            22   24788888874

>PRK07798 acyl-CoA synthetase; Validated

Probab=99.96  E-value=5.2e-27  Score=198.47  Aligned_cols=194  Identities=31%  Similarity=0.463  Sum_probs=163.2

Q ss_pred             HhHHHHHcCccEEEecHHHHH-HHHhccC-CCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh-CCc--------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYV-DLISSIQ-PLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF-GIK--------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~-~l~~~~~-~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~-g~~--------   70 (204)
                      +++.++++++|.+.++|..+. .+..... ...       ..+++++.+++||+++++++.+++.+.+ +..        
T Consensus       260 ~~~~i~~~~~t~~~~~~~~~~~~l~~~~~~~~~-------~~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~t  332 (533)
T PRK07798        260 VWRTIEREKVNVITIVGDAMARPLLDALEARGP-------YDLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSS  332 (533)
T ss_pred             HHHHHHHhCCeEEEechHHHHHHHHHHhccccc-------CCCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeeccc
Confidence            678999999999999987654 3444332 112       4678999999999999999999999876 322        


Q ss_pred             ------------------------ceEEEEECCCCCcCCCCCe--eEEEEEeCcccccccCCcccccC------CCCcee
Q psy13807         71 ------------------------HLIVKVVDKKGNIVPMGMC--GEVCYRGYNVMLGYYGEENKILE------NDEWFP  118 (204)
Q Consensus        71 ------------------------~~~v~i~d~~g~~~~~~~~--Gel~v~~~~~~~~y~~~~~~~~~------~~~~~~  118 (204)
                                              +..++++|++|++++.|..  |+++ .++.++.||+++++.+..      ..+||+
T Consensus       333 E~~~~~~~~~~~~~~~~g~~~~~~~~~~~i~~~~~~~~~~g~~~~g~l~-~~~~~~~gy~~~~~~t~~~f~~~~~~~~~~  411 (533)
T PRK07798        333 ETGFGGSGTVAKGAVHTGGPRFTIGPRTVVLDEDGNPVEPGSGEIGWIA-RRGHIPLGYYKDPEKTAETFPTIDGVRYAI  411 (533)
T ss_pred             ccccccccCCCCCCccCCCCccCCCceEEEECCCCCCCCCCCCCeeEEE-eecCccccccCChhhhHHhhccCCCCceEE
Confidence                                    4567788999999999887  6665 556789999998876654      246999


Q ss_pred             ccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHH
Q psy13807        119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIK  198 (204)
Q Consensus       119 TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~  198 (204)
                      |||+++++++|++++.||.||++|++|.+|+|.+||+++.++|+|.+++|++.+++..++.+.+++++.++...+.++++
T Consensus       412 TGD~~~~~~~g~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  491 (533)
T PRK07798        412 PGDRARVEADGTITLLGRGSVCINTGGEKVFPEEVEEALKAHPDVADALVVGVPDERWGQEVVAVVQLREGARPDLAELR  491 (533)
T ss_pred             cCcEEEEcCCCcEEEEccccceEecCCEEeCHHHHHHHHHhCccceeEEEEeccCcccCceEEEEEEECCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888778889999998877777888888


Q ss_pred             HHHhc
Q psy13807        199 TYCKG  203 (204)
Q Consensus       199 ~~l~~  203 (204)
                      +.+++
T Consensus       492 ~~l~~  496 (533)
T PRK07798        492 AHCRS  496 (533)
T ss_pred             HHHhh
Confidence            88875

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=99.96  E-value=5e-27  Score=214.48  Aligned_cols=190  Identities=23%  Similarity=0.358  Sum_probs=152.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc----------c
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------H   71 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------~   71 (204)
                      +.+.++++++|.+.++|++++.+.+...  .       .+++++|.+++||+++++++.+++.+.+|..          +
T Consensus       875 ~~~~i~~~~~t~~~~~p~~l~~l~~~~~--~-------~~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~  945 (1140)
T PRK06814        875 IPELIYDTNATILFGTDTFLNGYARYAH--P-------YDFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETA  945 (1140)
T ss_pred             HHHHHHhcCCEEEEecHHHHHHHHhhcc--c-------ccccceeEEEEcCCcCCHHHHHHHHHHhCCcEEecccccccc
Confidence            4578999999999999999998876531  2       4678999999999999999999999887654          1


Q ss_pred             eEEEEEC-------CCCCcCC-----------CCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEEEecCCe
Q psy13807         72 LIVKVVD-------KKGNIVP-----------MGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGY  130 (204)
Q Consensus        72 ~~v~i~d-------~~g~~~~-----------~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~~~~~g~  130 (204)
                      ..+....       .-|++.|           .++.|||+++|++++.||+++++....   .+|||+|||++++|+||+
T Consensus       946 ~~~~~~~~~~~~~~~vG~p~~g~~~~~~~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~g~~~TGDl~~~d~dG~ 1025 (1140)
T PRK06814        946 PVIALNTPMHNKAGTVGRLLPGIEYRLEPVPGIDEGGRLFVRGPNVMLGYLRAENPGVLEPPADGWYDTGDIVTIDEEGF 1025 (1140)
T ss_pred             ceEEecCCCCCCCCcCCccCCCCeEEEeecCCCCCceEEEEeCCCcchhhcCCCCCCccccCCCCeEecCCEEEECCCCe
Confidence            1111100       1133222           256799999999999999987654322   589999999999999999


Q ss_pred             EEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       131 ~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      +++.||.||++|++|++|+|.|||+++.+++.+.+++|++.+++..++.+++++.   +.+.+.+++++++++
T Consensus      1026 l~~~GR~~d~i~~~G~~v~~~eIE~~l~~~~~v~~~~vv~~~~~~~g~~~~~~~~---~~~~~~~~l~~~~~~ 1095 (1140)
T PRK06814       1026 ITIKGRAKRFAKIAGEMISLAAVEELAAELWPDALHAAVSIPDARKGERIILLTT---ASDATRAAFLAHAKA 1095 (1140)
T ss_pred             EEEEecccCeeeeCCEEECHHHHHHHHHhcCCcccEEEEEcccCCCCceEEEEEc---CCCcCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998888888777654   334567788887764

>PRK08180 feruloyl-CoA synthase; Reviewed

Probab=99.95  E-value=4.7e-28  Score=208.72  Aligned_cols=181  Identities=19%  Similarity=0.211  Sum_probs=138.5

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHH----hC---------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDT----FG---------   68 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~----~g---------   68 (204)
                      +++.++++++|+++++|+++..|++........   ....++++|.+++||+++++++.+++.+.    +|         
T Consensus       296 ~l~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~~---~~~~~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~Y  372 (614)
T PRK08180        296 TLRNLREISPTVYFNVPKGWEMLVPALERDAAL---RRRFFSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGL  372 (614)
T ss_pred             HHHHHHHhCCcEEechHHHHHHHHHHHHhchhh---hhhhccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeee
Confidence            467789999999999999999888754221100   00357899999999999999999998864    23         


Q ss_pred             -Cc--ceEEEEEC-------CCCCcC--------CCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEEE--
Q psy13807         69 -IK--HLIVKVVD-------KKGNIV--------PMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFIL--  125 (204)
Q Consensus        69 -~~--~~~v~i~d-------~~g~~~--------~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~~--  125 (204)
                       .+  +..+....       .-|.++        +.+..|||+++|++++.|||++++.+..   .+|||+|||++++  
T Consensus       373 G~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d~~~~GEi~vrg~~v~~GY~~~p~~t~~~~~~dgw~~TGDlg~~~~  452 (614)
T PRK08180        373 GMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVPVGGKLEVRVKGPNVTPGYWRAPELTAEAFDEEGYYRSGDAVRFVD  452 (614)
T ss_pred             cccccCCceEecccccCCCCcccCccCCcEEEEecCCCCcEEEEecCccchhhcCChhHhHhhcccCCceeccceEEecC
Confidence             22  10010000       013332        2456699999999999999999987765   4799999999999  


Q ss_pred             --ecCCeEEEEeeccceEE-eCceeeC--hHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCC
Q psy13807        126 --HENGYGQVVGRIKDIII-RGGENII--PKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG  189 (204)
Q Consensus       126 --~~~g~~~~~GR~dd~i~-~~G~~v~--~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~  189 (204)
                        |++|+++|.||.+|+++ .+|++++  +.|+|.++..+|.|.+++|++.+++    .+.|+|++.++
T Consensus       453 ~~d~~g~l~i~GR~~d~i~~~~G~~i~~~p~Eie~~l~~~p~V~~a~V~g~~~~----~~~a~V~~~~~  517 (614)
T PRK08180        453 PADPERGLMFDGRIAEDFKLSSGTWVSVGPLRARAVSAGAPLVQDVVITGHDRD----EIGLLVFPNLD  517 (614)
T ss_pred             CcCCCCceEEecchhhhEEcCCCcEecchhhhHHHHhhcCchhheEEEEcCCCC----ceEEEEEcCHH
Confidence              46899999999999888 5798776  7788899999999999999998765    57788888654

>TIGR01923 menE O-succinylbenzoate-CoA ligase

Probab=99.95  E-value=1.2e-26  Score=191.97  Aligned_cols=188  Identities=30%  Similarity=0.442  Sum_probs=151.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCcceEEE------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVK------   75 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~~~~v~------   75 (204)
                      +++.++++++|.+.++|++++.+++...           ..+++|.++++|+++++++.+++.+ +|..-...+      
T Consensus       189 ~~~~l~~~~~t~~~~~P~~l~~l~~~~~-----------~~~~l~~~~~~G~~~~~~~~~~~~~-~~~~~~~~YG~tE~~  256 (436)
T TIGR01923       189 LLEMIANERVTHISLVPTQLNRLLDEGG-----------HNENLRKILLGGSAIPAPLIEEAQQ-YGLPIYLSYGMTETC  256 (436)
T ss_pred             HHHHHHHhCCeEEEeHHHHHHHHHhCcC-----------CCCceEEEEECCCCCCHHHHHHHHH-hCCceeeEecCCccc
Confidence            6789999999999999999999887532           1268999999999999999988765 344300000      


Q ss_pred             --EE----------CCCCCcCC----------CCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEEEecCCeE
Q psy13807         76 --VV----------DKKGNIVP----------MGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYG  131 (204)
Q Consensus        76 --i~----------d~~g~~~~----------~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~~~~g~~  131 (204)
                        ..          ..-|.+++          .++.|||+++++.++.+|+++++.+..  .++||+|||++++++||.+
T Consensus       257 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~TGD~~~~~~dg~~  336 (436)
T TIGR01923       257 SQVTTATPEMLHARPDVGRPLAGREIKIKVDNKEGHGEIMVKGANLMKGYLYQGELTPAFEQQGWFNTGDIGELDGEGFL  336 (436)
T ss_pred             hhccCcCccccccccCCCccCCCcEEEEEeCCCCCceEEEEECCccchhhCCChhhhhhhhcCCCeeccceEEEcCCCCE
Confidence              00          00122221          225699999999999999997766655  5799999999999999999


Q ss_pred             EEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        132 QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       132 ~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      ++.||.||++|++|.++++.+||+++..++.|.++++++.++...+..+.+++++.++  .+...+.+++++
T Consensus       337 ~~~GR~~d~i~~~G~~v~~~~iE~~l~~~~~v~~~~v~~~~~~~~~~~~~~~v~~~~~--~~~~~l~~~l~~  406 (436)
T TIGR01923       337 YVLGRRDDLIISGGENIYPEEIETVLYQHPGIQEAVVVPKPDAEWGQVPVAYIVSESD--ISQAKLIAYLTE  406 (436)
T ss_pred             EEeccccCeEEeCCEeeCHHHHHHHHHhCCCeeEEEEeCCcchhcCCeeEEEEEECCC--CCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999877667888999988753  666777777764

This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.

>PRK08279 long-chain-acyl-CoA synthetase; Validated

Probab=99.95  E-value=1.1e-26  Score=199.63  Aligned_cols=193  Identities=24%  Similarity=0.320  Sum_probs=150.7

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|++++.++.......       ....+++.+  +|+++++++.++|.+.|+..           
T Consensus       280 ~~~~i~~~~~t~~~~~p~l~~~l~~~~~~~~-------~~~~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~  350 (600)
T PRK08279        280 FWDDVRRYRATAFQYIGELCRYLLNQPPKPT-------DRDHRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEG  350 (600)
T ss_pred             HHHHHHHhcceEEeehHHHHHHHHhCCCCcc-------ccCcceeEE--ecCCCCHHHHHHHHHHhCcceeeeeeccccc
Confidence            5778999999999999999998887644333       345567754  47889999999998887643           


Q ss_pred             ce---------------------EEE-----------EECCCC--CcCCCCCeeEEE--EEeCcccccccCCcccccC--
Q psy13807         71 HL---------------------IVK-----------VVDKKG--NIVPMGMCGEVC--YRGYNVMLGYYGEENKILE--  112 (204)
Q Consensus        71 ~~---------------------~v~-----------i~d~~g--~~~~~~~~Gel~--v~~~~~~~~y~~~~~~~~~--  112 (204)
                      +.                     .+.           +.+.++  .+++.|+.|+|+  +.+++++.|| ++++.+..  
T Consensus       351 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~Gel~~~i~~~~~~~GY-~~~~~t~~~~  429 (600)
T PRK08279        351 NVGFINVFNFDGTVGRVPLWLAHPYAIVKYDVDTGEPVRDADGRCIKVKPGEVGLLIGRITDRGPFDGY-TDPEASEKKI  429 (600)
T ss_pred             ceeecccCCCCcccccccccccccceeeeeccCcCceeeCCCCccccCCCCCceeEEEEecCccccccc-CCchhhHHHH
Confidence            00                     011           111122  256788999998  6789999999 76655432  


Q ss_pred             -------CCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCC-CCceEEEEE
Q psy13807        113 -------NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDER-LGEVVVANI  184 (204)
Q Consensus       113 -------~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~-~~~~~~a~v  184 (204)
                             .++||+|||++++++||.+++.||.||+||++|++|+|.|||+++.++|+|.+++|++++.+. .+...++++
T Consensus       430 ~~~~~~~~~~~~~TGDlg~~~~dG~l~~~GR~~d~ik~~G~~i~p~eIE~~l~~~p~V~~a~v~gv~~~~~~~~~~~~~v  509 (600)
T PRK08279        430 LRDVFKKGDAWFNTGDLMRDDGFGHAQFVDRLGDTFRWKGENVATTEVENALSGFPGVEEAVVYGVEVPGTDGRAGMAAI  509 (600)
T ss_pred             hhcccCCCCceEeecceEEEcCCccEEEecccCCeEEECCcccCHHHHHHHHhcCCCcceEEEEEeecCCCCCccceeEE
Confidence                   368999999999999999999999999999999999999999999999999999999998654 344556666


Q ss_pred             EeCCCCCCCHHHHHHHHhcC
Q psy13807        185 ELKPGASLTQDDIKTYCKGK  204 (204)
Q Consensus       185 ~~~~~~~~~~~~l~~~l~~~  204 (204)
                      ++.++...+.++++++|+++
T Consensus       510 v~~~~~~~~~~~l~~~l~~~  529 (600)
T PRK08279        510 VLADGAEFDLAALAAHLYER  529 (600)
T ss_pred             EecCCccCCHHHHHHHHHhh
Confidence            66656667888999988764

>PRK05850 acyl-CoA synthetase; Validated

Probab=99.95  E-value=1.2e-26  Score=198.57  Aligned_cols=183  Identities=25%  Similarity=0.386  Sum_probs=144.4

Q ss_pred             HhHHHHHcCccEEEecHHHHH-HHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC------------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYV-DLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG------------   68 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~-~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g------------   68 (204)
                      +++++++++++.+ .+|+++. .+........  .  ....++++|.+++||+++++++.++|.+.|+            
T Consensus       251 ~~~~i~~~~~~~~-~~p~~~~~~~~~~~~~~~--~--~~~~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  325 (578)
T PRK05850        251 WMQLLASNPHAFS-AAPNFAFELAVRKTSDDD--M--AGLDLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPS  325 (578)
T ss_pred             HHHHHHHcCCeEE-eCCcHHHHHHHHhcchhh--h--cCcchhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCc
Confidence            6788999999865 5565543 3333211110  0  0145788999999999999999999877652            


Q ss_pred             --Cc------------------------------------------------ceEEEEECCC-CCcCCCCCeeEEEEEeC
Q psy13807         69 --IK------------------------------------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGY   97 (204)
Q Consensus        69 --~~------------------------------------------------~~~v~i~d~~-g~~~~~~~~Gel~v~~~   97 (204)
                        .+                                                +..++++|++ +.+++.|+.|||+++|+
T Consensus       326 YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~g~p~~~~~~ivd~~~~~~~~~g~~Gel~v~g~  405 (578)
T PRK05850        326 YGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETGGGTPLVSYGSPRSPTVRIVDPDTCIECPAGTVGEIWVHGD  405 (578)
T ss_pred             cchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCCCCceEEeccCCCCCEEEEEcCCCCcCCCCCCEEEEEEecC
Confidence              11                                                0255677754 78999999999999999


Q ss_pred             cccccccCCcccccC--------------CCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCc
Q psy13807         98 NVMLGYYGEENKILE--------------NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDV  163 (204)
Q Consensus        98 ~~~~~y~~~~~~~~~--------------~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V  163 (204)
                      +++.||+++++.+..              .++||+|||+++++ +|++++.||.+|+||++|++|+|.+||++|.++|.+
T Consensus       406 ~~~~gY~~~~~~t~~~f~~~~~~~~~~~~~~~w~~TGDl~~~~-~G~l~~~GR~~d~i~~~G~~i~p~eIE~~l~~~~~~  484 (578)
T PRK05850        406 NVAAGYWQKPEETERTFGATLVDPSPGTPEGPWLRTGDLGFIS-EGELFIVGRIKDLLIVDGRNHYPDDIEATIQEITGG  484 (578)
T ss_pred             cccccccCChhhhHHHhhcccccccccCCCCCeeeccceeeEE-CCEEEEEcccccEEEECCeecCHHHHHHHHHHhcCC
Confidence            999999999887663              24799999999997 999999999999999999999999999999999985


Q ss_pred             ceEEEEeeeCCCCCceEEEEEEeCCCCCC
Q psy13807        164 VEAQVYGVPDERLGEVVVANIELKPGASL  192 (204)
Q Consensus       164 ~~~~v~~~~~~~~~~~~~a~v~~~~~~~~  192 (204)
                       ++++++++++ .++.++++|++.++...
T Consensus       485 -~~~v~~v~~~-~~~~~~a~v~~~~~~~~  511 (578)
T PRK05850        485 -RVAAISVPDD-GTEKLVAIIELKKRGDS  511 (578)
T ss_pred             -cEEEEEecCC-CceEEEEEEEeccccCc
Confidence             5888888876 67789999998866443

>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional

Probab=99.95  E-value=2.3e-26  Score=191.73  Aligned_cols=185  Identities=28%  Similarity=0.411  Sum_probs=148.5

Q ss_pred             hHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc----------ce
Q psy13807          3 SRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------HL   72 (204)
Q Consensus         3 ~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------~~   72 (204)
                      ++.+  +++|.+.++|+++..++....           ...+++.+++||+++++.+.+++.+. |..          +.
T Consensus       213 ~~~i--~~~t~~~~~P~~~~~l~~~~~-----------~~~~l~~i~~gG~~~~~~~~~~~~~~-g~~~~~~YG~tE~~~  278 (458)
T PRK09029        213 EQAL--AGCTHASLVPTQLWRLLDNRS-----------EPLSLKAVLLGGAAIPVELTEQAEQQ-GIRCWCGYGLTEMAS  278 (458)
T ss_pred             HHHH--hhceeeecChHHHHHHHhccc-----------cCCcceEEEECCCCCCHHHHHHHHHc-CCcEeccccccccCc
Confidence            4455  478999999999998876532           13479999999999999999988753 443          11


Q ss_pred             EEEE--EC---CCCCcCCCCC----eeEEEEEeCcccccccCCcccccC--CCCceeccceEEEecCCeEEEEeeccceE
Q psy13807         73 IVKV--VD---KKGNIVPMGM----CGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDII  141 (204)
Q Consensus        73 ~v~i--~d---~~g~~~~~~~----~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~~~~g~~~~~GR~dd~i  141 (204)
                      ....  .+   .-|.+++.-.    .|||+++|++++.||+++++.+..  .++||+|||++++| +|++++.||++|+|
T Consensus       279 ~~~~~~~~~~~~~G~~~~~~~~~i~~gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~TGD~~~~~-~g~l~~~gR~~d~i  357 (458)
T PRK09029        279 TVCAKRADGLAGVGSPLPGREVKLVDGEIWLRGASLALGYWRQGQLVPLVNDEGWFATRDRGEWQ-NGELTILGRLDNLF  357 (458)
T ss_pred             ceeccCCCCCCCCCCCCCCCEEEEeCCEEEEecCceeeeeecCccccccccCCCccCCCCcEEEe-CCEEEEecccccce
Confidence            0110  01   1244544322    289999999999999998877654  67899999999999 99999999999999


Q ss_pred             EeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807        142 IRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK  204 (204)
Q Consensus       142 ~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  204 (204)
                      |++|.+|+|.+||+++.++|+|.+++|++.+++..++.++++|++..  ..+.++|+++|+++
T Consensus       358 ~~~G~~v~p~eiE~~l~~~~~v~~~~v~~~~~~~~~~~~~a~v~~~~--~~~~~~l~~~~~~~  418 (458)
T PRK09029        358 FSGGEGIQPEEIERVINQHPLVQQVFVVPVADAEFGQRPVAVVESDS--EAAVVNLAEWLQDK  418 (458)
T ss_pred             eeCCEEeCHHHHHHHHhcCCCcceEEEEccCCcccCceEEEEEEcCc--ccCHHHHHHHHHhh
Confidence            99999999999999999999999999999999888889999998763  46778888888763

>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]

Probab=99.95  E-value=3.8e-27  Score=198.93  Aligned_cols=182  Identities=34%  Similarity=0.519  Sum_probs=142.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCc----------------------------------------ccccC
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMP----------------------------------------NIAEE   41 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~----------------------------------------~~~~~   41 (204)
                      +++.+++.+||.+.++|.+|+.+.+.....-+..+                                        ..+..
T Consensus       271 ~~~dl~~~rPt~m~~VPRvwE~i~~~I~~kv~~~~~~~~~if~~a~~~~~~~~~~~~~~~~~~~~~~~~d~LVf~Kir~~  350 (613)
T COG1022         271 LLEDLKEVRPTVMIGVPRVWEKVYKGIMEKVAKAPAVRRKLFRWALKVAYKKISRALLGGGPLSWLLVADRLVFRKIRDA  350 (613)
T ss_pred             HHHHHHHhCCeEEeechHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhhhcccCCcchhhhhhHHHHHHHHHH
Confidence            57889999999999999999987643211100000                                        00011


Q ss_pred             C-CCceEEEEeCCCCCHHHHHHHHHHhCCc------------ceEEE-----EECCCCCcCCC-----CCeeEEEEEeCc
Q psy13807         42 L-SSPVIALTAGAPCSPTLFNKIRDTFGIK------------HLIVK-----VVDKKGNIVPM-----GMCGEVCYRGYN   98 (204)
Q Consensus        42 l-~~l~~~~~~G~~~~~~~~~~~~~~~g~~------------~~~v~-----i~d~~g~~~~~-----~~~Gel~v~~~~   98 (204)
                      + ..+|++++||+++++++..+++.. |++            .+.+.     ..+.-|+++|.     .+.|||+++||.
T Consensus       351 lGgri~~~~sGGa~l~~~~~~f~~~l-Gi~i~eGYGlTEts~~~~v~~~~~~~~gtvG~p~p~~evKI~d~GEilVRG~~  429 (613)
T COG1022         351 LGGRIRYALSGGAPLSPELLHFFRSL-GIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIADDGEILVRGPN  429 (613)
T ss_pred             hCCcEEEEEecCCcCCHHHHHHHHHc-CCCeEEEecccccccceEEccccCcccCCcCCcCCCceEEEccCceEEEecch
Confidence            1 479999999999999999999854 555            11111     11222566653     345999999999


Q ss_pred             ccccccCCcccccC---CCCceeccceEEEecCCeEEEEeeccceEE-eCceeeChHHHHHHHhcCCCcceEEEEeeeCC
Q psy13807         99 VMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIII-RGGENIIPKEIEYVLQTHPDVVEAQVYGVPDE  174 (204)
Q Consensus        99 ~~~~y~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~-~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~  174 (204)
                      +|.|||++|+.+++   .+|||+|||+|.+|++|++.+.||++|+|+ .+|++|.|..||+.+..+|.|..++|++ +..
T Consensus       430 Vm~GYyk~pe~Taeaf~~DGWf~TGDlg~~d~~g~L~i~gRkK~~i~l~~GknIaP~~IE~~l~~~~~I~qi~vvg-~~k  508 (613)
T COG1022         430 VMKGYYKNPEATAEAFTEDGWFRTGDLGELDEDGYLVITGRKKELIKLSNGKNIAPEPIESKLAKSPLIEQICVVG-DDK  508 (613)
T ss_pred             hcchhcCChHHHhhhccccCCcccCceeEEcCCCcEEEeecccceEECCCCcccChHHHHHHHhcCCCeeEEEEEe-cCC
Confidence            99999999999988   699999999999999999999999999999 7999999999999999999999999998 332


Q ss_pred             CCCceEEEEEEeCC
Q psy13807        175 RLGEVVVANIELKP  188 (204)
Q Consensus       175 ~~~~~~~a~v~~~~  188 (204)
                         ..+.|+|++..
T Consensus       509 ---~~~~AlIvp~~  519 (613)
T COG1022         509 ---KFLVALIVPDF  519 (613)
T ss_pred             ---cceEEEEeCCH
Confidence               27888888754

>TIGR01733 AA-adenyl-dom amino acid adenylation domain

Probab=99.95  E-value=1.7e-26  Score=189.40  Aligned_cols=157  Identities=29%  Similarity=0.398  Sum_probs=139.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC-Cc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG-IK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g-~~----------   70 (204)
                      +.++++++++|.+.++|++++.+.+...          ..++++|.+++||+++++++.+++.+.++ ..          
T Consensus       203 ~~~~~~~~~~t~l~~~p~~~~~l~~~~~----------~~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~  272 (408)
T TIGR01733       203 LAALIAEHPVTVLNLTPSLLALLAAALP----------PALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTET  272 (408)
T ss_pred             HHHHHHHcCceEEEeCHHHHHHHHHhhh----------hcccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCce
Confidence            5678899999999999999999988654          24789999999999999999999999877 21          


Q ss_pred             ---------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---------CC
Q psy13807         71 ---------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---------ND  114 (204)
Q Consensus        71 ---------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---------~~  114 (204)
                                                 ++.++|+|+++++++.|+.|||+++++.++.||+++++.+..         .+
T Consensus       273 g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~~Gel~v~~~~~~~gy~~~~~~~~~~~~~~~~~~~~  352 (408)
T TIGR01733       273 TVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDDDLRPVPVGVVGELYIGGPGVARGYLNRPELTAERFVPDPFAGGD  352 (408)
T ss_pred             EEEEEEEEcCccccCCccccccCcccCCceEEEECCCCCCCCCCCceEEEecCccccccccCChhhhhcceeeCCCCCCC
Confidence                                       366778888899999999999999999999999998876654         12


Q ss_pred             C--ceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEE
Q psy13807        115 E--WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQV  168 (204)
Q Consensus       115 ~--~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v  168 (204)
                      +  ||+|||++++|++|++++.||.+|+++++|.+++|.+||+++..+++|.+++|
T Consensus       353 ~~~~~~TGDl~~~d~~g~~~~~gR~~~~i~~~G~~v~~~~ie~~l~~~~~v~~~~v  408 (408)
T TIGR01733       353 GARLYRTGDLVRYLPDGNLEFLGRIDDQVKIRGYRIELGEIEAALLRHPGVREAVV  408 (408)
T ss_pred             CceEEECCceEEEcCCCCEEEeeccCCEEEeCeEEechHHHHHHHhcCcchhhhcC
Confidence            3  99999999999999999999999999999999999999999999999998875

This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.

>PRK07768 long-chain-fatty-acid--CoA ligase; Validated

Probab=99.94  E-value=1.7e-25  Score=190.26  Aligned_cols=183  Identities=30%  Similarity=0.389  Sum_probs=145.5

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHH---hCC---------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDT---FGI---------   69 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~---~g~---------   69 (204)
                      +++++++++++.+..+|..+..+.+........   ...+++++|.++++|+++++.+.+++.+.   +|.         
T Consensus       238 ~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~y  314 (545)
T PRK07768        238 WAELISKYRGTMTAAPNFAYALLARRLRRQAKP---GAFDLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAY  314 (545)
T ss_pred             HHHHHHHhCCEEEECchHHHHHHHHHHhccccc---cCCCchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccc
Confidence            467899999999988888887766543111100   01567899999999999999999888763   221         


Q ss_pred             --c--------------------------------------------------ceEEEEECCCCCcCCCCCeeEEEEEeC
Q psy13807         70 --K--------------------------------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGY   97 (204)
Q Consensus        70 --~--------------------------------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~   97 (204)
                        +                                                  ++.++++|++|++++.++.|||+++++
T Consensus       315 G~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~g~~Gel~v~~~  394 (545)
T PRK07768        315 GMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATKGNTRRLATLGPPLPGLEVRVVDEDGQVLPPRGVGVIELRGE  394 (545)
T ss_pred             cccccceEEEccCCCCCcceeeechhHhhccCceeccCCCCcceEEeccCCCCCCEEEEECCCCCCCCCCCEEEEEEccC
Confidence              0                                                  356788898899999999999999999


Q ss_pred             cccccccCCcccccC--CCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeC--
Q psy13807         98 NVMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPD--  173 (204)
Q Consensus        98 ~~~~~y~~~~~~~~~--~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~--  173 (204)
                      .++.||++.+.....  .++||+|||+++++++|+++++||.+|+||++|.+++|.+||+.+..+|+|.+++|++++.  
T Consensus       395 ~~~~gy~~~~~~~~~~~~~g~~~TGDl~~~~~~g~l~~~GR~~d~i~~~G~~v~~~eiE~~l~~~~~v~~~~vv~~~~~~  474 (545)
T PRK07768        395 SVTPGYLTMDGFIPAQDADGWLDTGDLGYLTEEGEVVVCGRVKDVIIMAGRNIYPTDIERAAARVEGVRPGNAVAVRLDA  474 (545)
T ss_pred             cccccccCCCCCcccccCCCeeeccceEEEecCCEEEEEccccceEEECCEecCHHHHHHHHHhCcccccceEEEEEecC
Confidence            999999986554433  5789999999999999999999999999999999999999999999999999988877653  


Q ss_pred             CCCCceEEEEEEeC
Q psy13807        174 ERLGEVVVANIELK  187 (204)
Q Consensus       174 ~~~~~~~~a~v~~~  187 (204)
                      ...+...++++...
T Consensus       475 ~~~~~~~~~~v~~~  488 (545)
T PRK07768        475 GHSREGFAVAVESN  488 (545)
T ss_pred             CCCceEEEEEEEec
Confidence            33344455555443

>PRK12582 acyl-CoA synthetase; Provisional

Probab=99.94  E-value=1.4e-26  Score=199.98  Aligned_cols=171  Identities=19%  Similarity=0.164  Sum_probs=132.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh----C---------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF----G---------   68 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~----g---------   68 (204)
                      +++.++++++|+++++|++++.|++.......   .....+++||.+++||+++++++.+++.+.+    |         
T Consensus       308 ~~~~i~~~~~t~~~~vP~~~~~l~~~~~~~~~---~~~~~~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~Y  384 (624)
T PRK12582        308 TIRNLREISPTVYGNVPAGYAMLAEAMEKDDA---LRRSFFKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGY  384 (624)
T ss_pred             HHHHHHhcCCeEEeccCHHHHHHHHHHhhCHH---HHHHHhhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEecc
Confidence            35668899999999999999988764322110   0003468999999999999999999998752    2         


Q ss_pred             -Cc--ceEEEE-------ECCCCCc--------CCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEEE-e
Q psy13807         69 -IK--HLIVKV-------VDKKGNI--------VPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFIL-H  126 (204)
Q Consensus        69 -~~--~~~v~i-------~d~~g~~--------~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~~-~  126 (204)
                       .+  +..+..       ...-|.+        ++.|+.|||+++|++++.|||++++.+..   .+|||+|||++++ |
T Consensus       385 G~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~~G~~GEl~vrg~~v~~GY~~~p~~t~~~f~~dgw~~TGDlg~~~d  464 (624)
T PRK12582        385 GATETAPTTTGTHWDTERVGLIGLPLPGVELKLAPVGDKYEVRVKGPNVTPGYHKDPELTAAAFDEEGFYRLGDAARFVD  464 (624)
T ss_pred             ccccccceeecccCCCCCCCCCCcCCCCcEEEEccCCCceEEEEECCcccccccCCccchhhhcCccCCccccceEEecC
Confidence             22  100000       0111443        34688899999999999999999988765   5799999999998 4


Q ss_pred             ---cCCeEEEEeeccceEE-eCceeeChHHHH--HHHhcCCCcceEEEEeeeCCC
Q psy13807        127 ---ENGYGQVVGRIKDIII-RGGENIIPKEIE--YVLQTHPDVVEAQVYGVPDER  175 (204)
Q Consensus       127 ---~~g~~~~~GR~dd~i~-~~G~~v~~~~ie--~~l~~~~~V~~~~v~~~~~~~  175 (204)
                         ++|+++|.||.+|+++ .+|++|+|.+||  .++.+||.|.+++|++.+++.
T Consensus       465 ~~~~~g~l~i~GR~~d~i~~~~G~~i~p~~iE~e~~l~~~p~V~~a~VvG~~~~~  519 (624)
T PRK12582        465 PDDPEKGLIFDGRVAEDFKLSTGTWVSVGTLRPDAVAACSPVIHDAVVAGQDRAF  519 (624)
T ss_pred             CcCCCCceEEeccchhhEecCCCcEechHHHHHHHHHhcCcchheEEEEcCCCCc
Confidence               4699999999999999 579999999885  688999999999999987764

>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]

Probab=99.93  E-value=3.9e-25  Score=182.00  Aligned_cols=140  Identities=34%  Similarity=0.585  Sum_probs=120.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC-c----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI-K----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~-~----------   70 (204)
                      +++.++++++|.+.++|++++.+++..+...   .....+++++|.++++|+++++++.+++++.++. .          
T Consensus       239 ~~~~i~~~~~t~~~~~p~~l~~l~~~~~~~~---~~~~~~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~  315 (417)
T PF00501_consen  239 LLELISRYKPTILFAVPSMLEALLQSPEEKT---KISKKDLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTET  315 (417)
T ss_dssp             HHHHHHHHTESEEEEEHHHHHHHHHHHHTTH---HGTTTTGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGG
T ss_pred             chhcccccccccccccccccccccccccccc---cccccccccccccccccccCChhhccccccccccccceeccccccc
Confidence            5789999999999999999999988543320   0000468889999999999999999999999987 3          


Q ss_pred             ------------------------ceEEEEECCC-CCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccce
Q psy13807         71 ------------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDF  122 (204)
Q Consensus        71 ------------------------~~~v~i~d~~-g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~  122 (204)
                                              ++.++++|++ +++++.|+.|||+++|++++.||+++++.+..   .+|||+|||+
T Consensus       316 ~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~~~g~~Gei~i~~~~~~~gy~~~~~~~~~~~~~~~~~~TGD~  395 (417)
T PF00501_consen  316 GSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPLPPGEPGEIVIRGPNVFSGYYNDPELTAEAFIDDGWYRTGDL  395 (417)
T ss_dssp             SSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBESTTSEEEEEEESTTSBSEETTBHHHHHHHEETTSEEEEEEE
T ss_pred             ceeeecccccccccccccccccccccccccccccccccccccccccccccCCccceeeeccccccccccccccceecceE
Confidence                                    7899999998 99999999999999999999999998877665   3579999999


Q ss_pred             EEEecCCeEEEEeeccceEEeC
Q psy13807        123 FILHENGYGQVVGRIKDIIIRG  144 (204)
Q Consensus       123 ~~~~~~g~~~~~GR~dd~i~~~  144 (204)
                      |++|+||+++++||.||+||++
T Consensus       396 g~~d~~G~~~~~GR~~~~i~~~  417 (417)
T PF00501_consen  396 GRLDEDGYLYILGRSDDMIKVR  417 (417)
T ss_dssp             EEEETTSEEEEEEEGSCEEEET
T ss_pred             EEECCCCeEEEEEeeCCEEEeC
Confidence            9999999999999999999974

This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....

>KOG1256|consensus

Probab=99.93  E-value=7.2e-25  Score=184.02  Aligned_cols=185  Identities=28%  Similarity=0.419  Sum_probs=148.4

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccC----CC----------------------CCCC--ccc---------ccC-CC
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQ----PL----------------------TEEM--PNI---------AEE-LS   43 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~----~~----------------------~~~~--~~~---------~~~-l~   43 (204)
                      +.+.+++.+||.+.++|.+|+.+.....    ..                      +...  ...         ... -.
T Consensus       340 l~~dlk~lkPT~f~~VPRVl~riye~I~~~~~~sgflkr~l~~~A~~~k~~~~~~~G~~~~~~~~~D~lVf~KI~~~LGg  419 (691)
T KOG1256|consen  340 LTDDLKELKPTVFPGVPRVLERIYEGIQKQVQKSGFLKRKLFNFAMAYKLEHRLMKGKSRSRDRFADKLVFHKIKQSLGG  419 (691)
T ss_pred             HHHHHHHhCCcEEeccHhHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHhhCCCCcccchHHHHHHHHHHHHHhcC
Confidence            3466899999999999999987753221    00                      0000  000         000 05


Q ss_pred             CceEEEEeCCCCCHHHHHHHHHHhCCc--------------------------------ceEEEEECC-CCCcCCCCCee
Q psy13807         44 SPVIALTAGAPCSPTLFNKIRDTFGIK--------------------------------HLIVKVVDK-KGNIVPMGMCG   90 (204)
Q Consensus        44 ~l~~~~~~G~~~~~~~~~~~~~~~g~~--------------------------------~~~v~i~d~-~g~~~~~~~~G   90 (204)
                      ++|.+++|++|+++++...++..+|+.                                ++.++++|. +-+.-+.+..|
T Consensus       420 ~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~~~~G  499 (691)
T KOG1256|consen  420 NVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDADGSKG  499 (691)
T ss_pred             ceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCcCCCcc
Confidence            688899999999999999999888766                                667777663 23444566789


Q ss_pred             EEEEEeCcccccccCCcccccC---CCCceeccceEEEecCCeEEEEeeccceEE-eCceeeChHHHHHHHhcCCCcceE
Q psy13807         91 EVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIII-RGGENIIPKEIEYVLQTHPDVVEA  166 (204)
Q Consensus        91 el~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~-~~G~~v~~~~ie~~l~~~~~V~~~  166 (204)
                      ||+++|++++.||+++|+.+.+   .+||++|||+|+++++|.+.+.||.++++| ..|++|.|..||++..+.+.|...
T Consensus       500 EIcirG~~Vf~GYyK~p~~T~e~ideDGWLhTGDiG~~~p~G~l~IidRkK~ifklaqGEyVaPe~IEniy~~~~~V~qi  579 (691)
T KOG1256|consen  500 EICVRGPNVFMGYYKDPEKTAEAIDEDGWLHTGDIGEWDPNGTLKIIDRKKNIFKLAQGEYVAPEKIENIYKRSLPVQQI  579 (691)
T ss_pred             eEEEecchhceeccCChHHHhhhhccccccccccceeECCCccEEEEecccceEEcCCCCccChHHHHHHHhcCCceEEE
Confidence            9999999999999999999988   899999999999999999999999999999 789999999999999999999999


Q ss_pred             EEEeeeCCCCCceEEEEEEeCCC
Q psy13807        167 QVYGVPDERLGEVVVANIELKPG  189 (204)
Q Consensus       167 ~v~~~~~~~~~~~~~a~v~~~~~  189 (204)
                      +|.+-+.   ...++|+|++++.
T Consensus       580 ~V~g~s~---~~~LvaiVvpd~e  599 (691)
T KOG1256|consen  580 FVLGDSL---RSFLVAIVVPDPE  599 (691)
T ss_pred             EEECCcc---hhcEEEEEecChh
Confidence            9997643   2489999998654

>PRK08308 acyl-CoA synthetase; Validated

Probab=99.92  E-value=1.5e-23  Score=172.80  Aligned_cols=174  Identities=25%  Similarity=0.339  Sum_probs=136.6

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHH-------hCCcceE-
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDT-------FGIKHLI-   73 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~-------~g~~~~~-   73 (204)
                      +++.++++++|.++++|++++.+.+...           ...+++.++++|+++++++.+++.+.       ||.+... 
T Consensus       182 ~~~~l~~~~~t~~~~~P~~~~~l~~~~~-----------~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~  250 (414)
T PRK08308        182 ALNILRNTPQHILYAVPLMLHILGRLLP-----------GTFQFHAVMTSGTPLPEAWFYKLRERTTYMMQQYGCSEAGC  250 (414)
T ss_pred             HHHHHHHhCCeEEEcCHHHHHHHHhcCC-----------ccccccEEEEccCCCCHHHHHHHHHhCChhhhccCccccCC
Confidence            5788999999999999999999887532           12368889999999999999887654       3433110 


Q ss_pred             EEEE-C-----CCCCcCC---------CCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEecCCeEEEEeecc
Q psy13807         74 VKVV-D-----KKGNIVP---------MGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENGYGQVVGRIK  138 (204)
Q Consensus        74 v~i~-d-----~~g~~~~---------~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~~g~~~~~GR~d  138 (204)
                      +.+. +     .-|.++|         .++.|+|++++                .++||+|||++++++||+++++||.|
T Consensus       251 ~~~~~~~~~~~~~G~p~~~~~~~~~~~~~~~gel~v~~----------------~~~~~~TGDl~~~~~dg~l~~~GR~~  314 (414)
T PRK08308        251 VSICPDMKSHLDLGNPLPHVSVSAGSDENAPEEIVVKM----------------GDKEIFTKDLGYKSERGTLHFMGRMD  314 (414)
T ss_pred             eeecCCCCCCCccCccCCCeEEEEecCCCCCceEEEEc----------------CCceEECCceEEECCCccEEEecccC
Confidence            0110 0     1133333         34456666643                25799999999999999999999999


Q ss_pred             ceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807        139 DIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK  204 (204)
Q Consensus       139 d~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  204 (204)
                      |++|++|.+|+|.+||+++.++|+|.+++|++.+++..++.+.++++..+  ..+.++++++|+++
T Consensus       315 ~~ik~~G~~v~p~eIE~~l~~~~~v~~a~v~~~~~~~~~~~~~~~v~~~~--~~~~~~l~~~l~~~  378 (414)
T PRK08308        315 DVINVSGLNVYPIEVEDVMLRLPGVQEAVVYRGKDPVAGERVKAKVISHE--EIDPVQLREWCIQH  378 (414)
T ss_pred             CeEEECCEEECHHHHHHHHHhCCCeeEEEEEeccCCCCCceEEEEEEeCC--CCCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999888889989988764  46778888888753

>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase

Probab=99.92  E-value=2.2e-23  Score=172.42  Aligned_cols=173  Identities=19%  Similarity=0.341  Sum_probs=135.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.|+++++|+++++|+++..|++......     ......++|.++++|+++++++.+.+.+.||++           
T Consensus       159 ~~~~i~~~~~t~l~~~Ps~l~~L~~~~~~~~-----~~~~~~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~  233 (422)
T TIGR02155       159 QVQLIQDFKPDIIMVTPSYMLNLLEELKRMG-----IDPAQTSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVI  233 (422)
T ss_pred             HHHHHHHHCCCEEEEcHHHHHHHHHHHHHcC-----CCcccCceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhc
Confidence            6789999999999999999999887643222     002235899999999999999999998887654           


Q ss_pred             --------------------ceEEEEECC-CCCcCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEecC-
Q psy13807         71 --------------------HLIVKVVDK-KGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHEN-  128 (204)
Q Consensus        71 --------------------~~~v~i~d~-~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~~-  128 (204)
                                          .+.++++|+ +|.++++|+.|+|++++.....          ...+||+|||+++++++ 
T Consensus       234 ~~~~~~~~~~~~~g~~~~~~~~~~eivd~~~g~~v~~Ge~Gelvvt~~~~~~----------~p~~ry~TGDl~~~~~~~  303 (422)
T TIGR02155       234 GPGVAMECVETQDGLHIWEDHFYPEIIDPHTGEVLPDGEEGELVFTTLTKEA----------LPVIRYRTRDLTRLLPGT  303 (422)
T ss_pred             CCceeecccccCCCceEecCeeEEEEECCCCCCCCCCCCeeEEEEecCCccc----------cceeeEEcCcEEEEECCC
Confidence                                134458885 6899999999999998753210          02468999999999876 


Q ss_pred             C-----eEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCC
Q psy13807        129 G-----YGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG  189 (204)
Q Consensus       129 g-----~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~  189 (204)
                      |     .+++.||.+|+|+++|.+|+|.+||+++..+|+|.....+........+.+.++|+..++
T Consensus       304 Gr~~~~~~~i~GR~~d~i~~~G~~v~p~eie~~l~~~~~v~~~~q~~~~~~~~~~~~~~~v~~~~~  369 (422)
T TIGR02155       304 ARTMRRMDRITGRSDDMLIIRGVNVFPTQLEEVILKMDELSPHYQLELTRNGHMDELTLKVELKPE  369 (422)
T ss_pred             CCcccccccccCccCCeEEECCEEECHHHHHHHHHhCcCcCCCEEEEEEcCCCccEEEEEEEEecC
Confidence            4     468999999999999999999999999999999985554545544444577777777643

Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.

>KOG1180|consensus

Probab=99.92  E-value=4.1e-25  Score=179.58  Aligned_cols=143  Identities=30%  Similarity=0.447  Sum_probs=124.1

Q ss_pred             CCceEEEEeCCCCCHHHHHHHHHHhCCc--------------------------------ceEEEEEC-CCCCcCCCCC-
Q psy13807         43 SSPVIALTAGAPCSPTLFNKIRDTFGIK--------------------------------HLIVKVVD-KKGNIVPMGM-   88 (204)
Q Consensus        43 ~~l~~~~~~G~~~~~~~~~~~~~~~g~~--------------------------------~~~v~i~d-~~g~~~~~~~-   88 (204)
                      .+||.+++||+|+++++.+.+.-.++++                                -+.++++| ++|.-.+.+. 
T Consensus       402 G~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~P  481 (678)
T KOG1180|consen  402 GNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKP  481 (678)
T ss_pred             CceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCC
Confidence            5799999999999999999999888766                                45667776 3344444444 


Q ss_pred             -eeEEEEEeCcccccccCCcccccC----CCC--ceeccceEEEecCCeEEEEeeccceEE-eCceeeChHHHHHHHhcC
Q psy13807         89 -CGEVCYRGYNVMLGYYGEENKILE----NDE--WFPSGDFFILHENGYGQVVGRIKDIII-RGGENIIPKEIEYVLQTH  160 (204)
Q Consensus        89 -~Gel~v~~~~~~~~y~~~~~~~~~----~~~--~~~TGD~~~~~~~g~~~~~GR~dd~i~-~~G~~v~~~~ie~~l~~~  160 (204)
                       .||||++|+.+..||+++++.++.    .+|  ||+|||+|++.+||.+.++.|++|.+| .+|+.|+++-+|.+++..
T Consensus       482 PrGEI~i~G~~vt~gY~kn~ekT~e~ft~~~G~~WF~TGDIGe~~pdG~LkIIDRKKdLVKlq~GEYIsL~KvEa~l~s~  561 (678)
T KOG1180|consen  482 PRGEILIGGPNVTMGYYKNEEKTKEDFTVEDGQRWFRTGDIGEFHPDGCLKIIDRKKDLVKLQNGEYISLGKVEAALRSS  561 (678)
T ss_pred             CCceEEecCCccChhhhCChhhhhhhceecCCcEEEeccccceecCCCcEEEeechhhhhhhcccceeehHHHHHHHhcC
Confidence             699999999999999999999887    366  999999999999999999999999999 799999999999999999


Q ss_pred             CCcceEEEEeeeCCCCCceEEEEEEeCC
Q psy13807        161 PDVVEAQVYGVPDERLGEVVVANIELKP  188 (204)
Q Consensus       161 ~~V~~~~v~~~~~~~~~~~~~a~v~~~~  188 (204)
                      |.|+..+|.+-+..   .-++++||++.
T Consensus       562 p~V~NICvyAd~~~---s~~VaiVVPn~  586 (678)
T KOG1180|consen  562 PYVDNICVYADSNK---SKPVAIVVPNQ  586 (678)
T ss_pred             cchhheEEeccccc---ceeEEEEcCCc
Confidence            99999999976543   37899999864

>KOG1179|consensus

Probab=99.85  E-value=1.1e-19  Score=148.49  Aligned_cols=194  Identities=23%  Similarity=0.303  Sum_probs=161.1

Q ss_pred             CHhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc----------
Q psy13807          1 MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----------   70 (204)
Q Consensus         1 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----------   70 (204)
                      +||+...+|++|++...--++++|+..+..+.       ..-+++|.++  |..+.+++++.|.++||..          
T Consensus       322 ~FW~DC~k~~~Tv~QYIGElcRYLl~~p~~~~-------er~HkVRla~--GNGLR~diW~~Fv~RFg~~~IgE~YgaTE  392 (649)
T KOG1179|consen  322 NFWDDCRKYNVTVIQYIGELCRYLLNQPPSPE-------ERQHKVRLAY--GNGLRPDIWQQFVKRFGIIKIGEFYGATE  392 (649)
T ss_pred             hhHHHHHHhCCeeeehHHHHHHHHHcCCCChh-------hcCceEEEEe--cCCCCchHHHHHHHHcCCCeEEEEecccc
Confidence            47899999999999999999999999887666       5678899888  8889999999999999976          


Q ss_pred             --------------------------ceEEE---------EECCCC--CcCCCCCeeEEEEE----eC-cccccccCCcc
Q psy13807         71 --------------------------HLIVK---------VVDKKG--NIVPMGMCGEVCYR----GY-NVMLGYYGEEN  108 (204)
Q Consensus        71 --------------------------~~~v~---------i~d~~g--~~~~~~~~Gel~v~----~~-~~~~~y~~~~~  108 (204)
                                                .+++-         +.|++|  .+|++|++|.++-+    .| ..+.||.+...
T Consensus       393 gn~~~~N~d~~vGA~G~~~~~~~~l~p~~LIk~D~~t~E~iRd~~G~Ci~~~~GEpGlLv~~i~~k~P~~~F~GY~g~~~  472 (649)
T KOG1179|consen  393 GNSNLVNYDGRVGACGFMSRLLKLLYPFRLIKVDPETGEPIRDSQGLCIPCPPGEPGLLVGKIVQKNPLRSFLGYAGPKK  472 (649)
T ss_pred             CcceeeeecCccccccchhhhhhhccceEEEEecCCCCceeecCCceEEECCCCCCceEEEEeccCCchhhhccccCchh
Confidence                                      11111         234443  47889999977643    23 34889999766


Q ss_pred             cccC---------CCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCC-CCc
Q psy13807        109 KILE---------NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDER-LGE  178 (204)
Q Consensus       109 ~~~~---------~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~-~~~  178 (204)
                      .+..         .|-||.|||+-.+|+.|++||..|..|...+.|++|++.|||++|....+++|+.|+|+.-+. .|.
T Consensus       473 ~t~kKl~rDVFkkGD~~f~tGDlLv~D~~GylYF~DRtGDTFRWKGENVsTtEVe~~l~~~~~~~dv~VYGV~VP~~EGR  552 (649)
T KOG1179|consen  473 ATEKKLLRDVFKKGDVYFNTGDLLVADELGYLYFKDRTGDTFRWKGENVSTTEVEDVLSALDFLQDVNVYGVTVPGYEGR  552 (649)
T ss_pred             hhhhhhHHhhhccCcEEEeeCcEEEEecCCcEEEeccCCCceeecCCcccHHHHHHHHhhhccccceeEEEEecCCccCc
Confidence            6654         577999999999999999999999999999999999999999999999999999999998644 556


Q ss_pred             eEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        179 VVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       179 ~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      .=.|.|++.++.+.+.+.+-+.+++
T Consensus       553 aGMAaI~~~p~~~~d~~~l~~~l~~  577 (649)
T KOG1179|consen  553 AGMAAIVLDPTTEKDLEKLYQHLRE  577 (649)
T ss_pred             cceEEEEecCcccchHHHHHHHHHh
Confidence            7778888888888888887776654

>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family

Probab=99.81  E-value=2.1e-18  Score=140.85  Aligned_cols=168  Identities=19%  Similarity=0.240  Sum_probs=112.3

Q ss_pred             cEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC-cceEEEEECCCCCcC---CCC
Q psy13807         12 TVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI-KHLIVKVVDKKGNIV---PMG   87 (204)
Q Consensus        12 t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~-~~~~v~i~d~~g~~~---~~~   87 (204)
                      |++.++|++++.+.+..           ..+++++. ++||+++++++++++.+. +. .-+..+-..+.+...   +++
T Consensus       186 t~~~~~P~~l~~l~~~~-----------~~l~slr~-i~gGa~l~~~l~~~~~~~-g~~~v~~~YG~TEt~~i~~~~~~~  252 (386)
T TIGR02372       186 DLIVGTPFIWEQLADLD-----------YRLPGVVG-VSSGAPSTAATWRCLLAA-GLARLLEVYGATETGGIGLREAPD  252 (386)
T ss_pred             CEEEECcHHHHHHHhhC-----------cCCCccee-EecCCCCCHHHHHHHHHh-cccchhheeccccccccccccCCC
Confidence            79999999999887642           24566775 678999999999999865 43 111111112211100   011


Q ss_pred             CeeEEEEEeCcccccccCCccccc-CCCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceE
Q psy13807         88 MCGEVCYRGYNVMLGYYGEENKIL-ENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEA  166 (204)
Q Consensus        88 ~~Gel~v~~~~~~~~y~~~~~~~~-~~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~  166 (204)
                      ..|...   |...  +.. ++... ....|++|||++++|++|+|+|.||+||+||++|++|+|.+||+++.++|+|.++
T Consensus       253 ~~~~~~---p~~~--~~~-~~~~~~g~~~~~~tgD~g~~d~~G~l~i~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~~  326 (386)
T TIGR02372       253 DPFRLL---PDLA--CFA-DTLSSAGLARRLDLQDRLAWDKDGGFTILGRKDEILQVGGVNVSPGHVRDILERNPRVRAA  326 (386)
T ss_pred             CCcccC---CCcc--ccC-CCccCCCccceeecCceEEEcCCCcEEEecccCCEEEECCEEEcHHHHHHHHHcCCCceEE
Confidence            111110   0000  000 00000 0234799999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeeCCCCCceEEEEEEeCCCCCCC--HHHHHHHHhc
Q psy13807        167 QVYGVPDERLGEVVVANIELKPGASLT--QDDIKTYCKG  203 (204)
Q Consensus       167 ~v~~~~~~~~~~~~~a~v~~~~~~~~~--~~~l~~~l~~  203 (204)
                      +|..     .++.+.++|++.++...+  .+++++++++
T Consensus       327 ~v~~-----~g~~~~a~vv~~~~~~~~~~~~~l~~~~~~  360 (386)
T TIGR02372       327 AVRL-----DGRRLKAFIVVAEDADEAELEIELRATAAR  360 (386)
T ss_pred             EEEc-----CCceEEEEEEECCCCChHHHHHHHHHHHHH
Confidence            8862     346889999987654332  4577777664

Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.

>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]

Probab=99.81  E-value=4e-18  Score=137.99  Aligned_cols=172  Identities=24%  Similarity=0.314  Sum_probs=140.5

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      -+++|+++++|++.++|+++..|.+..+.....     ..-.+++.+++|+|+++++..+.+.+.||+.           
T Consensus       174 ~~~l~~df~~tvI~~tps~~l~lae~~~~~G~~-----~~~~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~  248 (438)
T COG1541         174 QLELMKDFKPTVIAATPSYLLYLAEEAEEEGID-----PDKLSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGF  248 (438)
T ss_pred             HHHHHHhcCCcEEEEChHHHHHHHHHHHHcCCC-----hhhcceeEEEEecccCCHHHHHHHHHHhCCceeecccccccc
Confidence            368999999999999999999999887655311     4567899999999999999999999998887           


Q ss_pred             ------------------ceEEEEECCC-CCcCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEecC---
Q psy13807         71 ------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHEN---  128 (204)
Q Consensus        71 ------------------~~~v~i~d~~-g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~~---  128 (204)
                                        ...++++||+ |+.++.|..|||++++-.--..-+-          -|+|||+..+.++   
T Consensus       249 g~g~~eC~~~~glhi~eD~~~~Ei~dP~t~e~l~dge~GelV~T~L~~~~~PlI----------RYrtgDit~i~~~~C~  318 (438)
T COG1541         249 GPGAGECTERNGLHIWEDHFIFEIVDPETGEQLPDGERGELVITTLTKEGMPLI----------RYRTGDITVILSDPCG  318 (438)
T ss_pred             CCcccccccccCCCcchhhceeeeecCCcCccCCCCCeeEEEEEeccccCcceE----------EEEcCCeeEecccCCC
Confidence                              5677899976 9999999999999987642111111          1899999998653   


Q ss_pred             -Ce-----EEEEeeccceEEeCceeeChHHHHHHHhcCCCcc-eEEEEeeeCCCCCceEEEEEEeCCC
Q psy13807        129 -GY-----GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVV-EAQVYGVPDERLGEVVVANIELKPG  189 (204)
Q Consensus       129 -g~-----~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~-~~~v~~~~~~~~~~~~~a~v~~~~~  189 (204)
                       |+     -.+.||.||++.+.|.+|+|..||+++.+++.+. +..++... +.....+.+.|++.++
T Consensus       319 cGr~~~ri~~I~GR~dD~l~~~G~~vfp~~ie~~l~~~~~~~~~yqi~~~~-~~~~d~L~V~vE~~~~  385 (438)
T COG1541         319 CGRTHRRIERIEGRSDDMLIVRGVNVFPSQIERVLLQIPEVTPHYQIILTR-NGGLDELTVRVELENE  385 (438)
T ss_pred             CCCccccccccCcccccEEEECCEEeCHHHHHHHHhcccCCCceEEEEEec-CCCCceEEEEEEecCc
Confidence             32     3899999999999999999999999999999998 66666655 4455678888888764

>TIGR03335 F390_ftsA coenzyme F390 synthetase

Probab=99.81  E-value=8.9e-18  Score=139.85  Aligned_cols=172  Identities=14%  Similarity=0.116  Sum_probs=124.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      .+++|+++++|.+.++|+.+..+.+.......     .....++|.+++||+++++++.+++.+.||+.           
T Consensus       168 ~~~~i~~~~~t~l~~~ps~ll~La~~~~~~g~-----~~~~~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~  242 (445)
T TIGR03335       168 PIRIIESYRPTGIVASVFKLLRLARRMKAEGI-----DPAESSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGT  242 (445)
T ss_pred             HHHHHHHhCCCEEEECHHHHHHHHHHHHHcCC-----CcccCcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhh
Confidence            46789999999999999998877765432220     02346899999999999999999999888765           


Q ss_pred             ----------------ceEEEEECCC-CCcCCCCCeeEEEEEeCccc-----ccccCCcccccCCCCceeccceEEEe--
Q psy13807         71 ----------------HLIVKVVDKK-GNIVPMGMCGEVCYRGYNVM-----LGYYGEENKILENDEWFPSGDFFILH--  126 (204)
Q Consensus        71 ----------------~~~v~i~d~~-g~~~~~~~~Gel~v~~~~~~-----~~y~~~~~~~~~~~~~~~TGD~~~~~--  126 (204)
                                      .+.++|+|++ +.++|+|+.|||++++....     .-.++           |+|||++++.  
T Consensus       243 ~~~~c~~~~g~h~~~d~~~vEIvDp~~~~~vp~Ge~GELvvT~L~~~~~r~~~PliR-----------YrtgD~~~~~~~  311 (445)
T TIGR03335       243 MCGECQAVAGLHVPEDLVHLDVYDPRHQRFLPDGECGRIVLTTLLKPGERCGSLLIN-----------YDTEDTTVVISR  311 (445)
T ss_pred             heEEecCCCCccccCCceEEEEEcCCCCCCCcCCCceEEEEEecCCCCccCCceEEE-----------eecCceEEEecC
Confidence                            3568899988 46799999999999986431     11121           8999999863  


Q ss_pred             cC---C----eEEEEeeccceEEeCceeeChHHHHHHHhcC---CCcc-eEEEEeeeCCCCCceEEEEEEeCCC
Q psy13807        127 EN---G----YGQVVGRIKDIIIRGGENIIPKEIEYVLQTH---PDVV-EAQVYGVPDERLGEVVVANIELKPG  189 (204)
Q Consensus       127 ~~---g----~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~---~~V~-~~~v~~~~~~~~~~~~~a~v~~~~~  189 (204)
                      +.   |    ++...||+||+++++|.+|+|.+||++|.++   +++. +..++..........+...|+..++
T Consensus       312 ~~C~CGr~~~r~~~~gR~dd~~~~~g~~~~p~~ie~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~e~~~~  385 (445)
T TIGR03335       312 DRCPCGRTHMRILNPEREAETIWISGVPFNRVDVERAVFQRENMDSLTGEYEAFLYGEEEGEITLRVSLECEDK  385 (445)
T ss_pred             CCCCCCCCcceeCCCcccCceEEECCEEeCHHHHHHHHhccCCCCCCCccEEEEEecCCCCCceEEEEEEecCc
Confidence            21   3    2445699999999999999999999999994   5554 3334332222222245555666544

This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.

>PRK09188 serine/threonine protein kinase; Provisional

Probab=99.72  E-value=5.4e-17  Score=130.79  Aligned_cols=84  Identities=17%  Similarity=0.210  Sum_probs=76.9

Q ss_pred             CCCceeccceEEE-ecCCeEEEEeeccceEEeCc---eeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCC
Q psy13807        113 NDEWFPSGDFFIL-HENGYGQVVGRIKDIIIRGG---ENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKP  188 (204)
Q Consensus       113 ~~~~~~TGD~~~~-~~~g~~~~~GR~dd~i~~~G---~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~  188 (204)
                      .+|||+|||+|++ |++|+|+|.||.+     +|   .+|+|. ||++|.+||+|.+|+|++++++..|+.++|||++.+
T Consensus       207 ~dgW~~TGDlg~~~d~dG~l~~~gR~~-----~G~~i~nV~p~-IE~~L~~hp~V~eaaVvgvpd~~~ge~v~A~Vv~~~  280 (365)
T PRK09188        207 SRIWLATGKKVYNFITRGLFSWSDGEG-----TGDRIDNEAPA-IQAALKSDPAVSDVAIALFSLPAKGVGLYAFVEAEL  280 (365)
T ss_pred             cCcEEeCCCEEEEEcCCCeEEEEecCc-----CCcCceeeCHH-HHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECC
Confidence            6899999999998 6999999999997     78   799999 999999999999999999999999999999999863


Q ss_pred             CCCCCHHHHHHHHhcC
Q psy13807        189 GASLTQDDIKTYCKGK  204 (204)
Q Consensus       189 ~~~~~~~~l~~~l~~~  204 (204)
                        ..+.++++++|+++
T Consensus       281 --~~~~~el~~~l~~~  294 (365)
T PRK09188        281 --PADEKSLRARLAGA  294 (365)
T ss_pred             --CCCHHHHHHHHHhh
Confidence              46788999998864

>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.70  E-value=3.5e-16  Score=135.79  Aligned_cols=155  Identities=19%  Similarity=0.231  Sum_probs=130.5

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC----------Cc-
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG----------IK-   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g----------~~-   70 (204)
                      +.+.+.++++|.+..+|..+..++........     ......++.+++||++++..+...+.....          .+ 
T Consensus       449 l~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~~-----~~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe  523 (642)
T COG1020         449 LLELLEAQGITVLLLVPLLLRLLLLAALAPDL-----ISPCERLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTE  523 (642)
T ss_pred             HHHHHHHcCCEEEEecHHHHHHHHhchhhccc-----cCCcccccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccH
Confidence            56778999999999999999988876222210     023345999999999999999988765432          21 


Q ss_pred             -------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CC-Cceeccce
Q psy13807         71 -------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--ND-EWFPSGDF  122 (204)
Q Consensus        71 -------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~-~~~~TGD~  122 (204)
                                               +..+.+.|..++++|.|..||+++.|.++.+||+++++.+..  .. .+|+|||+
T Consensus       524 ~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~gv~gel~i~g~~~a~gy~~~p~lt~~~f~~~~~y~tgD~  603 (642)
T COG1020         524 ATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLGVPGELYIAGLGLALGYLNRPDLTAERFIALRLYRTGDL  603 (642)
T ss_pred             HhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCCCCCeeeEECCcchhhhhcCChhhhHHHhhhccCccCCCe
Confidence                                     457788888899999999999999999999999999998887  23 49999999


Q ss_pred             EEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCC
Q psy13807        123 FILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHP  161 (204)
Q Consensus       123 ~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~  161 (204)
                      ++..++|.+.++||.|+++|++|.++.+.+||..+.++|
T Consensus       604 ~r~~~dg~~e~lgr~D~qvki~g~Riel~eie~~l~~~~  642 (642)
T COG1020         604 ARPLADGALEYLGRKDSQVKIRGFRIELGEIEAALAEQP  642 (642)
T ss_pred             eeECCCCeEEEeccccceeEeceEecCcHHHHHHHhcCC
Confidence            999999999999999999999999999999999988764

>KOG1178|consensus

Probab=99.51  E-value=3.8e-13  Score=119.09  Aligned_cols=202  Identities=21%  Similarity=0.229  Sum_probs=138.4

Q ss_pred             CHhHHHHHcCccEEEecHHHHHHHHhccCCCCC------CCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc----
Q psy13807          1 MISRHIVKEKCTVLYGTPTMYVDLISSIQPLTE------EMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK----   70 (204)
Q Consensus         1 ~~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~------~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~----   70 (204)
                      +|.+.+++++++..+.+|++.+.++........      .........+.|+...++|++++..++..+...+-..    
T Consensus       279 ~l~~~le~y~i~~~~~~~a~~~~l~~~~~~~~~~l~~~~~~~dl~~~~~~Lkl~~~~~ep~~v~l~~s~~~~~~~~~~~~  358 (1032)
T KOG1178|consen  279 QLASTLERYGITVSHLLPAMCQLLLAILTTSLPLLEHAFSLSDLLTKRSCLKLVVLGGEPLLVSLYTSTFDLLAEIFFGL  358 (1032)
T ss_pred             hHHHHHHhhhheeeeechhhhhhhhhhcCcchhhhhhhhhcccccccchhheeeeecCCccchhhhhhhhhcccceeeee
Confidence            467899999999999999998887776544210      1111123445799999999999998888554442221    


Q ss_pred             ------------------------ceEEEEEC----------------CCCCcCCCCCeeEEEEEe----CcccccccCC
Q psy13807         71 ------------------------HLIVKVVD----------------KKGNIVPMGMCGEVCYRG----YNVMLGYYGE  106 (204)
Q Consensus        71 ------------------------~~~v~i~d----------------~~g~~~~~~~~Gel~v~~----~~~~~~y~~~  106 (204)
                                              ...+..+.                ..|.+.+.+..+......    ..+..| +..
T Consensus       359 ~y~s~~~~~~~s~~~~~~s~~ll~~~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~~~~~~~~~~~~g-~~~  437 (1032)
T KOG1178|consen  359 PYLSTDPTGLVSYDDFSPSKVLLTNENVYSVPKFDSIIGSLTVLESLYRAGGEGEGGVGKGCLGAEQNLSSWVVDG-YST  437 (1032)
T ss_pred             cccCCCCccceeHHhhCcccceecceeEEeccchhhccCCCcceeeeeccCcccCCcccceeecccccccceeecc-ccc
Confidence                                    12222222                222222222211111111    111222 122


Q ss_pred             cccccC--------CCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCc
Q psy13807        107 ENKILE--------NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE  178 (204)
Q Consensus       107 ~~~~~~--------~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~  178 (204)
                      ++....        .+.+|+|||.++.-++|.+.+.||.|++||.+|+|+.+.+|+..+..+|.|.++.+....+...++
T Consensus       438 ~~~~~~~~~~~d~~~~r~y~tgD~gr~l~ng~l~~~GR~d~qIK~rG~Ri~L~ei~t~v~~~p~v~~~itl~~~~~~~~~  517 (1032)
T KOG1178|consen  438 PENFLPNFLTVDGVKARIYRTGDNGRSLKNGGLEISGRADRQIKDRGVRIELGELNTVVEVHPDVKEAITLARENSTVGQ  517 (1032)
T ss_pred             hhhcCCcccccccchhhcccccccceeecCCCEEEEEeccceEEEccEEEehhhhchhhccCcchhhhheeeeeccccCc
Confidence            222221        456899999999888999999999999999999999999999999999999999999999888899


Q ss_pred             eEEEEEEeCCCCCC-CHHHHHHHHhc
Q psy13807        179 VVVANIELKPGASL-TQDDIKTYCKG  203 (204)
Q Consensus       179 ~~~a~v~~~~~~~~-~~~~l~~~l~~  203 (204)
                      .+.+||+...+... ....|++++..
T Consensus       518 ~l~aFvv~~~~~~~~~~~~i~~~l~~  543 (1032)
T KOG1178|consen  518 TLLAFVVERGGSKSVLIRDIRNYLKK  543 (1032)
T ss_pred             eEEEEEeccCCCCchhHHHHHHhhcc
Confidence            99999999865443 34667777764

>PTZ00297 pantothenate kinase; Provisional

Probab=99.43  E-value=2.1e-12  Score=119.17  Aligned_cols=163  Identities=17%  Similarity=0.237  Sum_probs=113.8

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCc-------------------cc-cc--------------CC-CCce
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMP-------------------NI-AE--------------EL-SSPV   46 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~-------------------~~-~~--------------~l-~~l~   46 (204)
                      +++.|++++||+++++|.+++.+............                   .. ..              .+ ..+|
T Consensus       681 lledL~~~rPTv~~~VPrv~ekI~~~i~~~~~~~~~~~~~lf~~A~~~k~~~~~~g~~~~~l~d~LVf~kir~~lGGrlr  760 (1452)
T PTZ00297        681 LQRAFVKFQPTILVAAPSLFSTSRLQLSRANERYSAVYSWLFERAFQLRSRLINIHRRDSSLLRFIFFRATQELLGGCVE  760 (1452)
T ss_pred             HHHHHHHHCCEEEEecHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHhcCCeE
Confidence            67899999999999999999977653211110000                   00 00              00 4688


Q ss_pred             EEEEeCC--CCCHHHHHHHHHHhC--Cc-------------------ceEEEEECCC--CCcCCCCCeeEEEEEeCcccc
Q psy13807         47 IALTAGA--PCSPTLFNKIRDTFG--IK-------------------HLIVKVVDKK--GNIVPMGMCGEVCYRGYNVML  101 (204)
Q Consensus        47 ~~~~~G~--~~~~~~~~~~~~~~g--~~-------------------~~~v~i~d~~--g~~~~~~~~Gel~v~~~~~~~  101 (204)
                      .+++||+  +++..+...+.-.++  .+                   ++++++.+.+  +..   +..|||+++      
T Consensus       761 ~~isGga~~~l~~~l~~~i~i~~g~glTE~~~~~~~~~~~~~G~PlpgvEvKI~~~~E~~~~---~~~GEIlvr------  831 (1452)
T PTZ00297        761 KIVLCVSEESTSFSLLEHISVCYVPCLREVFFLPSEGVFCVDGTPAPSLQVDLEPFDEPSDG---AGIGQLVLA------  831 (1452)
T ss_pred             EEEECCCccccChHHhCCceEEEecceEEeeeecCCCCcccCCeecCceEEEEcccccccCC---CCCCeEEEE------
Confidence            8999874  676666664432221  11                   6777776532  221   235999985      


Q ss_pred             cccCCcccccC-CCCceeccceEEEecCCeEEEEeeccceEE-eCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCce
Q psy13807        102 GYYGEENKILE-NDEWFPSGDFFILHENGYGQVVGRIKDIII-RGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEV  179 (204)
Q Consensus       102 ~y~~~~~~~~~-~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~-~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~  179 (204)
                       |+++++.+++ .++|+         +||++.|.||++|++| .+|++|.|..||+++..+|.|.+++|+|-+.+    .
T Consensus       832 -~~kdpe~T~e~~~gW~---------~dG~L~IidRkKdlikls~GEyVaP~~IE~~l~~sp~I~qi~V~Gd~~k----~  897 (1452)
T PTZ00297        832 -KKGEPRRTLPIAAQWK---------RDRTLRLLGPPLGILLPVAYEYVIAAELERIFSQSRYVNDIFLYADPSR----P  897 (1452)
T ss_pred             -ECCChHHHHHhhCcCc---------cCCeEEEEeccccceECCCCcEEcHHHHHHHHhcCCCccEEEEEecCCC----c
Confidence             4477776665 34553         6899999999999999 79999999999999999999999999986544    4


Q ss_pred             EEEEEEeC
Q psy13807        180 VVANIELK  187 (204)
Q Consensus       180 ~~a~v~~~  187 (204)
                      ++|+|++.
T Consensus       898 lvALVvpd  905 (1452)
T PTZ00297        898 IIAIVSPN  905 (1452)
T ss_pred             eEEEEEeC
Confidence            88888875

>TIGR02304 aden_form_hyp probable adenylate-forming enzyme

Probab=99.38  E-value=3.3e-11  Score=99.50  Aligned_cols=172  Identities=18%  Similarity=0.255  Sum_probs=105.0

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCcceEEEEECCCC
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKG   81 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~~~~v~i~d~~g   81 (204)
                      +++.|++++|+++.+.|+++..|++......       .. .+++.++++||+++++..+.+.+.||++-.+.+-..+ |
T Consensus       179 ~l~~L~~~~P~~L~g~pS~l~~LA~~~~~~~-------l~-~~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g  249 (430)
T TIGR02304       179 HIKRLNQRKPSIIVAPPSVLRALALEVMEGE-------LT-IKPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-G  249 (430)
T ss_pred             HHHHHHHhCCCEEEEcHHHHHHHHHHHHhcC-------CC-CCceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-h
Confidence            5789999999999999999999998765433       22 4789999999999999999999999986111111111 1


Q ss_pred             CcCCCCCeeEEEEEeCccccc--ccCCccccc----C--CCC----ceeccceEEEecC----Ce----E-EEEeeccce
Q psy13807         82 NIVPMGMCGEVCYRGYNVMLG--YYGEENKIL----E--NDE----WFPSGDFFILHEN----GY----G-QVVGRIKDI  140 (204)
Q Consensus        82 ~~~~~~~~Gel~v~~~~~~~~--y~~~~~~~~----~--~~~----~~~TGD~~~~~~~----g~----~-~~~GR~dd~  140 (204)
                      -....-..|.+++....+..-  +++......    .  ...    -|+|||++...++    |.    + .+.||.+|+
T Consensus       250 ~la~eC~~g~lHl~ed~~~vE~~ivD~~~~~~~ViT~L~n~~~PlIRYrtGD~~~~~~~~C~CGr~~~~i~~I~GR~dD~  329 (430)
T TIGR02304       250 FLASTCRCGTLHLNEDLVHIEKQYLDEHKRFVPIITDFTRTTQPIVRYRLNDILVESEQPCSCGSATMAIERIEGRQDDI  329 (430)
T ss_pred             heEEecCCCCEEEccccEEEEeeEECCCCceEEEEecCCCccceEEeeeCCCEEEeCCCCCCCCCcccccCCccCccCCE
Confidence            000000112222222211110  111100000    0  001    2899999887432    43    3 488999999


Q ss_pred             EEe---Cc--eeeChHHHHHH-HhcCCCcceEEEEeeeCCCCCceEEEEEEe
Q psy13807        141 IIR---GG--ENIIPKEIEYV-LQTHPDVVEAQVYGVPDERLGEVVVANIEL  186 (204)
Q Consensus       141 i~~---~G--~~v~~~~ie~~-l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~  186 (204)
                      +++   +|  ..++|..+++. +...++|.+..++-..    ...+...++.
T Consensus       330 l~~~~~~G~~v~v~p~~~~~~i~~~~~~i~~yQi~Q~~----~~~l~v~~~~  377 (430)
T TIGR02304       330 FQLITRSGDEQTVFPDFIRRVILFTLPLIVEYRVLQTG----SAQLELIADC  377 (430)
T ss_pred             EEEecCCCCeEEeCHHHHHHHHHhcCCCCceEEEEEcc----CCeEEEEEEe
Confidence            985   34  45699999886 5567999998887432    2244455554

Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.

>KOG3628|consensus

Probab=99.03  E-value=1.7e-08  Score=88.97  Aligned_cols=181  Identities=19%  Similarity=0.238  Sum_probs=127.6

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh---CCc--------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF---GIK--------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~---g~~--------   70 (204)
                      |+++|+++++.-.+.+=..++.+.+......+.....-..+++ ..++..=+.....+.+-+.+.|   |..        
T Consensus      1028 ll~~i~~~kvkDt~~~~~tln~c~~~l~t~~enl~~~gnn~s~-s~vv~~~~RPr~ali~sf~klfa~igLsp~avStsy 1106 (1363)
T KOG3628|consen 1028 LLQIISQYKVKDTYPTYSTLNLCQKGLETSVENLSKRGNNTSS-SIVVPAEERPRIALIASFKKLFAAIGLSPRAVSTSY 1106 (1363)
T ss_pred             HHHHHhcccccccchhHHHHHHHHhccccccchhhhhhccccc-ceeeecCCccHHHHHHHHHHHHHHcCCChhhhcccc
Confidence            7899999999999999888888877665444222211122222 2223333333456666665553   222        


Q ss_pred             ------------------------------------------------------ceEEEEECCC-CCcCCCCCeeEEEEE
Q psy13807         71 ------------------------------------------------------HLIVKVVDKK-GNIVPMGMCGEVCYR   95 (204)
Q Consensus        71 ------------------------------------------------------~~~v~i~d~~-g~~~~~~~~Gel~v~   95 (204)
                                                                            ++++.|++|+ -.+|..|+.||||+.
T Consensus      1107 s~r~Np~Ic~r~~sg~~Pt~~y~D~raLR~grV~~ve~~ap~~l~L~dSG~~~~~~~i~IvnPEtk~pc~dge~GEIW~~ 1186 (1363)
T KOG3628|consen 1107 SSRVNPFICLRSYSGPEPTTVYLDARALREGRVRLVEVGAPHSLLLYDSGKLPVYTDIAIVNPETKGPCRDGELGEIWVN 1186 (1363)
T ss_pred             cccCChHhhhccccCCCCcceeechhhhhccceeeeecCCCCccccccCCcccccceeEEeCCccccccccCCcceEEec
Confidence                                                                  6778888887 678999999999999


Q ss_pred             eCcccccccCCcccccC-------------CCCceeccceEEEe------cC----CeEEEEeeccceEEeCceeeChHH
Q psy13807         96 GYNVMLGYYGEENKILE-------------NDEWFPSGDFFILH------EN----GYGQVVGRIKDIIIRGGENIIPKE  152 (204)
Q Consensus        96 ~~~~~~~y~~~~~~~~~-------------~~~~~~TGD~~~~~------~~----g~~~~~GR~dd~i~~~G~~v~~~~  152 (204)
                      +.+.+.+|+...+....             ..+|-||||+|.+.      .+    ..+|++|-.++.+-++|.+.+|.+
T Consensus      1187 S~hnA~~~~~~~d~~~~~~fn~rl~~g~~~~~sy~RTG~LGFl~~t~~t~~~~e~~~~LyVlG~i~EtlEl~GL~h~p~D 1266 (1363)
T KOG3628|consen 1187 SAHNASCSFTIGDELRSNHFNARLSSGDLLGKSYARTGDLGFLRRTSLTDANVERHDLLYVLGAIDETLELNGLRHFPSD 1266 (1363)
T ss_pred             cccccccccccCchhhhhhhhhhccccccccccceeeeeeeeeeeeecccccceeeeeEEEeecccceeeecCcccCcch
Confidence            99877777654322211             35699999999973      22    368999999999999999999999


Q ss_pred             HHHHHh-cCCCcceEEEEeeeCCCCCceEEEEEEeCC
Q psy13807        153 IEYVLQ-THPDVVEAQVYGVPDERLGEVVVANIELKP  188 (204)
Q Consensus       153 ie~~l~-~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~  188 (204)
                      ||.-+. .||.|.+|+|+-.     +..++.+++...
T Consensus      1267 IE~TV~~vH~~I~~cavF~~-----~glvVvviE~~g 1298 (1363)
T KOG3628|consen 1267 IETTVERVHPSIGGCAVFQA-----TGLVVVVIECHG 1298 (1363)
T ss_pred             HHHHHHHhcccccceeeEee-----CCeEEEEEEecC
Confidence            999665 5899999999944     336666666654

>PF13193 AMP-binding_C: AMP-binding enzyme C-terminal domain; PDB: 3L8C_B 2VSQ_A 3R44_A 3RG2_B 3A9U_A 3A9V_A 3NI2_A 1V26_B 1ULT_B 1V25_B

Probab=98.45  E-value=3.9e-07  Score=56.75  Aligned_cols=46  Identities=48%  Similarity=0.719  Sum_probs=41.8

Q ss_pred             HHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        152 EIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       152 ~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      |||+++.++|+|.+++|++.+++..|+.++|++++      +.++|+++|++
T Consensus         1 EIE~~l~~~~~V~~~~V~~~~d~~~g~~l~a~vv~------~~~~i~~~~~~   46 (73)
T PF13193_consen    1 EIESVLRQHPGVAEAAVVGVPDEDWGERLVAFVVL------DEEEIRDHLRD   46 (73)
T ss_dssp             HHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEE------HHHHHHHHHHH
T ss_pred             CHHHHHhcCCCccEEEEEEEEcccccccceeEEEe------eecccccchhh
Confidence            79999999999999999999998888999999998      45888888875

...

>KOG3628|consensus

Probab=97.67  E-value=0.00095  Score=60.16  Aligned_cols=167  Identities=16%  Similarity=0.158  Sum_probs=111.4

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCc----ccccCCCCceEEEEeCCCCCHHHHHHHHHH----hCCc---
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMP----NIAEELSSPVIALTAGAPCSPTLFNKIRDT----FGIK---   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~----~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~----~g~~---   70 (204)
                      |.+++.+++.+++..=-..++.....-...+.+.-    ....++++++.+++.-..+.++..+-...+    .|..   
T Consensus       353 ~~~l~~k~R~~~~ltd~~~Lkq~~~ny~~~p~a~~s~~k~~t~d~sslk~C~Vtc~~vd~~~~~ivs~~wlk~lg~~~~~  432 (1363)
T KOG3628|consen  353 IANLITKYRATWSLTDYAGLKQPVYNYQEDPKATLSFKKYKTPDLSSLKGCMVTCTAVDTEFQEIVSDRWLKPLGETNVK  432 (1363)
T ss_pred             hhhhhccceeEEEeecccccCcccccccCCcccccchhhccCCCccceeeeEEeeeecchHHHHHHHHhhcccccCcCcc
Confidence            56778888888877665555443332222221111    112578999999999999998776654433    2332   


Q ss_pred             ------------------------------------------------------------------------------ce
Q psy13807         71 ------------------------------------------------------------------------------HL   72 (204)
Q Consensus        71 ------------------------------------------------------------------------------~~   72 (204)
                                                                                                    ..
T Consensus       433 ~~~~p~l~ll~hGgi~is~k~~~~~~~~~~r~p~~~~~~~~~e~ll~~~~L~~~~V~v~~e~~is~~s~kd~~~i~~g~~  512 (1363)
T KOG3628|consen  433 VVDFPILCLLWHGGIPISFKDWMEIGTVSIRRPEQMADTLPGEGLLSKEALKLNEVEVDTEDDISSLSVKDVLCIMPGDA  512 (1363)
T ss_pred             eeechhhhhhhcCceEEEeccchhhhcccccCcccccccCccceeeeccccccceEEEcchhhhhhcCccccceecccce
Confidence                                                                                          34


Q ss_pred             EEEEECCC-CCcCCCCCeeEEEEEeCcccccccCCcccccC---------------CCCceeccceEEEecCCeEEEEee
Q psy13807         73 IVKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---------------NDEWFPSGDFFILHENGYGQVVGR  136 (204)
Q Consensus        73 ~v~i~d~~-g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---------------~~~~~~TGD~~~~~~~g~~~~~GR  136 (204)
                      .+.+++++ -..|..+++|||||.++++...||..+..+..               ...+.+||=+|.+. +|.++++|=
T Consensus       513 t~~vv~~~t~~LC~~~eVGEIwVsS~~~~~~~~al~~~t~~~F~~~~~~s~~~~~~n~~FmRtGLlGFv~-~gki~vl~~  591 (1363)
T KOG3628|consen  513 TLAVVNPDTNQLCKTDEVGEIWVSSNSLGKLFYALDKQTENTFKATPVESSGKPPSNVPFMRTGLLGFVH-NGKIYVLGL  591 (1363)
T ss_pred             EEEEeCCCcccccccCcceeEEEecCCcccceeeccccccceEEeeeccccCCCCccchhhhhcceeeee-CCeEEEEEe
Confidence            45566666 56788999999999999999999876654433               23478999999996 556777776


Q ss_pred             ccceEE-eCceeeChH----------HHHHHHhcCCCcceEEEE
Q psy13807        137 IKDIII-RGGENIIPK----------EIEYVLQTHPDVVEAQVY  169 (204)
Q Consensus       137 ~dd~i~-~~G~~v~~~----------~ie~~l~~~~~V~~~~v~  169 (204)
                      .+|.+. ..|-+.+..          .|+-+.+..+.|-+++++
T Consensus       592 k~d~llq~~~~~h~~d~iv~thya~~~iktV~R~v~~VF~~saf  635 (1363)
T KOG3628|consen  592 KEDGLLQVSGWRHNADDIVATHYAVELIKTVMRGVIAVFDVSAF  635 (1363)
T ss_pred             chhhhhhhhhhhhhhhhhHhhHHHHHHHHHHHhccceEEEEeee
Confidence            666554 666554433          345566777888888888

>PF03321 GH3: GH3 auxin-responsive promoter; InterPro: IPR004993 Transcription of the gene family, GH3, has been shown to be specifically induced by the plant hormone auxin

Probab=97.54  E-value=0.003  Score=54.18  Aligned_cols=84  Identities=15%  Similarity=0.143  Sum_probs=54.8

Q ss_pred             eeccceEEEec--CC--eEEEEeeccceEEeCceeeChHHHHHHHhcC-----CCcceEEEEeeeCCCCCceEEEEEEeC
Q psy13807        117 FPSGDFFILHE--NG--YGQVVGRIKDIIIRGGENIIPKEIEYVLQTH-----PDVVEAQVYGVPDERLGEVVVANIELK  187 (204)
Q Consensus       117 ~~TGD~~~~~~--~g--~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~-----~~V~~~~v~~~~~~~~~~~~~a~v~~~  187 (204)
                      |+.||+.+...  ++  .+.|.||.+.++++.|++++-.+|.+++.+.     -.+.+..+.+..........+.++++.
T Consensus       371 Y~iGDvVrv~gf~~~~P~i~F~~R~~~~l~l~gEkl~e~~v~~av~~~~~~~~~~~~~f~~~~~~~~~~~~~Y~~~~e~~  450 (528)
T PF03321_consen  371 YRIGDVVRVTGFYNQTPRIEFVGRRGQVLSLFGEKLSEEQVQEAVARALQETGLELRDFTVAPDPSSGNPPHYVLFWELE  450 (528)
T ss_dssp             EEECEEEEEEEEETTEEEEEEEEETTEEE-SSS--EEHHHHHHHHHHHHHCTT-EEEEEEEEEE--SSSSBEEEEEEEEC
T ss_pred             eecCCEEEEeeccCCCcEEEEeccCCceeecceeecCHHHHHHHHHHHHHhcCCceeeEEEEeecccCCCCceEEEEEeC
Confidence            89999999742  34  6999999999999999999999999988764     335566666553223334667777776


Q ss_pred             CCCCCCHHHHHHHH
Q psy13807        188 PGASLTQDDIKTYC  201 (204)
Q Consensus       188 ~~~~~~~~~l~~~l  201 (204)
                      .. ..+.+.+.+.|
T Consensus       451 ~~-~~~~~~~~~~l  463 (528)
T PF03321_consen  451 GE-PDDLEELAKAL  463 (528)
T ss_dssp             S--HHHHHHHHHHH
T ss_pred             CC-chHHHHHHHHH
Confidence            54 22333444443

The auxin-responsive GH3 gene promoter is composed of multiple auxin response elements (AuxREs), and each AuxRE contributes incrementally to the strong auxin inducibility to the promoter.; PDB: 4EPL_A 4EQ4_B 4EWV_B 4EQL_B 4EPM_A.

>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria

Probab=97.28  E-value=0.013  Score=47.90  Aligned_cols=118  Identities=19%  Similarity=0.308  Sum_probs=77.4

Q ss_pred             HHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeC-------CCCC-HHHHHHHHHHhCC-c------
Q psy13807          6 IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAG-------APCS-PTLFNKIRDTFGI-K------   70 (204)
Q Consensus         6 i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G-------~~~~-~~~~~~~~~~~g~-~------   70 (204)
                      -++.++..++++|+++-.++...+...     ....+++=-.++.||       +.++ ++..+.+.+.||. +      
T Consensus       188 ~~~~~pv~l~Gftf~~~~~~~~l~~~~-----~~~~L~~~s~vi~~GGwK~~~~e~v~r~ef~~~l~~~~Gv~~~~~i~~  262 (365)
T PF04443_consen  188 EHSGEPVLLFGFTFFIWFLLDELEERG-----IRFRLPKGSIVIHGGGWKGRRKEAVSREEFYARLQEVFGVIPIENIYD  262 (365)
T ss_pred             HhCCCCEEEECchHHHHHHHHHHHhcC-----CcccCCCCCEEEeCCCCCccccCccCHHHHHHHHHHHHCCCCHHHeee
Confidence            356778889999998877665544333     003343222344444       3465 6888888898998 3      


Q ss_pred             ---------------------ceEEEEECCC-CCcCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEecC
Q psy13807         71 ---------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHEN  128 (204)
Q Consensus        71 ---------------------~~~v~i~d~~-g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~~  128 (204)
                                           ...|.+.|++ ..++|.|+.|-|.+-.+... .|          .+..-|.|+|.+..+
T Consensus       263 ~ygmtEl~s~~~~~~~~~~~~p~wV~iRDp~tl~~~~~Ge~Gli~vidl~~~-s~----------p~~IlTeDlGvl~~~  331 (365)
T PF04443_consen  263 MYGMTELNSQAYECGHGHFHVPPWVIIRDPETLEPLPPGETGLIQVIDLANT-SY----------PGFILTEDLGVLHGD  331 (365)
T ss_pred             eeeccccchhheeCCCCcccCCCeEEEECCCCCcCCCCCCeeEEEEEccccc-CC----------CcEEEEcceeeecCC
Confidence                                 1236667876 68999999999988666332 11          233679999987543


Q ss_pred             --------CeEEEEeeccc
Q psy13807        129 --------GYGQVVGRIKD  139 (204)
Q Consensus       129 --------g~~~~~GR~dd  139 (204)
                              .+|.++||.+.
T Consensus       332 ~~c~cr~g~~f~vlGR~~~  350 (365)
T PF04443_consen  332 DDCGCRKGKYFEVLGRADG  350 (365)
T ss_pred             CCCCCccCCEEEEEeCCCC
Confidence                    27999999763

LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence

>PF14535 AMP-binding_C_2: AMP-binding enzyme C-terminal domain; PDB: 2Y27_A 2Y4N_A 3QOV_B 3S89_D 3LAX_A 2Y4O_B

Probab=96.85  E-value=0.0079  Score=39.36  Aligned_cols=45  Identities=38%  Similarity=0.591  Sum_probs=34.7

Q ss_pred             ceeeChHHHHHHHhcCCCcc-eEEEEeeeCCCCCceEEEEEEeCCCC
Q psy13807        145 GENIIPKEIEYVLQTHPDVV-EAQVYGVPDERLGEVVVANIELKPGA  190 (204)
Q Consensus       145 G~~v~~~~ie~~l~~~~~V~-~~~v~~~~~~~~~~~~~a~v~~~~~~  190 (204)
                      |.+|+|.+||+++.++|++. +..++ +......+.+...|++.++.
T Consensus         1 GvnvfP~~Ie~vl~~~~~~~~~y~i~-v~~~~~~D~l~v~vE~~~~~   46 (96)
T PF14535_consen    1 GVNVFPSQIEEVLREFPEVSPEYQIV-VTREGGLDELTVRVELRPGF   46 (96)
T ss_dssp             TEEE-HHHHHHHHCTSTTEEEEEEEE-EEEETTEEEEEEEEEESTTC
T ss_pred             CcEECHHHHHHHHHhCcCCCCcEEEE-EEcCCCCcEEEEEEEECCcc
Confidence            78999999999999999998 55555 44444567888888888754

>PLN02249 indole-3-acetic acid-amido synthetase

Probab=95.44  E-value=0.33  Score=42.44  Aligned_cols=43  Identities=7%  Similarity=0.154  Sum_probs=37.8

Q ss_pred             eeccceEEEec----CCeEEEEeeccceEEeCceeeChHHHHHHHhc
Q psy13807        117 FPSGDFFILHE----NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT  159 (204)
Q Consensus       117 ~~TGD~~~~~~----~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~  159 (204)
                      |+.||+.+...    --.|.|.||.+.++++.|++++-.+++.++..
T Consensus       410 Y~iGDvVrvtgf~~~~P~i~F~gR~~~~ls~~GEKl~e~~v~~Av~~  456 (597)
T PLN02249        410 YRVGDILRVTGFHNSAPQFKFIRRKNVLLSIESDKTDEADLQKAVEN  456 (597)
T ss_pred             eecCCEEEEeeccCCCcEEEEEccCCcceecccccCCHHHHHHHHHH
Confidence            78999999853    23689999999999999999999999998776

>PLN02620 indole-3-acetic acid-amido synthetase

Probab=91.17  E-value=3.5  Score=36.22  Aligned_cols=44  Identities=9%  Similarity=0.141  Sum_probs=37.4

Q ss_pred             eeccceEEEe----cCCeEEEEeeccceEEeCceeeChHHHHHHHhcC
Q psy13807        117 FPSGDFFILH----ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTH  160 (204)
Q Consensus       117 ~~TGD~~~~~----~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~  160 (204)
                      |+.||+.+..    ..-.|.|.+|.+-+..+.|.|.+-.++-.++.+.
T Consensus       423 YrlGDvv~V~Gf~n~~P~~~Fv~R~~~~lsi~gEK~tE~~l~~Av~~a  470 (612)
T PLN02620        423 YRVGDVLRVAGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQNAVKNA  470 (612)
T ss_pred             EecCCEEEEeeecCCCceEEEEeecCceeecccccCCHHHHHHHHHHH
Confidence            8999999974    3347999999999999999999999988877653

>PLN02247 indole-3-acetic acid-amido synthetase

Probab=83.11  E-value=4.6  Score=35.50  Aligned_cols=44  Identities=9%  Similarity=0.161  Sum_probs=37.9

Q ss_pred             eeccceEEEe----cCCeEEEEeeccceEEeCceeeChHHHHHHHhcC
Q psy13807        117 FPSGDFFILH----ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTH  160 (204)
Q Consensus       117 ~~TGD~~~~~----~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~  160 (204)
                      |+.||+.+..    ..-.|.|++|.+.++.+.|.|.+-.++-+++.+.
T Consensus       417 YrlGDvv~V~GF~n~~P~~~Fv~R~~~vlsi~gEK~tE~~l~~Av~~a  464 (606)
T PLN02247        417 YRVGDILMVTGFYNNAPQFRFVQRRNVVLSIDTDKTNEEDLLKAVTQA  464 (606)
T ss_pred             EecCCEEEEeeecCCCceEEEEecCCceeecccccCCHHHHHHHHHHH
Confidence            8999999973    3357999999999999999999999998877764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	204
2qvz_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATIO		1e-16
1t5d_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chl		1e-16
2qvx_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATIO		1e-16
3dlp_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P,		1e-16
3cw8_X	504	4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cb		1e-16
1t5h_X	504	4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SE		3e-16
1ba3_A	550	Firefly Luciferase In Complex With Bromoform Length		3e-15
3iep_A	551	Firefly Luciferase Apo Structure (P41 Form) Length		3e-15
4g36_A	555	Photinus Pyralis Luciferase In The Adenylate-Formin		3e-15
4fuq_A	503	Crystal Structure Of Apo Matb From Rhodopseudomonas		3e-15
3ivr_A	509	Crystal Structure Of Putative Long-Chain-Fatty-Acid		5e-15
3qya_A	582	Crystal Structure Of A Red-Emitter Mutant Of Lampyr		7e-15
3o82_A	544	Structure Of Base N-Terminal Domain From Acinetobac		1e-14
4g37_A	555	Structure Of Cross-Linked Firefly Luciferase In Sec		5e-14
3rg2_A	617	Structure Of A Two-Domain Nrps Fusion Protein Conta		1e-12
4fut_A	503	Crystal Structure Of Atp Bound Matb From Rhodopseud		1e-12
2wd9_A	569	Crystal Structure Of Human Acyl-coa Synthetase Medi		2e-12
3b7w_A	570	Crystal Structure Of Human Acyl-Coa Synthetase Medi		2e-12
3a9u_A	536	Crystal Structures And Enzymatic Mechanisms Of A Po		3e-12
3r44_A	517	Mycobacterium Tuberculosis Fatty Acyl Coa Synthetas		6e-12
4gxr_A	503	Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Len		6e-12
2d1q_A	548	Crystal Structure Of The Thermostable Japanese Fire		6e-12
2d1s_A	548	Crystal Structure Of The Thermostable Japanese Fire		7e-12
4gxq_A	506	Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimer		7e-12
2d1t_A	548	Crystal Structure Of The Thermostable Japanese Fire		1e-11
3tsy_A	979	4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Pr		2e-11
3etc_A	580	2.1 A Structure Of Acyl-Adenylate Synthetase From M		2e-11
1ult_A	541	Crystal Structure Of Tt0168 From Thermus Thermophil		3e-11
1mdb_A	539	Crystal Structure Of Dhbe In Complex With Dhb-adeny		7e-11
3g7s_A	549	Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Li		1e-10
1md9_A	539	Crystal Structure Of Dhbe In Complex With Dhb And A		2e-10
3nyq_A	505	Malonyl-Coa Ligase Ternary Product Complex With Met		4e-10
3ipl_A	501	Crystal Structure Of O-Succinylbenzoic Acid-Coa Lig		9e-10
3pbk_A	583	Structural And Functional Studies Of Fatty Acyl-Ade		4e-09
2v7b_A	529	Crystal Structures Of A Benzoate Coa Ligase From Bu		1e-08
2p2m_A	652	Acetyl-Coa Synthetase, R194a Mutation Length = 652		2e-06
2p20_A	652	Acetyl-Coa Synthetase, R584a Mutation Length = 652		2e-06
1pg3_A	652	Acetyl Coa Synthetase, Acetylated On Lys609 Length		2e-06
2p2b_A	652	Acetyl-coa Synthetase, V386a Mutation Length = 652		2e-06
2p2q_A	652	Acetyl-Coa Synthetase, R584e Mutation Length = 652		2e-06
2p2j_A	652	Acetyl-Coa Synthetase, K609a Mutation Length = 652		2e-06
2p2f_A	652	Acetyl-coa Synthetase, Wild-type With Acetate, Amp,		2e-06
2vsq_A	1304	Structure Of Surfactin A Synthetase C (Srfa-C), A N		4e-06
3kxw_A	590	The Crystal Structure Of Fatty Acid Amp Ligase From		8e-05
1ry2_A	663	Crystal Structure Of Yeast Acetyl-Coenzyme A Synthe		5e-04

>pdb|2QVZ|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303A MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 52  GAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYN-VMLGYYGEENKI 110
           G   +P  F+++R        IV++      IV  G  GE+     +   +GY  +    
Sbjct: 321 GTEMAPGFFSEVR--------IVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQAT 372
Query: 111 LE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQV 168
            E   D W+ + D  +    G  +++GR+ D+II GGENI P EIE VL T P V E  V
Sbjct: 373 AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVV 432
Query: 169 YGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
            G+ D+R G+ V A +  + G +L+ D + T+C+  
Sbjct: 433 IGLADQRWGQSVTACVVPRLGETLSADALDTFCRSS 468

>pdb|1T5D|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE BOUND TO 4-Chlorobenzoate Length = 504

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 52  GAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYN-VMLGYYGEENKI 110
           G   +P  F+++R        IV++      IV  G  GE+     +   +GY  +    
Sbjct: 321 GTEMAPGFFSEVR--------IVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQAT 372
Query: 111 LE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQV 168
            E   D W+ + D  +    G  +++GR+ D+II GGENI P EIE VL T P V E  V
Sbjct: 373 AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVV 432
Query: 169 YGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
            G+ D+R G+ V A +  + G +L+ D + T+C+  
Sbjct: 433 IGLADQRWGQSVTACVVPRLGETLSADALDTFCRSS 468

>pdb|2QVX|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, I303G MUTATION, BOUND TO 3- Chlorobenzoate Length = 504

Iteration: 1
 Score = 82.8 bits (203), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 78/154 (50%), Gaps = 11/154 (7%)
Query: 52  GAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYN-VMLGYYGEENKI 110
           G   +P  F+++R        IV++      IV  G  GE+     +   +GY  +    
Sbjct: 321 GTEMAPGFFSEVR--------IVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQAT 372
Query: 111 LE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQV 168
            E   D W+ + D  +    G  +++GR+ D+II GGENI P EIE VL T P V E  V
Sbjct: 373 AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVV 432
Query: 169 YGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
            G+ D+R G+ V A +  + G +L+ D + T+C+
Sbjct: 433 IGLADQRWGQSVTACVVPRLGETLSADALDTFCR 466

>pdb|3DLP|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE, MUTANT D402P, BOUND To 4cb Length = 504

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 52  GAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYN-VMLGYYGEENKI 110
           G   +P  F+++R        IV++      IV  G  GE+     +   +GY  +    
Sbjct: 321 GTEMAPGFFSEVR--------IVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQAT 372
Query: 111 LE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQV 168
            E   D W+ + D  +    G  +++GR+ D+II GGENI P EIE VL T P V E  V
Sbjct: 373 AEKLQDGWYRTSDVAVWTPEGTVRILGRVPDMIISGGENIHPSEIERVLGTAPGVTEVVV 432
Query: 169 YGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
            G+ D+R G+ V A +  + G +L+ D + T+C+  
Sbjct: 433 IGLADQRWGQSVTACVVPRLGETLSADALDTFCRSS 468

>pdb|3CW8|X Chain X, 4-chlorobenzoyl-coa Ligase/synthetase, Bound To 4cba-adenylate Length = 504

Iteration: 1
 Score = 82.4 bits (202), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 50/156 (32%), Positives = 78/156 (50%), Gaps = 11/156 (7%)
Query: 52  GAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYN-VMLGYYGEENKI 110
           G   +P  F+++R        IV++      IV  G  GE+     +   +GY  +    
Sbjct: 321 GTEMAPGFFSEVR--------IVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPEAT 372
Query: 111 LE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQV 168
            E   D W+ + D  +    G  +++GR+ D+II GGENI P EIE VL T P V E  V
Sbjct: 373 AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVV 432
Query: 169 YGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
            G+ D+R G+ V A +  + G +L+ D + T+C+  
Sbjct: 433 IGLADQRWGQSVTACVVPRLGETLSADALDTFCRSS 468

>pdb|1T5H|X Chain X, 4-Chlorobenzoyl-Coa LigaseSYNTHETASE UNLIGANDED, SELENOMETHIONINE Length = 504

Iteration: 1
 Score = 81.6 bits (200), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 77/154 (50%), Gaps = 11/154 (7%)
Query: 52  GAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYN-VMLGYYGEENKI 110
           G   +P  F+++R        IV++      IV  G  GE+     +   +GY  +    
Sbjct: 321 GTEXAPGFFSEVR--------IVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQAT 372
Query: 111 LE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQV 168
            E   D W+ + D  +    G  +++GR+ D II GGENI P EIE VL T P V E  V
Sbjct: 373 AEKLQDGWYRTSDVAVWTPEGTVRILGRVDDXIISGGENIHPSEIERVLGTAPGVTEVVV 432
Query: 169 YGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
            G+ D+R G+ V A +  + G +L+ D + T+C+
Sbjct: 433 IGLADQRWGQSVTACVVPRLGETLSADALDTFCR 466

>pdb|1BA3|A Chain A, Firefly Luciferase In Complex With Bromoform Length = 550

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 74  VKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGE---ENKILENDEWFPSGDFFILHENG 129
            KVVD   G  + +   GE+C RG  +M GY       N +++ D W  SGD     E+ 
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 430
Query: 130 YGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
           +  +V R+K +I   G  + P E+E +L  HP++ +A V G+PD+  GE+  A + L+ G
Sbjct: 431 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 490
Query: 190 ASLTQDDIKTYCKGK 204
            ++T+ +I  Y   +
Sbjct: 491 KTMTEKEIVDYVASQ 505

>pdb|3IEP|A Chain A, Firefly Luciferase Apo Structure (P41 Form) Length = 551

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 74  VKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGE---ENKILENDEWFPSGDFFILHENG 129
            KVVD   G  + +   GE+C RG  +M GY       N +++ D W  SGD     E+ 
Sbjct: 371 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 430
Query: 130 YGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
           +  +V R+K +I   G  + P E+E +L  HP++ +A V G+PD+  GE+  A + L+ G
Sbjct: 431 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 490
Query: 190 ASLTQDDIKTYCKGK 204
            ++T+ +I  Y   +
Sbjct: 491 KTMTEKEIVDYVASQ 505

>pdb|4G36|A Chain A, Photinus Pyralis Luciferase In The Adenylate-Forming Conformation Bound To Dlsa Length = 555

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 4/135 (2%)
Query: 74  VKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGE---ENKILENDEWFPSGDFFILHENG 129
            KVVD   G  + +   GE+C RG  +M GY       N +++ D W  SGD     E+ 
Sbjct: 376 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 435
Query: 130 YGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
           +  +V R+K +I   G  + P E+E +L  HP++ +A V G+PD+  GE+  A + L+ G
Sbjct: 436 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 495
Query: 190 ASLTQDDIKTYCKGK 204
            ++T+ +I  Y   +
Sbjct: 496 KTMTEKEIVDYVASQ 510

>pdb|4FUQ|A Chain A, Crystal Structure Of Apo Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 78.2 bits (191), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 64/216 (29%), Positives = 98/216 (45%), Gaps = 33/216 (15%)
Query: 10  KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEEL---SSPVIALTAGAPCSPTLFNKIRDT 66
           + TVL G PT Y  L+ S + LT+E           S+P++A T     S    + + + 
Sbjct: 242 RATVLXGVPTFYTRLLQSPR-LTKETTGHXRLFISGSAPLLADTH-REWSAKTGHAVLER 299
Query: 67  FG------------------------IKHLIVKVVD-KKGNIVPMGMCGEVCYRGYNVML 101
           +G                        +  +  +V D + G  +P G  G +  +G NV  
Sbjct: 300 YGXTETNXNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGXIEVKGPNVFK 359
Query: 102 GYYGEENKI---LENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQ 158
           GY+    K      +D +F +GD   + E GY  ++GR KD++I GG N+ PKEIE  + 
Sbjct: 360 GYWRXPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPKEIESEID 419
Query: 159 THPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ 194
             P VVE+ V GVP    GE V A +    GA++ +
Sbjct: 420 AXPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDE 455

>pdb|3IVR|A Chain A, Crystal Structure Of Putative Long-Chain-Fatty-Acid Coa Ligase From Rhodopseudomonas Palustris Cga009 Length = 509

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 45/131 (34%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHENGYG 131
           V VVD +   +P G  GE+  RG  V  GY+           + W  +GD      +GY 
Sbjct: 332 VAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYL 391
Query: 132 QVVGRI--KDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
              GR   K++I  GGEN+ P E+E  L+ HP + +A V GVPD +  E + A    KPG
Sbjct: 392 FYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPG 451
Query: 190 ASLTQDDIKTY 200
            S+  D +  +
Sbjct: 452 ESIAADALAEF 462

>pdb|3QYA|A Chain A, Crystal Structure Of A Red-Emitter Mutant Of Lampyris Turkestanicus Luciferase Length = 582

Iteration: 1
 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 9/168 (5%)
Query: 41  ELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVD-KKGNIVPMGMCGEVCYRGYNV 99
           E +S +I    G    P    K+   F       K+VD   G  + +   GE+C +G  +
Sbjct: 378 ETTSAIIITPRGRDDKPGACGKVVPFFS-----AKIVDLDTGKTLGVNQRGELCVKGPMI 432
Query: 100 MLGYYGE---ENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYV 156
           M GY       + +++ D W  SGD     ++GY  +V R+K +I   G  + P E+E +
Sbjct: 433 MKGYVNNPEATSALIDKDGWLHSGDIAYYDKDGYFFIVDRLKSLIKYKGYQVPPAELESI 492
Query: 157 LQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           L  HP + +A V G+PD   GE+  A + L+ G ++T+ ++  Y  G+
Sbjct: 493 LLQHPFIFDAGVAGIPDPDAGELPAAVVVLEEGKTMTEQEVMDYVAGQ 540

>pdb|3O82|A Chain A, Structure Of Base N-Terminal Domain From Acinetobacter Baumannii Bound To 5'-O-[n-(2,3-Dihydroxybenzoyl)sulfamoyl] Adenosine Length = 544

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 46/122 (37%), Positives = 68/122 (55%), Gaps = 8/122 (6%)
Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG---EENKILENDEWFPSGDFFILHENGY 130
           +K+VD++   VP G  G +  RG     GYY      +++ + D ++ SGD      +G 
Sbjct: 372 IKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGN 431
Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE-----VVVANIE 185
            +VVGRIKD I RGGE I  +EIE ++  HP+V+ A +  + DE+ GE     +V  N E
Sbjct: 432 LRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPE 491
Query: 186 LK 187
           LK
Sbjct: 492 LK 493

>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second Catalytic Conformation Length = 555

Iteration: 1
 Score = 73.9 bits (180), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 43/135 (31%), Positives = 71/135 (52%), Gaps = 4/135 (2%)
Query: 74  VKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGE---ENKILENDEWFPSGDFFILHENG 129
            KVVD   G  + +   GE+  RG  +M GY       N +++ D W  SGD     E+ 
Sbjct: 376 AKVVDLDTGKTLGVNQRGELSVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 435
Query: 130 YGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
           +  +V R+K +I   G  + P E+E +L  HP++ +A V G+PD+  GE+  A + L+ G
Sbjct: 436 HFFIVDRLKSLIKYKGCQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 495
Query: 190 ASLTQDDIKTYCKGK 204
            ++T+ +I  Y   +
Sbjct: 496 KTMTEKEIVDYVASQ 510

>pdb|3RG2|A Chain A, Structure Of A Two-Domain Nrps Fusion Protein Containing The Ente Adenylation Domain And Entb Aryl-Carrier Protein From Enterobactin Biosynthesis Length = 617

Iteration: 1
 Score = 69.7 bits (169), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 43/117 (36%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEEN---KILENDEWFPSGDFFILHENGY 130
           V V D +GN +P G  G +  RG     GYY          + + ++ SGD   +   GY
Sbjct: 367 VWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGY 426
Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELK 187
             V GR KD I RGGE I  +EIE +L  HP V+ A +  + DE +GE   A + +K
Sbjct: 427 ITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVK 483

>pdb|4FUT|A Chain A, Crystal Structure Of Atp Bound Matb From Rhodopseudomonas Palustris Length = 503

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 60/225 (26%), Positives = 97/225 (43%), Gaps = 31/225 (13%)
Query: 10  KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELS--SPVIALTAGAPCSPTLFNKIRDTF 67
           + TVL G PT Y  L+ S +   E   ++   +S  +P++A T     S    + + + +
Sbjct: 242 RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTH-REWSAXTGHAVLERY 300
Query: 68  GIKH------------------------LIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLG 102
           G+                          +  +V D + G  +P G  G +   G NV  G
Sbjct: 301 GMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXG 360
Query: 103 YYGEENKI---LENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT 159
           Y+           +D +F +GD   + E GY  ++GR  D++I GG N+ P EIE  +  
Sbjct: 361 YWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDA 420
Query: 160 HPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
            P VVE+ V GVP    GE V A +    GA++ +  +     G+
Sbjct: 421 MPGVVESAVIGVPHADFGEGVTAVVVRDXGATIDEAQVLHGLDGQ 465

>pdb|2WD9|A Chain A, Crystal Structure Of Human Acyl-coa Synthetase Medium-chain Family Member 2a (l64p Mutation) In Complex With Ibuprofen Length = 569

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Query: 74  VKVVDKKGNIVPMGMCGEVCYR-----GYNVMLGYYGEENKILEN---DEWFPSGDFFIL 125
           V+++D KGN++P G  G++  R        +  GY    +K   N   D W   GD  I 
Sbjct: 385 VQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIK 443
Query: 126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIE 185
            E+GY Q +GR  DII   G  I P E+E  L  HP VVE  V   PD   GEVV A + 
Sbjct: 444 DEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVV 503
Query: 186 L 186
           L
Sbjct: 504 L 504

>pdb|3B7W|A Chain A, Crystal Structure Of Human Acyl-Coa Synthetase Medium-Chain Family Member 2a, With L64p Mutation Length = 570

Iteration: 1
 Score = 68.9 bits (167), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 60/121 (49%), Gaps = 9/121 (7%)
Query: 74  VKVVDKKGNIVPMGMCGEVCYR-----GYNVMLGYYGEENKILEN---DEWFPSGDFFIL 125
           V+++D KGN++P G  G++  R        +  GY    +K   N   D W   GD  I 
Sbjct: 385 VQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWL-LGDRGIK 443
Query: 126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIE 185
            E+GY Q +GR  DII   G  I P E+E  L  HP VVE  V   PD   GEVV A + 
Sbjct: 444 DEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVV 503
Query: 186 L 186
           L
Sbjct: 504 L 504

>pdb|3A9U|A Chain A, Crystal Structures And Enzymatic Mechanisms Of A Populus Tomentosa 4- Coumarate--Coa Ligase Length = 536

Iteration: 1
 Score = 68.2 bits (165), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 42/136 (30%), Positives = 76/136 (55%), Gaps = 4/136 (2%)
Query: 69  IKHLIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGE---ENKILENDEWFPSGDFFI 124
           +++  +K+VD + G  +P    GE+C RG  +M GY  +    ++ ++ + W  +GD   
Sbjct: 361 VRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGY 420
Query: 125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANI 184
           + ++    +V R+K++I   G  + P E+E +L  HP++ +A V G+ DE  GEV VA +
Sbjct: 421 IDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFV 480
Query: 185 ELKPGASLTQDDIKTY 200
                +  T+D+IK Y
Sbjct: 481 VKSEKSQATEDEIKQY 496

>pdb|3R44|A Chain A, Mycobacterium Tuberculosis Fatty Acyl Coa Synthetase Length = 517

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 40/114 (35%), Positives = 62/114 (54%), Gaps = 3/114 (2%)
Query: 90  GEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
           GEV  +   ++  Y+   E  +   ++ WF +GD   + + GY  +  R+KD+II GGEN
Sbjct: 363 GEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGEN 422
Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYC 201
           + P EIE V+   P V E  V G+PDE+ GE+  A I +     +++  I  YC
Sbjct: 423 VYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAA-IVVADQNEVSEQQIVEYC 475

>pdb|4GXR|A Chain A, Structure Of Atp Bound Rpmatb-Bxbclm Chimera B3 Length = 503

Iteration: 1
 Score = 67.4 bits (163), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 90/207 (43%), Gaps = 31/207 (14%)
Query: 10  KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELS--SPVIALTAGAPCSPTLFNKIRDTF 67
           + TVL G PT Y  L+ S +   E   ++   +S  +P++A T     S    + + + +
Sbjct: 242 RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTH-REWSAXTGHAVLERY 300
Query: 68  GIKH------------------------LIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLG 102
           G+                          +  +V D + G  +P G  G +   G NV  G
Sbjct: 301 GMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXG 360
Query: 103 YYGEENKI---LENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT 159
           Y+           +D +F +GD   + E GY  ++GR  D++I GG N+ P EIE  +  
Sbjct: 361 YWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDA 420
Query: 160 HPDVVEAQVYGVPDERLGEVVVANIEL 186
            P VVE+ V GVP    GE V A + L
Sbjct: 421 MPGVVESAVIGVPHADFGEGVTAFVVL 447

>pdb|2D1Q|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With Mgatp Length = 548

Iteration: 1
 Score = 67.0 bits (162), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 44/232 (18%)
Query: 10  KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTL-------FN- 61
           KCT +   PT++  L  S      E+ N   +LS+ V   + GAP S  +       FN 
Sbjct: 283 KCTSVILVPTLFAILNKS------ELLN-KYDLSNLVEIASGGAPLSKEVGEAVARRFNL 335
Query: 62  -KIRDTFGIKHLIVKVV------DK---KGNIVPMGMC----------------GEVCYR 95
             +R  +G+      ++      DK    G +VP+                   GEVC +
Sbjct: 336 PGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 96  GYNVMLGYYG--EENKILENDE-WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKE 152
           G  +M GY    E  K L ++E W  +GD     E  +  +V R+K +I   G  + P E
Sbjct: 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAE 455
Query: 153 IEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           +E VL  HP + +A V GVPD   GE+  A + L+ G ++T+ ++  Y   +
Sbjct: 456 LESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQ 507

>pdb|2D1S|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 44/232 (18%)
Query: 10  KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTL-------FN- 61
           KCT +   PT++  L  S      E+ N   +LS+ V   + GAP S  +       FN 
Sbjct: 283 KCTSVILVPTLFAILNKS------ELLN-KYDLSNLVEIASGGAPLSKEVGEAVARRFNL 335
Query: 62  -KIRDTFGIKHLIVKVV------DK---KGNIVPMGMC----------------GEVCYR 95
             +R  +G+      ++      DK    G +VP+                   GEVC +
Sbjct: 336 PGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 96  GYNVMLGYYG--EENKILENDE-WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKE 152
           G  +M GY    E  K L ++E W  +GD     E  +  +V R+K +I   G  + P E
Sbjct: 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAE 455
Query: 153 IEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           +E VL  HP + +A V GVPD   GE+  A + L+ G ++T+ ++  Y   +
Sbjct: 456 LESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQ 507

>pdb|4GXQ|A Chain A, Crystal Structure Of Atp Bound Rpmatb-Bxbclm Chimera B1 Length = 506

Iteration: 1
 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 90/207 (43%), Gaps = 31/207 (14%)
Query: 10  KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELS--SPVIALTAGAPCSPTLFNKIRDTF 67
           + TVL G PT Y  L+ S +   E   ++   +S  +P++A T     S    + + + +
Sbjct: 242 RATVLMGVPTFYTRLLQSPRLTXETTGHMRLFISGSAPLLADTH-REWSAXTGHAVLERY 300
Query: 68  GIKH------------------------LIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLG 102
           G+                          +  +V D + G  +P G  G +   G NV  G
Sbjct: 301 GMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGXELPRGDIGMIEVXGPNVFXG 360
Query: 103 YYGEENKI---LENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT 159
           Y+           +D +F +GD   + E GY  ++GR  D++I GG N+ P EIE  +  
Sbjct: 361 YWRMPEXTXSEFRDDGFFITGDLGXIDERGYVHILGRGXDLVITGGFNVYPXEIESEIDA 420
Query: 160 HPDVVEAQVYGVPDERLGEVVVANIEL 186
            P VVE+ V GVP    GE V A + L
Sbjct: 421 MPGVVESAVIGVPHADFGEGVTAFVVL 447

>pdb|2D1T|A Chain A, Crystal Structure Of The Thermostable Japanese Firefly Luciferase Red-Color Emission S286n Mutant Complexed With High-Energy Intermediate Analogue Length = 548

Iteration: 1
 Score = 66.6 bits (161), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/232 (28%), Positives = 103/232 (44%), Gaps = 44/232 (18%)
Query: 10  KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTL-------FN- 61
           KCT +   PT++  L  S      E+ N   +LS+ V   + GAP S  +       FN 
Sbjct: 283 KCTNVILVPTLFAILNKS------ELLN-KYDLSNLVEIASGGAPLSKEVGEAVARRFNL 335
Query: 62  -KIRDTFGIKHLIVKVV------DK---KGNIVPMGMC----------------GEVCYR 95
             +R  +G+      ++      DK    G +VP+                   GEVC +
Sbjct: 336 PGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVK 395
Query: 96  GYNVMLGYYG--EENKILENDE-WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKE 152
           G  +M GY    E  K L ++E W  +GD     E  +  +V R+K +I   G  + P E
Sbjct: 396 GPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGYQVPPAE 455
Query: 153 IEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           +E VL  HP + +A V GVPD   GE+  A + L+ G ++T+ ++  Y   +
Sbjct: 456 LESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQ 507

>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein Length = 979

Iteration: 1
 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 83/162 (51%), Gaps = 4/162 (2%)
Query: 43  SSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVD-KKGNIVPMGMCGEVCYRGYNVML 101
           + PV+A++ G    P           +++  +K+VD   G+ +     GE+C RG+ +M 
Sbjct: 382 AGPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMK 441
Query: 102 GYY---GEENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQ 158
           GY        + ++ D W  +GD  ++ ++    +V R+K++I   G  + P E+E +L 
Sbjct: 442 GYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLI 501
Query: 159 THPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTY 200
            HPD+ +  V  + +E  GEV VA +     + L++DD+K +
Sbjct: 502 GHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQF 543

>pdb|3ETC|A Chain A, 2.1 A Structure Of Acyl-Adenylate Synthetase From Methanosarcina Acetivorans Containing A Link Between Lys256 And Cys298 Length = 580

Iteration: 1
 Score = 65.5 bits (158), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 65/236 (27%), Positives = 101/236 (42%), Gaps = 60/236 (25%)
Query: 12  TVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKH 71
           T     PT+Y  LI       E++ +     S+   A+ AG P +P +FN+  +  GIK 
Sbjct: 318 TTFCAPPTIYRFLIK------EDLSHY--NFSTLKYAVVAGEPLNPEVFNRFLEFTGIKL 369
Query: 72  L--------------------------------IVKVVDKKGNIVPMGMCGEVCYRGYNV 99
           +                                 ++++D+ G +  +G  GE+     N 
Sbjct: 370 MEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVI---NT 426
Query: 100 MLG-------YYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENII 149
           M G       +YG++ +  E   +D ++ +GD   + E+GY   VGR  DII   G  + 
Sbjct: 427 MEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGYKVG 486
Query: 150 PKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL----KPGASLT---QDDIK 198
           P E+E  L  HP V+E  + GVPD   G+V+ A I L     P  SL    QD +K
Sbjct: 487 PFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVK 542

>pdb|1ULT|A Chain A, Crystal Structure Of Tt0168 From Thermus Thermophilus Hb8 Length = 541

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 41/114 (35%), Positives = 59/114 (51%), Gaps = 5/114 (4%)
Query: 74  VKVVDKKGNIVPMG--MCGEVCYRGYNVMLGYYGEE---NKILENDEWFPSGDFFILHEN 128
           ++V D++G  VP      GEV  +G  +  GYYG E      L  D +F +GD  +  E 
Sbjct: 366 LRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEE 425
Query: 129 GYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVA 182
           GY ++  R+KD+I  GGE I   ++E  L  HP V EA V  +P  +  E  +A
Sbjct: 426 GYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLA 479

>pdb|1MDB|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb-adenylate Length = 539

Iteration: 1
 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 64/136 (47%), Gaps = 16/136 (11%)
Query: 46  VIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG 105
           +I  T G P SP   +++ D            D   ++ P G  G +  RG   + GYY 
Sbjct: 348 IIVNTQGKPMSPYDESRVWD------------DHDRDVKP-GETGHLLTRGPYTIRGYYK 394
Query: 106 EEN---KILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPD 162
            E         D ++ +GD   L  +GY  V GR KD I RGGE +  +E+E  L  HP 
Sbjct: 395 AEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPA 454
Query: 163 VVEAQVYGVPDERLGE 178
           V +A +  +PD+ LGE
Sbjct: 455 VHDAAMVSMPDQFLGE 470

>pdb|3G7S|A Chain A, Crystal Structure Of A Long-Chain-Fatty-Acid-Coa Ligase (Fadd1) From Archaeoglobus Fulgidus Length = 549

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 81  GNIVPMGMCGEVCYRGYNVMLGYYGEENKILE-------NDEWFPSGDFFILHENGYGQV 133
           G  + +G  GE+  RG N+  GY+  E +  E         ++F +GD   + E G+   
Sbjct: 375 GRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHF 434
Query: 134 VGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKP--GAS 191
             R+K++I   G  I P E+E +L  H  V +  V G PDE  GEV  A I LKP     
Sbjct: 435 QDRVKEVIKYKGYTIAPFELEALLXKHEAVXDVAVIGKPDEEAGEVPKAFIVLKPEYRGK 494
Query: 192 LTQDDIKTYCKGK 204
           + ++DI  + + +
Sbjct: 495 VDEEDIIEWVRER 507

>pdb|1MD9|A Chain A, Crystal Structure Of Dhbe In Complex With Dhb And Amp Length = 539

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 62/136 (45%), Gaps = 16/136 (11%)
Query: 46  VIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG 105
           +I  T G P SP   +++ D            D   ++ P G  G +  RG   + GYY 
Sbjct: 348 IIVNTQGKPXSPYDESRVWD------------DHDRDVKP-GETGHLLTRGPYTIRGYYK 394
Query: 106 EEN---KILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPD 162
            E         D ++ +GD   L  +GY  V GR KD I RGGE +  +E+E  L  HP 
Sbjct: 395 AEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPA 454
Query: 163 VVEAQVYGVPDERLGE 178
           V +A     PD+ LGE
Sbjct: 455 VHDAAXVSXPDQFLGE 470

>pdb|3NYQ|A Chain A, Malonyl-Coa Ligase Ternary Product Complex With Methylmalonyl-Coa And Amp Bound Length = 505

Iteration: 1
 Score = 61.2 bits (147), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 39/100 (39%), Positives = 51/100 (51%), Gaps = 4/100 (4%)
Query: 89  CGEVCYRGYNVMLGYYGEENKI---LENDEWFPSGDFFILHENGYGQVVGR-IKDIIIRG 144
            GE+  RG N+   Y    +        D +F +GD  +   +GY ++VGR   D+I  G
Sbjct: 353 VGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSG 412
Query: 145 GENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANI 184
           G  I   EIE  L  HP+V EA V G PD  LGE +VA I
Sbjct: 413 GYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWI 452

>pdb|3IPL|A Chain A, Crystal Structure Of O-Succinylbenzoic Acid-Coa Ligase From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 501

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 44/127 (34%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 55  CSPTLFNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYY--GEENKILE 112
            +P + +   DT G+    V V  K  N       GE+  +G NVM GY    +     E
Sbjct: 317 ATPEMLHARPDTVGMPSANVDVKIKNPN---KEGHGELMIKGANVMNGYLYPTDLTGTFE 373
Query: 113 NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVP 172
           N  +F +GD   +   GY  +  R KD+II GGENI P +IE V +  P + +A   G P
Sbjct: 374 NG-YFNTGDIAEIDHEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHP 432
Query: 173 DERLGEV 179
           D+  G+V
Sbjct: 433 DDTWGQV 439

>pdb|3PBK|A Chain A, Structural And Functional Studies Of Fatty Acyl-Adenylate Ligases From E. Coli And L. Pneumophila Length = 583

Iteration: 1
 Score = 57.8 bits (138), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 32/95 (33%), Positives = 54/95 (56%), Gaps = 9/95 (9%)
Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDE-----WFPSGDFFILHEN 128
           +++ ++ G  V   + G +C  G ++  GY+G++   +  DE     W  +GD   L  +
Sbjct: 395 IEIRNEAGXPVAERVVGHICISGPSLXSGYFGDQ---VSQDEIAATGWLDTGDLGYLL-D 450
Query: 129 GYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDV 163
           GY  V GRIKD+II  G NI P++IEY+ +  P++
Sbjct: 451 GYLYVTGRIKDLIIIRGRNIWPQDIEYIAEQEPEI 485

>pdb|2V7B|A Chain A, Crystal Structures Of A Benzoate Coa Ligase From Burkholderia Xenovorans Lb400 Length = 529

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 47/241 (19%)
Query: 2   ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPV-IALTAGAPCSPTLF 60
           I   +V+ + TV YG PT+Y +++ S        PN+       + I  +AG      + 
Sbjct: 266 IFARLVEHRPTVFYGVPTLYANMLVS--------PNLPARADVAIRICTSAGEALPREIG 317
Query: 61  NKIRDTFGIK-----------HLI---------------------VKVVDKKGNIVPMGM 88
            +    FG +           H+                      +++ D+ G+ VP G 
Sbjct: 318 ERFTAHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGE 377
Query: 89  CGEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
            G++  +G +  + Y+   E+++     EW  SGD +    NG     GR  D++   G+
Sbjct: 378 VGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQ 437
Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEV---VVANIELKPGASLTQDDIKTYCKG 203
            + P E+E VL  H  V+EA V GV    L +    VV   E  P + +  +++K + K 
Sbjct: 438 YVSPVEVEMVLVQHDAVLEAAVVGVDHGGLVKTRAFVVLKREFAP-SEILAEELKAFVKD 496
Query: 204 K 204
           +
Sbjct: 497 R 497

>pdb|2P2M|A Chain A, Acetyl-Coa Synthetase, R194a Mutation Length = 652

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
           SGD     E+GY  + GR+ D++   G  +   EIE  L  HP + EA V G+P    G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 179 VVVANIELKPG 189
            + A + L  G
Sbjct: 558 AIYAYVTLNHG 568

>pdb|2P20|A Chain A, Acetyl-Coa Synthetase, R584a Mutation Length = 652

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
           SGD     E+GY  + GR+ D++   G  +   EIE  L  HP + EA V G+P    G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 179 VVVANIELKPG 189
            + A + L  G
Sbjct: 558 AIYAYVTLNHG 568

>pdb|1PG3|A Chain A, Acetyl Coa Synthetase, Acetylated On Lys609 Length = 652

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
           SGD     E+GY  + GR+ D++   G  +   EIE  L  HP + EA V G+P    G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 179 VVVANIELKPG 189
            + A + L  G
Sbjct: 558 AIYAYVTLNHG 568

>pdb|2P2B|A Chain A, Acetyl-coa Synthetase, V386a Mutation Length = 652

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
           SGD     E+GY  + GR+ D++   G  +   EIE  L  HP + EA V G+P    G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 179 VVVANIELKPG 189
            + A + L  G
Sbjct: 558 AIYAYVTLNHG 568

>pdb|2P2Q|A Chain A, Acetyl-Coa Synthetase, R584e Mutation Length = 652

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
           SGD     E+GY  + GR+ D++   G  +   EIE  L  HP + EA V G+P    G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 179 VVVANIELKPG 189
            + A + L  G
Sbjct: 558 AIYAYVTLNHG 568

>pdb|2P2J|A Chain A, Acetyl-Coa Synthetase, K609a Mutation Length = 652

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
           SGD     E+GY  + GR+ D++   G  +   EIE  L  HP + EA V G+P    G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 179 VVVANIELKPG 189
            + A + L  G
Sbjct: 558 AIYAYVTLNHG 568

>pdb|2P2F|A Chain A, Acetyl-coa Synthetase, Wild-type With Acetate, Amp, And Coa Bound Length = 652

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%)
Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
           SGD     E+GY  + GR+ D++   G  +   EIE  L  HP + EA V G+P    G+
Sbjct: 498 SGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQ 557
Query: 179 VVVANIELKPG 189
            + A + L  G
Sbjct: 558 AIYAYVTLNHG 568

>pdb|2VSQ|A Chain A, Structure Of Surfactin A Synthetase C (Srfa-C), A Nonribosomal Peptide Synthetase Termination Module Length = 1304

Iteration: 1
 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 11/145 (7%)
Query: 69  IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEEN----KILEN-----DEWFPS 119
           I +  V +++++  + P G  GE+C  G  V  GY    +    K +EN     +  + +
Sbjct: 783 ISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGETLYRT 842
Query: 120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEV 179
           GD      +G  +  GRI D +   G  I  +EIE  LQ +P V +A V  V D      
Sbjct: 843 GDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVV--VADRHESGD 900
Query: 180 VVANIELKPGASLTQDDIKTYCKGK 204
              N  L     L+ +D+K + K +
Sbjct: 901 ASINAYLVNRTQLSAEDVKAHLKKQ 925

>pdb|3KXW|A Chain A, The Crystal Structure Of Fatty Acid Amp Ligase From Legionella Pneumophila Length = 590

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 52/101 (51%), Gaps = 15/101 (14%)
Query: 74  VKVVDKKGNIVP--MGMCGEVCYRGYNVMLGYYGEENKI-------LENDE----WFPSG 120
           VK++D    ++P      GE+  +  +V  GY+ +  +        +++DE    +  +G
Sbjct: 383 VKIIDP-DTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTG 441
Query: 121 DFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHP 161
           D   LHEN    V GRIKD+II  G+N  P++IE+ L   P
Sbjct: 442 DLGFLHENEL-YVTGRIKDLIIIYGKNHYPQDIEFSLXHSP 481

>pdb|1RY2|A Chain A, Crystal Structure Of Yeast Acetyl-Coenzyme A Synthetase In Complex With Amp Length = 663

Iteration: 1
 Score = 40.8 bits (94), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 40/78 (51%)
Query: 116 WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDER 175
           ++ +GD     ++GY  ++GR+ D++   G  +   EIE  +   P V E  V G  D+ 
Sbjct: 504 YYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDL 563
Query: 176 LGEVVVANIELKPGASLT 193
            G+ V A + LK  +S +
Sbjct: 564 TGQAVAAFVVLKNKSSWS 581

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	204
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	6e-67
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	4e-66
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	2e-65
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	2e-63
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	3e-62
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	2e-55
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	2e-55
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	9e-55
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	9e-53
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	3e-49
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	2e-48
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	3e-48
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	3e-48
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	2e-45
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	3e-40
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	4e-40
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	3e-30
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	5e-27
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	2e-23
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	1e-16
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	8e-10
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	2e-08
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	9e-06
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	1e-05
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	1e-04
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	6e-04
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	6e-04
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	7e-04

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A Length = 539

 Score =  213 bits (544), Expect = 6e-67
 Identities = 56/237 (23%), Positives = 89/237 (37%), Gaps = 47/237 (19%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEE-LSSPVIALTAGAPCSPTLFNKIR 64
           I +EK T+    P + +  +        +  +   + LSS  +    GA  S     +++
Sbjct: 268 IEREKVTITALVPPLAMVWM--------DAASSRRDDLSSLQVLQVGGAKFSAEAARRVK 319

Query: 65  DTFGIK----------------------------------HLIVKVVDKKGNIVPMGMCG 90
             FG                                    +   +V D     V  G  G
Sbjct: 320 AVFGCTLQQVFGMAEGLVNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETG 379

Query: 91  EVCYRGYNVMLGYYG--EEN-KILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
            +  RG   + GYY   E N      D ++ +GD   L  +GY  V GR KD I RGGE 
Sbjct: 380 HLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGYIVVEGRAKDQINRGGEK 439

Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           +  +E+E  L  HP V +A +  +PD+ LGE     I  +  A     ++K + + +
Sbjct: 440 VAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA-PKAAELKAFLRER 495

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} PDB: 3o82_A* 3o84_A* Length = 544

 Score =  211 bits (539), Expect = 4e-66
 Identities = 53/237 (22%), Positives = 90/237 (37%), Gaps = 46/237 (19%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEE-LSSPVIALTAGAPCSPTLFNKIR 64
           I + +  +    P+  +  +        E     ++ + S  +    GA    +L  ++ 
Sbjct: 277 IQRHQVNMASLVPSAVIMWL--------EKAAQYKDQIQSLKLLQVGGASFPESLARQVP 328

Query: 65  DTFGIK----------------------------------HLIVKVVDKKGNIVPMGMCG 90
           +    K                                     +K+VD++   VP G  G
Sbjct: 329 EVLNCKLQQVFGMAEGLVNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIG 388

Query: 91  EVCYRGYNVMLGYYG--EEN-KILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
            +  RG     GYY   E N ++ + D ++ SGD      +G  +VVGRIKD I RGGE 
Sbjct: 389 MLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQRTPDGNLRVVGRIKDQINRGGEK 448

Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           I  +EIE ++  HP+V+ A +  + DE+ GE   A I  +          +   +  
Sbjct: 449 IASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRNPELKAVVLRRHLMELG 505

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli} Length = 617

 Score =  211 bits (539), Expect = 2e-65
 Identities = 58/236 (24%), Positives = 89/236 (37%), Gaps = 44/236 (18%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           I K +  V    P      + ++            +L+S  +    GA  S TL  +I  
Sbjct: 270 IEKHQVNVTALVPPAVSLWLQALIEGESR-----AQLASLKLLQVGGARLSATLAARIPA 324

Query: 66  TFGIK----------------------------------HLIVKVVDKKGNIVPMGMCGE 91
             G +                                     V V D +GN +P G  G 
Sbjct: 325 EIGCQLQQVFGMAEGLVNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGR 384

Query: 92  VCYRGYNVMLGYYG--EEN-KILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENI 148
           +  RG     GYY   + N    + + ++ SGD   +   GY  V GR KD I RGGE I
Sbjct: 385 LMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLISIDPEGYITVQGREKDQINRGGEKI 444

Query: 149 IPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
             +EIE +L  HP V+ A +  + DE +GE   A + +K    L    ++ + + +
Sbjct: 445 AAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKEP--LRAVQVRRFLREQ 498

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X* Length = 504

 Score =  203 bits (518), Expect = 2e-63
 Identities = 60/236 (25%), Positives = 93/236 (39%), Gaps = 46/236 (19%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEE---LSSPVIALTAGAPCSPTLFNK 62
           + +E+ T L+ TPT    L ++           A     L S      AGA     +   
Sbjct: 240 VQQEQVTSLFATPTHLDALAAA--------AAHAGSSLKLDSLRHVTFAGATMPDAVLET 291

Query: 63  IRDTFGIK-----------------------------HLIVKVVDKKG---NIVPMGMCG 90
           +      +                                V++V   G    IV  G  G
Sbjct: 292 VHQHLPGEKVNIYGTTEAMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEG 351

Query: 91  EVCYRGYN-VMLGYYGEENKILE--NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
           E+     +   +GY  +     E   D W+ + D  +    G  +++GR+ D+II GGEN
Sbjct: 352 ELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWTPEGTVRILGRVDDMIISGGEN 411

Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG 203
           I P EIE VL T P V E  V G+ D+R G+ V A +  + G +L+ D + T+C+ 
Sbjct: 412 IHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRS 467

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* Length = 503

 Score =  200 bits (510), Expect = 3e-62
 Identities = 61/233 (26%), Positives = 93/233 (39%), Gaps = 45/233 (19%)

Query: 9   EKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEE-LSSPVIALTAGAPCSPTLFNKIRDTF 67
            + TVL G PT Y  L+ S        P + +E      + ++  AP       +     
Sbjct: 241 ARATVLMGVPTFYTRLLQS--------PRLTKETTGHMRLFISGSAPLLADTHREWSAKT 292

Query: 68  GIK--------------------------------HLIVKVVDK-KGNIVPMGMCGEVCY 94
           G                                   +  +V D   G  +P G  G +  
Sbjct: 293 GHAVLERYGMTETNMNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEV 352

Query: 95  RGYNVMLGYYG--EEN-KILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPK 151
           +G NV  GY+   E+      +D +F +GD   + E GY  ++GR KD++I GG N+ PK
Sbjct: 353 KGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKIDERGYVHILGRGKDLVITGGFNVYPK 412

Query: 152 EIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           EIE  +   P VVE+ V GVP    GE V A +    GA++ +  +     G+
Sbjct: 413 EIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQ 465

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A Length = 517

 Score =  182 bits (464), Expect = 2e-55
 Identities = 57/236 (24%), Positives = 89/236 (37%), Gaps = 48/236 (20%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAPCSPTLFNKIR 64
           IV+E+  +    P +   +           P  AE +       +T GAP    L     
Sbjct: 254 IVEERVCIGGAVPAILNFMRQV--------PEFAELDAPDFRYFITGGAPMPEALIKIYA 305

Query: 65  DTFGIK----------------------------------HLIVKVVDKKGNIVPMGMCG 90
               I+                                     V V    G I   G  G
Sbjct: 306 A-KNIEVVQGYALTESCGGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHGE-G 363

Query: 91  EVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENI 148
           EV  +   ++  Y+   E  +   ++ WF +GD   + + GY  +  R+KD+II GGEN+
Sbjct: 364 EVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEIDDEGYLYIKDRLKDMIISGGENV 423

Query: 149 IPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
            P EIE V+   P V E  V G+PDE+ GE+  A + +     +++  I  YC  +
Sbjct: 424 YPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQIVEYCGTR 478

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A* Length = 505

 Score =  182 bits (463), Expect = 2e-55
 Identities = 56/238 (23%), Positives = 93/238 (39%), Gaps = 44/238 (18%)

Query: 7   VKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDT 66
           + +  T+L+G PTMY  +  ++       P +A+ L+   + ++  A        +I   
Sbjct: 240 LNDGATMLFGVPTMYHRIAETL----PADPELAKALAGARLLVSGSAALPVHDHERIAAA 295

Query: 67  FGIK--------------------------------HLIVKVVDKKGNIVP---MGMCGE 91
            G +                                 + +++V++ G  +        GE
Sbjct: 296 TGRRVIERYGMTETLMNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGE 355

Query: 92  VCYRGYNVMLGYYG--EEN-KILENDEWFPSGDFFILHENGYGQVVGR-IKDIIIRGGEN 147
           +  RG N+   Y    +        D +F +GD  +   +GY ++VGR   D+I  GG  
Sbjct: 356 IQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMAVRDPDGYVRIVGRKATDLIKSGGYK 415

Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL-KPGASLTQDDIKTYCKGK 204
           I   EIE  L  HP+V EA V G PD  LGE +VA I    P A      +  +   +
Sbjct: 416 IGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHVAAR 473

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} Length = 509

 Score =  180 bits (460), Expect = 9e-55
 Identities = 58/232 (25%), Positives = 86/232 (37%), Gaps = 42/232 (18%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNK--- 62
           I   K TV+     M  +++    P          +L+S         P +   F     
Sbjct: 244 IEAHKVTVMAEFAPMLGNILDQAAP---------AQLASLRAVTGLDTPETIERFEATCP 294

Query: 63  ---IRDTFG-----------------------IKHLIVKVVDKKGNIVPMGMCGEVCYRG 96
                 TFG                       +    V VVD +   +P G  GE+  RG
Sbjct: 295 NATFWATFGQSETSGLSTFAPYRDRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRG 354

Query: 97  YNVMLGYYG--EENKILENDEWFPSGDFFILHENGYGQVVGRI--KDIIIRGGENIIPKE 152
             V  GY+      +    + W  +GD      +GY    GR   K++I  GGEN+ P E
Sbjct: 355 PTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDADGYLFYAGRAPEKELIKTGGENVYPAE 414

Query: 153 IEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           +E  L+ HP + +A V GVPD +  E + A    KPG S+  D +  +    
Sbjct: 415 VEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASL 466

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp} Length = 501

 Score =  175 bits (446), Expect = 9e-53
 Identities = 49/237 (20%), Positives = 77/237 (32%), Gaps = 55/237 (23%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEE-LSSPVIALTAGAPCSPTLFNK 62
             I  E+ T +   P     L+                 L      L  GA  S T+   
Sbjct: 245 TMIKNERITHISLVPQTLNWLMQQ--------GLHEPYNLQK---ILLGGAKLSATMIET 293

Query: 63  IRDTFG---------------------------------IKHLIVKVVDKKGNIVPMGMC 89
                                                    ++ VK+ +           
Sbjct: 294 ALQYNLPIYNSFGMTETCSQFLTATPEMLHARPDTVGMPSANVDVKIKNPNKEGH----- 348

Query: 90  GEVCYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGEN 147
           GE+  +G NVM GY    +     E + +F +GD   +   GY  +  R KD+II GGEN
Sbjct: 349 GELMIKGANVMNGYLYPTDLTGTFE-NGYFNTGDIAEIDHEGYVMIYDRRKDLIISGGEN 407

Query: 148 IIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
           I P +IE V +  P + +A   G PD+  G+V       +    +++  +  Y    
Sbjct: 408 IYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSESD--ISKAQLIAYLSKH 462

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans} Length = 529

 Score =  166 bits (423), Expect = 3e-49
 Identities = 54/237 (22%), Positives = 97/237 (40%), Gaps = 47/237 (19%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAE-ELSSPVIALTAGAPCSPTLFNKIR 64
           +V+ + TV YG PT+Y +++ S        PN+      +  I  +AG      +  +  
Sbjct: 270 LVEHRPTVFYGVPTLYANMLVS--------PNLPARADVAIRICTSAGEALPREIGERFT 321

Query: 65  DTFGIK-----------HLI---------------------VKVVDKKGNIVPMGMCGEV 92
             FG +           H+                      +++ D+ G+ VP G  G++
Sbjct: 322 AHFGCEILDGIGSTEMLHIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDL 381

Query: 93  CYRGYNVMLGYYG--EENKILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIP 150
             +G +  + Y+   E+++     EW  SGD +    NG     GR  D++   G+ + P
Sbjct: 382 YIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLPNGCYVYAGRSDDMLKVSGQYVSP 441

Query: 151 KEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS---LTQDDIKTYCKGK 204
            E+E VL  H  V+EA V GV          A + LK   +   +  +++K + K +
Sbjct: 442 VEVEMVLVQHDAVLEAAVVGVDHGG-LVKTRAFVVLKREFAPSEILAEELKAFVKDR 497

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} PDB: 1ba3_A 1lci_A* 3ies_A* 3iep_A* 3ier_A* 3qya_A Length = 550

 Score =  164 bits (418), Expect = 2e-48
 Identities = 57/238 (23%), Positives = 97/238 (40%), Gaps = 44/238 (18%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKI 63
           R +   K       PT++     S   L ++      +LS+     + GAP S  +   +
Sbjct: 275 RSLQDYKIQSALLVPTLFSFFAKS--TLIDK-----YDLSNLHEIASGGAPLSKEVGEAV 327

Query: 64  RDTFGIKHLI---------------------------------VKVVD-KKGNIVPMGMC 89
              F +  +                                   KVVD   G  + +   
Sbjct: 328 AKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQR 387

Query: 90  GEVCYRGYNVMLGYYG--EENK-ILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
           GE+C RG  +M GY    E    +++ D W  SGD     E+ +  +V R+K +I   G 
Sbjct: 388 GELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDEHFFIVDRLKSLIKYKGY 447

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
            + P E+E +L  HP++ +A V G+PD+  GE+  A + L+ G ++T+ +I  Y   +
Sbjct: 448 QVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQ 505

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A* Length = 548

 Score =  164 bits (417), Expect = 3e-48
 Identities = 58/238 (24%), Positives = 97/238 (40%), Gaps = 44/238 (18%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKI 63
           + +   KCT +   PT++  L  S   L  +      +LS+ V   + GAP S  +   +
Sbjct: 277 KTLQDYKCTSVILVPTLFAILNKS--ELLNK-----YDLSNLVEIASGGAPLSKEVGEAV 329

Query: 64  RDTFGIKHLI---------------------------------VKVVD-KKGNIVPMGMC 89
              F +  +                                   KV+D      +     
Sbjct: 330 ARRFNLPGVRQGYGLTETTSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRR 389

Query: 90  GEVCYRGYNVMLGYYG--EENK-ILENDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
           GEVC +G  +M GY    E  K +++ + W  +GD     E  +  +V R+K +I   G 
Sbjct: 390 GEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGYYDEEKHFFIVDRLKSLIKYKGY 449

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK 204
            + P E+E VL  HP + +A V GVPD   GE+  A + L+ G ++T+ ++  Y   +
Sbjct: 450 QVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQ 507

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304} Length = 549

 Score =  164 bits (417), Expect = 3e-48
 Identities = 57/251 (22%), Positives = 97/251 (38%), Gaps = 55/251 (21%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKI 63
            +I K K T  +  P     L+++++   +       + S   +  T   P +P L  K+
Sbjct: 262 ENIEKYKGTFSWAVPPALNVLVNTLESSNKTY-----DWSYLKVFATGAWPVAPALVEKL 316

Query: 64  RDTFGIKHLI----------------------------------------VKVVDK-KGN 82
                 K                                           +KV+    G 
Sbjct: 317 LKLAAEKCNNPRLRHNQIWGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGR 376

Query: 83  IVPMGMCGEVCYRGYNVMLGYYG--EENK-----ILENDEWFPSGDFFILHENGYGQVVG 135
            + +G  GE+  RG N+  GY+   +EN+       +  ++F +GD   + E G+     
Sbjct: 377 ELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKGRKFFRTGDVGFIDEEGFLHFQD 436

Query: 136 RIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG--ASLT 193
           R+K++I   G  I P E+E +L  H  V++  V G PDE  GEV  A I LKP     + 
Sbjct: 437 RVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGKVD 496

Query: 194 QDDIKTYCKGK 204
           ++DI  + + +
Sbjct: 497 EEDIIEWVRER 507

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A* Length = 536

 Score =  156 bits (397), Expect = 2e-45
 Identities = 59/243 (24%), Positives = 99/243 (40%), Gaps = 49/243 (20%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKI 63
             I K K ++    P + + +  S  P  ++      +LSS  +  + GAP    L + +
Sbjct: 265 GLIEKYKVSIAPVVPPVMMSIAKS--PDLDK-----HDLSSLRMIKSGGAPLGKELEDTV 317

Query: 64  RDTFGIKHLI--------------------------------------VKVVDK-KGNIV 84
           R  F    L                                       +K+VD   G  +
Sbjct: 318 RAKFPQARLGQGYGMTEAGPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASL 377

Query: 85  PMGMCGEVCYRGYNVMLGYYG--EENK-ILENDEWFPSGDFFILHENGYGQVVGRIKDII 141
           P    GE+C RG  +M GY    E     ++ + W  +GD   + ++    +V R+K++I
Sbjct: 378 PRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHTGDIGYIDDDDELFIVDRLKELI 437

Query: 142 IRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYC 201
              G  + P E+E +L  HP++ +A V G+ DE  GEV VA +     +  T+D+IK Y 
Sbjct: 438 KYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQYI 497

Query: 202 KGK 204
             +
Sbjct: 498 SKQ 500

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A* Length = 541

 Score =  142 bits (361), Expect = 3e-40
 Identities = 54/251 (21%), Positives = 92/251 (36%), Gaps = 56/251 (22%)

Query: 2   ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFN 61
           +      E  T   G PT+++ L        + + +    L +    +  G+    +L  
Sbjct: 259 LVELFDGEGVTFTAGVPTVWLALA-------DYLESTGHRLKTLRRLVVGGSAAPRSLIA 311

Query: 62  KIRDTFGIK------------------------------------------HLI-VKVVD 78
           +     G++                                           L+ ++V D
Sbjct: 312 RFER-MGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVAD 370

Query: 79  KKGNIVPM-GM-CGEVCYRGYNVMLGYYGEE---NKILENDEWFPSGDFFILHENGYGQV 133
           ++G  VP  G   GEV  +G  +  GYYG E      L  D +F +GD  +  E GY ++
Sbjct: 371 EEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEI 430

Query: 134 VGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT 193
             R+KD+I  GGE I   ++E  L  HP V EA V  +P  +  E  +A +  +      
Sbjct: 431 KDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTP 490

Query: 194 QDDIKTYCKGK 204
           ++  +   K  
Sbjct: 491 EELNEHLLKAG 501

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana} Length = 979

 Score =  144 bits (365), Expect = 4e-40
 Identities = 56/242 (23%), Positives = 102/242 (42%), Gaps = 47/242 (19%)

Query: 4   RHIVKEKCTVLYGTPTMYVDLI----------SSIQ-------PLTEEMPNIAEEL---- 42
             I + K TV    P + + +           SSI+       PL +E+ +         
Sbjct: 312 ELIQRCKVTVAPMVPPIVLAIAKSSETEKYDLSSIRVVKSGAAPLGKELEDAVNAKFPNA 371

Query: 43  ----------SSPVIALTAGAPCSPTLFNK------IRDTFGIKHLIVKVVD-KKGNIVP 85
                     + PV+A++ G    P           +R+        +K+VD   G+ + 
Sbjct: 372 KLGQGYGMTEAGPVLAMSLGFAKEPFPVKSGACGTVVRNA------EMKIVDPDTGDSLS 425

Query: 86  MGMCGEVCYRGYNVMLGYYG--EENK-ILENDEWFPSGDFFILHENGYGQVVGRIKDIII 142
               GE+C RG+ +M GY          ++ D W  +GD  ++ ++    +V R+K++I 
Sbjct: 426 RNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHTGDIGLIDDDDELFIVDRLKELIK 485

Query: 143 RGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
             G  + P E+E +L  HPD+ +  V  + +E  GEV VA +     + L++DD+K +  
Sbjct: 486 YKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQFVS 545

Query: 203 GK 204
            +
Sbjct: 546 KQ 547

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A* Length = 570

 Score =  115 bits (290), Expect = 3e-30
 Identities = 57/241 (23%), Positives = 86/241 (35%), Gaps = 52/241 (21%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           +       + G P +Y  L+   Q L+      + +       +T G    P      R 
Sbjct: 293 LSSYPIKSMMGAPIVYRMLLQ--QDLS------SYKFPHLQNCVTVGESLLPETLENWRA 344

Query: 66  TFGIK-----------HLI---------------------VKVVDKKGNIVPMGMCGEVC 93
             G+                                    V+++D KGN++P G  G++ 
Sbjct: 345 QTGLDIRESYGQTETGLTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIG 404

Query: 94  YRG-----YNVMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
            R        +  GY    +K   N   +++  GD  I  E+GY Q +GR  DII   G 
Sbjct: 405 IRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDRGIKDEDGYFQFMGRADDIINSSGY 464

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ-----DDIKTYC 201
            I P E+E  L  HP VVE  V   PD   GEVV A + L              +++ + 
Sbjct: 465 RIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKELQQHV 524

Query: 202 K 202
           K
Sbjct: 525 K 525

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans} Length = 580

 Score =  106 bits (266), Expect = 5e-27
 Identities = 57/239 (23%), Positives = 96/239 (40%), Gaps = 50/239 (20%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNK--- 62
             K   T     PT+Y  LI   + L+          S+   A+ AG P +P +FN+   
Sbjct: 312 ASKYGVTTFCAPPTIYRFLIK--EDLS------HYNFSTLKYAVVAGEPLNPEVFNRFLE 363

Query: 63  -----IRDTFG---------------IK---------HLIVKVVDKKGNIVPMGMCGEVC 93
                + + FG                K            ++++D+ G +  +G  GE+ 
Sbjct: 364 FTGIKLMEGFGQTETVVTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIV 423

Query: 94  YRGYN-----VMLGYYGEENKILEN--DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGE 146
                     + + Y  +  +  E   D ++ +GD   + E+GY   VGR  DII   G 
Sbjct: 424 INTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDMAWMDEDGYLWFVGRADDIIKTSGY 483

Query: 147 NIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQD---DIKTYCK 202
            + P E+E  L  HP V+E  + GVPD   G+V+ A I L    + +     +++ + K
Sbjct: 484 KVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQDHVK 542

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A* Length = 590

 Score = 76.6 bits (189), Expect = 1e-16
 Identities = 34/139 (24%), Positives = 60/139 (43%), Gaps = 21/139 (15%)

Query: 74  VKVVDKKGNI-VPMGMCGEVCYRGYNVMLGYYG--EENK---------ILENDEWFPSGD 121
           VK++D    I       GE+  +  +V  GY+   EE +            +  +  +GD
Sbjct: 383 VKIIDPDTLIPCDFDQVGEIWVQSNSVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGD 442

Query: 122 FFILHENGYGQ--VVGRIKDIIIRGGENIIPKEIEY-VLQTHPDVVEAQV--YGVPDERL 176
              LHE    +  V GRIKD+II  G+N  P++IE+ ++ +    V  +   + + +E  
Sbjct: 443 LGFLHE---NELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVLGKCAAFVIQEEHE 499

Query: 177 GEVVVANIELKPGASLTQD 195
            ++ V   E+K        
Sbjct: 500 YKLTVM-CEVKNRFMDDVA 517

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A* Length = 652

 Score = 56.4 bits (137), Expect = 8e-10
 Identities = 36/163 (22%), Positives = 62/163 (38%), Gaps = 17/163 (10%)

Query: 44  SPVIALTAGAPCSPTL-FNKIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGY--NVM 100
           +P+         S T  F      FG++     +VD +G+       G +          
Sbjct: 424 TPLPGAIELKAGSATRPF------FGVQ---PALVDNEGHPQEGATEGNLVITDSWPGQA 474

Query: 101 LGYYGEENKILEN-----DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEY 155
              +G+  +  +         + SGD     E+GY  + GR+ D++   G  +   EIE 
Sbjct: 475 RTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIES 534

Query: 156 VLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIK 198
            L  HP + EA V G+P    G+ + A + L  G   + +   
Sbjct: 535 ALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELYA 577

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1 Length = 663

 Score = 52.2 bits (126), Expect = 2e-08
 Identities = 21/70 (30%), Positives = 35/70 (50%)

Query: 127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL 186
           ++GY  ++GR+ D++   G  +   EIE  +   P V E  V G  D+  G+ V A + L
Sbjct: 515 KDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVL 574

Query: 187 KPGASLTQDD 196
           K  +S +   
Sbjct: 575 KNKSSWSTAT 584

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia} Length = 443

 Score = 44.2 bits (105), Expect = 9e-06
 Identities = 40/232 (17%), Positives = 78/232 (33%), Gaps = 67/232 (28%)

Query: 10  KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI 69
           +  ++  TP+  ++LI  +         +    SS  I +    P +  L N++    GI
Sbjct: 184 EPKIILVTPSYMLNLIDEM----VRQ-GMDPAESSLKIGIFGAEPWTQALRNEVETRVGI 238

Query: 70  K-------------------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGY 97
                                           H   +++D   G ++P G  GE+ +   
Sbjct: 239 DALDIYGLSEVMGPGVACECVETKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSL 298

Query: 98  NVMLGYYGEENKILENDEWFP-----SGDFFILH-ENG-----YGQVVGRIKD-IIIRGG 145
                            E  P     + D   L            ++ GR  D +I+RG 
Sbjct: 299 TK---------------EAMPVIRYRTRDLTALLPPTARAMRRLAKITGRSDDMLIVRG- 342

Query: 146 ENIIPKEIEYVLQTHPDVV-EAQVYGVPDERLGEVVVANIELKPGASLTQDD 196
            N+ P +IE ++   P +  + Q+    D  +  + +  +EL+  A+ +  D
Sbjct: 343 VNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDL-AVELRSEAAASVTD 393

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A* Length = 437

 Score = 43.8 bits (104), Expect = 1e-05
 Identities = 38/237 (16%), Positives = 72/237 (30%), Gaps = 65/237 (27%)

Query: 10  KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI 69
           +  ++  TP+  + +   I    E    +    SS  I +    P +  +   I    GI
Sbjct: 182 RPDIIMVTPSYMLSIADEI----ERQ-GLDPVQSSLRIGIFGAEPWTNDMRVAIEQRMGI 236

Query: 70  K-------------------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGY 97
                                           H   +++D + G ++P G  GE+ +   
Sbjct: 237 DAVDIYGLSEVMGPGVASECVETKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSL 296

Query: 98  NVMLGYYGEENKILENDEWFP-----SGDFFILHENG------YGQVVGRIKDIIIRGGE 146
                            E  P     + D   L            ++ GR  D++I  G 
Sbjct: 297 TK---------------EALPIIRYRTRDLTRLLPGTARTMRRMEKITGRSDDMMIVRGV 341

Query: 147 NIIPKEIEYVLQTHPDVV-EAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
           N+ P +IE  L     +    Q+    +  L  + + N+E  P  +     I+   +
Sbjct: 342 NVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTL-NVEPCPETAPDTAAIQVAKQ 397

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A* Length = 436

 Score = 41.1 bits (97), Expect = 1e-04
 Identities = 37/239 (15%), Positives = 73/239 (30%), Gaps = 67/239 (28%)

Query: 10  KCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI 69
           K T L+  P+  + L        +E   I    ++    +    P +     KI     +
Sbjct: 178 KTTALHAIPSYAIRLAEVF----QEE-GIDPRETTLKTLVIGAEPHTDEQRRKIERMLNV 232

Query: 70  K------------------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGYN 98
           K                                +V+++D + G  VP G  GE+     +
Sbjct: 233 KAYNSFGMTEMNGPGVAFECQEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLD 292

Query: 99  VMLGYYGEENKILENDEWFP-----SGDFFILHENG---------YGQVVGRIKDIIIRG 144
                           E  P     + D   +               ++ GR  D+ I  
Sbjct: 293 R---------------EMMPLIRYRTRDLTRILPGKCPCGRTHLRIDRIKGRSDDMFIIK 337

Query: 145 GENIIPKEIEYVLQTHPDVV-EAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK 202
           G NI P ++E +L   P++     +         E++V  +EL   ++    +++   +
Sbjct: 338 GVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIV-EVELSDLSTDNYIELEKIRR 395

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A* Length = 512

 Score = 39.0 bits (92), Expect = 6e-04
 Identities = 40/268 (14%), Positives = 70/268 (26%), Gaps = 90/268 (33%)

Query: 2   ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFN 61
           +   + +    V   TP+         +    E       L +    L  G      +  
Sbjct: 227 LFASLEQSDIQVWTSTPSFA-------EMCLMEASFSESMLPNMKTFLFCGEVLPNEVAR 279

Query: 62  KIRDTFGIKHLI--------------------------------------VKVVDKKGNI 83
           K+ + F    ++                                      + ++ + G I
Sbjct: 280 KLIERFPKATIMNTYGPTEATVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTI 339

Query: 84  VPMGMCGEVCYRGYNVMLGYYG-----EENKILENDE---------WFPSGDFFILHENG 129
            P G  GE+   G +V +GY G     E+   + + E         +  +G  F      
Sbjct: 340 APDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAYKTGDAGYVENGLLFYN---- 395

Query: 130 YGQVVGRI----KDIIIRG-----GENIIPKEIEYVLQTHPDVVEAQVYGVPDE----RL 176
                GR+    K   + G      E      IE+ L+    V  A +  +        L
Sbjct: 396 -----GRLDFQIK---LHGYRMELEE------IEHHLRACSYVEGAVIVPIKKGEKYDYL 441

Query: 177 GEVVVANIELKPGASLTQDDIKTYCKGK 204
             VVV               IK     +
Sbjct: 442 LAVVVPGEHSFEKEFKLTSAIKKELNER 469

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A Length = 480

 Score = 38.9 bits (91), Expect = 6e-04
 Identities = 21/81 (25%), Positives = 34/81 (41%), Gaps = 20/81 (24%)

Query: 73  IVKVVDKKGNI-VPMGMCGEVCYRGYNVMLGYYG--EENK------------ILENDEWF 117
           IV++VD    I  P G  GE+   G NV  GY+   +E++                  W 
Sbjct: 403 IVRIVDSDTCIECPDGTVGEIWVHGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWL 462

Query: 118 PSGDFFILHENGYGQ--VVGR 136
            +GD   + +   G+  ++GR
Sbjct: 463 RTGDSGFVTD---GKMFIIGR 480

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* Length = 511

 Score = 38.6 bits (91), Expect = 7e-04
 Identities = 36/265 (13%), Positives = 64/265 (24%), Gaps = 92/265 (34%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           + K    V   TP+         Q    +     + L      +  G     ++   + +
Sbjct: 230 LKKSGLNVWTSTPSFV-------QMCLMDPGFSQDLLPHADTFMFCGEVLPVSVAKALLE 282

Query: 66  TFGIKHLI--------------------------------------VKVVDKKGNIVPMG 87
            F    +                                       + ++D++G  +P G
Sbjct: 283 RFPKAKIFNTYGPTEATVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEG 342

Query: 88  MCGEVCYRGYNVMLGYYG-----EENKILENDE----------WFPSGDFFILHENGYGQ 132
             GE+   G +V  GY G     E+     ++           +   G  F         
Sbjct: 343 EKGEIVIAGPSVSRGYLGEPELTEK-AFFSHEGQWAYRTGDAGFIQDGQIFCQ------- 394

Query: 133 VVGRI----KDIIIRG-----GENIIPKEIEYVLQTHPDVVEAQVYGVPDE----RLGEV 179
             GR+    K   + G      E      IE+ ++    V  A V           L   
Sbjct: 395 --GRLDFQIK---LHGYRMELEE------IEFHVRQSQYVRSAVVIPYQPNGTVEYLIAA 443

Query: 180 VVANIELKPGASLTQDDIKTYCKGK 204
           +V               IK      
Sbjct: 444 IVPEEHEFEKEFQLTSAIKKELAAS 468

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	204
3ni2_A	536	4-coumarate:COA ligase; 4CL, phenylpropanoid biosy	100.0
1mdb_A	539	2,3-dihydroxybenzoate-AMP ligase; adenylation doma	100.0
3etc_A	580	AMP-binding protein; adenylate-forming acyl-COA sy	100.0
2d1s_A	548	Luciferase, luciferin 4-monooxygenase; alpha/beta,	100.0
1pg4_A	652	Acetyl-COA synthetase; AMP-forming, adenylate-form	100.0
4fuq_A	503	Malonyl COA synthetase; ANL superfamily, methylma	100.0
1t5h_X	504	4-chlorobenzoyl COA ligase; adenylate-forming coen	100.0
3rix_A	550	Luciferase, luciferin 4-monooxygenase; oxidoreduct	100.0
3g7s_A	549	Long-chain-fatty-acid--COA ligase (FADD-1); protei	100.0
3e7w_A	511	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3fce_A	512	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
3r44_A	517	Fatty acyl COA synthetase FADD13 (fatty-acyl-COA s	100.0
3o83_A	544	Peptide arylation enzyme; ligase, adenylation of 2	100.0
3c5e_A	570	Acyl-coenzyme A synthetase ACSM2A, mitochondrial;	100.0
3rg2_A	617	Enterobactin synthase component E (ENTE), 2,3-DIH	100.0
1ry2_A	663	Acetyl-coenzyme A synthetase 1, acyl-activating en	100.0
1v25_A	541	Long-chain-fatty-acid-COA synthetase; ligase, stru	100.0
3l8c_A	521	D-alanine--poly(phosphoribitol) ligase subunit 1;	100.0
4gr5_A	570	Non-ribosomal peptide synthetase; MBTH-like domain	100.0
2v7b_A	529	Benzoate-coenzyme A ligase; benzoate oxidation, be	100.0
3nyq_A	505	Malonyl-COA ligase; A/B topology ababa sandwich be	100.0
1amu_A	563	GRSA, gramicidin synthetase 1; peptide synthetase,	100.0
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	100.0
3ipl_A	501	2-succinylbenzoate--COA ligase; structural genomic	100.0
3ivr_A	509	Putative long-chain-fatty-acid COA ligase; structu	100.0
2vsq_A	1304	Surfactin synthetase subunit 3; ligase, peptidyl c	100.0
3ite_A	562	SIDN siderophore synthetase; ligase, non-ribosomal	100.0
4dg8_A	620	PA1221; ANL superfamily, adenylation domain, pepti	100.0
3gqw_A	576	Fatty acid AMP ligase; FAAL, E. coli, ATP-dependen	100.0
3kxw_A	590	Saframycin MX1 synthetase B; fatty acid AMP ligase	100.0
3qov_A	436	Phenylacetate-coenzyme A ligase; acetyl-COA synthe	99.98
2y27_A	437	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.97
2y4o_A	443	Phenylacetate-coenzyme A ligase; phenylacetic acid	99.97
4gs5_A	358	Acyl-COA synthetase (AMP-forming)/AMP-acid ligase	99.96
3t5a_A	480	Long-chain-fatty-acid--AMP ligase FADD28; acetyl-C	99.85
3hgu_A	369	EHPF; phenazine, antibiotic, biosynthetic protein;	99.51
3lax_A	109	Phenylacetate-coenzyme A ligase; structural genomi	99.37
3gxs_A	109	Phenylacetate-coenzyme A ligase; APC62324.1, struc	99.29
4b2g_A	609	GH3-1 auxin conjugating enzyme; signaling protein,	98.28
4eql_A	581	4-substituted benzoates-glutamate ligase GH3.12; f	98.23
4epl_A	581	Jasmonic acid-amido synthetase JAR1; ANL adenylati	98.11

>3ni2_A 4-coumarate:COA ligase; 4CL, phenylpropanoid biosynthesis; HET: AYL EPE; 1.90A {Populus tomentosa} PDB: 3a9v_A* 3a9u_A*

Probab=100.00  E-value=7.2e-39  Score=270.55  Aligned_cols=196  Identities=29%  Similarity=0.468  Sum_probs=180.7

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh-CCc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF-GIK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~-g~~----------   70 (204)
                      +++.++++++|++.++|+++..+++......       .++++||.+++||+++++++.+++.+.| +..          
T Consensus       263 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~l~~~YG~TE~  335 (536)
T 3ni2_A          263 LLGLIEKYKVSIAPVVPPVMMSIAKSPDLDK-------HDLSSLRMIKSGGAPLGKELEDTVRAKFPQARLGQGYGMTEA  335 (536)
T ss_dssp             HHHHHHHHTCCEEEECHHHHHHHHTCSCGGG-------SCCTTCCEEEEESSCCCHHHHHHHHHHCTTSEEEEEEECGGG
T ss_pred             HHHHHHHhCCeEEEccHHHHHHHHhCccccc-------CCCccceEEEECCCCCCHHHHHHHHHHCCCCCcccccccccc
Confidence            6789999999999999999999998766555       6789999999999999999999999887 333          


Q ss_pred             ---------------------------ceEEEEECC-CCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceec
Q psy13807         71 ---------------------------HLIVKVVDK-KGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPS  119 (204)
Q Consensus        71 ---------------------------~~~v~i~d~-~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~T  119 (204)
                                                 ++.++++|+ +|+++|.|+.|||+++|++++.|||++++.+..   .++||+|
T Consensus       336 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~~g~~~T  415 (536)
T 3ni2_A          336 GPVLAMCLAFAKEPFDIKPGACGTVVRNAEMKIVDPETGASLPRNQPGEICIRGDQIMKGYLNDPEATSRTIDKEGWLHT  415 (536)
T ss_dssp             SSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEE
T ss_pred             chhhhcccccCCccccCCCCCeeEeCCCcEEEEEeCCCCcCCCCCCccEEEEeCcccchhhcCChhHHHhhccCCCceEc
Confidence                                       568899995 599999999999999999999999999988765   6899999


Q ss_pred             cceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHH
Q psy13807        120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKT  199 (204)
Q Consensus       120 GD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~  199 (204)
                      ||++++|+||+++++||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|+..++...+.++|++
T Consensus       416 GDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~  495 (536)
T 3ni2_A          416 GDIGYIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIAHPEISDAAVVGLKDEDAGEVPVAFVVKSEKSQATEDEIKQ  495 (536)
T ss_dssp             EEEEEECTTSCEEEEEECSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHH
T ss_pred             ccEEEEcCCceEEEEecccceEEECCEEECHHHHHHHHHhCCCcceEEEEeeecCCCCceeEEEEEecCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999988899999999999888889999999


Q ss_pred             HHhcC
Q psy13807        200 YCKGK  204 (204)
Q Consensus       200 ~l~~~  204 (204)
                      +|+++
T Consensus       496 ~l~~~  500 (536)
T 3ni2_A          496 YISKQ  500 (536)
T ss_dssp             HHHTT
T ss_pred             HHHHh
Confidence            99864

>1mdb_A 2,3-dihydroxybenzoate-AMP ligase; adenylation domain, peptide synthetase, antibiotic biosynthesis, siderophore formation; HET: AMP DBH; 2.15A {Bacillus subtilis} SCOP: e.23.1.1 PDB: 1md9_A* 1mdf_A

Probab=100.00  E-value=1.3e-38  Score=269.13  Aligned_cols=195  Identities=28%  Similarity=0.405  Sum_probs=177.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.|+++++|+++++|+++..+++......       .++++||.+++||+++++++.+++.+.+|..           
T Consensus       264 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~  336 (539)
T 1mdb_A          264 AFPLIEREKVTITALVPPLAMVWMDAASSRR-------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGL  336 (539)
T ss_dssp             HHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSC
T ss_pred             HHHHHHHcCCeEEEccHHHHHHHHhCccccC-------CCccceeEEEEcCCCCCHHHHHHHHHHhCCcEEEEEcCCCCc
Confidence            6789999999999999999999988765444       5789999999999999999999999887754           


Q ss_pred             -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEE
Q psy13807         71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFI  124 (204)
Q Consensus        71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~  124 (204)
                                             ...++++|++|+++|.|+.|||+++||+++.|||++++.+..   .++||+|||+++
T Consensus       337 ~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~  416 (539)
T 1mdb_A          337 VNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR  416 (539)
T ss_dssp             EEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEE
T ss_pred             ccccCCCCcHHhcCCCCCcccCCCceEEEECCCCCCCcCCCcceEEeeCcccchhhcCChhhhhhhccCCCCeecCceEE
Confidence                                   237899999999999999999999999999999999987765   589999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK  204 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  204 (204)
                      +|+||+++|.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++|+|++.+ ...+.++++++|+++
T Consensus       417 ~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~l~~~  495 (539)
T 1mdb_A          417 LTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRD-EAPKAAELKAFLRER  495 (539)
T ss_dssp             ECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS-SCCCHHHHHHHHHHT
T ss_pred             ECCCCcEEEeccccceEEECCEEECHHHHHHHHHhCCCcceEEEEeccccccCceEEEEEEECC-CCCCHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999888889999999873 467888999988763

>3etc_A AMP-binding protein; adenylate-forming acyl-COA synthetase ligase, ligase; HET: PGE 1PE EPE; 2.10A {Methanosarcina acetivorans}

Probab=100.00  E-value=2.5e-38  Score=269.50  Aligned_cols=194  Identities=29%  Similarity=0.473  Sum_probs=175.0

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.|+++++|.++++|++++.|++.. ...       .++++||.+++||+++++++.++|.+.+|..           
T Consensus       308 ~~~~i~~~~vt~~~~~P~~~~~l~~~~-~~~-------~~l~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~  379 (580)
T 3etc_A          308 MLEKASKYGVTTFCAPPTIYRFLIKED-LSH-------YNFSTLKYAVVAGEPLNPEVFNRFLEFTGIKLMEGFGQTETV  379 (580)
T ss_dssp             HHHHHHHHTCCEEEECHHHHHHHHTSC-C----------CCTTCCEEEECSSCCCHHHHHHHHHHHSCCCEEEECCTTSS
T ss_pred             HHHHHHHHCCeEEEccHHHHHHHHhcc-ccc-------CCCccceEEEEccCCCCHHHHHHHHHHhCCeEeccccccccc
Confidence            688999999999999999999998752 222       5789999999999999999999999987765           


Q ss_pred             ---------------------ceEEEEECCCCCcCCCCCeeEEEEEe-----CcccccccCCcccccC--CCCceeccce
Q psy13807         71 ---------------------HLIVKVVDKKGNIVPMGMCGEVCYRG-----YNVMLGYYGEENKILE--NDEWFPSGDF  122 (204)
Q Consensus        71 ---------------------~~~v~i~d~~g~~~~~~~~Gel~v~~-----~~~~~~y~~~~~~~~~--~~~~~~TGD~  122 (204)
                                           ++.++++|++|+++|.|+.|||++++     ++++.|||++++.+..  .+|||+|||+
T Consensus       380 ~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~g~~~~~g~~GEl~v~~~~g~~~~~~~gY~~~p~~t~~~f~~gwy~TGDl  459 (580)
T 3etc_A          380 VTIATFPWMEPKPGSIGKPTPGYKIELMDRDGRLCEVGEEGEIVINTMEGKPVGLFVHYGKDPERTEETWHDGYYHTGDM  459 (580)
T ss_dssp             CCEECCTTSCCCTTCCBEECTTCEEEEECTTSCBCCTTCCEEEEEECTTCCCTTCCCEETTCHHHHHHHEETTEEEEEEE
T ss_pred             ceeecCCCCCCCCCccccCCCCCEEEEECCCCCCCCCCCceEEEEecCCCCCCeeeccccCCHhHHHhhcCCCEEecCcE
Confidence                                 68899999999999999999999997     7899999999998876  7899999999


Q ss_pred             EEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH---HHHHH
Q psy13807        123 FILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ---DDIKT  199 (204)
Q Consensus       123 ~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~---~~l~~  199 (204)
                      +++|+||+++|.||+||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.+.|+|++.++...+.   ++|++
T Consensus       460 g~~d~dG~l~~~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~~~~~g~~~~a~vv~~~~~~~~~~~~~~l~~  539 (580)
T 3etc_A          460 AWMDEDGYLWFVGRADDIIKTSGYKVGPFEVESALIQHPAVLECAITGVPDPVRGQVIKATIVLTKDYTPSDSLKNELQD  539 (580)
T ss_dssp             EEECTTSCEEEEEESSSCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHH
T ss_pred             EEECCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeeEEEEeeeccCCCcEEEEEEEECCCCCCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999988755543   57777


Q ss_pred             HHhc
Q psy13807        200 YCKG  203 (204)
Q Consensus       200 ~l~~  203 (204)
                      +|++
T Consensus       540 ~l~~  543 (580)
T 3etc_A          540 HVKN  543 (580)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7764

>2d1s_A Luciferase, luciferin 4-monooxygenase; alpha/beta, beta barrel, alpha+beta, riken structural genomics/proteomics initiative, RSGI; HET: SLU; 1.30A {Luciola cruciata} PDB: 2d1q_A* 2d1r_A* 2d1t_A*

Probab=100.00  E-value=2.6e-38  Score=267.82  Aligned_cols=196  Identities=29%  Similarity=0.423  Sum_probs=179.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC-Cc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG-IK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g-~~----------   70 (204)
                      +++.|+++++|+++++|++++.|.+......       .+++++|.+++||+++++++.+++.+.|+ ..          
T Consensus       275 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~  347 (548)
T 2d1s_A          275 FLKTLQDYKCTSVILVPTLFAILNKSELLNK-------YDLSNLVEIASGGAPLSKEVGEAVARRFNLPGVRQGYGLTET  347 (548)
T ss_dssp             HHHHHHHTTEEEEEECHHHHHHHHHCSCGGG-------SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGG
T ss_pred             HHHHHHHcCCcEEEecHHHHHHHHhCccccc-------ccccceeEEEEcCccCCHHHHHHHHHHcCCCceeeccccccc
Confidence            6789999999999999999999988755433       57899999999999999999999999884 32          


Q ss_pred             ----------------------ceEEEEEC-CCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEE
Q psy13807         71 ----------------------HLIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFI  124 (204)
Q Consensus        71 ----------------------~~~v~i~d-~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~  124 (204)
                                            ++.++++| ++|++++.|+.|||+++|++++.|||++++.+..   .++||+|||+++
T Consensus       348 ~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~  427 (548)
T 2d1s_A          348 TSAIIITPEGDDKPGASGKVVPLFKAKVIDLDTKKSLGPNRRGEVCVKGPMLMKGYVNNPEATKELIDEEGWLHTGDIGY  427 (548)
T ss_dssp             SSEEEECCTTCCCTTCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEE
T ss_pred             cceeeecCcccCCCCCCCccCCCceEEEEeCCcCccCCCCCCeEEEECCHHHhhhhcCChHHhhhcccCCcEEEccCEEE
Confidence                                  56789999 6799999999999999999999999999987765   589999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK  204 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  204 (204)
                      +|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++|+|++.++...+.++|+++|+++
T Consensus       428 ~~~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~V~~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~  507 (548)
T 2d1s_A          428 YDEEKHFFIVDRLKSLIKYKGYQVPPAELESVLLQHPSIFDAGVAGVPDPVAGELPGAVVVLESGKNMTEKEVMDYVASQ  507 (548)
T ss_dssp             ECTTCCEEEEEEGGGCBCBTTCCBCHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHTT
T ss_pred             EcCCCeEEEeccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeeeEEEEEEcCCCCCCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998888899999999887778899999998764

>1pg4_A Acetyl-COA synthetase; AMP-forming, adenylate-forming, thioester-forming, ligase; HET: COA PRX; 1.75A {Salmonella enterica} SCOP: e.23.1.1 PDB: 1pg3_A* 2p2f_A* 2p2b_A* 2p2q_A* 2p2j_A* 2p20_A* 2p2m_A*

Probab=100.00  E-value=3.1e-38  Score=272.21  Aligned_cols=195  Identities=22%  Similarity=0.359  Sum_probs=175.6

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCC--CCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC---Cc------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQP--LTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG---IK------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g---~~------   70 (204)
                      ++++|+++++|+++++|++++.|++....  ..       .++++||.+++||+++++++.+++.+.+|   +.      
T Consensus       342 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~~-------~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG  414 (652)
T 1pg4_A          342 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEG-------TDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWW  414 (652)
T ss_dssp             HHHHHHHHTCSEEEECHHHHHHHHTTGGGGTTT-------CCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBC
T ss_pred             HHHHHHHhCCeEEEeCHHHHHHHHhcCcccccc-------CCcCceEEEEEecCCCCHHHHHHHHHHhCCCCCcEEcccc
Confidence            68999999999999999999999886542  22       57899999999999999999999999887   33      


Q ss_pred             ----------------------------ceEEEEECCCCCcCCCCCeeEEEEEe--CcccccccCCcccccC-----CCC
Q psy13807         71 ----------------------------HLIVKVVDKKGNIVPMGMCGEVCYRG--YNVMLGYYGEENKILE-----NDE  115 (204)
Q Consensus        71 ----------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~--~~~~~~y~~~~~~~~~-----~~~  115 (204)
                                                  ++.++|+|++|++++.|+.|||++++  |+++.|||++++.+..     .+|
T Consensus       415 ~TE~~~~~~~~~~~~~~~~~~s~G~p~~g~~v~i~d~~g~~v~~g~~GEl~i~g~~p~~~~gY~~~~e~~~~~~~~~~~g  494 (652)
T 1pg4_A          415 QTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKN  494 (652)
T ss_dssp             CGGGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTT
T ss_pred             CcccccceecCCCCCcCccCCccccCcCCCeEEEECCCCCCcCCCceEEEEEccCCCchhhhhcCCHHHHHhhhhhcCCC
Confidence                                        67899999999999999999999999  7899999999987654     478


Q ss_pred             ceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC--
Q psy13807        116 WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT--  193 (204)
Q Consensus       116 ~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~--  193 (204)
                      ||+|||++++|+||+++|+||+||+||++|++|+|.|||++|.+||+|.+++|++.+++..++.++|+|++.++...+  
T Consensus       495 ~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~l~a~Vv~~~~~~~~~~  574 (652)
T 1pg4_A          495 MYFSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPE  574 (652)
T ss_dssp             SEEEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHH
T ss_pred             EEECCcEEEEcCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEEcCCCCeEEEEEEEECCCCCCCHH
Confidence            999999999999999999999999999999999999999999999999999999999988889999999998876554  


Q ss_pred             -HHHHHHHHhc
Q psy13807        194 -QDDIKTYCKG  203 (204)
Q Consensus       194 -~~~l~~~l~~  203 (204)
                       .++|+++|++
T Consensus       575 ~~~~l~~~l~~  585 (652)
T 1pg4_A          575 LYAEVRNWVRK  585 (652)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence             4677777764

>4fuq_A Malonyl COA synthetase; ANL superfamily, methylma malonate, ligase; HET: MSE; 1.70A {Rhodopseudomonas palustris} PDB: 4fut_A* 4gxr_A* 4gxq_A*

Probab=100.00  E-value=8.5e-38  Score=262.19  Aligned_cols=194  Identities=31%  Similarity=0.502  Sum_probs=178.5

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++  ++|+++++|+++..+++......       ..++++|.+++||+++++++.+++.+.+|..           
T Consensus       236 ~~~~i~--~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~  306 (503)
T 4fuq_A          236 ILDLMA--RATVLMGVPTFYTRLLQSPRLTK-------ETTGHMRLFISGSAPLLADTHREWSAKTGHAVLERYGMTETN  306 (503)
T ss_dssp             HHHHHT--TCCEEEECHHHHHHHHTCTTCST-------TTTTTCCEEEECSSCCCHHHHHHHHHHHSCCEEECCEETTTE
T ss_pred             HHHHHh--hcCEEEEHHHHHHHHHhCCCccc-------cchhhcEEEEECCCCCCHHHHHHHHHHhCCCccceEcccccC
Confidence            456676  89999999999999998776555       6788999999999999999999999987754           


Q ss_pred             ---------------------ceEEEEEC-CCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEEE
Q psy13807         71 ---------------------HLIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFIL  125 (204)
Q Consensus        71 ---------------------~~~v~i~d-~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~~  125 (204)
                                           ++.++++| ++|+++|.|+.|||+++|++++.|||++++.+..   .++||+|||++++
T Consensus       307 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDl~~~  386 (503)
T 4fuq_A          307 MNTSNPYDGDRVPGAVGPALPGVSARVTDPETGKELPRGDIGMIEVKGPNVFKGYWRMPEKTKSEFRDDGFFITGDLGKI  386 (503)
T ss_dssp             ECBCCCSSSCCCTTEEEEBCTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHTBCTTSCEEEEEEEEE
T ss_pred             cccccCCCCCCcCCccccCCCCeEEEEEECCCCCCCcCCCceEEEEECCchhhhhcCChhhhHhhhCCCCCeEcceeEEE
Confidence                                 67899999 6699999999999999999999999999998865   5899999999999


Q ss_pred             ecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807        126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK  204 (204)
Q Consensus       126 ~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  204 (204)
                      ++||+++|+||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++++|++.++...+.++++++|+++
T Consensus       387 ~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  465 (503)
T 4fuq_A          387 DERGYVHILGRGKDLVITGGFNVYPKEIESEIDAMPGVVESAVIGVPHADFGEGVTAVVVRDKGATIDEAQVLHGLDGQ  465 (503)
T ss_dssp             CTTCEEEECCSSTTCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHBTT
T ss_pred             cCCCcEEEEecCCCEEEECCEEECHHHHHHHHHhCCCeeEEEEEEeEchhcCceeEEEEEeCCCCCCCHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999998888999999999988888999999988764

>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase domain alternation confo change; 2.00A {Alcaligenes SP} SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X* 2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*

Probab=100.00  E-value=8.3e-38  Score=262.22  Aligned_cols=195  Identities=30%  Similarity=0.499  Sum_probs=178.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCC--CCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc---------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQP--LTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK---------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~--~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~---------   70 (204)
                      +++.|+++++|+++++|++++.|++....  ..       ..+++||.+++||+++++++.+++.+.++..         
T Consensus       236 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~-------~~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE  308 (504)
T 1t5h_X          236 ALQLVQQEQVTSLFATPTHLDALAAAAAHAGSS-------LKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTE  308 (504)
T ss_dssp             HHHHHHHHTCCEEECCHHHHHHHHHHHCCTTCC-------CCCTTCCEEEECCTTCCHHHHHHHHHHCCSEEEEEEEETT
T ss_pred             HHHHHHHhCCeEEEeChHHHHHHHhhhcccccc-------ccCccccEEEEcCCcCCHHHHHHHHHhcCcceeeeecccc
Confidence            67899999999999999999999887532  22       4689999999999999999999999987754         


Q ss_pred             --------------------ceEEEEECCCC---CcCCCCCeeEEEEE-eCcccccccCCcccccC--CCCceeccceEE
Q psy13807         71 --------------------HLIVKVVDKKG---NIVPMGMCGEVCYR-GYNVMLGYYGEENKILE--NDEWFPSGDFFI  124 (204)
Q Consensus        71 --------------------~~~v~i~d~~g---~~~~~~~~Gel~v~-~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~  124 (204)
                                          ++.++++|+++   ++++.|+.|||+++ +++++.||+++++.+..  .+|||+|||+++
T Consensus       309 ~~~~~~~~~~~~~~~g~p~~~~~~~i~~~~~~~~~~~~~g~~GEl~v~gg~~~~~GY~~~~~~t~~~f~~g~~~TGDlg~  388 (504)
T 1t5h_X          309 AMNSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAV  388 (504)
T ss_dssp             TEEEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEE
T ss_pred             ccccccccCCCCCccccCCCCCceeEEeccCCCCCcCCCCCcceEEEeCCceeeceecCCchhhhhhhcCCccccCcEEE
Confidence                                46778888887   89999999999999 89999999999988776  689999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      +++||+++|.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++|+|++.++...+.++++++|++
T Consensus       389 ~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~  467 (504)
T 1t5h_X          389 WTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCRS  467 (504)
T ss_dssp             ECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEECSSSSEEEEEEEEECTTCCCCHHHHHHHHHT
T ss_pred             ECCCceEEEeCcccCEEEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCcEEEEEEEecCCcCcCHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999888899999999988877889999999875

>3rix_A Luciferase, luciferin 4-monooxygenase; oxidoreductase, photoprotein, luminescence, aspulvinone, natural product extracts; HET: 923; 1.70A {Photinus pyralis} SCOP: e.23.1.1 PDB: 1ba3_A 1lci_A* 4e5d_A* 3ies_A* 3iep_A* 3ier_A* 4g36_A* 4g37_A* 3qya_A

Probab=100.00  E-value=8.1e-39  Score=270.97  Aligned_cols=196  Identities=28%  Similarity=0.438  Sum_probs=115.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.|+++++|.++++|+++..|++......       .++++||.+++||+++++++.+++.+.++..           
T Consensus       273 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~v~~~YG~TE~  345 (550)
T 3rix_A          273 FLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-------YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTET  345 (550)
T ss_dssp             HHHHHHHTTCSEEEECHHHHHHHHHCCGGGG-------SCCTTCCEEEECSSCCCHHHHHHHHHHTTCSCCEEEEECGGG
T ss_pred             HHHHHHHcCCeEEEeCcHHHHHHHhCccccc-------cCcccccEEEEecCCCCHHHHHHHHHHcCCCccccccCcCcc
Confidence            6789999999999999999999998765544       6789999999999999999999999998753           


Q ss_pred             ----------------------ceEEEEECC-CCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEE
Q psy13807         71 ----------------------HLIVKVVDK-KGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFI  124 (204)
Q Consensus        71 ----------------------~~~v~i~d~-~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~  124 (204)
                                            ++.++++|+ +|++++.|+.|||+++|++++.|||++++.+..   .+|||+|||+++
T Consensus       346 ~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~~~~~g~~~TGDl~~  425 (550)
T 3rix_A          346 TSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAY  425 (550)
T ss_dssp             SSEEEECCTTCCCTTEEEEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEEEEEEE
T ss_pred             ccceecCCCCCCCCCCcccccCCcEEEEEeCCCCcCCCCCCCeEEEEeCCCcchhhcCChhhhhhhcCCCCCeecCcEEE
Confidence                                  678899995 599999999999999999999999999988765   689999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK  204 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  204 (204)
                      +|+||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...+.++++++|+++
T Consensus       426 ~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~~~~~~  505 (550)
T 3rix_A          426 WDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVASQ  505 (550)
T ss_dssp             ECTTCCEEEC----------------------------------------------------------------------
T ss_pred             EeCCceEEEEecchheeEECCEEECHHHHHHHHHhCCCcceEEEEEeecCCCCceEEEEEEecCCCCCCHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999998889999999999888777788888877653

>3g7s_A Long-chain-fatty-acid--COA ligase (FADD-1); protein structure initiative, PSI-II, NYSGXRC, 11193J, structural genomics; 2.15A {Archaeoglobus fulgidus dsm 4304}

Probab=100.00  E-value=3.4e-37  Score=260.98  Aligned_cols=198  Identities=28%  Similarity=0.472  Sum_probs=160.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHH----hCC--------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDT----FGI--------   69 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~----~g~--------   69 (204)
                      +++.|+++++|+++++|++++.|++.......     ..+++++|.+++||+++++++.+++.+.    ++.        
T Consensus       260 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----~~~~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  334 (549)
T 3g7s_A          260 LAENIEKYKGTFSWAVPPALNVLVNTLESSNK-----TYDWSYLKVFATGAWPVAPALVEKLLKLAAEKCNNPRLRHNQI  334 (549)
T ss_dssp             HHHHHHHTTCCEEEECHHHHHHHHHHHHHSCC-----CCCCTTCCEEEEESSCCCHHHHHHHHHHHHHHSSCTTCEEEEE
T ss_pred             HHHHHHHhCCeEEEeCCHHHHHHHhhhhhhcc-----cCCccceeEEEeCCccCCHHHHHHHHHHHHhhcCCccccccce
Confidence            67899999999999999999999886533220     1468899999999999999999999887    452        


Q ss_pred             ---c-------------------------ceEEEEEC-CCCCcCCCCCeeEEEEEeCcccccccCCcccccC-----CCC
Q psy13807         70 ---K-------------------------HLIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE-----NDE  115 (204)
Q Consensus        70 ---~-------------------------~~~v~i~d-~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~-----~~~  115 (204)
                         +                         ++.++++| ++|++++.|+.|||+++|++++.|||++++.+..     .+|
T Consensus       335 YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~g  414 (549)
T 3g7s_A          335 WGMTEACPMVTTNPPLRLDKSTTQGVPMSDIELKVISLEDGRELGVGESGEIVIRGPNIFKGYWKREKENQECWWYDEKG  414 (549)
T ss_dssp             EECGGGSSEEEECCGGGGGGTTSCCEECTTCEEEEECSSSCCEECTTCCEEEEEESTTSCSEETTCTTGGGTSEEECTTC
T ss_pred             EeccccchhhhcCCccccCcCCCccccCCCCEEEEEeCCCCcCCCCCCceEEEEECcchhhhhCCChhhhhhhhhccCCC
Confidence               1                         67899999 7799999999999999999999999999998875     455


Q ss_pred             --ceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCC--CC
Q psy13807        116 --WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG--AS  191 (204)
Q Consensus       116 --~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~--~~  191 (204)
                        ||+|||++++|+||+++|.||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++|+|++.++  ..
T Consensus       415 ~~~~~TGDl~~~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~  494 (549)
T 3g7s_A          415 RKFFRTGDVGFIDEEGFLHFQDRVKEVIKYKGYTIAPFELEALLMKHEAVMDVAVIGKPDEEAGEVPKAFIVLKPEYRGK  494 (549)
T ss_dssp             CEEEEEEEEEEECTTSCEEEEEEC------------CHHHHHHHTTSTTEEEEEEECCCC------CEEEEEECSTTTTS
T ss_pred             CceEccCcEEEEcCCceEEEeccccceEEECCEEECHHHHHHHHHhCCCeeeEEEEeeEccccCceEEEEEEECCCccCc
Confidence              99999999999999999999999999999999999999999999999999999999998888999999999876  56


Q ss_pred             CCHHHHHHHHhcC
Q psy13807        192 LTQDDIKTYCKGK  204 (204)
Q Consensus       192 ~~~~~l~~~l~~~  204 (204)
                      .+.++|+++|+++
T Consensus       495 ~~~~~l~~~l~~~  507 (549)
T 3g7s_A          495 VDEEDIIEWVRER  507 (549)
T ss_dssp             CCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHh
Confidence            7889999999864

>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A*

Probab=100.00  E-value=1.9e-36  Score=254.37  Aligned_cols=194  Identities=20%  Similarity=0.211  Sum_probs=172.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh-CCc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF-GIK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~-g~~----------   70 (204)
                      +++.++++++|.+.++|++++.++.......       ..++++|.+++||+++++++.+++.+.| +..          
T Consensus       226 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~  298 (511)
T 3e7w_A          226 LFEELKKSGLNVWTSTPSFVQMCLMDPGFSQ-------DLLPHADTFMFCGEVLPVSVAKALLERFPKAKIFNTYGPTEA  298 (511)
T ss_dssp             HHHHHHHHCCSEEEECHHHHHHHHTSTTCST-------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEECCCCGGG
T ss_pred             HHHHHHHcCCcEEEecHHHHHHHHhcccccc-------ccCCcccEEEEecCCCCHHHHHHHHHHCCCcEEEeCcccchh
Confidence            6789999999999999999999988766555       6789999999999999999999999987 333          


Q ss_pred             ---------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC----CCC--ce
Q psy13807         71 ---------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE----NDE--WF  117 (204)
Q Consensus        71 ---------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~----~~~--~~  117 (204)
                                                 ++.++++|++|+++|.|+.|||+++||+++.|||++++.+..    .++  ||
T Consensus       299 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~g~~~~  378 (511)
T 3e7w_A          299 TVAVTSVEITNDVISRSESLPVGFAKPDMNIFIMDEEGQPLPEGEKGEIVIAGPSVSRGYLGEPELTEKAFFSHEGQWAY  378 (511)
T ss_dssp             SSCSEEEEECHHHHTTCSSCCCBEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCCBTTCHHHHHHHEEESSSSEEE
T ss_pred             eeeeeEEeccccccccCCcCCCcceeCCCEEEEECCCCCCCCCCCceEEEEecCccChhhCCCcccchhhhcCCCCCEEE
Confidence                                       567899999999999999999999999999999999987765    233  79


Q ss_pred             eccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH---
Q psy13807        118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ---  194 (204)
Q Consensus       118 ~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~---  194 (204)
                      +|||++++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...+.   
T Consensus       379 ~TGDlg~~-~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~  457 (511)
T 3e7w_A          379 RTGDAGFI-QDGQIFCQGRLDFQIKLHGYRMELEEIEFHVRQSQYVRSAVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQL  457 (511)
T ss_dssp             EEEEEEEE-ETTEEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEECSSSSCCEEEEEEEECCCCCSSHHHH
T ss_pred             eCCCeEEc-cCCeEEEEccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEEcCCCCceEEEEEEEeccccccchhhH
Confidence            99999999 59999999999999999999999999999999999999999999998888889999999987655543   


Q ss_pred             -HHHHHHHhc
Q psy13807        195 -DDIKTYCKG  203 (204)
Q Consensus       195 -~~l~~~l~~  203 (204)
                       ++++++|++
T Consensus       458 ~~~l~~~l~~  467 (511)
T 3e7w_A          458 TSAIKKELAA  467 (511)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence             556666654

>3fce_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, AMP-forming domain, adenylation, D-alanine protein ligase, ATP complex; HET: ATP; 1.90A {Bacillus cereus} PDB: 3fcc_A* 3dhv_A*

Probab=100.00  E-value=1.6e-36  Score=254.83  Aligned_cols=195  Identities=19%  Similarity=0.186  Sum_probs=173.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh-CCc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF-GIK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~-g~~----------   70 (204)
                      +++.++++++|.+.++|++++.++.......       ..++++|.+++||+++++++.+++.+.| +..          
T Consensus       227 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~TE~  299 (512)
T 3fce_A          227 LFASLEQSDIQVWTSTPSFAEMCLMEASFSE-------SMLPNMKTFLFCGEVLPNEVARKLIERFPKATIMNTYGPTEA  299 (512)
T ss_dssp             HHHHHHHHCCCEEEECHHHHHHHTTSTTCST-------TTSTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGG
T ss_pred             HHHHHHHcCCcEEEecHHHHHHHHhhccccc-------hhCccccEEEEecCcCCHHHHHHHHHHCCCCEEEeCcccChh
Confidence            6788999999999999999999988766555       6789999999999999999999999987 332          


Q ss_pred             ---------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC------CCCce
Q psy13807         71 ---------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE------NDEWF  117 (204)
Q Consensus        71 ---------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~------~~~~~  117 (204)
                                                 ++.++++|++|++++.|+.|||+++||+++.|||++++.+..      .++||
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~  379 (512)
T 3fce_A          300 TVAVTGIHVTEEVLDQYKSLPVGYCKSDCRLLIMKEDGTIAPDGEKGEIVIVGPSVSVGYLGSPELTEKAFTMIDGERAY  379 (512)
T ss_dssp             SSCSEEEECCHHHHHHCSSCCCEEECTTCEEEEECSSSCBCCTTSCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred             hhheeeEEeccccccccCCCccccccCCcEEEEECCCCCCCCCCCeEEEEEeccccChhhcCCchhhhhccccCCCCEEE
Confidence                                       567899999999999999999999999999999999987765      36799


Q ss_pred             eccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCH---
Q psy13807        118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQ---  194 (204)
Q Consensus       118 ~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~---  194 (204)
                      +|||++++ +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++|+|++.++...+.   
T Consensus       380 ~TGDlg~~-~dG~l~i~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~~~~~~~~~~  458 (512)
T 3fce_A          380 KTGDAGYV-ENGLLFYNGRLDFQIKLHGYRMELEEIEHHLRACSYVEGAVIVPIKKGEKYDYLLAVVVPGEHSFEKEFKL  458 (512)
T ss_dssp             EEEEEEEE-ETTEEEEEEEGGGCEEETTEEECHHHHHHHHHHSTTEEEEEEEEEEETTEEEEEEEEEEECSCCCSSHHHH
T ss_pred             eCCceEEe-cCCEEEEecccCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEEecCCCceEEEEEEecCCccccchhhh
Confidence            99999999 79999999999999999999999999999999999999999999998888889999999987644443   


Q ss_pred             -HHHHHHHhcC
Q psy13807        195 -DDIKTYCKGK  204 (204)
Q Consensus       195 -~~l~~~l~~~  204 (204)
                       ++++++|+++
T Consensus       459 ~~~l~~~l~~~  469 (512)
T 3fce_A          459 TSAIKKELNER  469 (512)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhh
Confidence             4677776653

>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase); ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis} PDB: 3t5c_A 3t5b_A

Probab=100.00  E-value=3.5e-37  Score=259.20  Aligned_cols=192  Identities=28%  Similarity=0.445  Sum_probs=173.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|++++.|.+......       .+++++|.+++||+++++++.+++.+. +..           
T Consensus       250 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~i~~gGe~l~~~~~~~~~~~-~~~~~~~YG~TE~~  321 (517)
T 3r44_A          250 VWSLIVEERVCIGGAVPAILNFMRQVPEFAE-------LDAPDFRYFITGGAPMPEALIKIYAAK-NIEVVQGYALTESC  321 (517)
T ss_dssp             HHHHHHHTTCCEEEECHHHHHHHHHSHHHHH-------CCCTTCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGT
T ss_pred             HHHHHHHhCCeEEEeHHHHHHHHHhCccccc-------CCCCcccEEEECCCCCCHHHHHHHHhc-CCcEEEeecccccc
Confidence            6789999999999999999999988754433       578899999999999999999999876 332           


Q ss_pred             -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEEE
Q psy13807         71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFIL  125 (204)
Q Consensus        71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~  125 (204)
                                             ++.++++|++|.+++.| .|||+++|++++.|||++++.+..  .++||+|||++++
T Consensus       322 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g-~GEl~v~g~~v~~GY~~~p~~t~~~f~~g~~~TGDl~~~  400 (517)
T 3r44_A          322 GGGTLLLSEDALRKAGSAGRATMFTDVAVRGDDGVIREHG-EGEVVIKSDILLKEYWNRPEATRDAFDNGWFRTGDIGEI  400 (517)
T ss_dssp             TCEEEECGGGTTTTTTCCBEECTTEEEEEECTTSCEESSE-EEEEEEEETTSCSEETTCHHHHHHTEETTEEEEEEEEEE
T ss_pred             cceeecCCccccccCCCCCcCCCCeEEEEECCCCCCCCCC-CeEEEEeCcchhhhhCCChhhhHhhhcCCCEecceeEEE
Confidence                                   67889999999999998 899999999999999999998876  6899999999999


Q ss_pred             ecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        126 HENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       126 ~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      ++||+++|.||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++++| +.++...+.++|+++|++
T Consensus       401 ~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~v-~~~~~~~~~~~l~~~l~~  477 (517)
T 3r44_A          401 DDEGYLYIKDRLKDMIISGGENVYPAEIESVIIGVPGVSEVAVIGLPDEKWGEIAAAIV-VADQNEVSEQQIVEYCGT  477 (517)
T ss_dssp             CTTSCEEEEECGGGCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEE-EECTTTCCHHHHHHHHHH
T ss_pred             cCCeeEEEecCCcCEEEECCEEECHHHHHHHHHhCCCEeEEEEEeccccccCceEEEEE-ECCCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999988888888888 555667888999998875

>3o83_A Peptide arylation enzyme; ligase, adenylation of 2,3-dihydroxybenzoate and transfer to pantetheine cofactor of BASF; HET: IXN; 1.90A {Acinetobacter baumannii} SCOP: e.23.1.0 PDB: 3o82_A* 3o84_A* 3u16_A* 3u17_A*

Probab=100.00  E-value=4.6e-38  Score=266.08  Aligned_cols=194  Identities=26%  Similarity=0.386  Sum_probs=119.7

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|+++..+++......       .++++||.+++||+++++++.+++.+.+|+.           
T Consensus       273 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~  345 (544)
T 3o83_A          273 CFSIIQRHQVNMASLVPSAVIMWLEKAAQYK-------DQIQSLKLLQVGGASFPESLARQVPEVLNCKLQQVFGMAEGL  345 (544)
T ss_dssp             HHHHHHHHTCCEEEECHHHHHHHHHHHTTTH-------HHHTTCCEEEEESSCCCHHHHTHHHHHHCSEEEEEEECTTSC
T ss_pred             HHHHHHHHCCCEEEechHHHHHHHhchhhcc-------ccCCcceEEEEcCCCCCHHHHHHHHHHhCCcEEeeecccccc
Confidence            6789999999999999999999998776554       5788999999999999999999999987754           


Q ss_pred             -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEE
Q psy13807         71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFI  124 (204)
Q Consensus        71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~  124 (204)
                                             ++.++++|++|+++|.|+.|||+++||+++.|||++++.+..   .++||+|||+++
T Consensus       346 ~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~~~TGDlg~  425 (544)
T 3o83_A          346 VNYTRLDDSDEQIFTTQGRPISSDDEIKIVDEQYREVPEGEIGMLATRGPYTFCGYYQSPEHNSQVFDEDNYYYSGDLVQ  425 (544)
T ss_dssp             EEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSCCTTCHHHHHHHBCTTCCEEEEEEEE
T ss_pred             ceeecCCCchhhccCCCceecCCCcEEEEECCCCCCCCCCCeeEEEEecCCcchhhcCChhhhhhhCCCCCCeEcCCEEE
Confidence                                   558899999999999999999999999999999999988765   689999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      +++||+++|+||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++++|+..+ ...+.+++++++++
T Consensus       426 ~~~dG~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~g~~~~a~vv~~~-~~~~~~~l~~~~~~  503 (544)
T 3o83_A          426 RTPDGNLRVVGRIKDQINRGGEKIASEEIEKLILLHPEVMHAALVAIVDEQFGEKSCAFIVSRN-PELKAVVLRRHLME  503 (544)
T ss_dssp             ECTTSCEEEEEEEC-----------------------------------------------------------------
T ss_pred             EcCCCCEEEEeecCCEEEeCCEEECHHHHHHHHHhCCCccEEEEEeccCCCCCceEEEEEEeCC-CCCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999888899999999875 34566677776654

>3c5e_A Acyl-coenzyme A synthetase ACSM2A, mitochondrial; middle-chain acyl-COA synthetase, xenobiotic/medium-chain FA COA ligase; HET: ATP; 1.60A {Homo sapiens} PDB: 2vze_A 3b7w_A* 3day_A* 3eq6_A* 3eyn_A* 3gpc_A* 2wd9_A*

Probab=100.00  E-value=8.4e-37  Score=259.68  Aligned_cols=194  Identities=28%  Similarity=0.423  Sum_probs=172.4

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.|+++++|.++++|++++.|++.. ...       .+++++|.+++||+++++++.+++.+.+|..           
T Consensus       289 ~~~~i~~~~~t~~~~~P~~~~~l~~~~-~~~-------~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~  360 (570)
T 3c5e_A          289 ILKTLSSYPIKSMMGAPIVYRMLLQQD-LSS-------YKFPHLQNCVTVGESLLPETLENWRAQTGLDIRESYGQTETG  360 (570)
T ss_dssp             HHHHHHHSCCCEEEECHHHHHHHHTSC-TTT-------CCCTTCCEEEEESSCCCHHHHHHHHHHHSCCCEEEEEETTTE
T ss_pred             HHHHHHHhCCeEEeccHHHHHHHHhcc-ccc-------cccccceEEEEcCCcCCHHHHHHHHHHhCCchhhccchhhcc
Confidence            678999999999999999999998762 222       4688999999999999999999999988765           


Q ss_pred             ---------------------ceEEEEECCCCCcCCCCCeeEEEEE-----eCcccccccCCcccccC--CCCceeccce
Q psy13807         71 ---------------------HLIVKVVDKKGNIVPMGMCGEVCYR-----GYNVMLGYYGEENKILE--NDEWFPSGDF  122 (204)
Q Consensus        71 ---------------------~~~v~i~d~~g~~~~~~~~Gel~v~-----~~~~~~~y~~~~~~~~~--~~~~~~TGD~  122 (204)
                                           ++.++++|++|+++|.|+.|||+++     |++++.|||++++.+..  .++||+|||+
T Consensus       361 ~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~g~~~~~G~~GEl~v~~~~~~g~~v~~GY~~~~~~t~~~f~~~~~~TGDl  440 (570)
T 3c5e_A          361 LTCMVSKTMKIKPGYMGTAASCYDVQIIDDKGNVLPPGTEGDIGIRVKPIRPIGIFSGYVDNPDKTAANIRGDFWLLGDR  440 (570)
T ss_dssp             EEEECCTTSCCCTTCCCEECTTCCEEEECTTSCBCCTTCCEEEEEECSSBCCTTCCCEETTCHHHHHHTEETTEEEEEEE
T ss_pred             cceecCcccccCCCcccccCCCceEEEECCCCCCCCCCCCCeeEEeccCCCCchhhccccCChhHhhhhhcCCcccccee
Confidence                                 5688999999999999999999999     99999999999988765  5899999999


Q ss_pred             EEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCC-CC----HHHH
Q psy13807        123 FILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS-LT----QDDI  197 (204)
Q Consensus       123 ~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~-~~----~~~l  197 (204)
                      +++|+||+++|.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++|+|++.++.. .+    .++|
T Consensus       441 g~~d~dG~l~~~GR~dd~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~~~~~~l  520 (570)
T 3c5e_A          441 GIKDEDGYFQFMGRADDIINSSGYRIGPSEVENALMEHPAVVETAVISSPDPVRGEVVKAFVVLASQFLSHDPEQLTKEL  520 (570)
T ss_dssp             EEECTTSCEEEEEEGGGCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECGGGTTSCHHHHHHHH
T ss_pred             EEEcCCceEEEEecCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEeeeCCCCCeEEEEEEEECCcccCcchHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999888889999999876531 12    4567


Q ss_pred             HHHHhc
Q psy13807        198 KTYCKG  203 (204)
Q Consensus       198 ~~~l~~  203 (204)
                      +++|++
T Consensus       521 ~~~l~~  526 (570)
T 3c5e_A          521 QQHVKS  526 (570)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            776654

>3rg2_A Enterobactin synthase component E (ENTE), 2,3-DIH dihydroxybenzoate synthetase, isochroismatase...; adenylate-forming enzymes, ANL superfamily; HET: SVS PNS; 3.10A {Escherichia coli}

Probab=100.00  E-value=4e-36  Score=257.64  Aligned_cols=195  Identities=29%  Similarity=0.399  Sum_probs=175.8

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|++.++|+++..+++.......     ...++++|.+++||+++++++.+++.+.+|+.           
T Consensus       266 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----~~~l~~lr~i~~gGe~l~~~~~~~~~~~~~~~~~~~YG~tE~~  340 (617)
T 3rg2_A          266 CFPLIEKHQVNVTALVPPAVSLWLQALIEGES-----RAQLASLKLLQVGGARLSATLAARIPAEIGCQLQQVFGMAEGL  340 (617)
T ss_dssp             HHHHHHHTTCCEEEECHHHHHHHHHHHHTTCC-----TTTTTTCCEEEEESSCCCHHHHHHHHHHTCSEEEEEEEETTEE
T ss_pred             HHHHHHHhCCcEEEcchHHHHHHHHhhhcccc-----cccCCCccEEEEcCCcCCHHHHHHHHHHhCCcEEEEeccCcce
Confidence            56889999999999999999999876533220     03689999999999999999999999887654           


Q ss_pred             -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEE
Q psy13807         71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFI  124 (204)
Q Consensus        71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~  124 (204)
                                             +..++++|++|+++|.|+.|||+++|++++.|||++++.+..   .++||+|||+++
T Consensus       341 ~~~~~~~~~~~~~~~~~G~p~~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~~~yrTGDl~~  420 (617)
T 3rg2_A          341 VNYTRLDDSAEKIIHTQGYPMCPDDEVWVADAEGNPLPQGEVGRLMTRGPYTFRGYYKSPQHNASAFDANGFYCSGDLIS  420 (617)
T ss_dssp             EEECCTTSCHHHHHHCCCEESCTTCEEEEECTTSCBCCTTCCEEEEEECSSSCSCCTTCHHHHHHHBCTTSCEEEEEEEE
T ss_pred             eecccCCCcccccccCCCccCCCCceEEEECCCCCCCCCCCceEEEecCccccchhcCChhhhhhccCCCCceecCceEE
Confidence                                   458899999999999999999999999999999999998876   689999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      +++||.++|+||.||+||++|++|+|.|||+.|.++|+|.+++|++.+++..++.++++++..+  ..+.+++++++++
T Consensus       421 ~~~dG~l~~~GR~dd~iki~G~ri~~~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~~l~~  497 (617)
T 3rg2_A          421 IDPEGYITVQGREKDQINRGGEKIAAEEIENLLLRHPAVIYAALVSMEDELMGEKSCAYLVVKE--PLRAVQVRRFLRE  497 (617)
T ss_dssp             ECTTSCEEEEEECSSEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESS--CCCHHHHHHHHHT
T ss_pred             EcCCceEEEEeecCCEEEECCEEeCHHHHHHHHHhCCCeeEEEEEeccCcccCeeEEEEEEeCC--CCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999998888889999999875  4778889988875

>1ry2_A Acetyl-coenzyme A synthetase 1, acyl-activating enzyme 1; AMP forming, related to firefly luciferase, ligase; HET: AMP; 2.30A {Saccharomyces cerevisiae} SCOP: e.23.1.1

Probab=100.00  E-value=6.7e-37  Score=264.28  Aligned_cols=197  Identities=21%  Similarity=0.275  Sum_probs=169.8

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC---Cc--------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG---IK--------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g---~~--------   70 (204)
                      ++++|+++++|+++++|++++.|.+......     ...++++||.+++||+++++++++++.+.+|   ++        
T Consensus       348 ~~~~i~~~~vt~~~~~Ps~~~~l~~~~~~~~-----~~~~l~sLr~i~~gGe~l~~~~~~~~~~~~g~~~~~i~~~YG~T  422 (663)
T 1ry2_A          348 YWDIIDEHKVTQFYVAPTALRLLKRAGDSYI-----ENHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQT  422 (663)
T ss_dssp             HHHHHHHTTCSEEEECHHHHHHHTTSCTTSS-----SSCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCT
T ss_pred             HHHHHHHcCCCEEEecHHHHHHHHhcCcccc-----ccCCcCceEEEEEEcCCCCHHHHHHHHHHhCCCCceEEEeECCc
Confidence            7899999999999999999999987654211     0157899999999999999999999999887   32        


Q ss_pred             ---------------------------ceEEEEECC-CCCcCCC-CCeeEEEEEe--CcccccccCCcccccC-----CC
Q psy13807         71 ---------------------------HLIVKVVDK-KGNIVPM-GMCGEVCYRG--YNVMLGYYGEENKILE-----ND  114 (204)
Q Consensus        71 ---------------------------~~~v~i~d~-~g~~~~~-~~~Gel~v~~--~~~~~~y~~~~~~~~~-----~~  114 (204)
                                                 ++.++|+|+ +|++++. |+.|||++++  |+++.|||++++.+..     .+
T Consensus       423 E~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~v~~~g~~Gel~i~g~~p~~~~gy~~~~~~~~~~~~~~~~  502 (663)
T 1ry2_A          423 ESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP  502 (663)
T ss_dssp             TTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSST
T ss_pred             cccCeeeccCCCCCcccCCCccccCcCCCeEEEEcCCCCCcCCCCCcceEEEEecCCCchhcccccChHHHHHhhhcCCC
Confidence                                       567899998 8999998 9999999999  5899999999987654     37


Q ss_pred             CceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCC---
Q psy13807        115 EWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS---  191 (204)
Q Consensus       115 ~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~---  191 (204)
                      |||+|||++++|+||+++|+||+||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++|||++.++..   
T Consensus       503 g~y~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~rI~~~eIE~~l~~~p~V~ea~Vvg~~~~~~g~~~~a~Vv~~~~~~~~~  582 (663)
T 1ry2_A          503 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWST  582 (663)
T ss_dssp             TSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC-------
T ss_pred             CEEEcCCEEEEcCCCCEEEEeecCCEEEECCEEcCHHHHHHHHHhCCCcceEEEEEEecCCCCeEEEEEEEEcCCCcccc
Confidence            89999999999999999999999999999999999999999999999999999999998888899999999987643   


Q ss_pred             C-C------HHHHHHHHhc
Q psy13807        192 L-T------QDDIKTYCKG  203 (204)
Q Consensus       192 ~-~------~~~l~~~l~~  203 (204)
                      . +      .++|+++|++
T Consensus       583 ~~~~~~~~l~~~l~~~l~~  601 (663)
T 1ry2_A          583 ATDDELQDIKKHLVFTVRK  601 (663)
T ss_dssp             -----CCSHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHH
Confidence            2 2      4677777664

>1v25_A Long-chain-fatty-acid-COA synthetase; ligase, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.30A {Thermus thermophilus} SCOP: e.23.1.1 PDB: 1ult_A* 1v26_A*

Probab=100.00  E-value=9.8e-37  Score=257.78  Aligned_cols=193  Identities=27%  Similarity=0.458  Sum_probs=148.6

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|+++++|+++..|++......       .+++++|.+++||+++++++.+++ +.+|..           
T Consensus       259 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~l~~lr~i~~gG~~l~~~~~~~~-~~~g~~~~~~YG~TE~~  330 (541)
T 1v25_A          259 LVELFDGEGVTFTAGVPTVWLALADYLESTG-------HRLKTLRRLVVGGSAAPRSLIARF-ERMGVEVRQGYGLTETS  330 (541)
T ss_dssp             HHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-------CCCSSCCEEEECSSCCCHHHHHHH-HHTTCEEEEEEECGGGS
T ss_pred             HHHHHHhcCeeEEecchHHHHHHHhhhhccC-------CcchhccEEEECCCCCCHHHHHHH-HHhCCceeecccccccc
Confidence            6789999999999999999999987654333       568899999999999999999999 565543           


Q ss_pred             --------------------------------ceEEEEECCCCCcCCC--CCeeEEEEEeCcccccccCCcccccC---C
Q psy13807         71 --------------------------------HLIVKVVDKKGNIVPM--GMCGEVCYRGYNVMLGYYGEENKILE---N  113 (204)
Q Consensus        71 --------------------------------~~~v~i~d~~g~~~~~--~~~Gel~v~~~~~~~~y~~~~~~~~~---~  113 (204)
                                                      ++.++++|++|++++.  ++.|||+++||+++.|||++++.+..   .
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~~~~~~GEl~v~g~~v~~GY~~~p~~t~~~f~~  410 (541)
T 1v25_A          331 PVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTP  410 (541)
T ss_dssp             SEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCT
T ss_pred             cceecccccccccccCccccccccCCCCCcCCCcEEEEECCCCCCCCCCCCcceEEEEeCcchhccccCChhhhhhhccC
Confidence                                            3468899999999985  36899999999999999999998876   4


Q ss_pred             CCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC
Q psy13807        114 DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT  193 (204)
Q Consensus       114 ~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~  193 (204)
                      +|||+|||++++|+||+++|.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++|+|++. +...+
T Consensus       411 ~g~~~TGDlg~~d~dG~l~~~GR~~d~ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~-~~~~~  489 (541)
T 1v25_A          411 DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPR-GEKPT  489 (541)
T ss_dssp             TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---------
T ss_pred             CCCeEcCCEEEEcCCceEEEeecccceeeeCCEEECHHHHHHHHHhCCCceEEEEEEecCCCcCceEEEEEEEC-CCCCC
Confidence            89999999999999999999999999999999999999999999999999999999999988888999999886 44556


Q ss_pred             HHHHHHHHhc
Q psy13807        194 QDDIKTYCKG  203 (204)
Q Consensus       194 ~~~l~~~l~~  203 (204)
                      .++++++|++
T Consensus       490 ~~~l~~~~~~  499 (541)
T 1v25_A          490 PEELNEHLLK  499 (541)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHh
Confidence            6778777765

>3l8c_A D-alanine--poly(phosphoribitol) ligase subunit 1; structural genomics, DLTA, ATP-binding, cytoplasm, nucleotide-binding; 2.41A {Streptococcus pyogenes serotype M6} PDB: 3lgx_A*

Probab=100.00  E-value=4.1e-36  Score=252.75  Aligned_cols=195  Identities=20%  Similarity=0.196  Sum_probs=164.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh-CCc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF-GIK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~-g~~----------   70 (204)
                      +++.++++++|.+.++|+++..++.......       ..++++|.+++||+++++++.+++.+.+ +..          
T Consensus       230 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~  302 (521)
T 3l8c_A          230 LFTTIAQLPVGIWTSTPSFADMAMLSDDFCQ-------AKMPALTHFYFDGEELTVSTARKLFERFPSAKIINAYGPTEA  302 (521)
T ss_dssp             HHHHHHHSCCSEEEECHHHHHHHHTSTTCST-------TTCTTCCEEEECSSCCCHHHHHHHHHHCTTCEEEEEECCGGG
T ss_pred             HHHHHHHcCCcEEEeCCCHHHHHhhhhcccc-------ccCccceEEEEecccCCHHHHHHHHHHCCCceEEeCcCccHH
Confidence            6788999999999999999998887765554       6789999999999999999999999887 333          


Q ss_pred             ---------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC------CCCce
Q psy13807         71 ---------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE------NDEWF  117 (204)
Q Consensus        71 ---------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~------~~~~~  117 (204)
                                                 ++.++++|++|++++.|+.|||+++||+++.|||++++.+..      .++||
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~  382 (521)
T 3l8c_A          303 TVALSAIEITREMVDNYTRLPIGYPKPDSPTYIIDEDGKELSSGEQGEIIVTGPAVSKGYLNNPEKTAEAFFTFKGQPAY  382 (521)
T ss_dssp             SSCSEEEEECHHHHHHCSSCEEEEECTTSCEEEECTTSCBCCTTCCEEEEEESTTSCSCBTTCHHHHHHHEEEETTEEEE
T ss_pred             hhhhceeecccccccCCCccccccccCCCEEEEECCCcCCCCCCCceEEEecccccChhhcCCchHhhccCcCCCCceee
Confidence                                       467889999999999999999999999999999999987764      46799


Q ss_pred             eccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCC-CCceEEEEEEeCCCCCCC---
Q psy13807        118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDER-LGEVVVANIELKPGASLT---  193 (204)
Q Consensus       118 ~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~-~~~~~~a~v~~~~~~~~~---  193 (204)
                      +|||+|++|++|++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++. .++.++|+|++.++....   
T Consensus       383 ~TGDlg~~d~dG~l~~~GR~~d~i~~~G~~v~p~eIE~~l~~~p~V~~a~vv~~~~~~~~~~~~~a~vv~~~~~~~~~~~  462 (521)
T 3l8c_A          383 HTGDIGSLTEDNILLYGGRLDFQIKYAGYRIELEDVSQQLNQSPMVASAVAVPRYNKEHKVQNLLAYIVVKDGVKERFDR  462 (521)
T ss_dssp             EEEEEEEECSSSCEEEEEEGGGBCC-----CBHHHHHHHHHTSTTEEEEEEECCCSSSCC---CEEEEEECTTSGGGCSS
T ss_pred             eCCCEEEEeCCCeEEEeCcccceEeECCEEeCHHHHHHHHHcCCCcceEEEEEeecCCCCceEEEEEEEecCcccccccc
Confidence            9999999999999999999999999999999999999999999999999999987543 457899999998764321   


Q ss_pred             ----HHHHHHHHhc
Q psy13807        194 ----QDDIKTYCKG  203 (204)
Q Consensus       194 ----~~~l~~~l~~  203 (204)
                          .++|+++|++
T Consensus       463 ~~~~~~~l~~~l~~  476 (521)
T 3l8c_A          463 ELELTKAIKASVKD  476 (521)
T ss_dssp             HHHHHHHHHHHSGG
T ss_pred             chhhHHHHHHHHHh
Confidence                4677777765

>4gr5_A Non-ribosomal peptide synthetase; MBTH-like domain, adenylation domain, ligase, rossmann fold, binding; HET: APC TLA; 1.92A {Streptomyces lydicus} PDB: 4gr4_A

Probab=100.00  E-value=4.6e-37  Score=261.27  Aligned_cols=193  Identities=21%  Similarity=0.281  Sum_probs=111.6

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhC-Cc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFG-IK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g-~~----------   70 (204)
                      +++.|+++++|.+.++|++++.|++...          ..+++||.+++||+++++++.+++.+.++ ..          
T Consensus       295 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~----------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~l~~~YG~TE~  364 (570)
T 4gr5_A          295 IGELVARHGVTMLQLSASLFNFLVDEVP----------EAFEGVRYAITGGEPASVPHVAKARRDHPALRLGNGYGPAES  364 (570)
T ss_dssp             HHHHHHHHTCCEEEEEHHHHHHHHHHCG----------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGG
T ss_pred             HHHHHHHcCCcEEEecHHHHHHHHhhch----------hhCCCceEEEEecccCCHHHHHHHHHhCCCcEEEEeechhhh
Confidence            6789999999999999999999987532          35789999999999999999999988752 22          


Q ss_pred             --------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC-----------C
Q psy13807         71 --------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE-----------N  113 (204)
Q Consensus        71 --------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~-----------~  113 (204)
                                                ++.++|+|++|++++.|+.|||+++|++++.|||++++.+..           .
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~~~~~~~G~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~~~~~~~~  444 (570)
T 4gr5_A          365 MGFTTHHAVVAGDLSGTALPIGVPLAGKRAYVLDDDLKPAANGALGELYVAGAGLAHGYVSRPALTAERFVADPFAGPGG  444 (570)
T ss_dssp             CSCSEEEECCGGGTTSSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECTTCCSSC
T ss_pred             eeeeeeeeecccccCCCccccceeeCCCEEEEECCCCCCCCCCCcEEEEEeecccchhcCCCchhhhcccccCCCCCCCC
Confidence                                      678999999999999999999999999999999999887654           2


Q ss_pred             CCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCC-CCC
Q psy13807        114 DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG-ASL  192 (204)
Q Consensus       114 ~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~-~~~  192 (204)
                      ++||+|||++++|+||+++|.||+||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++|+|+..++ ...
T Consensus       445 ~~w~~TGDlg~~d~dG~l~~~GR~~d~Ik~~G~~v~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~~~~~~  524 (570)
T 4gr5_A          445 ERMYRTGDLARRRADGVLEYVGRADDQVKIRGFRVEPGEVEARLVGHPAVRQAAVLAQDSRLGDKQLVAYVVAERADAPP  524 (570)
T ss_dssp             CEEEEEEEEEEECTTSCEEEEEC---------------------------------------------------------
T ss_pred             CEEEeCCCeEEECCCCeEEEEcccCCEEEECcEEeCHHHHHHHHhcCCCcceEEEEEeeCCCCCeEEEEEEEecCCCCCc
Confidence            4799999999999999999999999999999999999999999999999999999999888888899999998654 345


Q ss_pred             CHHHHHHHHhcC
Q psy13807        193 TQDDIKTYCKGK  204 (204)
Q Consensus       193 ~~~~l~~~l~~~  204 (204)
                      +.++|+++|+++
T Consensus       525 ~~~~l~~~l~~~  536 (570)
T 4gr5_A          525 DAAELRRHVAEA  536 (570)
T ss_dssp             ------------
T ss_pred             CHHHHHHHHHhh
Confidence            677888887753

>2v7b_A Benzoate-coenzyme A ligase; benzoate oxidation, benzoate COA ligase; 1.84A {Burkholderia xenovorans}

Probab=100.00  E-value=1.2e-35  Score=250.41  Aligned_cols=195  Identities=27%  Similarity=0.418  Sum_probs=167.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|+++++|+++..+++......       ....++|.+++||+++++++.+++.+.+|+.           
T Consensus       266 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~~~~lr~~~~gGe~l~~~~~~~~~~~~g~~i~~~YG~TE~~  338 (529)
T 2v7b_A          266 IFARLVEHRPTVFYGVPTLYANMLVSPNLPA-------RADVAIRICTSAGEALPREIGERFTAHFGCEILDGIGSTEML  338 (529)
T ss_dssp             HHHHHHHSCCSEEEECHHHHHHHHTCTTCCC-------GGGCCCCEEEECSSCCCHHHHHHHHHHHSCCEEEEEECTTTS
T ss_pred             HHHHHHHhCCEEEEecHHHHHHHHhCccccc-------ccCCceEEEEEcCCCCCHHHHHHHHHHhCCceeeeEchhhcC
Confidence            6789999999999999999999987654332       2134899999999999999999999987765           


Q ss_pred             ---------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEEEec
Q psy13807         71 ---------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHE  127 (204)
Q Consensus        71 ---------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~~~  127 (204)
                                           ++.++++|++|+++|.|+.|||+++|++++.|||++++.+..  .++||+|||++++++
T Consensus       339 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~g~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~~~~~TGDl~~~~~  418 (529)
T 2v7b_A          339 HIFLSNRAGAVEYGTTGRPVPGYEIELRDEAGHAVPDGEVGDLYIKGPSAAVMYWNNREKSRATFLGEWIRSGDKYCRLP  418 (529)
T ss_dssp             SEEEECCTTCCCTTSCCEECTTCEEEEECTTSCBCCTTSCEEEEEECTTCCCCBTTCHHHHHHHEETTEEEEEEEEEECT
T ss_pred             ceeeccccCCCccCCcccCCCCCEEEEECCCCCCCCCCCccEEEEecCCcccccCCChHHHHHhhhcCCcccCceEEECC
Confidence                                 678999999999999999999999999999999999987765  589999999999999


Q ss_pred             CCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCC---CHHHHHHHHhcC
Q psy13807        128 NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASL---TQDDIKTYCKGK  204 (204)
Q Consensus       128 ~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~---~~~~l~~~l~~~  204 (204)
                      ||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++. ++..++.++++|++.++...   ..++|+++|+++
T Consensus       419 ~G~l~~~GR~dd~ik~~G~~v~p~eIE~~l~~~p~V~~~~vv~~-~~~~~~~~~a~vv~~~~~~~~~~~~~~l~~~l~~~  497 (529)
T 2v7b_A          419 NGCYVYAGRSDDMLKVSGQYVSPVEVEMVLVQHDAVLEAAVVGV-DHGGLVKTRAFVVLKREFAPSEILAEELKAFVKDR  497 (529)
T ss_dssp             TSCEEEEEEGGGCBC----CBCHHHHHHHHTTSTTEEEEEEEEE-EETTEEEEEEEEEECTTCCCCHHHHHHHHHHHHTT
T ss_pred             CccEEEeCccCCeEEECCEEECHHHHHHHHHhCCCcceEEEEEe-cCCCceEEEEEEEecCCCCcchhHHHHHHHHHHhh
Confidence            99999999999999999999999999999999999999999999 55567789999998766432   235788887753

>3nyq_A Malonyl-COA ligase; A/B topology ababa sandwich beta-barrel adenylate-forming EN fold; HET: MCA AMP; 1.43A {Streptomyces coelicolor} PDB: 3nyr_A*

Probab=100.00  E-value=3.3e-36  Score=252.68  Aligned_cols=197  Identities=28%  Similarity=0.463  Sum_probs=168.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.+ ++++|.++++|+++..+++......    .....++++|.+++||+++++++.+++.+.+|..           
T Consensus       236 ~~~~i-~~~~t~~~~~P~~~~~l~~~~~~~~----~~~~~l~~lr~i~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~  310 (505)
T 3nyq_A          236 AAREL-NDGATMLFGVPTMYHRIAETLPADP----ELAKALAGARLLVSGSAALPVHDHERIAAATGRRVIERYGMTETL  310 (505)
T ss_dssp             HHHHH-TTTCCEEEECHHHHHHHHHHGGGCH----HHHHHHHHCSEEEECSSCCCHHHHHHHHHHHSCCCEEEEEETTTE
T ss_pred             HHHHH-hhCCeEEEehHHHHHHHHHhhhcCc----hhhcccccceEEEECCCCCCHHHHHHHHHhcCCeeecccchhhcc
Confidence            45667 7899999999999999987532211    0113567899999999999999999999987765           


Q ss_pred             ---------------------ceEEEEECCCCCcCCC---CCeeEEEEEeCcccccccCCcccccC---CCCceeccceE
Q psy13807         71 ---------------------HLIVKVVDKKGNIVPM---GMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFF  123 (204)
Q Consensus        71 ---------------------~~~v~i~d~~g~~~~~---~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~  123 (204)
                                           ++.++++|++|++++.   |+.|||+++|++++.|||++++.+..   .++||+|||++
T Consensus       311 ~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~g~~~~~~~~g~~GEl~v~g~~v~~GY~~~~~~t~~~f~~~g~y~TGDl~  390 (505)
T 3nyq_A          311 MNTSVRADGEPRAGTVGVPLPGVELRLVEEDGTPIAALDGESVGEIQVRGPNLFTEYLNRPDATAAAFTEDGFFRTGDMA  390 (505)
T ss_dssp             EEEECCTTSCCCTTCCCEECTTCEEEEC-----CCCCCCSCCCEEEEEESTTSCCEETTCHHHHHHTBCTTSCEEEEEEE
T ss_pred             cccccCCCCCCCCCCcccCCCCCEEEEECCCCCCcccCCCCceEEEEEecCchhhhhCCChhHhhhhhcCCCCCccCCeE
Confidence                                 7889999999998886   89999999999999999999988765   58999999999


Q ss_pred             EEecCCeEEEEeec-cceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCC-CCCCCHHHHHHHH
Q psy13807        124 ILHENGYGQVVGRI-KDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKP-GASLTQDDIKTYC  201 (204)
Q Consensus       124 ~~~~~g~~~~~GR~-dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~-~~~~~~~~l~~~l  201 (204)
                      ++++||+++|+||+ ||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++|+|++.+ +...+.++|+++|
T Consensus       391 ~~~~dG~l~~~GR~~d~~ik~~G~~v~~~eIE~~l~~~p~V~~a~Vv~~~~~~~g~~l~a~vv~~~~~~~~~~~~l~~~l  470 (505)
T 3nyq_A          391 VRDPDGYVRIVGRKATDLIKSGGYKIGAGEIENALLEHPEVREAAVTGEPDPDLGERIVAWIVPADPAAPPALGTLADHV  470 (505)
T ss_dssp             EECTTSCEEEEEESSCCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSTTSCCCHHHHHHHH
T ss_pred             EECCCccEEEeCCccCceEEeCCEEECHHHHHHHHHHCcCccEEEEEeeECCCCCcEEEEEEEECCCCCCCCHHHHHHHH
Confidence            99999999999998 599999999999999999999999999999999999888999999999976 4566788999988


Q ss_pred             hc
Q psy13807        202 KG  203 (204)
Q Consensus       202 ~~  203 (204)
                      ++
T Consensus       471 ~~  472 (505)
T 3nyq_A          471 AA  472 (505)
T ss_dssp             HH
T ss_pred             Hh
Confidence            75

>1amu_A GRSA, gramicidin synthetase 1; peptide synthetase, adenylate forming; HET: PHE AMP; 1.90A {Brevibacillus brevis} SCOP: e.23.1.1

Probab=100.00  E-value=1.6e-35  Score=251.45  Aligned_cols=187  Identities=22%  Similarity=0.356  Sum_probs=166.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHH------hCCc-----
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDT------FGIK-----   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~------~g~~-----   70 (204)
                      +++.++++++|++.++|+++..+..             ..++++|.+++||+++++++.+++.+.      ||.+     
T Consensus       265 ~~~~i~~~~~t~~~~~P~~~~~l~~-------------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~YG~TE~~~~  331 (563)
T 1amu_A          265 FEQYINQKEITVITLPPTYVVHLDP-------------ERILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETTIC  331 (563)
T ss_dssp             HHHHHHHTTCCEEEECHHHHTTSCT-------------TTCCSCSEEEEESSCCCHHHHHHHTTTSEEEEEECCGGGSSC
T ss_pred             HHHHHHHcCCcEEEeCHHHHHHHHh-------------cccccccEEEEEEecCCHHHHHHHHhCCeEEEEECcCHHhHh
Confidence            6788999999999999998876532             246789999999999999999998764      3333     


Q ss_pred             ----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---------CCCceec
Q psy13807         71 ----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---------NDEWFPS  119 (204)
Q Consensus        71 ----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---------~~~~~~T  119 (204)
                                            ++.++|+|++|++++.|+.|||+++|++++.|||++++.+..         .++||+|
T Consensus       332 ~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~~~g~~GEl~v~g~~v~~GY~~~pe~t~~~f~~~~~~~g~~w~~T  411 (563)
T 1amu_A          332 ATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKT  411 (563)
T ss_dssp             SEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEE
T ss_pred             heeeecccccCCCCCcccceeCCCEEEEECCCcCCCCCCCcEEEEEechhhChhhCCCchhhhhhcccCCCCCCCEEEec
Confidence                                  678999999999999999999999999999999999986654         2469999


Q ss_pred             cceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHH
Q psy13807        120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKT  199 (204)
Q Consensus       120 GD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~  199 (204)
                      ||+|++|+||+++|.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++|+|+..+  ..+.++|++
T Consensus       412 GDlg~~d~dG~l~i~GR~~d~Ik~~G~~V~p~eIE~~l~~~p~V~~a~Vv~~~~~~~~~~~~a~vv~~~--~~~~~~l~~  489 (563)
T 1amu_A          412 GDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEK--HIPLEQLRQ  489 (563)
T ss_dssp             EEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESS--CCCHHHHHH
T ss_pred             CCEEEEcCCCeEEEeccccCEEEECCEEeCHHHHHHHHHhCCCcceEEEEEeecCCCCeEEEEEEEeCC--CCCHHHHHH
Confidence            999999999999999999999999999999999999999999999999999998888889999999864  467889999


Q ss_pred             HHhc
Q psy13807        200 YCKG  203 (204)
Q Consensus       200 ~l~~  203 (204)
                      +|++
T Consensus       490 ~l~~  493 (563)
T 1amu_A          490 FSSE  493 (563)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8875

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=100.00  E-value=1.9e-36  Score=271.19  Aligned_cols=196  Identities=28%  Similarity=0.457  Sum_probs=119.4

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh-CCc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF-GIK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~-g~~----------   70 (204)
                      +++.++++++|++.++|+++..|++......       .++++||.+++||+++++++.+++.+.| +..          
T Consensus       310 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~-------~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~~l~~~YG~TE~  382 (979)
T 3tsy_A          310 LLELIQRCKVTVAPMVPPIVLAIAKSSETEK-------YDLSSIRVVKSGAAPLGKELEDAVNAKFPNAKLGQGYGMTEA  382 (979)
T ss_dssp             HHHHHHHHTCCEEEECHHHHHHHHHCGGGGT-------SCCTTCCEEEESSCCCCSSHHHHHHHHCTTCEEEECEECGGG
T ss_pred             HHHHHHHhCCeEEEcHHHHHHHHHhCccccC-------CCccceEEEEEcCCCCCHHHHHHHHHHCCCCeEEeeechhhh
Confidence            6789999999999999999999998776555       6789999999999999999999999887 333          


Q ss_pred             ---------------------------ceEEEEECCC-CCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceec
Q psy13807         71 ---------------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPS  119 (204)
Q Consensus        71 ---------------------------~~~v~i~d~~-g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~T  119 (204)
                                                 ++.++++|++ |++++.|+.|||+++|++++.|||++|+.+..   .++||+|
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~g~~v~~GY~~~p~~t~~~f~~~g~~~T  462 (979)
T 3tsy_A          383 GPVLAMSLGFAKEPFPVKSGACGTVVRNAEMKIVDPDTGDSLSRNQPGEICIRGHQIMKGYLNNPAATAETIDKDGWLHT  462 (979)
T ss_dssp             CSEEEECGGGSSSCCCCCTTCCCEECSSCEEEEECTTSCCBCCTTCCEEEEEESTTSCSEETTCHHHHHHHBCTTSCEEE
T ss_pred             hHHHHhCCCCCCCccccCCCCcCcccCCcEEEEEeCCCCCCCCCCCccEEEEECCCccccccCChhhhhhhccCCCcEEc
Confidence                                       5678999955 99999999999999999999999999988876   6899999


Q ss_pred             cceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHH
Q psy13807        120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKT  199 (204)
Q Consensus       120 GD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~  199 (204)
                      ||++++++||+++|+||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++.++++|+..++...+.+++++
T Consensus       463 GDl~~~~~dG~l~~~GR~dd~ik~~G~~v~~~eIE~~l~~~p~V~~~~Vv~~~~~~~g~~~~a~vv~~~~~~~~~~~l~~  542 (979)
T 3tsy_A          463 GDIGLIDDDDELFIVDRLKELIKYKGFQVAPAELEALLIGHPDITDVAVVAMKEEAAGEVPVAFVVKSKDSELSEDDVKQ  542 (979)
T ss_dssp             EEEEEECTTSCEEEEEESCC------------------------------------------------------------
T ss_pred             CCEEEEcCCceEEEecCCCCEEEECCEEECHHHHHHHHHhCCCcceEEEEEecccCCCcEEEEEEEECCCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999888889999999988777778888888


Q ss_pred             HHhcC
Q psy13807        200 YCKGK  204 (204)
Q Consensus       200 ~l~~~  204 (204)
                      +|+++
T Consensus       543 ~l~~~  547 (979)
T 3tsy_A          543 FVSKQ  547 (979)
T ss_dssp             -----
T ss_pred             HHHHh
Confidence            88753

>3ipl_A 2-succinylbenzoate--COA ligase; structural genomics, acyl-protein synthetase, PSI-2, protein structure initiative; 2.30A {Staphylococcus aureus subsp}

Probab=100.00  E-value=6.7e-34  Score=238.25  Aligned_cols=184  Identities=26%  Similarity=0.367  Sum_probs=163.8

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|.+.++|++++.|++......          .++|.+++||+++++++.+++.+ ++.+           
T Consensus       243 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~----------~~lr~i~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TE~~  311 (501)
T 3ipl_A          243 ILTMIKNERITHISLVPQTLNWLMQQGLHEP----------YNLQKILLGGAKLSATMIETALQ-YNLPIYNSFGMTETC  311 (501)
T ss_dssp             HHHHHHHSCCCEEEECHHHHHHHHHHTCCSC----------TTCCEEEECSSCCCHHHHHHHHH-TTCCEEEEEEEGGGT
T ss_pred             HHHHHHHcCCcEEEchHHHHHHHHhcCCCCc----------CcccEEEEeCCCCCHHHHHHHHH-hCCCEeccccccccc
Confidence            6889999999999999999999988754332          38999999999999999999986 4544           


Q ss_pred             -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC-CCCceeccceEEEe
Q psy13807         71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE-NDEWFPSGDFFILH  126 (204)
Q Consensus        71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~-~~~~~~TGD~~~~~  126 (204)
                                             ++.++++|++     .++.|||+++|++++.|||++++.+.. .+|||+|||+++++
T Consensus       312 ~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~-----~~~~GEl~v~g~~~~~gY~~~~~~t~~~~~g~~~TGDl~~~~  386 (501)
T 3ipl_A          312 SQFLTATPEMLHARPDTVGMPSANVDVKIKNPN-----KEGHGELMIKGANVMNGYLYPTDLTGTFENGYFNTGDIAEID  386 (501)
T ss_dssp             EEEEEECHHHHHHCTTCCBEECTTCEEEEESCC-----SSCCEEEEEESTTSCSCCSBSTTCCCSEETTEEEEEEEEEEC
T ss_pred             cceeecCccccccCCCCCCCCCCCcEEEEecCC-----CCCccEEEEeccchhhhhCcChhhcchhcCCceecCCEEEEc
Confidence                                   5677777765     466799999999999999999988876 78999999999999


Q ss_pred             cCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       127 ~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      +||++++.||.||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++++..  ...+.++|+++|++
T Consensus       387 ~~G~l~~~GR~dd~ik~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~g~~~~a~v~~~--~~~~~~~l~~~l~~  461 (501)
T 3ipl_A          387 HEGYVMIYDRRKDLIISGGENIYPYQIETVAKQFPGISDAVCVGHPDDTWGQVPKLYFVSE--SDISKAQLIAYLSK  461 (501)
T ss_dssp             TTSCEEEEEECCCCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEES--SCCCHHHHHHHHHH
T ss_pred             CCCeEEEEccccceEEECCEEECHHHHHHHHHhCCCccEEEEEEEecccCCceEEEEEEeC--CCCCHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999988889999999874  35788899998875

>3ivr_A Putative long-chain-fatty-acid COA ligase; structural genomics, PSI-2, protein S initiative, fatty acid synthesis; HET: GOL; 2.00A {Rhodopseudomonas palustris} SCOP: e.23.1.0

Probab=100.00  E-value=1.2e-35  Score=249.34  Aligned_cols=191  Identities=29%  Similarity=0.482  Sum_probs=111.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh-CCc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF-GIK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~-g~~----------   70 (204)
                      +++.++++++|++.++|+++..+++...  .       ..++++|.++++|++   ++.+++.+.+ +..          
T Consensus       240 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~--~-------~~l~~lr~~~~~g~~---~~~~~~~~~~~~~~~~~~YG~TE~  307 (509)
T 3ivr_A          240 AARDIEAHKVTVMAEFAPMLGNILDQAA--P-------AQLASLRAVTGLDTP---ETIERFEATCPNATFWATFGQSET  307 (509)
T ss_dssp             HHHHHHHHTCCEEEEETTHHHHHHHHCC--G-------GGGTTCCEEEEECCH---HHHHHHHHHCTTCEEEEEEEEGGG
T ss_pred             HHHHHHHHCCcEEEecHHHHHHHHhccc--c-------cchhhhheecccCCh---HHHHHHHHhcCCCeEEcccCcccc
Confidence            6789999999999999999999988762  2       568899999999986   8888888887 443          


Q ss_pred             ---------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC--CCCceeccceEEEec
Q psy13807         71 ---------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--NDEWFPSGDFFILHE  127 (204)
Q Consensus        71 ---------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~~~~~TGD~~~~~~  127 (204)
                                           ++.++++|++|++++.|+.|||+++|++++.|||++++.+..  .++||+|||++++++
T Consensus       308 ~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g~~GEl~v~g~~~~~gY~~~~~~t~~~f~~g~~~TGDl~~~~~  387 (509)
T 3ivr_A          308 SGLSTFAPYRDRPKSAGRPLFWRTVAVVDAEDRPLPPGEVGEIVLRGPTVFKGYWNNAAATQHAFRNGWHHTGDMGRFDA  387 (509)
T ss_dssp             TEEEEEEEGGGSTTSCCEECTTCEEEEECTTSCBCCTTCCEEEEEESTTSCCEETTCHHHHHHHTGGGSEEEEEEEEECT
T ss_pred             ccccccCccccCCCcccccCCCcEEEEECCCCCCCCCCCceEEEEecCCccccccCCHHHhHHHhhcCCcccccEEEECC
Confidence                                 678899999999999999999999999999999999988876  689999999999999


Q ss_pred             CCeEEEEeec--cceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807        128 NGYGQVVGRI--KDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK  204 (204)
Q Consensus       128 ~g~~~~~GR~--dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  204 (204)
                      ||++++.||.  +|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++++|++.++...+.++|+++|+++
T Consensus       388 dG~l~~~GR~d~~d~ik~~G~~v~p~eiE~~l~~~p~V~~a~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  466 (509)
T 3ivr_A          388 DGYLFYAGRAPEKELIKTGGENVYPAEVEGALKQHPAIADAVVIGVPDPQWSEAIKAVCVCKPGESIAADALAEFVASL  466 (509)
T ss_dssp             TSCEEEEEEC---------------------------------------------------------------------
T ss_pred             CceEEEeCCCCcceeEEECCEEECHHHHHHHHHhCCCceeEEEEeccccccCcEEEEEEEeCCCCCCCHHHHHHHHHhh
Confidence            9999999999  9999999999999999999999999999999999998888999999999887777888888887753

>2vsq_A Surfactin synthetase subunit 3; ligase, peptidyl carrier protein, ligase phosphoprotein, TER module, phosphopantetheine; 2.60A {Bacillus subtilis}

Probab=100.00  E-value=1.6e-33  Score=258.35  Aligned_cols=190  Identities=24%  Similarity=0.343  Sum_probs=170.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.|+++++|+++++|++++.+.....          ..++++|.+++||+++++++.+++.+.++..           
T Consensus       689 l~~~i~~~~vt~~~~~p~~~~~l~~~~~----------~~~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~  758 (1304)
T 2vsq_A          689 LTDLILQENVNVMFATTALFNLLTDAGE----------DWMKGLRCILFGGERASVPHVRKALRIMGPGKLINCYGPTEG  758 (1304)
T ss_dssp             HHHHHHHHTCCEEEEEHHHHHHHHHHCS----------HHHHTCSEEEEESSCCCHHHHHHHHHHHCTTCEEEEECCGGG
T ss_pred             HHHHHHHcCCcEEEccHHHHHHHHhhch----------hcCCCccEEEEecCCCCHHHHHHHHHhCCCCEEEEeEChhHH
Confidence            6789999999999999999999876521          2467899999999999999999998876521           


Q ss_pred             --------------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---------CCC
Q psy13807         71 --------------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---------NDE  115 (204)
Q Consensus        71 --------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---------~~~  115 (204)
                                                ++.++|+|++++++|.|..|||+++|+++++||+++|+.++.         .++
T Consensus       759 ~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~GEl~i~G~~v~~GY~~~p~~T~~~f~~~p~~~g~~  838 (1304)
T 2vsq_A          759 TVFATAHVVHDLPDSISSLPIGKPISNASVYILNEQSQLQPFGAVGELCISGMGVSKGYVNRADLTKEKFIENPFKPGET  838 (1304)
T ss_dssp             SSCSEEEECCCCCSSCSSCCCBEECTTEEEEEECTTSCBCCTTCCEEEEEEETTCCCCBTTCHHHHHHHEEECTTSTTCE
T ss_pred             hHHheeeeccCccccCCCCCCceeeCCCEEEEECCCcCCCCCCCceEEEEeccccCccccCCcccchhhhccCCCCCCCe
Confidence                                      678899999999999999999999999999999999987754         256


Q ss_pred             ceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHH
Q psy13807        116 WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQD  195 (204)
Q Consensus       116 ~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~  195 (204)
                      ||+|||++++++||.++|+||+||+||++|+||.|.|||++|.++|+|.+++|++.+++..+..++|+|+..+  ..+.+
T Consensus       839 ~yrTGDl~~~~~dG~l~~~GR~d~qvki~G~rie~~eIE~~l~~~p~V~~a~V~~~~~~~~~~~l~a~vv~~~--~~~~~  916 (1304)
T 2vsq_A          839 LYRTGDLARWLPDGTIEYAGRIDDQVKIRGHRIELEEIEKQLQEYPGVKDAVVVADRHESGDASINAYLVNRT--QLSAE  916 (1304)
T ss_dssp             EEEEEEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHHHSSSCCEEEEEEECCSSSCCEEEEEEECSS--SSCHH
T ss_pred             eEecCCeEEEcCCCeEEEEcCCCCEEEECCEeeCHHHHHHHHHhCCCCceEEEEEEecCCCCEEEEEEEeCCC--CCCHH
Confidence            9999999999999999999999999999999999999999999999999999999988878889999999764  56788


Q ss_pred             HHHHHHhc
Q psy13807        196 DIKTYCKG  203 (204)
Q Consensus       196 ~l~~~l~~  203 (204)
                      +++++|++
T Consensus       917 ~l~~~l~~  924 (1304)
T 2vsq_A          917 DVKAHLKK  924 (1304)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            89988875

>3ite_A SIDN siderophore synthetase; ligase, non-ribosomal peptide synthesis, NRPS, sidna3, fungal, endophyte; HET: MSE; 2.00A {Neotyphodium lolii}

Probab=100.00  E-value=1.6e-34  Score=245.10  Aligned_cols=192  Identities=15%  Similarity=0.195  Sum_probs=109.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.++++++|++.++|++++.+....           .++++||.+++||+++++++.+++.+.++..           
T Consensus       264 ~~~~i~~~~~t~~~~~P~~l~~~~~~~-----------~~~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~YG~TE~~  332 (562)
T 3ite_A          264 LPRTFRELGVTHAGIVPSLLDQTGLVP-----------EDAPHLVYLGVGGEKMTPRTQQIWSSSDRVALVNVYGPTEVT  332 (562)
T ss_dssp             HHHHHHHTTCCEEEECHHHHHHHTCCG-----------GGSTTCCEEEEESSCCCHHHHHHHTTCSSCEEEEEECCGGGC
T ss_pred             HHHHHHHcCCCEEEcCHHHHhhcccCc-----------cccCceEEEEEecCCCCHHHHHHHhhCCCcEEEEeeccchhe
Confidence            578899999999999999888764322           4678999999999999999999998765543           


Q ss_pred             ----------------------ceEEEEECCC-CCcCCCCCeeEEEEEeCcccccccCCcccccC--CC--CceeccceE
Q psy13807         71 ----------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYYGEENKILE--ND--EWFPSGDFF  123 (204)
Q Consensus        71 ----------------------~~~v~i~d~~-g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~--~~--~~~~TGD~~  123 (204)
                                            ++.++++|++ +.+++.|+.|||+++|++++.|||++++.+..  .+  +||+|||++
T Consensus       333 ~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~~g~~GEl~v~g~~v~~GY~~~p~~t~~~~~~g~~w~~TGDlg  412 (562)
T 3ite_A          333 IGCSAGRILPDSDTRCIGHPLGDSVAHVLAPGSNEHVKKGMAGELVIEGSLVANGYLNRPDAKGFCDINGRKMYRTGDIV  412 (562)
T ss_dssp             SCSEEEECCTTSCTTEEEEECTTCEEEEECTTSSCBCCTTSCEEEEEESTTSCCEESSCTTCCSEEEETTEEEEEEEEEE
T ss_pred             eeeeeeeecCCCCCccccccCCCCeEEEEeCCCCCCCCCCCceEEEEeccccchhhCCCccccccccCCCCEEEecCCEE
Confidence                                  5678899865 78899999999999999999999999987765  34  499999999


Q ss_pred             EEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcC-CCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC---------
Q psy13807        124 ILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTH-PDVVEAQVYGVPDERLGEVVVANIELKPGASLT---------  193 (204)
Q Consensus       124 ~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~-~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~---------  193 (204)
                      ++|+||+++|.||.||+||++|++|+|.|||++|.++ +.+.+++|++.+++..++..+++++..++....         
T Consensus       413 ~~d~dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~  492 (562)
T 3ite_A          413 RMDADSSILFLGRKDEQVKVRGQRLELGEVSEVIRSLSPTDIDVVTLLLNHPGTSKQFLVSFVASSGAAVRGELRWINEN  492 (562)
T ss_dssp             EECTTSCEEEEEEC------------------------------------------------------------------
T ss_pred             EEcCCCeEEEEccccCEEeECcEEECHHHHHHHHHhcCCCceeEEEEEecCCCCcceEEEEEEecccccccccccccccc
Confidence            9999999999999999999999999999999999998 888899999888877666655555554333222         


Q ss_pred             ----HHHHHHHHhcC
Q psy13807        194 ----QDDIKTYCKGK  204 (204)
Q Consensus       194 ----~~~l~~~l~~~  204 (204)
                          .++|+++|+++
T Consensus       493 ~~~~~~~l~~~~~~~  507 (562)
T 3ite_A          493 YKEINNSLRQACEQT  507 (562)
T ss_dssp             ---------------
T ss_pred             hhhHHHHHHHHHHhh
Confidence                24677777653

>4dg8_A PA1221; ANL superfamily, adenylation domain, peptidyl carrier protei ribosomal peptide synthetase, NRPS, valine adenylation, LIG; HET: AMP; 2.15A {Pseudomonas aeruginosa} PDB: 4dg9_A*

Probab=100.00  E-value=5.2e-33  Score=238.34  Aligned_cols=174  Identities=14%  Similarity=0.171  Sum_probs=151.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh-CCc----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF-GIK----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~-g~~----------   70 (204)
                      +++.|+++++|.+.++|++++.+++...          ..+++||.+++||+++++++.+++.+.+ +..          
T Consensus       245 ~~~~i~~~~vt~~~~~Ps~~~~l~~~~~----------~~l~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~  314 (620)
T 4dg8_A          245 LRQLIGERGADSAWLTASLFNTLVDLDP----------DCLGGLRQLLTGGDILSVPHVRRALLRHPRLHLVNGYGPTEN  314 (620)
T ss_dssp             HHHHHHTTCCCEEEEEHHHHHHHHHHCG----------GGGTTCSEEEEESSCCCHHHHHHHHHHCTTCEEEEEECCGGG
T ss_pred             HHHHHHHhCCcEEEccHHHHHHHHhcCh----------hhCCCccEEEEEeCcCCHHHHHHHHHhCCCeEEEeeEchhhh
Confidence            6789999999999999999999886421          4578999999999999998888887664 222          


Q ss_pred             --------------------------ceEEEEECCCCCc-CCCCCeeEEEEEeCcccccccCCcccccC---C-------
Q psy13807         71 --------------------------HLIVKVVDKKGNI-VPMGMCGEVCYRGYNVMLGYYGEENKILE---N-------  113 (204)
Q Consensus        71 --------------------------~~~v~i~d~~g~~-~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~-------  113 (204)
                                                ++.++++|+++.+ +|.|+.|||+++|++++.|||++++.+..   .       
T Consensus       315 ~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~~~~g~~GEl~i~G~~v~~GY~~~p~~t~~~f~~~p~~~~~  394 (620)
T 4dg8_A          315 TTFTCCHVVTDDDLEEDDIPIGKAIAGTAVLLLDEHGQEIAEPDRAGEIVAFGAGLAQGYRNDAARTRASFVELPYRGRL  394 (620)
T ss_dssp             CSCSEEEECCTGGGGSSSCCCBEECTTEEEEEECTTSCBCCSSSCCEEEEEEETTCCSEETTCHHHHHHHEEEEEETTEE
T ss_pred             hhheEEEeccccccCCCCCCceecccCcEEEEECccCCCCCCCCCceEEEEeccccccccCCChhhhhhhhccCCCCCCC
Confidence                                      6789999999887 78999999999999999999999988765   1       


Q ss_pred             CCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEe
Q psy13807        114 DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIEL  186 (204)
Q Consensus       114 ~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~  186 (204)
                      .+||+|||++++++||+++|+||.||+||++|++|+|.|||++|.++|+|.+++|++.+++..++ ++++++.
T Consensus       395 ~~~yrTGDl~~~~~dG~l~~~GR~dd~Ik~~G~ri~~~eIE~~l~~~p~V~~a~Vv~~~~~~~~~-lv~~~~~  466 (620)
T 4dg8_A          395 LRAYRTGDRARYDEQGRLRFIGRGDGQVKLNGYRLDLPALEQRFRRQPGILDCALLVRERNGVKQ-LLCAWTG  466 (620)
T ss_dssp             EEEEEEEEEEEECTTSCEEEEECSSSEEEETTEEEEHHHHHHHHHTSTTEEEEEEEEEEETTEEE-EEEEEEE
T ss_pred             ceEEeCCCEEEECCCCeEEEEccCCCEEEECCEEcCHHHHHHHHHhCCCccEEEEEEEeCCCceE-EEEEEec
Confidence            17999999999999999999999999999999999999999999999999999999998774444 4444443

>3kxw_A Saframycin MX1 synthetase B; fatty acid AMP ligase, SGX, acyl adenylate, structural genom 2, protein structure initiative; HET: 1ZZ; 1.85A {Legionella pneumophila subsp} PDB: 3lnv_A*

Probab=100.00  E-value=3.7e-33  Score=237.81  Aligned_cols=196  Identities=23%  Similarity=0.298  Sum_probs=162.7

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC------c-----
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI------K-----   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~------~-----   70 (204)
                      +++.|+++++|.+.++|+++..+++.......    ...++++||.+++||+++++++.+++.+.|+.      .     
T Consensus       252 ~~~~i~~~~~t~~~~~p~~~~~l~~~~~~~~~----~~~~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~~~~~Y  327 (590)
T 3kxw_A          252 WLKHITKYKATISGSPNFAYDYCVKRIREEKK----EGLDLSSWVTAFNGAEPVREETMEHFYQAFKEFGFRKEAFYPCY  327 (590)
T ss_dssp             HHHHHHHHTCSEEEECTHHHHHHHHHCCGGGG----TTCCCTTCCEEEECSSCCCHHHHHHHHHHHGGGTCCGGGEEEEE
T ss_pred             HHHHHHHhCCeeecCChhHHHHHHHHhhhhhc----cCCCchhhHHHhhCCCCCCHHHHHHHHHHHHHcCCCcccccccc
Confidence            67899999999999999999998876432110    01578999999999999999999999988731      1     


Q ss_pred             ----------------------------------------------------ceEEEEECCC-CCcCCCCCeeEEEEEeC
Q psy13807         71 ----------------------------------------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGY   97 (204)
Q Consensus        71 ----------------------------------------------------~~~v~i~d~~-g~~~~~~~~Gel~v~~~   97 (204)
                                                                          ...++|+|++ +.+++.|+.|||+++||
T Consensus       328 G~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~~v~i~d~~~~~~~~~g~~GEl~v~g~  407 (590)
T 3kxw_A          328 GLAEATLLVTGGTPGSSYKTLTLAKEQFQDHRVHFADDNSPGSYKLVSSGNPIQEVKIIDPDTLIPCDFDQVGEIWVQSN  407 (590)
T ss_dssp             ECGGGSSEEEECCTTSCCCEEEECSCCCSSSBCCBCCTTCTTCEEEECCCEESSEEEEECTTTCCBCCTTBCEEEEEEST
T ss_pred             ccccccceeecccCCCCceeeeecHHHHhcCceeeccCCCCCcceEeccCCCCCCeEEEcCCCCcCCCCCCEEEEEEeCC
Confidence                                                                0126788887 89999999999999999


Q ss_pred             cccccccCCcccccC--C-------CC--ceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHH-hcCCCcc-
Q psy13807         98 NVMLGYYGEENKILE--N-------DE--WFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVL-QTHPDVV-  164 (204)
Q Consensus        98 ~~~~~y~~~~~~~~~--~-------~~--~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l-~~~~~V~-  164 (204)
                      +++.|||++++.+..  .       +|  ||+|||++++| +|+++|.||.||+||++|++|+|.|||++| ..+|+|. 
T Consensus       408 ~v~~GY~~~p~~t~~~f~~~~~~~~~g~~~~~TGDlg~~d-dG~l~~~GR~dd~Ik~~G~~v~p~eIE~~l~~~~~~v~~  486 (590)
T 3kxw_A          408 SVAKGYWNQPEETRHAFAGKIKDDERSAIYLRTGDLGFLH-ENELYVTGRIKDLIIIYGKNHYPQDIEFSLMHSPLHHVL  486 (590)
T ss_dssp             TSCCCBTTCHHHHHHHHCBCCTTC---CCBEEEEEEEEEE-TTEEEEEEESSCHHHHHHHTTHHHHHHHHHHHSGGGGGE
T ss_pred             cccccccCChhHHHHHHhccccCCCCCCcEEecCcEEEEE-CCEEEEEcCccceEEECCEecCHHHHHHHHHhcCccccC
Confidence            999999999987754  1       24  99999999999 999999999999999999999999999998 7889998 


Q ss_pred             -eEEEEeeeCCCCCceEEEEEEeCCCC--CCCHHHHHHHHhc
Q psy13807        165 -EAQVYGVPDERLGEVVVANIELKPGA--SLTQDDIKTYCKG  203 (204)
Q Consensus       165 -~~~v~~~~~~~~~~~~~a~v~~~~~~--~~~~~~l~~~l~~  203 (204)
                       +++|++++++. ++.+++++++.++.  ..+.++++++|++
T Consensus       487 ~~~~v~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~l~~~l~~  527 (590)
T 3kxw_A          487 GKCAAFVIQEEH-EYKLTVMCEVKNRFMDDVAQDNLFNEIFE  527 (590)
T ss_dssp             EEEEEEEEEETT-EEEEEEEEEESCTTCCHHHHHHHHHHHHH
T ss_pred             ccEEEEEecCCC-CceEEEEEEeccccccchhHHHHHHHHHH
Confidence             89999998775 67888888887653  3355667766654

>3qov_A Phenylacetate-coenzyme A ligase; acetyl-COA synthetase-like, structural genomics, joint cente structural genomics, JCSG; HET: MSE ADP COA; 2.20A {Bacteroides thetaiotaomicron} PDB: 3s89_A*

Probab=99.98  E-value=3.8e-31  Score=218.11  Aligned_cols=186  Identities=19%  Similarity=0.257  Sum_probs=158.0

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.|+++++|+++++|+++..|++.......     ...++++|.+++||+++++++.+++.+.||+.           
T Consensus       170 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~-----~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~  244 (436)
T 3qov_A          170 QIKFISDFKTTALHAIPSYAIRLAEVFQEEGI-----DPRETTLKTLVIGAEPHTDEQRRKIERMLNVKAYNSFGMTEMN  244 (436)
T ss_dssp             HHHHHHHHTCCEEECCHHHHHHHHHHHHHTTC-----CTTSSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEEGGGT
T ss_pred             HHHHHHHHCCCEEEECHHHHHHHHHHHHHcCC-----CcccCCccEEEEeCCcCCHHHHHHHHHHhCccEEecCcchhhc
Confidence            67899999999999999999999887543330     02478999999999999999999999998765           


Q ss_pred             -------------------ceEEEEEC-CCCCcCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEecCC-
Q psy13807         71 -------------------HLIVKVVD-KKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHENG-  129 (204)
Q Consensus        71 -------------------~~~v~i~d-~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~~g-  129 (204)
                                         ++.++++| ++|++++.|+.|||++++++...          ...+||+|||+++++++| 
T Consensus       245 ~~~~~~~~~~~~g~~~~~~~~~v~i~d~~~g~~~~~g~~Gel~v~~~~~~~----------~~~~~y~TGDl~~~~~~gc  314 (436)
T 3qov_A          245 GPGVAFECQEQNGMHFWEDCYLVEIIDPETGEPVPEGEIGELVLTTLDREM----------MPLIRYRTRDLTRILPGKC  314 (436)
T ss_dssp             EEEEEEECTTCSSEEECTTTEEEEEECTTTCSBCSTTCCEEEEEEESSCCS----------SCCCSEEEEEEECEECSCC
T ss_pred             CCeeEEecCCCCeeEEccCceEEEEEECCCCCCCCCCCceEEEEeccCcCC----------ceEEEEEcCCEEEEcCCCC
Confidence                               56788999 67999999999999999853211          146799999999999998 


Q ss_pred             -----e---EEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC----HHHH
Q psy13807        130 -----Y---GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT----QDDI  197 (204)
Q Consensus       130 -----~---~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~----~~~l  197 (204)
                           +   +++.||.||+||++|.+|+|.+||++|.++|+|.+++|++.+++..++.++++|++. +...+    .+++
T Consensus       315 ~cG~~~~~il~i~GR~dd~ik~~G~~v~p~eiE~~l~~~p~v~~~~vv~~~~~~~~~~l~a~v~~~-~~~~~~~~~~~~l  393 (436)
T 3qov_A          315 PCGRTHLRIDRIKGRSDDMFIIKGVNIFPMQVEKILVQFPELGSNYLITLETVNNQDEMIVEVELS-DLSTDNYIELEKI  393 (436)
T ss_dssp             TTCCCSCEECCCCCBSSSCEEETTEEECHHHHHHHHTTCTTEEEEEEEEEEEETTEEEEEEEEEEC-TTCCCCHHHHHHH
T ss_pred             CCCCCccccCcccCccCCEEEECCEEECHHHHHHHHHhCcCcCCcEEEEEEcCCCCcEEEEEEEEc-CccccchhhHHHH
Confidence                 5   699999999999999999999999999999999999999998877788999999998 55444    5666


Q ss_pred             HHHHhc
Q psy13807        198 KTYCKG  203 (204)
Q Consensus       198 ~~~l~~  203 (204)
                      ++.|++
T Consensus       394 ~~~l~~  399 (436)
T 3qov_A          394 RRDIIR  399 (436)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666654

>2y27_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: MSE PG4 ATP; 1.60A {Burkholderia cenocepacia} PDB: 2y4n_A*

Probab=99.97  E-value=3.5e-30  Score=212.38  Aligned_cols=187  Identities=19%  Similarity=0.254  Sum_probs=153.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.|+++++|+++++|+++..|++........     ..++++|.+++||+++++++.+++.+.||+.           
T Consensus       174 ~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~~-----~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~  248 (437)
T 2y27_A          174 QVQLIQDFRPDIIMVTPSYMLSIADEIERQGLD-----PVQSSLRIGIFGAEPWTNDMRVAIEQRMGIDAVDIYGLSEVM  248 (437)
T ss_dssp             HHHHHHHHCCSEEEECHHHHHHHHHHHHHTTCC-----GGGSSCCEEEEESSCCCHHHHHHHHHHHTSEEEEEEEETTTT
T ss_pred             HHHHHHHhCCCEEEECHHHHHHHHHHHHHcCCC-----cccCCeeEEEEcCccCCHHHHHHHHHHHCcCEEecCCchhhc
Confidence            678999999999999999999998765322200     1357899999999999999999999887765           


Q ss_pred             --------------------ceEEEEECCC-CCcCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEec-C
Q psy13807         71 --------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHE-N  128 (204)
Q Consensus        71 --------------------~~~v~i~d~~-g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~-~  128 (204)
                                          ++.++++|++ |+++|.|+.|||++++.+..          ....+||+|||++++++ +
T Consensus       249 g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~g~~Gel~v~~~t~~----------~~~~~~y~TGDl~~~~~~~  318 (437)
T 2y27_A          249 GPGVASECVETKDGPTIWEDHFYPEIIDPETGEVLPDGELGELVFTSLTKE----------ALPIIRYRTRDLTRLLPGT  318 (437)
T ss_dssp             EEEEEECCTTTCSSCEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSCS----------SSCCCSEEEEEEECEECCS
T ss_pred             CCeeEEecCCCCCceeEccCceEEEEEcCCCCCCCCCCCccEEEEecCCcC----------CchhheeecCCEEEEeCCC
Confidence                                3567788864 99999999999999984311          01467999999999999 6


Q ss_pred             CeE-----EEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCC---CCHHHHHHH
Q psy13807        129 GYG-----QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS---LTQDDIKTY  200 (204)
Q Consensus       129 g~~-----~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~---~~~~~l~~~  200 (204)
                      |++     ++.||.||+||++|.+|+|.+||++|.++|+|.++++++++++..++.++++|++.++..   .+.++++++
T Consensus       319 G~~~~~i~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~l~a~v~~~~~~~~~~~~~~~l~~~  398 (437)
T 2y27_A          319 ARTMRRMEKITGRSDDMMIVRGVNVFPTQIEEQLLKQRALAPHYQIVLTKEGPLDVLTLNVEPCPETAPDTAAIQVAKQA  398 (437)
T ss_dssp             SSSSCEECCCCEEGGGCEEETTEEECHHHHHHHHTTCTTBCSCCEEEEEEETTEEEEEEEECBCTTTTTCHHHHHHHHHH
T ss_pred             CCCccccCccccccCCeEEECCeEECHHHHHHHHHhCcCcCccEEEEEeecCCCceEEEEEEECCCccchhhhHHHHHHH
Confidence            985     899999999999999999999999999999999999998887767789999999876643   234566666


Q ss_pred             Hhc
Q psy13807        201 CKG  203 (204)
Q Consensus       201 l~~  203 (204)
                      |++
T Consensus       399 l~~  401 (437)
T 2y27_A          399 LAY  401 (437)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>2y4o_A Phenylacetate-coenzyme A ligase; phenylacetic acid degradation pathway; HET: DLL; 1.90A {Burkholderia cenocepacia}

Probab=99.97  E-value=5.2e-30  Score=211.71  Aligned_cols=187  Identities=19%  Similarity=0.278  Sum_probs=153.8

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      +++.|+++++|+++++|+++..|++.......     ...++++|.+++||+++++++.+++.+.||+.           
T Consensus       176 ~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~~-----~~~~~~lr~i~~gGe~l~~~~~~~~~~~~g~~v~~~YG~TE~~  250 (443)
T 2y4o_A          176 QVQLIRDFEPKIILVTPSYMLNLIDEMVRQGM-----DPAESSLKIGIFGAEPWTQALRNEVETRVGIDALDIYGLSEVM  250 (443)
T ss_dssp             HHHHHHHHCCSEEEECHHHHHHHHHHHHHTTC-----CGGGSSCCEEEEESSCCCHHHHHHHHHHHTCEEEEEEEETTTT
T ss_pred             HHHHHHHhCCcEEEECHHHHHHHHHHHHHcCC-----CcccCCceEEEECCCcCCHHHHHHHHHHhCcCEEeccCchhhc
Confidence            67899999999999999999999876533220     02357999999999999999999999887765           


Q ss_pred             --------------------ceEEEEECC-CCCcCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEecC-
Q psy13807         71 --------------------HLIVKVVDK-KGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHEN-  128 (204)
Q Consensus        71 --------------------~~~v~i~d~-~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~~-  128 (204)
                                          ++.++++|+ +|+++|.|+.|||++++.+..          ....+||+|||+++++++ 
T Consensus       251 g~~~~~~~~~~~~g~~~~~~~~~~~i~d~~~g~~~~~G~~Gel~v~~~t~~----------~~p~~~y~TGDl~~~~~~c  320 (443)
T 2y4o_A          251 GPGVACECVETKDGPVIWEDHFYPEIIDPVTGEVLPDGSQGELVFTSLTKE----------AMPVIRYRTRDLTALLPPT  320 (443)
T ss_dssp             EEEEEEECTTTCCSEEECTTTEEEEEECTTTCCBCCTTCCEEEEEEESSCS----------SSCCSSEEEEEEECEECCS
T ss_pred             CCeEEeccCCCCCceEEccCCeEEEEEcCCCCCCCCCCCceEEEEeCCCcc----------cChhheeecCCEEEEcCCC
Confidence                                356778885 499999999999999984311          013679999999999999 


Q ss_pred             CeE-----EEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCC--CC---CCCHHHHH
Q psy13807        129 GYG-----QVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKP--GA---SLTQDDIK  198 (204)
Q Consensus       129 g~~-----~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~--~~---~~~~~~l~  198 (204)
                      |++     ++.||.||+||++|.+|+|.+||++|.++|+|.++++++++++..++.++++|++.+  +.   ..+.++++
T Consensus       321 G~~~~~l~~i~GR~~d~i~~~G~~v~p~eiE~~l~~~p~V~~~~vv~~~~~~~~~~~~a~v~~~~~~~~~~~~~~~~~l~  400 (443)
T 2y4o_A          321 ARAMRRLAKITGRSDDMLIVRGVNVFPSQIEEIVVALPLLSGQFQITLSRDGHMDRLDLAVELRSEAAASVTDGERAALA  400 (443)
T ss_dssp             SSSSCEECCCCEESSCCEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEEETTEEEEEEEEEECHHHHTTCCHHHHHHHH
T ss_pred             CCCccccCccccccCCeEEECCEEECHHHHHHHHHhCcCcCccEEEEEecCCCCceEEEEEEECCcccccchhhHHHHHH
Confidence            986     899999999999999999999999999999999999999887666788999999875  31   23345666


Q ss_pred             HHHhc
Q psy13807        199 TYCKG  203 (204)
Q Consensus       199 ~~l~~  203 (204)
                      ++|++
T Consensus       401 ~~l~~  405 (443)
T 2y4o_A          401 RELQH  405 (443)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66654

>4gs5_A Acyl-COA synthetase (AMP-forming)/AMP-acid ligase protein; structural genomics, PSI-biology; 2.02A {Dyadobacter fermentans}

Probab=99.96  E-value=2.9e-29  Score=202.20  Aligned_cols=191  Identities=16%  Similarity=0.169  Sum_probs=149.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCcceEEEEECCCC
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIKHLIVKVVDKKG   81 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~~~~v~i~d~~g   81 (204)
                      +++.++++++|.+.++|++++.+++.....        .++++||.+++||+++++++.+++.+ ++.+-+..+-..+.+
T Consensus       115 ~~~~i~~~~~t~~~~~P~~l~~ll~~~~~~--------~~l~~lr~v~~gG~~l~~~~~~~~~~-~~~~~~~~YG~TEt~  185 (358)
T 4gs5_A          115 PLAGLDHADFDFVAMVPMQLQSILENSATS--------GQVDRLGKVLLGGAPVNHALAMQISD-LAMPVYQSYGMTETV  185 (358)
T ss_dssp             TTTTCSSCCCSEEEECHHHHHHHHHCTTTG--------GGGGGGCSEEECSSCCCHHHHHHHHT-CSSCEEEEEECGGGS
T ss_pred             HHHHHHHhCCeEEEcChHHHHHhhcccccc--------ccCCcceEEEEcccCCCchheecccc-cCceEEecccccccc
Confidence            356788999999999999999998865422        46889999999999999999999985 455422222222211


Q ss_pred             -----CcCCCCCeeEEEEEeCcccccccCCcccccC----CCCceeccceEEEecCCeEEEEeeccceEEeCceeeChHH
Q psy13807         82 -----NIVPMGMCGEVCYRGYNVMLGYYGEENKILE----NDEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKE  152 (204)
Q Consensus        82 -----~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~----~~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~  152 (204)
                           ++++.+..|++++..|++..+|.++.+....    .++||+|||++++|++| ++++||.||+||++|++|+|.+
T Consensus       186 ~~~~~~~~~~~~~g~~~~~~pgv~~~~~~~Gel~~~g~~~~~g~~~TGDlg~~d~~g-~~~~GR~dd~Ik~~G~~v~p~e  264 (358)
T 4gs5_A          186 SHVALKALNGPEASELYVFLPGIQYGVDERGCLHISGAVTNGQTVQTNDLVEIHGNA-FQWIGRADNVINSGGVKIVLDQ  264 (358)
T ss_dssp             SEEEEEECSSTTCCSCEEECTTCEEEECTTSEEEEESGGGTTCCEEEEEEEEECSSE-EEEEEEGGGEEEETTEEEEHHH
T ss_pred             ceeecccccccccceeeccCCCeEEEecCcCceEEecccccCcceecCCccccccCc-eEEcccccCeEEECCEEECHHH
Confidence                 2344556788888888888888877665443    68999999999999988 6678999999999999999999


Q ss_pred             HHHHHh---cCCCcceEEEE-eeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        153 IEYVLQ---THPDVVEAQVY-GVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       153 ie~~l~---~~~~V~~~~v~-~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      ||++|.   .||+|.+++|+ +.+++..++.++++|+..++ ....++|+++|++
T Consensus       265 IE~~l~~~~~~p~V~~a~vv~~~~d~~~ge~~~a~v~~~~~-~~~~~~l~~~l~~  318 (358)
T 4gs5_A          265 IDQRIAAVFHHLNIGNAFFCWWEPDAKLGQKLVLVIENAMP-EALTERLTAEIRS  318 (358)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEEEEEETTTEEEEEEEEESCCC-HHHHHHHHHHHHH
T ss_pred             HHHHHHHhccCCCccEEEEEEecCCccCCEEEEEEEECCCC-CcCHHHHHHHHHh
Confidence            998774   57999998876 66778888899998886543 4456778888775

>3t5a_A Long-chain-fatty-acid--AMP ligase FADD28; acetyl-COA synthetase like fold, AMP-binding; 2.05A {Mycobacterium tuberculosis} PDB: 3e53_A

Probab=99.85  E-value=1.6e-21  Score=162.05  Aligned_cols=126  Identities=20%  Similarity=0.344  Sum_probs=105.4

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhcc----CCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCC------c-
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSI----QPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGI------K-   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~----~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~------~-   70 (204)
                      +++.++++++| +.++|+++..++...    ....       .++++||.+++||+++++++.+++.+.|+.      . 
T Consensus       274 ~~~~i~~~~~t-~~~~p~~~~~l~~~~~~~~~~~~-------~~l~~lr~i~~gG~~l~~~~~~~~~~~~~~~~~~~~~~  345 (480)
T 3t5a_A          274 WMHLMASDFHA-FSAAPNFAFELAARRTTDDDMAG-------RDLGNILTILSGSERVQAATIKRFADRFARFNLQERVI  345 (480)
T ss_dssp             HHHHTTSSSEE-EEEECHHHHHHHHHHCCTGGGTT-------CCCTTCCEEEECCTTCCHHHHHHHHHHSGGGTCCGGGE
T ss_pred             HHHHHHhhcee-EeeChHHHHHHHHhhcCcccccc-------cchhhhheeeecCCcCCHHHHHHHHHHHhhcCCChhhc
Confidence            67889999999 888999888777642    2222       578999999999999999999999998742      1 


Q ss_pred             ------------------c-------------------------------------eEEEEECCC-CCcCCCCCeeEEEE
Q psy13807         71 ------------------H-------------------------------------LIVKVVDKK-GNIVPMGMCGEVCY   94 (204)
Q Consensus        71 ------------------~-------------------------------------~~v~i~d~~-g~~~~~~~~Gel~v   94 (204)
                                        .                                     +.++|+|++ |+++|.|+.|||++
T Consensus       346 ~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~G~p~~~~~~ivd~~~g~~~~~g~~GEl~v  425 (480)
T 3t5a_A          346 RPSYWLAEATVYVATSKPGQPPETVDFDTESLSAGHAKPCAGGGATSLISYMLPRSPIVRIVDSDTCIECPDGTVGEIWV  425 (480)
T ss_dssp             EEEEEETTTTEEEEECCTTSSCCEEEECHHHHHTTBCCCCCSSSCEEEECEECCSSSEEEEEETTTTEECCTTBCEEEEE
T ss_pred             cccccccccceeEeecccCCCcceEEecHHHhccCceeecCCCCcceeeecCcccCCEEEEEcCCCCcCCCCCCEEEEEE
Confidence                              0                                     137888877 79999999999999


Q ss_pred             EeCcccccccCCcccccC--------------CCCceeccceEEEecCCeEEEEee
Q psy13807         95 RGYNVMLGYYGEENKILE--------------NDEWFPSGDFFILHENGYGQVVGR  136 (204)
Q Consensus        95 ~~~~~~~~y~~~~~~~~~--------------~~~~~~TGD~~~~~~~g~~~~~GR  136 (204)
                      +|++++.|||++++.++.              .++||+|||+|+++ ||+++|.||
T Consensus       426 ~g~~v~~GY~~~pe~t~~~f~~~~~~~~~~~~~~~w~~TGDlg~~d-dG~l~~~GR  480 (480)
T 3t5a_A          426 HGDNVANGYWQKPDESERTFGGKIVTPSPGTPEGPWLRTGDSGFVT-DGKMFIIGR  480 (480)
T ss_dssp             ESTTSCCCBTTBHHHHHHHHCBCCSSCCTTCCCCCBEEEEEEEEEE-TTEEEECC-
T ss_pred             eCCccccccccCcchhHHHHhhhhccccCCCCCCCeeeccceeeEE-CCEEEEeCC
Confidence            999999999999887643              35699999999997 999999998

>3hgu_A EHPF; phenazine, antibiotic, biosynthetic protein; 1.95A {Pantoea agglomerans} PDB: 3hgv_A 3l2k_A*

Probab=99.51  E-value=1.3e-14  Score=116.74  Aligned_cols=127  Identities=15%  Similarity=0.123  Sum_probs=90.6

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHH-HHh-CCc---------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIR-DTF-GIK---------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~-~~~-g~~---------   70 (204)
                      +++.|+++++|.+.++|+++..|++......       ..++++|.+++||+++++++.+++. +.| ++.         
T Consensus       197 ~~~~i~~~~~t~l~~~Ps~~~~l~~~~~~~~-------~~~~~lr~i~~gGe~l~~~~~~~~~~~~~p~~~v~~~YG~TE  269 (369)
T 3hgu_A          197 VQNTLMNQDIRFLVTTPPVLRELLKRPEVVL-------QMKQSLAQITLGGTELNLDEIKFIASEILPDCEFSASYGSTS  269 (369)
T ss_dssp             HHHHHHHSCEEEEEECHHHHHHHTTCHHHHH-------HHHHHCSEEEEESSCCCHHHHHHHHHHTCTTSEEEEEEEEGG
T ss_pred             HHHHHHhCCCCEEEeCHHHHHHHHhhhhhhc-------cccCCeeEEEECCccCCHHHHHHHHHHhCCCcEEEcccCchh
Confidence            4559999999999999999999987643222       4568899999999999999999999 887 444         


Q ss_pred             ------------------------ceEEEEECC-CCCcCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEE
Q psy13807         71 ------------------------HLIVKVVDK-KGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFIL  125 (204)
Q Consensus        71 ------------------------~~~v~i~d~-~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~  125 (204)
                                              ++.++|+|+ +|+++|.|+.|||++++......+.           .|+|||++.+
T Consensus       270 ~~~~~~~~~~~~~G~~~~~~~~~~~~~v~ivD~~~g~~vp~G~~GEl~vt~l~~~~~l~-----------ry~tgD~~~~  338 (369)
T 3hgu_A          270 ALGVSRSLLITSESQQVIYDSFSPFITYDVVDSITAQTVEYGERGNVIVTHLSPWAFYP-----------RVAERDTAIR  338 (369)
T ss_dssp             GTEEEEECCBCTTCSSCEEECCTTTEEEEEECTTTCSBCCTTCEEEEEEEEEETTEEEE-----------EEEEEEEEEE
T ss_pred             hhcceeccccccCCCcccccCCCCCeEEEEECCCCCcCCCCCCceEEEEEEcCcccccc-----------cccCCceEEE
Confidence                                    467889998 7999999999999999853221121           2789999887


Q ss_pred             ecC--C-------eEEEEeeccceEEeCce
Q psy13807        126 HEN--G-------YGQVVGRIKDIIIRGGE  146 (204)
Q Consensus       126 ~~~--g-------~~~~~GR~dd~i~~~G~  146 (204)
                      .+.  |       .+..++|.++..++.|.
T Consensus       339 ~~~~~g~~~d~~~~v~~~~~~~~~~~i~gv  368 (369)
T 3hgu_A          339 LPGVSGFAGDRLADIEPLKISEGRKVIEGV  368 (369)
T ss_dssp             ECCSTTCSSCEEEEEEECC-----------
T ss_pred             ecCCCCCcCcccccceeccccCCCceeeec
Confidence            543  2       34556677777776663

>3lax_A Phenylacetate-coenzyme A ligase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 1.43A {Bacteroides vulgatus}

Probab=99.37  E-value=2.4e-12  Score=85.95  Aligned_cols=61  Identities=20%  Similarity=0.254  Sum_probs=55.3

Q ss_pred             eeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHH
Q psy13807        135 GRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQD  195 (204)
Q Consensus       135 GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~  195 (204)
                      .|.||+|+++|.|++|.+||++|.++|+|.++++++++++..++.+.++|+..++...+..
T Consensus         1 srADDmIiv~G~nv~P~eIE~vl~~~p~v~~~~vv~v~~~~~~~~~~~~V~~~~~~~~~~~   61 (109)
T 3lax_A            1 SNADDMIILKGVNIFPIQIETILLQFKELGSDYLITLETAESNDEMTVEVELSQLFTDDYG   61 (109)
T ss_dssp             CGGGSCEEETTEEECHHHHHHHHHTCTTEEEEEEEEEEEETTEEEEEEEEEECTTCCCCHH
T ss_pred             CCcCEEEEECCEEECHHHHHHHHHhCCCcccceEEEEeccccceeEEEEEEEeeccccccc
Confidence            3899999999999999999999999999999999999998888999999999887665543

>4b2g_A GH3-1 auxin conjugating enzyme; signaling protein, ignaling protein, adenylate, amino acid conjugation, plant growth; HET: V1N; 2.40A {Vitis vinifera}

Probab=98.28  E-value=4.4e-06  Score=70.83  Aligned_cols=103  Identities=17%  Similarity=0.190  Sum_probs=70.0

Q ss_pred             cCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEec----CCeEEEEeeccceEEeCceeeChHHHHHHHh
Q psy13807         83 IVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHE----NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQ  158 (204)
Q Consensus        83 ~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~  158 (204)
                      .|..|+.++|++++.+   |+|+           |++||+.++..    ...+.|.||.++++++.|.++++.+||+++.
T Consensus       392 eVe~G~~YelViTt~~---GL~R-----------Yr~GD~v~v~~f~~~~p~i~~~gR~~~~l~~~Geki~~~~v~~av~  457 (609)
T 4b2g_A          392 HVEVGKEYELVITTYA---GLYR-----------YRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDEAELQKAVD  457 (609)
T ss_dssp             GCCTTCEEEEEEECTT---SCCS-----------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHH
T ss_pred             HcCCCCeEEEehhhhh---hhhh-----------eecCCEEEEeecCCCCcEEEEEEecCCeEEccccCCCHHHHHHHHH
Confidence            4567888999997663   5554           89999999873    3679999999999999999999999999887


Q ss_pred             cC------CC--cceEEEEeeeCCCCCceEEEEEEeCC---CCCCCHHHHHHH
Q psy13807        159 TH------PD--VVEAQVYGVPDERLGEVVVANIELKP---GASLTQDDIKTY  200 (204)
Q Consensus       159 ~~------~~--V~~~~v~~~~~~~~~~~~~a~v~~~~---~~~~~~~~l~~~  200 (204)
                      ..      .+  |.|..+..-... ....-+.+.++..   ....+++.+.+.
T Consensus       458 ~a~~~l~~~g~~l~eft~~~d~~~-~p~Hyv~~wEl~~~~~~~~~~~~~l~~~  509 (609)
T 4b2g_A          458 NASKLLREVNTSVVEYTSFADTKT-IPGHYVIYWELLVKDSANSPSDELLGQC  509 (609)
T ss_dssp             HHHHGGGGTTEEEEEEEEEEECSS-SSCEEEEEEEEEESCGGGCCCHHHHHHH
T ss_pred             HHHHhhhccCCeEEEEEEecCCCC-CCCcEEEEEEEecccccCCCCHHHHHHH
Confidence            32      23  456666532222 2224444455531   123445555543

>4eql_A 4-substituted benzoates-glutamate ligase GH3.12; firefly luciferase family, acyl adenylase, amino acid conjug ligase; HET: AMP SAL; 1.80A {Arabidopsis thaliana} PDB: 4epm_A* 4eq4_A* 4ewv_A*

Probab=98.23  E-value=6.4e-06  Score=69.59  Aligned_cols=63  Identities=14%  Similarity=0.216  Sum_probs=52.0

Q ss_pred             CCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEec----CCeEEEEeeccceEEeCceeeChHHHHHHHhc
Q psy13807         84 VPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHE----NGYGQVVGRIKDIIIRGGENIIPKEIEYVLQT  159 (204)
Q Consensus        84 ~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~----~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~  159 (204)
                      |..|+.++|++++.+   |.|+           |++||+.+...    ..++.|.||.++++++.|++++..+||+++.+
T Consensus       381 Ve~G~~YelViTt~~---GL~R-----------Yr~GD~v~v~~f~~~~p~i~f~gR~~~~l~~~Gekl~~~~v~~al~~  446 (581)
T 4eql_A          381 VKLGCTYEPVVTNFA---GLYR-----------MRVGDIVLVTGFYNNAPQFKFVRRENVVLSIDSDKTNEEDLFKAVSQ  446 (581)
T ss_dssp             CCTTCEEEEEEECSS---SCCS-----------EECCEEEEEEEEETTEEEEEEEEETTEEECSSSCCEEHHHHHHHHHH
T ss_pred             cCCCceEEEEEeecc---ceee-----------EEcCCEEEEcccCCCCcEEEEEEecCCEEEeeeeECCHHHHHHHHHH
Confidence            346777888887763   3443           89999999875    35799999999999999999999999998885


Q ss_pred             C
Q psy13807        160 H  160 (204)
Q Consensus       160 ~  160 (204)
                      .
T Consensus       447 a  447 (581)
T 4eql_A          447 A  447 (581)
T ss_dssp             C
T ss_pred             H
Confidence            4

>4epl_A Jasmonic acid-amido synthetase JAR1; ANL adenylating enzyme, acyl acid-amido synthetase, adenylat ligase; HET: JAI; 2.01A {Arabidopsis thaliana}

Probab=98.11  E-value=1.6e-05  Score=67.12  Aligned_cols=101  Identities=15%  Similarity=0.143  Sum_probs=69.5

Q ss_pred             cCCCCCeeEEEEEeCcccccccCCcccccCCCCceeccceEEEecC----CeEEEEeeccceEEeCceeeChHHHHHHHh
Q psy13807         83 IVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFPSGDFFILHEN----GYGQVVGRIKDIIIRGGENIIPKEIEYVLQ  158 (204)
Q Consensus        83 ~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~~~~~~~TGD~~~~~~~----g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~  158 (204)
                      .|..|+.++|++++.+   |.|+           |++||+.+...-    ..+.|.||.++++++.|.+++..+|++++.
T Consensus       387 eve~G~~YelviTt~~---GL~R-----------Yr~GD~v~v~g~~~~~p~~~~~gR~~~~l~~~Ge~~~~~~v~~al~  452 (581)
T 4epl_A          387 QVKIGEEYEVVITNYA---GLYR-----------YRLGDVVKVIGFYNNTPQLKFICRRNLILSINIDKNTERDLQLSVE  452 (581)
T ss_dssp             GCCTTCEEEEEEESTT---SCSS-----------EEEEEEEEEEEEETTEEEEEEEEETTCCBCSSSCCBCHHHHHHHHH
T ss_pred             HcCCCCeEEEEEeecc---ceee-----------EEcCCEEEEecccCCCcEEEEEeecCCeEEeeeeECCHHHHHHHHH
Confidence            4557788888888764   4443           899999998642    469999999999999999999999999887


Q ss_pred             cC--------CCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHH
Q psy13807        159 TH--------PDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTY  200 (204)
Q Consensus       159 ~~--------~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~  200 (204)
                      ..        -.|.|..+.+-... ....-+.+.++..  ..+.+.+.+.
T Consensus       453 ~a~~~l~~~~~~l~eft~~~d~~~-~p~hyv~~wE~~~--~~~~~~l~~~  499 (581)
T 4epl_A          453 SAAKRLSEEKIEVIDFSSYIDVST-DPGHYAIFWEISG--ETNEDVLQDC  499 (581)
T ss_dssp             HHHHHHHTTTCCEEEEEEEEECSS-SSCEEEEEEEESS--CCCHHHHHHH
T ss_pred             HHHHhhcccCCeEEEEEEecCCCC-CCCcEEEEEeecC--CCCHHHHHHH
Confidence            42        24667766653222 2234444557642  2444444443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	204
d1pg4a_	643	e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en	7e-44
d1lcia_	541	e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali	2e-38
d1v25a_	534	e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0	2e-36
d1ry2a_	640	e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast	1e-33
d1amua_	514	e.23.1.1 (A:) Phenylalanine activating domain of g	2e-32
d1mdba_	536	e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {B	4e-32
d3cw9a1	503	e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alc	7e-32

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

 Score =  152 bits (385), Expect = 7e-44
 Identities = 44/250 (17%), Positives = 84/250 (33%), Gaps = 52/250 (20%)

Query: 2   ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFN 61
           + + + K +  +LY  PT    L++      E       + SS  I  + G P +P  + 
Sbjct: 338 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIEGT-----DRSSLRILGSVGEPINPEAWE 392

Query: 62  KIRDTFGIKHLI-------------------------------------VKVVDKKGNIV 84
                 G +                                          +VD +G+  
Sbjct: 393 WYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQ 452

Query: 85  PMGMCGEVCYRGY--NVMLGYYGEENKILEN-----DEWFPSGDFFILHENGYGQVVGRI 137
                G +             +G+  +  +         + SGD     E+GY  + GR+
Sbjct: 453 EGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMYFSGDGARRDEDGYYWITGRV 512

Query: 138 KDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQD-- 195
            D++   G  +   EIE  L  HP + EA V G+P    G+ + A + L  G   + +  
Sbjct: 513 DDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELY 572

Query: 196 -DIKTYCKGK 204
            +++ + + +
Sbjct: 573 AEVRNWVRKE 582

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

 Score =  136 bits (343), Expect = 2e-38
 Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 4/135 (2%)

Query: 74  VKVVDK-KGNIVPMGMCGEVCYRGYNVMLGYYGEE---NKILENDEWFPSGDFFILHENG 129
            KVVD   G  + +   GE+C RG  +M GY       N +++ D W  SGD     E+ 
Sbjct: 368 AKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAYWDEDE 427

Query: 130 YGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPG 189
           +  +V R+K +I   G  + P E+E +L  HP++ +A V G+PD+  GE+  A + L+ G
Sbjct: 428 HFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHG 487

Query: 190 ASLTQDDIKTYCKGK 204
            ++T+ +I  Y   +
Sbjct: 488 KTMTEKEIVDYVASQ 502

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

 Score =  131 bits (329), Expect = 2e-36
 Identities = 53/247 (21%), Positives = 90/247 (36%), Gaps = 54/247 (21%)

Query: 5   HIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNK-- 62
               E  T   G PT+++ L        + + +    L +    +  G+    +L  +  
Sbjct: 255 LFDGEGVTFTAGVPTVWLALA-------DYLESTGHRLKTLRRLVVGGSAAPRSLIARFE 307

Query: 63  -----IRDTFG-----------------------------------IKHLIVKVVDKKGN 82
                +R  +G                                   I  + ++V D++G 
Sbjct: 308 RMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGR 367

Query: 83  IVPM--GMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFILHENGYGQVVGRI 137
            VP      GEV  +G  +  GYYG E         D +F +GD  +  E GY ++  R+
Sbjct: 368 PVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTPDGFFRTGDIAVWDEEGYVEIKDRL 427

Query: 138 KDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDI 197
           KD+I  GGE I   ++E  L  HP V EA V  +P  +  E  +A +  +      ++  
Sbjct: 428 KDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTPEELN 487

Query: 198 KTYCKGK 204
           +   K  
Sbjct: 488 EHLLKAG 494

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  123 bits (310), Expect = 1e-33
 Identities = 40/235 (17%), Positives = 74/235 (31%), Gaps = 52/235 (22%)

Query: 6   IVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRD 65
           I + K T  Y  PT    L  +     E        L S     + G P +  ++    +
Sbjct: 329 IDEHKVTQFYVAPTALRLLKRAGDSYIE-----NHSLKSLRCLGSVGEPIAAEVWEWYSE 383

Query: 66  TFG--------------------------------------IKHLIVKVVDKKGN--IVP 85
             G                                         +   V+D      +  
Sbjct: 384 KIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNT 443

Query: 86  MGMCGEVCYRGY--NVMLGYYGEENKILEN-----DEWFPSGDFFILHENGYGQVVGRIK 138
               G +  +    +     +   ++ L+        ++ +GD     ++GY  ++GR+ 
Sbjct: 444 SHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYPGYYFTGDGAAKDKDGYIWILGRVD 503

Query: 139 DIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT 193
           D++   G  +   EIE  +   P V E  V G  D+  G+ V A + LK  +S +
Sbjct: 504 DVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSSWS 558

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]} Length = 514

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

 Score =  119 bits (300), Expect = 2e-32
 Identities = 27/145 (18%), Positives = 61/145 (42%), Gaps = 11/145 (7%)

Query: 69  IKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGE---------ENKILENDEWFPS 119
           I++  + +VD+   +  +G  GE+C  G  +  GY+           +N  +  ++ + +
Sbjct: 336 IQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKT 395

Query: 120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEV 179
           GD      +G  + +GRI + +   G  +  +E+E +L  H  + E  V    D +    
Sbjct: 396 GDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPY 455

Query: 180 VVANIELKPGASLTQDDIKTYCKGK 204
           + A    +    L  + ++ +   +
Sbjct: 456 LCAYFVSEKHIPL--EQLRQFSSEE 478

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]} Length = 536

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

 Score =  119 bits (298), Expect = 4e-32
 Identities = 41/134 (30%), Positives = 60/134 (44%), Gaps = 4/134 (2%)

Query: 74  VKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILENDEWFP---SGDFFILHENGY 130
            +V D     V  G  G +  RG   + GYY  E     +        +GD   L  +GY
Sbjct: 363 SRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVRLTRDGY 422

Query: 131 GQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGA 190
             V GR KD I RGGE +  +E+E  L  HP V +A +  +PD+ LGE     I  +  A
Sbjct: 423 IVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDEA 482

Query: 191 SLTQDDIKTYCKGK 204
                ++K + + +
Sbjct: 483 -PKAAELKAFLRER 495

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]} Length = 503

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

 Score =  118 bits (295), Expect = 7e-32
 Identities = 45/146 (30%), Positives = 71/146 (48%), Gaps = 3/146 (2%)

Query: 62  KIRDTFGIKHLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYG---EENKILENDEWFP 118
           ++   F  +  IV++      IV  G  GE+     +     Y    +       D W+ 
Sbjct: 323 EMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYR 382

Query: 119 SGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGE 178
           + D  +    G  +++GR+ D+II GGENI P EIE VL T P V E  V G+ D+R G+
Sbjct: 383 TSDVAVWTPEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQ 442

Query: 179 VVVANIELKPGASLTQDDIKTYCKGK 204
            V A +  + G +L+ D + T+C+  
Sbjct: 443 SVTACVVPRLGETLSADALDTFCRSS 468

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	204
d1pg4a_	643	Acetyl-CoA synthetase {Salmonella enterica [TaxId:	100.0
d1lcia_	541	Luciferase {Firefly (Photinus pyralis) [TaxId: 705	100.0
d1ry2a_	640	Acetyl-CoA synthetase {Baker's yeast (Saccharomyce	100.0
d1v25a_	534	Long chain fatty acid-CoA ligase TT0168 {Thermus t	100.0
d1mdba_	536	Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtil	100.0
d1amua_	514	Phenylalanine activating domain of gramicidin synt	100.0
d3cw9a1	503	4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId	99.97

>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]

Probab=100.00  E-value=1.5e-38  Score=271.71  Aligned_cols=197  Identities=22%  Similarity=0.375  Sum_probs=176.2

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      ++++++++++|+++++|++++.|++.......     ..++++||.++++|+++++++.+++.+.+|.+           
T Consensus       338 ~~~~i~~~~vt~~~~~P~~l~~l~~~~~~~~~-----~~dl~sLr~i~~~G~pl~~~~~~~~~~~~g~~~~~i~~~yG~T  412 (643)
T d1pg4a_         338 MCQVVDKHQVNILYTAPTAIRALMAEGDKAIE-----GTDRSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQT  412 (643)
T ss_dssp             HHHHHHHHTCSEEEECHHHHHHHHTTGGGGTT-----TCCCTTCCEEEEESSCCCHHHHHHHHHHTTTTCSCEEEEBCCG
T ss_pred             HHHHHHHHCCcEEEehHHHHHHHHhCcchhcc-----ccCCCceEEEEEEeCCCCHHHHHHHHHHhCCCCceEEEeechh
Confidence            68999999999999999999999887543220     15789999999999999999999999987532           


Q ss_pred             --------------------------ceEEEEECCCCCcCCCCCeeEEEEEe--CcccccccCCcccccC-----CCCce
Q psy13807         71 --------------------------HLIVKVVDKKGNIVPMGMCGEVCYRG--YNVMLGYYGEENKILE-----NDEWF  117 (204)
Q Consensus        71 --------------------------~~~v~i~d~~g~~~~~~~~Gel~v~~--~~~~~~y~~~~~~~~~-----~~~~~  117 (204)
                                                ++.++++|++|++++.|+.|||++++  |+++.+||++++.+..     .+|||
T Consensus       413 E~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~ivd~~g~~~~~g~~Gel~v~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~  492 (643)
T d1pg4a_         413 ETGGFMITPLPGAIELKAGSATRPFFGVQPALVDNEGHPQEGATEGNLVITDSWPGQARTLFGDHERFEQTYFSTFKNMY  492 (643)
T ss_dssp             GGSSCSBCCCTTTCCBCTTCCBSBCTTCCEEEECTTCCBCCSSEEEEEEECSCCTTCCCEETTCHHHHHHHHHSSSTTSE
T ss_pred             hccceEEecCCCccCCCCCccccccCCCEEEEECCCCCCCCCCceEEEEEecCCCcccccccCChhhchhhhcccCCCeE
Confidence                                      78899999999999999999999998  4788999999876543     68999


Q ss_pred             eccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHH--
Q psy13807        118 PSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQD--  195 (204)
Q Consensus       118 ~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~--  195 (204)
                      +|||++++|+||+++++||+||+||++|++|+|.|||++|.+||+|.+|+|++.+++..++.++|||++.++...+.+  
T Consensus       493 ~TGDl~~~d~dG~l~i~GR~dd~ik~~G~ri~p~eIE~~l~~~p~V~eaaVvg~~d~~~ge~~~a~Vv~~~~~~~~~~~~  572 (643)
T d1pg4a_         493 FSGDGARRDEDGYYWITGRVDDVLNVSGHRLGTAEIESALVAHPKIAEAAVVGIPHAIKGQAIYAYVTLNHGEEPSPELY  572 (643)
T ss_dssp             EEEEEEEECTTSCEEEEEESSSEEEETTEEEEHHHHHHHHHHSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHH
T ss_pred             EcCCEEEECCCceEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEECCCCCCCHHHH
Confidence            999999999999999999999999999999999999999999999999999999999889999999999998777753  


Q ss_pred             -HHHHHHhc
Q psy13807        196 -DIKTYCKG  203 (204)
Q Consensus       196 -~l~~~l~~  203 (204)
                       +|+++|++
T Consensus       573 ~~i~~~~~~  581 (643)
T d1pg4a_         573 AEVRNWVRK  581 (643)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence             67777765

>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]

Probab=100.00  E-value=6e-36  Score=249.59  Aligned_cols=195  Identities=28%  Similarity=0.438  Sum_probs=174.8

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      .+..+.++++|.+.++|+++..++.......       .++++++.+++||+++++.+.+++.+.++..           
T Consensus       270 ~~~~~~~~~~t~~~~~p~~~~~~~~~~~~~~-------~~~~~l~~v~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~TE~  342 (541)
T d1lcia_         270 FLRSLQDYKIQSALLVPTLFSFFAKSTLIDK-------YDLSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTET  342 (541)
T ss_dssp             HHHHHHHTTCSEEECCHHHHHHHHHCSCGGG-------SCCTTCCEEECTTCCCCHHHHHHHHHHTTCSCCBCEECCGGG
T ss_pred             hHHHHhhhhccccccCccccccccccccccc-------cccccceEEEecccccccccccccccccCCceeeecCCcccc
Confidence            4678899999999999999999998776665       6789999999999999999999999987754           


Q ss_pred             ----------------------ceEEEEECCC-CCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEE
Q psy13807         71 ----------------------HLIVKVVDKK-GNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFI  124 (204)
Q Consensus        71 ----------------------~~~v~i~d~~-g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~  124 (204)
                                            ++.++++|++ |++++.|+.|||+++|++++.||+++++.+..   .++||+|||+++
T Consensus       343 ~~~~~~~~~~~~~~~svG~p~~~~~~~i~d~d~~~~~~~g~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~TGDl~~  422 (541)
T d1lcia_         343 TSAILITPEGDDKPGAVGKVVPFFEAKVVDLDTGKTLGVNQRGELCVRGPMIMSGYVNNPEATNALIDKDGWLHSGDIAY  422 (541)
T ss_dssp             SSCSEECCCC---CCCCBEECTTCEEEEECTTTCCBCCTTCCEEEEEESTTSCSEETTBHHHHHHHBCTTSCEEEEEEEE
T ss_pred             CceEEecCcccCCCCccccccCCCEEEEEECCCCcCCCCCCeEEEEEccCccCCeeCCChhhhhhcccCCccccCCCeeE
Confidence                                  8899999965 89999999999999999999999998776654   689999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhc
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKG  203 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~  203 (204)
                      ++++|++++.||.||+||++|++|+|.+||++|.++|+|.+|+|++++++..++.++|+|++.++...+.++|+++|++
T Consensus       423 ~~~~G~~~~~GR~~d~i~~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~~  501 (541)
T d1lcia_         423 WDEDEHFFIVDRLKSLIKYKGYQVAPAELESILLQHPNIFDAGVAGLPDDDAGELPAAVVVLEHGKTMTEKEIVDYVAS  501 (541)
T ss_dssp             ECTTCCEEEC-----CEEETTEEECHHHHHHHHHTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHHH
T ss_pred             EcCCeEEEEeeeecCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888999999999998888999999998875

>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.5e-36  Score=254.69  Aligned_cols=185  Identities=22%  Similarity=0.276  Sum_probs=160.9

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      ++++++++++|.+.++|++++.|.+.......     ..++++||.+++||+++++++.+++.+.+|..           
T Consensus       325 ~~~~i~~~~vt~~~~~P~~~~~l~~~~~~~~~-----~~~l~sLr~v~~gG~~l~~~~~~~~~~~~g~~~~~i~~~yg~t  399 (640)
T d1ry2a_         325 YWDIIDEHKVTQFYVAPTALRLLKRAGDSYIE-----NHSLKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQT  399 (640)
T ss_dssp             HHHHHHHTTCSEEEECHHHHHHHTTSCTTSSS-----SCCCTTCCEEEECSSCCCHHHHHHHHHTTSCSSSCEEECBCCT
T ss_pred             HHHHHHHhCccEEEcChHHHHHHHhccccccc-----cCCCCceEEEEEecccCcHHHHHHHHHhcCCCcceEEeeeccc
Confidence            68999999999999999999998876543221     16799999999999999999999999988743           


Q ss_pred             ---------------------------ceEEEEECCCCCc--CCCCCeeEEEEEe--CcccccccCCcccccC-----CC
Q psy13807         71 ---------------------------HLIVKVVDKKGNI--VPMGMCGEVCYRG--YNVMLGYYGEENKILE-----ND  114 (204)
Q Consensus        71 ---------------------------~~~v~i~d~~g~~--~~~~~~Gel~v~~--~~~~~~y~~~~~~~~~-----~~  114 (204)
                                                 ++.++++|+++..  .+.+..|+|++++  |+++.+||++++.+..     .+
T Consensus       400 e~~~~~~~~~~~~~~~~~~gs~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~i~~~~p~~~~gy~~~~e~t~~~~~~~~~  479 (640)
T d1ry2a_         400 ESGSHLVTPLAGGVTPMKPGSASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVKAAWPSFARTIWKNHDRYLDTYLNPYP  479 (640)
T ss_dssp             TTCSCSEECCTTTCCCCCTTCCCEECTTCCEEEECSSSTTCEECSSCEEEEEESSCCTTSCCEETTCHHHHHHHHTSSST
T ss_pred             ccccccccccCCCcCCCCCcccccccCCceEEEEeCCCCcccCCCCceEEEEEEecCCCcccccccCHHHHHhhhccCCC
Confidence                                       6788999987543  3456679999998  5899999999987764     56


Q ss_pred             CceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCC
Q psy13807        115 EWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGAS  191 (204)
Q Consensus       115 ~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~  191 (204)
                      |||+|||+|++|+||+++|+||+||+||++|++|+|.+||++|.+||+|.+|+|++++++..++.++|||+++++..
T Consensus       480 gw~~TGDlg~~d~dG~l~i~GR~dd~Ik~~G~~I~p~eIE~~l~~~p~V~~a~Vvg~~d~~~ge~~~a~Vv~~~~~~  556 (640)
T d1ry2a_         480 GYYFTGDGAAKDKDGYIWILGRVDDVVNVSGHRLSTAEIEAAIIEDPIVAECAVVGFNDDLTGQAVAAFVVLKNKSS  556 (640)
T ss_dssp             TSEEEEEEEEECTTCCEEECSCTTSCBCSSSCCBCHHHHHHHHHSSTTEEEEEEECCCCCTTSCCCEEEEEEC----
T ss_pred             CeEEcCCceeECCCCCEEEEEcCCCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEEcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999989999999999987644

>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1e-35  Score=248.40  Aligned_cols=194  Identities=26%  Similarity=0.428  Sum_probs=150.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      ++++++++++|.+.++|+++..++.......       ..+++||.+++||+++++++.+++.+. +..           
T Consensus       252 ~~~~~~~~~vt~~~~~p~~~~~~~~~~~~~~-------~~~~~lr~~~~gG~~~~~~~~~~~~~~-~~~i~~~yG~te~~  323 (534)
T d1v25a_         252 LVELFDGEGVTFTAGVPTVWLALADYLESTG-------HRLKTLRRLVVGGSAAPRSLIARFERM-GVEVRQGYGLTETS  323 (534)
T ss_dssp             HHHHHHHTTCCEEEECHHHHHHHHHHHHHHT-------CCCSSCCEEEECSSCCCHHHHHHHHHT-TCEEEEEEECGGGS
T ss_pred             cchhhhhccccccccCchhhhhhhhhhcccc-------ccccceeEEEEecCCCCHHHHHHHHHh-CCeeeeeccccccc
Confidence            5688999999999999999999988766555       678999999999999999999998754 332           


Q ss_pred             --------------------------------ceEEEEECCCCCcCCC--CCeeEEEEEeCcccccccCCcccccC---C
Q psy13807         71 --------------------------------HLIVKVVDKKGNIVPM--GMCGEVCYRGYNVMLGYYGEENKILE---N  113 (204)
Q Consensus        71 --------------------------------~~~v~i~d~~g~~~~~--~~~Gel~v~~~~~~~~y~~~~~~~~~---~  113 (204)
                                                      ++.++++|++|++++.  +..|||+++|++++.||+++++.+..   .
T Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~~~~~~Gel~v~g~~v~~gY~~~~~~t~~~~~~  403 (534)
T d1v25a_         324 PVVVQNFVKSHLESLSEEEKLTLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLKGPWITGGYYGNEEATRSALTP  403 (534)
T ss_dssp             SEEEECCCCGGGTTSCHHHHHHHHTSCBEECTTCEEEEECTTSCBCCSSSCCCEEEEEESTTSBSSCBTCHHHHHTTBCT
T ss_pred             cceeecccCccccccCccccccccccceeccCCcEEEEECCCCCCCCCCCCeeEEEEEcCCcccceecCChhhhhhhccc
Confidence                                            6789999999999876  67899999999999999999887765   7


Q ss_pred             CCceeccceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCC
Q psy13807        114 DEWFPSGDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLT  193 (204)
Q Consensus       114 ~~~~~TGD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~  193 (204)
                      +|||+|||+|++++||.+++.||+||+||++|.+|+|.+||++|.++|+|.+++|++++++..++.++|+|++.++....
T Consensus       404 dg~~~TGDlg~~~~~G~l~~~GR~~~~i~~~G~~v~~~eIE~~l~~~~~V~~a~v~~~~~~~~~~~l~a~vv~~~~~~~~  483 (534)
T d1v25a_         404 DGFFRTGDIAVWDEEGYVEIKDRLKDLIKSGGEWISSVDLENALMGHPKVKEAAVVAIPHPKWQERPLAVVVPRGEKPTP  483 (534)
T ss_dssp             TSCEEEEEEEEECTTCCEEEEEESSCEEEETTEEEEHHHHHCC----------CEEEEECSSSSEEEEECC---------
T ss_pred             CCCCccCceeEECCCccEEEecccccEEEECCEEECHHHHHHHHHhCCCcceEEEEEEECCCCCeEEEEEEEeCCCCCCH
Confidence            89999999999999999999999999999999999999999999999999999999999988899999999987654444


Q ss_pred             HHHHHHHHhc
Q psy13807        194 QDDIKTYCKG  203 (204)
Q Consensus       194 ~~~l~~~l~~  203 (204)
                      ++.++.++++
T Consensus       484 ~~~~~~~~~~  493 (534)
T d1v25a_         484 EELNEHLLKA  493 (534)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHh
Confidence            4444444543

>d1mdba_ e.23.1.1 (A:) Dihydroxybenzoate-AMP ligase DhbE {Bacillus subtilis [TaxId: 1423]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Dihydroxybenzoate-AMP ligase DhbE
species: Bacillus subtilis [TaxId: 1423]

Probab=100.00  E-value=2.2e-32  Score=227.52  Aligned_cols=195  Identities=28%  Similarity=0.404  Sum_probs=176.5

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      ++..+++++++.+..+|+.+..+........       ..+++++.+++||+++++.+.+++.+.+|..           
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  336 (536)
T d1mdba_         264 AFPLIEREKVTITALVPPLAMVWMDAASSRR-------DDLSSLQVLQVGGAKFSAEAARRVKAVFGCTLQQVFGMAEGL  336 (536)
T ss_dssp             HHHHHHHHTCSEEEECHHHHHHHHHHHHHCC-------CCCTTCCEEEEESSCCCHHHHTTHHHHTCSEEEEEEECTTSC
T ss_pred             HHHHHhhhccccccccchhhhhhhhhccccc-------cccCcceeEEEeccccccccccchhhccCceeeecccccccc
Confidence            5788999999999999999999888766555       6789999999999999999999999998875           


Q ss_pred             -----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---CCCceeccceEE
Q psy13807         71 -----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---NDEWFPSGDFFI  124 (204)
Q Consensus        71 -----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---~~~~~~TGD~~~  124 (204)
                                             ...+.+.+++|++++.++.|||+++|+.++.||++++..+..   .++||+|||+++
T Consensus       337 ~~~~~~~~~~~~~~~~~g~p~~~~~~~~v~~~~g~~~~~~~~Gel~v~g~~~~~gY~~~~~~~~~~~~~~~~~~tGD~~~  416 (536)
T d1mdba_         337 VNYTRLDDPEEIIVNTQGKPMSPYDESRVWDDHDRDVKPGETGHLLTRGPYTIRGYYKAEEHNAASFTEDGFYRTGDIVR  416 (536)
T ss_dssp             EEECCTTSCHHHHHHCCCEESSTTCEEEEECTTSCBCCTTCCEEEEEECTTSCSSCTTCHHHHHHHBCTTSCEEEEEEEE
T ss_pred             ccccccccccccccCCcccCCCCcceEEEEcCCCCeecccccceeecCCCccccccccccccccccccccCccccCcccc
Confidence                                   456677788899999999999999999999999998877655   689999999999


Q ss_pred             EecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHhcC
Q psy13807        125 LHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCKGK  204 (204)
Q Consensus       125 ~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~~~  204 (204)
                      +++||++++.||+||+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++|+|++.++ ..+.++|+++|++|
T Consensus       417 ~~~dG~l~~~GR~~d~i~~~G~~i~p~~IE~~l~~~p~V~~a~vvg~~~~~~g~~~~a~v~~~~~-~~~~~~l~~~l~~~  495 (536)
T d1mdba_         417 LTRDGYIVVEGRAKDQINRGGEKVAAEEVENHLLAHPAVHDAAMVSMPDQFLGERSCVFIIPRDE-APKAAELKAFLRER  495 (536)
T ss_dssp             ECTTSCEEEEEEGGGCEECSSCEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEESSS-CCCHHHHHHHHHHT
T ss_pred             ccCCCceecCCCcceEEEECCEEECHHHHHHHHHhCCCccEEEEEEEEcCCCCeEEEEEEEECCC-CCCHHHHHHHHHhc
Confidence            99999999999999999999999999999999999999999999999988888899999998764 56788899988753

>d1amua_ e.23.1.1 (A:) Phenylalanine activating domain of gramicidin synthetase 1 {Bacillus brevis [TaxId: 1393]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Phenylalanine activating domain of gramicidin synthetase 1
species: Bacillus brevis [TaxId: 1393]

Probab=100.00  E-value=3.5e-32  Score=225.65  Aligned_cols=187  Identities=22%  Similarity=0.344  Sum_probs=164.1

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHh------CCc-----
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTF------GIK-----   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~------g~~-----   70 (204)
                      +++.+..+.++.+..+|......      ..       .++++++.++++|+++++++..++.+.+      |.+     
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~------~~-------~~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~yG~tE~~~~  315 (514)
T d1amua_         249 FEQYINQKEITVITLPPTYVVHL------DP-------ERILSIQTLITAGSATSPSLVNKWKEKVTYINAYGPTETTIC  315 (514)
T ss_dssp             HHHHHHHTTCCEEEECHHHHTTS------CT-------TTCCSCSEEEEESSCCCHHHHHHHTTTSEEEEEECCGGGSSC
T ss_pred             hhhhhhhhhcccccceeeecccc------cc-------cccccccEEEEecccCCHHHhhhhccceeEEEeeccccCcee
Confidence            46788899999999999865421      12       5689999999999999999998886542      222     


Q ss_pred             ----------------------ceEEEEECCCCCcCCCCCeeEEEEEeCcccccccCCcccccC---------CCCceec
Q psy13807         71 ----------------------HLIVKVVDKKGNIVPMGMCGEVCYRGYNVMLGYYGEENKILE---------NDEWFPS  119 (204)
Q Consensus        71 ----------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~~~~~~y~~~~~~~~~---------~~~~~~T  119 (204)
                                            +..+.+.|+++++++.|+.|||++++|.++.||++++..+..         .++||+|
T Consensus       316 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~g~~GEl~v~~~~~~~gY~~~~~~~~~~~~~~~~~~~~~~~~T  395 (514)
T d1amua_         316 ATTWVATKETIGHSVPIGAPIQNTQIYIVDENLQLKSVGEAGELCIGGEGLARGYWKRPELTSQKFVDNPFVPGEKLYKT  395 (514)
T ss_dssp             SEEEECCSSCCCSSCCCBEECTTEEEEEECTTSCBCCTTCEEEEEEEETTCCCEETTCHHHHHHHEEECSSSTTSEEEEE
T ss_pred             eeeccccccccCcccccccceeeeeEeeecccceecCCCCeeEEEEccCcccccccccccccceeeEeccccCCCceEEE
Confidence                                  688899999999999999999999999999999998875432         4789999


Q ss_pred             cceEEEecCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHH
Q psy13807        120 GDFFILHENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKT  199 (204)
Q Consensus       120 GD~~~~~~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~  199 (204)
                      ||+|++|+||++++.||++|+||++|++|+|.+||++|.++|+|.+++|++.+++..++.++|+|+++++  .+.++|++
T Consensus       396 GD~g~~d~~G~l~i~GR~~d~i~~~G~~i~p~~IE~~l~~~~~V~~~~V~~~~~~~~g~~~~a~v~~~~~--~~~~~l~~  473 (514)
T d1amua_         396 GDQARWLSDGNIEYLGRIDNQVKIRGHRVELEEVESILLKHMYISETAVSVHKDHQEQPYLCAYFVSEKH--IPLEQLRQ  473 (514)
T ss_dssp             EEEEEECTTSCEEEEEEGGGEEEETTEEEEHHHHHHHHTTSTTEEEEEEEEEECTTSCEEEEEEEEESSC--CCHHHHHH
T ss_pred             CCEEEECCCCcEEEEecccCEEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCEEEEEEEEcCCC--CCHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998899999999998765  67888998


Q ss_pred             HHhc
Q psy13807        200 YCKG  203 (204)
Q Consensus       200 ~l~~  203 (204)
                      ++++
T Consensus       474 ~~~~  477 (514)
T d1amua_         474 FSSE  477 (514)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8875

>d3cw9a1 e.23.1.1 (A:1-503) 4-chlorobenzoyl CoA ligase {Alcaligenes sp. [TaxId: 512]}

class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: 4-chlorobenzoyl CoA ligase
species: Alcaligenes sp. [TaxId: 512]

Probab=99.97  E-value=5.2e-30  Score=210.71  Aligned_cols=196  Identities=30%  Similarity=0.484  Sum_probs=167.3

Q ss_pred             HhHHHHHcCccEEEecHHHHHHHHhccCCCCCCCcccccCCCCceEEEEeCCCCCHHHHHHHHHHhCCc-----------
Q psy13807          2 ISRHIVKEKCTVLYGTPTMYVDLISSIQPLTEEMPNIAEELSSPVIALTAGAPCSPTLFNKIRDTFGIK-----------   70 (204)
Q Consensus         2 ~~~~i~~~~~t~~~~~P~~~~~l~~~~~~~~~~~~~~~~~l~~l~~~~~~G~~~~~~~~~~~~~~~g~~-----------   70 (204)
                      ++.++.+++++.+..+|+.+..+.........     ...+++||.+++||+++++++..++.+.++..           
T Consensus       236 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~yg~~e~~  310 (503)
T d3cw9a1         236 ALQLVQQEQVTSLFATPTHLDALAAAAAHAGS-----SLKLDSLRHVTFAGATMPDAVLETVHQHLPGEKVNIYGTTEAM  310 (503)
T ss_dssp             HHHHHHHHTCCEEEECHHHHHHHHHHHHHTCT-----TCCCTTCCEEEECSSCCCHHHHHHHHHHCCSEEEEEEEETTTE
T ss_pred             hhhhhhhceeeccccccccccccccccccccc-----cccccceEEEEeccccccccccccccccccccccccccccccc
Confidence            56789999999999999999987765432221     15678999999999999999999999887765           


Q ss_pred             ---------------------ceEEEEECCCCCcCCCCCeeEEEEEeC-cccccccCCcccccC--CCCceeccceEEEe
Q psy13807         71 ---------------------HLIVKVVDKKGNIVPMGMCGEVCYRGY-NVMLGYYGEENKILE--NDEWFPSGDFFILH  126 (204)
Q Consensus        71 ---------------------~~~v~i~d~~g~~~~~~~~Gel~v~~~-~~~~~y~~~~~~~~~--~~~~~~TGD~~~~~  126 (204)
                                           ...+.+.+..++.++.|+.|++.+.+. ....+|+++++.+..  .+|||+|||+|+++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~t~~~~~~g~~~TgD~g~~~  390 (503)
T d3cw9a1         311 NSLYMRQPKTGTEMAPGFFSEVRIVRIGGGVDEIVANGEEGELIVAASDSAFVGYLNQPQATAEKLQDGWYRTSDVAVWT  390 (503)
T ss_dssp             EEEEEESCSSSSEEBCCTTCCEEEECTTSCTTCBCCTTCCEEEEEECCTTSCCCBTTCHHHHHHHEETTEEEEEEEEEEC
T ss_pred             eeeeeccccccccccccccccceeeeeecccCcccCCCccccccccccccccccccCChhhhHHHhcCCceecccccccc
Confidence                                 222233445578889999998888765 556678888776655  68999999999999


Q ss_pred             cCCeEEEEeeccceEEeCceeeChHHHHHHHhcCCCcceEEEEeeeCCCCCceEEEEEEeCCCCCCCHHHHHHHHh
Q psy13807        127 ENGYGQVVGRIKDIIIRGGENIIPKEIEYVLQTHPDVVEAQVYGVPDERLGEVVVANIELKPGASLTQDDIKTYCK  202 (204)
Q Consensus       127 ~~g~~~~~GR~dd~i~~~G~~v~~~~ie~~l~~~~~V~~~~v~~~~~~~~~~~~~a~v~~~~~~~~~~~~l~~~l~  202 (204)
                      +||.++++||+||+||++|++|+|.+||++|.++|+|.+|+|++.+++..++.++|+|++.++...+.++++++++
T Consensus       391 ~dG~l~~~GR~~d~ik~~G~~v~~~~IE~~l~~~p~V~~~~v~~~~~~~~g~~~~a~v~~~~~~~~~~~~l~~~~~  466 (503)
T d3cw9a1         391 PEGTVRILGRVDDMIISGGENIHPSEIERVLGTAPGVTEVVVIGLADQRWGQSVTACVVPRLGETLSADALDTFCR  466 (503)
T ss_dssp             TTSCEEEEEESSCCEEETTEEECHHHHHHHHTTSTTEEEEEEEEEEETTTEEEEEEEEEECTTCCCCHHHHHHHHH
T ss_pred             cCCeEEeCCCcCCeEEECCEEECHHHHHHHHHhCCCccEEEEEEEECCCCCeEEEEEEEeCCCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999988889999999999888899999999885