Psyllid ID: psy13818

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------
Protein Sequence
VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRKRTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ
Secondary Structure (PSIPRED)
cccccccccccccccccEEccccccccccEEEEEEEHHHHHHHHHccccccccccHHHHHHHHHHHHccEEEccccccccccccccccEEEEEEEcccccEEEEEEEccEEEEEEEccEEcccccEEEEEEEEccEEEEEccccHHHHHHHHHcccccccccccHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccccccHcHcccHEcccccccccHEEEEEEEEEHHHHEccEcccccccccccEEEHHHHHEEEEEEEccccccEEEcHcccccEEEEEEcEccEccEEEcccccccEEEEcccccccccccEEEEEEHHccEEEccccHHHHHHHHHHccccccccccccHHHHHHHHHHccccEEEEEccEEEccHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
vgtkieptlcraDRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVrmegdkkgakvqkLTRNEVLLVNIgslstggrvlATKADlakisltnpvctevNEKIALSRRVEKHWSLIEGTVTTKVLSTrkrtgnescpqpqtsEHLAAIEIMKLKHIIILQNKIDlvkegqaneqHEQIVKFVQ
Flexible Loop (DISEMBL)
vgtkieptlcradrlvgqVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGvrmegdkkgakvqkltrnevllvnigslstggrVLATKADlakisltnpvctevnekialsrrvekhwsliegtvttkvlstrkrtgnescpqpqtsEHLAAIEIMKLKHIIILQNKIDLVKEGQaneqheqivkfvq
Low Complexity Region (SEG)
VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRKRTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ
Disordered region (IsUnstruct)
*******TLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVL******************HLAAIEIMKLKHIIILQNKIDLVK****************
Disordered Region (DISOPRED)
VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLL****************TRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRKRTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ
Disordered Region (DISEMBL)
VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRME********QKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLS***************SEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ
Disordered Region (DISPRO)
**TKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRKRTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRKRTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	207	2.2.26 [Sep-21-2011]
Q5ZMS3	472	Eukaryotic translation in	yes	N/A	0.560	0.245	0.707	2e-47
Q9Z0N2	472	Eukaryotic translation in	yes	N/A	0.560	0.245	0.707	2e-47
P41091	472	Eukaryotic translation in	yes	N/A	0.560	0.245	0.707	2e-47
P81795	472	Eukaryotic translation in	yes	N/A	0.560	0.245	0.707	2e-47
Q9Z0N1	472	Eukaryotic translation in	yes	N/A	0.560	0.245	0.707	2e-47
Q2KHU8	472	Eukaryotic translation in	yes	N/A	0.560	0.245	0.707	2e-47
Q2VIR3	472	Putative eukaryotic trans	yes	N/A	0.560	0.245	0.7	3e-47
Q5R797	472	Eukaryotic translation in	yes	N/A	0.560	0.245	0.7	7e-47
Q24208	475	Eukaryotic translation in	yes	N/A	0.560	0.244	0.664	2e-44
Q09130	446	Eukaryotic translation in	yes	N/A	0.555	0.257	0.578	1e-37

>sp|Q5ZMS3|IF2G_CHICK Eukaryotic translation initiation factor 2 subunit 3 OS=Gallus gallus GN=EIF2S3 PE=1 SV=1

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/140 (70%), Positives = 106/140 (75%), Gaps = 24/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTKI+PTLCRADR+VGQVLGAVGALP+IF ELEISY                       
Sbjct: 339 VGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYF---------------------- 376

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
             LL+RLLGVR EGDKK AKVQKL++NEVL+VNIGSLSTGGRV A KADL KI LTNPVC
Sbjct: 377 --LLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVC 434

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TEV EKIALSRRVEKHW LI
Sbjct: 435 TEVGEKIALSRRVEKHWRLI 454

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.
Gallus gallus (taxid: 9031)

>sp|Q9Z0N2|IF2H_MOUSE Eukaryotic translation initiation factor 2 subunit 3, Y-linked OS=Mus musculus GN=Eif2s3y PE=2 SV=2

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/140 (70%), Positives = 106/140 (75%), Gaps = 24/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTKI+PTLCRADR+VGQVLGAVGALP+IF ELEISY                       
Sbjct: 339 VGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYF---------------------- 376

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
             LL+RLLGVR EGDKK AKVQKL++NEVL+VNIGSLSTGGRV A KADL KI LTNPVC
Sbjct: 377 --LLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVC 434

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TEV EKIALSRRVEKHW LI
Sbjct: 435 TEVGEKIALSRRVEKHWRLI 454

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Mus musculus (taxid: 10090)

>sp|P41091|IF2G_HUMAN Eukaryotic translation initiation factor 2 subunit 3 OS=Homo sapiens GN=EIF2S3 PE=1 SV=3

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/140 (70%), Positives = 106/140 (75%), Gaps = 24/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTKI+PTLCRADR+VGQVLGAVGALP+IF ELEISY                       
Sbjct: 339 VGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYF---------------------- 376

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
             LL+RLLGVR EGDKK AKVQKL++NEVL+VNIGSLSTGGRV A KADL KI LTNPVC
Sbjct: 377 --LLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVC 434

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TEV EKIALSRRVEKHW LI
Sbjct: 435 TEVGEKIALSRRVEKHWRLI 454

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Homo sapiens (taxid: 9606)

>sp|P81795|IF2G_RAT Eukaryotic translation initiation factor 2 subunit 3 OS=Rattus norvegicus GN=Eif2s3 PE=1 SV=2

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/140 (70%), Positives = 106/140 (75%), Gaps = 24/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTKI+PTLCRADR+VGQVLGAVGALP+IF ELEISY                       
Sbjct: 339 VGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYF---------------------- 376

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
             LL+RLLGVR EGDKK AKVQKL++NEVL+VNIGSLSTGGRV A KADL KI LTNPVC
Sbjct: 377 --LLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVC 434

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TEV EKIALSRRVEKHW LI
Sbjct: 435 TEVGEKIALSRRVEKHWRLI 454

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z0N1|IF2G_MOUSE Eukaryotic translation initiation factor 2 subunit 3, X-linked OS=Mus musculus GN=Eif2s3x PE=1 SV=2

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/140 (70%), Positives = 106/140 (75%), Gaps = 24/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTKI+PTLCRADR+VGQVLGAVGALP+IF ELEISY                       
Sbjct: 339 VGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYF---------------------- 376

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
             LL+RLLGVR EGDKK AKVQKL++NEVL+VNIGSLSTGGRV A KADL KI LTNPVC
Sbjct: 377 --LLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVC 434

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TEV EKIALSRRVEKHW LI
Sbjct: 435 TEVGEKIALSRRVEKHWRLI 454

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Mus musculus (taxid: 10090)

>sp|Q2KHU8|IF2G_BOVIN Eukaryotic translation initiation factor 2 subunit 3 OS=Bos taurus GN=EIF2S3 PE=2 SV=1

 Score =  188 bits (478), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/140 (70%), Positives = 106/140 (75%), Gaps = 24/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTKI+PTLCRADR+VGQVLGAVGALP+IF ELEISY                       
Sbjct: 339 VGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYF---------------------- 376

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
             LL+RLLGVR EGDKK AKVQKL++NEVL+VNIGSLSTGGRV A KADL KI LTNPVC
Sbjct: 377 --LLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVC 434

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TEV EKIALSRRVEKHW LI
Sbjct: 435 TEVGEKIALSRRVEKHWRLI 454

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Bos taurus (taxid: 9913)

>sp|Q2VIR3|IF2GL_HUMAN Putative eukaryotic translation initiation factor 2 subunit 3-like protein OS=Homo sapiens GN=EIF2S3L PE=5 SV=2

 Score =  187 bits (476), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 98/140 (70%), Positives = 106/140 (75%), Gaps = 24/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTKI+PTLCRADR+VGQ+LGAVGALP+IF ELEISY                       
Sbjct: 339 VGTKIDPTLCRADRMVGQILGAVGALPEIFTELEISYF---------------------- 376

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
             LL+RLLGVR EGDKK AKVQKL++NEVL+VNIGSLSTGGRV A KADL KI LTNPVC
Sbjct: 377 --LLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVC 434

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TEV EKIALSRRVEKHW LI
Sbjct: 435 TEVGEKIALSRRVEKHWRLI 454

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Homo sapiens (taxid: 9606)

>sp|Q5R797|IF2G_PONAB Eukaryotic translation initiation factor 2 subunit 3 OS=Pongo abelii GN=EIF2S3 PE=2 SV=1

 Score =  186 bits (473), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 98/140 (70%), Positives = 105/140 (75%), Gaps = 24/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTKI+PTLCRADR+VGQVLGAVGALP+IF ELEISY                       
Sbjct: 339 VGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYF---------------------- 376

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
             LL+RLLGVR EGDKK AKVQKL++NEVL+VNIG LSTGGRV A KADL KI LTNPVC
Sbjct: 377 --LLRRLLGVRTEGDKKAAKVQKLSKNEVLMVNIGPLSTGGRVSAVKADLGKIVLTNPVC 434

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TEV EKIALSRRVEKHW LI
Sbjct: 435 TEVGEKIALSRRVEKHWRLI 454

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Pongo abelii (taxid: 9601)

>sp|Q24208|IF2G_DROME Eukaryotic translation initiation factor 2 subunit 3 OS=Drosophila melanogaster GN=Su(var)3-9 PE=2 SV=1

 Score =  178 bits (451), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 93/140 (66%), Positives = 103/140 (73%), Gaps = 24/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTKI+PTLCRADRLVGQVLGAVG LP I+ ELEISY+                      
Sbjct: 338 VGTKIDPTLCRADRLVGQVLGAVGQLPDIYQELEISYY---------------------- 375

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
             LL+RLLGVR +GDKKGA+V+KL +NE+LLVNIGSLSTGGR+ ATK DLAKI LT PVC
Sbjct: 376 --LLRRLLGVRTDGDKKGARVEKLQKNEILLVNIGSLSTGGRISATKGDLAKIVLTTPVC 433

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TE  EKIALSRRVE HW LI
Sbjct: 434 TEKGEKIALSRRVENHWRLI 453

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Drosophila melanogaster (taxid: 7227)

>sp|Q09130|IF2G_SCHPO Eukaryotic translation initiation factor 2 subunit gamma OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tif213 PE=2 SV=1

 Score =  156 bits (394), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/140 (57%), Positives = 97/140 (69%), Gaps = 25/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGT ++PTLCRADRLVGQVLG+ G LP+++ ELEI+Y L                     
Sbjct: 319 VGTTVDPTLCRADRLVGQVLGSKGNLPEVYTELEINYFL--------------------- 357

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
              L+RLLGV+  GDK   KVQKL +NEVL+VNIGS STGGRV+  KAD+AKI LT P C
Sbjct: 358 ---LRRLLGVK-SGDKNTTKVQKLAKNEVLMVNIGSTSTGGRVMMVKADMAKILLTAPAC 413

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TE+ EK+ALSRR+EKHW LI
Sbjct: 414 TEIGEKVALSRRIEKHWRLI 433

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. This complex binds to a 40S ribosomal subunit, followed by mRNA binding to form a 43S preinitiation complex. Junction of the 60S ribosomal subunit to form the 80S initiation complex is preceded by hydrolysis of the GTP bound to eIF-2 and release of an eIF-2-GDP binary complex. In order for eIF-2 to recycle and catalyze another round of initiation, the GDP bound to eIF-2 must exchange with GTP by way of a reaction catalyzed by eIF-2B.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
51965696	473	translation initiation factor 2 gamma su	0.560	0.245	0.771	1e-51
156537626	473	PREDICTED: eukaryotic translation initia	0.560	0.245	0.771	5e-51
340727719	1082	PREDICTED: hypothetical protein LOC10065	0.560	0.107	0.757	9e-51
51965692	473	translation initiation factor 2 gamma su	0.560	0.245	0.764	2e-50
283837917	473	suppressor of variegation 3-9 isoform 2	0.560	0.245	0.757	3e-50
383859816	1055	PREDICTED: uncharacterized protein LOC10	0.560	0.109	0.75	3e-50
170070385	418	conserved hypothetical protein [Culex qu	0.560	0.277	0.75	4e-50
51965700	458	translation initiation factor 2 gamma su	0.560	0.253	0.764	6e-50
51965694	475	translation initiation factor 2 gamma su	0.560	0.244	0.764	1e-49
9409732	473	eukaryotic translation initiation factor	0.560	0.245	0.735	4e-49

>gi|51965696|emb|CAG29670.1| translation initiation factor 2 gamma subunit [Forficula auricularia]

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 108/140 (77%), Positives = 115/140 (82%), Gaps = 24/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTKIEPTLCRADRLVGQVLGAVGALP+++IELE+SY+                      
Sbjct: 338 VGTKIEPTLCRADRLVGQVLGAVGALPEMYIELEVSYY---------------------- 375

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
             LLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC
Sbjct: 376 --LLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 433

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TE++EKIALSRRVEKHW LI
Sbjct: 434 TEIDEKIALSRRVEKHWRLI 453

Source: Forficula auricularia

Species: Forficula auricularia

Genus: Forficula

Family: Forficulidae

Order: Dermaptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156537626|ref|XP_001607783.1| PREDICTED: eukaryotic translation initiation factor 2 subunit 3, Y-linked-like [Nasonia vitripennis]

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 108/140 (77%), Positives = 113/140 (80%), Gaps = 24/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTKIEPTLCRADRLVGQ+LGAVGALPKIFIELEISY+                      
Sbjct: 340 VGTKIEPTLCRADRLVGQILGAVGALPKIFIELEISYY---------------------- 377

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
             LLKRLLGVR EGDKKGAKV KL+RNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC
Sbjct: 378 --LLKRLLGVRTEGDKKGAKVPKLSRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 435

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TE++EKIALSRRVEKHW LI
Sbjct: 436 TEIDEKIALSRRVEKHWRLI 455

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340727719|ref|XP_003402185.1| PREDICTED: hypothetical protein LOC100651661 [Bombus terrestris]

 Score =  205 bits (521), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 106/140 (75%), Positives = 113/140 (80%), Gaps = 24/140 (17%)

Query: 1    VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
            VGTKIEPTLCRADRLVGQ+LGAVGALPKIFIELEISY+                      
Sbjct: 949  VGTKIEPTLCRADRLVGQILGAVGALPKIFIELEISYY---------------------- 986

Query: 61   YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
              LLKRLLGVR EGDKKGA+V KL+RNEVLLVNIGSLSTGGRVLAT+ADLAKISLTNPVC
Sbjct: 987  --LLKRLLGVRTEGDKKGARVPKLSRNEVLLVNIGSLSTGGRVLATRADLAKISLTNPVC 1044

Query: 121  TEVNEKIALSRRVEKHWSLI 140
            TE++EKIALSRRVEKHW LI
Sbjct: 1045 TEIDEKIALSRRVEKHWRLI 1064

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|51965692|emb|CAG29668.1| translation initiation factor 2 gamma subunit [Lepismachilis sp. VK-2004]

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 107/140 (76%), Positives = 112/140 (80%), Gaps = 24/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISY+                      
Sbjct: 341 VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYY---------------------- 378

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
             LLKRLLGVRMEGDKK AKVQKL +NEVL+VNIGSLSTGGRV+ATKADLAKI+LTNPVC
Sbjct: 379 --LLKRLLGVRMEGDKKAAKVQKLAKNEVLMVNIGSLSTGGRVVATKADLAKITLTNPVC 436

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TEV EKIALSRRVEKHW LI
Sbjct: 437 TEVGEKIALSRRVEKHWRLI 456

Source: Lepismachilis sp. VK-2004

Species: Lepismachilis sp. VK-2004

Genus: Lepismachilis

Family: Machilidae

Order: Archaeognatha

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|283837917|ref|NP_001164640.1| suppressor of variegation 3-9 isoform 2 [Apis mellifera] gi|350412047|ref|XP_003489527.1| PREDICTED: eukaryotic translation initiation factor 2 subunit 3, Y-linked-like [Bombus impatiens]

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 106/140 (75%), Positives = 113/140 (80%), Gaps = 24/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTKIEPTLCRADRLVGQ+LGAVGALPKIFIELEISY+                      
Sbjct: 340 VGTKIEPTLCRADRLVGQILGAVGALPKIFIELEISYY---------------------- 377

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
             LLKRLLGVR EGDKKGA+V KL+RNEVLLVNIGSLSTGGRVLAT+ADLAKISLTNPVC
Sbjct: 378 --LLKRLLGVRTEGDKKGARVPKLSRNEVLLVNIGSLSTGGRVLATRADLAKISLTNPVC 435

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TE++EKIALSRRVEKHW LI
Sbjct: 436 TEIDEKIALSRRVEKHWRLI 455

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383859816|ref|XP_003705388.1| PREDICTED: uncharacterized protein LOC100876321 [Megachile rotundata]

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 105/140 (75%), Positives = 113/140 (80%), Gaps = 24/140 (17%)

Query: 1    VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
            VGTKIEPTLCRADRLVGQ+LGAVGALPKIFIELEISY+                      
Sbjct: 922  VGTKIEPTLCRADRLVGQILGAVGALPKIFIELEISYY---------------------- 959

Query: 61   YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
              LLKRLLGVR EGDKKGA+V KL++NEVLLVNIGSLSTGGRVLAT+ADLAKISLTNPVC
Sbjct: 960  --LLKRLLGVRTEGDKKGARVPKLSKNEVLLVNIGSLSTGGRVLATRADLAKISLTNPVC 1017

Query: 121  TEVNEKIALSRRVEKHWSLI 140
            TE++EKIALSRRVEKHW LI
Sbjct: 1018 TEIDEKIALSRRVEKHWRLI 1037

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170070385|ref|XP_001869561.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167866297|gb|EDS29680.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 105/140 (75%), Positives = 114/140 (81%), Gaps = 24/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTKIEPTLCRADRLVGQVLGAVGALPKIF+ELE+SY+                      
Sbjct: 287 VGTKIEPTLCRADRLVGQVLGAVGALPKIFVELEVSYY---------------------- 324

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
             LLKRLLGVRMEGDKKGAKVQKLT+NE+LLVNIGSLSTGGRV+A+KADLAKI+LTNPVC
Sbjct: 325 --LLKRLLGVRMEGDKKGAKVQKLTKNEMLLVNIGSLSTGGRVVASKADLAKIALTNPVC 382

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TE +EKIALSRRVEKHW LI
Sbjct: 383 TEKDEKIALSRRVEKHWRLI 402

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|51965700|emb|CAG29672.1| translation initiation factor 2 gamma subunit [Locusta migratoria]

 Score =  202 bits (515), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 107/140 (76%), Positives = 112/140 (80%), Gaps = 24/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTKIEPTLCRADRLVGQVLGAVGALP+IFIELE+SY+                      
Sbjct: 327 VGTKIEPTLCRADRLVGQVLGAVGALPEIFIELEVSYY---------------------- 364

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
             LLKRLLGVR EGDKKGAKVQKLT+ EVLLVNIGSLSTGGRVLAT+ADLAKISLTNPVC
Sbjct: 365 --LLKRLLGVRTEGDKKGAKVQKLTKGEVLLVNIGSLSTGGRVLATRADLAKISLTNPVC 422

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TEV EKIALSRRVEKHW LI
Sbjct: 423 TEVGEKIALSRRVEKHWRLI 442

Source: Locusta migratoria

Species: Locusta migratoria

Genus: Locusta

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|51965694|emb|CAG29669.1| translation initiation factor 2 gamma subunit [Enallagma cyathigerum]

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 107/140 (76%), Positives = 110/140 (78%), Gaps = 24/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELE SY+                      
Sbjct: 340 VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEFSYY---------------------- 377

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
             LLKRLLGVR EGDKK AKVQKL R EVLLVNIGSLSTGG+V+ATKADLAKISLTNPVC
Sbjct: 378 --LLKRLLGVRTEGDKKAAKVQKLARGEVLLVNIGSLSTGGKVIATKADLAKISLTNPVC 435

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TEVNEKIALSRRVEKHW LI
Sbjct: 436 TEVNEKIALSRRVEKHWRLI 455

Source: Enallagma cyathigerum

Species: Enallagma cyathigerum

Genus: Enallagma

Family: Coenagrionidae

Order: Odonata

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|9409732|emb|CAB98197.1| eukaryotic translation initiation factor 2 gamma [Clytus arietis]

 Score =  199 bits (507), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 103/140 (73%), Positives = 112/140 (80%), Gaps = 24/140 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTKIEPTLCRADRLVGQVLGAVGALP IFIELE+SY+                      
Sbjct: 340 VGTKIEPTLCRADRLVGQVLGAVGALPSIFIELEVSYY---------------------- 377

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
             LLKRLLGVRMEGDKKGAKVQ+L+++EVLLVNIGSLSTGGRV+ATKADL KI+LTNPVC
Sbjct: 378 --LLKRLLGVRMEGDKKGAKVQRLSKSEVLLVNIGSLSTGGRVVATKADLCKIALTNPVC 435

Query: 121 TEVNEKIALSRRVEKHWSLI 140
           TE+ EKIALSRRVEKHW LI
Sbjct: 436 TEIGEKIALSRRVEKHWRLI 455

Source: Clytus arietis

Species: Clytus arietis

Genus: Clytus

Family: Cerambycidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	207
ZFIN|ZDB-GENE-030131-5552	472	eif2s3 "eukaryotic translation	0.579	0.254	0.658	1.4e-32
UNIPROTKB|Q2VIR3	472	EIF2S3L "Putative eukaryotic t	0.579	0.254	0.65	2.9e-32
UNIPROTKB|F1NPF0	472	EIF2S3 "Eukaryotic translation	0.579	0.254	0.65	3.7e-32
UNIPROTKB|Q5ZMS3	472	EIF2S3 "Eukaryotic translation	0.579	0.254	0.65	3.7e-32
UNIPROTKB|G3N0A9	473	EIF2S3Y "Uncharacterized prote	0.579	0.253	0.65	3.7e-32
UNIPROTKB|Q2KHU8	472	EIF2S3 "Eukaryotic translation	0.579	0.254	0.65	3.7e-32
UNIPROTKB|E2RMK6	472	EIF2S3 "Uncharacterized protei	0.579	0.254	0.65	3.7e-32
UNIPROTKB|P41091	472	EIF2S3 "Eukaryotic translation	0.579	0.254	0.65	3.7e-32
UNIPROTKB|F1SPY4	472	EIF2S3 "Eukaryotic translation	0.579	0.254	0.65	3.7e-32
UNIPROTKB|Q2VIR0	471	Q2VIR0 "EFI-2-gamma" [Pongo py	0.579	0.254	0.65	3.7e-32

ZFIN|ZDB-GENE-030131-5552 eif2s3 "eukaryotic translation initiation factor 2, subunit 3 gamma" [Danio rerio (taxid:7955)]

 Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
 Identities = 79/120 (65%), Positives = 91/120 (75%)

Query:    21 GAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAK 80
             G +G   KI   L  +  ++ ++LG      +   +LEISY LL+RLLGVR EGDKK AK
Sbjct:   335 GLIGVGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAK 394

Query:    81 VQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLI 140
             VQKL++NEVL+VNIGSLSTGGRV A KADLAKI LTNPVCTEV EKIALSRRVEKHW LI
Sbjct:   395 VQKLSKNEVLMVNIGSLSTGGRVSAVKADLAKIVLTNPVCTEVGEKIALSRRVEKHWRLI 454

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

UNIPROTKB|Q2VIR3 EIF2S3L "Putative eukaryotic translation initiation factor 2 subunit 3-like protein" [Homo sapiens (taxid:9606)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 78/120 (65%), Positives = 90/120 (75%)

Query:    21 GAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAK 80
             G +G   KI   L  +  ++ ++LG      +   +LEISY LL+RLLGVR EGDKK AK
Sbjct:   335 GLIGVGTKIDPTLCRADRMVGQILGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAK 394

Query:    81 VQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLI 140
             VQKL++NEVL+VNIGSLSTGGRV A KADL KI LTNPVCTEV EKIALSRRVEKHW LI
Sbjct:   395 VQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLI 454

GO:0003924 "GTPase activity" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|F1NPF0 EIF2S3 "Eukaryotic translation initiation factor 2 subunit 3" [Gallus gallus (taxid:9031)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 78/120 (65%), Positives = 90/120 (75%)

Query:    21 GAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAK 80
             G +G   KI   L  +  ++ ++LG      +   +LEISY LL+RLLGVR EGDKK AK
Sbjct:   335 GLIGVGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAK 394

Query:    81 VQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLI 140
             VQKL++NEVL+VNIGSLSTGGRV A KADL KI LTNPVCTEV EKIALSRRVEKHW LI
Sbjct:   395 VQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLI 454

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|Q5ZMS3 EIF2S3 "Eukaryotic translation initiation factor 2 subunit 3" [Gallus gallus (taxid:9031)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 78/120 (65%), Positives = 90/120 (75%)

Query:    21 GAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAK 80
             G +G   KI   L  +  ++ ++LG      +   +LEISY LL+RLLGVR EGDKK AK
Sbjct:   335 GLIGVGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAK 394

Query:    81 VQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLI 140
             VQKL++NEVL+VNIGSLSTGGRV A KADL KI LTNPVCTEV EKIALSRRVEKHW LI
Sbjct:   395 VQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLI 454

GO:0003924 "GTPase activity" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

UNIPROTKB|G3N0A9 EIF2S3Y "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 78/120 (65%), Positives = 90/120 (75%)

Query:    21 GAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAK 80
             G +G   KI   L  +  ++ ++LG      +   +LEISY LL+RLLGVR EGDKK AK
Sbjct:   336 GLIGVGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAK 395

Query:    81 VQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLI 140
             VQKL++NEVL+VNIGSLSTGGRV A KADL KI LTNPVCTEV EKIALSRRVEKHW LI
Sbjct:   396 VQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLI 455

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|Q2KHU8 EIF2S3 "Eukaryotic translation initiation factor 2 subunit 3" [Bos taurus (taxid:9913)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 78/120 (65%), Positives = 90/120 (75%)

Query:    21 GAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAK 80
             G +G   KI   L  +  ++ ++LG      +   +LEISY LL+RLLGVR EGDKK AK
Sbjct:   335 GLIGVGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAK 394

Query:    81 VQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLI 140
             VQKL++NEVL+VNIGSLSTGGRV A KADL KI LTNPVCTEV EKIALSRRVEKHW LI
Sbjct:   395 VQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLI 454

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

GO:0006413 "translational initiation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

UNIPROTKB|E2RMK6 EIF2S3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 78/120 (65%), Positives = 90/120 (75%)

Query:    21 GAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAK 80
             G +G   KI   L  +  ++ ++LG      +   +LEISY LL+RLLGVR EGDKK AK
Sbjct:   335 GLIGVGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAK 394

Query:    81 VQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLI 140
             VQKL++NEVL+VNIGSLSTGGRV A KADL KI LTNPVCTEV EKIALSRRVEKHW LI
Sbjct:   395 VQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLI 454

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|P41091 EIF2S3 "Eukaryotic translation initiation factor 2 subunit 3" [Homo sapiens (taxid:9606)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 78/120 (65%), Positives = 90/120 (75%)

Query:    21 GAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAK 80
             G +G   KI   L  +  ++ ++LG      +   +LEISY LL+RLLGVR EGDKK AK
Sbjct:   335 GLIGVGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAK 394

Query:    81 VQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLI 140
             VQKL++NEVL+VNIGSLSTGGRV A KADL KI LTNPVCTEV EKIALSRRVEKHW LI
Sbjct:   395 VQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLI 454

GO:0003924 "GTPase activity" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IDA

GO:0006413 "translational initiation" evidence=IDA;TAS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0006184 "GTP catabolic process" evidence=TAS

UNIPROTKB|F1SPY4 EIF2S3 "Eukaryotic translation initiation factor 2 subunit 3" [Sus scrofa (taxid:9823)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 78/120 (65%), Positives = 90/120 (75%)

Query:    21 GAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAK 80
             G +G   KI   L  +  ++ ++LG      +   +LEISY LL+RLLGVR EGDKK AK
Sbjct:   335 GLIGVGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAK 394

Query:    81 VQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLI 140
             VQKL++NEVL+VNIGSLSTGGRV A KADL KI LTNPVCTEV EKIALSRRVEKHW LI
Sbjct:   395 VQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLI 454

GO:0005525 "GTP binding" evidence=IEA

GO:0003924 "GTPase activity" evidence=IEA

UNIPROTKB|Q2VIR0 Q2VIR0 "EFI-2-gamma" [Pongo pygmaeus (taxid:9600)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 78/120 (65%), Positives = 90/120 (75%)

Query:    21 GAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAK 80
             G +G   KI   L  +  ++ ++LG      +   +LEISY LL+RLLGVR EGDKK AK
Sbjct:   335 GLIGVGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEGDKKAAK 394

Query:    81 VQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLI 140
             VQKL++NEVL+VNIGSLSTGGRV A KADL KI LTNPVCTEV EKIALSRRVEKHW LI
Sbjct:   395 VQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVCTEVGEKIALSRRVEKHWRLI 454

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0006413 "translational initiation" evidence=ISS

GO:0008135 "translation factor activity, nucleic acid binding" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q54XD8	IF2G_DICDI	No assigned EC number	0.5263	0.5845	0.2630	yes	N/A
Q2KHU8	IF2G_BOVIN	No assigned EC number	0.7071	0.5603	0.2457	yes	N/A
Q9Z0N1	IF2G_MOUSE	No assigned EC number	0.7071	0.5603	0.2457	yes	N/A
Q9Z0N2	IF2H_MOUSE	No assigned EC number	0.7071	0.5603	0.2457	yes	N/A
Q5ZMS3	IF2G_CHICK	No assigned EC number	0.7071	0.5603	0.2457	yes	N/A
Q09130	IF2G_SCHPO	No assigned EC number	0.5785	0.5555	0.2578	yes	N/A
P32481	IF2G_YEAST	No assigned EC number	0.5578	0.5845	0.2296	yes	N/A
Q5R797	IF2G_PONAB	No assigned EC number	0.7	0.5603	0.2457	yes	N/A
Q24208	IF2G_DROME	No assigned EC number	0.6642	0.5603	0.2442	yes	N/A
P81795	IF2G_RAT	No assigned EC number	0.7071	0.5603	0.2457	yes	N/A
Q2VIR3	IF2GL_HUMAN	No assigned EC number	0.7	0.5603	0.2457	yes	N/A
P41091	IF2G_HUMAN	No assigned EC number	0.7071	0.5603	0.2457	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	207
PTZ00327	460	PTZ00327, PTZ00327, eukaryotic translation initiat	2e-51
COG5257	415	COG5257, GCD11, Translation initiation factor 2, g	4e-38
pfam09173	88	pfam09173, eIF2_C, Initiation factor eIF2 gamma, C	8e-36
cd01888	197	cd01888, eIF2_gamma, Gamma subunit of initiation f	3e-29
PTZ00327	460	PTZ00327, PTZ00327, eukaryotic translation initiat	3e-28
PRK04000	411	PRK04000, PRK04000, translation initiation factor	6e-26
TIGR03680	406	TIGR03680, eif2g_arch, translation initiation fact	1e-23
COG5257	415	COG5257, GCD11, Translation initiation factor 2, g	8e-23
PRK04000	411	PRK04000, PRK04000, translation initiation factor	4e-19
TIGR03680	406	TIGR03680, eif2g_arch, translation initiation fact	1e-17
cd03688	113	cd03688, eIF2_gamma_II, eIF2_gamma_II: this subfam	9e-09
cd04171	170	cd04171, SelB, SelB, the dedicated elongation fact	1e-06
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	1e-05
COG3276	447	COG3276, SelB, Selenocysteine-specific translation	0.002
TIGR00475	581	TIGR00475, selB, selenocysteine-specific elongatio	0.002

>gnl|CDD|240362 PTZ00327, PTZ00327, eukaryotic translation initiation factor 2 gamma subunit; Provisional

 Score =  171 bits (436), Expect = 2e-51
 Identities = 74/141 (52%), Positives = 91/141 (64%), Gaps = 25/141 (17%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGT I+PTL RADRLVGQVLG  G LP+++ E                        +EI 
Sbjct: 328 VGTTIDPTLTRADRLVGQVLGYPGKLPEVYAE------------------------IEIQ 363

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKAD-LAKISLTNPV 119
           Y+LL+RLLGV+ +  KK  KV KL + E L++NIGS +TGGRV+  K D +AK+ LT PV
Sbjct: 364 YYLLRRLLGVKSQDGKKATKVAKLKKGESLMINIGSTTTGGRVVGIKDDGIAKLELTTPV 423

Query: 120 CTEVNEKIALSRRVEKHWSLI 140
           CT V EKIALSRRV+KHW LI
Sbjct: 424 CTSVGEKIALSRRVDKHWRLI 444

Length = 460

>gnl|CDD|227582 COG5257, GCD11, Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

 Score =  135 bits (342), Expect = 4e-38
 Identities = 52/140 (37%), Positives = 78/140 (55%), Gaps = 29/140 (20%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTK++PTL +AD LVGQV+G  G LP ++  + I YHLL+R++G               
Sbjct: 296 VGTKLDPTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVVGT-------------- 341

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
                          K+  KV+ +  NEVL++N+G+ +T G V + K D  ++ L  PVC
Sbjct: 342 ---------------KEELKVEPIKTNEVLMLNVGTATTVGVVTSAKKDEIEVKLKRPVC 386

Query: 121 TEVNEKIALSRRVEKHWSLI 140
            E+ E++A+SRR+   W LI
Sbjct: 387 AEIGERVAISRRIGNRWRLI 406

Length = 415

>gnl|CDD|150009 pfam09173, eIF2_C, Initiation factor eIF2 gamma, C terminal

 Score =  120 bits (304), Expect = 8e-36
 Identities = 47/85 (55%), Positives = 66/85 (77%), Gaps = 4/85 (4%)

Query: 56  KLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISL 115
           ++EI Y+LL+RL+GV+    ++ AKV+KL + EVL++NIGS +TGG V A K DLA++ L
Sbjct: 3   EIEIEYYLLERLVGVK----EEEAKVEKLKKGEVLMLNIGSATTGGVVTAVKKDLAEVEL 58

Query: 116 TNPVCTEVNEKIALSRRVEKHWSLI 140
             PVCTE+ EK+A+SRRV+K W LI
Sbjct: 59  KRPVCTEIGEKVAISRRVDKRWRLI 83

Members of this family, which are found in the initiation factors eIF2 and EF-Tu, adopt a structure consisting of a beta barrel with Greek key topology. They are required for formation of the ternary complex with GTP and initiator tRNA. Length = 88

>gnl|CDD|206675 cd01888, eIF2_gamma, Gamma subunit of initiation factor 2 (eIF2 gamma)

 Score =  107 bits (269), Expect = 3e-29
 Identities = 41/52 (78%), Positives = 45/52 (86%)

Query: 156 GNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
            NE CPQPQTSEHLAA+EIM LKHIIILQNKIDLVKE QA E +EQI +FV+
Sbjct: 110 ANEPCPQPQTSEHLAALEIMGLKHIIILQNKIDLVKEEQALENYEQIKEFVK 161

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the selenocysteine-specific elongation factor from eubacteria. The translational factor components of the ternary complex, IF2 in eubacteria and eIF2 in eukaryotes are not the same protein (despite their unfortunately similar names). Both factors are GTPases; however, eubacterial IF-2 is a single polypeptide, while eIF2 is heterotrimeric. eIF2-gamma is a member of the same family as eubacterial IF2, but the two proteins are only distantly related. This family includes translation initiation, elongation, and release factors. Length = 197

>gnl|CDD|240362 PTZ00327, PTZ00327, eukaryotic translation initiation factor 2 gamma subunit; Provisional

 Score =  109 bits (275), Expect = 3e-28
 Identities = 42/52 (80%), Positives = 47/52 (90%)

Query: 156 GNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
            NESCPQPQTSEHLAA+EIMKLKHIIILQNKIDLVKE QA +Q+E+I  FV+
Sbjct: 150 ANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYEEIRNFVK 201

Length = 460

>gnl|CDD|235194 PRK04000, PRK04000, translation initiation factor IF-2 subunit gamma; Validated

 Score =  103 bits (258), Expect = 6e-26
 Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 29/140 (20%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTK++P+L +AD L G V G  G LP ++  L I  HLL+R++G               
Sbjct: 295 VGTKLDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVVGT-------------- 340

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
                          K+  KV+ +   E L++N+G+ +T G V + + D A++ L  PVC
Sbjct: 341 ---------------KEELKVEPIKTGEPLMLNVGTATTVGVVTSARKDEAEVKLKRPVC 385

Query: 121 TEVNEKIALSRRVEKHWSLI 140
            E  +++A+SRRV   W LI
Sbjct: 386 AEEGDRVAISRRVGGRWRLI 405

Length = 411

>gnl|CDD|211860 TIGR03680, eif2g_arch, translation initiation factor 2 subunit gamma

 Score = 96.7 bits (241), Expect = 1e-23
 Identities = 48/140 (34%), Positives = 73/140 (52%), Gaps = 29/140 (20%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTK++P L +AD L GQV+G  G LP ++  LE+  HLL+R++G   E           
Sbjct: 290 VGTKLDPALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVVGTEEE----------- 338

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
                              KV+ +   EVL++N+G+ +T G V + + D  ++ L  PVC
Sbjct: 339 ------------------LKVEPIKTGEVLMLNVGTATTVGVVTSARKDEIEVKLKRPVC 380

Query: 121 TEVNEKIALSRRVEKHWSLI 140
            E  +++A+SRRV   W LI
Sbjct: 381 AEEGDRVAISRRVGGRWRLI 400

This model represents the archaeal translation initiation factor 2 subunit gamma and is found in all known archaea. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Length = 406

>gnl|CDD|227582 COG5257, GCD11, Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

 Score = 94.3 bits (235), Expect = 8e-23
 Identities = 32/52 (61%), Positives = 41/52 (78%)

Query: 156 GNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
            NE CPQPQT EHL A+EI+ +K+III+QNKIDLV   +A E +EQI +FV+
Sbjct: 119 ANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFVK 170

Length = 415

>gnl|CDD|235194 PRK04000, PRK04000, translation initiation factor IF-2 subunit gamma; Validated

 Score = 83.7 bits (208), Expect = 4e-19
 Identities = 30/50 (60%), Positives = 41/50 (82%)

Query: 157 NESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFV 206
           NE CPQPQT EHL A++I+ +K+I+I+QNKIDLV + +A E +EQI +FV
Sbjct: 119 NEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERALENYEQIKEFV 168

Length = 411

>gnl|CDD|211860 TIGR03680, eif2g_arch, translation initiation factor 2 subunit gamma

 Score = 79.3 bits (196), Expect = 1e-17
 Identities = 30/50 (60%), Positives = 41/50 (82%)

Query: 157 NESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFV 206
           NE CPQPQT EHL A+EI+ +K+I+I+QNKIDLV + +A E +E+I +FV
Sbjct: 114 NEPCPQPQTREHLMALEIIGIKNIVIVQNKIDLVSKEKALENYEEIKEFV 163

This model represents the archaeal translation initiation factor 2 subunit gamma and is found in all known archaea. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA. Length = 406

>gnl|CDD|239659 cd03688, eIF2_gamma_II, eIF2_gamma_II: this subfamily represents the domain II of the gamma subunit of eukaryotic translation initiation factor 2 (eIF2-gamma) found in Eukaryota and Archaea

 Score = 51.0 bits (123), Expect = 9e-09
 Identities = 17/24 (70%), Positives = 21/24 (87%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVG 24
           VGTK++PTL +ADRLVGQV+G  G
Sbjct: 90  VGTKLDPTLTKADRLVGQVVGEPG 113

eIF2 is a G protein that delivers the methionyl initiator tRNA to the small ribosomal subunit and releases it upon GTP hydrolysis after the recognition of the initiation codon. eIF2 is composed three subunits, alpha, beta and gamma. Subunit gamma shows strongest conservation, and it confers both tRNA binding and GTP/GDP binding. Length = 113

>gnl|CDD|206734 cd04171, SelB, SelB, the dedicated elongation factor for delivery of selenocysteinyl-tRNA to the ribosome

 Score = 46.4 bits (111), Expect = 1e-06
 Identities = 15/46 (32%), Positives = 27/46 (58%)

Query: 162 QPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
            PQT EHL  +E++ +K  +++  K DLV E +     E+I++ + 
Sbjct: 88  MPQTREHLEILELLGIKKGLVVLTKADLVDEDRLELVEEEILELLA 133

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryotes, they do share a common feature. Unlike in E. coli, these SECIS elements are located in the 3' UTRs. This group contains bacterial SelBs, as well as, one from archaea. Length = 170

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 43.6 bits (104), Expect = 1e-05
 Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 1/43 (2%)

Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIV 203
             PQT EHL   + + +  II+  NKID V + +  E  E+I 
Sbjct: 103 VMPQTREHLLLAKTLGVP-IIVFINKIDRVDDAELEEVVEEIS 144

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

>gnl|CDD|225815 COG3276, SelB, Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

 Score = 38.1 bits (89), Expect = 0.002
 Identities = 14/45 (31%), Positives = 26/45 (57%)

Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKF 205
              QT EHL  ++++ +K+ II+  K D V E +  ++ +QI+  
Sbjct: 87  LMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILAD 131

Length = 447

>gnl|CDD|129567 TIGR00475, selB, selenocysteine-specific elongation factor SelB

 Score = 38.3 bits (89), Expect = 0.002
 Identities = 12/47 (25%), Positives = 23/47 (48%)

Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
              QT EHLA ++++ + H I++  K D V E +       + + + 
Sbjct: 87  VMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQILN 133

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes [Protein synthesis, Translation factors]. Length = 581

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	207
KOG0466|consensus	466		100.0
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	100.0
PF09173	88	eIF2_C: Initiation factor eIF2 gamma, C terminal;	99.97
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.92
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.79
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.77
KOG0460|consensus	449		99.76
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.75
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.73
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.66
KOG0466|consensus	466		99.63
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.62
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.61
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.54
KOG0458|consensus	603		99.53
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.47
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.46
PLN03126	478	Elongation factor Tu; Provisional	99.42
PTZ00141	446	elongation factor 1- alpha; Provisional	99.39
PLN03127	447	Elongation factor Tu; Provisional	99.38
PLN00043	447	elongation factor 1-alpha; Provisional	99.38
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.32
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.29
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.28
PRK12736	394	elongation factor Tu; Reviewed	99.25
CHL00071	409	tufA elongation factor Tu	99.2
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.2
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.16
PRK12735	396	elongation factor Tu; Reviewed	99.16
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.14
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.11
KOG0459|consensus	501		99.1
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.09
PRK00049	396	elongation factor Tu; Reviewed	99.08
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.07
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.06
PRK12317	425	elongation factor 1-alpha; Reviewed	98.98
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	98.97
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	98.78
cd04094	97	selB_III This family represents the domain of elon	98.58
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	98.58
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	98.56
COG5258	527	GTPBP1 GTPase [General function prediction only]	98.53
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	98.49
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	98.43
COG1217	603	TypA Predicted membrane GTPase involved in stress	98.39
KOG0461|consensus	522		98.35
KOG0052|consensus	391		98.34
PRK05306	787	infB translation initiation factor IF-2; Validated	98.3
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	98.28
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	98.23
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	98.22
PRK00007	693	elongation factor G; Reviewed	98.21
PRK10218	607	GTP-binding protein; Provisional	98.21
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	98.1
PLN00116	843	translation elongation factor EF-2 subunit; Provis	98.07
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	98.06
CHL00189	742	infB translation initiation factor 2; Provisional	98.03
PRK12739	691	elongation factor G; Reviewed	98.01
KOG0462|consensus	650		97.95
KOG1143|consensus	591		97.88
PTZ00416	836	elongation factor 2; Provisional	97.87
PRK07560	731	elongation factor EF-2; Reviewed	97.81
PRK04004	586	translation initiation factor IF-2; Validated	97.78
KOG1145|consensus	683		97.76
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	97.68
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	97.66
PRK00741	526	prfC peptide chain release factor 3; Provisional	97.66
PRK05433	600	GTP-binding protein LepA; Provisional	97.63
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	97.57
PRK14845	1049	translation initiation factor IF-2; Provisional	97.57
KOG0463|consensus	641		97.56
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	97.55
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	97.51
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	97.47
cd00881	189	GTP_translation_factor GTP translation factor fami	97.38
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	97.36
TIGR00503	527	prfC peptide chain release factor 3. This translat	97.33
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	97.3
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	97.27
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	97.12
PRK13351	687	elongation factor G; Reviewed	97.11
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	97.05
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	96.99
cd03707	90	EFTU_III Domain III of elongation factor (EF) Tu.	96.91
cd03706	93	mtEFTU_III Domain III of mitochondrial EF-TU (mtEF	96.78
PRK12740	668	elongation factor G; Reviewed	96.78
CHL00071	409	tufA elongation factor Tu	96.69
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	96.53
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	96.27
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	96.17
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	95.97
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	95.81
cd01513	102	Translation_factor_III Domain III of Elongation fa	95.76
PRK00093	435	GTP-binding protein Der; Reviewed	95.67
PRK12736	394	elongation factor Tu; Reviewed	95.64
PLN03126	478	Elongation factor Tu; Provisional	95.63
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	95.51
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	95.44
cd03708	87	GTPBP_III Domain III of the GP-1 family of GTPase.	95.28
cd04105	203	SR_beta Signal recognition particle receptor, beta	95.02
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	94.97
PLN03127	447	Elongation factor Tu; Provisional	94.86
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	94.82
PRK12317	425	elongation factor 1-alpha; Reviewed	94.7
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	94.48
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	94.19
TIGR00485	394	EF-Tu translation elongation factor TU. This align	94.03
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	93.81
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	93.73
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	93.71
PRK12289	352	GTPase RsgA; Reviewed	93.56
PRK01889	356	GTPase RsgA; Reviewed	93.36
COG2229	187	Predicted GTPase [General function prediction only	93.26
PRK04213	201	GTP-binding protein; Provisional	93.14
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	93.03
KOG1144|consensus	1064		92.98
PRK00049	396	elongation factor Tu; Reviewed	92.95
COG1162	301	Predicted GTPases [General function prediction onl	92.85
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	92.81
KOG0465|consensus	721		92.78
PRK12735	396	elongation factor Tu; Reviewed	92.63
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	92.54
KOG0467|consensus	887		92.52
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	92.5
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	92.46
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	92.37
PRK03003	472	GTP-binding protein Der; Reviewed	92.06
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	91.4
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	91.3
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	91.26
KOG0464|consensus	753		91.09
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	91.05
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	90.78
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	90.61
PRK00089	292	era GTPase Era; Reviewed	90.15
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	89.74
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	89.66
PRK12288	347	GTPase RsgA; Reviewed	89.62
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	89.43
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	88.43
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	88.09
COG1084	346	Predicted GTPase [General function prediction only	87.68
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	87.61
KOG0468|consensus	971		87.33
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	87.1
COG0218	200	Predicted GTPase [General function prediction only	87.0
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	86.43
PRK00093	435	GTP-binding protein Der; Reviewed	84.74
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	84.46
COG1160	444	Predicted GTPases [General function prediction onl	83.69
PRK09563	287	rbgA GTPase YlqF; Reviewed	82.79
PRK13768	253	GTPase; Provisional	82.71
PTZ00141	446	elongation factor 1- alpha; Provisional	82.34
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	82.22
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	82.0
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	81.95
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	81.36

>KOG0466|consensus

Probab=100.00  E-value=5.2e-45  Score=332.50  Aligned_cols=118  Identities=78%  Similarity=1.173  Sum_probs=116.6

Q ss_pred             CCCccCCccccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccce
Q psy13818          1 VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAK   80 (207)
Q Consensus         1 vgt~~dp~l~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~K   80 (207)
                      |||++||||||||||||||+|+.|+||++|.||||+||||+|++                        |++|+++++++|
T Consensus       336 VGT~~DPtlcraDrlVGqVlG~~G~LP~if~elei~y~Llrrll------------------------gvrt~~~~k~~k  391 (466)
T KOG0466|consen  336 VGTKMDPTLCRADRLVGQVLGAVGTLPDIFTELEISYFLLRRLL------------------------GVRTKGDKKQAK  391 (466)
T ss_pred             eccccCcchhhhhHHHHHHHhhccCCccceeEEEeehhhhhHHh------------------------ccccccccccch
Confidence            79999999999999999999999999999999999999999999                        899999999999


Q ss_pred             eccCccCceEEEEeeccccceEEEEEecceEEEEeeCcccccCCcEEEEEEeecCcceeecc
Q psy13818         81 VQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEG  142 (207)
Q Consensus        81 v~~l~~~E~lmlniGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg  142 (207)
                      |++|.+||+||+||||+||||+|.++|+|++++.|+.|+|++.|+|+|+|||+..|||||||
T Consensus       392 v~kL~k~E~lmvNIGS~sTG~~v~~vk~d~~k~~Lt~P~CteigEkiAlSRrvekhWRLIGw  453 (466)
T KOG0466|consen  392 VSKLVKNEILMVNIGSTSTGGRVSAVKADMAKIQLTSPVCTEIGEKIALSRRVEKHWRLIGW  453 (466)
T ss_pred             hhhcccCcEEEEEecccccCceEEEEecceeeeEecCchhcccchhhhhhhhhhhheEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999995

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=5.3e-42  Score=313.17  Aligned_cols=115  Identities=47%  Similarity=0.873  Sum_probs=111.5

Q ss_pred             CCCccCCccccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccce
Q psy13818          1 VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAK   80 (207)
Q Consensus         1 vgt~~dp~l~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~K   80 (207)
                      |||+|||+|||||+|+|||+|+||+|||+|++++|+||||+|++                        |+     +++.|
T Consensus       296 vGT~lDP~ltKaD~L~G~V~G~pG~lPpv~~~~~ie~~LL~Rvv------------------------G~-----~~e~k  346 (415)
T COG5257         296 VGTKLDPTLTKADALVGQVVGKPGTLPPVWTSIRIEYHLLERVV------------------------GT-----KEELK  346 (415)
T ss_pred             EecccCcchhhhhhhccccccCCCCCCCceEEEEEEeeehhhhh------------------------Cc-----ccccc
Confidence            79999999999999999999999999999999999999999999                        77     67889


Q ss_pred             eccCccCceEEEEeeccccceEEEEEecceEEEEeeCcccccCCcEEEEEEeecCcceeec-ccc
Q psy13818         81 VQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTV  144 (207)
Q Consensus        81 v~~l~~~E~lmlniGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~  144 (207)
                      |+||+.||+||+||||++|+|+|+++++|.+++.|+.|+||+.|+|++||||+.+|||||| |++
T Consensus       347 vepik~~E~Lml~VGtatT~GvV~~~k~d~~ev~Lk~Pvcae~g~rvaisRri~~rWRLIG~G~i  411 (415)
T COG5257         347 VEPIKTNEVLMLNVGTATTVGVVTSAKKDEIEVKLKRPVCAEIGERVAISRRIGNRWRLIGYGTI  411 (415)
T ss_pred             cccccCCCeEEEEeecceeEEEEEEecCceEEEEeccceecCCCCEEEEEeeecceEEEEeEEEE
Confidence            9999999999999999999999999999999999999999999999999999999999999 444

>PF09173 eIF2_C: Initiation factor eIF2 gamma, C terminal; InterPro: IPR015256 This entry represents a domain which is found in the initiation factors eIF2 and EF-Tu, adopting a beta barrel structure with Greek key topology

Probab=99.97  E-value=1.3e-32  Score=209.36  Aligned_cols=87  Identities=49%  Similarity=0.909  Sum_probs=74.1

Q ss_pred             eEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceEEEEeeccccceEEEEEecc
Q psy13818         30 FIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKAD  109 (207)
Q Consensus        30 ~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lmlniGs~~t~g~V~~~~~D  109 (207)
                      |++|+|+||||+|++                        |++.    ++.|++||++||+||+||||++|+|+|+++++|
T Consensus         1 ~~~l~i~~~Ll~r~v------------------------g~~~----~~~kv~~i~~~E~LmlnIGsatt~G~V~~~k~d   52 (88)
T PF09173_consen    1 YTELEIEYHLLERVV------------------------GVKE----KEAKVEPIKKGEVLMLNIGSATTGGVVTSVKKD   52 (88)
T ss_dssp             EEEEEEEEEE-SSCS------------------------SSSS-----CCS-----TTEEEEEEETTEEEEEEEEEEETT
T ss_pred             CEEEEEEEEEehhhh------------------------Cccc----cceecccCCCCCEEEEEEccccccEEEEEEECC
Confidence            789999999999999                        7732    378999999999999999999999999999999


Q ss_pred             eEEEEeeCcccccCCcEEEEEEeecCcceeec-ccc
Q psy13818        110 LAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTV  144 (207)
Q Consensus       110 la~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~  144 (207)
                      .+++.|+.|+|++.|+|++|||++.+|||||| |++
T Consensus        53 ~~~v~L~~Pvc~~~g~rvaiSRri~~rWRLIG~G~I   88 (88)
T PF09173_consen   53 MAEVELKKPVCAEKGERVAISRRIGNRWRLIGWGII   88 (88)
T ss_dssp             EEEEEEEEEEE-STTSEEEEEEEETTSEEEEEEEEE
T ss_pred             EEEEEecCCeEcCcCCeeeeehhccCeEEEEEEEeC
Confidence            99999999999999999999999999999999 543

It is required for formation of the ternary complex with GTP and initiator tRNA []. ; PDB: 1S0U_A 1KK1_A 1KK0_A 1KK2_A 1KJZ_A 1KK3_A 2D74_A 2DCU_A 3P3M_A 3V11_A ....

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=1.6e-25  Score=205.26  Aligned_cols=133  Identities=38%  Similarity=0.540  Sum_probs=108.7

Q ss_pred             eeeeeecccccccCCcccceeccCccCceEEEEeeccccceEEEEEe-cceEEEEeeCcccccCCcEEEEEEeec-----
Q psy13818         61 YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATK-ADLAKISLTNPVCTEVNEKIALSRRVE-----  134 (207)
Q Consensus        61 ~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lmlniGs~~t~g~V~~~~-~Dla~i~L~~Pvc~~~G~kiaIsR~V~-----  134 (207)
                      -||.|||+|+.|++-+||     |++|=++-|  |=+-+.  +..-- -+--..|...|.|-+||....+.|+++     
T Consensus        24 tTlv~AlsGvwT~~hseE-----lkRgitIkL--GYAd~~--i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaP   94 (415)
T COG5257          24 TTLTKALSGVWTDRHSEE-----LKRGITIKL--GYADAK--IYKCPECYRPECYTTEPKCPNCGAETELVRRVSFVDAP   94 (415)
T ss_pred             hhheehhhceeeechhHH-----HhcCcEEEe--ccccCc--eEeCCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCC
Confidence            378999999999877766     344433433  544332  11111 011147889999999999888888775     


Q ss_pred             Ccceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818        135 KHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       135 gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~l  206 (207)
                      ||+-|+     .+|++||+        |+|||.||||||+|||.+++++|++|+||++||+|||+.+++.+.|+||++|+
T Consensus        95 GHe~LM-----ATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~y~qIk~Fv  169 (415)
T COG5257          95 GHETLM-----ATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALENYEQIKEFV  169 (415)
T ss_pred             chHHHH-----HHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHHHHHHHHHHHHHHh
Confidence            999999     99999998        99999999999999999999999999999999999999999999999999998


Q ss_pred             C
Q psy13818        207 Q  207 (207)
Q Consensus       207 ~  207 (207)
                      |
T Consensus       170 k  170 (415)
T COG5257         170 K  170 (415)
T ss_pred             c
Confidence            6

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.79  E-value=5.5e-20  Score=170.32  Aligned_cols=111  Identities=22%  Similarity=0.278  Sum_probs=96.0

Q ss_pred             Ccccccc-cceeeeeeecccccccCCcccceeccCccCceEEEEeeccccceEEEEEecceEEEEeeCcccccCCcEEEE
Q psy13818         51 DKKGAKL-EISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIAL  129 (207)
Q Consensus        51 ~~~~~~~-~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lmlniGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~kiaI  129 (207)
                      +++|-.+ .+-|.|+-+=+       + .++-+.|+      |                |.|+.||..+.      |-.|
T Consensus        46 ~~~~t~g~~~D~ALLvDGL-------~-AEREQGIT------I----------------DVAYRyFsT~K------RkFI   89 (431)
T COG2895          46 KRKGTQGEKIDLALLVDGL-------E-AEREQGIT------I----------------DVAYRYFSTEK------RKFI   89 (431)
T ss_pred             ccccCCCCccchhhhhhhh-------H-HHHhcCce------E----------------EEEeeeccccc------ceEE
Confidence            3457776 77887776544       2 22567777      7                99999999985      8888


Q ss_pred             EEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHH
Q psy13818        130 SRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQ  201 (207)
Q Consensus       130 sR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~e  201 (207)
                      +-+-|||+.|.     |||++||+        |||.+|+ .+|||+|..|+++|||+|+||++||||||+|+  +++|++
T Consensus        90 iADTPGHeQYT-----RNMaTGASTadlAIlLVDAR~Gv-l~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy~--e~~F~~  161 (431)
T COG2895          90 IADTPGHEQYT-----RNMATGASTADLAILLVDARKGV-LEQTRRHSFIASLLGIRHVVVAVNKMDLVDYS--EEVFEA  161 (431)
T ss_pred             EecCCcHHHHh-----hhhhcccccccEEEEEEecchhh-HHHhHHHHHHHHHhCCcEEEEEEeeecccccC--HHHHHH
Confidence            99999999999     99999999        9999998 99999999999999999999999999999999  789999


Q ss_pred             HHhh
Q psy13818        202 IVKF  205 (207)
Q Consensus       202 I~~~  205 (207)
                      |++-
T Consensus       162 I~~d  165 (431)
T COG2895         162 IVAD  165 (431)
T ss_pred             HHHH
Confidence            9863

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.77  E-value=2e-19  Score=169.32  Aligned_cols=131  Identities=44%  Similarity=0.623  Sum_probs=95.8

Q ss_pred             eeeeecccccccCCcccceeccCccCceEEEEeeccccc-------eEEEEEecceEEEEeeCcccccCC------cEEE
Q psy13818         62 HLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTG-------GRVLATKADLAKISLTNPVCTEVN------EKIA  128 (207)
Q Consensus        62 ~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lmlniGs~~t~-------g~V~~~~~Dla~i~L~~Pvc~~~G------~kia  128 (207)
                      +|+++|||..++..++| |.+.++      +..|-+...       +.+...... ..-.-..+.|..++      .++.
T Consensus        49 tLv~aLtg~~~~r~~~E-~~rGiT------i~lGfa~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~  120 (460)
T PTZ00327         49 TVVKALSGVKTVRFKRE-KVRNIT------IKLGYANAKIYKCPKCPRPTCYQSY-GSSKPDNPPCPGCGHKMTLKRHVS  120 (460)
T ss_pred             HHHHHHhCCCcccchhh-HHhCCc------hhccccccccccCcccCCccccccc-CCCcccccccccccccccccceEe
Confidence            78999999998877654 788888      644433321       001000000 00000023333333      2677


Q ss_pred             EEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHH
Q psy13818        129 LSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHE  200 (207)
Q Consensus       129 IsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~  200 (207)
                      ++ +.|||++|+     +||++|++        |||++|++||||+||+.+++++|++++|||+||||++++++.+++++
T Consensus       121 ~I-DtPGH~~fi-----~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~~~~~~~  194 (460)
T PTZ00327        121 FV-DCPGHDILM-----ATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQAQDQYE  194 (460)
T ss_pred             ee-eCCCHHHHH-----HHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHHHHHHHH
Confidence            76 999999999     99999987        89999866999999999999999999999999999999888899999


Q ss_pred             HHHhhh
Q psy13818        201 QIVKFV  206 (207)
Q Consensus       201 eI~~~l  206 (207)
                      +|++++
T Consensus       195 ei~~~l  200 (460)
T PTZ00327        195 EIRNFV  200 (460)
T ss_pred             HHHHHH
Confidence            999876

>KOG0460|consensus

Probab=99.76  E-value=9.5e-19  Score=161.90  Aligned_cols=86  Identities=23%  Similarity=0.375  Sum_probs=76.3

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeE
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHI  180 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~i  180 (207)
                      +.+.+.+..+     ....+.. +-|||-+||     ||||+||+        |+|++| ||||||||++++++.||+|+
T Consensus       106 n~aHveYeTa-----~RhYaH~-DCPGHADYI-----KNMItGaaqMDGaILVVaatDG-~MPQTrEHlLLArQVGV~~i  173 (449)
T KOG0460|consen  106 NAAHVEYETA-----KRHYAHT-DCPGHADYI-----KNMITGAAQMDGAILVVAATDG-PMPQTREHLLLARQVGVKHI  173 (449)
T ss_pred             eeeeeeeecc-----ccccccC-CCCchHHHH-----HHhhcCccccCceEEEEEcCCC-CCcchHHHHHHHHHcCCceE
Confidence            5678877776     3456665 889999999     99999998        889999 59999999999999999999


Q ss_pred             EEEEecCCCC-ChhhHHHHHHHHHhhh
Q psy13818        181 IILQNKIDLV-KEGQANEQHEQIVKFV  206 (207)
Q Consensus       181 IV~vNK~DlV-~~~~~~~~~~eI~~~l  206 (207)
                      ||++||.|+| |++.++.+.-||+++|
T Consensus       174 vvfiNKvD~V~d~e~leLVEmE~RElL  200 (449)
T KOG0460|consen  174 VVFINKVDLVDDPEMLELVEMEIRELL  200 (449)
T ss_pred             EEEEecccccCCHHHHHHHHHHHHHHH
Confidence            9999999999 6778888889999987

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.75  E-value=6.5e-19  Score=160.80  Aligned_cols=87  Identities=18%  Similarity=0.325  Sum_probs=77.0

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeE
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHI  180 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~i  180 (207)
                      +.+.+.+..+     ...++.. +.|||.+||     ||||+||+        |+|++| |||||+||++++++.|++++
T Consensus        64 ntahveyet~-----~rhyahV-DcPGHaDYv-----KNMItgAaqmDgAILVVsA~dG-pmPqTrEHiLlarqvGvp~i  131 (394)
T COG0050          64 NTAHVEYETA-----NRHYAHV-DCPGHADYV-----KNMITGAAQMDGAILVVAATDG-PMPQTREHILLARQVGVPYI  131 (394)
T ss_pred             ccceeEEecC-----CceEEec-cCCChHHHH-----HHHhhhHHhcCccEEEEEcCCC-CCCcchhhhhhhhhcCCcEE
Confidence            5677777765     4567876 999999999     99999998        889999 69999999999999999999


Q ss_pred             EEEEecCCCCC-hhhHHHHHHHHHhhhC
Q psy13818        181 IILQNKIDLVK-EGQANEQHEQIVKFVQ  207 (207)
Q Consensus       181 IV~vNK~DlV~-~~~~~~~~~eI~~~l~  207 (207)
                      ||++||+|+|+ ++.++.+..|++++|.
T Consensus       132 vvflnK~Dmvdd~ellelVemEvreLLs  159 (394)
T COG0050         132 VVFLNKVDMVDDEELLELVEMEVRELLS  159 (394)
T ss_pred             EEEEecccccCcHHHHHHHHHHHHHHHH
Confidence            99999999998 6677888899999873

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.73  E-value=4.7e-18  Score=159.76  Aligned_cols=110  Identities=25%  Similarity=0.292  Sum_probs=98.8

Q ss_pred             eeeeecccccccCCcccceeccCccCceEEEEeeccccceEEEEEecceEEEEeeCcccccCCcEEEEEEeecCcceeec
Q psy13818         62 HLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIE  141 (207)
Q Consensus        62 ~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lmlniGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig  141 (207)
                      +|+|+++|..++..+|+ |.+.++      +                |+.+.|++.|    ++ ++.++ ++|||.+|| 
T Consensus        15 ~L~~altg~~~d~l~Ee-kKRG~T------i----------------Dlg~~y~~~~----d~-~~~fI-Dvpgh~~~i-   64 (447)
T COG3276          15 TLLKALTGGVTDRLPEE-KKRGIT------I----------------DLGFYYRKLE----DG-VMGFI-DVPGHPDFI-   64 (447)
T ss_pred             hhhhhhcccccccchhh-hhcCce------E----------------eeeeEeccCC----CC-ceEEe-eCCCcHHHH-
Confidence            78999999999988766 667777      6                9999999998    45 78888 999999999 


Q ss_pred             ccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818        142 GTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       142 g~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~l  206 (207)
                          +||++|+.        |+++||. ||||.||++++++||++|.|||+||+|++++.+.++..++|.+.+
T Consensus        65 ----~~miag~~~~d~alLvV~~deGl-~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l  132 (447)
T COG3276          65 ----SNLLAGLGGIDYALLVVAADEGL-MAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADL  132 (447)
T ss_pred             ----HHHHhhhcCCceEEEEEeCccCc-chhhHHHHHHHHhcCCCceEEEEeccccccHHHHHHHHHHHHhhc
Confidence                99999976        8999996 999999999999999999999999999999998888888887654

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.66  E-value=2e-16  Score=148.20  Aligned_cols=85  Identities=22%  Similarity=0.304  Sum_probs=74.1

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCC------CCCchHHHHHHHHH
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESC------PQPQTSEHLAAIEI  174 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~------~~pQT~EHl~il~~  174 (207)
                      |.+..++..|.     -++.|. +-|||.+|+     +||++||+        |||+.|-      ++||||||+.|++.
T Consensus        74 ~~~~~~fet~k-----~~~tIi-DaPGHrdFv-----knmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~t  142 (428)
T COG5256          74 DVAHSKFETDK-----YNFTII-DAPGHRDFV-----KNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLART  142 (428)
T ss_pred             EEEEEEeecCC-----ceEEEe-eCCchHHHH-----HHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHh
Confidence            67788887763     257777 999999999     99999998        8888761      49999999999999


Q ss_pred             cCCCeEEEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818        175 MKLKHIIILQNKIDLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       175 lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~l  206 (207)
                      |||+|+||++||||+++|+  +++|++|++-+
T Consensus       143 lGi~~lIVavNKMD~v~wd--e~rf~ei~~~v  172 (428)
T COG5256         143 LGIKQLIVAVNKMDLVSWD--EERFEEIVSEV  172 (428)
T ss_pred             cCCceEEEEEEcccccccC--HHHHHHHHHHH
Confidence            9999999999999999976  78999988754

>KOG0466|consensus

Probab=99.63  E-value=2.2e-16  Score=145.37  Aligned_cols=85  Identities=65%  Similarity=0.897  Sum_probs=75.7

Q ss_pred             cccccCCc--EEEEEEeec-----Ccceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEE
Q psy13818        118 PVCTEVNE--KIALSRRVE-----KHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIII  182 (207)
Q Consensus       118 Pvc~~~G~--kiaIsR~V~-----gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV  182 (207)
                      |-|..+|.  +..+.|.++     ||--|+     .+|+.||+        |++||.||||||.|||+..++|.++|+++
T Consensus       110 ~~c~~~g~~~~~klvRHVSfVDCPGHDiLM-----aTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~Lkhiii  184 (466)
T KOG0466|consen  110 PPCDRPGCEGKMKLVRHVSFVDCPGHDILM-----ATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIII  184 (466)
T ss_pred             CCcccCCCCCceEEEEEEEeccCCchHHHH-----HHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEE
Confidence            44555444  588888774     888888     99999988        89999999999999999999999999999


Q ss_pred             EEecCCCCChhhHHHHHHHHHhhhC
Q psy13818        183 LQNKIDLVKEGQANEQHEQIVKFVQ  207 (207)
Q Consensus       183 ~vNK~DlV~~~~~~~~~~eI~~~l~  207 (207)
                      ++||+||+.++++.+.|++|.+|++
T Consensus       185 lQNKiDli~e~~A~eq~e~I~kFi~  209 (466)
T KOG0466|consen  185 LQNKIDLIKESQALEQHEQIQKFIQ  209 (466)
T ss_pred             EechhhhhhHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999974

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.62  E-value=4.4e-16  Score=150.92  Aligned_cols=111  Identities=22%  Similarity=0.300  Sum_probs=90.7

Q ss_pred             eeeeecccccccCCcccceeccCccCceEEEEeeccccceEEEEEecceEEEEeeCcccccCCcEEEEEEeecCcceeec
Q psy13818         62 HLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIE  141 (207)
Q Consensus        62 ~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lmlniGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig  141 (207)
                      +|+++|||.+++..+++ +.+.++      +                |+++.++..|    .|.++.++ ++|||.+|+ 
T Consensus        15 tLi~aLtg~~~dr~~eE-~~rGiT------I----------------~l~~~~~~~~----~g~~i~~I-DtPGhe~fi-   65 (614)
T PRK10512         15 TLLQAITGVNADRLPEE-KKRGMT------I----------------DLGYAYWPQP----DGRVLGFI-DVPGHEKFL-   65 (614)
T ss_pred             HHHHHHhCCCCccchhc-ccCCce------E----------------EeeeEEEecC----CCcEEEEE-ECCCHHHHH-
Confidence            56788889877665544 445555      4                4556666655    56778887 999999999 


Q ss_pred             ccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818        142 GTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       142 g~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~l  206 (207)
                          +||++|+.        ||+++|+ ||||+||+.+++.+|++++|||+||||++++++.++..+++++++
T Consensus        66 ----~~m~~g~~~~D~~lLVVda~eg~-~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~~~v~~ei~~~l  133 (614)
T PRK10512         66 ----SNMLAGVGGIDHALLVVACDDGV-MAQTREHLAILQLTGNPMLTVALTKADRVDEARIAEVRRQVKAVL  133 (614)
T ss_pred             ----HHHHHHhhcCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHHHHHHHHHHHHH
Confidence                99999866        8999996 999999999999999999999999999999887777788887765

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.61  E-value=1.5e-15  Score=143.10  Aligned_cols=121  Identities=62%  Similarity=1.010  Sum_probs=107.1

Q ss_pred             CCccCCccccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCccccee
Q psy13818          2 GTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKV   81 (207)
Q Consensus         2 gt~~dp~l~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv   81 (207)
                      .+++||.+.+.|-..|+|++.+|++|+++.++++++++|++.+                        |...+++++..|.
T Consensus       329 ~l~ld~~v~~~dv~rG~Vl~~~~~~~~~~~~~~a~v~~L~~~~------------------------~~~~~~~~~~~~~  384 (460)
T PTZ00327        329 GTTIDPTLTRADRLVGQVLGYPGKLPEVYAEIEIQYYLLRRLL------------------------GVKSQDGKKATKV  384 (460)
T ss_pred             EeccCCCcchhhcccccEEEcCCCCCceeEEEEEEEEEecccc------------------------cccccccccccCC
Confidence            4578999999999999999999999999999999999998877                        5543333333356


Q ss_pred             ccCccCceEEEEeeccccceEEEEEecc-eEEEEeeCcccccCCcEEEEEEeecCcceeec-ccccc
Q psy13818         82 QKLTRNEVLLVNIGSLSTGGRVLATKAD-LAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVTT  146 (207)
Q Consensus        82 ~~l~~~E~lmlniGs~~t~g~V~~~~~D-la~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~~  146 (207)
                      .+|+.|+.+++.+||..+.|+|..+++| .+++.|..|+|++.|+|+.|+|++..+||+|| |+|..
T Consensus       385 ~~l~~g~~~~l~~gt~~~~~~i~~i~~~~~~~l~l~~P~~~~~gdr~ilr~~~~~~~~tig~G~i~~  451 (460)
T PTZ00327        385 AKLKKGESLMINIGSTTTGGRVVGIKDDGIAKLELTTPVCTSVGEKIALSRRVDKHWRLIGWGTIRK  451 (460)
T ss_pred             cccCCCCEEEEEecccEEEEEEEEeCCCeEEEEEECccEeccCCCEEEEEeccCCCcEEEEEEEEcC
Confidence            8999999999999999999999999999 99999999999999999999999899999999 76664

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.54  E-value=1e-14  Score=133.97  Aligned_cols=113  Identities=41%  Similarity=0.773  Sum_probs=103.1

Q ss_pred             CccCCccccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceec
Q psy13818          3 TKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQ   82 (207)
Q Consensus         3 t~~dp~l~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~   82 (207)
                      +++||.+.+.|-+.|+|++.+++.|++..++++++++|++..                        |.     .+..+..
T Consensus       292 l~~~~~i~~~dv~~G~vl~~~~~~~~~~~~f~a~i~~l~~~~------------------------~~-----~~~~~~~  342 (406)
T TIGR03680       292 TKLDPALTKADALAGQVVGKPGTLPPVWESLELEVHLLERVV------------------------GT-----EEELKVE  342 (406)
T ss_pred             eccCCCCCHHHcccccEEEcCCCCCCceeEEEEEEEEEeccc------------------------Cc-----ccccccc
Confidence            456889999999999999999999999999999999998876                        44     2335678


Q ss_pred             cCccCceEEEEeeccccceEEEEEecceEEEEeeCcccccCCcEEEEEEeecCcceeec-ccc
Q psy13818         83 KLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTV  144 (207)
Q Consensus        83 ~l~~~E~lmlniGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~  144 (207)
                      +|+.|+.+++.+||..+.|+|..+.+|.+.+.|..|+|...|+|+.+||+..++||+|| |.+
T Consensus       343 ~i~~g~~~~l~~gt~~~~~~v~~~~~~~~~l~l~~p~~~~~g~r~~~~~~~~~~~~~~g~g~~  405 (406)
T TIGR03680       343 PIKTGEVLMLNVGTATTVGVVTSARKDEIEVKLKRPVCAEEGDRVAISRRVGGRWRLIGYGII  405 (406)
T ss_pred             cCCCCCEEEEEEccceEEEEEEEcCCcEEEEEECCcEEcCCCCEEEEEEecCCceEEEEEEEe
Confidence            99999999999999999999999999999999999999999999999999999999999 544

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>KOG0458|consensus

Probab=99.53  E-value=2e-14  Score=139.03  Aligned_cols=85  Identities=21%  Similarity=0.323  Sum_probs=70.2

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCC-----C-CCCchHHHHHHHHH
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNES-----C-PQPQTSEHLAAIEI  174 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg-----~-~~pQT~EHl~il~~  174 (207)
                      |.+..++..+     -..+.|. +.|||-.||     +||++|++        |||+-|     + +-.||+||+.+++.
T Consensus       244 ~v~~~~fes~-----~~~~tli-DaPGhkdFi-----~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~  312 (603)
T KOG0458|consen  244 DVKTTWFESK-----SKIVTLI-DAPGHKDFI-----PNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRS  312 (603)
T ss_pred             EeeeEEEecC-----ceeEEEe-cCCCccccc-----hhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHH
Confidence            5556666644     3456666 999999999     99999988        777632     2 57999999999999


Q ss_pred             cCCCeEEEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818        175 MKLKHIIILQNKIDLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       175 lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~l  206 (207)
                      |||.|+||++||||+|+|+  ++||++|+.-|
T Consensus       313 Lgi~qlivaiNKmD~V~Ws--q~RF~eIk~~l  342 (603)
T KOG0458|consen  313 LGISQLIVAINKMDLVSWS--QDRFEEIKNKL  342 (603)
T ss_pred             cCcceEEEEeecccccCcc--HHHHHHHHHHH
Confidence            9999999999999999888  78898887643

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.47  E-value=6.4e-14  Score=134.88  Aligned_cols=86  Identities=22%  Similarity=0.364  Sum_probs=70.7

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeE
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHI  180 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~i  180 (207)
                      |..+.++..+     +.++.|. ++|||.+|+     +||++|+.        ||+++|. ||||+||+.+++.+|++|+
T Consensus        39 d~~~~~~~~~-----~~~v~~i-DtPGhe~f~-----~~~~~g~~~aD~aILVVDa~~G~-~~qT~ehl~il~~lgi~~i  106 (581)
T TIGR00475        39 DLGFAYFPLP-----DYRLGFI-DVPGHEKFI-----SNAIAGGGGIDAALLVVDADEGV-MTQTGEHLAVLDLLGIPHT  106 (581)
T ss_pred             EeEEEEEEeC-----CEEEEEE-ECCCHHHHH-----HHHHhhhccCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeE
Confidence            4445555444     3567776 999999999     99998866        8999996 9999999999999999999


Q ss_pred             EEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818        181 IILQNKIDLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       181 IV~vNK~DlV~~~~~~~~~~eI~~~l  206 (207)
                      |||+||||+++.++.+...+++++++
T Consensus       107 IVVlNK~Dlv~~~~~~~~~~ei~~~l  132 (581)
T TIGR00475       107 IVVITKADRVNEEEIKRTEMFMKQIL  132 (581)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999876666666676654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.46  E-value=5.7e-14  Score=129.06  Aligned_cols=77  Identities=44%  Similarity=0.678  Sum_probs=68.1

Q ss_pred             CcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhH
Q psy13818        124 NEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQA  195 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~  195 (207)
                      +.++.+. +.|||.+|+     +||++|++        |||++|++++||+||+.+++.+|++++||++||+|++++++.
T Consensus        79 ~~~i~li-DtPGh~~f~-----~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~~~~  152 (406)
T TIGR03680        79 LRRVSFV-DAPGHETLM-----ATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSKEKA  152 (406)
T ss_pred             ccEEEEE-ECCCHHHHH-----HHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCHHHH
Confidence            3567776 999999999     99999964        999999779999999999999999999999999999988777


Q ss_pred             HHHHHHHHhhh
Q psy13818        196 NEQHEQIVKFV  206 (207)
Q Consensus       196 ~~~~~eI~~~l  206 (207)
                      .+.++++++++
T Consensus       153 ~~~~~~i~~~l  163 (406)
T TIGR03680       153 LENYEEIKEFV  163 (406)
T ss_pred             HHHHHHHHhhh
Confidence            77788888765

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PLN03126 Elongation factor Tu; Provisional

Probab=99.42  E-value=1.6e-13  Score=129.89  Aligned_cols=86  Identities=16%  Similarity=0.282  Sum_probs=70.3

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeE
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHI  180 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~i  180 (207)
                      |.++.++..     .+.++.++ +.|||.+|+     +||++|+.        |||.+|. +|||+||+.++..+|++++
T Consensus       133 ~~~~~~~~~-----~~~~i~li-DtPGh~~f~-----~~~~~g~~~aD~ailVVda~~G~-~~qt~e~~~~~~~~gi~~i  200 (478)
T PLN03126        133 NTATVEYET-----ENRHYAHV-DCPGHADYV-----KNMITGAAQMDGAILVVSGADGP-MPQTKEHILLAKQVGVPNM  200 (478)
T ss_pred             EEEEEEEec-----CCcEEEEE-ECCCHHHHH-----HHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeE
Confidence            556666543     46688887 999999999     99999876        8999996 9999999999999999999


Q ss_pred             EEEEecCCCCChhhH-HHHHHHHHhhh
Q psy13818        181 IILQNKIDLVKEGQA-NEQHEQIVKFV  206 (207)
Q Consensus       181 IV~vNK~DlV~~~~~-~~~~~eI~~~l  206 (207)
                      ||++||||+++.++. +...++++++|
T Consensus       201 IvvvNK~Dl~~~~~~~~~i~~~i~~~l  227 (478)
T PLN03126        201 VVFLNKQDQVDDEELLELVELEVRELL  227 (478)
T ss_pred             EEEEecccccCHHHHHHHHHHHHHHHH
Confidence            999999999985433 33345677665

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.39  E-value=5e-13  Score=125.07  Aligned_cols=79  Identities=16%  Similarity=0.223  Sum_probs=64.1

Q ss_pred             cCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCC------CCchHHHHHHHHHcCCCeEEEEEecC
Q psy13818        122 EVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCP------QPQTSEHLAAIEIMKLKHIIILQNKI  187 (207)
Q Consensus       122 ~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~------~pQT~EHl~il~~lGI~~iIV~vNK~  187 (207)
                      +.+.++.|+ +.|||.+|+     +||++|++        |||.+|+-      .+||+||+.+++.+|++++|||+|||
T Consensus        82 ~~~~~i~lI-DtPGh~~f~-----~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~vNKm  155 (446)
T PTZ00141         82 TPKYYFTII-DAPGHRDFI-----KNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCINKM  155 (446)
T ss_pred             cCCeEEEEE-ECCChHHHH-----HHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEEEcc
Confidence            346688887 999999999     99999977        89999861      48999999999999999999999999


Q ss_pred             C--CCCh--hhHHHHHHHHHhhh
Q psy13818        188 D--LVKE--GQANEQHEQIVKFV  206 (207)
Q Consensus       188 D--lV~~--~~~~~~~~eI~~~l  206 (207)
                      |  ++++  ++.++..++|++++
T Consensus       156 D~~~~~~~~~~~~~i~~~i~~~l  178 (446)
T PTZ00141        156 DDKTVNYSQERYDEIKKEVSAYL  178 (446)
T ss_pred             ccccchhhHHHHHHHHHHHHHHH
Confidence            9  5544  34455555665554

>PLN03127 Elongation factor Tu; Provisional

Probab=99.38  E-value=5.1e-13  Score=125.27  Aligned_cols=86  Identities=15%  Similarity=0.271  Sum_probs=68.3

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeE
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHI  180 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~i  180 (207)
                      |.+...+..     .+.++.++ +.|||.+|+     +||++|+.        |||++|. ++||+||+.+++.+|++++
T Consensus       113 ~~~~~~~~~-----~~~~i~~i-DtPGh~~f~-----~~~~~g~~~aD~allVVda~~g~-~~qt~e~l~~~~~~gip~i  180 (447)
T PLN03127        113 ATAHVEYET-----AKRHYAHV-DCPGHADYV-----KNMITGAAQMDGGILVVSAPDGP-MPQTKEHILLARQVGVPSL  180 (447)
T ss_pred             eeeEEEEcC-----CCeEEEEE-ECCCccchH-----HHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHHcCCCeE
Confidence            445555544     35577777 999999999     99999866        8999996 9999999999999999999


Q ss_pred             EEEEecCCCCChhhHHHHH-HHHHhhh
Q psy13818        181 IILQNKIDLVKEGQANEQH-EQIVKFV  206 (207)
Q Consensus       181 IV~vNK~DlV~~~~~~~~~-~eI~~~l  206 (207)
                      ||++||||++++++..+.. +++++++
T Consensus       181 IvviNKiDlv~~~~~~~~i~~~i~~~l  207 (447)
T PLN03127        181 VVFLNKVDVVDDEELLELVEMELRELL  207 (447)
T ss_pred             EEEEEeeccCCHHHHHHHHHHHHHHHH
Confidence            9999999999755433333 4666554

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.38  E-value=7.1e-13  Score=124.19  Aligned_cols=85  Identities=19%  Similarity=0.206  Sum_probs=66.5

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCC------CCchHHHHHHHHH
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCP------QPQTSEHLAAIEI  174 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~------~pQT~EHl~il~~  174 (207)
                      |.+..++..     .+.++.|+ +.|||.+|+     +||++|++        |||++|..      .+||+||+.+++.
T Consensus        74 ~~~~~~~~~-----~~~~i~li-DtPGh~df~-----~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~  142 (447)
T PLN00043         74 DIALWKFET-----TKYYCTVI-DAPGHRDFI-----KNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFT  142 (447)
T ss_pred             EEEEEEecC-----CCEEEEEE-ECCCHHHHH-----HHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHH
Confidence            344555544     35678887 999999999     99999977        88988742      3999999999999


Q ss_pred             cCCCeEEEEEecCCCCChhhHHHHHHHHHh
Q psy13818        175 MKLKHIIILQNKIDLVKEGQANEQHEQIVK  204 (207)
Q Consensus       175 lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~  204 (207)
                      +|++++|||+||||+++.++.+++|++|.+
T Consensus       143 ~gi~~iIV~vNKmD~~~~~~~~~~~~~i~~  172 (447)
T PLN00043        143 LGVKQMICCCNKMDATTPKYSKARYDEIVK  172 (447)
T ss_pred             cCCCcEEEEEEcccCCchhhhHHHHHHHHH
Confidence            999999999999999865444455544433

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.32  E-value=2e-12  Score=118.20  Aligned_cols=77  Identities=17%  Similarity=0.274  Sum_probs=64.1

Q ss_pred             CCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhh
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQ  194 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~  194 (207)
                      .+.++.|. +.|||.+|+     +||+.|+.        |||++|. ++||+||+.++..+|++++|||+||||++++++
T Consensus        73 ~~~~~~li-DtpGh~~f~-----~~~~~~~~~~D~~ilVvda~~g~-~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~  145 (394)
T TIGR00485        73 ENRHYAHV-DCPGHADYV-----KNMITGAAQMDGAILVVSATDGP-MPQTREHILLARQVGVPYIVVFLNKCDMVDDEE  145 (394)
T ss_pred             CCEEEEEE-ECCchHHHH-----HHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCEEEEEEEecccCCHHH
Confidence            35578877 999999999     99988875        8999996 999999999999999999999999999997553


Q ss_pred             H-HHHHHHHHhhh
Q psy13818        195 A-NEQHEQIVKFV  206 (207)
Q Consensus       195 ~-~~~~~eI~~~l  206 (207)
                      . +...+++++++
T Consensus       146 ~~~~~~~~i~~~l  158 (394)
T TIGR00485       146 LLELVEMEVRELL  158 (394)
T ss_pred             HHHHHHHHHHHHH
Confidence            3 33345676665

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.29  E-value=4.7e-12  Score=116.57  Aligned_cols=73  Identities=18%  Similarity=0.273  Sum_probs=62.9

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeE
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHI  180 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~i  180 (207)
                      |.++.++..+     +.++.|+ +.|||.+|+     +||++|+.        |||.+|. +|||+||+.+++.+|++++
T Consensus        69 d~~~~~~~~~-----~~~~~li-DtPGh~~f~-----~~~~~~~~~aD~allVVda~~G~-~~qt~~~~~~~~~~~~~~i  136 (406)
T TIGR02034        69 DVAYRYFSTD-----KRKFIVA-DTPGHEQYT-----RNMATGASTADLAVLLVDARKGV-LEQTRRHSYIASLLGIRHV  136 (406)
T ss_pred             EeeeEEEccC-----CeEEEEE-eCCCHHHHH-----HHHHHHHhhCCEEEEEEECCCCC-ccccHHHHHHHHHcCCCcE
Confidence            5666666543     5578877 999999999     99988866        8999996 9999999999999999999


Q ss_pred             EEEEecCCCCChh
Q psy13818        181 IILQNKIDLVKEG  193 (207)
Q Consensus       181 IV~vNK~DlV~~~  193 (207)
                      |||+||||+++++
T Consensus       137 ivviNK~D~~~~~  149 (406)
T TIGR02034       137 VLAVNKMDLVDYD  149 (406)
T ss_pred             EEEEEecccccch
Confidence            9999999998754

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.28  E-value=7.4e-12  Score=115.75  Aligned_cols=110  Identities=40%  Similarity=0.745  Sum_probs=99.7

Q ss_pred             cCCccccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccC
Q psy13818          5 IEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKL   84 (207)
Q Consensus         5 ~dp~l~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l   84 (207)
                      +|+.+.+.|-..|+|++.+++.|++..+++.+..+|++..                        |.     +++.+-.+|
T Consensus       299 ~~~~i~~~~i~~G~vl~~~~~~~~~~~~f~a~v~~l~~~~------------------------~~-----~~~~~~~~i  349 (411)
T PRK04000        299 LDPSLTKADALAGSVAGKPGTLPPVWESLTIEVHLLERVV------------------------GT-----KEELKVEPI  349 (411)
T ss_pred             cCCCCCHHHccCccEEEcCCCCCCceEEEEEEEEEEEhhc------------------------Cc-----cccccCCCC
Confidence            4667788888999999999999999999999999988765                        33     445567899


Q ss_pred             ccCceEEEEeeccccceEEEEEecceEEEEeeCcccccCCcEEEEEEeecCcceeec-cc
Q psy13818         85 TRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GT  143 (207)
Q Consensus        85 ~~~E~lmlniGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~  143 (207)
                      +.|...++.+|+..+.|+|..+..|.+.+.|..|+|...|+|+.|+|+..+|||+|| |.
T Consensus       350 ~~g~~~~l~~~t~~~~~~i~~i~~~~~~~~l~~p~~~~~g~r~~~~~~~~~~~~~~~~~~  409 (411)
T PRK04000        350 KTGEPLMLNVGTATTVGVVTSARKDEAEVKLKRPVCAEEGDRVAISRRVGGRWRLIGYGI  409 (411)
T ss_pred             CCCCEEEEEEeccEEEEEEEEcCCcEEEEEECCcEecCCCCEEEEEEecCCcEEEEEEEE
Confidence            999999999999999999999999999999999999999999999999999999999 44

>PRK12736 elongation factor Tu; Reviewed

Probab=99.25  E-value=1e-11  Score=113.82  Aligned_cols=77  Identities=16%  Similarity=0.258  Sum_probs=64.0

Q ss_pred             CCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhh
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQ  194 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~  194 (207)
                      .+.++.++ +.|||.+|+     +||++|+.        ||+++|. +|||+||+.++..+|++++|||+||||+++.++
T Consensus        73 ~~~~i~~i-DtPGh~~f~-----~~~~~~~~~~d~~llVvd~~~g~-~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~  145 (394)
T PRK12736         73 EKRHYAHV-DCPGHADYV-----KNMITGAAQMDGAILVVAATDGP-MPQTREHILLARQVGVPYLVVFLNKVDLVDDEE  145 (394)
T ss_pred             CCcEEEEE-ECCCHHHHH-----HHHHHHHhhCCEEEEEEECCCCC-chhHHHHHHHHHHcCCCEEEEEEEecCCcchHH
Confidence            35577777 999999999     99998875        8999996 999999999999999999999999999996543


Q ss_pred             HH-HHHHHHHhhh
Q psy13818        195 AN-EQHEQIVKFV  206 (207)
Q Consensus       195 ~~-~~~~eI~~~l  206 (207)
                      .. ...+++++++
T Consensus       146 ~~~~i~~~i~~~l  158 (394)
T PRK12736        146 LLELVEMEVRELL  158 (394)
T ss_pred             HHHHHHHHHHHHH
Confidence            33 3445777664

>CHL00071 tufA elongation factor Tu

Probab=99.20  E-value=2.7e-11  Score=111.57  Aligned_cols=77  Identities=17%  Similarity=0.261  Sum_probs=64.4

Q ss_pred             CCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhh
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQ  194 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~  194 (207)
                      .+.++.++ +.|||.+|+     +||++|+.        |||.+|. ++||+||+.++..+|++++|||+||||+++.++
T Consensus        73 ~~~~~~~i-DtPGh~~~~-----~~~~~~~~~~D~~ilVvda~~g~-~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~  145 (409)
T CHL00071         73 ENRHYAHV-DCPGHADYV-----KNMITGAAQMDGAILVVSAADGP-MPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEE  145 (409)
T ss_pred             CCeEEEEE-ECCChHHHH-----HHHHHHHHhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHH
Confidence            45577777 999999999     99988865        8999996 999999999999999999999999999998554


Q ss_pred             H-HHHHHHHHhhh
Q psy13818        195 A-NEQHEQIVKFV  206 (207)
Q Consensus       195 ~-~~~~~eI~~~l  206 (207)
                      . +...++++++|
T Consensus       146 ~~~~~~~~l~~~l  158 (409)
T CHL00071        146 LLELVELEVRELL  158 (409)
T ss_pred             HHHHHHHHHHHHH
Confidence            3 33445777665

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.20  E-value=3.3e-11  Score=113.66  Aligned_cols=84  Identities=18%  Similarity=0.249  Sum_probs=66.2

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeE
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHI  180 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~i  180 (207)
                      |.++.++..+     +.++.|+ +.|||.+|+     +||++|+.        |||++|. ++||+||+.++..+|++++
T Consensus        96 d~~~~~~~~~-----~~~i~~i-DTPGh~~f~-----~~~~~~l~~aD~allVVDa~~G~-~~qt~~~~~l~~~lg~~~i  163 (474)
T PRK05124         96 DVAYRYFSTE-----KRKFIIA-DTPGHEQYT-----RNMATGASTCDLAILLIDARKGV-LDQTRRHSFIATLLGIKHL  163 (474)
T ss_pred             EeeEEEeccC-----CcEEEEE-ECCCcHHHH-----HHHHHHHhhCCEEEEEEECCCCc-cccchHHHHHHHHhCCCce
Confidence            4556666543     5577776 999999999     88888765        8999996 9999999999999999999


Q ss_pred             EEEEecCCCCChh--hHHHHHHHHHh
Q psy13818        181 IILQNKIDLVKEG--QANEQHEQIVK  204 (207)
Q Consensus       181 IV~vNK~DlV~~~--~~~~~~~eI~~  204 (207)
                      ||++||||+++++  ..++..+++++
T Consensus       164 IvvvNKiD~~~~~~~~~~~i~~~l~~  189 (474)
T PRK05124        164 VVAVNKMDLVDYSEEVFERIREDYLT  189 (474)
T ss_pred             EEEEEeeccccchhHHHHHHHHHHHH
Confidence            9999999999644  23333444444

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.16  E-value=4.3e-11  Score=97.46  Aligned_cols=74  Identities=34%  Similarity=0.486  Sum_probs=62.1

Q ss_pred             ccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818        121 TEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       121 ~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      .+.+.++.++ +.|||.+|+     ++|++|+.        |||++|. ++||+||+.+++.++++ +|||+||||++ +
T Consensus        66 ~~~~~~i~~i-DtPG~~~f~-----~~~~~~~~~~D~ailvVda~~g~-~~~~~~~l~~~~~~~~p-~ivvlNK~D~~-~  136 (188)
T PF00009_consen   66 NENNRKITLI-DTPGHEDFI-----KEMIRGLRQADIAILVVDANDGI-QPQTEEHLKILRELGIP-IIVVLNKMDLI-E  136 (188)
T ss_dssp             TESSEEEEEE-EESSSHHHH-----HHHHHHHTTSSEEEEEEETTTBS-THHHHHHHHHHHHTT-S-EEEEEETCTSS-H
T ss_pred             cccccceeec-cccccccee-----ecccceecccccceeeeeccccc-ccccccccccccccccc-eEEeeeeccch-h
Confidence            4467788888 999999999     77776654        9999996 99999999999999999 99999999999 4


Q ss_pred             hhHHHHHHHHH
Q psy13818        193 GQANEQHEQIV  203 (207)
Q Consensus       193 ~~~~~~~~eI~  203 (207)
                      .+.++..++++
T Consensus       137 ~~~~~~~~~~~  147 (188)
T PF00009_consen  137 KELEEIIEEIK  147 (188)
T ss_dssp             HHHHHHHHHHH
T ss_pred             hhHHHHHHHHH
Confidence            45566667766

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>PRK12735 elongation factor Tu; Reviewed

Probab=99.16  E-value=6.3e-11  Score=108.69  Aligned_cols=77  Identities=17%  Similarity=0.279  Sum_probs=63.0

Q ss_pred             CCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhh
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQ  194 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~  194 (207)
                      .+.++.++ +.|||.+|+     +||++|+.        |||.+|. ++||+||+.++..+|++++||++||||+++.++
T Consensus        73 ~~~~i~~i-DtPGh~~f~-----~~~~~~~~~aD~~llVvda~~g~-~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~  145 (396)
T PRK12735         73 ANRHYAHV-DCPGHADYV-----KNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQVGVPYIVVFLNKCDMVDDEE  145 (396)
T ss_pred             CCcEEEEE-ECCCHHHHH-----HHHHhhhccCCEEEEEEECCCCC-chhHHHHHHHHHHcCCCeEEEEEEecCCcchHH
Confidence            35567777 999999999     99998875        8899996 999999999999999999999999999996433


Q ss_pred             -HHHHHHHHHhhh
Q psy13818        195 -ANEQHEQIVKFV  206 (207)
Q Consensus       195 -~~~~~~eI~~~l  206 (207)
                       .+...+++++++
T Consensus       146 ~~~~~~~ei~~~l  158 (396)
T PRK12735        146 LLELVEMEVRELL  158 (396)
T ss_pred             HHHHHHHHHHHHH
Confidence             333344666654

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.14  E-value=6.3e-11  Score=99.36  Aligned_cols=77  Identities=19%  Similarity=0.293  Sum_probs=62.5

Q ss_pred             CCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhh
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQ  194 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~  194 (207)
                      .+.++.++ +.|||.+|+     ++|..++.        |||.+|. ++||+||+.++..+|++++|+|+||||+++.++
T Consensus        63 ~~~~i~~i-DtPG~~~~~-----~~~~~~~~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~  135 (195)
T cd01884          63 ANRHYAHV-DCPGHADYI-----KNMITGAAQMDGAILVVSATDGP-MPQTREHLLLARQVGVPYIVVFLNKADMVDDEE  135 (195)
T ss_pred             CCeEEEEE-ECcCHHHHH-----HHHHHHhhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHH
Confidence            46677777 999999999     66666544        8899996 999999999999999999999999999986443


Q ss_pred             -HHHHHHHHHhhh
Q psy13818        195 -ANEQHEQIVKFV  206 (207)
Q Consensus       195 -~~~~~~eI~~~l  206 (207)
                       .+...++++++|
T Consensus       136 ~~~~~~~~i~~~l  148 (195)
T cd01884         136 LLELVEMEVRELL  148 (195)
T ss_pred             HHHHHHHHHHHHH
Confidence             333556777765

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.11  E-value=1.2e-10  Score=112.74  Aligned_cols=85  Identities=18%  Similarity=0.252  Sum_probs=67.5

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeE
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHI  180 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~i  180 (207)
                      |.++.++..     .+.++.|+ +.|||.+|+     +||+.|+.        |||++|. ++||+||+.+++.+|++++
T Consensus        93 d~~~~~~~~-----~~~~~~li-DtPG~~~f~-----~~~~~~~~~aD~~llVvda~~g~-~~~t~e~~~~~~~~~~~~i  160 (632)
T PRK05506         93 DVAYRYFAT-----PKRKFIVA-DTPGHEQYT-----RNMVTGASTADLAIILVDARKGV-LTQTRRHSFIASLLGIRHV  160 (632)
T ss_pred             eeeeeEEcc-----CCceEEEE-ECCChHHHH-----HHHHHHHHhCCEEEEEEECCCCc-cccCHHHHHHHHHhCCCeE
Confidence            555555554     35677776 999999999     99998865        8999996 9999999999999999999


Q ss_pred             EEEEecCCCCChh--hHHHHHHHHHhh
Q psy13818        181 IILQNKIDLVKEG--QANEQHEQIVKF  205 (207)
Q Consensus       181 IV~vNK~DlV~~~--~~~~~~~eI~~~  205 (207)
                      ||++||||+++++  +.++..+++++|
T Consensus       161 ivvvNK~D~~~~~~~~~~~i~~~i~~~  187 (632)
T PRK05506        161 VLAVNKMDLVDYDQEVFDEIVADYRAF  187 (632)
T ss_pred             EEEEEecccccchhHHHHHHHHHHHHH
Confidence            9999999999643  334444555544

>KOG0459|consensus

Probab=99.10  E-value=1.6e-10  Score=109.25  Aligned_cols=85  Identities=21%  Similarity=0.280  Sum_probs=67.3

Q ss_pred             eEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecC----CCC--CCCchHHHHHHHHHc
Q psy13818        110 LAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGN----ESC--PQPQTSEHLAAIEIM  175 (207)
Q Consensus       110 la~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~----eg~--~~pQT~EHl~il~~l  175 (207)
                      .+++|+..+     -.+..|. +.|||-.|+     +|||.||+        ++|.    |+.  .-.|||||..+++.+
T Consensus       147 vGrA~FEte-----~~~ftiL-DApGHk~fv-----~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~  215 (501)
T KOG0459|consen  147 VGRAYFETE-----NKRFTIL-DAPGHKSFV-----PNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTA  215 (501)
T ss_pred             eeeEEEEec-----ceeEEee-ccCcccccc-----hhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhh
Confidence            445566554     3466666 889999999     99999998        4553    221  136999999999999


Q ss_pred             CCCeEEEEEecCCCCChhhHHHHHHHHHhh
Q psy13818        176 KLKHIIILQNKIDLVKEGQANEQHEQIVKF  205 (207)
Q Consensus       176 GI~~iIV~vNK~DlV~~~~~~~~~~eI~~~  205 (207)
                      |++|+||++||||-...+|..++|+|+++-
T Consensus       216 gv~~lVv~vNKMddPtvnWs~eRy~E~~~k  245 (501)
T KOG0459|consen  216 GVKHLIVLINKMDDPTVNWSNERYEECKEK  245 (501)
T ss_pred             ccceEEEEEEeccCCccCcchhhHHHHHHH
Confidence            999999999999987777778888887753

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.09  E-value=1.8e-10  Score=95.63  Aligned_cols=76  Identities=59%  Similarity=0.779  Sum_probs=63.6

Q ss_pred             cEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHH
Q psy13818        125 EKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQAN  196 (207)
Q Consensus       125 ~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~  196 (207)
                      .++.|. +.|||++|+     ++|+.++.        +|+.++.+++||.+|+..+...+++++||++||+|+++.++.+
T Consensus        83 ~~i~~i-DtPG~~~~~-----~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~~~~~  156 (203)
T cd01888          83 RHVSFV-DCPGHEILM-----ATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKEEQAL  156 (203)
T ss_pred             cEEEEE-ECCChHHHH-----HHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCHHHHH
Confidence            678887 999999999     77776653        8888865689999999999999999999999999999876666


Q ss_pred             HHHHHHHhhh
Q psy13818        197 EQHEQIVKFV  206 (207)
Q Consensus       197 ~~~~eI~~~l  206 (207)
                      +.++++++++
T Consensus       157 ~~~~~i~~~~  166 (203)
T cd01888         157 ENYEQIKKFV  166 (203)
T ss_pred             HHHHHHHHHH
Confidence            6667776654

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PRK00049 elongation factor Tu; Reviewed

Probab=99.08  E-value=2.7e-10  Score=104.73  Aligned_cols=77  Identities=16%  Similarity=0.258  Sum_probs=63.2

Q ss_pred             CCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhh
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQ  194 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~  194 (207)
                      .+.++.++ +.|||.+|+     +||.+|+.        |||.+|. ++||+||+.++..+|++++||++||||+++.++
T Consensus        73 ~~~~i~~i-DtPG~~~f~-----~~~~~~~~~aD~~llVVDa~~g~-~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~  145 (396)
T PRK00049         73 EKRHYAHV-DCPGHADYV-----KNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQVGVPYIVVFLNKCDMVDDEE  145 (396)
T ss_pred             CCeEEEEE-ECCCHHHHH-----HHHHhhhccCCEEEEEEECCCCC-chHHHHHHHHHHHcCCCEEEEEEeecCCcchHH
Confidence            45577777 999999999     88888766        8999996 999999999999999999999999999996433


Q ss_pred             -HHHHHHHHHhhh
Q psy13818        195 -ANEQHEQIVKFV  206 (207)
Q Consensus       195 -~~~~~~eI~~~l  206 (207)
                       .+...+++++++
T Consensus       146 ~~~~~~~~i~~~l  158 (396)
T PRK00049        146 LLELVEMEVRELL  158 (396)
T ss_pred             HHHHHHHHHHHHH
Confidence             333445676665

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.07  E-value=1.4e-10  Score=107.35  Aligned_cols=76  Identities=45%  Similarity=0.700  Sum_probs=65.7

Q ss_pred             cEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHH
Q psy13818        125 EKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQAN  196 (207)
Q Consensus       125 ~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~  196 (207)
                      .++.|. +.|||.+|+     +||+.|+.        +|+.++.+++||.+|+.+++.++++++|||+||+|++++++..
T Consensus        85 ~~i~li-DtPG~~~f~-----~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~~~~~  158 (411)
T PRK04000         85 RRVSFV-DAPGHETLM-----ATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKERAL  158 (411)
T ss_pred             cEEEEE-ECCCHHHHH-----HHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccchhHH
Confidence            467776 999999999     88888864        8999986689999999999999999999999999999877766


Q ss_pred             HHHHHHHhhh
Q psy13818        197 EQHEQIVKFV  206 (207)
Q Consensus       197 ~~~~eI~~~l  206 (207)
                      +.++++++++
T Consensus       159 ~~~~~i~~~l  168 (411)
T PRK04000        159 ENYEQIKEFV  168 (411)
T ss_pred             HHHHHHHHHh
Confidence            6777887765

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.06  E-value=2.9e-10  Score=97.37  Aligned_cols=82  Identities=16%  Similarity=0.282  Sum_probs=70.0

Q ss_pred             cccccCCcEEEEEEeecCcceeecccccccccccee----------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecC
Q psy13818        118 PVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK----------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKI  187 (207)
Q Consensus       118 Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~----------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~  187 (207)
                      .+|...+..+.++ +.|||++|+     ++|+.|+.          ||+++|. ++||++|+..+..+|++ +|||+||+
T Consensus        77 ~~~~~~~~~i~li-DtpG~~~~~-----~~~~~~~~~~~~D~~llVvda~~g~-~~~d~~~l~~l~~~~ip-~ivvvNK~  148 (224)
T cd04165          77 EICEKSSKLVTFI-DLAGHERYL-----KTTLFGLTGYAPDYAMLVVAANAGI-IGMTKEHLGLALALNIP-VFVVVTKI  148 (224)
T ss_pred             eeeeeCCcEEEEE-ECCCcHHHH-----HHHHHhhcccCCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCC-EEEEEECc
Confidence            5566677788887 999999999     77777642          8899996 99999999999999998 78999999


Q ss_pred             CCCChhhHHHHHHHHHhhhC
Q psy13818        188 DLVKEGQANEQHEQIVKFVQ  207 (207)
Q Consensus       188 DlV~~~~~~~~~~eI~~~l~  207 (207)
                      |+++.++..+..++++++++
T Consensus       149 D~~~~~~~~~~~~~l~~~L~  168 (224)
T cd04165         149 DLAPANILQETLKDLKRILK  168 (224)
T ss_pred             cccCHHHHHHHHHHHHHHhc
Confidence            99988878888888887763

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=98.98  E-value=1.8e-09  Score=99.34  Aligned_cols=86  Identities=20%  Similarity=0.350  Sum_probs=66.9

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCC--CCCCCchHHHHHHHHHcCCC
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNE--SCPQPQTSEHLAAIEIMKLK  178 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~e--g~~~pQT~EHl~il~~lGI~  178 (207)
                      |..+.++..     .+.++.+. +.|||.+|.     +||++++.        ||+++  +. ++||+||+.+++.+|++
T Consensus        73 d~~~~~~~~-----~~~~i~li-DtpG~~~~~-----~~~~~~~~~aD~~ilVvDa~~~~~~-~~~~~~~~~~~~~~~~~  140 (425)
T PRK12317         73 DLAHKKFET-----DKYYFTIV-DCPGHRDFV-----KNMITGASQADAAVLVVAADDAGGV-MPQTREHVFLARTLGIN  140 (425)
T ss_pred             eeeeEEEec-----CCeEEEEE-ECCCcccch-----hhHhhchhcCCEEEEEEEcccCCCC-CcchHHHHHHHHHcCCC
Confidence            555555544     35678887 999999999     88887754        88988  85 99999999999999999


Q ss_pred             eEEEEEecCCCCChh--hHHHHHHHHHhhh
Q psy13818        179 HIIILQNKIDLVKEG--QANEQHEQIVKFV  206 (207)
Q Consensus       179 ~iIV~vNK~DlV~~~--~~~~~~~eI~~~l  206 (207)
                      ++||++||+|+++++  ..++..+++++++
T Consensus       141 ~iivviNK~Dl~~~~~~~~~~~~~~i~~~l  170 (425)
T PRK12317        141 QLIVAINKMDAVNYDEKRYEEVKEEVSKLL  170 (425)
T ss_pred             eEEEEEEccccccccHHHHHHHHHHHHHHH
Confidence            999999999998743  2334445665553

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=98.97  E-value=1.5e-09  Score=100.06  Aligned_cols=76  Identities=17%  Similarity=0.322  Sum_probs=61.1

Q ss_pred             CcEEEEEEeecCcceeecccccccccccee--------eecCCC---CCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818        124 NEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNES---CPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg---~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      +.++.|. +.+||.+|+     +||+.|+.        ||++++   . ++||+||+.+++.++++++||++||+|++++
T Consensus        84 ~~~i~ii-DtpGh~~f~-----~~~~~~~~~aD~~ilVvDa~~~~~~~-~~~t~~~~~~~~~~~~~~iIVviNK~Dl~~~  156 (426)
T TIGR00483        84 KYEVTIV-DCPGHRDFI-----KNMITGASQADAAVLVVAVGDGEFEV-QPQTREHAFLARTLGINQLIVAINKMDSVNY  156 (426)
T ss_pred             CeEEEEE-ECCCHHHHH-----HHHHhhhhhCCEEEEEEECCCCCccc-CCchHHHHHHHHHcCCCeEEEEEEChhccCc
Confidence            4567776 999999999     88887644        889888   5 8999999999999999999999999999863


Q ss_pred             --hhHHHHHHHHHhhh
Q psy13818        193 --GQANEQHEQIVKFV  206 (207)
Q Consensus       193 --~~~~~~~~eI~~~l  206 (207)
                        ++.++..+++++++
T Consensus       157 ~~~~~~~~~~ei~~~~  172 (426)
T TIGR00483       157 DEEEFEAIKKEVSNLI  172 (426)
T ss_pred             cHHHHHHHHHHHHHHH
Confidence              33444455666554

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=98.78  E-value=1.5e-08  Score=85.21  Aligned_cols=63  Identities=17%  Similarity=0.254  Sum_probs=52.3

Q ss_pred             CCcEEEEEEeecCcceeecccccccccccee--------eecCCC------CCCCchHHHHHHHHHcCCCeEEEEEecCC
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNES------CPQPQTSEHLAAIEIMKLKHIIILQNKID  188 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg------~~~pQT~EHl~il~~lGI~~iIV~vNK~D  188 (207)
                      .+.++.+. +.+||.+|+     ++++.++.        ||+.++      ..++||.+|+.++..++++++|||+||||
T Consensus        75 ~~~~i~li-DtpG~~~~~-----~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~D  148 (219)
T cd01883          75 EKYRFTIL-DAPGHRDFV-----PNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMD  148 (219)
T ss_pred             CCeEEEEE-ECCChHHHH-----HHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEccc
Confidence            46688887 999999998     66655532        888873      23899999999999999999999999999


Q ss_pred             CCC
Q psy13818        189 LVK  191 (207)
Q Consensus       189 lV~  191 (207)
                      ++.
T Consensus       149 l~~  151 (219)
T cd01883         149 DVT  151 (219)
T ss_pred             ccc
Confidence            983

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>cd04094 selB_III This family represents the domain of elongation factor SelB, homologous to domain III of EF-Tu

Probab=98.58  E-value=2.6e-07  Score=69.49  Aligned_cols=86  Identities=21%  Similarity=0.322  Sum_probs=70.3

Q ss_pred             eeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceEEEEeec
Q psy13818         17 GQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGS   96 (207)
Q Consensus        17 G~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lmlniGs   96 (207)
                      |+|++.||++++ +..++.+++++.                                  + .  ..+|+.++.+.+.+||
T Consensus         1 G~vl~~~~~~~~-~~~~~~~i~~l~----------------------------------~-~--~~~l~~~~~v~~~~Gt   42 (97)
T cd04094           1 GDVLADPGSLLP-TRRLDVRLTVLL----------------------------------S-A--PRPLKHRQRVHLHHGT   42 (97)
T ss_pred             CCEEecCCCcCC-ceEEEEEEEEEC----------------------------------C-C--CccCCCCCeEEEEecc
Confidence            789999999999 589998886441                                  1 1  2789999999999999


Q ss_pred             cccceEEEEEe--------cceEEEEeeCcccccCCcEEEEEEeecCcceeecc
Q psy13818         97 LSTGGRVLATK--------ADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEG  142 (207)
Q Consensus        97 ~~t~g~V~~~~--------~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg  142 (207)
                      +.+.|+|.=..        ...+.+.|..|+++..|+|..|  |..+.|+.|||
T Consensus        43 ~~v~~ri~ll~~~~~~pg~~~~a~l~l~~pl~~~~gdrfil--R~~~~~~tigg   94 (97)
T cd04094          43 SEVLARVVLLDRDELAPGEEALAQLRLEEPLVALRGDRFIL--RSYSPLRTLGG   94 (97)
T ss_pred             ceEEEEEEeCCccccCCCCEEEEEEEECCcEeecCCCeEEE--eeCCCCeEEEe
Confidence            99999998543        2357777789999999999988  56677999983

SelB may function by replacing EF-Tu. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation.

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=98.58  E-value=8.3e-08  Score=93.46  Aligned_cols=81  Identities=20%  Similarity=0.136  Sum_probs=62.9

Q ss_pred             cCCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHH
Q psy13818        122 EVNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQ  198 (207)
Q Consensus       122 ~~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~  198 (207)
                      +.+.++.|. +.|||.+|.+ ..-.-++.+|+.  |||.+|. +|||++|+..+..+|++ .|||+||||+.+.+ ..+.
T Consensus        61 ~~~~kinlI-DTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~-~~qT~~~l~~a~~~~ip-~IVviNKiD~~~a~-~~~v  136 (594)
T TIGR01394        61 YNGTKINIV-DTPGHADFGGEVERVLGMVDGVLLLVDASEGP-MPQTRFVLKKALELGLK-PIVVINKIDRPSAR-PDEV  136 (594)
T ss_pred             ECCEEEEEE-ECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCC-cHHHHHHHHHHHHCCCC-EEEEEECCCCCCcC-HHHH
Confidence            356788887 9999999986 322256777877  9999995 99999999999999998 57899999997643 2344


Q ss_pred             HHHHHhhh
Q psy13818        199 HEQIVKFV  206 (207)
Q Consensus       199 ~~eI~~~l  206 (207)
                      .+++.+++
T Consensus       137 ~~ei~~l~  144 (594)
T TIGR01394       137 VDEVFDLF  144 (594)
T ss_pred             HHHHHHHH
Confidence            56665554

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=98.56  E-value=1.1e-07  Score=79.25  Aligned_cols=63  Identities=17%  Similarity=0.305  Sum_probs=53.0

Q ss_pred             CCcEEEEEEeecCcceeeccccccccccce------e--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTR------K--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa------~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      .+.++.|. +.|||.+|.     ++|+.++      .  +|+.++. ++|+++|..+++.++++++|+|+||+|+++.
T Consensus        75 ~~~~~~li-DTpG~~~~~-----~~~~~~~~~ad~~llVvD~~~~~-~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~  145 (208)
T cd04166          75 PKRKFIIA-DTPGHEQYT-----RNMVTGASTADLAILLVDARKGV-LEQTRRHSYILSLLGIRHVVVAVNKMDLVDY  145 (208)
T ss_pred             CCceEEEE-ECCcHHHHH-----HHHHHhhhhCCEEEEEEECCCCc-cHhHHHHHHHHHHcCCCcEEEEEEchhcccC
Confidence            46678876 999999998     5555432      2  8999996 9999999999999999999999999999864

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=98.53  E-value=2e-07  Score=88.50  Aligned_cols=77  Identities=19%  Similarity=0.274  Sum_probs=67.9

Q ss_pred             CcEEEEEEeecCcceeecccccccccccee----------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        124 NEKIALSRRVEKHWSLIEGTVTTKVLSTRK----------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg~~~~nMiaGa~----------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      -+|+.-..+..||+++.     ++-+-|..          |+|++|. +-.|+||+-|+-.|+++ +||++||+|+++++
T Consensus       199 aDklVsfVDtvGHEpwL-----rTtirGL~gqk~dYglLvVaAddG~-~~~tkEHLgi~~a~~lP-viVvvTK~D~~~dd  271 (527)
T COG5258         199 ADKLVSFVDTVGHEPWL-----RTTIRGLLGQKVDYGLLVVAADDGV-TKMTKEHLGIALAMELP-VIVVVTKIDMVPDD  271 (527)
T ss_pred             cccEEEEEecCCccHHH-----HHHHHHHhccccceEEEEEEccCCc-chhhhHhhhhhhhhcCC-EEEEEEecccCcHH
Confidence            34555556888999999     99888876          8999995 99999999999999998 77889999999999


Q ss_pred             hHHHHHHHHHhhhC
Q psy13818        194 QANEQHEQIVKFVQ  207 (207)
Q Consensus       194 ~~~~~~~eI~~~l~  207 (207)
                      ..+...++|.+.|+
T Consensus       272 r~~~v~~ei~~~Lk  285 (527)
T COG5258         272 RFQGVVEEISALLK  285 (527)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999998874

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=98.49  E-value=2.8e-07  Score=79.36  Aligned_cols=79  Identities=18%  Similarity=0.142  Sum_probs=58.5

Q ss_pred             CCcEEEEEEeecCcceeeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCC------Chh
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLV------KEG  193 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV------~~~  193 (207)
                      .+.++.|. +.|||.+|.+-... -...+|+.  ||+.+|. ++||++|+..+...+++ +|+|+||||+.      +++
T Consensus        71 ~~~~i~ii-DTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~-~~~t~~~l~~~~~~~~p-~ilviNKiD~~~~e~~~~~~  147 (222)
T cd01885          71 NEYLINLI-DSPGHVDFSSEVTAALRLCDGALVVVDAVEGV-CVQTETVLRQALKERVK-PVLVINKIDRLILELKLSPE  147 (222)
T ss_pred             CceEEEEE-CCCCccccHHHHHHHHHhcCeeEEEEECCCCC-CHHHHHHHHHHHHcCCC-EEEEEECCCcchhhhcCCHH
Confidence            34567776 99999999942222 23334544  9999996 99999999999999985 99999999986      556


Q ss_pred             hHHHHHHHHHh
Q psy13818        194 QANEQHEQIVK  204 (207)
Q Consensus       194 ~~~~~~~eI~~  204 (207)
                      ++..++.+|.+
T Consensus       148 ~~~~~~~~ii~  158 (222)
T cd01885         148 EAYQRLARIIE  158 (222)
T ss_pred             HHHHHHHHHHH
Confidence            66666655544

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>cd04171 SelB SelB subfamily

Probab=98.43  E-value=5.1e-07  Score=69.17  Aligned_cols=75  Identities=27%  Similarity=0.400  Sum_probs=55.7

Q ss_pred             CcEEEEEEeecCcceeecccccccccc------cee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhH
Q psy13818        124 NEKIALSRRVEKHWSLIEGTVTTKVLS------TRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQA  195 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg~~~~nMia------Ga~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~  195 (207)
                      +.++.+. +.+|+.+|.     .++..      ++.  +|++++. .+|+.+++.+++..+.+++|+++||+|+.+.+..
T Consensus        50 ~~~~~~~-DtpG~~~~~-----~~~~~~~~~ad~ii~V~d~~~~~-~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~  122 (164)
T cd04171          50 GKRLGFI-DVPGHEKFI-----KNMLAGAGGIDLVLLVVAADEGI-MPQTREHLEILELLGIKRGLVVLTKADLVDEDWL  122 (164)
T ss_pred             CcEEEEE-ECCChHHHH-----HHHHhhhhcCCEEEEEEECCCCc-cHhHHHHHHHHHHhCCCcEEEEEECccccCHHHH
Confidence            4577776 999999887     44333      222  8888885 8999999999999998889999999999876533


Q ss_pred             HHHHHHHHhh
Q psy13818        196 NEQHEQIVKF  205 (207)
Q Consensus       196 ~~~~~eI~~~  205 (207)
                      ....+++.++
T Consensus       123 ~~~~~~~~~~  132 (164)
T cd04171         123 ELVEEEIREL  132 (164)
T ss_pred             HHHHHHHHHH
Confidence            3334444443

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=98.39  E-value=8.7e-07  Score=85.72  Aligned_cols=69  Identities=25%  Similarity=0.261  Sum_probs=58.7

Q ss_pred             ccCCcEEEEEEeecCcceeeccccc--ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        121 TEVNEKIALSRRVEKHWSLIEGTVT--TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       121 ~~~G~kiaIsR~V~gh~rligg~~~--~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      -|.|.||-|. +-|||.+| ||.+-  -.|++|+.  |||.|| ||||||=-+.=+=-+|++ -|||+||+|..+..
T Consensus        64 ~~~~~~INIv-DTPGHADF-GGEVERvl~MVDgvlLlVDA~EG-pMPQTrFVlkKAl~~gL~-PIVVvNKiDrp~Ar  136 (603)
T COG1217          64 NYNGTRINIV-DTPGHADF-GGEVERVLSMVDGVLLLVDASEG-PMPQTRFVLKKALALGLK-PIVVINKIDRPDAR  136 (603)
T ss_pred             ecCCeEEEEe-cCCCcCCc-cchhhhhhhhcceEEEEEEcccC-CCCchhhhHHHHHHcCCC-cEEEEeCCCCCCCC
Confidence            4578899998 99999998 46666  59999988  999999 599999888888888987 56789999998743

>KOG0461|consensus

Probab=98.35  E-value=4.6e-07  Score=85.46  Aligned_cols=79  Identities=28%  Similarity=0.320  Sum_probs=62.2

Q ss_pred             ceEEEEeeCccccc--CCc--EEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcC
Q psy13818        109 DLAKISLTNPVCTE--VNE--KIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMK  176 (207)
Q Consensus       109 Dla~i~L~~Pvc~~--~G~--kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lG  176 (207)
                      |+++--++.|.-+.  .|+  ..+++ +-|||-.||     |++|.||.        ||+..|. ||||.|||.|.+++.
T Consensus        50 DLGFS~~~v~~parLpq~e~lq~tlv-DCPGHasLI-----RtiiggaqiiDlm~lviDv~kG~-QtQtAEcLiig~~~c  122 (522)
T KOG0461|consen   50 DLGFSTMTVLSPARLPQGEQLQFTLV-DCPGHASLI-----RTIIGGAQIIDLMILVIDVQKGK-QTQTAECLIIGELLC  122 (522)
T ss_pred             eecceeeecccccccCccccceeEEE-eCCCcHHHH-----HHHHhhhheeeeeeEEEehhccc-ccccchhhhhhhhhc
Confidence            78887776652111  333  33776 999999999     99999977        8899997 999999999999886


Q ss_pred             CCeEEEEEecCCCCChhhH
Q psy13818        177 LKHIIILQNKIDLVKEGQA  195 (207)
Q Consensus       177 I~~iIV~vNK~DlV~~~~~  195 (207)
                       ++.||++||+|...+++.
T Consensus       123 -~klvvvinkid~lpE~qr  140 (522)
T KOG0461|consen  123 -KKLVVVINKIDVLPENQR  140 (522)
T ss_pred             -cceEEEEeccccccchhh
Confidence             568888999998777543

>KOG0052|consensus

Probab=98.34  E-value=3.7e-07  Score=85.68  Aligned_cols=68  Identities=21%  Similarity=0.243  Sum_probs=57.8

Q ss_pred             eecCcceeecccccccccccee--------eecCCCC------CCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHH
Q psy13818        132 RVEKHWSLIEGTVTTKVLSTRK--------RTGNESC------PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANE  197 (207)
Q Consensus       132 ~V~gh~rligg~~~~nMiaGa~--------V~A~eg~------~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~  197 (207)
                      +.+||-.|+     +||+.|.+        |+|.-|.      .-+||+||++++..||++++|+.+||||-..+...+.
T Consensus        88 d~pgh~d~~-----k~mitg~sqaD~avliva~~~gefEagiskngqt~ehalla~tlgv~qliv~v~k~D~~~~~~s~~  162 (391)
T KOG0052|consen   88 DAPGHRDFI-----KNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSTEPPYSEA  162 (391)
T ss_pred             cCCCCCcee-----eeEEeeEeeeceeEEEEeeeccceeeeccccchhhhhhhhhccccceeeeEEeecccccCCCcccc
Confidence            788999999     99999977        5552211      3699999999999999999999999999999877788


Q ss_pred             HHHHHHh
Q psy13818        198 QHEQIVK  204 (207)
Q Consensus       198 ~~~eI~~  204 (207)
                      ++.+|.+
T Consensus       163 r~~ei~k  169 (391)
T KOG0052|consen  163 RYEEIKK  169 (391)
T ss_pred             chhhhhe
Confidence            8888754

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=98.30  E-value=9.9e-07  Score=88.82  Aligned_cols=62  Identities=21%  Similarity=0.215  Sum_probs=52.5

Q ss_pred             CCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      .|.++.|. +.|||.+|.     ..+..|+.        ||+++|+ +|||+||+..++..+++ +|||+||||+.+.
T Consensus       335 ~~~~Itfi-DTPGhe~F~-----~m~~rga~~aDiaILVVdAddGv-~~qT~e~i~~a~~~~vP-iIVviNKiDl~~a  404 (787)
T PRK05306        335 NGGKITFL-DTPGHEAFT-----AMRARGAQVTDIVVLVVAADDGV-MPQTIEAINHAKAAGVP-IIVAINKIDKPGA  404 (787)
T ss_pred             CCEEEEEE-ECCCCccch-----hHHHhhhhhCCEEEEEEECCCCC-CHhHHHHHHHHHhcCCc-EEEEEECcccccc
Confidence            46788887 999999998     44444432        8899997 99999999999999998 9999999999764

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=98.28  E-value=1.9e-06  Score=84.03  Aligned_cols=65  Identities=22%  Similarity=0.248  Sum_probs=49.8

Q ss_pred             CcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK  191 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~  191 (207)
                      +.++.|. +.|||.+|.. +.-..+..+++.  +|+++|. +|||.||+..++..+++ +||++||+|+.+
T Consensus       134 ~~~i~~i-DTPGhe~F~~~r~rga~~aDiaILVVda~dgv-~~qT~e~i~~~~~~~vP-iIVviNKiDl~~  201 (587)
T TIGR00487       134 GKMITFL-DTPGHEAFTSMRARGAKVTDIVVLVVAADDGV-MPQTIEAISHAKAANVP-IIVAINKIDKPE  201 (587)
T ss_pred             CcEEEEE-ECCCCcchhhHHHhhhccCCEEEEEEECCCCC-CHhHHHHHHHHHHcCCC-EEEEEECccccc
Confidence            3378887 9999999982 111112222333  8899996 99999999999999998 999999999965

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>cd01889 SelB_euk SelB subfamily

Probab=98.23  E-value=2.1e-06  Score=69.89  Aligned_cols=73  Identities=32%  Similarity=0.389  Sum_probs=55.9

Q ss_pred             CcEEEEEEeecCcceeeccccccccccce------e--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhH
Q psy13818        124 NEKIALSRRVEKHWSLIEGTVTTKVLSTR------K--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQA  195 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg~~~~nMiaGa------~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~  195 (207)
                      +.++.+. +.|||-+|+     ++++.++      .  +|+.++. .+|+.+++.++..+++ .+++++||+|+++.++.
T Consensus        67 ~~~~~i~-DtpG~~~~~-----~~~~~~~~~~d~vi~VvD~~~~~-~~~~~~~~~~~~~~~~-~~iiv~NK~Dl~~~~~~  138 (192)
T cd01889          67 NLQITLV-DCPGHASLI-----RTIIGGAQIIDLMLLVVDATKGI-QTQTAECLVIGEILCK-KLIVVLNKIDLIPEEER  138 (192)
T ss_pred             CceEEEE-ECCCcHHHH-----HHHHHHHhhCCEEEEEEECCCCc-cHHHHHHHHHHHHcCC-CEEEEEECcccCCHHHH
Confidence            5577776 999998887     5555443      3  8888885 8999999999988887 78899999999976655


Q ss_pred             HHHHHHHHh
Q psy13818        196 NEQHEQIVK  204 (207)
Q Consensus       196 ~~~~~eI~~  204 (207)
                      +...+++++
T Consensus       139 ~~~~~~~~~  147 (192)
T cd01889         139 ERKIEKMKK  147 (192)
T ss_pred             HHHHHHHHH
Confidence            555555544

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=98.22  E-value=2.1e-06  Score=75.79  Aligned_cols=81  Identities=17%  Similarity=0.123  Sum_probs=59.1

Q ss_pred             cCCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHH
Q psy13818        122 EVNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQ  198 (207)
Q Consensus       122 ~~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~  198 (207)
                      +.+.++.++ +.|||-+|.+ +.-.-..++++.  |||.+|. ++||.+++..+...|++. |+++||+|+.+.+ .++.
T Consensus        61 ~~~~~i~li-DTPG~~df~~~~~~~l~~aD~ailVVDa~~g~-~~~t~~~~~~~~~~~~p~-ivviNK~D~~~a~-~~~~  136 (270)
T cd01886          61 WKDHRINII-DTPGHVDFTIEVERSLRVLDGAVAVFDAVAGV-EPQTETVWRQADRYNVPR-IAFVNKMDRTGAD-FFRV  136 (270)
T ss_pred             ECCEEEEEE-ECCCcHHHHHHHHHHHHHcCEEEEEEECCCCC-CHHHHHHHHHHHHcCCCE-EEEEECCCCCCCC-HHHH
Confidence            346688877 9999999985 222222334444  8999997 999999999999999987 5789999998643 2345


Q ss_pred             HHHHHhhh
Q psy13818        199 HEQIVKFV  206 (207)
Q Consensus       199 ~~eI~~~l  206 (207)
                      .+++++.+
T Consensus       137 ~~~l~~~l  144 (270)
T cd01886         137 VEQIREKL  144 (270)
T ss_pred             HHHHHHHh
Confidence            56666654

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PRK00007 elongation factor G; Reviewed

Probab=98.21  E-value=1.9e-06  Score=84.83  Aligned_cols=80  Identities=18%  Similarity=0.156  Sum_probs=60.7

Q ss_pred             CCcEEEEEEeecCcceeeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHH
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQH  199 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~  199 (207)
                      .+.++.++ +.|||-+|.+-... -..++++.  |||.+|+ ++||++|+..+..+|++. ||++||||+++.+ ..+..
T Consensus        73 ~~~~~~li-DTPG~~~f~~ev~~al~~~D~~vlVvda~~g~-~~qt~~~~~~~~~~~~p~-iv~vNK~D~~~~~-~~~~~  148 (693)
T PRK00007         73 KDHRINII-DTPGHVDFTIEVERSLRVLDGAVAVFDAVGGV-EPQSETVWRQADKYKVPR-IAFVNKMDRTGAD-FYRVV  148 (693)
T ss_pred             CCeEEEEE-eCCCcHHHHHHHHHHHHHcCEEEEEEECCCCc-chhhHHHHHHHHHcCCCE-EEEEECCCCCCCC-HHHHH
Confidence            47788887 99999999841111 22334444  9999996 999999999999999986 5899999999765 44566


Q ss_pred             HHHHhhh
Q psy13818        200 EQIVKFV  206 (207)
Q Consensus       200 ~eI~~~l  206 (207)
                      ++|++.+
T Consensus       149 ~~i~~~l  155 (693)
T PRK00007        149 EQIKDRL  155 (693)
T ss_pred             HHHHHHh
Confidence            7776654

>PRK10218 GTP-binding protein; Provisional

Probab=98.21  E-value=3.6e-06  Score=82.52  Aligned_cols=81  Identities=15%  Similarity=0.061  Sum_probs=61.7

Q ss_pred             cCCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHH
Q psy13818        122 EVNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQ  198 (207)
Q Consensus       122 ~~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~  198 (207)
                      +.+.++.+. +.|||.+|.+ +.-.-.+.+|+.  ||+.+|. ++||++|+..+..+|++. ||++||||+.+.+ ..+.
T Consensus        65 ~~~~~inli-DTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~-~~qt~~~l~~a~~~gip~-IVviNKiD~~~a~-~~~v  140 (607)
T PRK10218         65 WNDYRINIV-DTPGHADFGGEVERVMSMVDSVLLVVDAFDGP-MPQTRFVTKKAFAYGLKP-IVVINKVDRPGAR-PDWV  140 (607)
T ss_pred             cCCEEEEEE-ECCCcchhHHHHHHHHHhCCEEEEEEecccCc-cHHHHHHHHHHHHcCCCE-EEEEECcCCCCCc-hhHH
Confidence            356678887 9999999997 433345567766  8999996 999999999999999986 6789999997533 2344


Q ss_pred             HHHHHhhh
Q psy13818        199 HEQIVKFV  206 (207)
Q Consensus       199 ~~eI~~~l  206 (207)
                      .+++.+++
T Consensus       141 l~ei~~l~  148 (607)
T PRK10218        141 VDQVFDLF  148 (607)
T ss_pred             HHHHHHHH
Confidence            55666554

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.10  E-value=4.7e-06  Score=80.59  Aligned_cols=61  Identities=18%  Similarity=0.223  Sum_probs=52.6

Q ss_pred             CcEEEEEEeecCcceeeccccccccccc-ee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        124 NEKIALSRRVEKHWSLIEGTVTTKVLST-RK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg~~~~nMiaG-a~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      ...+.++ +-|||+-|.      ||=+. +.        ||+++|+ ||||.|-+..++..|++ +||++||||..+.+
T Consensus        54 ~~~itFi-DTPGHeAFt------~mRaRGa~vtDIaILVVa~dDGv-~pQTiEAI~hak~a~vP-~iVAiNKiDk~~~n  123 (509)
T COG0532          54 IPGITFI-DTPGHEAFT------AMRARGASVTDIAILVVAADDGV-MPQTIEAINHAKAAGVP-IVVAINKIDKPEAN  123 (509)
T ss_pred             CceEEEE-cCCcHHHHH------HHHhcCCccccEEEEEEEccCCc-chhHHHHHHHHHHCCCC-EEEEEecccCCCCC
Confidence            3478888 999999997      66553 33        9999998 99999999999999998 99999999998755

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=98.07  E-value=5.1e-06  Score=83.71  Aligned_cols=60  Identities=18%  Similarity=0.111  Sum_probs=51.1

Q ss_pred             CCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCC
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLV  190 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV  190 (207)
                      .+.++-++ +.|||-+|+     .+|.+|+.        |||.+|+ ++||++|+..+...+++. |+++||||+.
T Consensus        96 ~~~~inli-DtPGh~dF~-----~e~~~al~~~D~ailVvda~~Gv-~~~t~~~~~~~~~~~~p~-i~~iNK~D~~  163 (843)
T PLN00116         96 NEYLINLI-DSPGHVDFS-----SEVTAALRITDGALVVVDCIEGV-CVQTETVLRQALGERIRP-VLTVNKMDRC  163 (843)
T ss_pred             CceEEEEE-CCCCHHHHH-----HHHHHHHhhcCEEEEEEECCCCC-cccHHHHHHHHHHCCCCE-EEEEECCccc
Confidence            35578887 999999999     66655543        9999998 999999999999999875 7889999998

>cd04168 TetM_like Tet(M)-like subfamily

Probab=98.06  E-value=7.9e-06  Score=70.56  Aligned_cols=81  Identities=21%  Similarity=0.187  Sum_probs=61.3

Q ss_pred             cCCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHH
Q psy13818        122 EVNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQ  198 (207)
Q Consensus       122 ~~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~  198 (207)
                      +.+.++.+. +.|||.+|.+ +.-.-...+++.  +|+.+|. ++||.++...++..+++. ++++||+|+...+. .+.
T Consensus        61 ~~~~~i~li-DTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~-~~~~~~~~~~~~~~~~P~-iivvNK~D~~~a~~-~~~  136 (237)
T cd04168          61 WEDTKVNLI-DTPGHMDFIAEVERSLSVLDGAILVISAVEGV-QAQTRILWRLLRKLNIPT-IIFVNKIDRAGADL-EKV  136 (237)
T ss_pred             ECCEEEEEE-eCCCccchHHHHHHHHHHhCeEEEEEeCCCCC-CHHHHHHHHHHHHcCCCE-EEEEECccccCCCH-HHH
Confidence            346688887 9999999985 211112224444  8899997 899999999999999985 67999999986543 678


Q ss_pred             HHHHHhhh
Q psy13818        199 HEQIVKFV  206 (207)
Q Consensus       199 ~~eI~~~l  206 (207)
                      +++|++.+
T Consensus       137 ~~~i~~~~  144 (237)
T cd04168         137 YQEIKEKL  144 (237)
T ss_pred             HHHHHHHH
Confidence            88888765

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>CHL00189 infB translation initiation factor 2; Provisional

Probab=98.03  E-value=4.4e-06  Score=83.83  Aligned_cols=61  Identities=25%  Similarity=0.313  Sum_probs=50.7

Q ss_pred             CcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818        124 NEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      +.++.|. +.|||.+|.     +.+..|+.        |||++|. +|||.||+..+...+++ +|||+||+|+.+.
T Consensus       294 ~~kItfi-DTPGhe~F~-----~mr~rg~~~aDiaILVVDA~dGv-~~QT~E~I~~~k~~~iP-iIVViNKiDl~~~  362 (742)
T CHL00189        294 NQKIVFL-DTPGHEAFS-----SMRSRGANVTDIAILIIAADDGV-KPQTIEAINYIQAANVP-IIVAINKIDKANA  362 (742)
T ss_pred             ceEEEEE-ECCcHHHHH-----HHHHHHHHHCCEEEEEEECcCCC-ChhhHHHHHHHHhcCce-EEEEEECCCcccc
Confidence            4678887 999999998     44433332        8899996 99999999999999997 8999999999764

>PRK12739 elongation factor G; Reviewed

Probab=98.01  E-value=9e-06  Score=80.02  Aligned_cols=80  Identities=16%  Similarity=0.160  Sum_probs=61.0

Q ss_pred             CCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHH
Q psy13818        123 VNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQH  199 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~  199 (207)
                      .+.++.++ +.|||-+|.+ +.-.-..++++.  |||.+|. ++||++++..+...|++. ||++||||+...+ ..+..
T Consensus        71 ~~~~i~li-DTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~-~~qt~~i~~~~~~~~~p~-iv~iNK~D~~~~~-~~~~~  146 (691)
T PRK12739         71 KGHRINII-DTPGHVDFTIEVERSLRVLDGAVAVFDAVSGV-EPQSETVWRQADKYGVPR-IVFVNKMDRIGAD-FFRSV  146 (691)
T ss_pred             CCEEEEEE-cCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCC-CHHHHHHHHHHHHcCCCE-EEEEECCCCCCCC-HHHHH
Confidence            46678876 9999999985 222233445555  9999997 999999999999999987 5899999999755 34566


Q ss_pred             HHHHhhh
Q psy13818        200 EQIVKFV  206 (207)
Q Consensus       200 ~eI~~~l  206 (207)
                      ++|++.+
T Consensus       147 ~~i~~~l  153 (691)
T PRK12739        147 EQIKDRL  153 (691)
T ss_pred             HHHHHHh
Confidence            6776654

>KOG0462|consensus

Probab=97.95  E-value=3.8e-05  Score=75.52  Aligned_cols=89  Identities=20%  Similarity=0.182  Sum_probs=69.0

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeeccccc--ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEE
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVT--TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQ  184 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~--~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~v  184 (207)
                      -.+.+..+.    ..+-.+-++ +-|||-+|- |.+-  =+|..||.  |||++|+ |+||.--+.++--.|+. +|.|+
T Consensus       113 Qtasify~~----~~~ylLNLI-DTPGHvDFs-~EVsRslaac~G~lLvVDA~qGv-qAQT~anf~lAfe~~L~-iIpVl  184 (650)
T KOG0462|consen  113 QTASIFYKD----GQSYLLNLI-DTPGHVDFS-GEVSRSLAACDGALLVVDASQGV-QAQTVANFYLAFEAGLA-IIPVL  184 (650)
T ss_pred             eeeEEEEEc----CCceEEEee-cCCCccccc-ceehehhhhcCceEEEEEcCcCc-hHHHHHHHHHHHHcCCe-EEEee
Confidence            344444444    244567776 999999997 5555  48999988  9999997 99999999999999995 89999


Q ss_pred             ecCCCCChhhHHHHHHHHHhhh
Q psy13818        185 NKIDLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       185 NK~DlV~~~~~~~~~~eI~~~l  206 (207)
                      ||+|+...+ .+++..++.+++
T Consensus       185 NKIDlp~ad-pe~V~~q~~~lF  205 (650)
T KOG0462|consen  185 NKIDLPSAD-PERVENQLFELF  205 (650)
T ss_pred             eccCCCCCC-HHHHHHHHHHHh
Confidence            999998755 245666676654

>KOG1143|consensus

Probab=97.88  E-value=3.2e-05  Score=73.88  Aligned_cols=81  Identities=14%  Similarity=0.246  Sum_probs=65.0

Q ss_pred             cccccCCcEEEEEEeecCcceeecccccccccccee----------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecC
Q psy13818        118 PVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK----------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKI  187 (207)
Q Consensus       118 Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~----------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~  187 (207)
                      .+|..+..-+.++ +..||.+|.     ++-+-|..          |+|+-|+ ---|+||+.|+..|.++-+ |+++||
T Consensus       242 Ei~e~SSKlvTfi-DLAGh~kY~-----~TTi~gLtgY~Ph~A~LvVsA~~Gi-~~tTrEHLgl~~AL~iPfF-vlvtK~  313 (591)
T KOG1143|consen  242 EIVEKSSKLVTFI-DLAGHAKYQ-----KTTIHGLTGYTPHFACLVVSADRGI-TWTTREHLGLIAALNIPFF-VLVTKM  313 (591)
T ss_pred             HHHhhhcceEEEe-ecccchhhh-----eeeeeecccCCCceEEEEEEcCCCC-ccccHHHHHHHHHhCCCeE-EEEEee
Confidence            4555555556666 999999999     88888866          8999998 8899999999999999955 568999


Q ss_pred             CCCChhhHHHHHHHHHhhh
Q psy13818        188 DLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       188 DlV~~~~~~~~~~eI~~~l  206 (207)
                      |+++..-++....++.+++
T Consensus       314 Dl~~~~~~~~tv~~l~nll  332 (591)
T KOG1143|consen  314 DLVDRQGLKKTVKDLSNLL  332 (591)
T ss_pred             ccccchhHHHHHHHHHHHH
Confidence            9999866666666666554

>PTZ00416 elongation factor 2; Provisional

Probab=97.87  E-value=1.7e-05  Score=80.02  Aligned_cols=59  Identities=19%  Similarity=0.108  Sum_probs=49.1

Q ss_pred             CcEEEEEEeecCcceeeccccccccccc------ee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCC
Q psy13818        124 NEKIALSRRVEKHWSLIEGTVTTKVLST------RK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLV  190 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg~~~~nMiaG------a~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV  190 (207)
                      +.++.++ +.|||-+|+     .+|.++      |.  |||.+|+ ++||++|+..+...++ .+|+++||||+.
T Consensus        91 ~~~i~li-DtPG~~~f~-----~~~~~al~~~D~ailVvda~~g~-~~~t~~~~~~~~~~~~-p~iv~iNK~D~~  157 (836)
T PTZ00416         91 PFLINLI-DSPGHVDFS-----SEVTAALRVTDGALVVVDCVEGV-CVQTETVLRQALQERI-RPVLFINKVDRA  157 (836)
T ss_pred             ceEEEEE-cCCCHHhHH-----HHHHHHHhcCCeEEEEEECCCCc-CccHHHHHHHHHHcCC-CEEEEEEChhhh
Confidence            4567887 999999999     555444      33  8999997 9999999999999996 468889999997

>PRK07560 elongation factor EF-2; Reviewed

Probab=97.81  E-value=3e-05  Score=76.91  Aligned_cols=64  Identities=19%  Similarity=0.170  Sum_probs=49.3

Q ss_pred             CcEEEEEEeecCcceeeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCC
Q psy13818        124 NEKIALSRRVEKHWSLIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLV  190 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV  190 (207)
                      +.++.++ +.|||.+|.+=... -+..++|.  ||+.+|+ ++||++|+..+...|++ .||++||||+.
T Consensus        86 ~~~i~li-DtPG~~df~~~~~~~l~~~D~avlVvda~~g~-~~~t~~~~~~~~~~~~~-~iv~iNK~D~~  152 (731)
T PRK07560         86 EYLINLI-DTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGV-MPQTETVLRQALRERVK-PVLFINKVDRL  152 (731)
T ss_pred             cEEEEEE-cCCCccChHHHHHHHHHhcCEEEEEEECCCCC-CccHHHHHHHHHHcCCC-eEEEEECchhh
Confidence            4567777 99999999831111 23334444  8999996 99999999999889998 58899999987

>PRK04004 translation initiation factor IF-2; Validated

Probab=97.78  E-value=3.9e-05  Score=74.82  Aligned_cols=56  Identities=23%  Similarity=0.220  Sum_probs=46.7

Q ss_pred             EEEEEeecCcceeeccccccccccc------ee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCC
Q psy13818        127 IALSRRVEKHWSLIEGTVTTKVLST------RK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLV  190 (207)
Q Consensus       127 iaIsR~V~gh~rligg~~~~nMiaG------a~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV  190 (207)
                      +.+. +.|||.+|.     ..+..|      +.  +|+++|. +|||.+|+.+++..+++ +||++||+|+.
T Consensus        73 i~~i-DTPG~e~f~-----~~~~~~~~~aD~~IlVvDa~~g~-~~qt~e~i~~~~~~~vp-iIvviNK~D~~  136 (586)
T PRK04004         73 LLFI-DTPGHEAFT-----NLRKRGGALADIAILVVDINEGF-QPQTIEAINILKRRKTP-FVVAANKIDRI  136 (586)
T ss_pred             EEEE-ECCChHHHH-----HHHHHhHhhCCEEEEEEECCCCC-CHhHHHHHHHHHHcCCC-EEEEEECcCCc
Confidence            5565 999999998     444444      22  8999996 99999999999999998 89999999986

>KOG1145|consensus

Probab=97.76  E-value=6.7e-05  Score=73.97  Aligned_cols=71  Identities=18%  Similarity=0.264  Sum_probs=56.8

Q ss_pred             eEEEEeeCcccccCCcEEEEEEeecCcceeeccccccccc-ccee--------eecCCCCCCCchHHHHHHHHHcCCCeE
Q psy13818        110 LAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVL-STRK--------RTGNESCPQPQTSEHLAAIEIMKLKHI  180 (207)
Q Consensus       110 la~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMi-aGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~i  180 (207)
                      .+-...+.|    .|.++.|. +-|||.-|-      .|= -||.        |+|++|+ ||||.|-..-++--+++ +
T Consensus       190 IGAF~V~~p----~G~~iTFL-DTPGHaAF~------aMRaRGA~vtDIvVLVVAadDGV-mpQT~EaIkhAk~A~Vp-i  256 (683)
T KOG1145|consen  190 IGAFTVTLP----SGKSITFL-DTPGHAAFS------AMRARGANVTDIVVLVVAADDGV-MPQTLEAIKHAKSANVP-I  256 (683)
T ss_pred             eceEEEecC----CCCEEEEe-cCCcHHHHH------HHHhccCccccEEEEEEEccCCc-cHhHHHHHHHHHhcCCC-E
Confidence            334445556    79999999 999999987      232 2333        8889998 99999999999999997 9


Q ss_pred             EEEEecCCCCChh
Q psy13818        181 IILQNKIDLVKEG  193 (207)
Q Consensus       181 IV~vNK~DlV~~~  193 (207)
                      ||++||+|....+
T Consensus       257 VvAinKiDkp~a~  269 (683)
T KOG1145|consen  257 VVAINKIDKPGAN  269 (683)
T ss_pred             EEEEeccCCCCCC
Confidence            9999999976544

>cd04169 RF3 RF3 subfamily

Probab=97.68  E-value=9.4e-05  Score=65.15  Aligned_cols=82  Identities=18%  Similarity=0.149  Sum_probs=58.9

Q ss_pred             cccCCcEEEEEEeecCcceeec--ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhH
Q psy13818        120 CTEVNEKIALSRRVEKHWSLIE--GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQA  195 (207)
Q Consensus       120 c~~~G~kiaIsR~V~gh~rlig--g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~  195 (207)
                      |.+.+.++.+. +.|||.+|.+  +...++ .+++.  +|+.++. ++||.+++..++..+++ +++++||+|+...+. 
T Consensus        66 ~~~~~~~i~li-DTPG~~df~~~~~~~l~~-aD~~IlVvda~~g~-~~~~~~i~~~~~~~~~P-~iivvNK~D~~~a~~-  140 (267)
T cd04169          66 FEYRDCVINLL-DTPGHEDFSEDTYRTLTA-VDSAVMVIDAAKGV-EPQTRKLFEVCRLRGIP-IITFINKLDREGRDP-  140 (267)
T ss_pred             EeeCCEEEEEE-ECCCchHHHHHHHHHHHH-CCEEEEEEECCCCc-cHHHHHHHHHHHhcCCC-EEEEEECCccCCCCH-
Confidence            34467788887 9999999884  111132 24444  8898986 89999999999999998 778999999865432 


Q ss_pred             HHHHHHHHhhh
Q psy13818        196 NEQHEQIVKFV  206 (207)
Q Consensus       196 ~~~~~eI~~~l  206 (207)
                      .+..+++++.+
T Consensus       141 ~~~~~~l~~~l  151 (267)
T cd04169         141 LELLDEIEEEL  151 (267)
T ss_pred             HHHHHHHHHHH
Confidence            23456666654

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>TIGR00484 EF-G translation elongation factor EF-G

Probab=97.66  E-value=0.00011  Score=72.39  Aligned_cols=80  Identities=16%  Similarity=0.127  Sum_probs=59.8

Q ss_pred             CCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHH
Q psy13818        123 VNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQH  199 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~  199 (207)
                      .+.++.++ +.|||.+|.+ +.-.-..++++.  ||+.+|. ++||.+++..++..+++. |+++||+|+.+.+ ..+..
T Consensus        73 ~~~~i~li-DTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~p~-ivviNK~D~~~~~-~~~~~  148 (689)
T TIGR00484        73 KGHRINII-DTPGHVDFTVEVERSLRVLDGAVAVLDAVGGV-QPQSETVWRQANRYEVPR-IAFVNKMDKTGAN-FLRVV  148 (689)
T ss_pred             CCeEEEEE-ECCCCcchhHHHHHHHHHhCEEEEEEeCCCCC-ChhHHHHHHHHHHcCCCE-EEEEECCCCCCCC-HHHHH
Confidence            36688887 9999999885 211123345555  9999996 999999999999999986 5689999998755 34556


Q ss_pred             HHHHhhh
Q psy13818        200 EQIVKFV  206 (207)
Q Consensus       200 ~eI~~~l  206 (207)
                      ++|++.+
T Consensus       149 ~~i~~~l  155 (689)
T TIGR00484       149 NQIKQRL  155 (689)
T ss_pred             HHHHHHh
Confidence            6676643

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=97.66  E-value=6.5e-05  Score=72.47  Aligned_cols=82  Identities=17%  Similarity=0.138  Sum_probs=60.7

Q ss_pred             cccCCcEEEEEEeecCcceeec--ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhH
Q psy13818        120 CTEVNEKIALSRRVEKHWSLIE--GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQA  195 (207)
Q Consensus       120 c~~~G~kiaIsR~V~gh~rlig--g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~  195 (207)
                      +.+.+.++.+. +.|||.+|.+  +...+ ..+++.  ||+.+|+ ++||++++..++..+++ +|+++||||+...+. 
T Consensus        74 ~~~~~~~inli-DTPG~~df~~~~~~~l~-~aD~aIlVvDa~~gv-~~~t~~l~~~~~~~~iP-iiv~iNK~D~~~a~~-  148 (526)
T PRK00741         74 FPYRDCLINLL-DTPGHEDFSEDTYRTLT-AVDSALMVIDAAKGV-EPQTRKLMEVCRLRDTP-IFTFINKLDRDGREP-  148 (526)
T ss_pred             EEECCEEEEEE-ECCCchhhHHHHHHHHH-HCCEEEEEEecCCCC-CHHHHHHHHHHHhcCCC-EEEEEECCcccccCH-
Confidence            34567788887 9999999885  22113 235555  8999997 99999999999999998 889999999876442 


Q ss_pred             HHHHHHHHhhh
Q psy13818        196 NEQHEQIVKFV  206 (207)
Q Consensus       196 ~~~~~eI~~~l  206 (207)
                      .+..++|++.+
T Consensus       149 ~~~l~~i~~~l  159 (526)
T PRK00741        149 LELLDEIEEVL  159 (526)
T ss_pred             HHHHHHHHHHh
Confidence            34456666543

>PRK05433 GTP-binding protein LepA; Provisional

Probab=97.63  E-value=0.00011  Score=71.83  Aligned_cols=76  Identities=17%  Similarity=0.104  Sum_probs=54.7

Q ss_pred             cEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHH
Q psy13818        125 EKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQ  201 (207)
Q Consensus       125 ~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~e  201 (207)
                      .++.|. +.|||.+|.+ +.-.-...+|+.  ||+.+|. ++||.+|+..+...+++ +|+|+||+|+.+.+. ++..++
T Consensus        74 ~~lnLi-DTPGh~dF~~~v~~sl~~aD~aILVVDas~gv-~~qt~~~~~~~~~~~lp-iIvViNKiDl~~a~~-~~v~~e  149 (600)
T PRK05433         74 YILNLI-DTPGHVDFSYEVSRSLAACEGALLVVDASQGV-EAQTLANVYLALENDLE-IIPVLNKIDLPAADP-ERVKQE  149 (600)
T ss_pred             EEEEEE-ECCCcHHHHHHHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEEEECCCCCcccH-HHHHHH
Confidence            356776 9999999985 332222335555  9999997 99999999998888987 889999999975431 223344


Q ss_pred             HHh
Q psy13818        202 IVK  204 (207)
Q Consensus       202 I~~  204 (207)
                      +.+
T Consensus       150 i~~  152 (600)
T PRK05433        150 IED  152 (600)
T ss_pred             HHH
Confidence            444

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=97.57  E-value=0.00013  Score=73.11  Aligned_cols=82  Identities=20%  Similarity=0.135  Sum_probs=62.8

Q ss_pred             ccccCC-cEEEEEEeecCcceeecccccc--cccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        119 VCTEVN-EKIALSRRVEKHWSLIEGTVTT--KVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       119 vc~~~G-~kiaIsR~V~gh~rligg~~~~--nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      .|.|.| .++-++ +.|||-+|. ..+.+  -.++||.  +||.+|+ +|||.-=..-+.-.+++. |+++||||....+
T Consensus        69 s~~~~~~~~iNlI-DTPGHVDFt-~EV~rslrvlDgavvVvdaveGV-~~QTEtv~rqa~~~~vp~-i~fiNKmDR~~a~  144 (697)
T COG0480          69 TLFWKGDYRINLI-DTPGHVDFT-IEVERSLRVLDGAVVVVDAVEGV-EPQTETVWRQADKYGVPR-ILFVNKMDRLGAD  144 (697)
T ss_pred             EEEEcCceEEEEe-CCCCccccH-HHHHHHHHhhcceEEEEECCCCe-eecHHHHHHHHhhcCCCe-EEEEECccccccC
Confidence            355665 799998 999999999 44443  3457776  9999998 999999999999999985 5679999987755


Q ss_pred             hHHHHHHHHHhh
Q psy13818        194 QANEQHEQIVKF  205 (207)
Q Consensus       194 ~~~~~~~eI~~~  205 (207)
                      . ....+++++.
T Consensus       145 ~-~~~~~~l~~~  155 (697)
T COG0480         145 F-YLVVEQLKER  155 (697)
T ss_pred             h-hhhHHHHHHH
Confidence            2 3344455443

>PRK14845 translation initiation factor IF-2; Provisional

Probab=97.57  E-value=0.00018  Score=74.91  Aligned_cols=57  Identities=23%  Similarity=0.257  Sum_probs=46.6

Q ss_pred             EEEEEeecCcceeeccccccccccc------ee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC
Q psy13818        127 IALSRRVEKHWSLIEGTVTTKVLST------RK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK  191 (207)
Q Consensus       127 iaIsR~V~gh~rligg~~~~nMiaG------a~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~  191 (207)
                      +.|. +.|||++|.     ..+..|      +.  +|+++|. +|||.||+.+++..+++ +|+|+||+|++.
T Consensus       528 i~fi-DTPGhe~F~-----~lr~~g~~~aDivlLVVDa~~Gi-~~qT~e~I~~lk~~~iP-iIVViNKiDL~~  592 (1049)
T PRK14845        528 LLFI-DTPGHEAFT-----SLRKRGGSLADLAVLVVDINEGF-KPQTIEAINILRQYKTP-FVVAANKIDLIP  592 (1049)
T ss_pred             EEEE-ECCCcHHHH-----HHHHhhcccCCEEEEEEECcccC-CHhHHHHHHHHHHcCCC-EEEEEECCCCcc
Confidence            5665 999999997     333333      22  8899996 99999999999999986 999999999974

>KOG0463|consensus

Probab=97.56  E-value=0.00019  Score=68.91  Aligned_cols=81  Identities=15%  Similarity=0.272  Sum_probs=64.6

Q ss_pred             ccccCCcEEEEEEeecCcceeecccccccccccee----------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCC
Q psy13818        119 VCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK----------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKID  188 (207)
Q Consensus       119 vc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~----------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~D  188 (207)
                      +|..+-.-+.++ +..||++|.     ++-+-|..          |.||-|+ -..|+||+-++-.|.++ +.||++|+|
T Consensus       213 Ice~saKviTFI-DLAGHEkYL-----KTTvFGMTGH~PDf~MLMiGaNaGI-iGmTKEHLgLALaL~VP-VfvVVTKID  284 (641)
T KOG0463|consen  213 ICEDSAKVITFI-DLAGHEKYL-----KTTVFGMTGHMPDFTMLMIGANAGI-IGMTKEHLGLALALHVP-VFVVVTKID  284 (641)
T ss_pred             eccccceeEEEE-eccchhhhh-----heeeeccccCCCCceEEEecccccc-eeccHHhhhhhhhhcCc-EEEEEEeec
Confidence            466666667776 999999999     76655543          8899997 89999999999999998 456789999


Q ss_pred             CCChhhHHHHHHHHHhhhC
Q psy13818        189 LVKEGQANEQHEQIVKFVQ  207 (207)
Q Consensus       189 lV~~~~~~~~~~eI~~~l~  207 (207)
                      ++-.+-+++...-+..+++
T Consensus       285 MCPANiLqEtmKll~rllk  303 (641)
T KOG0463|consen  285 MCPANILQETMKLLTRLLK  303 (641)
T ss_pred             cCcHHHHHHHHHHHHHHhc
Confidence            9998877777666665553

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=97.55  E-value=0.00023  Score=57.96  Aligned_cols=65  Identities=25%  Similarity=0.157  Sum_probs=48.1

Q ss_pred             CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      +.++.+. +.+||.+|.. +... ++. .++.  +|+.++. .+|+.+++..+...+++ +++|+||+|+.+.
T Consensus        64 ~~~~~l~-DtpG~~~~~~~~~~~~~~~-d~~ilV~d~~~~~-~~~~~~~~~~~~~~~~p-~iiv~NK~Dl~~~  132 (194)
T cd01891          64 DTKINIV-DTPGHADFGGEVERVLSMV-DGVLLLVDASEGP-MPQTRFVLKKALELGLK-PIVVINKIDRPDA  132 (194)
T ss_pred             CEEEEEE-ECCCcHHHHHHHHHHHHhc-CEEEEEEECCCCc-cHHHHHHHHHHHHcCCC-EEEEEECCCCCCC
Confidence            4567776 9999999875 2222 333 4444  8888885 89999988887778887 6788999999753

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>cd04167 Snu114p Snu114p subfamily

Probab=97.51  E-value=0.00021  Score=59.56  Aligned_cols=63  Identities=13%  Similarity=0.116  Sum_probs=45.9

Q ss_pred             cEEEEEEeecCcceeeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCC
Q psy13818        125 EKIALSRRVEKHWSLIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLV  190 (207)
Q Consensus       125 ~kiaIsR~V~gh~rligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV  190 (207)
                      .++.+. +.|||.+|...... ....+++.  +|+.++. ..|+.+++..+...+ ..+++++||+|++
T Consensus        71 ~~i~ii-DtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~-~~~~~~~~~~~~~~~-~p~iiviNK~D~~  136 (213)
T cd04167          71 YLFNII-DTPGHVNFMDEVAAALRLSDGVVLVVDVVEGV-TSNTERLIRHAILEG-LPIVLVINKIDRL  136 (213)
T ss_pred             EEEEEE-ECCCCcchHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHHcC-CCEEEEEECcccC
Confidence            356665 99999998732211 22233433  8898886 889999988888778 5688999999987

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>TIGR01393 lepA GTP-binding protein LepA

Probab=97.47  E-value=0.00023  Score=69.61  Aligned_cols=64  Identities=19%  Similarity=0.096  Sum_probs=48.6

Q ss_pred             EEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      ++.|. +.|||.+|.+ +.-.-....++.  +|+++|. ++||.+|+..+...+++ +|+|+||+|+.+.
T Consensus        71 ~l~li-DTPG~~dF~~~v~~~l~~aD~aILVvDat~g~-~~qt~~~~~~~~~~~ip-iIiViNKiDl~~~  137 (595)
T TIGR01393        71 VLNLI-DTPGHVDFSYEVSRSLAACEGALLLVDAAQGI-EAQTLANVYLALENDLE-IIPVINKIDLPSA  137 (595)
T ss_pred             EEEEE-ECCCcHHHHHHHHHHHHhCCEEEEEecCCCCC-CHhHHHHHHHHHHcCCC-EEEEEECcCCCcc
Confidence            56676 9999999984 222212234444  8999996 99999999888888886 8899999999754

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=97.38  E-value=0.00059  Score=53.35  Aligned_cols=80  Identities=26%  Similarity=0.246  Sum_probs=54.5

Q ss_pred             CcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHH
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHE  200 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~  200 (207)
                      +.++.+. +.+|+.++.. +...-....++.  +|+.++. ++|..+++..+...+ ..+++++||+|+.+++......+
T Consensus        61 ~~~~~li-DtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~~~~~~~~~-~~i~iv~nK~D~~~~~~~~~~~~  137 (189)
T cd00881          61 DRRVNFI-DTPGHEDFSSEVIRGLSVSDGAILVVDANEGV-QPQTREHLRIAREGG-LPIIVAINKIDRVGEEDLEEVLR  137 (189)
T ss_pred             CEEEEEE-eCCCcHHHHHHHHHHHHhcCEEEEEEECCCCC-cHHHHHHHHHHHHCC-CCeEEEEECCCCcchhcHHHHHH
Confidence            4467776 8888766653 222222334444  8888886 889999988888744 57999999999998655555555


Q ss_pred             HHHhhh
Q psy13818        201 QIVKFV  206 (207)
Q Consensus       201 eI~~~l  206 (207)
                      ++++.+
T Consensus       138 ~~~~~~  143 (189)
T cd00881         138 EIKELL  143 (189)
T ss_pred             HHHHHH
Confidence            665544

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=97.36  E-value=0.00032  Score=60.64  Aligned_cols=80  Identities=11%  Similarity=0.098  Sum_probs=56.1

Q ss_pred             CCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHH
Q psy13818        123 VNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQH  199 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~  199 (207)
                      .+.++.+. +.|||-+|.+ ..-.-...+++.  +++.++. +.||.+++..++..|++.+ +++||+|+...+ .++..
T Consensus        62 ~~~~i~li-DtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~-~~~~~~~~~~~~~~~~p~i-ivvNK~D~~~~~-~~~~~  137 (268)
T cd04170          62 KGHKINLI-DTPGYADFVGETRAALRAADAALVVVSAQSGV-EVGTEKLWEFADEAGIPRI-IFINKMDRERAD-FDKTL  137 (268)
T ss_pred             CCEEEEEE-ECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCC-CHHHHHHHHHHHHcCCCEE-EEEECCccCCCC-HHHHH
Confidence            45677776 9999988763 111112223333  8888886 8999999999999998755 599999998754 34556


Q ss_pred             HHHHhhh
Q psy13818        200 EQIVKFV  206 (207)
Q Consensus       200 ~eI~~~l  206 (207)
                      +++++.+
T Consensus       138 ~~l~~~~  144 (268)
T cd04170         138 AALQEAF  144 (268)
T ss_pred             HHHHHHh
Confidence            6676654

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>TIGR00503 prfC peptide chain release factor 3

Probab=97.33  E-value=0.00046  Score=66.70  Aligned_cols=80  Identities=13%  Similarity=0.103  Sum_probs=57.3

Q ss_pred             CCcEEEEEEeecCcceeeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHH
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQH  199 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~  199 (207)
                      .+.++.+. +.|||.+|.+-... -...+++.  ||+.+|. .+||.+++.+++..+++ +|+++||+|+...+ .++..
T Consensus        78 ~~~~inli-DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~~t~~l~~~~~~~~~P-iivviNKiD~~~~~-~~~ll  153 (527)
T TIGR00503        78 RDCLVNLL-DTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGV-ETRTRKLMEVTRLRDTP-IFTFMNKLDRDIRD-PLELL  153 (527)
T ss_pred             CCeEEEEE-ECCChhhHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHhcCCC-EEEEEECccccCCC-HHHHH
Confidence            46678887 99999988841111 12334544  8999996 99999999999999987 88899999996433 23455


Q ss_pred             HHHHhhh
Q psy13818        200 EQIVKFV  206 (207)
Q Consensus       200 ~eI~~~l  206 (207)
                      ++|++.+
T Consensus       154 ~~i~~~l  160 (527)
T TIGR00503       154 DEVENEL  160 (527)
T ss_pred             HHHHHHh
Confidence            6666554

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=97.30  E-value=0.00042  Score=68.85  Aligned_cols=67  Identities=18%  Similarity=0.134  Sum_probs=50.6

Q ss_pred             cCCcEEEEEEeecCcceeeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC
Q psy13818        122 EVNEKIALSRRVEKHWSLIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK  191 (207)
Q Consensus       122 ~~G~kiaIsR~V~gh~rligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~  191 (207)
                      +.+.++.+. +.|||.+|.+-... -...+++.  +|+.+|+ ++||.+|+..+...+++. |+++||||...
T Consensus        83 ~~~~~i~li-DTPG~~~f~~~~~~al~~aD~~llVvda~~g~-~~~t~~~~~~~~~~~~p~-ivviNKiD~~~  152 (720)
T TIGR00490        83 GNEYLINLI-DTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGV-MPQTETVLRQALKENVKP-VLFINKVDRLI  152 (720)
T ss_pred             CCceEEEEE-eCCCccccHHHHHHHHHhcCEEEEEEecCCCC-CccHHHHHHHHHHcCCCE-EEEEEChhccc
Confidence            456688887 99999998831111 12223433  8899997 999999999988889986 59999999874

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=97.27  E-value=0.00025  Score=69.56  Aligned_cols=62  Identities=21%  Similarity=0.248  Sum_probs=46.6

Q ss_pred             EEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC
Q psy13818        127 IALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK  191 (207)
Q Consensus       127 iaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~  191 (207)
                      +.|. +.|||++|.. +.-.-...+++.  +|+++|. +|||.||+.+++..+++ +||++||+|+++
T Consensus        71 l~~i-DTpG~e~f~~l~~~~~~~aD~~IlVvD~~~g~-~~qt~e~i~~l~~~~vp-iIVv~NK~Dl~~  135 (590)
T TIGR00491        71 LLFI-DTPGHEAFTNLRKRGGALADLAILIVDINEGF-KPQTQEALNILRMYKTP-FVVAANKIDRIP  135 (590)
T ss_pred             EEEE-ECCCcHhHHHHHHHHHhhCCEEEEEEECCcCC-CHhHHHHHHHHHHcCCC-EEEEEECCCccc
Confidence            5565 9999999982 111111222322  8899996 99999999999999986 899999999974

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=97.12  E-value=0.0016  Score=50.22  Aligned_cols=66  Identities=17%  Similarity=0.182  Sum_probs=46.5

Q ss_pred             CcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      +.++.+. +.+|+.+|-. +...-...+++.  +|++++. .+|+.+++..++..+++ +++++||+|+.+.
T Consensus        49 ~~~~~ii-DtpG~~~~~~~~~~~~~~~d~il~v~d~~~~~-~~~~~~~~~~~~~~~~p-~ivv~NK~Dl~~~  117 (168)
T cd01887          49 IPGITFI-DTPGHEAFTNMRARGASLTDIAILVVAADDGV-MPQTIEAIKLAKAANVP-FIVALNKIDKPNA  117 (168)
T ss_pred             cceEEEE-eCCCcHHHHHHHHHHHhhcCEEEEEEECCCCc-cHHHHHHHHHHHHcCCC-EEEEEEceecccc
Confidence            5567766 8888866542 111112222333  8888886 89999999999999875 8899999999854

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>PRK13351 elongation factor G; Reviewed

Probab=97.11  E-value=0.0011  Score=65.15  Aligned_cols=80  Identities=21%  Similarity=0.182  Sum_probs=59.6

Q ss_pred             CCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHH
Q psy13818        123 VNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQH  199 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~  199 (207)
                      .+.++.+. +.|||-+|.+ +.-.-...+|+.  +|+.++. ++||.+++..+...+++. ++++||+|+...+ ..+..
T Consensus        71 ~~~~i~li-DtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~-~~~~~~~~~~~~~~~~p~-iiviNK~D~~~~~-~~~~~  146 (687)
T PRK13351         71 DNHRINLI-DTPGHIDFTGEVERSLRVLDGAVVVFDAVTGV-QPQTETVWRQADRYGIPR-LIFINKMDRVGAD-LFKVL  146 (687)
T ss_pred             CCEEEEEE-ECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCC-CHHHHHHHHHHHhcCCCE-EEEEECCCCCCCC-HHHHH
Confidence            36678876 9999998885 222233345655  8999996 999999999999999985 5789999998754 34566


Q ss_pred             HHHHhhh
Q psy13818        200 EQIVKFV  206 (207)
Q Consensus       200 ~eI~~~l  206 (207)
                      ++|++.+
T Consensus       147 ~~i~~~l  153 (687)
T PRK13351        147 EDIEERF  153 (687)
T ss_pred             HHHHHHH
Confidence            6777654

>cd01890 LepA LepA subfamily

Probab=97.05  E-value=0.0018  Score=50.85  Aligned_cols=63  Identities=19%  Similarity=0.117  Sum_probs=44.3

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      ++.+. +.+||.+|.. +.-. ++ .+++.  +|+.++. ..|+.+++..+...+++ +|+++||+|+.+.
T Consensus        68 ~~~l~-Dt~G~~~~~~~~~~~~~~-ad~~i~v~D~~~~~-~~~~~~~~~~~~~~~~~-iiiv~NK~Dl~~~  134 (179)
T cd01890          68 LLNLI-DTPGHVDFSYEVSRSLAA-CEGALLLVDATQGV-EAQTLANFYLALENNLE-IIPVINKIDLPSA  134 (179)
T ss_pred             EEEEE-ECCCChhhHHHHHHHHHh-cCeEEEEEECCCCc-cHhhHHHHHHHHHcCCC-EEEEEECCCCCcC
Confidence            45565 8899988864 1111 22 23333  8888875 78999998877777876 7889999999753

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=96.99  E-value=0.0022  Score=51.55  Aligned_cols=56  Identities=20%  Similarity=0.173  Sum_probs=43.5

Q ss_pred             cccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818        149 LSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       149 iaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~l  206 (207)
                      ..++.  +|++.+. ..++.+++..+...+++ +++++||+|+.++++.+...+++++.+
T Consensus       101 ~~~ii~vvd~~~~~-~~~~~~~~~~~~~~~~p-viiv~nK~D~~~~~~~~~~~~~i~~~l  158 (179)
T TIGR03598       101 LKGVVLLMDIRHPL-KELDLEMLEWLRERGIP-VLIVLTKADKLKKSELNKQLKKIKKAL  158 (179)
T ss_pred             hcEEEEEecCCCCC-CHHHHHHHHHHHHcCCC-EEEEEECcccCCHHHHHHHHHHHHHHH
Confidence            34555  8888775 88888888888888876 889999999998776666677777765

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>cd03707 EFTU_III Domain III of elongation factor (EF) Tu

Probab=96.91  E-value=0.0027  Score=46.67  Aligned_cols=52  Identities=15%  Similarity=0.187  Sum_probs=42.5

Q ss_pred             eccCccCceEEEEeeccccceEEEEEe-------cceE--EEEeeCcccccCCcEEEEEEee
Q psy13818         81 VQKLTRNEVLLVNIGSLSTGGRVLATK-------ADLA--KISLTNPVCTEVNEKIALSRRV  133 (207)
Q Consensus        81 v~~l~~~E~lmlniGs~~t~g~V~~~~-------~Dla--~i~L~~Pvc~~~G~kiaIsR~V  133 (207)
                      -.+|+.|..+++.+||+.+.|++....       .|.+  ++.|..|+|.+.|.|..+ |+-
T Consensus        21 ~~~i~~g~~~~l~~gt~~~~~~i~~l~~~~~i~~g~~~~v~l~l~~pv~~~~~~rf~l-R~~   81 (90)
T cd03707          21 HTPFFSGYRPQFYIRTTDVTGSITLPEGTEMVMPGDNVKMTVELIHPIALEKGLRFAI-REG   81 (90)
T ss_pred             CCcccCCceeEEEeccCeEEEEEEccCcccccCCCCEEEEEEEECCcEEEecCCEEEE-ecC
Confidence            479999999999999999999998864       3444  555569999999999887 444

Ef-Tu consists of three structural domains, designated I, II and III. Domain III adopts a beta barrel structure. Domain III is involved in binding to both charged tRNA and binding to elongation factor Ts (EF-Ts). EF-Ts is the guanine-nucleotide-exchange factor for EF-Tu. EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Crystallographic studies revealed structural similarities ("molecular mimicry") between tertiary structures of EF-G and the EF-Tu-aminoacyl-tRNA ternary complex. Domains III, IV, and V of EF-G mimic the tRNA structure in the EF-Tu ternary complex; domains III, IV and V can be related to the acceptor stem, anticodon helix

>cd03706 mtEFTU_III Domain III of mitochondrial EF-TU (mtEF-TU)

Probab=96.78  E-value=0.0042  Score=46.10  Aligned_cols=60  Identities=17%  Similarity=0.171  Sum_probs=48.0

Q ss_pred             eccCccCceEEEEeeccccceEEEEEe-------cc--eEEEEeeCcccccCCcEEEEEEeecCcceeec-ccc
Q psy13818         81 VQKLTRNEVLLVNIGSLSTGGRVLATK-------AD--LAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTV  144 (207)
Q Consensus        81 v~~l~~~E~lmlniGs~~t~g~V~~~~-------~D--la~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~  144 (207)
                      -.+|+.|..+.+.+||+.+.|+|....       .|  .+++.|..|+|.+.|.|..+ |+-.   +.|| |.|
T Consensus        21 ~~~i~~g~~~~~~~~t~~~~~~i~~~~~~~~l~~g~~~~v~i~l~~p~~~~~g~rf~l-R~~~---~tvg~G~V   90 (93)
T cd03706          21 HKPFVSNFQPQMFSLTWDCAARIDLPPGKEMVMPGEDTKVTLILRRPMVLEKGQRFTL-RDGN---RTIGTGLV   90 (93)
T ss_pred             CccccCCCeeEEEeccceEEEEEECCCCCcEeCCCCEEEEEEEECCcEEEeeCCEEEE-EECC---EEEEEEEE
Confidence            489999999999999999999988864       33  45556669999999999887 5444   6787 665

mtEF-TU is highly conserved and is 55-60% identical to bacterial EF-TU. The overall structure is similar to that observed in the Escherichia coli and Thermus aquaticus EF-TU. However, compared with that observed in prokaryotic EF-TU the nucleotide-binding domain (domain I) of EF-TUmt is in a different orientation relative to the rest of the structure. Furthermore, domain III is followed by a short 11-amino acid extension that forms one helical turn. This extension seems to be specific to the mitochondrial factors and has not been observed in any of the prokaryotic factors.

>PRK12740 elongation factor G; Reviewed

Probab=96.78  E-value=0.0024  Score=62.36  Aligned_cols=81  Identities=20%  Similarity=0.126  Sum_probs=56.8

Q ss_pred             cCCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHH
Q psy13818        122 EVNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQ  198 (207)
Q Consensus       122 ~~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~  198 (207)
                      +.+.++.++ +.|||-+|.+ +.-.-...+++.  +|+.++. +.||.+++..+...+++. |+++||+|+...+ ..+.
T Consensus        57 ~~~~~i~li-DtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~-~~~~~~~~~~~~~~~~p~-iiv~NK~D~~~~~-~~~~  132 (668)
T PRK12740         57 WKGHKINLI-DTPGHVDFTGEVERALRVLDGAVVVVCAVGGV-EPQTETVWRQAEKYGVPR-IIFVNKMDRAGAD-FFRV  132 (668)
T ss_pred             ECCEEEEEE-ECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCc-CHHHHHHHHHHHHcCCCE-EEEEECCCCCCCC-HHHH
Confidence            456788887 9999988774 111122234444  8899986 999999999999999875 5589999998644 2344


Q ss_pred             HHHHHhhh
Q psy13818        199 HEQIVKFV  206 (207)
Q Consensus       199 ~~eI~~~l  206 (207)
                      .+++++++
T Consensus       133 ~~~l~~~l  140 (668)
T PRK12740        133 LAQLQEKL  140 (668)
T ss_pred             HHHHHHHH
Confidence            55565543

>CHL00071 tufA elongation factor Tu

Probab=96.69  E-value=0.0038  Score=57.96  Aligned_cols=97  Identities=19%  Similarity=0.248  Sum_probs=72.7

Q ss_pred             cccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceE
Q psy13818         11 RADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVL   90 (207)
Q Consensus        11 ~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~l   90 (207)
                      +.|--.|.|++.++.+| ...+++.+..+|+..=                                 .....+|+.|...
T Consensus       294 ~~~i~~G~vl~~~~~~~-~~~~f~a~i~~l~~~~---------------------------------~~~~~~i~~g~~~  339 (409)
T CHL00071        294 KEDIERGMVLAKPGTIT-PHTKFEAQVYILTKEE---------------------------------GGRHTPFFPGYRP  339 (409)
T ss_pred             HHHcCCeEEEecCCCCC-cceEEEEEEEEEeccc---------------------------------CCccccccCCceE
Confidence            45566799999998754 5688888887763311                                 0125789999999


Q ss_pred             EEEeeccccceEEEEEec------------c--eEEEEeeCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818         91 LVNIGSLSTGGRVLATKA------------D--LAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVT  145 (207)
Q Consensus        91 mlniGs~~t~g~V~~~~~------------D--la~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~  145 (207)
                      ++.+|+....|+|..+..            |  .+++.|..|+|.+.|.|..+ |+-   ++.+| |.|.
T Consensus       340 ~~~~gt~~~~~~i~~i~~~~~~~~~~l~~g~~a~v~l~~~~pi~~e~~~rfil-R~~---~~tig~G~V~  405 (409)
T CHL00071        340 QFYVRTTDVTGKIESFTADDGSKTEMVMPGDRIKMTVELIYPIAIEKGMRFAI-REG---GRTVGAGVVS  405 (409)
T ss_pred             EEEEcccEEEEEEEEEcccCCCCCcEecCCCEEEEEEEECCeEEEeeCCEEEE-ecC---CeEEEEEEEE
Confidence            999999999999999964            3  45667789999999988776 432   68887 6654

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=96.53  E-value=0.011  Score=58.12  Aligned_cols=90  Identities=19%  Similarity=0.194  Sum_probs=61.4

Q ss_pred             ecceEEEEeeCcccccCCcE--EEEEEeecCcceeecccccccccc--cee--eecCCCCCCCchHHHHHHHHHcCCCeE
Q psy13818        107 KADLAKISLTNPVCTEVNEK--IALSRRVEKHWSLIEGTVTTKVLS--TRK--RTGNESCPQPQTSEHLAAIEIMKLKHI  180 (207)
Q Consensus       107 ~~Dla~i~L~~Pvc~~~G~k--iaIsR~V~gh~rligg~~~~nMia--Ga~--V~A~eg~~~pQT~EHl~il~~lGI~~i  180 (207)
                      |...+.+..+..    .|+.  .-++ +.|||.+|. ..+-|...+  ||.  |||.+|+ +.||.-+.+++=-.+++ +
T Consensus        60 Kaq~v~l~Yk~~----~g~~Y~lnlI-DTPGHVDFs-YEVSRSLAACEGalLvVDAsQGv-eAQTlAN~YlAle~~Le-I  131 (603)
T COG0481          60 KAQAVRLNYKAK----DGETYVLNLI-DTPGHVDFS-YEVSRSLAACEGALLVVDASQGV-EAQTLANVYLALENNLE-I  131 (603)
T ss_pred             EeeEEEEEEEeC----CCCEEEEEEc-CCCCccceE-EEehhhHhhCCCcEEEEECccch-HHHHHHHHHHHHHcCcE-E
Confidence            444455544443    4553  3344 889999998 333354422  444  9999998 99999999999888885 8


Q ss_pred             EEEEecCCCCChhhHHHHHHHHHhh
Q psy13818        181 IILQNKIDLVKEGQANEQHEQIVKF  205 (207)
Q Consensus       181 IV~vNK~DlV~~~~~~~~~~eI~~~  205 (207)
                      |-|+||+||...+. +...+||.+.
T Consensus       132 iPViNKIDLP~Adp-ervk~eIe~~  155 (603)
T COG0481         132 IPVLNKIDLPAADP-ERVKQEIEDI  155 (603)
T ss_pred             EEeeecccCCCCCH-HHHHHHHHHH
Confidence            89999999976542 3444555543

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=96.27  E-value=0.0081  Score=58.35  Aligned_cols=80  Identities=16%  Similarity=0.175  Sum_probs=60.7

Q ss_pred             CCcEEEEEEeecCcceeeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHH
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQH  199 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~  199 (207)
                      .|..+-|. +-|||++|-.-+.- -.-++.|-  |||..|+ .|||+--+..|++=|++ ++-++||+|....+.+ +..
T Consensus        79 ~~~~iNLL-DTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGi-E~qT~KLfeVcrlR~iP-I~TFiNKlDR~~rdP~-ELL  154 (528)
T COG4108          79 ADCLVNLL-DTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGI-EPQTLKLFEVCRLRDIP-IFTFINKLDREGRDPL-ELL  154 (528)
T ss_pred             CCeEEecc-CCCCccccchhHHHHHHhhheeeEEEecccCc-cHHHHHHHHHHhhcCCc-eEEEeeccccccCChH-HHH
Confidence            46677887 99999999852221 12223333  9999998 99999999999999998 8889999999887764 455


Q ss_pred             HHHHhhh
Q psy13818        200 EQIVKFV  206 (207)
Q Consensus       200 ~eI~~~l  206 (207)
                      +||.+-|
T Consensus       155 dEiE~~L  161 (528)
T COG4108         155 DEIEEEL  161 (528)
T ss_pred             HHHHHHh
Confidence            6666544

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=96.17  E-value=0.013  Score=57.74  Aligned_cols=64  Identities=23%  Similarity=0.332  Sum_probs=55.1

Q ss_pred             eccCccCceEEEEeeccccceEEEEEecceEEEEeeCcccccCCcEEEEEEeecCcceeeccccc
Q psy13818         81 VQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVT  145 (207)
Q Consensus        81 v~~l~~~E~lmlniGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~  145 (207)
                      ..||+.++.+++.+||+.+.|+|..+..+.+.+.|..|+|+..|+|..| |+.+.+.-+=||.|.
T Consensus       275 ~~~l~~~~~~~~~~gt~~~~~~i~~l~~~~~~l~l~~p~~~~~gdr~il-r~~s~~~tigGg~Vl  338 (614)
T PRK10512        275 HTPLTQWQPLHIHHAASHVTGRVSLLEDNLAELVLDTPLWLADNDRLVL-RDISARNTLAGARVV  338 (614)
T ss_pred             CccCCCCCEEEEEEcccEEEEEEEEcCCeEEEEEECCcccccCCCEEEE-EeCCCCEEEEEEEEc
Confidence            4789999999999999999999999998999999999999999999888 676665444446665

>cd01882 BMS1 Bms1

Probab=95.97  E-value=0.02  Score=48.93  Aligned_cols=50  Identities=12%  Similarity=0.222  Sum_probs=39.1

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh-hHHHHHHHHHh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG-QANEQHEQIVK  204 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~-~~~~~~~eI~~  204 (207)
                      +|+.++. .+|+.+.+..++..|++.+|+++||+|+++.. ..++..+++++
T Consensus       111 iDa~~~~-~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~~~~~~~~~l~~  161 (225)
T cd01882         111 IDASFGF-EMETFEFLNILQVHGFPRVMGVLTHLDLFKKNKTLRKTKKRLKH  161 (225)
T ss_pred             EecCcCC-CHHHHHHHHHHHHcCCCeEEEEEeccccCCcHHHHHHHHHHHHH
Confidence            8899987 88999999999888999888999999998543 23344455544

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>cd01894 EngA1 EngA1 subfamily

Probab=95.81  E-value=0.038  Score=41.71  Aligned_cols=69  Identities=20%  Similarity=0.146  Sum_probs=44.8

Q ss_pred             CCcEEEEEEeecCcceeec------cccc---ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC
Q psy13818        123 VNEKIALSRRVEKHWSLIE------GTVT---TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK  191 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rlig------g~~~---~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~  191 (207)
                      .+.++.+. +.||+..+.-      +..+   -.-.+++.  +++.++. ..+..++...++..+ ..+|+++||+|+.+
T Consensus        43 ~~~~~~i~-DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ii~v~d~~~~~-~~~~~~~~~~~~~~~-~piiiv~nK~D~~~  119 (157)
T cd01894          43 GGREFILI-DTGGIEPDDEGISKEIREQAELAIEEADVILFVVDGREGL-TPADEEIAKYLRKSK-KPVILVVNKVDNIK  119 (157)
T ss_pred             CCeEEEEE-ECCCCCCchhHHHHHHHHHHHHHHHhCCEEEEEEeccccC-CccHHHHHHHHHhcC-CCEEEEEECcccCC
Confidence            34566666 8888877531      0000   11123333  7777765 677788888888777 56899999999987


Q ss_pred             hhh
Q psy13818        192 EGQ  194 (207)
Q Consensus       192 ~~~  194 (207)
                      .+.
T Consensus       120 ~~~  122 (157)
T cd01894         120 EED  122 (157)
T ss_pred             hHH
Confidence            654

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01513 Translation_factor_III Domain III of Elongation factor (EF) Tu (EF-TU) and EF-G

Probab=95.76  E-value=0.04  Score=40.51  Aligned_cols=48  Identities=21%  Similarity=0.358  Sum_probs=40.7

Q ss_pred             ccCccCceEEEEeeccccceEEEEEe------------------cceEEEEe--eCccccc------CCcEEEE
Q psy13818         82 QKLTRNEVLLVNIGSLSTGGRVLATK------------------ADLAKISL--TNPVCTE------VNEKIAL  129 (207)
Q Consensus        82 ~~l~~~E~lmlniGs~~t~g~V~~~~------------------~Dla~i~L--~~Pvc~~------~G~kiaI  129 (207)
                      .||+.|....+.+||+.+.|+|..+.                  .|.+.+.|  ..|+|.+      .+.|..|
T Consensus        17 ~pl~~g~~~~l~~~t~~~~~~i~~i~~~~d~~~~~~~~~~~l~~~~~a~v~l~~~~pi~~e~~~~~~~~grfil   90 (102)
T cd01513          17 EPLSPGYKPVLNVGTAHVPGRIAKLLSKVDGKTEEKKPPEFLKSGERGIVEVELQKPVALETFSENQEGGRFAL   90 (102)
T ss_pred             cccCCCCcEEEEeecCEEeEEEEeeeeecccCcccccCchhhcCCCEEEEEEEECCceEEEEhhhCCCcccEEE
Confidence            49999999999999999999999886                  56666655  6899988      8888776

Elongation factors (EF) EF-Tu and EF-G participate in the elongation phase during protein biosynthesis on the ribosome. Their functional cycles depend on GTP binding and its hydrolysis. The EF-Tu complexed with GTP and aminoacyl-tRNA delivers tRNA to the ribosome, whereas EF-G stimulates translocation, a process in which tRNA and mRNA movements occur in the ribosome. Experimental data showed that: (1) intrinsic GTPase activity of EF-G is influenced by excision of its domain III; (2) that EF-G lacking domain III has a 1,000-fold decreased GTPase activity on the ribosome and, a slightly decreased affinity for GTP; and (3) EF-G lacking domain III does not stimulate translocation, despite the physical presence of domain IV which is also very important for translocation. These findings indicate an essential contribution of domain III to activation of GTP hydrolysis. Domains III and V of EF-G have the s

>PRK00093 GTP-binding protein Der; Reviewed

Probab=95.67  E-value=0.026  Score=51.79  Aligned_cols=50  Identities=20%  Similarity=0.151  Sum_probs=38.4

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKF  205 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~  205 (207)
                      +|+.++. ..|+.+.+..+...|. .+||++||+|+++.+..++..+++.+.
T Consensus       263 iD~~~~~-~~~~~~i~~~~~~~~~-~~ivv~NK~Dl~~~~~~~~~~~~~~~~  312 (435)
T PRK00093        263 IDATEGI-TEQDLRIAGLALEAGR-ALVIVVNKWDLVDEKTMEEFKKELRRR  312 (435)
T ss_pred             EeCCCCC-CHHHHHHHHHHHHcCC-cEEEEEECccCCCHHHHHHHHHHHHHh
Confidence            8999996 8899888888777775 588999999999766555555555543

>PRK12736 elongation factor Tu; Reviewed

Probab=95.64  E-value=0.029  Score=51.89  Aligned_cols=97  Identities=22%  Similarity=0.291  Sum_probs=69.1

Q ss_pred             cccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceE
Q psy13818         11 RADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVL   90 (207)
Q Consensus        11 ~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~l   90 (207)
                      +.|--.|.|++.++.+|+ +.+++.+..+|+..-                        |         .+..+|+.|...
T Consensus       284 ~~~i~~G~vl~~~~~~~~-~~~f~a~i~vl~~~~------------------------~---------~~~~~i~~g~~~  329 (394)
T PRK12736        284 RDEVERGQVLAKPGSIKP-HTKFKAEVYILTKEE------------------------G---------GRHTPFFNNYRP  329 (394)
T ss_pred             HHhCCcceEEecCCCCCc-ceEEEEEEEEEeccc------------------------C---------CCCCcccCCceE
Confidence            345557999999997766 478888887764321                        1         124678899999


Q ss_pred             EEEeeccccceEEEEEe-------cce--EEEEeeCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818         91 LVNIGSLSTGGRVLATK-------ADL--AKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVT  145 (207)
Q Consensus        91 mlniGs~~t~g~V~~~~-------~Dl--a~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~  145 (207)
                      ++.+||+...|++....       .|.  +++.|..|+|.+.|+|..| |+ .|  +.+| |.|+
T Consensus       330 ~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfil-R~-~g--~tv~~G~V~  390 (394)
T PRK12736        330 QFYFRTTDVTGSIELPEGTEMVMPGDNVTITVELIHPIAMEQGLKFAI-RE-GG--RTVGAGTVT  390 (394)
T ss_pred             EEEEccCeEEEEEEecCCcceeCCCCEEEEEEEECceEEEeeCCEEEE-ec-CC--cEEEEEEEE
Confidence            99999999999986432       344  4555679999999998776 54 23  5666 6553

>PLN03126 Elongation factor Tu; Provisional

Probab=95.63  E-value=0.032  Score=53.59  Aligned_cols=96  Identities=21%  Similarity=0.267  Sum_probs=71.2

Q ss_pred             cccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceE
Q psy13818         11 RADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVL   90 (207)
Q Consensus        11 ~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~l   90 (207)
                      +.|--.|.|+..++..|+ ..+++.++.+|+.--                                 ..+..+|+.|...
T Consensus       363 ~~di~rG~VL~~~~~~~~-~~~F~A~i~vL~~~~---------------------------------gg~~~~I~~G~~~  408 (478)
T PLN03126        363 KADIQRGMVLAKPGSITP-HTKFEAIVYVLKKEE---------------------------------GGRHSPFFAGYRP  408 (478)
T ss_pred             HHHcCCccEEecCCCCCc-eEEEEEEEEEecccc---------------------------------cCCcccccCCcEE
Confidence            456667999999987554 678998888775321                                 1124689999999


Q ss_pred             EEEeeccccceEEEEEec------------c--eEEEEeeCcccccCCcEEEEEEeecCcceeec-ccc
Q psy13818         91 LVNIGSLSTGGRVLATKA------------D--LAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTV  144 (207)
Q Consensus        91 mlniGs~~t~g~V~~~~~------------D--la~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~  144 (207)
                      ++.+||..+.|+|..+..            |  .+++.|..|+|.+.+.|+.+ |+- +  +-+| |.|
T Consensus       409 ~lhigt~~~~~~I~~i~~~~~~~~~~l~~gd~a~v~l~~~~Pi~~~~~~Rfil-R~~-~--~Tva~G~V  473 (478)
T PLN03126        409 QFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIVPVACEQGMRFAI-REG-G--KTVGAGVI  473 (478)
T ss_pred             EEEEEecEEEEEEEEEecccCCCccEeCCCCEEEEEEEECCeEEEccCCEEEE-ecC-C--ceEEEEEE
Confidence            999999999999999863            2  35567789999999998776 443 2  4454 544

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=95.51  E-value=0.032  Score=50.95  Aligned_cols=49  Identities=22%  Similarity=0.211  Sum_probs=36.4

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCC-ChhhHHHHHHHHHh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLV-KEGQANEQHEQIVK  204 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV-~~~~~~~~~~eI~~  204 (207)
                      +|+.++. ..|+.+.+..+...|. .+|+|+||+|++ +.+..++..+++.+
T Consensus       262 ~D~~~~~-~~~~~~~~~~~~~~~~-~iiiv~NK~Dl~~~~~~~~~~~~~~~~  311 (429)
T TIGR03594       262 LDATEGI-TEQDLRIAGLILEAGK-ALVIVVNKWDLVKDEKTREEFKKELRR  311 (429)
T ss_pred             EECCCCc-cHHHHHHHHHHHHcCC-cEEEEEECcccCCCHHHHHHHHHHHHH
Confidence            8999986 8899888888777775 589999999999 44444444445543

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01895 EngA2 EngA2 subfamily

Probab=95.44  E-value=0.052  Score=41.28  Aligned_cols=49  Identities=24%  Similarity=0.232  Sum_probs=31.3

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh--hhHHHHHHHHHh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE--GQANEQHEQIVK  204 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~--~~~~~~~~eI~~  204 (207)
                      +|++.+. ..|..+.+..+...+ ..+++++||+|+.+.  ....+..+++++
T Consensus        92 ~d~~~~~-~~~~~~~~~~~~~~~-~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~  142 (174)
T cd01895          92 IDATEGI-TEQDLRIAGLILEEG-KALVIVVNKWDLVEKDSKTMKEFKKEIRR  142 (174)
T ss_pred             EeCCCCc-chhHHHHHHHHHhcC-CCEEEEEeccccCCccHHHHHHHHHHHHh
Confidence            6777765 555554444444456 578899999999876  444444455544

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd03708 GTPBP_III Domain III of the GP-1 family of GTPase

Probab=95.28  E-value=0.063  Score=38.94  Aligned_cols=59  Identities=20%  Similarity=0.331  Sum_probs=45.8

Q ss_pred             ccCccCceEEEEeeccccceEEEEEe------cceE--EEEe-eCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818         82 QKLTRNEVLLVNIGSLSTGGRVLATK------ADLA--KISL-TNPVCTEVNEKIALSRRVEKHWSLIE-GTVT  145 (207)
Q Consensus        82 ~~l~~~E~lmlniGs~~t~g~V~~~~------~Dla--~i~L-~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~  145 (207)
                      .+|+.|...++.++|+...++|..+.      .|.+  ++.| ..|+|.+.|.|..+  |. |  +.|| |.|+
T Consensus        17 ~~i~~Gy~~~l~~~t~~~~~~i~~i~~~~l~~g~~~~v~i~f~~~p~~~e~~grf~l--r~-g--~tva~G~I~   85 (87)
T cd03708          17 TTISPGYQATVHIGSIRQTARIVSIDKDVLRTGDRALVRFRFLYHPEYLREGQRLIF--RE-G--RTKGVGEVT   85 (87)
T ss_pred             CcccCCCEeEEEEcCCEEEEEEEeccHhhccCCCeEEEEEEECCCCcEEccCCeEEE--EC-C--CcEEEEEEE
Confidence            68999999999999999999998753      4544  4552 58999999999988  22 2  5777 7663

This group includes proteins similar to GTPBP1 and GTPBP2. GTPB1 is structurally, related to elongation factor 1 alpha, a key component of protein biosynthesis machinery. Immunohistochemical analyses on mouse tissues revealed that GTPBP1 is expressed in some neurons and smooth muscle cells of various organs as well as macrophages. Immunofluorescence analyses revealed that GTPBP1 is localized exclusively in cytoplasm and shows a diffuse granular network forming a gradient from the nucleus to the periphery of the cells in smooth muscle cell lines and macrophages. No significant difference was observed in the immune response to protein antigen between mutant mice and wild-type mice, suggesting normal function of antigen-presenting cells of the mutant mice. The absence of an eminent phenotype in GTPBP1-deficient mice may be due to functional compensation by GTPBP2, which is similar to GTPBP1 in structure and tissue distribution.

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=95.02  E-value=0.067  Score=44.71  Aligned_cols=70  Identities=19%  Similarity=0.074  Sum_probs=43.0

Q ss_pred             CCcEEEEEEeecCcceeec-cccc-ccccccee--eecCCC-CCCCchHHHHHH-HH---Hc-CCCeEEEEEecCCCCCh
Q psy13818        123 VNEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNES-CPQPQTSEHLAA-IE---IM-KLKHIIILQNKIDLVKE  192 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg-~~~pQT~EHl~i-l~---~l-GI~~iIV~vNK~DlV~~  192 (207)
                      .+.++.+. +.|||.+|-. +.-. ++.+.|+.  +|+... -...++.+++.- +.   .. .-.-++|+.||+|+...
T Consensus        46 ~~~~~~l~-D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a  124 (203)
T cd04105          46 KGKKFRLV-DVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTA  124 (203)
T ss_pred             CCceEEEE-ECCCCHHHHHHHHHHHhccCCEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhccc
Confidence            45567765 9999999865 2222 44446655  777665 123556666542 22   11 23458899999999764


Q ss_pred             h
Q psy13818        193 G  193 (207)
Q Consensus       193 ~  193 (207)
                      .
T Consensus       125 ~  125 (203)
T cd04105         125 K  125 (203)
T ss_pred             C
Confidence            3

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=94.97  E-value=0.081  Score=42.21  Aligned_cols=51  Identities=14%  Similarity=0.234  Sum_probs=35.3

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~l  206 (207)
                      +|+..+. .++..+....++.++++ ++++.||+|+.+.++.+...+++++++
T Consensus       114 ~d~~~~~-~~~~~~i~~~l~~~~~~-~iiv~nK~Dl~~~~~~~~~~~~i~~~l  164 (196)
T PRK00454        114 IDSRHPL-KELDLQMIEWLKEYGIP-VLIVLTKADKLKKGERKKQLKKVRKAL  164 (196)
T ss_pred             EecCCCC-CHHHHHHHHHHHHcCCc-EEEEEECcccCCHHHHHHHHHHHHHHH
Confidence            5666654 55555666677778876 788899999998766555555665543

>PLN03127 Elongation factor Tu; Provisional

Probab=94.86  E-value=0.064  Score=50.97  Aligned_cols=98  Identities=26%  Similarity=0.302  Sum_probs=70.3

Q ss_pred             ccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818         10 CRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV   89 (207)
Q Consensus        10 ~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~   89 (207)
                      .+.|--.|+|+..++. |+...+++.+.++|+.--|                       |          ...+|..|-.
T Consensus       336 ~~~~i~rG~Vl~~~~~-~~~~~~F~A~i~vl~~~~g-----------------------g----------~~~~i~~g~~  381 (447)
T PLN03127        336 KREDVQRGQVICKPGS-IKTYKKFEAEIYVLTKDEG-----------------------G----------RHTPFFSNYR  381 (447)
T ss_pred             CHHHCCCccEEecCCC-CceeEEEEEEEEEEccccc-----------------------c----------cCcccccCce
Confidence            3345557999999976 5668899999887753210                       1          2357888998


Q ss_pred             EEEEeeccccceEEEEEe-------cce--EEEEeeCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818         90 LLVNIGSLSTGGRVLATK-------ADL--AKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVT  145 (207)
Q Consensus        90 lmlniGs~~t~g~V~~~~-------~Dl--a~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~  145 (207)
                      .++.+||+...|++.-..       .|.  +++.|..|+|.+.|.|..+ |+- |  +.+| |.|+
T Consensus       382 ~~~~~~t~~~~~~i~~~~~~~~l~~gd~a~v~l~~~~p~~le~g~Rfil-R~~-g--~Tvg~G~V~  443 (447)
T PLN03127        382 PQFYLRTADVTGKVELPEGVKMVMPGDNVTAVFELISPVPLEPGQRFAL-REG-G--RTVGAGVVS  443 (447)
T ss_pred             eEEEeeecceeEEEEeccCccccCCCCEEEEEEEECceEEEeeCCEEEE-EeC-C--cEEEEEEEE
Confidence            999999999999986432       344  4556679999999998776 543 3  6776 7664

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=94.82  E-value=0.075  Score=52.05  Aligned_cols=61  Identities=18%  Similarity=0.254  Sum_probs=52.7

Q ss_pred             ccCccCceEEEEeeccccceEEEEEecceEEEEeeCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818         82 QKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVT  145 (207)
Q Consensus        82 ~~l~~~E~lmlniGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~  145 (207)
                      .+|+.+..+.+.+||..+.|+|.....+.+.+.|..|+|+..|+|..+ |+  +--+.|| |.|.
T Consensus       275 ~~l~~~~~~~~~~gt~~~~~~i~~l~~~~~~l~l~~P~~~~~gd~~i~-r~--~~~~tiggg~vl  336 (581)
T TIGR00475       275 VPLLELQPYHIAHGMSVTTGKISLLDKGIALLTLDAPLILAKGDKLVL-RD--SSGNFLAGARVL  336 (581)
T ss_pred             CccCCCCeEEEEEeceEEEEEEEEccCcEEEEEECCceecCCCCEEEE-Ee--CCCEEEeeeEEe
Confidence            589999999999999999999999999999999999999999997776 67  3345666 5555

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=94.70  E-value=0.08  Score=49.06  Aligned_cols=94  Identities=21%  Similarity=0.209  Sum_probs=69.2

Q ss_pred             ccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818         10 CRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV   89 (207)
Q Consensus        10 ~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~   89 (207)
                      .+.|--.|.|++.++..|++..+++.+..+|+                                    .  -.+|++|..
T Consensus       296 ~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~------------------------------------~--~~~i~~G~~  337 (425)
T PRK12317        296 GKKDIKRGDVCGHPDNPPTVAEEFTAQIVVLQ------------------------------------H--PSAITVGYT  337 (425)
T ss_pred             CHHHccCccEecCCCCCCCcccEEEEEEEEEC------------------------------------C--CCcCCCCCe
Confidence            44566789999999988888889988876541                                    1  257889999


Q ss_pred             EEEEeeccccceEEEEEe--------------------cceE--EEEeeCcccccCC------cEEEEEEeecCcceeec
Q psy13818         90 LLVNIGSLSTGGRVLATK--------------------ADLA--KISLTNPVCTEVN------EKIALSRRVEKHWSLIE  141 (207)
Q Consensus        90 lmlniGs~~t~g~V~~~~--------------------~Dla--~i~L~~Pvc~~~G------~kiaIsR~V~gh~rlig  141 (207)
                      .++.+||....|+|..+.                    .|.|  ++.|..|+|.+.+      .|+.| |+ .|  +-+|
T Consensus       338 ~~~~~~t~~~~~~i~~i~~~~d~~t~~~~~~~p~~l~~g~~a~v~l~~~~p~~~~~~~~~~~lgrfil-r~-~g--~tv~  413 (425)
T PRK12317        338 PVFHAHTAQVACTFEELVKKLDPRTGQVAEENPQFIKTGDAAIVKIKPTKPLVIEKVKEIPQLGRFAI-RD-MG--QTIA  413 (425)
T ss_pred             EEEEEcCcEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCeeEEEeCCcCCCCccEEE-EE-CC--CeEE
Confidence            999999999999998873                    3444  4556789999886      57666 45 33  4565


Q ss_pred             -cccc
Q psy13818        142 -GTVT  145 (207)
Q Consensus       142 -g~~~  145 (207)
                       |.|.
T Consensus       414 ~G~i~  418 (425)
T PRK12317        414 AGMVI  418 (425)
T ss_pred             EEEEE
Confidence             6654

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=94.48  E-value=0.14  Score=47.62  Aligned_cols=72  Identities=17%  Similarity=0.260  Sum_probs=56.0

Q ss_pred             cceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceEEEEe
Q psy13818         15 LVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNI   94 (207)
Q Consensus        15 lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lmlni   94 (207)
                      -.|.|+..++..|++..+++.+...|                                   .    ..+|+.|...++.+
T Consensus       291 ~rG~vl~~~~~~~~~~~~f~a~i~~l-----------------------------------~----~~~i~~g~~~~l~~  331 (406)
T TIGR02034       291 SRGDLLAAADSAPEVADQFAATLVWM-----------------------------------A----EEPLLPGRSYDLKL  331 (406)
T ss_pred             CCccEEEcCCCCCCcceEEEEEEEEe-----------------------------------C----hhhcCCCCEEEEEe
Confidence            34899999999888888888775432                                   1    14799999999999


Q ss_pred             eccccceEEEEEec------------------c--eEEEEeeCcccccCCc
Q psy13818         95 GSLSTGGRVLATKA------------------D--LAKISLTNPVCTEVNE  125 (207)
Q Consensus        95 Gs~~t~g~V~~~~~------------------D--la~i~L~~Pvc~~~G~  125 (207)
                      ||+.+.|+|..+..                  |  ++++.+..|+|.+.-+
T Consensus       332 gt~~~~~~i~~i~~~~d~~t~~~~~~~~l~~~~~~~v~l~~~~p~~~~~~~  382 (406)
T TIGR02034       332 GTRKVRASVAAIKHKVDVNTLEKGAAKSLELNEIGRVNLSLDEPIAFDPYA  382 (406)
T ss_pred             CCCEEEEEEEEEEEEecCCCCcccCCcccCCCCEEEEEEEECCeeccCccc
Confidence            99999999988853                  3  3455668899988555

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=94.19  E-value=0.15  Score=39.82  Aligned_cols=40  Identities=23%  Similarity=0.196  Sum_probs=25.8

Q ss_pred             eecCCCCCCCchHHHHHHHHHc-CCCeEEEEEecCCCCChhh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIM-KLKHIIILQNKIDLVKEGQ  194 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~l-GI~~iIV~vNK~DlV~~~~  194 (207)
                      +|+.++. ..|-.+-...+... .=+.+|+++||+|+++++.
T Consensus        19 iD~~~p~-~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~~~   59 (141)
T cd01857          19 VDARNPL-LFRPPDLERYVKEVDPRKKNILLLNKADLLTEEQ   59 (141)
T ss_pred             EEccCCc-ccCCHHHHHHHHhccCCCcEEEEEechhcCCHHH
Confidence            7777664 45544444444444 2357889999999987654

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=94.03  E-value=0.1  Score=48.16  Aligned_cols=96  Identities=18%  Similarity=0.249  Sum_probs=67.9

Q ss_pred             ccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceEE
Q psy13818         12 ADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLL   91 (207)
Q Consensus        12 ~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lm   91 (207)
                      .|--.|.|++.++.+|+ ..+++.+..+|+.--                        |         .+-.+|+.|...+
T Consensus       285 ~~i~rG~vl~~~~~~~~-~~~f~a~i~vl~~~~------------------------g---------~~~~~i~~g~~~~  330 (394)
T TIGR00485       285 EEIERGMVLAKPGSIKP-HTKFEAEVYVLKKEE------------------------G---------GRHTPFFSGYRPQ  330 (394)
T ss_pred             HHCCccEEEecCCCCCc-ceEEEEEEEEEecCC------------------------C---------CCCCccccCceEE
Confidence            44457999999987655 578887777653211                        1         1346889999999


Q ss_pred             EEeeccccceEEEEEe-------cce--EEEEeeCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818         92 VNIGSLSTGGRVLATK-------ADL--AKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVT  145 (207)
Q Consensus        92 lniGs~~t~g~V~~~~-------~Dl--a~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~  145 (207)
                      +.+||..+.|++....       .|.  +++.|..|+|.+.|+|..+ |+- |  +.+| |.|.
T Consensus       331 l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~~~~~~p~~~~~~~rfil-R~~-g--~tv~~G~V~  390 (394)
T TIGR00485       331 FYFRTTDVTGSITLPEGVEMVMPGDNVKMTVELISPIALEQGMRFAI-REG-G--RTVGAGVVS  390 (394)
T ss_pred             EEEecceEEEEEEecCCcceeCCCCEEEEEEEECceEEEeECCEEEE-ecC-C--cEEEEEEEE
Confidence            9999999999997543       344  4556669999999999887 542 3  4665 6554

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd01858 NGP_1 NGP-1

Probab=93.81  E-value=0.18  Score=39.98  Aligned_cols=43  Identities=21%  Similarity=0.198  Sum_probs=25.2

Q ss_pred             eecCCCCCCCchHHHHHHHHHcC-CCeEEEEEecCCCCChhhHHH
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMK-LKHIIILQNKIDLVKEGQANE  197 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lG-I~~iIV~vNK~DlV~~~~~~~  197 (207)
                      +|+.+.. .++..+-...++... -+..|+++||+|+++.++.+.
T Consensus        16 vD~~~p~-~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~~~~~~   59 (157)
T cd01858          16 LDARDPM-GTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTAR   59 (157)
T ss_pred             EECCCCc-cccCHHHHHHHHhccCCCCEEEEEEchhcCCHHHHHH
Confidence            6776653 344443333333322 146899999999987664433

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=93.73  E-value=0.21  Score=48.96  Aligned_cols=72  Identities=15%  Similarity=0.275  Sum_probs=56.9

Q ss_pred             ceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceEEEEee
Q psy13818         16 VGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIG   95 (207)
Q Consensus        16 vG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lmlniG   95 (207)
                      .|+|+..+++.|++..+++.+...|.                                       ..++..|...++.+|
T Consensus       316 rG~vL~~~~~~~~~~~~f~a~i~~l~---------------------------------------~~~~~~g~~~~l~~g  356 (632)
T PRK05506        316 RGDMLARADNRPEVADQFDATVVWMA---------------------------------------EEPLLPGRPYLLKHG  356 (632)
T ss_pred             CccEEecCCCCCcceeEEEEEEEEec---------------------------------------ccccCCCCeEEEEeC
Confidence            69999999999999999988876542                                       124667888999999


Q ss_pred             ccccceEEEEEe------------------cce--EEEEeeCcccccCCcE
Q psy13818         96 SLSTGGRVLATK------------------ADL--AKISLTNPVCTEVNEK  126 (207)
Q Consensus        96 s~~t~g~V~~~~------------------~Dl--a~i~L~~Pvc~~~G~k  126 (207)
                      |....|+|..+.                  .|.  +++.+..|+|.+..++
T Consensus       357 t~~~~a~i~~i~~~~d~~t~~~~~p~~l~~g~~~~v~l~~~~pi~~e~~~~  407 (632)
T PRK05506        357 TRTVPASVAAIKYRVDVNTLERLAAKTLELNEIGRCNLSTDAPIAFDPYAR  407 (632)
T ss_pred             CCEEEEEEEEEEEEecCCCCccCCcceeCCCCEEEEEEEECCEEeeeeccc
Confidence            999999998773                  233  4566789999998876

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=93.71  E-value=0.22  Score=37.37  Aligned_cols=65  Identities=17%  Similarity=0.126  Sum_probs=40.3

Q ss_pred             CcEEEEEEeecCcceeeccc-------cc--ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818        124 NEKIALSRRVEKHWSLIEGT-------VT--TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg~-------~~--~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      +.++.+. +.+|+.++....       ..  -....++.  +|+..    +.+.++..++....-..+|+++||+|+++.
T Consensus        48 ~~~~~i~-DtpG~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~----~~~~~~~~~~~~~~~~~vi~v~nK~D~~~~  122 (157)
T cd04164          48 GIPVRLI-DTAGIRETEDEIEKIGIERAREAIEEADLVLFVIDASR----GLDEEDLEILELPADKPIIVVLNKSDLLPD  122 (157)
T ss_pred             CEEEEEE-ECCCcCCCcchHHHHHHHHHHHHHhhCCEEEEEEECCC----CCCHHHHHHHHhhcCCCEEEEEEchhcCCc
Confidence            4466665 888876654210       00  01122322  55554    567777777777777889999999999865


Q ss_pred             h
Q psy13818        193 G  193 (207)
Q Consensus       193 ~  193 (207)
                      .
T Consensus       123 ~  123 (157)
T cd04164         123 S  123 (157)
T ss_pred             c
Confidence            4

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>PRK12289 GTPase RsgA; Reviewed

Probab=93.56  E-value=0.59  Score=43.41  Aligned_cols=41  Identities=32%  Similarity=0.296  Sum_probs=27.3

Q ss_pred             eecCCCCCCC-chHHHHHHHHHcCCCeEEEEEecCCCCChhhH
Q psy13818        154 RTGNESCPQP-QTSEHLAAIEIMKLKHIIILQNKIDLVKEGQA  195 (207)
Q Consensus       154 V~A~eg~~~p-QT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~  195 (207)
                      +|+.+.-+.+ +-.+.+..+...++ .+|+|+||+||+++++.
T Consensus        97 ~d~~~p~~~~~~LdR~L~~a~~~~i-p~ILVlNK~DLv~~~~~  138 (352)
T PRK12289         97 FALAEPPLDPWQLSRFLVKAESTGL-EIVLCLNKADLVSPTEQ  138 (352)
T ss_pred             EECCCCCCCHHHHHHHHHHHHHCCC-CEEEEEEchhcCChHHH
Confidence            5655442234 44566666666786 57899999999976543

>PRK01889 GTPase RsgA; Reviewed

Probab=93.36  E-value=1.7  Score=40.04  Aligned_cols=37  Identities=19%  Similarity=0.097  Sum_probs=25.5

Q ss_pred             eecCCCCCCCchHHHH-HHHHHcCCCeEEEEEecCCCCCh
Q psy13818        154 RTGNESCPQPQTSEHL-AAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl-~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      ++++.. +.+...|++ .++...|++- +||+||+||+++
T Consensus       120 ~s~~p~-~~~~~ldr~L~~a~~~~i~p-iIVLNK~DL~~~  157 (356)
T PRK01889        120 CSLNHD-FNLRRIERYLALAWESGAEP-VIVLTKADLCED  157 (356)
T ss_pred             EecCCC-CChhHHHHHHHHHHHcCCCE-EEEEEChhcCCC
Confidence            444434 377555555 4558899965 678999999875

>COG2229 Predicted GTPase [General function prediction only]

Probab=93.26  E-value=0.29  Score=42.54  Aligned_cols=67  Identities=12%  Similarity=0.051  Sum_probs=45.8

Q ss_pred             cccCC-cEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCC---eEEEEEecCCCCC
Q psy13818        120 CTEVN-EKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLK---HIIILQNKIDLVK  191 (207)
Q Consensus       120 c~~~G-~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~---~iIV~vNK~DlV~  191 (207)
                      |.-.+ ..+.+. ..|||.||== |.+. ++ .-|+.  ||++    .|||++-..|++++-.+   +++|+.||.||-+
T Consensus        62 ~~~~~~~~v~Lf-gtPGq~RF~fm~~~l~~g-a~gaivlVDss----~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~  135 (187)
T COG2229          62 IELDEDTGVHLF-GTPGQERFKFMWEILSRG-AVGAIVLVDSS----RPITFHAEEIIDFLTSRNPIPVVVAINKQDLFD  135 (187)
T ss_pred             eEEcCcceEEEe-cCCCcHHHHHHHHHHhCC-cceEEEEEecC----CCcchHHHHHHHHHhhccCCCEEEEeeccccCC
Confidence            44444 467776 9999999865 7766 55 45665  6654    36776444555555544   4999999999987


Q ss_pred             h
Q psy13818        192 E  192 (207)
Q Consensus       192 ~  192 (207)
                      .
T Consensus       136 a  136 (187)
T COG2229         136 A  136 (187)
T ss_pred             C
Confidence            4

>PRK04213 GTP-binding protein; Provisional

Probab=93.14  E-value=0.22  Score=40.36  Aligned_cols=31  Identities=23%  Similarity=0.313  Sum_probs=24.1

Q ss_pred             CCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        162 QPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       162 ~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      .+++.+.+..+...+++ ++|++||+|+.+.+
T Consensus       116 ~~~~~~l~~~~~~~~~p-~iiv~NK~Dl~~~~  146 (201)
T PRK04213        116 IPIDVEMFDFLRELGIP-PIVAVNKMDKIKNR  146 (201)
T ss_pred             cHHHHHHHHHHHHcCCC-eEEEEECccccCcH
Confidence            45677878887777876 58899999997654

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=93.03  E-value=0.28  Score=45.60  Aligned_cols=93  Identities=20%  Similarity=0.243  Sum_probs=65.3

Q ss_pred             cccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceE
Q psy13818         11 RADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVL   90 (207)
Q Consensus        11 ~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~l   90 (207)
                      +.|--.|+|++.++.-|+..++++.+..+|.                                      .-.+|+.|-.-
T Consensus       299 ~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~--------------------------------------~~~~i~~g~~~  340 (426)
T TIGR00483       299 KKDIRRGDVCGHPDNPPKVAKEFTAQIVVLQ--------------------------------------HPGAITVGYTP  340 (426)
T ss_pred             hhhcccceEEecCCCCCceeeEEEEEEEEEC--------------------------------------CCCccCCCCeE
Confidence            3455579999999886777778877765541                                      02478888777


Q ss_pred             EEEeeccccceEEEEEe--------------------cceE--EEEeeCcccccC------CcEEEEEEeecCcceeec-
Q psy13818         91 LVNIGSLSTGGRVLATK--------------------ADLA--KISLTNPVCTEV------NEKIALSRRVEKHWSLIE-  141 (207)
Q Consensus        91 mlniGs~~t~g~V~~~~--------------------~Dla--~i~L~~Pvc~~~------G~kiaIsR~V~gh~rlig-  141 (207)
                      ++.+||....|+|..+.                    .|.+  ++.|..|+|.+.      +.|..| |+- |  +.|| 
T Consensus       341 ~~~~~t~~~~~~i~~i~~~~~~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~~~~~~grf~l-r~~-g--~tv~~  416 (426)
T TIGR00483       341 VFHCHTAQIACRFDELLKKNDPRTGQVLEENPQFLKTGDAAIVKFKPTKPMVIEAVKEIPPLGRFAI-RDM-G--QTVAA  416 (426)
T ss_pred             EEEecCcEEEEEEEEEEEEecCccccccCCCCceeCCCCEEEEEEEECCeeEEeecccCCCCccEEE-EEC-C--CEEEE
Confidence            78999999999998763                    3444  445678999886      667776 453 3  4565 


Q ss_pred             cccc
Q psy13818        142 GTVT  145 (207)
Q Consensus       142 g~~~  145 (207)
                      |.|.
T Consensus       417 G~v~  420 (426)
T TIGR00483       417 GMII  420 (426)
T ss_pred             EEEE
Confidence            6654

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>KOG1144|consensus

Probab=92.98  E-value=0.1  Score=53.85  Aligned_cols=57  Identities=25%  Similarity=0.180  Sum_probs=42.2

Q ss_pred             EEEeecCcceeeccccccccccce----e--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCC
Q psy13818        129 LSRRVEKHWSLIEGTVTTKVLSTR----K--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLV  190 (207)
Q Consensus       129 IsR~V~gh~rligg~~~~nMiaGa----~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV  190 (207)
                      +..+-|||+.|..   -|+--+..    .  ||--.|. .|||.|-+.+|+.=..+ +||++||+|..
T Consensus       543 lvIdtpghEsFtn---lRsrgsslC~~aIlvvdImhGl-epqtiESi~lLR~rktp-FivALNKiDRL  605 (1064)
T KOG1144|consen  543 LVIDTPGHESFTN---LRSRGSSLCDLAILVVDIMHGL-EPQTIESINLLRMRKTP-FIVALNKIDRL  605 (1064)
T ss_pred             EEecCCCchhhhh---hhhccccccceEEEEeehhccC-CcchhHHHHHHHhcCCC-eEEeehhhhhh
Confidence            3448999999972   01221111    1  6777786 99999999999988876 99999999964

>PRK00049 elongation factor Tu; Reviewed

Probab=92.95  E-value=0.23  Score=46.11  Aligned_cols=98  Identities=20%  Similarity=0.253  Sum_probs=68.6

Q ss_pred             ccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818         10 CRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV   89 (207)
Q Consensus        10 ~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~   89 (207)
                      .+.|--.|.|++.++.+|+ ..+++.+..+|+-.-                        |         .+..+|+.|..
T Consensus       285 ~~~~i~~G~vl~~~~~~~~-~~~f~a~i~vl~~~~------------------------~---------g~~~~i~~g~~  330 (396)
T PRK00049        285 KREDVERGQVLAKPGSITP-HTKFEAEVYVLSKEE------------------------G---------GRHTPFFNGYR  330 (396)
T ss_pred             CHHHCCcceEEecCCCCCc-ceEEEEEEEEEecCc------------------------C---------CCCCcccCCCE
Confidence            3456668999999987665 588888877663211                        1         12468899999


Q ss_pred             EEEEeeccccceEEEE------Ee-cceE--EEEeeCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818         90 LLVNIGSLSTGGRVLA------TK-ADLA--KISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVT  145 (207)
Q Consensus        90 lmlniGs~~t~g~V~~------~~-~Dla--~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~  145 (207)
                      .++.+||+.+.++|.=      ++ .|.+  ++.+..|+|.+.|.|..| |+ .|  +.+| |.|.
T Consensus       331 ~~~~~~t~~~~~~i~l~~~~~~l~~g~~a~v~i~~~~p~~~e~~~Rfil-R~-~g--~t~~~G~V~  392 (396)
T PRK00049        331 PQFYFRTTDVTGVIELPEGVEMVMPGDNVEMTVELIAPIAMEEGLRFAI-RE-GG--RTVGAGVVT  392 (396)
T ss_pred             EEEEEecCcEEEEEEecCCCcccCCCCEEEEEEEECceEEEeeCCEEEE-ec-CC--cEEEEEEEE
Confidence            9999999999999831      11 3444  445569999999998776 54 34  4665 6554

>COG1162 Predicted GTPases [General function prediction only]

Probab=92.85  E-value=1.1  Score=41.47  Aligned_cols=87  Identities=16%  Similarity=0.122  Sum_probs=55.0

Q ss_pred             eccCccCceEEEEeeccccceEEEEEecceEEEEeeCcccccCCcEEEEEEeecCcceeeccccccccccceeeecCCCC
Q psy13818         81 VQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRKRTGNESC  160 (207)
Q Consensus        81 v~~l~~~E~lmlniGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~V~A~eg~  160 (207)
                      ...+-.||.+.+.-+..+  |.|.++-..  +-.|.+|..++.-. ..|+                       +++.++-
T Consensus        42 ~~~~vVGD~V~~~~~~~~--g~I~~i~~R--kn~L~Rp~v~n~d~-~iiI-----------------------vs~~~P~   93 (301)
T COG1162          42 DLKPVVGDRVVFEDENNN--GVIEKILPR--KNVLIRPPVANNDQ-AIIV-----------------------VSLVDPD   93 (301)
T ss_pred             CccccccCeEEEecCCCc--ceEEEEecc--cCceeCCcccccce-EEEE-----------------------EeccCCC
Confidence            455566887777776655  777777644  34566665444222 1111                       5555543


Q ss_pred             CC-CchHHHHHHHHHcCCCeEEEEEecCCCCChhhHH
Q psy13818        161 PQ-PQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQAN  196 (207)
Q Consensus       161 ~~-pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~  196 (207)
                      +. -+--+-|.++...||+-+ |++||+||++++..+
T Consensus        94 ~~~~~ldR~Lv~ae~~gi~pv-IvlnK~DL~~~~~~~  129 (301)
T COG1162          94 FNTNLLDRYLVLAEAGGIEPV-IVLNKIDLLDDEEAA  129 (301)
T ss_pred             CCHHHHHHHHHHHHHcCCcEE-EEEEccccCcchHHH
Confidence            33 355567778888999755 559999999987655

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=92.81  E-value=0.38  Score=36.08  Aligned_cols=49  Identities=16%  Similarity=0.192  Sum_probs=33.7

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVK  204 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~  204 (207)
                      +++.... +++..+....+...+. .+++++||+|+.+.++......++..
T Consensus        89 ~d~~~~~-~~~~~~~~~~l~~~~~-~vi~v~nK~D~~~~~~~~~~~~~~~~  137 (170)
T cd01876          89 IDSRHGP-TEIDLEMLDWLEELGI-PFLVVLTKADKLKKSELAKALKEIKK  137 (170)
T ss_pred             EEcCcCC-CHhHHHHHHHHHHcCC-CEEEEEEchhcCChHHHHHHHHHHHH
Confidence            5566664 6777777777777774 48889999999877655444444443

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>KOG0465|consensus

Probab=92.78  E-value=0.32  Score=49.20  Aligned_cols=81  Identities=17%  Similarity=0.136  Sum_probs=61.2

Q ss_pred             ccccCCcEEEEEEeecCcceeecccccc--cccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhh
Q psy13818        119 VCTEVNEKIALSRRVEKHWSLIEGTVTT--KVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQ  194 (207)
Q Consensus       119 vc~~~G~kiaIsR~V~gh~rligg~~~~--nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~  194 (207)
                      -|.|...++-|+ +.|||-+|.= .+-|  -.++||-  ++|-.|+ ++||.---.-++--|++++ .++||||....+.
T Consensus        98 ~~~w~~~~iNiI-DTPGHvDFT~-EVeRALrVlDGaVlvl~aV~GV-qsQt~tV~rQ~~ry~vP~i-~FiNKmDRmGa~~  173 (721)
T KOG0465|consen   98 YFTWRDYRINII-DTPGHVDFTF-EVERALRVLDGAVLVLDAVAGV-ESQTETVWRQMKRYNVPRI-CFINKMDRMGASP  173 (721)
T ss_pred             eeeeccceeEEe-cCCCceeEEE-EehhhhhhccCeEEEEEcccce-ehhhHHHHHHHHhcCCCeE-EEEehhhhcCCCh
Confidence            367788899998 9999999971 1113  4678887  8888998 9999998888888899865 6799999987653


Q ss_pred             HHHHHHHHHh
Q psy13818        195 ANEQHEQIVK  204 (207)
Q Consensus       195 ~~~~~~eI~~  204 (207)
                      . ...++|+.
T Consensus       174 ~-~~l~~i~~  182 (721)
T KOG0465|consen  174 F-RTLNQIRT  182 (721)
T ss_pred             H-HHHHHHHh
Confidence            2 23445544

>PRK12735 elongation factor Tu; Reviewed

Probab=92.63  E-value=0.21  Score=46.31  Aligned_cols=97  Identities=20%  Similarity=0.263  Sum_probs=67.6

Q ss_pred             cccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceE
Q psy13818         11 RADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVL   90 (207)
Q Consensus        11 ~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~l   90 (207)
                      +.|--.|.|+..++.+|+ ..+++.+..+|...-                        |         .+..+|+.|...
T Consensus       286 ~~~i~rG~vl~~~~~~~~-~~~f~a~i~vl~~~~------------------------~---------~~~~~i~~g~~~  331 (396)
T PRK12735        286 REDVERGQVLAKPGSIKP-HTKFEAEVYVLSKEE------------------------G---------GRHTPFFNGYRP  331 (396)
T ss_pred             HHHCCcceEEEcCCCCCc-ceEEEEEEEEEeccc------------------------C---------CCCCcccCCCee
Confidence            345557999999987655 588888877764211                        1         124688899999


Q ss_pred             EEEeeccccceEEEEEe-------cceE--EEEeeCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818         91 LVNIGSLSTGGRVLATK-------ADLA--KISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVT  145 (207)
Q Consensus        91 mlniGs~~t~g~V~~~~-------~Dla--~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~  145 (207)
                      ++.+||..+.|++....       .|.+  ++.|..|+|.+.|+|..+ |+- |  +.+| |.|.
T Consensus       332 ~l~~~t~~~~~~i~~~~~~~~l~~g~~a~v~l~~~~p~~~~~~~rfil-R~~-g--~tv~~G~V~  392 (396)
T PRK12735        332 QFYFRTTDVTGTIELPEGVEMVMPGDNVKMTVELIAPIAMEEGLRFAI-REG-G--RTVGAGVVA  392 (396)
T ss_pred             EEEeccceEEEEEEccCCCceeCCCCEEEEEEEECceEEEeECCEEEE-EcC-C--cEEEEEEEE
Confidence            99999999999986432       4444  555669999999998776 442 3  4555 5553

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=92.54  E-value=0.35  Score=38.30  Aligned_cols=23  Identities=35%  Similarity=0.421  Sum_probs=16.7

Q ss_pred             HHHcCCCeEEEEEecCCCCChhhH
Q psy13818        172 IEIMKLKHIIILQNKIDLVKEGQA  195 (207)
Q Consensus       172 l~~lGI~~iIV~vNK~DlV~~~~~  195 (207)
                      +...+ +.+|+++||+|+++.++.
T Consensus        25 ~~~~~-~p~IiVlNK~Dl~~~~~~   47 (155)
T cd01849          25 IKEKG-KKLILVLNKADLVPKEVL   47 (155)
T ss_pred             HhcCC-CCEEEEEechhcCCHHHH
Confidence            34445 469999999999876543

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0467|consensus

Probab=92.52  E-value=0.34  Score=50.01  Aligned_cols=63  Identities=22%  Similarity=0.121  Sum_probs=45.3

Q ss_pred             CCcEEEEEEeecCcceeeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCC
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKID  188 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~D  188 (207)
                      .+-.+-++ +.|||-+|-+=.-. .-.-+||.  ||+.||+ -+||.--+.=+-.=|+ ..|+|+||||
T Consensus        70 ~~~~~nli-dspghvdf~sevssas~l~d~alvlvdvvegv-~~qt~~vlrq~~~~~~-~~~lvinkid  135 (887)
T KOG0467|consen   70 KDYLINLI-DSPGHVDFSSEVSSASRLSDGALVLVDVVEGV-CSQTYAVLRQAWIEGL-KPILVINKID  135 (887)
T ss_pred             CceEEEEe-cCCCccchhhhhhhhhhhcCCcEEEEeecccc-chhHHHHHHHHHHccC-ceEEEEehhh
Confidence            34477887 99999999832211 22334555  9999998 8999877665555565 4889999999

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=92.50  E-value=0.39  Score=36.39  Aligned_cols=65  Identities=14%  Similarity=0.137  Sum_probs=34.9

Q ss_pred             CcEEEEEEeecCcceeecc----cccccccc--cee-----eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818        124 NEKIALSRRVEKHWSLIEG----TVTTKVLS--TRK-----RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg----~~~~nMia--Ga~-----V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      |..+.+. +.||+.++.+.    .+.++++.  ++.     +|+...   .+......-+...++ .+|+++||+|+.+.
T Consensus        42 ~~~~~li-DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~~~~~~~~~~~-~~iiv~NK~Dl~~~  116 (158)
T cd01879          42 GKEIEIV-DLPGTYSLSPYSEDEKVARDFLLGEKPDLIVNVVDATNL---ERNLYLTLQLLELGL-PVVVALNMIDEAEK  116 (158)
T ss_pred             CeEEEEE-ECCCccccCCCChhHHHHHHHhcCCCCcEEEEEeeCCcc---hhHHHHHHHHHHcCC-CEEEEEehhhhccc
Confidence            3456665 88887766542    11233332  222     566542   222222222344565 58899999999875


Q ss_pred             h
Q psy13818        193 G  193 (207)
Q Consensus       193 ~  193 (207)
                      +
T Consensus       117 ~  117 (158)
T cd01879         117 R  117 (158)
T ss_pred             c
Confidence            4

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=92.46  E-value=0.29  Score=40.60  Aligned_cols=25  Identities=28%  Similarity=0.484  Sum_probs=18.4

Q ss_pred             CeEEEEEecCCCCChhhHHHHHHHH
Q psy13818        178 KHIIILQNKIDLVKEGQANEQHEQI  202 (207)
Q Consensus       178 ~~iIV~vNK~DlV~~~~~~~~~~eI  202 (207)
                      +..|+++||+|+++.+...+..++.
T Consensus        31 kp~IlVlNK~DL~~~~~l~~~~~~~   55 (172)
T cd04178          31 KKLVLVLNKIDLVPKENVEKWLKYL   55 (172)
T ss_pred             CCEEEEEehhhcCCHHHHHHHHHHH
Confidence            6789999999999877554443333

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01854 YjeQ_engC YjeQ/EngC

Probab=92.37  E-value=1.1  Score=39.90  Aligned_cols=88  Identities=23%  Similarity=0.244  Sum_probs=48.6

Q ss_pred             cCccCceEEEEeeccccceEEEEEecceEEEEeeCcccccCCcEEEEEEeecCcc-eeecccccccccccee--eecCCC
Q psy13818         83 KLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHW-SLIEGTVTTKVLSTRK--RTGNES  159 (207)
Q Consensus        83 ~l~~~E~lmlniGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~-rligg~~~~nMiaGa~--V~A~eg  159 (207)
                      .+..||.+++..-. ..-|.|.++-          |      .|-.++|.-+++. +.|    .+|. +.+.  +|+++.
T Consensus        34 ~~~vGD~V~~~~~~-~~~~~i~~i~----------~------R~~~l~R~~~~~~~~~i----~anv-D~vllV~d~~~p   91 (287)
T cd01854          34 KPVVGDWVEVEPDD-DGEGVIVRVL----------P------RKNLLSRPAAGGREQVI----AANV-DQLVIVVSLNEP   91 (287)
T ss_pred             CccCCCEEEEEecC-CCcEEEEEEE----------C------CCceEEccCCCCcceeE----EEeC-CEEEEEEEcCCC
Confidence            47778888885322 1223443332          2      2445555544333 111    1443 4444  666665


Q ss_pred             CCCCch-HHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        160 CPQPQT-SEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       160 ~~~pQT-~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      .+.++. .+++..+...+++ +|+|+||+||.++.
T Consensus        92 ~~s~~~ldr~L~~~~~~~ip-~iIVlNK~DL~~~~  125 (287)
T cd01854          92 FFNPRLLDRYLVAAEAAGIE-PVIVLTKADLLDDE  125 (287)
T ss_pred             CCCHHHHHHHHHHHHHcCCC-EEEEEEHHHCCChH
Confidence            323333 4466667777865 88889999998764

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=92.06  E-value=0.37  Score=45.56  Aligned_cols=48  Identities=21%  Similarity=0.178  Sum_probs=31.0

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHH
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIV  203 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~  203 (207)
                      +|+.++. ..|..+.+..+.-.|. .+|||+||+|+++.+......+++.
T Consensus       301 ~Da~~~~-s~~~~~~~~~~~~~~~-piIiV~NK~Dl~~~~~~~~~~~~i~  348 (472)
T PRK03003        301 IDASEPI-SEQDQRVLSMVIEAGR-ALVLAFNKWDLVDEDRRYYLEREID  348 (472)
T ss_pred             EeCCCCC-CHHHHHHHHHHHHcCC-CEEEEEECcccCChhHHHHHHHHHH
Confidence            8888885 6666655544444554 5899999999987543333334443

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=91.40  E-value=0.81  Score=43.79  Aligned_cols=72  Identities=15%  Similarity=0.203  Sum_probs=55.7

Q ss_pred             ceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceEEEEee
Q psy13818         16 VGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIG   95 (207)
Q Consensus        16 vG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lmlniG   95 (207)
                      .|.|+..++..|+...+++.+...|.                                       ..+|+.|-..++.+|
T Consensus       320 rG~VL~~~~~~~~~~~~f~a~i~~l~---------------------------------------~~~i~~G~~~~l~~g  360 (474)
T PRK05124        320 RGDLLVAADEALQAVQHASADVVWMA---------------------------------------EQPLQPGQSYDIKIA  360 (474)
T ss_pred             CccEEECCCCCCccceEEEEEEEEeC---------------------------------------CcccCCCCeEEEEeC
Confidence            58899999988888888887765431                                       146888888889999


Q ss_pred             ccccceEEEEEe------------------cce--EEEEeeCcccccCCcE
Q psy13818         96 SLSTGGRVLATK------------------ADL--AKISLTNPVCTEVNEK  126 (207)
Q Consensus        96 s~~t~g~V~~~~------------------~Dl--a~i~L~~Pvc~~~G~k  126 (207)
                      |..+.|+|..+.                  .|.  +++.+..|+|.+..++
T Consensus       361 t~~~~a~i~~i~~~id~~t~~~~~~~~l~~g~~a~v~l~~~~pv~~e~~~~  411 (474)
T PRK05124        361 GKKTRARVDAIRYQVDINTLTQREAENLPLNGIGLVELTFDEPLVLDPYQQ  411 (474)
T ss_pred             CCEEEEEEEEEeeeeccCCCcccCccccCCCCEEEEEEEECCeeccccCCc
Confidence            999999998885                  233  4556688999887765

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=91.30  E-value=0.33  Score=35.47  Aligned_cols=64  Identities=25%  Similarity=0.196  Sum_probs=32.4

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee-e-------ecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK-R-------TGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~-V-------~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      ++.+. +.+|+.++-. |... +++...+. +       ++.++. ..+..+....+.. ++ -++|++||+|+.+.+
T Consensus        51 ~~~~~-D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~~v~~~~~~~-~~~~~~~~~~~~~-~~-p~ivv~nK~D~~~~~  124 (161)
T TIGR00231        51 KFNLL-DTAGQEDYRAIRRLYYRAVESSLRVFDIVILVLDVEEIL-EKQTKEIIHHAES-NV-PIILVGNKIDLRDAK  124 (161)
T ss_pred             EEEEE-ECCCcccchHHHHHHHhhhhEEEEEEEEeeeehhhhhHh-HHHHHHHHHhccc-CC-cEEEEEEcccCCcch
Confidence            34444 7888776632 2111 44444333 1       222221 2333333333332 43 489999999998754

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>cd01859 MJ1464 MJ1464

Probab=91.26  E-value=0.4  Score=37.64  Aligned_cols=38  Identities=18%  Similarity=0.218  Sum_probs=25.2

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      +|+.++. ..|..+-...+...+ +.+|+++||+|+++.+
T Consensus        20 ~D~~~~~-~~~~~~l~~~~~~~~-~p~iiv~NK~Dl~~~~   57 (156)
T cd01859          20 LDARDPE-LTRSRKLERYVLELG-KKLLIVLNKADLVPKE   57 (156)
T ss_pred             eeCCCCc-ccCCHHHHHHHHhCC-CcEEEEEEhHHhCCHH
Confidence            7776654 555544444444556 4688999999998654

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG0464|consensus

Probab=91.09  E-value=0.12  Score=50.79  Aligned_cols=69  Identities=17%  Similarity=0.138  Sum_probs=53.0

Q ss_pred             ccCCcEEEEEEeecCcceeeccccc--ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        121 TEVNEKIALSRRVEKHWSLIEGTVT--TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       121 ~~~G~kiaIsR~V~gh~rligg~~~--~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      -|.|.|+-++ +.|||.+|-= .+-  --.++|+-  +||..|+ +|||-.--.-+.-+.++. +.++||||....+
T Consensus        98 dwkg~rinli-dtpghvdf~l-everclrvldgavav~dasagv-e~qtltvwrqadk~~ip~-~~finkmdk~~an  170 (753)
T KOG0464|consen   98 DWKGHRINLI-DTPGHVDFRL-EVERCLRVLDGAVAVFDASAGV-EAQTLTVWRQADKFKIPA-HCFINKMDKLAAN  170 (753)
T ss_pred             ccccceEeee-cCCCcceEEE-EHHHHHHHhcCeEEEEeccCCc-ccceeeeehhccccCCch-hhhhhhhhhhhhh
Confidence            4789999998 9999999861 111  24678877  8999998 999987766677778875 4679999976543

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=91.05  E-value=0.26  Score=43.31  Aligned_cols=36  Identities=28%  Similarity=0.228  Sum_probs=26.5

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      +||.    .|.+.++..+.+.+.-+.+|+|+||+|+++.+
T Consensus        29 ~Dar----~p~~~~~~~i~~~l~~kp~IiVlNK~DL~~~~   64 (276)
T TIGR03596        29 LDAR----IPLSSRNPMIDEIRGNKPRLIVLNKADLADPA   64 (276)
T ss_pred             EeCC----CCCCCCChhHHHHHCCCCEEEEEEccccCCHH
Confidence            5664    35556666677777667899999999998764

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=90.78  E-value=0.4  Score=43.85  Aligned_cols=38  Identities=29%  Similarity=0.326  Sum_probs=32.0

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      +|+.++. .++..+....++..+.+ +|+|+||+|+.+.+
T Consensus        86 vD~~~~~-~~~d~~i~~~l~~~~~p-iilVvNK~D~~~~~  123 (429)
T TIGR03594        86 VDGREGL-TPEDEEIAKWLRKSGKP-VILVANKIDGKKED  123 (429)
T ss_pred             EeCCCCC-CHHHHHHHHHHHHhCCC-EEEEEECccCCccc
Confidence            8899886 88888888888888764 88999999997654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=90.61  E-value=0.55  Score=46.92  Aligned_cols=48  Identities=13%  Similarity=0.065  Sum_probs=34.0

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHH
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIV  203 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~  203 (207)
                      +|+.++. +.|..+.+..+.-.|. -+|||+||+|+++.+..+...+++.
T Consensus       540 iDat~~~-s~~~~~i~~~~~~~~~-piIiV~NK~DL~~~~~~~~~~~~~~  587 (712)
T PRK09518        540 FDASQPI-SEQDLKVMSMAVDAGR-ALVLVFNKWDLMDEFRRQRLERLWK  587 (712)
T ss_pred             EECCCCC-CHHHHHHHHHHHHcCC-CEEEEEEchhcCChhHHHHHHHHHH
Confidence            8999986 8888776665555565 5889999999987654333333443

>PRK00089 era GTPase Era; Reviewed

Probab=90.15  E-value=0.91  Score=39.53  Aligned_cols=48  Identities=25%  Similarity=0.318  Sum_probs=30.0

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCC-ChhhHHHHHHHHH
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLV-KEGQANEQHEQIV  203 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV-~~~~~~~~~~eI~  203 (207)
                      +|++++. .....+++..+...+. .+++|+||+|++ +.++..+..+++.
T Consensus        92 vd~~~~~-~~~~~~i~~~l~~~~~-pvilVlNKiDl~~~~~~l~~~~~~l~  140 (292)
T PRK00089         92 VDADEKI-GPGDEFILEKLKKVKT-PVILVLNKIDLVKDKEELLPLLEELS  140 (292)
T ss_pred             EeCCCCC-ChhHHHHHHHHhhcCC-CEEEEEECCcCCCCHHHHHHHHHHHH
Confidence            7777753 4455555555554444 578899999999 4454444444443

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=89.74  E-value=0.57  Score=36.15  Aligned_cols=66  Identities=15%  Similarity=0.146  Sum_probs=33.7

Q ss_pred             CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHH-HH---HcCCCeEEEEEecCCCCCh
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAA-IE---IMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~i-l~---~lGI~~iIV~vNK~DlV~~  192 (207)
                      +.++.+. +.+||.++-. +.-. ++. .++.  +|+.+.....+..+.+.- ++   .-+++ +++++||+|+.+.
T Consensus        49 ~~~~~l~-Dt~G~~~~~~~~~~~~~~~-~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~D~~~~  122 (167)
T cd04160          49 NARLKFW-DLGGQESLRSLWDKYYAEC-HAIIYVIDSTDRERFEESKSALEKVLRNEALEGVP-LLILANKQDLPDA  122 (167)
T ss_pred             CEEEEEE-ECCCChhhHHHHHHHhCCC-CEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCC-EEEEEEccccccC
Confidence            3455554 7788776653 1111 221 2322  777654322333333221 11   23554 8899999998664

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd01878 HflX HflX subfamily

Probab=89.66  E-value=0.63  Score=37.81  Aligned_cols=41  Identities=17%  Similarity=0.231  Sum_probs=29.6

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCC--CeEEEEEecCCCCChhh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKL--KHIIILQNKIDLVKEGQ  194 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI--~~iIV~vNK~DlV~~~~  194 (207)
                      +|+++.....+..++..+++.++.  ..+|+|+||+|+.+...
T Consensus       128 ~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~~  170 (204)
T cd01878         128 VDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDEE  170 (204)
T ss_pred             EECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChHH
Confidence            788766534556666677777764  46899999999987553

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>PRK12288 GTPase RsgA; Reviewed

Probab=89.62  E-value=6.8  Score=36.28  Aligned_cols=25  Identities=36%  Similarity=0.537  Sum_probs=18.5

Q ss_pred             HHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        168 HLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       168 Hl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      -+.++...+++ .|+|+||+||++++
T Consensus       142 ~L~~a~~~~i~-~VIVlNK~DL~~~~  166 (347)
T PRK12288        142 YLVACETLGIE-PLIVLNKIDLLDDE  166 (347)
T ss_pred             HHHHHHhcCCC-EEEEEECccCCCcH
Confidence            35556777875 56789999998754

>cd00880 Era_like Era (E

Probab=89.43  E-value=1  Score=32.74  Aligned_cols=42  Identities=19%  Similarity=0.286  Sum_probs=26.4

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHH
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANE  197 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~  197 (207)
                      +++.... ..++..........++ .+++++||+|++..+....
T Consensus        83 ~~~~~~~-~~~~~~~~~~~~~~~~-~~ivv~nK~D~~~~~~~~~  124 (163)
T cd00880          83 VDADLRA-DEEEEKLLELLRERGK-PVLLVLNKIDLLPEEEEEE  124 (163)
T ss_pred             EeCCCCC-CHHHHHHHHHHHhcCC-eEEEEEEccccCChhhHHH
Confidence            6676664 3333333444444444 5889999999998764443

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>cd04163 Era Era subfamily

Probab=88.43  E-value=1.8  Score=32.21  Aligned_cols=47  Identities=23%  Similarity=0.234  Sum_probs=27.4

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCC-ChhhHHHHHHHH
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLV-KEGQANEQHEQI  202 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV-~~~~~~~~~~eI  202 (207)
                      +++.+.. .-+..+....+...+. .+++++||+|+. +.+...+..+++
T Consensus        90 ~d~~~~~-~~~~~~~~~~~~~~~~-~~iiv~nK~Dl~~~~~~~~~~~~~~  137 (168)
T cd04163          90 VDASEPI-GEGDEFILELLKKSKT-PVILVLNKIDLVKDKEDLLPLLEKL  137 (168)
T ss_pred             EECCCcc-CchHHHHHHHHHHhCC-CEEEEEEchhccccHHHHHHHHHHH
Confidence            7777653 3344444444554444 478999999998 344444433333

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01856 YlqF YlqF

Probab=88.09  E-value=1.1  Score=36.08  Aligned_cols=36  Identities=25%  Similarity=0.236  Sum_probs=23.1

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      +|+.++. .....   .+++.+.-+..|+++||+|+.+.+
T Consensus        27 ~D~~~~~-~~~~~---~i~~~~~~k~~ilVlNK~Dl~~~~   62 (171)
T cd01856          27 RDARIPL-SSRNP---LLEKILGNKPRIIVLNKADLADPK   62 (171)
T ss_pred             eeccCcc-CcCCh---hhHhHhcCCCEEEEEehhhcCChH
Confidence            6776653 33222   245555446788999999998654

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>COG1084 Predicted GTPase [General function prediction only]

Probab=87.68  E-value=0.36  Score=45.40  Aligned_cols=101  Identities=23%  Similarity=0.282  Sum_probs=66.5

Q ss_pred             EeeccccceEEEEEecceEEEEeeCcccccCCcEEEEEEeecCcceeec--cccc-----ccc-----------cccee-
Q psy13818         93 NIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIE--GTVT-----TKV-----------LSTRK-  153 (207)
Q Consensus        93 niGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig--g~~~-----~nM-----------iaGa~-  153 (207)
                      |||-+|-.-.|+..+-+.|.--|++-     |-.+...=+=..+|++|-  |.+=     +|-           ++|+. 
T Consensus       178 NVGKSSlv~~lT~AkpEvA~YPFTTK-----~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~Il  252 (346)
T COG1084         178 NVGKSSLVRKLTTAKPEVAPYPFTTK-----GIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVIL  252 (346)
T ss_pred             CCcHHHHHHHHhcCCCccCCCCcccc-----ceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeEE
Confidence            78888888889888888887666653     445655533345888887  6654     332           23433 


Q ss_pred             --eecCCCCC---CCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHH
Q psy13818        154 --RTGNESCP---QPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQH  199 (207)
Q Consensus       154 --V~A~eg~~---~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~  199 (207)
                        +|..+.|-   ..|-.=-..|=..+. .-+++|+||+|+.+++..++..
T Consensus       253 F~~D~Se~cgy~lE~Q~~L~~eIk~~f~-~p~v~V~nK~D~~~~e~~~~~~  302 (346)
T COG1084         253 FLFDPSETCGYSLEEQISLLEEIKELFK-APIVVVINKIDIADEEKLEEIE  302 (346)
T ss_pred             EEEcCccccCCCHHHHHHHHHHHHHhcC-CCeEEEEecccccchhHHHHHH
Confidence              88888762   233333334555666 6799999999999877554433

>TIGR00436 era GTP-binding protein Era

Probab=87.61  E-value=1.7  Score=37.73  Aligned_cols=39  Identities=13%  Similarity=0.132  Sum_probs=26.0

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhH
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQA  195 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~  195 (207)
                      +|+++.. ..+ ...+..+...+.+ +|+|+||+|+++.+..
T Consensus        87 vD~~~~~-~~~-~~i~~~l~~~~~p-~ilV~NK~Dl~~~~~~  125 (270)
T TIGR00436        87 VDSDQWN-GDG-EFVLTKLQNLKRP-VVLTRNKLDNKFKDKL  125 (270)
T ss_pred             EECCCCC-chH-HHHHHHHHhcCCC-EEEEEECeeCCCHHHH
Confidence            7887764 444 4445555556654 7899999999875543

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>KOG0468|consensus

Probab=87.33  E-value=0.84  Score=47.00  Aligned_cols=59  Identities=14%  Similarity=0.075  Sum_probs=38.4

Q ss_pred             EeecCcceeeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC
Q psy13818        131 RRVEKHWSLIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK  191 (207)
Q Consensus       131 R~V~gh~rligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~  191 (207)
                      -+.|||-.|.--+.. --+.+|+-  ||+.||+ |=||.+-+.-+-+ .-.-++||+||+|+.-
T Consensus       202 lDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGV-mlntEr~ikhaiq-~~~~i~vviNKiDRLi  263 (971)
T KOG0468|consen  202 LDTPGHVNFSDETTASLRLSDGVVLVVDVAEGV-MLNTERIIKHAIQ-NRLPIVVVINKVDRLI  263 (971)
T ss_pred             ecCCCcccchHHHHHHhhhcceEEEEEEcccCc-eeeHHHHHHHHHh-ccCcEEEEEehhHHHH
Confidence            377899999821111 23334444  9999998 9888664433322 3345899999999754

>cd04157 Arl6 Arl6 subfamily

Probab=87.10  E-value=1.3  Score=33.82  Aligned_cols=67  Identities=10%  Similarity=0.026  Sum_probs=37.0

Q ss_pred             CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHH-HHHHcC----CCeEEEEEecCCCCCh
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA-AIEIMK----LKHIIILQNKIDLVKE  192 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~-il~~lG----I~~iIV~vNK~DlV~~  192 (207)
                      +.++.+. +.+|+.++-. |... ++ ..++.  +|+.+........+.+. +++.-.    =..++++.||+|+.+.
T Consensus        44 ~~~~~l~-Dt~G~~~~~~~~~~~~~~-~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~  119 (162)
T cd04157          44 NLSFTAF-DMSGQGKYRGLWEHYYKN-IQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA  119 (162)
T ss_pred             CEEEEEE-ECCCCHhhHHHHHHHHcc-CCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence            3355554 8888877764 3333 33 24444  77776532233333332 223211    1348999999999764

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>COG0218 Predicted GTPase [General function prediction only]

Probab=87.00  E-value=1.4  Score=38.62  Aligned_cols=70  Identities=17%  Similarity=0.270  Sum_probs=51.3

Q ss_pred             Ccce-eeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818        135 KHWS-LIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       135 gh~r-ligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~l  206 (207)
                      -+|. +|+-.+. |.-+.++.  ||+.-+. ...-+|-+..+...|++ ++|++||||-++.++......++++.+
T Consensus        91 e~w~~~i~~YL~~R~~L~~vvlliD~r~~~-~~~D~em~~~l~~~~i~-~~vv~tK~DKi~~~~~~k~l~~v~~~l  164 (200)
T COG0218          91 EKWKKLIEEYLEKRANLKGVVLLIDARHPP-KDLDREMIEFLLELGIP-VIVVLTKADKLKKSERNKQLNKVAEEL  164 (200)
T ss_pred             HHHHHHHHHHHhhchhheEEEEEEECCCCC-cHHHHHHHHHHHHcCCC-eEEEEEccccCChhHHHHHHHHHHHHh
Confidence            4553 4444444 43377777  9998884 77788999999999997 667799999999876666666776543

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=86.43  E-value=0.67  Score=35.11  Aligned_cols=34  Identities=24%  Similarity=0.261  Sum_probs=21.5

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      +|+++.. ..|+.+   +...++ +.+|+++||+|+.+.
T Consensus        70 ~d~~~~~-s~~~~~---~~~~~~-~p~ilv~NK~Dl~~~  103 (142)
T TIGR02528        70 QSATDPE-SRFPPG---FASIFV-KPVIGLVTKIDLAEA  103 (142)
T ss_pred             ecCCCCC-cCCChh---HHHhcc-CCeEEEEEeeccCCc
Confidence            6666654 444433   334444 378888999999763

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=84.74  E-value=1.9  Score=39.73  Aligned_cols=66  Identities=12%  Similarity=0.069  Sum_probs=40.8

Q ss_pred             CCcEEEEEEeecCcce----eecccc--ccc---ccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC
Q psy13818        123 VNEKIALSRRVEKHWS----LIEGTV--TTK---VLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK  191 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~r----ligg~~--~~n---MiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~  191 (207)
                      .|.++.+. +.+|+++    +..+..  +..   -.+++.  +|+.++. .+...+....++..+. .+|+|+||+|+.+
T Consensus        47 ~~~~~~li-DT~G~~~~~~~~~~~~~~~~~~~~~~ad~il~vvd~~~~~-~~~~~~~~~~l~~~~~-piilv~NK~D~~~  123 (435)
T PRK00093         47 LGREFILI-DTGGIEPDDDGFEKQIREQAELAIEEADVILFVVDGRAGL-TPADEEIAKILRKSNK-PVILVVNKVDGPD  123 (435)
T ss_pred             CCcEEEEE-ECCCCCCcchhHHHHHHHHHHHHHHhCCEEEEEEECCCCC-CHHHHHHHHHHHHcCC-cEEEEEECccCcc
Confidence            35566666 8888877    221100  001   112222  8888875 6666666777777775 5889999999865

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=84.46  E-value=1.5  Score=33.57  Aligned_cols=65  Identities=14%  Similarity=0.054  Sum_probs=34.4

Q ss_pred             EEEEEEeecCcceeeccccccccccc---ee--eecCCCCCCCchHHHHHHHHH---cCCCeEEEEEecCCCCChh
Q psy13818        126 KIALSRRVEKHWSLIEGTVTTKVLST---RK--RTGNESCPQPQTSEHLAAIEI---MKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       126 kiaIsR~V~gh~rligg~~~~nMiaG---a~--V~A~eg~~~pQT~EHl~il~~---lGI~~iIV~vNK~DlV~~~  193 (207)
                      .+.+. +.+|+.++-.  ....++.+   +.  +|+......++..+++.-+..   ..-..++++.||+|+.+..
T Consensus        44 ~~~i~-D~~G~~~~~~--~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~  116 (158)
T cd00878          44 SFTVW-DVGGQDKIRP--LWKHYYENTNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL  116 (158)
T ss_pred             EEEEE-ECCCChhhHH--HHHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc
Confidence            45554 7777766431  11222223   22  677654223444444432222   2345688999999998754

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>COG1160 Predicted GTPases [General function prediction only]

Probab=83.69  E-value=2.6  Score=40.91  Aligned_cols=51  Identities=25%  Similarity=0.253  Sum_probs=38.2

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh--hhHHHHHHHHHhhh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE--GQANEQHEQIVKFV  206 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~--~~~~~~~~eI~~~l  206 (207)
                      +||.+|. ..|-.+=+-++.-.|-. +||++||.|+++.  ...++..++|+..|
T Consensus       268 iDa~~~~-~~qD~~ia~~i~~~g~~-~vIvvNKWDl~~~~~~~~~~~k~~i~~~l  320 (444)
T COG1160         268 IDATEGI-SEQDLRIAGLIEEAGRG-IVIVVNKWDLVEEDEATMEEFKKKLRRKL  320 (444)
T ss_pred             EECCCCc-hHHHHHHHHHHHHcCCC-eEEEEEccccCCchhhHHHHHHHHHHHHh
Confidence            8999997 77888877777777764 7788999999986  33445556666543

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=82.79  E-value=1.4  Score=39.08  Aligned_cols=36  Identities=22%  Similarity=0.178  Sum_probs=23.6

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      +||.++.    +.+...+.+.++=+..|+++||+|+++.+
T Consensus        32 vDar~p~----~~~~~~l~~~~~~kp~iiVlNK~DL~~~~   67 (287)
T PRK09563         32 LDARIPL----SSENPMIDKIIGNKPRLLILNKSDLADPE   67 (287)
T ss_pred             EECCCCC----CCCChhHHHHhCCCCEEEEEEchhcCCHH
Confidence            7776543    22333445555557789999999998764

>PRK13768 GTPase; Provisional

Probab=82.71  E-value=1.7  Score=37.92  Aligned_cols=43  Identities=21%  Similarity=0.158  Sum_probs=29.7

Q ss_pred             eecCCCCCCCchHHHHHHHH-----HcCCCeEEEEEecCCCCChhhHHHH
Q psy13818        154 RTGNESCPQPQTSEHLAAIE-----IMKLKHIIILQNKIDLVKEGQANEQ  198 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~-----~lGI~~iIV~vNK~DlV~~~~~~~~  198 (207)
                      +|+..+. .|+..+....+.     ..++ .+|+|+||+|+++.++.++.
T Consensus       136 iD~~~~~-~~~d~~~~~~l~~~~~~~~~~-~~i~v~nK~D~~~~~~~~~~  183 (253)
T PRK13768        136 IDAVLAK-TPSDFVSLLLLALSVQLRLGL-PQIPVLNKADLLSEEELERI  183 (253)
T ss_pred             echHHhC-CHHHHHHHHHHHHHHHHHcCC-CEEEEEEhHhhcCchhHHHH
Confidence            8887764 777766655543     4564 57779999999987654443

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=82.34  E-value=5.4  Score=37.98  Aligned_cols=99  Identities=17%  Similarity=0.231  Sum_probs=64.6

Q ss_pred             cccccceeeccCCCCCC-cceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818         11 RADRLVGQVLGAVGALP-KIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV   89 (207)
Q Consensus        11 ~~d~lvG~v~g~~g~lp-~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~   89 (207)
                      +.|--.|.|+..+...| +...+++.+..+|+.                                      -.+|++|..
T Consensus       305 ~~~v~rG~vl~~~~~~p~~~~~~f~a~i~~l~~--------------------------------------~~~i~~G~~  346 (446)
T PTZ00141        305 VKDIKRGYVASDSKNDPAKECADFTAQVIVLNH--------------------------------------PGQIKNGYT  346 (446)
T ss_pred             HHHcCCceEEecCCCCCCccceEEEEEEEEECC--------------------------------------CCccCCCCe
Confidence            44556799998886544 457788877765521                                      157788877


Q ss_pred             EEEEeeccccceEEEEEe--------------------cceE--EEEeeCccccc------CCcEEEEEEeecCcceeec
Q psy13818         90 LLVNIGSLSTGGRVLATK--------------------ADLA--KISLTNPVCTE------VNEKIALSRRVEKHWSLIE  141 (207)
Q Consensus        90 lmlniGs~~t~g~V~~~~--------------------~Dla--~i~L~~Pvc~~------~G~kiaIsR~V~gh~rlig  141 (207)
                      .++.+||....|+|..+.                    .|.+  ++.|..|+|.+      ...|..+ |+- |  +-||
T Consensus       347 ~vl~~~t~~~~~~i~~i~~~ld~~t~~~~~~~p~~l~~g~~a~v~l~~~~pi~~e~~~~~~~lgrfil-rd~-g--~tva  422 (446)
T PTZ00141        347 PVLDCHTAHIACKFAEIESKIDRRSGKVLEENPKAIKSGDAAIVKMVPTKPMCVEVFNEYPPLGRFAV-RDM-K--QTVA  422 (446)
T ss_pred             EEEEEeceEEEEEEEEEEEEeccccccccCCCCcEECCCCEEEEEEEECCceEEeecccCCCCccEEE-EEC-C--CEEE
Confidence            778888888888888772                    3444  44567999988      4567666 453 3  4565


Q ss_pred             -cccc-cccccc
Q psy13818        142 -GTVT-TKVLST  151 (207)
Q Consensus       142 -g~~~-~nMiaG  151 (207)
                       |.|. -.+-+|
T Consensus       423 ~G~I~~v~~~~~  434 (446)
T PTZ00141        423 VGVIKSVEKKEG  434 (446)
T ss_pred             EEEEEEEecCCC
Confidence             6665 334344

>cd01864 Rab19 Rab19 subfamily

Probab=82.22  E-value=1.3  Score=34.34  Aligned_cols=64  Identities=9%  Similarity=0.081  Sum_probs=31.7

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchH-HHHHHHHHcCCC--eEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTS-EHLAAIEIMKLK--HIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~-EHl~il~~lGI~--~iIV~vNK~DlV~~  192 (207)
                      ++.| .+.+|+.+|-. +.-. ++ .+++.  +|+++.. ..|.. +-+..+....-.  .+|++.||+|+.+.
T Consensus        53 ~l~i-~D~~G~~~~~~~~~~~~~~-~d~~llv~d~~~~~-s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~  123 (165)
T cd01864          53 KLQI-WDTAGQERFRTITQSYYRS-ANGAIIAYDITRRS-SFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ  123 (165)
T ss_pred             EEEE-EECCChHHHHHHHHHHhcc-CCEEEEEEECcCHH-HHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence            3444 48999887763 2111 22 24433  6665432 11221 112222222211  27899999999764

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04151 Arl1 Arl1 subfamily

Probab=82.00  E-value=2.5  Score=32.66  Aligned_cols=67  Identities=13%  Similarity=0.022  Sum_probs=34.0

Q ss_pred             cEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHH-HHHHc--CCCeEEEEEecCCCCCh
Q psy13818        125 EKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLA-AIEIM--KLKHIIILQNKIDLVKE  192 (207)
Q Consensus       125 ~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~-il~~l--GI~~iIV~vNK~DlV~~  192 (207)
                      .++.+. +.+|+.+|-. |...-.-.+++.  +|+.+....+...+++. +++..  .=..++++.||+|+.+.
T Consensus        43 ~~~~i~-Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~  115 (158)
T cd04151          43 LKFQVW-DLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGA  115 (158)
T ss_pred             EEEEEE-ECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCC
Confidence            355555 8888877652 221111123333  67665321122333332 22221  12468999999999754

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=81.95  E-value=2.9  Score=32.23  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=17.2

Q ss_pred             HHHHcCCCeEEEEEecCCCCChhh
Q psy13818        171 AIEIMKLKHIIILQNKIDLVKEGQ  194 (207)
Q Consensus       171 il~~lGI~~iIV~vNK~DlV~~~~  194 (207)
                      +.+.+.-..+|+|.||+|+.+.+.
T Consensus       107 l~~~~~~~pvilv~NK~Dl~~~~~  130 (168)
T cd01897         107 IKPLFKNKPVIVVLNKIDLLTFED  130 (168)
T ss_pred             HHhhcCcCCeEEEEEccccCchhh
Confidence            334443467999999999987553

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>cd01850 CDC_Septin CDC/Septin

Probab=81.36  E-value=4  Score=36.23  Aligned_cols=51  Identities=16%  Similarity=0.186  Sum_probs=30.4

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~l  206 (207)
                      +++....+.+.-.+-+..+.. + ..+|+|+||+|+...++.....+++.+.+
T Consensus       122 i~~~~~~l~~~D~~~lk~l~~-~-v~vi~VinK~D~l~~~e~~~~k~~i~~~l  172 (276)
T cd01850         122 IEPTGHGLKPLDIEFMKRLSK-R-VNIIPVIAKADTLTPEELKEFKQRIMEDI  172 (276)
T ss_pred             EeCCCCCCCHHHHHHHHHHhc-c-CCEEEEEECCCcCCHHHHHHHHHHHHHHH
Confidence            554432224443444444432 3 46889999999998776665666666554

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	207
1s0u_A	408	Eif2gamma Apo Length = 408		2e-16
1s0u_A	408	Eif2gamma Apo Length = 408		1e-13
2d74_A	419	Crystal Structure Of Translation Initiation Factor		2e-15
2d74_A	419	Crystal Structure Of Translation Initiation Factor		2e-10
1kk3_A	410	Structure Of The Wild-Type Large Gamma Subunit Of I		5e-15
1kk3_A	410	Structure Of The Wild-Type Large Gamma Subunit Of I		9e-11
1kjz_A	410	Structure Of The Large Gamma Subunit Of Initiation		5e-15
1kjz_A	410	Structure Of The Large Gamma Subunit Of Initiation		1e-10
1kk0_A	410	Structure Of The Large Gamma Subunit Of Initiation		1e-14
1kk0_A	410	Structure Of The Large Gamma Subunit Of Initiation		1e-10
3pen_A	403	Structure Of Archaeal Initiation Factor Aif2gamma S		2e-08
2aho_A	414	Structure Of The Archaeal Initiation Factor Eif2 Al		2e-08
2pmd_A	415	The Structures Of Aif2gamma Subunit From The Archae		2e-08
3sjz_A	409	The Structure Of Aif2gamma Subunit Delta 41-45 From		2e-08

>pdb|1S0U|A Chain A, Eif2gamma Apo Length = 408

Iteration: 1
 Score = 82.0 bits (201), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 29/140 (20%)
Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGT ++P L ++D L G V+G  G LP I  ++ I  +LL R++G + E           
Sbjct: 291 VGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTKEE----------- 339
Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
                              K++ L   EVL++NIG+ +T G + + + D+A I L  P+C
Sbjct: 340 ------------------LKIEPLRTGEVLMLNIGTATTAGVITSARGDIADIKLKLPIC 381
Query: 121 TEVNEKIALSRRVEKHWSLI 140
            E+ +++A+SRRV   W LI
Sbjct: 382 AEIGDRVAISRRVGSRWRLI 401

>pdb|1S0U|A Chain A, Eif2gamma Apo Length = 408

Iteration: 1
 Score = 73.2 bits (178), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 33/51 (64%), Positives = 40/51 (78%)
Query: 157 NESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
           NE CPQPQT EHL A+EI+ +  III+QNKIDLV E QA E +EQI +FV+
Sbjct: 115 NEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVK 165

>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor Aif2betagamma Heterodimer Length = 419

Iteration: 1
 Score = 78.6 bits (192), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 29/140 (20%)
Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           +GTK++P L + D + G V+G  G LP ++ +L +  HLL+R++G   E           
Sbjct: 294 IGTKLDPYLTKGDLMAGNVVGKPGKLPPVWTDLRLEVHLLERVVGTEQE----------- 342
Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
                               V+ + R EVLL+N+G+  T G V A   D  ++ L  PVC
Sbjct: 343 ------------------LNVEPIKRKEVLLLNVGTARTMGLVTALGKDEIELKLQIPVC 384
Query: 121 TEVNEKIALSRRVEKHWSLI 140
            E  E++A+SR++   W LI
Sbjct: 385 AEPGERVAISRQIGSRWRLI 404

>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor Aif2betagamma Heterodimer Length = 419

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 56/104 (53%), Gaps = 16/104 (15%)
Query: 116 TNPVCTEVNEKIALSRRVEKHWSLI-----EGTVTTKVLSTRKRTG-------NESCPQP 163
           T+P+C     +    RRV    S I     E  +TT +       G       NE CP+P
Sbjct: 69  TSPICPYCGHETEFIRRV----SFIDSPGHEALMTTMLAGASLMDGAILVIAANEPCPRP 124
Query: 164 QTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
           QT EHL A++I+  K+III QNKI+LV + +A E + QI +F++
Sbjct: 125 QTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIK 168

>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi Complexed With Gdp-Mg2+ Length = 410

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 29/140 (20%)
Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTK++P L + D + G V+G  G LP ++  L +  HLL+R++G   E           
Sbjct: 293 VGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQE----------- 341
Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
                              KV+ + R EVLL+N+G+  T G V     D  ++ L  PVC
Sbjct: 342 ------------------LKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVC 383
Query: 121 TEVNEKIALSRRVEKHWSLI 140
            E  +++A+SR++   W LI
Sbjct: 384 AEPGDRVAISRQIGSRWRLI 403

>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi Complexed With Gdp-Mg2+ Length = 410

Iteration: 1
 Score = 63.2 bits (152), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 16/104 (15%)
Query: 116 TNPVCTEVNEKIALSRRVEKHWSLI-----EGTVTTKVLSTRKRTG-------NESCPQP 163
           T+PVC     +    RRV    S I     E  +TT +       G       NE CP+P
Sbjct: 68  TSPVCPYCGHETEFVRRV----SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRP 123
Query: 164 QTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
           QT EHL A++I+  K+III QNKI+LV + +A E + QI +F++
Sbjct: 124 QTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE 167

>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi-G235d Mutant Length = 410

Iteration: 1
 Score = 77.4 bits (189), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 29/140 (20%)
Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTK++P L + D + G V+G  G LP ++  L +  HLL+R++G   E           
Sbjct: 293 VGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQE----------- 341
Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
                              KV+ + R EVLL+N+G+  T G V     D  ++ L  PVC
Sbjct: 342 ------------------LKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVC 383
Query: 121 TEVNEKIALSRRVEKHWSLI 140
            E  +++A+SR++   W LI
Sbjct: 384 AEPGDRVAISRQIGSRWRLI 403

>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi-G235d Mutant Length = 410

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 56/104 (53%), Gaps = 16/104 (15%)
Query: 116 TNPVCTEVNEKIALSRRVEKHWSLI-----EGTVTTKVLSTRKRTG-------NESCPQP 163
           T+PVC     +    RRV    S I     E  +TT +       G       NE CP+P
Sbjct: 68  TSPVCPYCGHETEFVRRV----SFIDAPGHEALMTTMLAGASLMDGAILVIAANEPCPRP 123
Query: 164 QTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
           QT EHL A++I+  K+III QNKI+LV + +A E + QI +F++
Sbjct: 124 QTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE 167

>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi Length = 410

Iteration: 1
 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 67/140 (47%), Gaps = 29/140 (20%)
Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTK++P L + D   G V+G  G LP ++  L +  HLL+R++G   E           
Sbjct: 293 VGTKLDPYLTKGDLXAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTEQE----------- 341
Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
                              KV+ + R EVLL+N+G+  T G V     D  ++ L  PVC
Sbjct: 342 ------------------LKVEPIKRKEVLLLNVGTARTXGLVTGLGKDEIEVKLQIPVC 383
Query: 121 TEVNEKIALSRRVEKHWSLI 140
            E  +++A+SR++   W LI
Sbjct: 384 AEPGDRVAISRQIGSRWRLI 403

>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor Eif2 From Pyrococcus Abyssi Length = 410

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/104 (38%), Positives = 55/104 (52%), Gaps = 16/104 (15%)
Query: 116 TNPVCTEVNEKIALSRRVEKHWSLI-----EGTVTTKVLSTRKRTG-------NESCPQP 163
           T+PVC     +    RRV    S I     E   TT +       G       NE CP+P
Sbjct: 68  TSPVCPYCGHETEFVRRV----SFIDAPGHEALXTTXLAGASLXDGAILVIAANEPCPRP 123
Query: 164 QTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
           QT EHL A++I+  K+III QNKI+LV + +A E + QI +F++
Sbjct: 124 QTREHLXALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE 167

>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit Delta 37-47 From Sulfolobus Solfataricus In The Gdp-Bound Form. Length = 403

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/53 (45%), Positives = 37/53 (69%)
Query: 155 TGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
             NE  PQPQT EH  A+ I+ +K++II+QNK+D+V + +A  Q+ QI +F +
Sbjct: 107 AANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159

>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha- Gamma Heterodimer From Sulfolobus Solfataricus Complexed With Gdpnp Length = 414

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 156 GNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
            NE  PQPQT EH  A+ I+ +K++II+QNK+D+V + +A  Q+ QI +F +
Sbjct: 119 ANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 170

>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon Sulfolobus Solfataricus In The Gdp-Bound Form. Length = 415

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 156 GNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
            NE  PQPQT EH  A+ I+ +K++II+QNK+D+V + +A  Q+ QI +F +
Sbjct: 120 ANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 171

>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From Archaeon Sulfolobus Solfataricus Complexed With Gdp And Gdpnp Length = 409

Iteration: 1
 Score = 55.8 bits (133), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 37/52 (71%)
Query: 156 GNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
            NE  PQPQT EH  A+ I+ +K++II+QNK+D+V + +A  Q+ QI +F +
Sbjct: 114 ANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 165

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	207
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	4e-40
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	7e-24
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	3e-39
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	2e-23
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	2e-38
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	1e-23

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Length = 410

 Score =  140 bits (354), Expect = 4e-40
 Identities = 44/146 (30%), Positives = 70/146 (47%), Gaps = 30/146 (20%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGTK++P L + D + G V+G  G LP ++  L +  HLL+R++G               
Sbjct: 293 VGTKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVVGTE------------- 339

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
                           +  KV+ + R EVLL+N+G+  T G V     D  ++ L  PVC
Sbjct: 340 ----------------QELKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVC 383

Query: 121 TEVNEKIALSRRVEKHWSLI-EGTVT 145
            E  +++A+SR++   W LI  G + 
Sbjct: 384 AEPGDRVAISRQIGSRWRLIGYGIIK 409

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A* Length = 410

 Score = 96.5 bits (241), Expect = 7e-24
 Identities = 27/52 (51%), Positives = 39/52 (75%)

Query: 156 GNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
            NE CP+PQT EHL A++I+  K+III QNKI+LV + +A E + QI +F++
Sbjct: 116 ANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKALENYRQIKEFIE 167

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 408

 Score =  138 bits (349), Expect = 3e-39
 Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 29/140 (20%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           VGT ++P L ++D L G V+G  G LP I  ++ I  +LL R++G +             
Sbjct: 291 VGTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVVGTK------------- 337

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
                           +  K++ L   EVL++NIG+ +T G + + + D+A I L  P+C
Sbjct: 338 ----------------EELKIEPLRTGEVLMLNIGTATTAGVITSARGDIADIKLKLPIC 381

Query: 121 TEVNEKIALSRRVEKHWSLI 140
            E+ +++A+SRRV   W LI
Sbjct: 382 AEIGDRVAISRRVGSRWRLI 401

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 Length = 408

 Score = 95.4 bits (238), Expect = 2e-23
 Identities = 33/52 (63%), Positives = 40/52 (76%)

Query: 156 GNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
            NE CPQPQT EHL A+EI+ +  III+QNKIDLV E QA E +EQI +FV+
Sbjct: 114 ANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEKQAEENYEQIKEFVK 165

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Length = 403

 Score =  135 bits (343), Expect = 2e-38
 Identities = 35/141 (24%), Positives = 64/141 (45%), Gaps = 30/141 (21%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEIS 60
           +GT ++P+L +AD L+G ++    A   +   + I Y+LL+R++G               
Sbjct: 285 IGTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVVGA-------------- 330

Query: 61  YHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVC 120
                          K+  KV  +   E L++++GS +T G V + K D  ++ L  PV 
Sbjct: 331 ---------------KEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVA 375

Query: 121 TEVNE-KIALSRRVEKHWSLI 140
              N  +  +SR++   W +I
Sbjct: 376 VWSNNIRTVISRQIAGRWRMI 396

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A* Length = 403

 Score = 96.2 bits (240), Expect = 1e-23
 Identities = 24/52 (46%), Positives = 37/52 (71%)

Query: 156 GNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFVQ 207
            NE  PQPQT EH  A+ I+ +K++II+QNK+D+V + +A  Q+ QI +F +
Sbjct: 108 ANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTK 159

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	207
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.73
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.64
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.62
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.51
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.47
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.28
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.28
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.21
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.18
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.17
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.14
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.11
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.07
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.07
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.05
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.01
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.0
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	98.87
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	98.85
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	98.66
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	98.53
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	98.5
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	98.27
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	98.21
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	98.08
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	98.07
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	98.04
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	98.04
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	97.76
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	97.7
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	97.63
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	97.47
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	97.39
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	97.31
1wb1_A	482	Translation elongation factor SELB; selenocysteine	97.25
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	97.23
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	97.2
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	97.09
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	96.8
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	96.73
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	96.61
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	96.37
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	95.75
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	95.72
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	95.69
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	95.28
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	95.24
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	94.98
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	94.79
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	94.38
3e1y_E	204	Eukaryotic peptide chain release factor GTP-bindi	93.48
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	93.3
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	93.1
2fh5_B	214	SR-beta, signal recognition particle receptor beta	92.65
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	92.57
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	92.36
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	92.29
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	91.91
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	91.86
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	91.79
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	91.79
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	91.62
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	91.62
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	91.5
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	91.45
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	91.34
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	91.18
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	91.05
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	91.01
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	90.73
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	90.67
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	90.67
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	90.59
1nrj_B	218	SR-beta, signal recognition particle receptor beta	90.57
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	90.47
3llu_A	196	RAS-related GTP-binding protein C; structural geno	90.43
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	90.42
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	90.37
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	89.95
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	89.34
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	88.84
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	88.7
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	88.31
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	88.08
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	87.88
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	87.8
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	87.69
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	87.67
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	87.63
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	87.62
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	87.43
2ged_A	193	SR-beta, signal recognition particle receptor beta	87.16
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	86.97
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	86.55
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	86.46
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	86.11
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	85.93
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	85.85
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	85.81
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	85.47
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	85.46
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	85.44
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	84.97
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	84.63
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	84.62
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	84.61
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	84.53
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	84.48
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	84.29
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	84.18
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	84.17
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	84.13
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	83.94
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	83.78
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	83.76
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	83.71
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	83.59
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	83.52
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	83.28
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	83.12
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	82.92
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	82.67
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	82.44
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	82.04
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	81.56
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	81.33
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	81.27
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	81.2
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	81.01
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	80.98
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	80.95
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	80.92
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	80.91
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	80.36
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	80.32
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	80.09

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.73  E-value=2.1e-18  Score=154.43  Aligned_cols=114  Identities=32%  Similarity=0.587  Sum_probs=105.2

Q ss_pred             CCccCCccccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCccccee
Q psy13818          2 GTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKV   81 (207)
Q Consensus         2 gt~~dp~l~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv   81 (207)
                      ++++||.++|.|-+.|+|++.|+++|+++.+++.++++|.+..                        |.+     ++.+.
T Consensus       286 ~l~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~------------------------~~~-----~~~~~  336 (403)
T 3sjy_A          286 GTYLDPSLTKADNLLGSIITLADAEVPVLWNIRIKYNLLERVV------------------------GAK-----EMLKV  336 (403)
T ss_dssp             EESSCHHHHGGGTTTTCEEEETTCCCCEEEEEEEEEEECSBCT------------------------TCS-----SCCBC
T ss_pred             EeccccccchhhhccccEEeCCCCCCcceeEEEEEEEEEeccc------------------------ccc-----ccccC
Confidence            3568999999999999999999999999999999999998887                        442     24568


Q ss_pred             ccCccCceEEEEeeccccceEEEEEecceEEEEeeCcccccCCc-EEEEEEeecCcceeec-ccc
Q psy13818         82 QKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNE-KIALSRRVEKHWSLIE-GTV  144 (207)
Q Consensus        82 ~~l~~~E~lmlniGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~-kiaIsR~V~gh~rlig-g~~  144 (207)
                      +||+.|+.+++.+||..+.|+|..+++|.+++.|..|+|++.|+ |++|||++.+|||+|| |.|
T Consensus       337 ~~l~~~~~~~~~~gt~~~~~~v~~~~~~~~~~~l~~p~~~~~g~~r~~i~r~~~~~~r~~g~g~i  401 (403)
T 3sjy_A          337 DPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVELRRPVAVWSNNIRTVISRQIAGRWRMIGWGLV  401 (403)
T ss_dssp             CCCCTTCEEEEEETTEEEEEEEEEECSSEEEEEEEEEEECCSSSCEEEEEEEETTEEEEEEEEEE
T ss_pred             CCCCCCCEEEEEECccEEEEEEEEecCceEEEEeCCcEeeccCCEEEEEEEEeCCcEEEEEEEEE
Confidence            89999999999999999999999999999999999999999999 9999999999999999 544

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.64  E-value=1.7e-16  Score=142.29  Aligned_cols=115  Identities=40%  Similarity=0.768  Sum_probs=105.7

Q ss_pred             CCccCCccccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCccccee
Q psy13818          2 GTKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKV   81 (207)
Q Consensus         2 gt~~dp~l~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv   81 (207)
                      .+++||.++|.|...|+|++.++.+|+++.+++.++++|++..                        |.     +++.|.
T Consensus       292 ~~~~~~~~~~~~~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~------------------------g~-----~~~~~~  342 (408)
T 1s0u_A          292 GTTLDPYLTKSDALTGSVVGLPGTLPPIREKITIRANLLDRVV------------------------GT-----KEELKI  342 (408)
T ss_dssp             ECSSCGGGTGGGTTTTCEEESTTCSCCEEEEEEEEEEECCCCS------------------------SC-----SSTTCC
T ss_pred             EeccCcccchhhccceeEEECCCCCCceeEEEEEEEEEEeccc------------------------cc-----cccccc
Confidence            3568999999999999999999999999999999999998877                        55     335678


Q ss_pred             ccCccCceEEEEeeccccceEEEEEecceEEEEeeCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818         82 QKLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVT  145 (207)
Q Consensus        82 ~~l~~~E~lmlniGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~  145 (207)
                      .+|+.|+.+++.+||+.+.|+|..++.|.+++.|..|+|++.|+|+.++++++++||+|| |.|.
T Consensus       343 ~~l~~g~~~~~~~~t~~~~~~v~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~r~ig~G~i~  407 (408)
T 1s0u_A          343 EPLRTGEVLMLNIGTATTAGVITSARGDIADIKLKLPICAEIGDRVAISRRVGSRWRLIGYGTIE  407 (408)
T ss_dssp             CCCCTTCEEEEEETTEEEEEEEEEEETTEEEEEEEEEEECCTTCEEEEEEECSSSEEEEEEEEEC
T ss_pred             cCCCCCCEEEEEEcCCEEEEEEEEecCCEEEEEECCcEEecCCCEEEEEEecCCCeEEEEEEEEc
Confidence            999999999999999999999999999999999999999999999999999999999999 6653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.62  E-value=3.5e-16  Score=140.04  Aligned_cols=114  Identities=37%  Similarity=0.703  Sum_probs=104.0

Q ss_pred             CccCCccccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceec
Q psy13818          3 TKIEPTLCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQ   82 (207)
Q Consensus         3 t~~dp~l~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~   82 (207)
                      +++||.++|.|-+.|+|++.|+.+|+++.+++.++++|++..                        |.     +++.+..
T Consensus       295 ~~~~~~~~~~d~~~G~vl~~~~~~~~~~~~~~a~~~~l~~~~------------------------g~-----~~~~~~~  345 (410)
T 1kk1_A          295 TKLDPYLTKGDLMAGNVVGKPGKLPPVWDSLRLEVHLLERVV------------------------GT-----EQELKVE  345 (410)
T ss_dssp             ESSCGGGTGGGTTTTCEEECTTCSCCEEEEEEEEEEECCCCC-------------------------------CCCCSCC
T ss_pred             EecCcccchhhccceeEEecCCCCCceeEEEEEEEEEEeccc------------------------cc-----ccccccc
Confidence            478999999999999999999999999999999999998776                        44     3355789


Q ss_pred             cCccCceEEEEeeccccceEEEEEecceEEEEeeCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818         83 KLTRNEVLLVNIGSLSTGGRVLATKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVT  145 (207)
Q Consensus        83 ~l~~~E~lmlniGs~~t~g~V~~~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~  145 (207)
                      +|+.|+.+++.+||+.+.|+|..++.|.+.+.|..|+|++.|+|+.++++++++||+|| |.|.
T Consensus       346 ~l~~g~~~~~~~~t~~~~~~v~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~r~ig~G~i~  409 (410)
T 1kk1_A          346 PIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKLQIPVCAEPGDRVAISRQIGSRWRLIGYGIIK  409 (410)
T ss_dssp             CCCTTCEEEEEETTEEEEEEEEEEETTEEEEEEEEEEECCTTCEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCCCCEEEEEEcCCEEeEEEEEecCCEEEEEeCCcEEecCCCEEEEEEecCCCcEEEEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999 6653

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.51  E-value=1.3e-14  Score=129.86  Aligned_cols=88  Identities=40%  Similarity=0.633  Sum_probs=74.9

Q ss_pred             EeeCcccccCC------cEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCe
Q psy13818        114 SLTNPVCTEVN------EKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKH  179 (207)
Q Consensus       114 ~L~~Pvc~~~G------~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~  179 (207)
                      |.+.++|.++|      .++.|. +.|||.+|+     +||+.|+.        |||++|+++|||+||+.+++.+|+++
T Consensus        66 y~~~~~~~~~g~~~~~~~~i~ii-DtPGh~~f~-----~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~  139 (410)
T 1kk1_A           66 YSTSPVCPYCGHETEFVRRVSFI-DAPGHEALM-----TTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKN  139 (410)
T ss_dssp             EESSSBCTTTCCBCEEEEEEEEE-ECSSHHHHH-----HHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCC
T ss_pred             ccccccccccCcccccccEEEEE-ECCChHHHH-----HHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCc
Confidence            55666665545      456776 999999999     89988875        99999977999999999999999999


Q ss_pred             EEEEEecCCCCChhhHHHHHHHHHhhhC
Q psy13818        180 IIILQNKIDLVKEGQANEQHEQIVKFVQ  207 (207)
Q Consensus       180 iIV~vNK~DlV~~~~~~~~~~eI~~~l~  207 (207)
                      +|||+||||++++++.++.+++++++++
T Consensus       140 iivviNK~Dl~~~~~~~~~~~~i~~~l~  167 (410)
T 1kk1_A          140 IIIAQNKIELVDKEKALENYRQIKEFIE  167 (410)
T ss_dssp             EEEEEECGGGSCHHHHHHHHHHHHHHHT
T ss_pred             EEEEEECccCCCHHHHHHHHHHHHHHHH
Confidence            9999999999998877788889988763

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.47  E-value=3.2e-14  Score=127.47  Aligned_cols=88  Identities=45%  Similarity=0.690  Sum_probs=73.0

Q ss_pred             EeeCcccccCC------cEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCe
Q psy13818        114 SLTNPVCTEVN------EKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKH  179 (207)
Q Consensus       114 ~L~~Pvc~~~G------~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~  179 (207)
                      |.....|.++|      .++.|. +.|||.+|+     +||+.|+.        +||++|+++|||+||+.+++.+|+++
T Consensus        64 y~~~~~~~~~g~~~~~~~~i~ii-DtPGh~~f~-----~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~  137 (408)
T 1s0u_A           64 YTTKPRCPNCLAETEFLRRVSFV-DSPGHETLM-----ATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDK  137 (408)
T ss_dssp             EESSSBCTTSCCBCEEEEEEEEE-ECSSHHHHH-----HHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCC
T ss_pred             ccccccccccCcccccccEEEEE-ECCCHHHHH-----HHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCe
Confidence            55555555444      356666 999999999     99998875        89999977999999999999999999


Q ss_pred             EEEEEecCCCCChhhHHHHHHHHHhhhC
Q psy13818        180 IIILQNKIDLVKEGQANEQHEQIVKFVQ  207 (207)
Q Consensus       180 iIV~vNK~DlV~~~~~~~~~~eI~~~l~  207 (207)
                      +|||+||+|++++++.++.+++++++++
T Consensus       138 iivv~NK~Dl~~~~~~~~~~~~i~~~l~  165 (408)
T 1s0u_A          138 IIIVQNKIDLVDEKQAEENYEQIKEFVK  165 (408)
T ss_dssp             EEEEEECTTSSCTTTTTTHHHHHHHHHT
T ss_pred             EEEEEEccCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999998766677888887753

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.28  E-value=3.9e-12  Score=113.79  Aligned_cols=76  Identities=38%  Similarity=0.564  Sum_probs=68.3

Q ss_pred             cEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHH
Q psy13818        125 EKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQAN  196 (207)
Q Consensus       125 ~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~  196 (207)
                      .++.|. +.|||.+|+     +||++++.        +||+++.+++||+||+.+++.+|++++|+|+||+|++++++.+
T Consensus        75 ~~~~ii-DtPGh~~~~-----~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~~  148 (403)
T 3sjy_A           75 RRISFI-DAPGHEVLM-----ATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEAL  148 (403)
T ss_dssp             EEEEEE-ECCCCGGGH-----HHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHH
T ss_pred             ceEEEE-ECCCcHHHH-----HHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHHH
Confidence            466666 999999999     89887765        8999997799999999999999999999999999999998888


Q ss_pred             HHHHHHHhhh
Q psy13818        197 EQHEQIVKFV  206 (207)
Q Consensus       197 ~~~~eI~~~l  206 (207)
                      +.++++++++
T Consensus       149 ~~~~~i~~~l  158 (403)
T 3sjy_A          149 SQYRQIKQFT  158 (403)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888888875

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.28  E-value=4.9e-12  Score=115.22  Aligned_cols=83  Identities=19%  Similarity=0.264  Sum_probs=65.7

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCC-------CchHHHHHHHH
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQ-------PQTSEHLAAIE  173 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~-------pQT~EHl~il~  173 (207)
                      |.++.++..+     +.++.|. +.|||.+|+     +||++|+.        |||++|. +       |||+||+.++.
T Consensus        84 d~~~~~~~~~-----~~~~~ii-DTPGh~~f~-----~~~~~~~~~aD~~ilVVDa~~g~-~e~~~~~~~qt~e~l~~~~  151 (439)
T 3j2k_7           84 EVGRAYFETE-----KKHFTIL-DAPGHKSFV-----PNMIGGASQADLAVLVISARKGE-FETGFEKGGQTREHAMLAK  151 (439)
T ss_pred             EEeEEEEecC-----CeEEEEE-ECCChHHHH-----HHHHhhHhhCCEEEEEEECCCCc-cccccCCCchHHHHHHHHH
Confidence            4555555543     5577776 999999999     99998865        9999986 5       89999999999


Q ss_pred             HcCCCeEEEEEecCCCCChhhHHHHHHHHH
Q psy13818        174 IMKLKHIIILQNKIDLVKEGQANEQHEQIV  203 (207)
Q Consensus       174 ~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~  203 (207)
                      .+|++++|||+||||+++.++.+++++++.
T Consensus       152 ~~~v~~iIvviNK~Dl~~~~~~~~~~~~i~  181 (439)
T 3j2k_7          152 TAGVKHLIVLINKMDDPTVNWSNERYEECK  181 (439)
T ss_pred             HcCCCeEEEEeecCCCcccchHHHHHHHHH
Confidence            999999999999999976544344444433

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.21  E-value=2.7e-12  Score=118.60  Aligned_cols=75  Identities=21%  Similarity=0.279  Sum_probs=65.2

Q ss_pred             CcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhH
Q psy13818        124 NEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQA  195 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~  195 (207)
                      +.++.|. +.|||.+|+     +||+.++.        |||++|. +|||+||+.+++.+|+++ |||+||||+++.++.
T Consensus        72 ~~~i~ii-DtPGh~~~~-----~~~~~~~~~aD~~ilVvda~~g~-~~qt~e~l~~~~~~~ip~-IvviNK~Dl~~~~~~  143 (482)
T 1wb1_A           72 NYRITLV-DAPGHADLI-----RAVVSAADIIDLALIVVDAKEGP-KTQTGEHMLILDHFNIPI-IVVITKSDNAGTEEI  143 (482)
T ss_dssp             TEEEEEC-CCSSHHHHH-----HHHHHHTTSCCEEEEEEETTTCS-CHHHHHHHHHHHHTTCCB-CEEEECTTSSCHHHH
T ss_pred             CEEEEEE-ECCChHHHH-----HHHHHHHhhCCEEEEEEecCCCc-cHHHHHHHHHHHHcCCCE-EEEEECCCcccchhH
Confidence            5577776 999999999     88887755        8999996 999999999999999999 999999999987777


Q ss_pred             HHHHHHHHhhh
Q psy13818        196 NEQHEQIVKFV  206 (207)
Q Consensus       196 ~~~~~eI~~~l  206 (207)
                      ++..+++++++
T Consensus       144 ~~~~~~l~~~l  154 (482)
T 1wb1_A          144 KRTEMIMKSIL  154 (482)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777777764

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.18  E-value=4.3e-11  Score=107.35  Aligned_cols=88  Identities=11%  Similarity=0.162  Sum_probs=71.8

Q ss_pred             EecceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCC
Q psy13818        106 TKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKL  177 (207)
Q Consensus       106 ~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI  177 (207)
                      ++-|.++.++..     .+.++.|. +.|||.+|+     +||+.|+.        || ++|. +|||+||+.+++.+|+
T Consensus        46 iTi~~~~~~~~~-----~~~~i~ii-DtPGh~~f~-----~~~~~~~~~aD~ailVvd-~~g~-~~qt~e~~~~~~~~~i  112 (370)
T 2elf_A           46 TSSDITMYNNDK-----EGRNMVFV-DAHSYPKTL-----KSLITALNISDIAVLCIP-PQGL-DAHTGECIIALDLLGF  112 (370)
T ss_dssp             EESSSEEEEECS-----SSSEEEEE-ECTTTTTCH-----HHHHHHHHTCSEEEEEEC-TTCC-CHHHHHHHHHHHHTTC
T ss_pred             EEEEeeEEEEec-----CCeEEEEE-ECCChHHHH-----HHHHHHHHHCCEEEEEEc-CCCC-cHHHHHHHHHHHHcCC
Confidence            344666666554     36678887 999999999     88887755        88 8886 9999999999999999


Q ss_pred             CeEEEEEe-cCCCCChhhHHHHHHHHHhhhC
Q psy13818        178 KHIIILQN-KIDLVKEGQANEQHEQIVKFVQ  207 (207)
Q Consensus       178 ~~iIV~vN-K~DlV~~~~~~~~~~eI~~~l~  207 (207)
                      +++||++| |||+ +.++.++..++++++++
T Consensus       113 ~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~  142 (370)
T 2elf_A          113 KHGIIALTRSDST-HMHAIDELKAKLKVITS  142 (370)
T ss_dssp             CEEEEEECCGGGS-CHHHHHHHHHHHHHHTT
T ss_pred             CeEEEEEEeccCC-CHHHHHHHHHHHHHHHH
Confidence            99999999 9999 77766667788887763

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.17  E-value=3.5e-11  Score=107.58  Aligned_cols=77  Identities=19%  Similarity=0.300  Sum_probs=63.2

Q ss_pred             CCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC-hh
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK-EG  193 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~-~~  193 (207)
                      .+.++.|. +.|||.+|+     +||.+|+.        |||++|. ++||+||+.+++.+|++++||++||||+++ .+
T Consensus        64 ~~~~~~ii-DtpG~~~f~-----~~~~~~~~~aD~~ilVvda~~g~-~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~  136 (397)
T 1d2e_A           64 AARHYAHT-DCPGHADYV-----KNMITGTAPLDGCILVVAANDGP-MPQTREHLLLARQIGVEHVVVYVNKADAVQDSE  136 (397)
T ss_dssp             SSCEEEEE-ECSSHHHHH-----HHHHHTSSCCSEEEEEEETTTCS-CHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHH
T ss_pred             CCeEEEEE-ECCChHHHH-----HHHHhhHhhCCEEEEEEECCCCC-CHHHHHHHHHHHHcCCCeEEEEEECcccCCCHH
Confidence            35678877 999999999     89977755        8999996 999999999999999999999999999995 33


Q ss_pred             hHHHHHHHHHhhh
Q psy13818        194 QANEQHEQIVKFV  206 (207)
Q Consensus       194 ~~~~~~~eI~~~l  206 (207)
                      ..+...+++++++
T Consensus       137 ~~~~~~~~~~~~l  149 (397)
T 1d2e_A          137 MVELVELEIRELL  149 (397)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3344455666654

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.14  E-value=3.3e-11  Score=110.58  Aligned_cols=77  Identities=17%  Similarity=0.256  Sum_probs=51.2

Q ss_pred             CcEEEEEEeecCcceeecccccccccccee--------eecCCCC------CCCchHHHHHHHHHcCCCeEEEEEecCCC
Q psy13818        124 NEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESC------PQPQTSEHLAAIEIMKLKHIIILQNKIDL  189 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~------~~pQT~EHl~il~~lGI~~iIV~vNK~Dl  189 (207)
                      +.++.|. +.|||.+|+     +||+.|+.        |||++|.      .+|||+||+.++..+|++++|||+||||+
T Consensus       120 ~~~~~ii-DtPGh~~f~-----~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivviNK~Dl  193 (467)
T 1r5b_A          120 HRRFSLL-DAPGHKGYV-----TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVINKMDE  193 (467)
T ss_dssp             SEEEEEC-CCCC----------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEECTTS
T ss_pred             CeEEEEE-ECCCcHHHH-----HHHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEEEECccC
Confidence            5577776 999999999     99988865        8999985      13899999999999999999999999999


Q ss_pred             CC--h--hhHHHHHHHHHhhh
Q psy13818        190 VK--E--GQANEQHEQIVKFV  206 (207)
Q Consensus       190 V~--~--~~~~~~~~eI~~~l  206 (207)
                      .+  +  ++.++..+++++++
T Consensus       194 ~~~~~~~~~~~~i~~e~~~~l  214 (467)
T 1r5b_A          194 PSVQWSEERYKECVDKLSMFL  214 (467)
T ss_dssp             TTCSSCHHHHHHHHHHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHHH
Confidence            54  2  33344455565554

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.11  E-value=1.1e-10  Score=105.54  Aligned_cols=86  Identities=20%  Similarity=0.244  Sum_probs=66.8

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeE
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHI  180 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~i  180 (207)
                      |.++.++..+     +.++.|. +.|||.+|.     +||+.++.        +||++|. ++||+||+.+++.+|++++
T Consensus        93 ~~~~~~~~~~-----~~~~~ii-DtpGh~~f~-----~~~~~~~~~aD~~ilVvDa~~g~-~~qt~~~l~~~~~~~~~~i  160 (434)
T 1zun_B           93 DVAYRYFSTA-----KRKFIIA-DTPGHEQYT-----RNMATGASTCDLAIILVDARYGV-QTQTRRHSYIASLLGIKHI  160 (434)
T ss_dssp             CCEEEEEECS-----SEEEEEE-ECCCSGGGH-----HHHHHHHTTCSEEEEEEETTTCS-CHHHHHHHHHHHHTTCCEE
T ss_pred             EeeeeEeecC-----CceEEEE-ECCChHHHH-----HHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeE
Confidence            4455555443     5577776 999999999     88876654        8999997 9999999999999999999


Q ss_pred             EEEEecCCCCCh--hhHHHHHHHHHhhh
Q psy13818        181 IILQNKIDLVKE--GQANEQHEQIVKFV  206 (207)
Q Consensus       181 IV~vNK~DlV~~--~~~~~~~~eI~~~l  206 (207)
                      |||+||+|++++  +..++..+++++++
T Consensus       161 IvviNK~Dl~~~~~~~~~~i~~~~~~~~  188 (434)
T 1zun_B          161 VVAINKMDLNGFDERVFESIKADYLKFA  188 (434)
T ss_dssp             EEEEECTTTTTSCHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCcCCcccHHHHHHHHHHHHHHH
Confidence            999999999974  33334455565543

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.07  E-value=1.9e-10  Score=102.73  Aligned_cols=76  Identities=16%  Similarity=0.263  Sum_probs=62.0

Q ss_pred             CcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC-hhh
Q psy13818        124 NEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK-EGQ  194 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~-~~~  194 (207)
                      +.++.|. +.|||.+|+     +||..++.        +|++++. ++||+||+.+++.+|++++|+++||||+++ .+.
T Consensus        74 ~~~~~ii-DtpG~~~f~-----~~~~~~~~~aD~~ilVvda~~g~-~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~  146 (405)
T 2c78_A           74 KRHYSHV-DCPGHADYI-----KNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQVGVPYIVVFMNKVDMVDDPEL  146 (405)
T ss_dssp             SCEEEEE-ECCCSGGGH-----HHHHHHHTTCSSEEEEEETTTCC-CHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHH
T ss_pred             CeEEEEE-ECCChHHHH-----HHHHHHHHHCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCEEEEEEECccccCcHHH
Confidence            5678877 999999999     88876654        8999996 999999999999999999999999999995 333


Q ss_pred             HHHHHHHHHhhh
Q psy13818        195 ANEQHEQIVKFV  206 (207)
Q Consensus       195 ~~~~~~eI~~~l  206 (207)
                      .+...+++++++
T Consensus       147 ~~~~~~~~~~~l  158 (405)
T 2c78_A          147 LDLVEMEVRDLL  158 (405)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            344445565553

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.07  E-value=1e-10  Score=111.02  Aligned_cols=77  Identities=18%  Similarity=0.312  Sum_probs=58.0

Q ss_pred             CcEEEEEEeecCcceeecccccccccccee--------eecCCCC----C--CCchHHHHHHHHHcCCCeEEEEEecCCC
Q psy13818        124 NEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESC----P--QPQTSEHLAAIEIMKLKHIIILQNKIDL  189 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~----~--~pQT~EHl~il~~lGI~~iIV~vNK~Dl  189 (207)
                      +.++.|+ +.|||.+|+     +||+.|+.        |||++|.    .  +|||+||+.++..+|++++|||+||||+
T Consensus       254 ~~~i~ii-DTPGh~~f~-----~~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIvviNKiDl  327 (592)
T 3mca_A          254 KKIYEIG-DAPGHRDFI-----SGMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVVSVNKLDL  327 (592)
T ss_dssp             -----CC-EEESSSEEE-----EECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEEEEECGGG
T ss_pred             CeEEEEE-ECCChHHHH-----HHHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEEecccc
Confidence            5567776 999999999     99999876        8888762    3  8999999999999999999999999999


Q ss_pred             CC--hhhHHHHHHHHHhhh
Q psy13818        190 VK--EGQANEQHEQIVKFV  206 (207)
Q Consensus       190 V~--~~~~~~~~~eI~~~l  206 (207)
                      ++  .++.++..+++.+++
T Consensus       328 ~~~~~~~~~~i~~el~~~l  346 (592)
T 3mca_A          328 MSWSEDRFQEIKNIVSDFL  346 (592)
T ss_dssp             GTTCHHHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHH
Confidence            87  344455556666654

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.05  E-value=1.1e-10  Score=105.81  Aligned_cols=77  Identities=21%  Similarity=0.347  Sum_probs=63.2

Q ss_pred             CCcEEEEEEeecCcceeecccccccccccee--------eecCCC-------CCCCchHHHHHHHHHcCCCeEEEEEecC
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNES-------CPQPQTSEHLAAIEIMKLKHIIILQNKI  187 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg-------~~~pQT~EHl~il~~lGI~~iIV~vNK~  187 (207)
                      .+.++.|. +.|||.+|.     +||..++.        +||++|       + ++||+||+.+++.+|++++||++|||
T Consensus        82 ~~~~~~ii-DtpG~~~f~-----~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~-~~qt~~~~~~~~~~~~~~iivviNK~  154 (435)
T 1jny_A           82 KKYFFTII-DAPGHRDFV-----KNMITGASQADAAILVVSAKKGEYEAGMSV-EGQTREHIILAKTMGLDQLIVAVNKM  154 (435)
T ss_dssp             SSCEEEEC-CCSSSTTHH-----HHHHHTSSCCSEEEEEEECSTTHHHHHHST-TCHHHHHHHHHHHTTCTTCEEEEECG
T ss_pred             CCeEEEEE-ECCCcHHHH-----HHHHhhhhhcCEEEEEEECCCCcccccccc-chHHHHHHHHHHHcCCCeEEEEEEcc
Confidence            35678887 999999999     88877755        899987       6 99999999999999999999999999


Q ss_pred             CCCCh----hhHHHHHHHHHhhh
Q psy13818        188 DLVKE----GQANEQHEQIVKFV  206 (207)
Q Consensus       188 DlV~~----~~~~~~~~eI~~~l  206 (207)
                      |+++.    ++.++..+++++++
T Consensus       155 Dl~~~~~~~~~~~~~~~~i~~~~  177 (435)
T 1jny_A          155 DLTEPPYDEKRYKEIVDQVSKFM  177 (435)
T ss_dssp             GGSSSTTCHHHHHHHHHHHHHHH
T ss_pred             cCCCccccHHHHHHHHHHHHHHH
Confidence            99982    33344556666654

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.01  E-value=8.8e-11  Score=107.50  Aligned_cols=76  Identities=21%  Similarity=0.310  Sum_probs=61.9

Q ss_pred             CcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCC-------chHHHHHHHHHcCCCeEEEEEecCC
Q psy13818        124 NEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQP-------QTSEHLAAIEIMKLKHIIILQNKID  188 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~p-------QT~EHl~il~~lGI~~iIV~vNK~D  188 (207)
                      +.++.|. +.|||.+|+     +||++|+.        |||++|. +|       ||+||+.+++.+|++++|||+||||
T Consensus        84 ~~~~~ii-DtPGh~~f~-----~~~~~~~~~aD~~ilVvda~~g~-~~~sf~~~~qt~~~~~~~~~~~v~~iivviNK~D  156 (458)
T 1f60_A           84 KYQVTVI-DAPGHRDFI-----KNMITGTSQADCAILIIAGGVGE-FEAGISKDGQTREHALLAFTLGVRQLIVAVNKMD  156 (458)
T ss_dssp             SEEEEEE-ECCCCTTHH-----HHHHHSSSCCSEEEEEEECSHHH-HHHHTCTTSHHHHHHHHHHHTTCCEEEEEEECGG
T ss_pred             CceEEEE-ECCCcHHHH-----HHHHhhhhhCCEEEEEEeCCcCc-cccccCcchhHHHHHHHHHHcCCCeEEEEEEccc
Confidence            4567776 999999999     99988766        8898885 56       9999999999999999999999999


Q ss_pred             CCC--hhhHHHHHHHHHhhh
Q psy13818        189 LVK--EGQANEQHEQIVKFV  206 (207)
Q Consensus       189 lV~--~~~~~~~~~eI~~~l  206 (207)
                      +++  ++..++..+++++++
T Consensus       157 l~~~~~~~~~~i~~~~~~~l  176 (458)
T 1f60_A          157 SVKWDESRFQEIVKETSNFI  176 (458)
T ss_dssp             GGTTCHHHHHHHHHHHHHHH
T ss_pred             cccCCHHHHHHHHHHHHHHH
Confidence            995  344445556666553

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.00  E-value=3.3e-10  Score=103.90  Aligned_cols=86  Identities=14%  Similarity=0.249  Sum_probs=64.8

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCC------CCCchHHHHHHHHH
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESC------PQPQTSEHLAAIEI  174 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~------~~pQT~EHl~il~~  174 (207)
                      |..+.++..+     +.++.|. +.|||.+|+     +||..++.        |||++|.      .++||+||+.+++.
T Consensus       100 ~~~~~~~~~~-----~~~~~ii-DTPG~~~f~-----~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~  168 (483)
T 3p26_A          100 SICTSHFSTH-----RANFTIV-DAPGHRDFV-----PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASS  168 (483)
T ss_dssp             CCCEEEEECS-----SCEEEEE-CCCCCGGGH-----HHHHHHHTTCSEEEEEEECCC------CCCCHHHHHHHHHHHH
T ss_pred             EeeeEEEecC-----CceEEEE-ECCCcHHHH-----HHHHHhhhhCCEEEEEEECCCCccccccchhhhHHHHHHHHHH
Confidence            5556666553     5577777 999999999     88887755        8898872      37999999999999


Q ss_pred             cCCCeEEEEEecCCCCChh--hHHHHHHHHHhh
Q psy13818        175 MKLKHIIILQNKIDLVKEG--QANEQHEQIVKF  205 (207)
Q Consensus       175 lGI~~iIV~vNK~DlV~~~--~~~~~~~eI~~~  205 (207)
                      +|++++|||+||||+++++  ..++..+++.++
T Consensus       169 ~~~~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~  201 (483)
T 3p26_A          169 LGIHNLIIAMNKMDNVDWSQQRFEEIKSKLLPY  201 (483)
T ss_dssp             TTCCCEEEEEECGGGGTTCHHHHHHHHHHHHHH
T ss_pred             cCCCcEEEEEECcCcccchHHHHHHHHHHHHHH
Confidence            9999999999999999843  233334444443

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=98.87  E-value=1.8e-09  Score=111.18  Aligned_cols=77  Identities=17%  Similarity=0.230  Sum_probs=63.6

Q ss_pred             CCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh-h
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE-G  193 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~-~  193 (207)
                      .+.++.|. +.|||.+|+     +||+.|+.        |||++|. ++||+||+.+++.+|++++|||+||||+++. +
T Consensus       357 ~~~kI~II-DTPGHedF~-----~~mi~gas~AD~aILVVDAtdGv-~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e  429 (1289)
T 3avx_A          357 PTRHYAHV-DCPGHADYV-----KNMITGAAQMDGAILVVAATDGP-MPQTREHILLGRQVGVPYIIVFLNKCDMVDDEE  429 (1289)
T ss_dssp             SSCEEEEE-ECCCHHHHH-----HHHHHTSCCCSEEEEEEETTTCS-CTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHH
T ss_pred             CCEEEEEE-ECCChHHHH-----HHHHHHHhhCCEEEEEEcCCccC-cHHHHHHHHHHHHcCCCeEEEEEeecccccchh
Confidence            35678887 999999999     99987765        8999996 9999999999999999999999999999963 3


Q ss_pred             hHHHHHHHHHhhh
Q psy13818        194 QANEQHEQIVKFV  206 (207)
Q Consensus       194 ~~~~~~~eI~~~l  206 (207)
                      ..+...+++++++
T Consensus       430 ~le~i~eEi~elL  442 (1289)
T 3avx_A          430 LLELVEMEVRELL  442 (1289)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH
Confidence            3344556666654

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=98.85  E-value=2.5e-09  Score=101.94  Aligned_cols=65  Identities=17%  Similarity=0.227  Sum_probs=56.0

Q ss_pred             CCcEEEEEEeecCcceeecccccccccccee--------eecCCCC------CCCchHHHHHHHHHcCCCeEEEEEecCC
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESC------PQPQTSEHLAAIEIMKLKHIIILQNKID  188 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~------~~pQT~EHl~il~~lGI~~iIV~vNK~D  188 (207)
                      .+.++.|. +.|||.+|+     +||+.++.        |||++|.      .++||+||+.++..+|++++|||+||||
T Consensus       243 ~~~~~~ii-DTPG~e~f~-----~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIVVvNKiD  316 (611)
T 3izq_1          243 HRANFTIV-DAPGHRDFV-----PNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAMNKMD  316 (611)
T ss_dssp             SSCEEEEE-ECCSSSCHH-----HHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEEEEECTT
T ss_pred             CCceEEEE-ECCCCcccH-----HHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEEEEeccc
Confidence            35678777 999999999     88888765        8888761      3799999999999999999999999999


Q ss_pred             CCChh
Q psy13818        189 LVKEG  193 (207)
Q Consensus       189 lV~~~  193 (207)
                      +++++
T Consensus       317 l~~~~  321 (611)
T 3izq_1          317 NVDWS  321 (611)
T ss_dssp             TTTTC
T ss_pred             ccchh
Confidence            99843

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=98.66  E-value=1.1e-08  Score=97.55  Aligned_cols=83  Identities=19%  Similarity=0.175  Sum_probs=66.9

Q ss_pred             cccCCcEEEEEEeecCcceeeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHH
Q psy13818        120 CTEVNEKIALSRRVEKHWSLIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQAN  196 (207)
Q Consensus       120 c~~~G~kiaIsR~V~gh~rligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~  196 (207)
                      |.|.+.++-|+ +.|||-+|.+=+.. -.+++||.  |||.+|+ ||||+.|+..+...|++. |+++||||....+. .
T Consensus        62 ~~~~~~~iNlI-DTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV-~~qT~~v~~~a~~~~lp~-i~~INKmDr~~a~~-~  137 (638)
T 3j25_A           62 FQWENTKVNII-DTPGHMDFLAEVYRSLSVLDGAILLISAKDGV-QAQTRILFHALRKMGIPT-IFFINKIDQNGIDL-S  137 (638)
T ss_dssp             CBCSSCBCCCE-ECCCSSSTHHHHHHHHTTCSEEECCEESSCTT-CSHHHHHHHHHHHHTCSC-EECCEECCSSSCCS-H
T ss_pred             EEECCEEEEEE-ECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCC-cHHHHHHHHHHHHcCCCe-EEEEeccccccCCH-H
Confidence            45678899998 99999999953333 46777877  9999997 999999999999999996 57799999977653 4


Q ss_pred             HHHHHHHhhh
Q psy13818        197 EQHEQIVKFV  206 (207)
Q Consensus       197 ~~~~eI~~~l  206 (207)
                      ...++|++.|
T Consensus       138 ~~~~~i~~~l  147 (638)
T 3j25_A          138 TVYQDIKEKL  147 (638)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            5667776654

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=98.53  E-value=7.6e-08  Score=90.45  Aligned_cols=62  Identities=18%  Similarity=0.238  Sum_probs=53.7

Q ss_pred             CCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      .+.++.|. +.|||.+|.     .+|..|+.        +|+++|. +|||+||+..++.++++ +||++||||+.+.
T Consensus        49 ~~~~i~~i-DTPGhe~f~-----~~~~~~~~~aD~aILVVda~~g~-~~qT~e~l~~~~~~~vP-iIVviNKiDl~~~  118 (501)
T 1zo1_I           49 ENGMITFL-DTPGHAAFT-----SMRARGAQATDIVVLVVAADDGV-MPQTIEAIQHAKAAQVP-VVVAVNKIDKPEA  118 (501)
T ss_dssp             TSSCCCEE-CCCTTTCCT-----TSBCSSSBSCSSEEEEEETTTBS-CTTTHHHHHHHHHTTCC-EEEEEECSSSSTT
T ss_pred             CCEEEEEE-ECCCcHHHH-----HHHHHHHhhCCEEEEEeecccCc-cHHHHHHHHHHHhcCce-EEEEEEecccccc
Confidence            45678887 999999999     66666654        8999997 99999999999999998 9999999999864

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=98.50  E-value=1.5e-07  Score=88.69  Aligned_cols=82  Identities=12%  Similarity=0.097  Sum_probs=67.3

Q ss_pred             ccCCcEEEEEEeecCcceeeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHH
Q psy13818        121 TEVNEKIALSRRVEKHWSLIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANE  197 (207)
Q Consensus       121 ~~~G~kiaIsR~V~gh~rligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~  197 (207)
                      .|.+.++-|+ +.|||-+|.|=+.- =.+++||.  |||.+|+ ||||+..+..+...+++. |+++||||....+ ..+
T Consensus        96 ~~~~~~iNlI-DTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV-~~qT~~v~~~a~~~~lp~-i~fINK~Dr~~ad-~~~  171 (548)
T 3vqt_A           96 PYRDRVVNLL-DTPGHQDFSEDTYRVLTAVDSALVVIDAAKGV-EAQTRKLMDVCRMRATPV-MTFVNKMDREALH-PLD  171 (548)
T ss_dssp             EETTEEEEEE-CCCCGGGCSHHHHHHHHSCSEEEEEEETTTBS-CHHHHHHHHHHHHTTCCE-EEEEECTTSCCCC-HHH
T ss_pred             EECCEEEEEE-eCCCcHHHHHHHHHHHHhcCceEEEeecCCCc-ccccHHHHHHHHHhCCce-EEEEecccchhcc-hhH
Confidence            4578899998 99999999953333 47889988  9999998 999999999999999985 6789999997755 345


Q ss_pred             HHHHHHhhh
Q psy13818        198 QHEQIVKFV  206 (207)
Q Consensus       198 ~~~eI~~~l  206 (207)
                      ..++|++.|
T Consensus       172 ~~~~i~~~l  180 (548)
T 3vqt_A          172 VMADIEQHL  180 (548)
T ss_dssp             HHHHHHHHH
T ss_pred             hhhhhhhhc
Confidence            667777654

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=98.27  E-value=1.9e-06  Score=83.01  Aligned_cols=93  Identities=16%  Similarity=0.087  Sum_probs=68.9

Q ss_pred             eEEEEeeCcccccCCcEEEEEEeecCcceeeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEec
Q psy13818        110 LAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNK  186 (207)
Q Consensus       110 la~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK  186 (207)
                      .+.++++..-....+.++-|+ +.|||-+|.+=+.. =.+.+||.  |||.||+ ++||+..+..+...|++ .|+++||
T Consensus        70 ~~s~~~~~~~~~~~~~~iNlI-DTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV-~~qT~~v~~~a~~~~lp-~i~~iNK  146 (709)
T 4fn5_A           70 AVTTFWKGSRGQYDNYRVNVI-DTPGHVDFTIEVERSLRVLDGAVVVFCGTSGV-EPQSETVWRQANKYGVP-RIVYVNK  146 (709)
T ss_dssp             EEEEEECCTTSCSCCEEEEEE-CCCSCTTCHHHHHHHHHHCSEEEEEEETTTCS-CHHHHHHHHHHHHHTCC-EEEEEEC
T ss_pred             eEEEEeccCcCCCCCEEEEEE-eCCCCcccHHHHHHHHHHhCeEEEEEECCCCC-chhHHHHHHHHHHcCCC-eEEEEcc
Confidence            344555443222235588888 99999999953333 47889988  9999998 99999999999999998 5778999


Q ss_pred             CCCCChhhHHHHHHHHHhhh
Q psy13818        187 IDLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       187 ~DlV~~~~~~~~~~eI~~~l  206 (207)
                      ||....+ .....++|++.+
T Consensus       147 iDr~~a~-~~~~~~ei~~~l  165 (709)
T 4fn5_A          147 MDRQGAN-FLRVVEQIKKRL  165 (709)
T ss_dssp             SSSTTCC-HHHHHHHHHHHH
T ss_pred             ccccCcc-HHHHHHHhhhhc
Confidence            9997654 244566666543

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=98.21  E-value=4.7e-07  Score=85.72  Aligned_cols=62  Identities=18%  Similarity=0.190  Sum_probs=52.6

Q ss_pred             CCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      .|.++.|. +.|||.+|.     ++|..++.        +|+++|. +|||+||+..+...+++ +|||+||+|+.+.
T Consensus        50 ~g~~i~~i-DTPGhe~f~-----~~~~~~~~~aD~vILVVDa~dg~-~~qt~e~l~~~~~~~vP-iIVViNKiDl~~~  119 (537)
T 3izy_P           50 SGEKITFL-DTPGHAAFS-----AMRARGTQVTDIVILVVAADDGV-MKQTVESIQHAKDAHVP-IVLAINKCDKAEA  119 (537)
T ss_dssp             CSSCCBCE-ECSSSCCTT-----TSBBSSSBSBSSCEEECBSSSCC-CHHHHHHHHHHHTTTCC-EEECCBSGGGTTT
T ss_pred             CCCEEEEE-ECCChHHHH-----HHHHHHHccCCEEEEEEECCCCc-cHHHHHHHHHHHHcCCc-EEEEEeccccccc
Confidence            45577777 999999999     66655544        8899997 99999999999999997 8999999999764

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=98.08  E-value=3.7e-06  Score=78.91  Aligned_cols=80  Identities=13%  Similarity=0.089  Sum_probs=60.3

Q ss_pred             CCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHH
Q psy13818        123 VNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQH  199 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~  199 (207)
                      .+.++.|. +.|||.+|.. ..-.-...+++.  +|+.++. ++||++|+..+...+++ +|+++||+|+.+.+. .+..
T Consensus        80 ~~~~i~li-DTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~-~~~t~~~~~~~~~~~ip-iivviNK~Dl~~~~~-~~~~  155 (529)
T 2h5e_A           80 HDCLVNLL-DTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGV-EDRTRKLMEVTRLRDTP-ILTFMNKLDRDIRDP-MELL  155 (529)
T ss_dssp             TTEEEEEE-CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS-CHHHHHHHHHHTTTTCC-EEEEEECTTSCCSCH-HHHH
T ss_pred             CCeEEEEE-ECCCChhHHHHHHHHHHHCCEEEEEEeCCccc-hHHHHHHHHHHHHcCCC-EEEEEcCcCCccccH-HHHH
Confidence            46678887 9999999984 111123345544  8999997 99999999999999998 899999999987653 3456


Q ss_pred             HHHHhhh
Q psy13818        200 EQIVKFV  206 (207)
Q Consensus       200 ~eI~~~l  206 (207)
                      +++++.+
T Consensus       156 ~~i~~~l  162 (529)
T 2h5e_A          156 DEVENEL  162 (529)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6666654

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=98.07  E-value=3e-06  Score=81.26  Aligned_cols=76  Identities=20%  Similarity=0.139  Sum_probs=57.1

Q ss_pred             EEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHH
Q psy13818        126 KIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQI  202 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI  202 (207)
                      ++.|. +.|||.+|.+ +.-.-...+|+.  |||++|. ++||.+|+..+...+++ +|+|+||||+.+.+ .++..+++
T Consensus        74 ~inli-DTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv-~~qt~~~~~~a~~~~ip-iIvviNKiDl~~a~-~~~v~~el  149 (600)
T 2ywe_A           74 KLHLI-DTPGHVDFSYEVSRALAACEGALLLIDASQGI-EAQTVANFWKAVEQDLV-IIPVINKIDLPSAD-VDRVKKQI  149 (600)
T ss_dssp             EEEEE-CCCCSGGGHHHHHHHHHTCSEEEEEEETTTBC-CHHHHHHHHHHHHTTCE-EEEEEECTTSTTCC-HHHHHHHH
T ss_pred             EEEEE-ECCCcHhHHHHHHHHHHhCCEEEEEEECCCCc-cHHHHHHHHHHHHCCCC-EEEEEeccCccccC-HHHHHHHH
Confidence            56676 9999999984 111123345555  9999997 99999999999999998 89999999998754 23445556


Q ss_pred             Hhh
Q psy13818        203 VKF  205 (207)
Q Consensus       203 ~~~  205 (207)
                      .+.
T Consensus       150 ~~~  152 (600)
T 2ywe_A          150 EEV  152 (600)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            554

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=98.04  E-value=5.3e-06  Score=79.35  Aligned_cols=77  Identities=16%  Similarity=0.133  Sum_probs=57.2

Q ss_pred             cEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHH
Q psy13818        125 EKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQ  201 (207)
Q Consensus       125 ~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~e  201 (207)
                      .++.|. +.|||.+|.+ +.-.-...+|+.  +||++|. ++||.+|+..+...+++ +|+|+||+|+.+.+ .++..++
T Consensus        71 ~~l~li-DTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv-~~qt~~~~~~~~~~~ip-iIvViNKiDl~~a~-~~~v~~e  146 (599)
T 3cb4_D           71 YQLNFI-DTPGHVDFSYEVSRSLAACEGALLVVDAGQGV-EAQTLANCYTAMEMDLE-VVPVLNKIDLPAAD-PERVAEE  146 (599)
T ss_dssp             EEEEEE-ECCCCGGGHHHHHHHHHHCSEEEEEEETTTCC-CTHHHHHHHHHHHTTCE-EEEEEECTTSTTCC-HHHHHHH
T ss_pred             EEEEEE-ECCCchHHHHHHHHHHHHCCEEEEEEECCCCC-CHHHHHHHHHHHHCCCC-EEEeeeccCccccc-HHHHHHH
Confidence            367776 9999999984 221223345555  9999997 99999999999999996 89999999998754 2334455


Q ss_pred             HHhh
Q psy13818        202 IVKF  205 (207)
Q Consensus       202 I~~~  205 (207)
                      +.+.
T Consensus       147 i~~~  150 (599)
T 3cb4_D          147 IEDI  150 (599)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5544

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=98.04  E-value=9.1e-06  Score=77.52  Aligned_cols=63  Identities=19%  Similarity=0.231  Sum_probs=49.5

Q ss_pred             EEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC
Q psy13818        126 KIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK  191 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~  191 (207)
                      .+.|. +.|||.+|.. +.-.-...+++.  +|+++|+ +|||.||+..++..+++ +|||+||||+.+
T Consensus        71 ~i~li-DTPGhe~F~~~~~r~~~~aD~aILVvDa~~Gv-~~qT~e~l~~l~~~~vP-iIVViNKiDl~~  136 (594)
T 1g7s_A           71 GLFFI-DTPGHEAFTTLRKRGGALADLAILIVDINEGF-KPQTQEALNILRMYRTP-FVVAANKIDRIH  136 (594)
T ss_dssp             EEEEE-CCCTTSCCTTSBCSSSBSCSEEEEEEETTTCC-CHHHHHHHHHHHHTTCC-EEEEEECGGGST
T ss_pred             CEEEE-ECCCcHHHHHHHHHHHhhCCEEEEEEECCCCc-cHhHHHHHHHHHHcCCe-EEEEeccccccc
Confidence            47776 9999999983 111112234444  9999997 99999999999999998 899999999974

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=97.76  E-value=7.3e-05  Score=72.28  Aligned_cols=79  Identities=18%  Similarity=0.130  Sum_probs=59.2

Q ss_pred             CcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHH
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHE  200 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~  200 (207)
                      ..++.|+ +.|||.+|.. ..-.-...+|+.  ||+.+|. ++||.+++..+...+++ +++++||+|+...+ ..+..+
T Consensus        81 ~~~i~li-DTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv-~~qt~~~~~~~~~~~ip-~ilviNKiD~~~~~-~~~~~~  156 (704)
T 2rdo_7           81 PHRINII-DTPGHVDFTIEVERSMRVLDGAVMVYCAVGGV-QPQSETVWRQANKYKVP-RIAFVNKMDRMGAN-FLKVVN  156 (704)
T ss_pred             ceeEEEE-eCCCccchHHHHHHHHHHCCEEEEEEeCCCCC-cHHHHHHHHHHHHcCCC-EEEEEeCCCccccc-HHHHHH
Confidence            3577777 9999999984 222223346655  9999997 99999999999999997 55679999998755 345667


Q ss_pred             HHHhhh
Q psy13818        201 QIVKFV  206 (207)
Q Consensus       201 eI~~~l  206 (207)
                      ++++.+
T Consensus       157 ~l~~~l  162 (704)
T 2rdo_7          157 QIKTRL  162 (704)
T ss_pred             HHHHHh
Confidence            776654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=97.70  E-value=7e-05  Score=70.30  Aligned_cols=80  Identities=16%  Similarity=0.160  Sum_probs=59.7

Q ss_pred             CCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHH
Q psy13818        123 VNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQH  199 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~  199 (207)
                      .+.++.|. +.|||.+|.. ..-.-...+++.  +|+.++. ++||.+++..+...+++ +|+|+||+|+...+. .+..
T Consensus        80 ~~~~i~li-DTPG~~df~~~~~~~l~~aD~allVvDa~~g~-~~~t~~~~~~~~~~~iP-iivviNK~Dl~~~~~-~~~l  155 (528)
T 3tr5_A           80 KDYLINLL-DTPGHADFTEDTYRTLTAVDSALMVIDAAKGV-EPRTIKLMEVCRLRHTP-IMTFINKMDRDTRPS-IELL  155 (528)
T ss_dssp             TTEEEEEE-CCCCSTTCCHHHHHGGGGCSEEEEEEETTTCS-CHHHHHHHHHHHTTTCC-EEEEEECTTSCCSCH-HHHH
T ss_pred             CCEEEEEE-ECCCchhHHHHHHHHHHhCCEEEEEEeCCCCC-CHHHHHHHHHHHHcCCC-EEEEEeCCCCccccH-HHHH
Confidence            36678887 9999999986 222223446655  9999997 99999999999999986 788899999976542 3445


Q ss_pred             HHHHhhh
Q psy13818        200 EQIVKFV  206 (207)
Q Consensus       200 ~eI~~~l  206 (207)
                      +++++.+
T Consensus       156 ~ei~~~l  162 (528)
T 3tr5_A          156 DEIESIL  162 (528)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            5665543

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=97.63  E-value=8.6e-05  Score=66.43  Aligned_cols=93  Identities=14%  Similarity=0.151  Sum_probs=73.7

Q ss_pred             ccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818         10 CRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV   89 (207)
Q Consensus        10 ~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~   89 (207)
                      .+.|--.|.+++. +.  ++..+++.++.+|..                                      ..+|+.|..
T Consensus       263 ~~~~i~~Gdvl~~-~~--~~~~~f~a~v~~l~~--------------------------------------~~~i~~g~~  301 (370)
T 2elf_A          263 QAKDIERGFIISD-KE--IVTTDYTLECTVSKF--------------------------------------TKKIEPASV  301 (370)
T ss_dssp             CGGGCCTTCEEES-CC--EEEEEEEEEEEECTT--------------------------------------SCCBCTTCE
T ss_pred             CHHHcCCceEEEC-CC--ceeEEEEEEEEEECC--------------------------------------CCCCCCCCE
Confidence            3456677888888 54  788888888766511                                      367899999


Q ss_pred             EEEEeeccccceEEEEEe--cc-----------eEEEEeeCcccccCCcEEEEEEeecCcceeec-ccc
Q psy13818         90 LLVNIGSLSTGGRVLATK--AD-----------LAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTV  144 (207)
Q Consensus        90 lmlniGs~~t~g~V~~~~--~D-----------la~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~  144 (207)
                      .++.+||..+.|+|..++  .|           .+.+.|..|+|.+.|+|..+. +-..+||.+| |.+
T Consensus       302 ~~~~~~t~~~~~~v~~l~~d~~~~~~~~~g~~~~v~l~~~~pi~~~~~~rfilr-~~~~~~~tig~G~~  369 (370)
T 2elf_A          302 LHLFVGLQSEPVRVEKILVDGNEVEEAKPGSTCVLELSGNKKLAYSKQDRFLLA-NLDLTQRFAAYGFS  369 (370)
T ss_dssp             EEEEETTEEEEEEEEEEEETTEEESCBCTTCEEEEEEEEEEEEEECTTSCEEEE-CTTSSSCEEEEEEE
T ss_pred             EEEEEcCCEEEEEEEEEEeCCCcceeecCCCEEEEEEEECcEEEEeCCCEEEEE-ECCCCCEEEEEEEe
Confidence            999999999999999984  22           567788999999999988874 6666799998 543

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=97.47  E-value=0.00016  Score=64.38  Aligned_cols=98  Identities=19%  Similarity=0.234  Sum_probs=76.1

Q ss_pred             cccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCc
Q psy13818          9 LCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNE   88 (207)
Q Consensus         9 l~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E   88 (207)
                      +.+.|--.|.+++.++. |+...+++.++++|..--                                 ..+..+|..|.
T Consensus       275 i~~~~i~~G~~l~~~~~-~~~~~~f~a~v~~l~~~~---------------------------------~~~~~~~~~g~  320 (397)
T 1d2e_A          275 LKREDLRRGLVMAKPGS-IQPHQKVEAQVYILTKEE---------------------------------GGRHKPFVSHF  320 (397)
T ss_dssp             CCGGGCCTTCEEESTTS-CCCEEEEEEEEEECCGGG---------------------------------TSCSSCBCTTC
T ss_pred             cchhccCceeEEeCCCC-CCcccEEEEEEEEecccc---------------------------------ccCccccCCCC
Confidence            35677888999999996 666899999988774322                                 11356899999


Q ss_pred             eEEEEeeccccceEEEEEe--------cc--eEEEEeeCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818         89 VLLVNIGSLSTGGRVLATK--------AD--LAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVT  145 (207)
Q Consensus        89 ~lmlniGs~~t~g~V~~~~--------~D--la~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~  145 (207)
                      ..++.+||+...|+|. +.        .|  .+.+.|..|+|.+.|.|..| |+   .|+.+| |.|.
T Consensus       321 ~~~~~~~t~~~~~~i~-l~~~~~~l~~~~~~~v~~~~~~p~~~~~~~r~~l-r~---~~~ti~~G~i~  383 (397)
T 1d2e_A          321 MPVMFSLTWDMACRII-LPPGKELAMPGEDLKLTLILRQPMILEKGQRFTL-RD---GNRTIGTGLVT  383 (397)
T ss_dssp             CCEEEETTEEEEEEEE-CCSSCCCBCTTCEEEEEEEEEEEECCCTTCEEEE-EE---TTEEEEEEEEE
T ss_pred             EEEEEEecCEEEEEEE-EcCCcccccCCCEEEEEEEECCeEEEccCCeEEE-Ee---CCeEEEEEEEe
Confidence            9999999999999997 42        34  45667789999999999987 55   468888 7765

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=97.39  E-value=0.00022  Score=68.78  Aligned_cols=80  Identities=15%  Similarity=0.128  Sum_probs=60.0

Q ss_pred             CCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHH
Q psy13818        123 VNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQH  199 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~  199 (207)
                      .+.++.|. +.|||.+|.. +.-.-...+++.  +|+.++. ++||.+++..+...+++ +++++||+|+...+ ..+..
T Consensus        75 ~~~~i~li-DTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~-~~~t~~~~~~~~~~~~p-~ivviNKiD~~~~~-~~~~~  150 (691)
T 1dar_A           75 KDHRINII-DTPGHVDFTIEVERSMRVLDGAIVVFDSSQGV-EPQSETVWRQAEKYKVP-RIAFANKMDKTGAD-LWLVI  150 (691)
T ss_dssp             TTEEEEEE-CCCSSTTCHHHHHHHHHHCSEEEEEEETTTCS-CHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC-HHHHH
T ss_pred             CCeEEEEE-ECcCccchHHHHHHHHHHCCEEEEEEECCCCc-chhhHHHHHHHHHcCCC-EEEEEECCCcccCC-HHHHH
Confidence            46678887 9999999874 222223446655  9999997 99999999999999987 56779999998754 34566


Q ss_pred             HHHHhhh
Q psy13818        200 EQIVKFV  206 (207)
Q Consensus       200 ~eI~~~l  206 (207)
                      +++++.+
T Consensus       151 ~~l~~~l  157 (691)
T 1dar_A          151 RTMQERL  157 (691)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHHh
Confidence            6776654

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=97.31  E-value=0.00027  Score=62.94  Aligned_cols=97  Identities=24%  Similarity=0.243  Sum_probs=75.6

Q ss_pred             ccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818         10 CRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV   89 (207)
Q Consensus        10 ~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~   89 (207)
                      .+.|--.|.+++.++. |+...+++.++++|..--                                 ..+..+|..|..
T Consensus       294 ~~~~i~~G~~l~~~~~-~~~~~~f~a~v~~l~~~~---------------------------------~~~~~~~~~g~~  339 (405)
T 2c78_A          294 SREEVERGQVLAKPGS-ITPHTKFEASVYVLKKEE---------------------------------GGRHTGFFSGYR  339 (405)
T ss_dssp             CTTTCCTTCEEESTTS-SEEEEEEEEEEEECCGGG---------------------------------TSCSSCBCTTCC
T ss_pred             cHhhcCceEEEEcCCC-CceeEEEEEEEEEecccC---------------------------------CCccccccCCce
Confidence            4677788999999996 677899999988874321                                 113557899999


Q ss_pred             EEEEeeccccceEEEEEe--------cc--eEEEEeeCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818         90 LLVNIGSLSTGGRVLATK--------AD--LAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVT  145 (207)
Q Consensus        90 lmlniGs~~t~g~V~~~~--------~D--la~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~  145 (207)
                      .++.+||+.+.|+|. +.        .|  .+.+.|..|+|.+.|.|..| |+   .|+.|| |.|.
T Consensus       340 ~~~~~~t~~~~~~i~-~~~~~~~l~~~~~~~v~~~~~~p~~~~~~~rf~l-r~---~~~ti~~G~i~  401 (405)
T 2c78_A          340 PQFYFRTTDVTGVVQ-LPPGVEMVMPGDNVTFTVELIKPVALEEGLRFAI-RE---GGRTVGAGVVT  401 (405)
T ss_dssp             CEEEETTEEEEEEEE-CCTTCCCBCTTCEEEEEEEEEEEEEECTTCEEEE-EE---TTEEEEEEEEE
T ss_pred             EEEEEcccEEEEEEE-EccCccccCCCCEEEEEEEECceEEEccCCEEEE-Ec---CCeEEEEEEEE
Confidence            999999999999998 43        23  45677889999999999887 56   468888 7665

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=97.25  E-value=0.00055  Score=63.14  Aligned_cols=94  Identities=16%  Similarity=0.206  Sum_probs=72.5

Q ss_pred             cccceeec-cCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceEE
Q psy13818         13 DRLVGQVL-GAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLL   91 (207)
Q Consensus        13 d~lvG~v~-g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lm   91 (207)
                      |--.|.|+ +.++.++ ...+++.++.+|+.                                   .  ..+|+.|..++
T Consensus       273 ~i~~Gdvl~~~~~~~~-~~~~~~a~v~~l~~-----------------------------------~--~~~l~~g~~~~  314 (482)
T 1wb1_A          273 QIYRGXILTSKDTKLQ-TVDKIVAKIKISDI-----------------------------------F--KYNLTPKMKVH  314 (482)
T ss_dssp             CCCSSCBCCCTTCCCC-CEEEEEECCCCCSS-----------------------------------C--CSCCCSSCEEE
T ss_pred             hccccceEecCCCCCc-eeeEEEEEEEEecc-----------------------------------C--CcccCCCCEEE
Confidence            44568888 8887655 45788888866621                                   1  36899999999


Q ss_pred             EEeeccccceEEEEEe------------c------c--eEEEEeeCcccccCCcEEEEEEeecCc---ceeec-cccc
Q psy13818         92 VNIGSLSTGGRVLATK------------A------D--LAKISLTNPVCTEVNEKIALSRRVEKH---WSLIE-GTVT  145 (207)
Q Consensus        92 lniGs~~t~g~V~~~~------------~------D--la~i~L~~Pvc~~~G~kiaIsR~V~gh---~rlig-g~~~  145 (207)
                      +.+||..+.|+|..+.            .      |  .+.+.|..|+|.+.|.|..+. +...+   ||.+| |.|.
T Consensus       315 l~~~t~~~~~~v~~~~~~~~d~~~~~~~~~~l~~g~~~~v~l~~~~pv~~~~~~rfilr-~~~~~~~~~~tvg~G~v~  391 (482)
T 1wb1_A          315 LNVGMLIVPAVAVPFKKVTFGKTEENIILNEVISGNEXYXAFELEEKVLAEVGDRVLIT-RLDLPPTTLRIXGHGLIE  391 (482)
T ss_dssp             EEETTEEEEEEEEEEEECCSSSCCCEEECCSSCCSSCCCEEEEEEEEECCCSSCCCBEE-CTTSCTTSCCCCCBCCEE
T ss_pred             EEEcccEEEEEEEEEeccccccccccccchhhcCCCEEEEEEEcCccEEecCCCeEEEE-ECCCCccCceEeeEEEEE
Confidence            9999999999999887            1      2  567788899999999998875 54444   99998 7775

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=97.23  E-value=0.00029  Score=67.58  Aligned_cols=78  Identities=12%  Similarity=0.086  Sum_probs=55.1

Q ss_pred             CcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHH
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHE  200 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~  200 (207)
                      +.++.|. +.+||.+|.. ..-.-....++.  +|+.+|. ++||++|+..+...+++.+ +++||+|+.  ....+..+
T Consensus        73 ~~~~nli-DTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~-~~qt~~~~~~~~~~~ip~i-lv~NKiD~~--~~~~~~~~  147 (665)
T 2dy1_A           73 GHRVFLL-DAPGYGDFVGEIRGALEAADAALVAVSAEAGV-QVGTERAWTVAERLGLPRM-VVVTKLDKG--GDYYALLE  147 (665)
T ss_dssp             TEEEEEE-ECCCSGGGHHHHHHHHHHCSEEEEEEETTTCS-CHHHHHHHHHHHHTTCCEE-EEEECGGGC--CCHHHHHH
T ss_pred             CEEEEEE-eCCCccchHHHHHHHHhhcCcEEEEEcCCccc-chhHHHHHHHHHHccCCEE-EEecCCchh--hhHHHHHH
Confidence            4466665 8999999873 111112234443  8999996 9999999999999998755 679999998  33455566


Q ss_pred             HHHhhh
Q psy13818        201 QIVKFV  206 (207)
Q Consensus       201 eI~~~l  206 (207)
                      ++++.+
T Consensus       148 ~l~~~l  153 (665)
T 2dy1_A          148 DLRSTL  153 (665)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            666543

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=97.20  E-value=0.0005  Score=66.32  Aligned_cols=80  Identities=13%  Similarity=0.130  Sum_probs=58.7

Q ss_pred             CCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHH
Q psy13818        123 VNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQH  199 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~  199 (207)
                      .+.++.|. +.|||.+|.. ..-.-...+++.  +|+.++. ++||.+++..+...+++ +|+++||+|+...+ ..+..
T Consensus        73 ~~~~i~li-DTPG~~df~~~~~~~l~~aD~~llVvDa~~g~-~~~~~~~~~~~~~~~~p-~ilviNK~Dl~~~~-~~~~~  148 (693)
T 2xex_A           73 EGHRVNII-DTPGHVDFTVEVERSLRVLDGAVTVLDAQSGV-EPQTETVWRQATTYGVP-RIVFVNKMDKLGAN-FEYSV  148 (693)
T ss_dssp             TTEEEEEE-CCCCCSSCCHHHHHHHHHCSEEEEEEETTTBS-CHHHHHHHHHHHHTTCC-EEEEEECTTSTTCC-HHHHH
T ss_pred             CCeeEEEE-ECcCCcchHHHHHHHHHHCCEEEEEECCCCCC-cHHHHHHHHHHHHcCCC-EEEEEECCCccccc-hHHHH
Confidence            46678887 9999999874 221122345555  8999997 99999999999999986 67789999998754 34455


Q ss_pred             HHHHhhh
Q psy13818        200 EQIVKFV  206 (207)
Q Consensus       200 ~eI~~~l  206 (207)
                      +++++.+
T Consensus       149 ~~l~~~l  155 (693)
T 2xex_A          149 STLHDRL  155 (693)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            6666543

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=97.09  E-value=0.00026  Score=69.76  Aligned_cols=64  Identities=20%  Similarity=0.093  Sum_probs=50.4

Q ss_pred             CcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCC
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLV  190 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV  190 (207)
                      +.++.|. +.|||.+|.+ +.-.-...+|+.  +|+.+|. ++||.+++..+...+++ +|+++||+|+.
T Consensus        97 ~~~i~li-DTPG~~df~~~~~~~l~~aD~ailVvDa~~g~-~~qt~~~~~~~~~~~~p-~ilviNK~D~~  163 (842)
T 1n0u_A           97 SFLINLI-DSPGHVDFSSEVTAALRVTDGALVVVDTIEGV-CVQTETVLRQALGERIK-PVVVINKVDRA  163 (842)
T ss_dssp             EEEEEEE-CCCCCCSSCHHHHHHHHTCSEEEEEEETTTBS-CHHHHHHHHHHHHTTCE-EEEEEECHHHH
T ss_pred             CceEEEE-ECcCchhhHHHHHHHHHhCCEEEEEEeCCCCC-CHHHHHHHHHHHHcCCC-eEEEEECCCcc
Confidence            4567776 9999999985 322223456666  9999997 99999998888888886 57899999987

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=96.80  E-value=0.0019  Score=58.22  Aligned_cols=91  Identities=11%  Similarity=0.171  Sum_probs=69.6

Q ss_pred             cccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceEEE
Q psy13818         13 DRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLV   92 (207)
Q Consensus        13 d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lml   92 (207)
                      |--.|.|++.++..|++..+++.++.+|.                                       ..+|+.|...++
T Consensus       315 ~i~~G~~l~~~~~~~~~~~~f~a~~~~l~---------------------------------------~~~l~~g~~~~~  355 (434)
T 1zun_B          315 DISRGDLLVHADNVPQVSDAFDAMLVWMA---------------------------------------EEPMLPGKKYDI  355 (434)
T ss_dssp             CCCTTCEEEETTSCCCEEEEEEEEEEECC---------------------------------------SSCBCTTCCEEE
T ss_pred             ccCCccEEECCCCCCCcccEEEEEEEEec---------------------------------------cccCCCCCEEEE
Confidence            33469999999999999999999876551                                       137899999999


Q ss_pred             EeeccccceEEEEEec------------------c--eEEEEeeCcccccCCc------EEEEEEeecCcceeec-ccc
Q psy13818         93 NIGSLSTGGRVLATKA------------------D--LAKISLTNPVCTEVNE------KIALSRRVEKHWSLIE-GTV  144 (207)
Q Consensus        93 niGs~~t~g~V~~~~~------------------D--la~i~L~~Pvc~~~G~------kiaIsR~V~gh~rlig-g~~  144 (207)
                      .+||..+.|+|..+..                  |  .+.+.|..|+|.+.+.      |..+ |+-.+. +-|| |.|
T Consensus       356 ~~~t~~~~~~v~~~~~~~d~~~~~~~~~~~l~~~d~~~v~~~~~~p~~~~~~~~~~~~grf~l-~d~~~~-~tv~~G~i  432 (434)
T 1zun_B          356 KRATSYVPGSIASITHRVDVNTLEEGPASSLQLNEIGRVKVSLDAPIALDGYSSNRTTGAFIV-IDRLTN-GTVAAGMI  432 (434)
T ss_dssp             ECSSCEEEEEEEEEEEEECTTTCCCCCCSCBCTTCEEEEEEEEEEEEECCCTTTCTTTTEEEE-ECTTTC-CEEEEEEE
T ss_pred             EEcCCEEEEEEEEEeeeeccccccccCccEeCCCCEEEEEEEECCeEEEcccccCCccceEEE-EECCCC-cEEEEEEE
Confidence            9999999999998862                  3  4566778999999998      6665 453332 4555 554

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=96.73  E-value=0.0044  Score=46.39  Aligned_cols=66  Identities=20%  Similarity=0.254  Sum_probs=44.9

Q ss_pred             CcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      +.++.+. +.+|+.+|-. +.-.-.-.+++.  +|++++. .+|+.+++..+...+++ +++|.||+|+.+.
T Consensus        54 ~~~~~l~-Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~-~~~~~~~l~~~~~~~~p-~ilv~nK~Dl~~~  122 (178)
T 2lkc_A           54 DKKITFL-DTPGHEAFTTMRARGAQVTDIVILVVAADDGV-MPQTVEAINHAKAANVP-IIVAINKMDKPEA  122 (178)
T ss_dssp             TEEEEES-CCCSSSSSSCSCCSSCCCCCEEEEEEETTCCC-CHHHHHHHHHHGGGSCC-EEEEEETTTSSCS
T ss_pred             CceEEEE-ECCCCHHHHHHHHHHHhhCCEEEEEEECCCCC-cHHHHHHHHHHHhCCCC-EEEEEECccCCcC
Confidence            4456554 8888887763 211111123333  7888875 89999998877777776 8999999999874

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=96.61  E-value=0.0027  Score=49.92  Aligned_cols=49  Identities=10%  Similarity=-0.015  Sum_probs=35.6

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVK  204 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~  204 (207)
                      +|+.++. ..+..+.+..++..+++ +|+|+||+|+.+.++..+..+++.+
T Consensus       123 ~d~~~~~-~~~~~~~~~~l~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~  171 (223)
T 4dhe_A          123 MDARRPL-TELDRRMIEWFAPTGKP-IHSLLTKCDKLTRQESINALRATQK  171 (223)
T ss_dssp             EETTSCC-CHHHHHHHHHHGGGCCC-EEEEEECGGGSCHHHHHHHHHHHHH
T ss_pred             EeCCCCC-CHHHHHHHHHHHhcCCC-EEEEEeccccCChhhHHHHHHHHHH
Confidence            8888875 66777777777666664 8899999999987765555554444

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=96.37  E-value=0.0049  Score=55.57  Aligned_cols=93  Identities=18%  Similarity=0.283  Sum_probs=73.0

Q ss_pred             cccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceE
Q psy13818         11 RADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVL   90 (207)
Q Consensus        11 ~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~l   90 (207)
                      ..|--.|.+++.++..|....+++.++.+|.                                      .-.+|+.|...
T Consensus       304 ~~~i~~Gd~l~~~~~~~~~~~~f~a~v~~l~--------------------------------------~~~~l~~g~~~  345 (435)
T 1jny_A          304 KKDIKRGDVVGHPNNPPTVADEFTARIIVVW--------------------------------------HPTALANGYTP  345 (435)
T ss_dssp             GGGCCTTCEEECTTSCCCEESEEEEEEEECC--------------------------------------CSSCBCTTCCC
T ss_pred             HHHcCCccEecCCCCCceEeEEEEEEEEEEC--------------------------------------CCCcCCCCCEE
Confidence            4566689999999988888999988887651                                      13578999999


Q ss_pred             EEEeeccccceEEEEEe--------------------cce--EEEEeeCcccccCCc------EEEEEEeecCcceeec-
Q psy13818         91 LVNIGSLSTGGRVLATK--------------------ADL--AKISLTNPVCTEVNE------KIALSRRVEKHWSLIE-  141 (207)
Q Consensus        91 mlniGs~~t~g~V~~~~--------------------~Dl--a~i~L~~Pvc~~~G~------kiaIsR~V~gh~rlig-  141 (207)
                      ++.+||+.+.|+|..+.                    .|.  +.+.|..|+|.+.+.      |..|. +-   ++-+| 
T Consensus       346 ~~~~~t~~~~~~i~~~~~~~d~~~~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~lr-~~---~~tv~~  421 (435)
T 1jny_A          346 VLHVHTASVACRVSELVSKLDPRTGQEAEKNPQFLKQGDVAIVKFKPIKPLCVEKYNEFPPLGRFAMR-DM---GKTVGV  421 (435)
T ss_dssp             EEEETTEEEEEEEEEEEEEECTTTCSEEEESCSCBCTTCEEEEEEEESSCEECCCTTTSGGGTEEEEE-ET---TEEEEE
T ss_pred             EEEeCCcEEEEEEEEEeeeeccCcccccccCccccCCCCEEEEEEEECceEEEecCCcCCcCccEEEE-EC---CeEEEE
Confidence            99999999999998873                    343  566778999999999      88774 52   57887 


Q ss_pred             cccc
Q psy13818        142 GTVT  145 (207)
Q Consensus       142 g~~~  145 (207)
                      |.|.
T Consensus       422 G~i~  425 (435)
T 1jny_A          422 GIIV  425 (435)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            7665

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=95.75  E-value=0.014  Score=50.21  Aligned_cols=50  Identities=22%  Similarity=0.255  Sum_probs=36.6

Q ss_pred             eecCCCCCCCchHHH-HHHHHHcCCCeEEEEEecCCCC-ChhhHHHHHHHHHhh
Q psy13818        154 RTGNESCPQPQTSEH-LAAIEIMKLKHIIILQNKIDLV-KEGQANEQHEQIVKF  205 (207)
Q Consensus       154 V~A~eg~~~pQT~EH-l~il~~lGI~~iIV~vNK~DlV-~~~~~~~~~~eI~~~  205 (207)
                      +|++++. .+++.+. +..++..+++ +|+|+||+|++ +.+...+..+++.+.
T Consensus       100 vD~~~~~-~~~~~~~~~~~l~~~~~p-vilV~NK~Dl~~~~~~~~~~~~~l~~~  151 (308)
T 3iev_A          100 IDATEGW-RPRDEEIYQNFIKPLNKP-VIVVINKIDKIGPAKNVLPLIDEIHKK  151 (308)
T ss_dssp             EETTTBS-CHHHHHHHHHHTGGGCCC-EEEEEECGGGSSSGGGGHHHHHHHHHH
T ss_pred             EeCCCCC-CchhHHHHHHHHHhcCCC-EEEEEECccCCCCHHHHHHHHHHHHHh
Confidence            8888886 7888777 7777776664 88999999999 555555555555543

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=95.72  E-value=0.012  Score=61.21  Aligned_cols=98  Identities=18%  Similarity=0.229  Sum_probs=76.0

Q ss_pred             cccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCc
Q psy13818          9 LCRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNE   88 (207)
Q Consensus         9 l~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E   88 (207)
                      +.+.|--.|+|++.++. |+...+++.++++|.+--                        |         ....+|..|+
T Consensus       566 I~~~dI~RGdVL~~~~~-~~~~~~F~A~V~~L~~~e------------------------g---------g~~~pi~~G~  611 (1289)
T 3avx_A          566 IKREEIERGQVLAKPGT-IKPHTKFESEVYILSKDE------------------------G---------GRHTPFFKGY  611 (1289)
T ss_dssp             CCGGGCCTTCEEESTTS-CCEEEEEEEEEEECCGGG------------------------T---------SCSSCBCTTC
T ss_pred             cchhcCCcccEEecCCC-CccceeEEEEEEEEcccc------------------------c---------cccccccCCC
Confidence            35677788999999997 566889999988774321                        1         1245788999


Q ss_pred             eEEEEeeccccceEEEEEe--------cc--eEEEEeeCcccccCCcEEEEEEeecCcceeec-cccc
Q psy13818         89 VLLVNIGSLSTGGRVLATK--------AD--LAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTVT  145 (207)
Q Consensus        89 ~lmlniGs~~t~g~V~~~~--------~D--la~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~~  145 (207)
                      ..++.+||....|+|. +.        .|  .+.+.|..|+|.+.|.|..| |+   .++.|| |.|.
T Consensus       612 ~p~l~igT~~vtg~I~-L~~~~~~L~~Gd~a~V~L~l~~Pi~ve~g~RFiL-Rd---~grTIG~G~V~  674 (1289)
T 3avx_A          612 RPQFYFRTTDVTGTIE-LPEGVEMVMPGDNIKMVVTLIHPIAMDDGLRFAI-RE---GGRTVGAGVVA  674 (1289)
T ss_dssp             CCEEECSSCEEEEEEE-CCTTCCCBCTTCCCEEEEEEEEEEECCTTCEEEE-EE---TTEEEEEEEEE
T ss_pred             ceEEEEeeeeEEEEEE-ECCCcccccCCCEEEEEEEECceEEEccCCEEEE-Ee---CCeEEEEEEEe
Confidence            9999999999999997 42        23  56778899999999999887 55   468998 8776

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=95.69  E-value=0.024  Score=42.78  Aligned_cols=51  Identities=18%  Similarity=0.176  Sum_probs=37.1

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~l  206 (207)
                      +|+..+. ..+..+.+..+...+++ +|+|.||+|+.+.++.+...+++++++
T Consensus       112 ~d~~~~~-~~~~~~~~~~~~~~~~p-~i~v~nK~Dl~~~~~~~~~~~~~~~~~  162 (195)
T 3pqc_A          112 VDGRIPP-QDSDLMMVEWMKSLNIP-FTIVLTKMDKVKMSERAKKLEEHRKVF  162 (195)
T ss_dssp             EETTSCC-CHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGHHHHHHHHHHHH
T ss_pred             ecCCCCC-CHHHHHHHHHHHHcCCC-EEEEEEChhcCChHHHHHHHHHHHHHH
Confidence            7777664 56666666677777764 888999999998776666666666553

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=95.28  E-value=0.042  Score=41.83  Aligned_cols=50  Identities=8%  Similarity=0.160  Sum_probs=34.4

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKF  205 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~  205 (207)
                      +|+..+. ..+..+.+..++..++ .+++|+||+|+.+.++.....+++++.
T Consensus       113 ~d~~~~~-~~~~~~~~~~~~~~~~-p~i~v~nK~Dl~~~~~~~~~~~~~~~~  162 (195)
T 1svi_A          113 VDLRHAP-SNDDVQMYEFLKYYGI-PVIVIATKADKIPKGKWDKHAKVVRQT  162 (195)
T ss_dssp             EETTSCC-CHHHHHHHHHHHHTTC-CEEEEEECGGGSCGGGHHHHHHHHHHH
T ss_pred             EECCCCC-CHHHHHHHHHHHHcCC-CEEEEEECcccCChHHHHHHHHHHHHH
Confidence            7777764 5555554555555565 489999999999877666666666653

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=95.24  E-value=0.015  Score=52.50  Aligned_cols=38  Identities=21%  Similarity=0.182  Sum_probs=33.3

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      +|+.++. ..|+.+++..+...|+ .+|+|+||+|+++.+
T Consensus       285 iD~~~~~-~~~~~~~~~~~~~~~~-~~ilv~NK~Dl~~~~  322 (456)
T 4dcu_A          285 LDGEEGI-IEQDKRIAGYAHEAGK-AVVIVVNKWDAVDKD  322 (456)
T ss_dssp             EETTTCC-CHHHHHHHHHHHHTTC-EEEEEEECGGGSCCC
T ss_pred             EeCCCCc-CHHHHHHHHHHHHcCC-CEEEEEEChhcCCCc
Confidence            8999997 8999999999988885 588999999998753

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=94.98  E-value=0.039  Score=50.30  Aligned_cols=93  Identities=17%  Similarity=0.258  Sum_probs=71.7

Q ss_pred             cccccceeeccCCCC-CCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818         11 RADRLVGQVLGAVGA-LPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV   89 (207)
Q Consensus        11 ~~d~lvG~v~g~~g~-lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~   89 (207)
                      +.|--.|.|+|.+|. -|....+++.+..+|.                                      .-.+|+.|..
T Consensus       315 ~~~i~rG~vl~~~~~~~~~~~~~f~a~v~~l~--------------------------------------~~~~i~~g~~  356 (458)
T 1f60_A          315 VKEIRRGNVCGDAKNDPPKGCASFNATVIVLN--------------------------------------HPGQISAGYS  356 (458)
T ss_dssp             TTTSCTTCEEEETTSSCCCCCSEEEEEEEECS--------------------------------------CSCCBCTTCC
T ss_pred             ccccCceeEEecCCCCCCceeeEEEEEEEEeC--------------------------------------CCCCCCCCCE
Confidence            456678999999996 7778899998887652                                      1257888999


Q ss_pred             EEEEeeccccceEEEEEe--------------------cc--eEEEEeeCcccccCCc------EEEEEEeecCcceeec
Q psy13818         90 LLVNIGSLSTGGRVLATK--------------------AD--LAKISLTNPVCTEVNE------KIALSRRVEKHWSLIE  141 (207)
Q Consensus        90 lmlniGs~~t~g~V~~~~--------------------~D--la~i~L~~Pvc~~~G~------kiaIsR~V~gh~rlig  141 (207)
                      .++.+||+...|+|..+.                    .|  .+.+.|..|+|.+.+.      |..| |+-   .+-+|
T Consensus       357 ~~~~~~t~~~~~~i~~l~~~~d~~t~~~~~~~~~~l~~g~~~~v~~~~~~p~~~~~~~~~~~~grf~l-r~~---~~tv~  432 (458)
T 1f60_A          357 PVLDCHTAHIACRFDELLEKNDRRSGKKLEDHPKFLKSGDAALVKFVPSKPMCVEAFSEYPPLGRFAV-RDM---RQTVA  432 (458)
T ss_dssp             CEEEETTEEEEEEEEEEEEEECTTTCCEEEESCSCBCTTCEEEEEEEESSCCCCCCTTTCGGGSEEEE-EET---TEEEE
T ss_pred             EEEEeccceEEEEEEEEEeEecCccccccccCccccCCCCEEEEEEEECCeEEEecCccCCCCCcEEE-EEC---CeEEE
Confidence            999999999999998773                    34  3456778999999998      7776 452   36777


Q ss_pred             -cccc
Q psy13818        142 -GTVT  145 (207)
Q Consensus       142 -g~~~  145 (207)
                       |.|.
T Consensus       433 ~G~v~  437 (458)
T 1f60_A          433 VGVIK  437 (458)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             7766

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=94.79  E-value=0.035  Score=49.81  Aligned_cols=49  Identities=22%  Similarity=0.209  Sum_probs=36.7

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhh--HHHHHHHHHh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQ--ANEQHEQIVK  204 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~--~~~~~~eI~~  204 (207)
                      +|+.++. ..|+.+++..+.-.|. .+|+|+||+|+++.++  .++..+++.+
T Consensus       265 ~D~~~~~-s~~~~~~~~~~~~~~~-~iiiv~NK~Dl~~~~~~~~~~~~~~~~~  315 (436)
T 2hjg_A          265 LDGEEGI-IEQDKRIAGYAHEAGK-AVVIVVNKWDAVDKDESTMKEFEENIRD  315 (436)
T ss_dssp             EETTTCC-CHHHHHHHHHHHHTTC-EEEEEEECGGGSCCCTTHHHHHHHHHHH
T ss_pred             EcCCcCC-cHHHHHHHHHHHHcCC-cEEEEEECccCCCcchHHHHHHHHHHHH
Confidence            8999997 8999988887777775 6999999999987543  2334444443

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=94.38  E-value=0.027  Score=53.35  Aligned_cols=92  Identities=12%  Similarity=0.120  Sum_probs=68.2

Q ss_pred             cccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceE
Q psy13818         11 RADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVL   90 (207)
Q Consensus        11 ~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~l   90 (207)
                      ..|--.|.|++.++..|+...+++.+..+|.                                      ...||..|...
T Consensus       476 ~~~i~rG~vl~~~~~~~~~~~~f~a~v~~~~--------------------------------------~~~pi~~g~~~  517 (592)
T 3mca_A          476 VNQLRPGDILSNYENPVRRVRSFVAEIQTFD--------------------------------------IHGPILSGSTL  517 (592)
T ss_dssp             GGGCCTTCEEECSSSCCEEESEEEEEEEECS--------------------------------------CSSCEETTEEE
T ss_pred             ccccceEEEeccCCCCccccCeEEEEEEEEC--------------------------------------CCccCCCCCEE
Confidence            3455579999999998888888887775541                                      13578999999


Q ss_pred             EEEeeccccceEEEEEe------------cceEEEEee---Ccccc------cCCcEEEEEEeecCcceeec-cccc
Q psy13818         91 LVNIGSLSTGGRVLATK------------ADLAKISLT---NPVCT------EVNEKIALSRRVEKHWSLIE-GTVT  145 (207)
Q Consensus        91 mlniGs~~t~g~V~~~~------------~Dla~i~L~---~Pvc~------~~G~kiaIsR~V~gh~rlig-g~~~  145 (207)
                      ++.+||+.+.|+| .+.            .|.+.+.|.   .|+|.      ..|.|..| |+ .+  +-|| |.|.
T Consensus       518 ~l~~~t~~~~~~i-~l~~~~~~~~~~l~~gd~~~v~l~fl~~p~~~e~~~~~~~~~rfil-r~-~~--~Tv~~G~i~  589 (592)
T 3mca_A          518 VLHLGRTVTSVSL-KIVTVNNKRSRHIASRKRALVRISFLDGLFPLCLAEECPALGRFIL-RR-SG--DTVAAGIVK  589 (592)
T ss_dssp             EEECSSCEEEEEE-EEEESSSSCCSEECSSCEEEEEEEESSSCEEECCTTTCHHHHEEEE-ES-SS--SEEEEEEEE
T ss_pred             EEEEcCcEEEEEE-EEEeccccchhccCCCCEEEEEEEECCCcEEEEeccCCCCCCeEEE-EE-CC--cEEEEEEEE
Confidence            9999999999999 764            356666554   89999      78888877 54 23  3555 6553

>3e1y_E Eukaryotic peptide chain release factor GTP-bindi ERF3A; translation termination, peptide release, PTC, P biosynthesis, GTP-binding; HET: ATP; 3.80A {Homo sapiens}

Probab=93.48  E-value=0.13  Score=42.23  Aligned_cols=77  Identities=12%  Similarity=0.116  Sum_probs=58.2

Q ss_pred             ccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818         10 CRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV   89 (207)
Q Consensus        10 ~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~   89 (207)
                      .+.|--.|.|++.+++.|+...+++.+..+|..                                      -.+|+.|..
T Consensus        75 ~~~di~rG~vl~~~~~~~~~~~~f~a~v~~l~~--------------------------------------~~~i~~g~~  116 (204)
T 3e1y_E           75 EEEEILPGFILCDPNNLCHSGRTFDAQIVIIEH--------------------------------------KSIICPGYN  116 (204)
T ss_dssp             SSSCCCTTCEEBCSSSCCCCCSEEEEEEECCSC--------------------------------------CSCCCTTEE
T ss_pred             CHHHCccceEEECCCCCCchhEEEEEEEEEeCC--------------------------------------CCccCCCce
Confidence            345666799999999999999999999876621                                      136778888


Q ss_pred             EEEEeeccccceEEEEEe--------------------cce--EEEEeeCcccccCC
Q psy13818         90 LLVNIGSLSTGGRVLATK--------------------ADL--AKISLTNPVCTEVN  124 (207)
Q Consensus        90 lmlniGs~~t~g~V~~~~--------------------~Dl--a~i~L~~Pvc~~~G  124 (207)
                      .++.+||+.+.|+|..+.                    .|.  +.+.+..|+|.+..
T Consensus       117 ~~l~~~t~~~~~~i~~i~~~id~~tg~~~~~~~~~l~~gd~a~v~l~~~~pi~~e~~  173 (204)
T 3e1y_E          117 AVLHIHTCIEEVEITALICLVDKKSGEKSKTRPRFVKQDQVCIARLRTAGTICLETF  173 (204)
T ss_dssp             EEEESSSCEEEEEEEEECCCCCSSTTCCCSSCCSCCCTTCEEEEEEEESSCCCCCCT
T ss_pred             EEEEEeCCEEEEEEEEEEEEEcCCCCCEeccCCcCcCCCCEEEEEEEECCeEEEEEc
Confidence            888888888888887652                    233  35677889999875

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=93.30  E-value=0.2  Score=42.83  Aligned_cols=46  Identities=20%  Similarity=0.247  Sum_probs=30.8

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC-hhhHHHHHHHH
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK-EGQANEQHEQI  202 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~-~~~~~~~~~eI  202 (207)
                      +|+.+ . .+|+++-+..+...+.+ .|+++||+|+.+ .+...+..+++
T Consensus        96 vd~~~-~-~~~~~~i~~~l~~~~~P-~ilvlNK~D~~~~~~~~~~~l~~l  142 (301)
T 1ega_A           96 VEGTR-W-TPDDEMVLNKLREGKAP-VILAVNKVDNVQEKADLLPHLQFL  142 (301)
T ss_dssp             EETTC-C-CHHHHHHHHHHHSSSSC-EEEEEESTTTCCCHHHHHHHHHHH
T ss_pred             EeCCC-C-CHHHHHHHHHHHhcCCC-EEEEEECcccCccHHHHHHHHHHH
Confidence            77777 4 89998776666655665 667789999987 33333333333

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=93.10  E-value=0.12  Score=38.77  Aligned_cols=64  Identities=16%  Similarity=0.070  Sum_probs=38.8

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHH----c----CCCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEI----M----KLKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~----l----GI~~iIV~vNK~DlV~~  192 (207)
                      ++.|. +.+|+.+|-. +... ++. +++.  +|++++. .++..+.+.-+..    +    .-..+|+|.||+|+.+.
T Consensus        75 ~~~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~D~~~~~-~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~  150 (198)
T 3t1o_A           75 RFHLY-TVPGQVFYNASRKLILRGV-DGIVFVADSAPNR-LRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA  150 (198)
T ss_dssp             EEEEE-ECCSCCSCSHHHHHHTTTC-CEEEEEEECCGGG-HHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred             EEEEE-eCCChHHHHHHHHHHHhcC-CEEEEEEECCcch-hhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc
Confidence            45555 8899888764 3322 332 3433  7777654 5566655543322    1    33458899999999764

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=92.65  E-value=0.11  Score=40.36  Aligned_cols=77  Identities=18%  Similarity=0.126  Sum_probs=41.7

Q ss_pred             CcEEEEEEeecCcceeeccccccccccce---e--eecCCCCCCCchHHHHHHHHH------c-C-CCeEEEEEecCCCC
Q psy13818        124 NEKIALSRRVEKHWSLIEGTVTTKVLSTR---K--RTGNESCPQPQTSEHLAAIEI------M-K-LKHIIILQNKIDLV  190 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg~~~~nMiaGa---~--V~A~eg~~~pQT~EHl~il~~------l-G-I~~iIV~vNK~DlV  190 (207)
                      +.++.|. +.+|+.+|-.. +.+..+.++   .  +|+...  ..+..+....+..      + . -..+++|.||+|+.
T Consensus        53 ~~~~~i~-Dt~G~~~~~~~-~~~~~~~~~~~~i~v~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~  128 (214)
T 2fh5_B           53 GNSLTLI-DLPGHESLRFQ-LLDRFKSSARAVVFVVDSAAF--QREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIA  128 (214)
T ss_dssp             CCEEEEE-ECCCCHHHHHH-HHHHHGGGEEEEEEEEETTTH--HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTST
T ss_pred             ccEEEEE-ECCCChhHHHH-HHHHHHhhCCEEEEEEECCCc--CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCC
Confidence            3467776 99999887620 001112222   2  666541  2334444332221      1 1 24689999999998


Q ss_pred             ChhhHHHHHHHHHh
Q psy13818        191 KEGQANEQHEQIVK  204 (207)
Q Consensus       191 ~~~~~~~~~~eI~~  204 (207)
                      +....++..+++.+
T Consensus       129 ~~~~~~~~~~~l~~  142 (214)
T 2fh5_B          129 MAKSAKLIQQQLEK  142 (214)
T ss_dssp             TCCCHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHH
Confidence            76544445555443

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=92.57  E-value=0.57  Score=34.30  Aligned_cols=68  Identities=13%  Similarity=0.067  Sum_probs=36.4

Q ss_pred             CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-HHHHH--cCCCeEEEEEecCCCCChh
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEI--MKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~--lGI~~iIV~vNK~DlV~~~  193 (207)
                      +.++.+. +.+|+.++-. +.-. ++ .+++.  +|+++........+.+ .+++.  ..-..++++.||+|+.+..
T Consensus        50 ~~~~~~~-Dt~G~~~~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  124 (171)
T 1upt_A           50 NLKFQVW-DLGGLTSIRPYWRCYYSN-TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM  124 (171)
T ss_dssp             TEEEEEE-EECCCGGGGGGGGGGCTT-CSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             CEEEEEE-ECCCChhhhHHHHHHhcc-CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC
Confidence            4466766 8898877653 2222 22 23333  7776653112222222 12221  1234689999999998753

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=92.36  E-value=0.35  Score=36.65  Aligned_cols=69  Identities=4%  Similarity=-0.018  Sum_probs=37.3

Q ss_pred             CCcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHH-HHHH--c-------CCCeEEEEEecCC
Q psy13818        123 VNEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA-AIEI--M-------KLKHIIILQNKID  188 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~-il~~--l-------GI~~iIV~vNK~D  188 (207)
                      .+.++.|. +.+|+.++-. +... ++. +++.  +|+++.....+..+.+. +++.  +       .-..+|||.||+|
T Consensus        61 ~~~~~~i~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~D  138 (199)
T 4bas_A           61 GRVAFTVF-DMGGAKKFRGLWETYYDNI-DAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMD  138 (199)
T ss_dssp             TTEEEEEE-EECCSGGGGGGGGGGCTTC-SEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTT
T ss_pred             CCEEEEEE-ECCCCHhHHHHHHHHHhcC-CEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcC
Confidence            34567776 9999988764 3222 322 3333  77765421112222222 2221  1       1335899999999


Q ss_pred             CCChh
Q psy13818        189 LVKEG  193 (207)
Q Consensus       189 lV~~~  193 (207)
                      +.+..
T Consensus       139 l~~~~  143 (199)
T 4bas_A          139 AAGAK  143 (199)
T ss_dssp             STTCC
T ss_pred             CCCCC
Confidence            98763

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=92.29  E-value=0.097  Score=47.77  Aligned_cols=94  Identities=19%  Similarity=0.195  Sum_probs=62.7

Q ss_pred             ccccccceeeccCCCCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818         10 CRADRLVGQVLGAVGALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV   89 (207)
Q Consensus        10 ~~~d~lvG~v~g~~g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~   89 (207)
                      .+.|--.|.|++.++..|++..+++.+..+|.+                                      -.+|..|..
T Consensus       342 ~~~~i~rG~vl~~~~~~~~~~~~f~a~v~~l~~--------------------------------------~~~~~~g~~  383 (467)
T 1r5b_A          342 DDSDVQTGYVLTSTKNPVHATTRFIAQIAILEL--------------------------------------PSILTTGYS  383 (467)
T ss_dssp             CCTTCCTTCEEECSSSCCCEEEEEEEEEEECSS--------------------------------------CCCBSSCCC
T ss_pred             cHhhCCceEEEeCCCCCCccceEEEEEEEEeCC--------------------------------------CCccCCCCE
Confidence            355667899999999999999999999877632                                      123455555


Q ss_pred             EEEEeeccccceEEEEEe-------------------cc--eEEEEeeCcccccCCc------EEEEEEeecCcceeec-
Q psy13818         90 LLVNIGSLSTGGRVLATK-------------------AD--LAKISLTNPVCTEVNE------KIALSRRVEKHWSLIE-  141 (207)
Q Consensus        90 lmlniGs~~t~g~V~~~~-------------------~D--la~i~L~~Pvc~~~G~------kiaIsR~V~gh~rlig-  141 (207)
                      .++.++|....++|..+.                   .|  .+.+.|..|+|.+.+.      |..| |+- +  +-+| 
T Consensus       384 ~~~~~~t~~~~~~~~~i~~~~d~~~~~~~~~~~~l~~g~~~~v~l~~~~p~~~~~~~~~~~~grf~l-rd~-~--~Tv~~  459 (467)
T 1r5b_A          384 CVMHIHTAVEEVSFAKLLHKLDKTNRKSKKPPMFATKGMKIIAELETQTPVCMERFEDYQYMGRFTL-RDQ-G--TTVAV  459 (467)
T ss_dssp             BEEESSSCCCCBEESSCCCCCCSSCCCCSSCCSBCCTTCBCCEEEEEEEEEECCCTTTCHHHHEEEE-ECS-S--SCEEE
T ss_pred             EEEEEeCCEEEEEEEEEEEEecCCccccccCccccCCCCEEEEEEEECcEEEEEEcCcCCCCccEEE-EEC-C--eEEEE
Confidence            555555555555554321                   12  3477889999999995      6655 553 2  5776 


Q ss_pred             cccc
Q psy13818        142 GTVT  145 (207)
Q Consensus       142 g~~~  145 (207)
                      |.|.
T Consensus       460 G~i~  463 (467)
T 1r5b_A          460 GKVV  463 (467)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6664

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=91.91  E-value=0.11  Score=48.69  Aligned_cols=49  Identities=18%  Similarity=0.127  Sum_probs=36.2

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHH
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIV  203 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~  203 (207)
                      +|++.....++..+++..++..+. .+++|+||+|+++.++..+.+.++.
T Consensus       196 vDa~~~~~~~~~~~~l~~l~~~~~-pvilVlNK~Dl~~~~el~~~~~~l~  244 (550)
T 2qpt_A          196 FDAHKLEISDEFSEAIGALRGHED-KIRVVLNKADMVETQQLMRVYGALM  244 (550)
T ss_dssp             EETTSCCCCHHHHHHHHHTTTCGG-GEEEEEECGGGSCHHHHHHHHHHHH
T ss_pred             EeCCcCCCCHHHHHHHHHHHhcCC-CEEEEEECCCccCHHHHHHHHHHhh
Confidence            888773237788887777666555 4899999999999877766666554

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=91.86  E-value=0.074  Score=39.70  Aligned_cols=65  Identities=8%  Similarity=0.033  Sum_probs=35.6

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~~  192 (207)
                      ++.|. +.+|+.++-. +... ++. +++.  +|+++.....+..+.+..+....  -..+++|.||+|+.+.
T Consensus        62 ~~~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~  132 (181)
T 2efe_B           62 KFEIW-DTAGQERYHSLAPMYYRGA-AAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDA  132 (181)
T ss_dssp             EEEEE-ECCCSGGGGGGTHHHHTTC-SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred             EEEEE-eCCCChhhhhhhHHHhccC-CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence            55555 8888887763 2222 222 3333  67665421123334444444333  2348999999999764

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=91.79  E-value=0.3  Score=36.59  Aligned_cols=31  Identities=23%  Similarity=0.323  Sum_probs=23.5

Q ss_pred             CCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        162 QPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       162 ~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      .+|..+.+..+...+++ +++|.||+|+.+..
T Consensus       108 ~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~  138 (190)
T 2cxx_A          108 IPIDVEFYQFLRELDIP-TIVAVNKLDKIKNV  138 (190)
T ss_dssp             CCHHHHHHHHHHHTTCC-EEEEEECGGGCSCH
T ss_pred             cHHHHHHHHHHHhcCCc-eEEEeehHhccCcH
Confidence            56666666666666766 89999999998754

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=91.79  E-value=0.11  Score=44.43  Aligned_cols=37  Identities=27%  Similarity=0.256  Sum_probs=28.9

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQ  194 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~  194 (207)
                      +||..    |++.+|..+.++++-+..++++||+||++.+.
T Consensus        31 vDAr~----p~~~~~~~l~~~l~~kp~ilVlNK~DL~~~~~   67 (282)
T 1puj_A           31 VDARI----PMSSRNPMIEDILKNKPRIMLLNKADKADAAV   67 (282)
T ss_dssp             EETTS----TTTTSCHHHHHHCSSSCEEEEEECGGGSCHHH
T ss_pred             EeCCC----CCccCCHHHHHHHCCCCEEEEEECcccCCHHH
Confidence            77765    44555567778889999999999999998654

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=91.62  E-value=0.25  Score=45.08  Aligned_cols=64  Identities=17%  Similarity=0.260  Sum_probs=46.3

Q ss_pred             EEEEEEeecCcceeec-ccc----cccc---cccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhh
Q psy13818        126 KIALSRRVEKHWSLIE-GTV----TTKV---LSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQ  194 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~----~~nM---iaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~  194 (207)
                      ++.+. +.+||.++-. +..    ++..   .+++.  +|+  +. ++|+.+.+..++..+++ +|+|+||+|+.+.+.
T Consensus        84 ~l~li-DTpG~~d~~~l~~~~~~~~~~~l~~aD~vllVvD~--~~-~~~~~~~l~~l~~~~~p-iIvV~NK~Dl~~~~~  157 (423)
T 3qq5_A           84 PVTLV-DTPGLDDVGELGRLRVEKARRVFYRADCGILVTDS--AP-TPYEDDVVNLFKEMEIP-FVVVVNKIDVLGEKA  157 (423)
T ss_dssp             EEEEE-ECSSTTCCCTTCCCCHHHHHHHHTSCSEEEEECSS--SC-CHHHHHHHHHHHHTTCC-EEEECCCCTTTTCCC
T ss_pred             eEEEE-ECcCCCcccchhHHHHHHHHHHHhcCCEEEEEEeC--CC-hHHHHHHHHHHHhcCCC-EEEEEeCcCCCCccH
Confidence            67776 9999988743 222    0112   34444  666  54 89999999999999876 889999999987653

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=91.62  E-value=0.27  Score=42.24  Aligned_cols=68  Identities=13%  Similarity=0.094  Sum_probs=40.1

Q ss_pred             CCcEEEEEEeecCccee--------ec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc--CCCeEEEEEecCC
Q psy13818        123 VNEKIALSRRVEKHWSL--------IE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM--KLKHIIILQNKID  188 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rl--------ig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l--GI~~iIV~vNK~D  188 (207)
                      .+.++.+. +.||..+.        .. ..-+ ++ .+++.  +|++++. .+++.+-+..++..  ++ .+|+|+||+|
T Consensus        53 ~~~~l~l~-DTpG~~~~~~~l~~~~~~~~~~~l~~-ad~il~VvD~~~~~-~~~~~~i~~~l~~~~~~~-p~ilV~NK~D  128 (301)
T 1wf3_A           53 GRRQIVFV-DTPGLHKPMDALGEFMDQEVYEALAD-VNAVVWVVDLRHPP-TPEDELVARALKPLVGKV-PILLVGNKLD  128 (301)
T ss_dssp             TTEEEEEE-ECCCCCCCCSHHHHHHHHHHHHHTSS-CSEEEEEEETTSCC-CHHHHHHHHHHGGGTTTS-CEEEEEECGG
T ss_pred             CCcEEEEe-cCccccchhhHHHHHHHHHHHHHHhc-CCEEEEEEECCCCC-ChHHHHHHHHHHhhcCCC-CEEEEEECcc
Confidence            34566666 88886652        21 0000 21 23333  8888875 66765554455544  44 4889999999


Q ss_pred             CCChhh
Q psy13818        189 LVKEGQ  194 (207)
Q Consensus       189 lV~~~~  194 (207)
                      +.+.+.
T Consensus       129 l~~~~~  134 (301)
T 1wf3_A          129 AAKYPE  134 (301)
T ss_dssp             GCSSHH
T ss_pred             cCCchH
Confidence            987654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=91.50  E-value=0.68  Score=34.99  Aligned_cols=67  Identities=16%  Similarity=0.125  Sum_probs=36.6

Q ss_pred             CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-HHHHH--cCCCeEEEEEecCCCCCh
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEI--MKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~--lGI~~iIV~vNK~DlV~~  192 (207)
                      +.++.+. +.+|+.++-. +.-. ++. +++.  +|+++.....+..+.+ .+++.  ..-..+|+|.||+|+.+.
T Consensus        64 ~~~~~i~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  137 (181)
T 2h17_A           64 NTRFLMW-DIGGQESLRSSWNTYYTNT-EFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC  137 (181)
T ss_dssp             TEEEEEE-EESSSGGGTCGGGGGGTTC-CEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred             CEEEEEE-ECCCCHhHHHHHHHHhccC-CEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccC
Confidence            4566665 8888877653 2222 222 3333  7776653122223322 22222  233568999999999874

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=91.45  E-value=1.2  Score=38.92  Aligned_cols=39  Identities=18%  Similarity=0.249  Sum_probs=22.7

Q ss_pred             eecCCCCCCCc-hHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        154 RTGNESCPQPQ-TSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       154 V~A~eg~~~pQ-T~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      +|+.++.+.+. --+.+.++...|++ .|+|+||+||++++
T Consensus        94 ~~~~~p~~~~~~i~r~L~~~~~~~~~-~vivlnK~DL~~~~  133 (307)
T 1t9h_A           94 FSAVQPSFSTALLDRFLVLVEANDIQ-PIICITKMDLIEDQ  133 (307)
T ss_dssp             EESTTTTCCHHHHHHHHHHHHTTTCE-EEEEEECGGGCCCH
T ss_pred             EeCCCCCCCHHHHHHHHHHHHHCCCC-EEEEEECCccCchh
Confidence            56665542221 12222333445665 68899999999874

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=91.34  E-value=0.058  Score=40.19  Aligned_cols=65  Identities=8%  Similarity=-0.060  Sum_probs=35.4

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc-----CCCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM-----KLKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l-----GI~~iIV~vNK~DlV~~  192 (207)
                      ++.+. +.+|+.++.. +... ++. +++.  +|+++.....+..+.+..+...     +.+.+++|.||+|+.+.
T Consensus        57 ~~~~~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~  130 (178)
T 2hxs_A           57 TLQIW-DIGGQTIGGKMLDKYIYGA-QGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM  130 (178)
T ss_dssp             EEEEE-ECTTCCTTCTTHHHHHTTC-SEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG
T ss_pred             EEEEE-ECCCCccccchhhHHHhhC-CEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccc
Confidence            45554 8888877653 2222 332 3333  6666532111222333333332     67779999999999753

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=91.18  E-value=0.53  Score=35.10  Aligned_cols=67  Identities=12%  Similarity=0.065  Sum_probs=32.7

Q ss_pred             CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHH-H--cCCCeEEEEEecCCCCCh
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIE-I--MKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~-~--lGI~~iIV~vNK~DlV~~  192 (207)
                      +.++.+. +.+|+.++-. +.-. ++. +++.  +|+++.....+..+++.-+. .  ..-..++++.||+|+.+.
T Consensus        61 ~~~~~i~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  134 (183)
T 1moz_A           61 NLKLNVW-DLGGQTSIRPYWRCYYADT-AAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA  134 (183)
T ss_dssp             TEEEEEE-EEC----CCTTGGGTTTTE-EEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred             CEEEEEE-ECCCCHhHHHHHHHHhccC-CEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCC
Confidence            4566665 8898887653 2222 221 2322  77665431233333332221 1  133468999999999864

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=91.05  E-value=0.46  Score=34.48  Aligned_cols=66  Identities=14%  Similarity=0.070  Sum_probs=39.7

Q ss_pred             CcEEEEEEeecCcceee---c-----ccccccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCCh
Q psy13818        124 NEKIALSRRVEKHWSLI---E-----GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       124 G~kiaIsR~V~gh~rli---g-----g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      +.++.+. +.+|+.++-   .     +.-.-.-.+++.  +|+.++. ..+..+....++..+++ ++++.||+|+.+.
T Consensus        48 ~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~-~~~~~~~~~~~~~~~~p-~ilv~nK~Dl~~~  123 (161)
T 2dyk_A           48 RGRFLLV-DTGGLWSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAEL-TQADYEVAEYLRRKGKP-VILVATKVDDPKH  123 (161)
T ss_dssp             TEEEEEE-ECGGGCSSSSCCHHHHHHHHHHTTTCSEEEEEEESSSCC-CHHHHHHHHHHHHHTCC-EEEEEECCCSGGG
T ss_pred             CceEEEE-ECCCCCCccchHHHHHHHHHHHHHhCCEEEEEEECCCcc-cHhHHHHHHHHHhcCCC-EEEEEECcccccc
Confidence            4456665 888877631   0     000001112333  7787764 55556666667666765 8999999999765

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=91.01  E-value=0.66  Score=35.14  Aligned_cols=67  Identities=16%  Similarity=0.119  Sum_probs=33.9

Q ss_pred             CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-HHHHH--cCCCeEEEEEecCCCCCh
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEI--MKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~--lGI~~iIV~vNK~DlV~~  192 (207)
                      +.++.+. +.+|+.++-. +... ++ .+++.  +|+++.....+..+.+ .+++.  ..-..+|+|.||+|+.+.
T Consensus        59 ~~~~~i~-Dt~G~~~~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  132 (187)
T 1zj6_A           59 NTRFLMW-DIGGQESLRSSWNTYYTN-TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKEC  132 (187)
T ss_dssp             TEEEEEE-ECCC----CGGGHHHHTT-CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTC
T ss_pred             CEEEEEE-ECCCCHhHHHHHHHHhcC-CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCC
Confidence            4566665 8888877763 2222 33 23333  7776653122223322 22222  133568999999999864

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=90.73  E-value=1.9  Score=38.75  Aligned_cols=24  Identities=29%  Similarity=0.537  Sum_probs=18.0

Q ss_pred             HHHHHcCCCeEEEEEecCCCCChhh
Q psy13818        170 AAIEIMKLKHIIILQNKIDLVKEGQ  194 (207)
Q Consensus       170 ~il~~lGI~~iIV~vNK~DlV~~~~  194 (207)
                      .++...|++- |+|+||+||++++.
T Consensus       154 ~~a~~~~~~~-iivlNK~DL~~~~~  177 (358)
T 2rcn_A          154 VGCETLQVEP-LIVLNKIDLLDDEG  177 (358)
T ss_dssp             HHHHHHTCEE-EEEEECGGGCCHHH
T ss_pred             HHHHhcCCCE-EEEEECccCCCchh
Confidence            3445568764 89999999998753

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=90.67  E-value=0.54  Score=35.40  Aligned_cols=68  Identities=15%  Similarity=0.026  Sum_probs=36.6

Q ss_pred             CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-HHHHH--cCCCeEEEEEecCCCCChh
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEI--MKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~--lGI~~iIV~vNK~DlV~~~  193 (207)
                      +.++.+. +.+|+.++-. +.-. ++ .+++.  +|+++.....+..+.+ .+++.  ..-..+|+|.||+|+.+..
T Consensus        61 ~~~~~~~-Dt~G~~~~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  135 (186)
T 1ksh_A           61 GFKLNIW-DVGGQKSLRSYWRNYFES-TDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL  135 (186)
T ss_dssp             TEEEEEE-EECCSHHHHTTGGGGCTT-CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             CEEEEEE-ECCCCHhHHHHHHHHhcC-CCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC
Confidence            4567776 9999887653 2222 22 23333  6766542112222222 22222  1235689999999998753

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=90.67  E-value=0.55  Score=35.69  Aligned_cols=67  Identities=9%  Similarity=-0.005  Sum_probs=36.3

Q ss_pred             CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHH-HHHHHHc----CCCeEEEEEecCCCCCh
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEH-LAAIEIM----KLKHIIILQNKIDLVKE  192 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EH-l~il~~l----GI~~iIV~vNK~DlV~~  192 (207)
                      +.++.|. +.+|+.++-. +... ++. +++.  +|+++.....+..+. ..+++..    .-..+|+|.||+|+.+.
T Consensus        66 ~~~~~l~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  141 (190)
T 2h57_A           66 SLSFTVF-DMSGQGRYRNLWEHYYKEG-QAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDA  141 (190)
T ss_dssp             SCEEEEE-EECCSTTTGGGGGGGGGGC-SEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTC
T ss_pred             CEEEEEE-ECCCCHHHHHHHHHHHhcC-CEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccC
Confidence            4567776 8998877653 2222 222 3333  676653201222222 2333332    22468999999999865

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=90.59  E-value=0.41  Score=36.52  Aligned_cols=60  Identities=12%  Similarity=0.145  Sum_probs=33.9

Q ss_pred             EEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-----HHH-HHcCCCeEEEEEecCCCCCh
Q psy13818        127 IALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-----AAI-EIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       127 iaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-----~il-~~lGI~~iIV~vNK~DlV~~  192 (207)
                      +.|. +.+|+.++-. +... ++. +++.  +|+++.    ++.+++     ..+ +...-..+|+|.||+|+.++
T Consensus        73 ~~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  142 (194)
T 3reg_A           73 LHLW-DTAGQEEYDRLRPLSYADS-DVVLLCFAVNNR----TSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD  142 (194)
T ss_dssp             EEEE-EECCSGGGTTTGGGGCTTC-SEEEEEEETTCH----HHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCT
T ss_pred             EEEE-ECCCcHHHHHHhHhhccCC-cEEEEEEECCCH----HHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence            4555 8888888764 3222 332 3333  565543    444432     222 23333568999999999763

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=90.57  E-value=0.4  Score=37.26  Aligned_cols=70  Identities=17%  Similarity=0.100  Sum_probs=38.1

Q ss_pred             CcEEEEEEeecCcceeec-cccc-ccc---cccee--eecC-CCCCCCchHHHHH-HHHHc-----CCCeEEEEEecCCC
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVT-TKV---LSTRK--RTGN-ESCPQPQTSEHLA-AIEIM-----KLKHIIILQNKIDL  189 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~-~nM---iaGa~--V~A~-eg~~~pQT~EHl~-il~~l-----GI~~iIV~vNK~Dl  189 (207)
                      +.++.+. +.+|+.++-. +.-. ++.   ..++.  +|+. ......+..+++. +++..     .-..++++.||+|+
T Consensus        54 ~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl  132 (218)
T 1nrj_B           54 GSGVTLV-DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL  132 (218)
T ss_dssp             GSSCEEE-ECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred             CceEEEE-ECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence            3456776 9999888753 2222 332   23333  7776 2222344444432 22221     12348999999999


Q ss_pred             CChhh
Q psy13818        190 VKEGQ  194 (207)
Q Consensus       190 V~~~~  194 (207)
                      .+...
T Consensus       133 ~~~~~  137 (218)
T 1nrj_B          133 FTARP  137 (218)
T ss_dssp             TTCCC
T ss_pred             cccCC
Confidence            88653

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=90.47  E-value=0.26  Score=40.99  Aligned_cols=49  Identities=20%  Similarity=0.211  Sum_probs=32.1

Q ss_pred             eecC-CCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhh
Q psy13818        154 RTGN-ESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKF  205 (207)
Q Consensus       154 V~A~-eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~  205 (207)
                      |+.. .+. .++..+.+..+..  -..+|+|+||+|+.+.++.....++|.+.
T Consensus       123 i~~~~~~~-~~~d~~~l~~l~~--~~pvi~V~nK~D~~~~~e~~~~~~~i~~~  172 (274)
T 3t5d_A          123 IAPSGHGL-KPLDIEFMKRLHE--KVNIIPLIAKADTLTPEECQQFKKQIMKE  172 (274)
T ss_dssp             ECSCCSSC-CHHHHHHHHHHTT--TSCEEEEESSGGGSCHHHHHHHHHHHHHH
T ss_pred             ecCCCCCC-CHHHHHHHHHHhc--cCCEEEEEeccCCCCHHHHHHHHHHHHHH
Confidence            4333 453 6666665555444  45699999999999877666555556554

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=90.43  E-value=0.96  Score=34.77  Aligned_cols=65  Identities=5%  Similarity=0.030  Sum_probs=38.4

Q ss_pred             cEEEEEEeecCcceeec--c--ccc-ccccccee--eecCCCCCCCchHHHH-HHHHH----cCCCeEEEEEecCCCCCh
Q psy13818        125 EKIALSRRVEKHWSLIE--G--TVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEI----MKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       125 ~kiaIsR~V~gh~rlig--g--~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~----lGI~~iIV~vNK~DlV~~  192 (207)
                      .++.|. +.+|+++|..  |  ... ++ ..++.  +|+++..  .++.+++ ..+..    ..=..+++|.||+|++++
T Consensus        69 ~~l~i~-Dt~G~~~~~~~~~~~~~~~~~-~~~~i~v~d~~~~~--~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~  144 (196)
T 3llu_A           69 VNFQIW-DFPGQMDFFDPTFDYEMIFRG-TGALIYVIDAQDDY--MEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD  144 (196)
T ss_dssp             CCEEEE-ECCSSCCTTCTTCCHHHHHHT-CSEEEEEEETTSCC--HHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred             eEEEEE-ECCCCHHHHhhhhhccccccc-CCEEEEEEECCCch--HHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence            356665 8899988763  2  122 33 24433  7777652  3454443 22232    233468899999999986


Q ss_pred             h
Q psy13818        193 G  193 (207)
Q Consensus       193 ~  193 (207)
                      +
T Consensus       145 ~  145 (196)
T 3llu_A          145 D  145 (196)
T ss_dssp             H
T ss_pred             h
Confidence            5

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=90.42  E-value=0.93  Score=34.24  Aligned_cols=68  Identities=10%  Similarity=0.044  Sum_probs=35.9

Q ss_pred             CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHH-HHHHc--CCCeEEEEEecCCCCChh
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA-AIEIM--KLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~-il~~l--GI~~iIV~vNK~DlV~~~  193 (207)
                      +.++.+. +.+|+.++-. +.-. ++. +++.  +|+++........+.+. +++..  .-..+++|.||+|+.+..
T Consensus        65 ~~~~~~~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  139 (189)
T 2x77_A           65 NISFEVW-DLGGQTGVRPYWRCYFSDT-DAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA  139 (189)
T ss_dssp             TEEEEEE-EECCSSSSCCCCSSSSTTC-CEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC
T ss_pred             CEEEEEE-ECCCCHhHHHHHHHHhhcC-CEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC
Confidence            4466665 8898877653 2222 222 3333  77765431122222221 22211  124589999999998753

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=90.37  E-value=0.12  Score=39.78  Aligned_cols=65  Identities=9%  Similarity=-0.051  Sum_probs=35.7

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~~  192 (207)
                      ++.|. +.+|+.++-. +... ++. +++.  +|+++.....+..+.+..+....  -..+++|.||+|+.+.
T Consensus        73 ~~~i~-Dt~G~~~~~~~~~~~~~~~-d~iilV~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~  143 (192)
T 2fg5_A           73 KFLIW-DTAGQERFHSLAPMYYRGS-AAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDI  143 (192)
T ss_dssp             EEEEE-EECCSGGGGGGTHHHHTTC-SEEEEEEETTCTHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred             EEEEE-cCCCchhhHhhhHHhhccC-CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence            56665 8899887763 2222 322 3333  66655321122233344444432  3468999999999753

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=89.95  E-value=0.19  Score=38.31  Aligned_cols=65  Identities=14%  Similarity=0.052  Sum_probs=35.5

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM--KLKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l--GI~~iIV~vNK~DlV~~  192 (207)
                      ++.|. +.+|+.++-. +... ++. +++.  +|+++.....+..+.+..+...  .-..+++|.||+|+.+.
T Consensus        72 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  142 (189)
T 2gf9_A           72 KLQIW-DTAGQERYRTITTAYYRGA-MGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE  142 (189)
T ss_dssp             EEEEE-ECCSCCSSCCSGGGGGTTC-SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred             EEEEE-eCCCcHHHhhhHHHhccCC-CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence            45554 8888877753 2222 222 3333  6665532122333444444443  23468999999999764

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=89.34  E-value=0.27  Score=47.31  Aligned_cols=64  Identities=16%  Similarity=0.134  Sum_probs=36.1

Q ss_pred             EEEEEEeecCcceeec-cccccccccce---e--eecCCCCCCCchHHHHH-HHHHcCCCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVTTKVLSTR---K--RTGNESCPQPQTSEHLA-AIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~~nMiaGa---~--V~A~eg~~~pQT~EHl~-il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      .+.|+ +.||.-+.-. ...+.+.+..+   .  +|++.+. .++..+.+. .+.-.+.+ +++|+||+|+.+.
T Consensus       175 ~l~Li-DTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~-s~~e~~~l~~~l~~~~~~-iiiVlNK~Dl~~~  245 (695)
T 2j69_A          175 GIEIV-DSPGLNDTEARNELSLGYVNNCHAILFVMRASQPC-TLGERRYLENYIKGRGLT-VFFLVNAWDQVRE  245 (695)
T ss_dssp             TEEEE-ECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTT-CHHHHHHHHHHTTTSCCC-EEEEEECGGGGGG
T ss_pred             CeEEE-ECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCcc-chhHHHHHHHHHHhhCCC-EEEEEECcccccc
Confidence            47776 8888543211 01113333332   2  7777765 455554432 33334665 9999999999764

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=88.84  E-value=0.16  Score=37.13  Aligned_cols=65  Identities=9%  Similarity=-0.032  Sum_probs=34.6

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCC--eEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLK--HIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~--~iIV~vNK~DlV~~  192 (207)
                      ++.+. +.+|+.++-. +... ++. +++.  +|+++.....+..+.+..+...+.+  -++++.||+|+.+.
T Consensus        56 ~~~~~-Dt~G~~~~~~~~~~~~~~~-~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~  126 (170)
T 1z0j_A           56 KFLIW-DTAGLERFRALAPMYYRGS-AAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV  126 (170)
T ss_dssp             EEEEE-EECCSGGGGGGTHHHHTTC-SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred             EEEEE-cCCCchhhhcccHhhCcCC-CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc
Confidence            45554 8888877653 2111 222 3333  6666542112223334444444433  47788899999764

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=88.70  E-value=1.1  Score=36.30  Aligned_cols=68  Identities=16%  Similarity=0.128  Sum_probs=39.4

Q ss_pred             cCCcEEEEEEeecCcceeec--ccc----cc------cccccee--eecCCCCCCCchHHHHHHHH-HcC---CCeEEEE
Q psy13818        122 EVNEKIALSRRVEKHWSLIE--GTV----TT------KVLSTRK--RTGNESCPQPQTSEHLAAIE-IMK---LKHIIIL  183 (207)
Q Consensus       122 ~~G~kiaIsR~V~gh~rlig--g~~----~~------nMiaGa~--V~A~eg~~~pQT~EHl~il~-~lG---I~~iIV~  183 (207)
                      +.|.++.|. +.||++++-+  ...    .+      .-..++.  +|+.. . .+|..+.+..+. .++   -...|++
T Consensus        68 ~~~~~i~ii-DTpG~~~~~~~~~~~~~~i~~~~~~~~~~~d~il~V~d~~~-~-~~~~~~~~~~l~~~~~~~~~~~~i~v  144 (260)
T 2xtp_A           68 WGNREIVII-DTPDMFSWKDHCEALYKEVQRCYLLSAPGPHVLLLVTQLGR-Y-TSQDQQAAQRVKEIFGEDAMGHTIVL  144 (260)
T ss_dssp             ETTEEEEEE-ECCGGGGSSCCCHHHHHHHHHHHHHHTTCCSEEEEEEETTC-C-CHHHHHHHHHHHHHHCGGGGGGEEEE
T ss_pred             eCCCEEEEE-ECcCCCCCCCCHHHHHHHHHHHHHhcCCCCcEEEEEEeCCC-C-CHHHHHHHHHHHHHhCchhhccEEEE
Confidence            456678877 9999988653  000    00      1123333  77764 3 677766655444 333   2356666


Q ss_pred             Ee-cCCCCCh
Q psy13818        184 QN-KIDLVKE  192 (207)
Q Consensus       184 vN-K~DlV~~  192 (207)
                      +| |+|+.+.
T Consensus       145 v~nK~Dl~~~  154 (260)
T 2xtp_A          145 FTHKEDLNGG  154 (260)
T ss_dssp             EECGGGGTTC
T ss_pred             EEcccccCCc
Confidence            76 9999864

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=88.31  E-value=1.3  Score=36.52  Aligned_cols=69  Identities=4%  Similarity=-0.091  Sum_probs=36.4

Q ss_pred             CCcEEEEEEeecCcceeec-cccc----cccc-----ccee--eecCCCCCCCchHHHH-HHHHHcC---CCeEEEEEec
Q psy13818        123 VNEKIALSRRVEKHWSLIE-GTVT----TKVL-----STRK--RTGNESCPQPQTSEHL-AAIEIMK---LKHIIILQNK  186 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rlig-g~~~----~nMi-----aGa~--V~A~eg~~~pQT~EHl-~il~~lG---I~~iIV~vNK  186 (207)
                      .|.++.|. +.||+.++-. ..-+    ++++     .++.  ++.+......+..+-+ .+.+.++   .+++|+++||
T Consensus        82 ~~~~l~li-DTpG~~~~~~~~~~~~~~i~~~l~~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK  160 (262)
T 3def_A           82 GGFTINII-DTPGLVEAGYVNHQALELIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTH  160 (262)
T ss_dssp             TTEEEEEE-ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred             CCeeEEEE-ECCCCCCcccchHHHHHHHHHHHhcCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeC
Confidence            45577777 9999987642 1111    2222     2222  3344332122222333 3334445   3589999999


Q ss_pred             CCCCCh
Q psy13818        187 IDLVKE  192 (207)
Q Consensus       187 ~DlV~~  192 (207)
                      +|+.++
T Consensus       161 ~Dl~~~  166 (262)
T 3def_A          161 AQFSPP  166 (262)
T ss_dssp             TTCCCS
T ss_pred             cccCCC
Confidence            999743

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=88.08  E-value=0.15  Score=38.19  Aligned_cols=61  Identities=13%  Similarity=-0.025  Sum_probs=34.0

Q ss_pred             cEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCch-HHHH-HHHHHcCCCeEEEEEecCCC
Q psy13818        125 EKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQT-SEHL-AAIEIMKLKHIIILQNKIDL  189 (207)
Q Consensus       125 ~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT-~EHl-~il~~lGI~~iIV~vNK~Dl  189 (207)
                      .++.|. +.+|+.++-. +.-. ++ .+++.  +|++++. .-+. .+.+ .+.+..+ ..+++|+||+|+
T Consensus        93 ~~~~i~-Dt~G~~~~~~~~~~~~~~-~d~~i~v~D~~~~~-s~~~~~~~~~~i~~~~~-~piilv~NK~D~  159 (208)
T 3clv_A           93 IKFDIW-DTAGQERYASIVPLYYRG-ATCAIVVFDISNSN-TLDRAKTWVNQLKISSN-YIIILVANKIDK  159 (208)
T ss_dssp             EEEEEE-ECTTGGGCTTTHHHHHTT-CSEEEEEEETTCHH-HHHHHHHHHHHHHHHSC-CEEEEEEECTTC
T ss_pred             eEEEEE-ECCCcHHHHHHHHHHhcC-CCEEEEEEECCCHH-HHHHHHHHHHHHHhhCC-CcEEEEEECCCc
Confidence            456665 8899887763 1111 22 23333  7776543 1122 2222 3344455 789999999994

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=87.88  E-value=0.15  Score=37.74  Aligned_cols=64  Identities=14%  Similarity=0.062  Sum_probs=33.1

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCch-HHHHHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQT-SEHLAAIEIMK--LKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT-~EHl~il~~lG--I~~iIV~vNK~DlV~~  192 (207)
                      ++.+. +.+|+.++-. +... ++. +++.  +|+++.. ..+. .+.+..+....  -..++++.||+|+.+.
T Consensus        65 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  135 (179)
T 1z0f_A           65 KLQIW-DTAGQERFRAVTRSYYRGA-AGALMVYDITRRS-TYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ  135 (179)
T ss_dssp             EEEEE-ECTTGGGTCHHHHHHHHTC-SEEEEEEETTCHH-HHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred             EEEEE-ECCCChHhhhhHHHHhccC-CEEEEEEeCcCHH-HHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence            45554 8888877653 2222 222 3333  6766542 1122 22222233321  2358999999999754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=87.80  E-value=0.37  Score=35.76  Aligned_cols=65  Identities=12%  Similarity=0.079  Sum_probs=30.1

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHH-c-CCCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEI-M-KLKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~-l-GI~~iIV~vNK~DlV~~  192 (207)
                      ++.+. +.+|+.++-. +.-. ++. +++.  +|+++........+.+..+.. . .-..++++.||+|+.+.
T Consensus        61 ~~~~~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  131 (180)
T 2g6b_A           61 KLQMW-DTAGQERFRSVTHAYYRDA-HALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE  131 (180)
T ss_dssp             EEEEE-ECCCC--------CCGGGC-SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC
T ss_pred             EEEEE-eCCCcHHHHHHHHHHccCC-CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcc
Confidence            44444 7788777653 2222 332 3333  666654211112233333333 2 23468999999999864

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=87.69  E-value=0.28  Score=36.74  Aligned_cols=65  Identities=14%  Similarity=0.007  Sum_probs=26.6

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM--KLKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l--GI~~iIV~vNK~DlV~~  192 (207)
                      ++.|. +.+|+.++-. +... ++. +++.  +|+++.....+..+.+..+...  .-..+++|.||+|+.+.
T Consensus        58 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  128 (183)
T 2fu5_C           58 KLQIW-DTAGQERFRTITTAYYRGA-MGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDK  128 (183)
T ss_dssp             EEEEE-EC---------CCTTTTTC-SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSC
T ss_pred             EEEEE-cCCCChhhhhhHHHHHhcC-CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCcc
Confidence            45554 8888877653 2222 332 3333  6665532112223333333332  12468999999999763

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=87.67  E-value=0.61  Score=35.57  Aligned_cols=67  Identities=16%  Similarity=0.095  Sum_probs=35.4

Q ss_pred             CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-HHHHH--cCCCeEEEEEecCCCCCh
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEI--MKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~--lGI~~iIV~vNK~DlV~~  192 (207)
                      +.++.|. +.+|+.++-. +... ++. +++.  +|+++.....+..+.+ .+++.  ..-..+|+|.||+|+.+.
T Consensus        66 ~~~~~l~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~  139 (188)
T 1zd9_A           66 NVTIKLW-DIGGQPRFRSMWERYCRGV-SAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA  139 (188)
T ss_dssp             TEEEEEE-EECCSHHHHTTHHHHHTTC-SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred             CEEEEEE-ECCCCHhHHHHHHHHHccC-CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence            4567766 8999887763 2211 222 3333  6765432112222222 22222  122358999999999865

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=87.63  E-value=0.83  Score=35.50  Aligned_cols=65  Identities=15%  Similarity=0.072  Sum_probs=30.9

Q ss_pred             CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHH-HHHH---cCCCeEEEEEecCCCCC
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA-AIEI---MKLKHIIILQNKIDLVK  191 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~-il~~---lGI~~iIV~vNK~DlV~  191 (207)
                      |.++.+. +.+|+.++-. |... ++. .++.  +|+.+.....+..+.+. +++.   -++ .+|+|.||+|+.+
T Consensus        68 ~~~l~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~-piilv~NK~Dl~~  140 (198)
T 1f6b_A           68 GMTFTTF-DLGGHIQARRVWKNYLPAI-NGIVFLVDCADHERLLESKEELDSLMTDETIANV-PILILGNKIDRPE  140 (198)
T ss_dssp             TEEEEEE-EECC----CCGGGGGGGGC-SEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTS-CEEEEEECTTSTT
T ss_pred             CEEEEEE-ECCCcHhhHHHHHHHHhcC-CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCC-cEEEEEECCCccc
Confidence            3456665 8888877653 2222 332 3333  67665421122222222 2221   233 4899999999975

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=87.62  E-value=0.12  Score=39.83  Aligned_cols=65  Identities=6%  Similarity=0.039  Sum_probs=35.8

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~~  192 (207)
                      ++.+. +.+|+.++-. +.-. ++. +++.  +|+++.....+..+.+..++...  -..++||.||+|+.+.
T Consensus        76 ~l~l~-Dt~G~~~~~~~~~~~~~~~-d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~  146 (192)
T 2il1_A           76 RLQIW-DTAGQERFNSITSAYYRSA-KGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD  146 (192)
T ss_dssp             EEEEE-EECCSGGGHHHHHHHHHHC-SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred             EEEEE-eCCCcHHHHHHHHHHhcCC-CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence            45555 8888877653 2222 222 3333  67765431122233334555543  2458999999999764

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=87.43  E-value=0.91  Score=35.98  Aligned_cols=39  Identities=26%  Similarity=0.235  Sum_probs=22.5

Q ss_pred             eecCCCCCCCchHHHHHHHHHc----CCCeEEEEEecCCCCChh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIM----KLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~l----GI~~iIV~vNK~DlV~~~  193 (207)
                      +|+++.. .-+..+...++..+    .-..+|+|.||+|+.+.+
T Consensus       116 ~d~~~~~-s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~  158 (228)
T 2qu8_A          116 IDISEQC-GLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMD  158 (228)
T ss_dssp             EETTCTT-SSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--
T ss_pred             Eeccccc-CcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCch
Confidence            7777654 33333334444433    124589999999998754

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=87.16  E-value=0.48  Score=35.89  Aligned_cols=76  Identities=16%  Similarity=0.127  Sum_probs=40.8

Q ss_pred             CcEEEEEEeecCcceeec-cccc-ccc---cccee--eecCCCCCCCchH----HHH-HHHHHc-----CCCeEEEEEec
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVT-TKV---LSTRK--RTGNESCPQPQTS----EHL-AAIEIM-----KLKHIIILQNK  186 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~-~nM---iaGa~--V~A~eg~~~pQT~----EHl-~il~~l-----GI~~iIV~vNK  186 (207)
                      +.++.+. +.+|+.++-. +.-. ++.   .+++.  +|+...   +++.    +++ .++...     .-..+++|.||
T Consensus        90 ~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK  165 (193)
T 2ged_A           90 GSGVTLV-DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD---PKKLTTTAEFLVDILSITESSCENGIDILIACNK  165 (193)
T ss_dssp             CTTCSEE-EETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCC---HHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEEC
T ss_pred             CCeEEEE-ECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCC---chhHHHHHHHHHHHHhhhhhccccCCCEEEEEEc
Confidence            4456665 8888887754 2222 333   23333  676621   2332    222 222221     12348999999


Q ss_pred             CCCCChhhHHHHHHHHH
Q psy13818        187 IDLVKEGQANEQHEQIV  203 (207)
Q Consensus       187 ~DlV~~~~~~~~~~eI~  203 (207)
                      +|+.+....++..+++.
T Consensus       166 ~Dl~~~~~~~~~~~~l~  182 (193)
T 2ged_A          166 SELFTARPPSKIKDALE  182 (193)
T ss_dssp             TTSTTCCCHHHHHHHHH
T ss_pred             hHhcCCCCHHHHHHHHH
Confidence            99988665555555444

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=86.97  E-value=0.41  Score=37.22  Aligned_cols=64  Identities=14%  Similarity=0.051  Sum_probs=32.9

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchH-HHHHHHH-HcCC-CeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTS-EHLAAIE-IMKL-KHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~-EHl~il~-~lGI-~~iIV~vNK~DlV~~  192 (207)
                      ++.+. +.+|+.++-. +... ++ .+++.  +|++++. ..+.. +.+..+. ...- ..+|+|.||+|+.+.
T Consensus        62 ~~~l~-Dt~G~~~~~~~~~~~~~~-~d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  132 (218)
T 4djt_A           62 KFNVW-DTAGQEKKAVLKDVYYIG-ASGAILFFDVTSRI-TCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR  132 (218)
T ss_dssp             EEEEE-EECSGGGTSCCCHHHHTT-CSEEEEEEETTCHH-HHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC--
T ss_pred             EEEEE-ecCCchhhchHHHHHhhc-CCEEEEEEeCCCHH-HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence            45555 8888877653 2222 22 23333  7776543 22222 2223332 2222 468999999999875

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=86.55  E-value=0.24  Score=36.38  Aligned_cols=65  Identities=17%  Similarity=0.159  Sum_probs=29.2

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM--KLKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l--GI~~iIV~vNK~DlV~~  192 (207)
                      ++.+. +.+|+.++-. +... ++. +++.  +|+++.....+..+.+..+...  .-..++++.||+|+.+.
T Consensus        56 ~l~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  126 (170)
T 1z08_A           56 NLAIW-DTAGQERFHALGPIYYRDS-NGAILVYDITDEDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE  126 (170)
T ss_dssp             EEEEE-ECCCC-------CCSSTTC-SEEEEEEETTCHHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred             EEEEE-ECCCcHhhhhhHHHHhccC-CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence            34443 7788776653 2222 222 3333  6665532112222233233221  22458999999999764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=86.46  E-value=0.99  Score=34.72  Aligned_cols=66  Identities=21%  Similarity=0.123  Sum_probs=34.1

Q ss_pred             CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-HHHHH--cCCCeEEEEEecCCCCC
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEI--MKLKHIIILQNKIDLVK  191 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~--lGI~~iIV~vNK~DlV~  191 (207)
                      |.++.+. +.+|+.++-. +... ++. +++.  +|+++.....+..+.+ .+++.  ..-..+++|.||+|+.+
T Consensus        66 ~~~~~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~  138 (190)
T 1m2o_B           66 NIKFTTF-DLGGHIQARRLWKDYFPEV-NGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPN  138 (190)
T ss_dssp             TEEEEEE-ECCCSGGGTTSGGGGCTTC-CEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred             CEEEEEE-ECCCCHHHHHHHHHHHhcC-CEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence            3456665 8888877653 2222 322 3333  6766542111222222 22221  12345899999999976

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=86.11  E-value=0.86  Score=33.17  Aligned_cols=64  Identities=8%  Similarity=0.029  Sum_probs=32.5

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCC
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVK  191 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~  191 (207)
                      ++.+. +.+|+.++-. +.-. ++. +++.  +|+++.....+..+.+..+....  -..++++.||+|+.+
T Consensus        53 ~~~l~-D~~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  122 (170)
T 1g16_A           53 KLQIW-DTAGQERFRTITTAYYRGA-MGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET  122 (170)
T ss_dssp             EEEEE-CCTTGGGTSCCCHHHHTTE-EEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred             EEEEE-eCCCChhhhhhHHHHhccC-CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc
Confidence            44554 8888877653 2211 222 3333  66654321112223333333321  346899999999954

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=85.93  E-value=0.37  Score=36.91  Aligned_cols=65  Identities=11%  Similarity=0.017  Sum_probs=34.7

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM--KLKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l--GI~~iIV~vNK~DlV~~  192 (207)
                      ++.|. +.+|+.++-. +... ++. +++.  +|+.+........+.+..+...  .-..+++|.||+|+.+.
T Consensus        58 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  128 (203)
T 1zbd_A           58 KLQIW-DTAGLERYRTITTAYYRGA-MGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE  128 (203)
T ss_dssp             EEEEE-EECCSGGGHHHHHTTGGGC-SEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS
T ss_pred             EEEEE-ECCCchhhcchHHHhhcCC-CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc
Confidence            55665 8888887753 2222 222 3333  6665532111222333333332  23468999999999764

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=85.85  E-value=0.51  Score=33.92  Aligned_cols=64  Identities=8%  Similarity=-0.051  Sum_probs=31.4

Q ss_pred             EEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHH-HHHcC--CCeEEEEEecCCCCCh
Q psy13818        127 IALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAA-IEIMK--LKHIIILQNKIDLVKE  192 (207)
Q Consensus       127 iaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~i-l~~lG--I~~iIV~vNK~DlV~~  192 (207)
                      +.+. +.+|+.++-. +... ++ .+++.  +|+++.....+..+.+.. .+...  -..++++.||+|+.+.
T Consensus        53 ~~~~-D~~G~~~~~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~  123 (166)
T 2ce2_X           53 LDIL-DTAGQEEYSAMRDQYMRT-GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR  123 (166)
T ss_dssp             EEEE-ECCCCSSCCHHHHHHHHH-CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC
T ss_pred             EEEE-ECCCchhhhHHHHHhhcc-CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc
Confidence            4444 8888776542 1111 22 13333  665543211122232332 23222  2458999999999873

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=85.81  E-value=0.95  Score=38.52  Aligned_cols=66  Identities=12%  Similarity=0.108  Sum_probs=35.9

Q ss_pred             CcEEEEEEeecCcceee-----c-cccc-ccccccee--eecCCCCCCCchHHHHH-----HHHH---cCCCeEEEEEec
Q psy13818        124 NEKIALSRRVEKHWSLI-----E-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA-----AIEI---MKLKHIIILQNK  186 (207)
Q Consensus       124 G~kiaIsR~V~gh~rli-----g-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~-----il~~---lGI~~iIV~vNK  186 (207)
                      +.++.|. +.+|+.+|.     . +... ++ .+++.  +|++..    ++.+++.     +..+   ..=..++++.||
T Consensus        51 ~~~l~i~-Dt~G~~~~~~~~~~~~~~~~~~~-ad~vi~V~D~t~~----~s~~~l~~~~~~l~~l~~~~~~~piilv~NK  124 (307)
T 3r7w_A           51 NMTLNLW-DCGGQDVFMENYFTKQKDHIFQM-VQVLIHVFDVEST----EVLKDIEIFAKALKQLRKYSPDAKIFVLLHK  124 (307)
T ss_dssp             TEEEEEE-EECCSHHHHHHHHTTTHHHHHTT-CSEEEEEEETTCS----CHHHHHHHHHHHHHHHHHHCTTCEEEEEEEC
T ss_pred             ceEEEEE-ECCCcHHHhhhhhhhHHHHHhcc-CCEEEEEEECCCh----hhHHHHHHHHHHHHHHHHhCCCCeEEEEEec
Confidence            3466666 999998883     1 1111 22 13333  666554    3333331     2222   112468999999


Q ss_pred             CCCCChhhH
Q psy13818        187 IDLVKEGQA  195 (207)
Q Consensus       187 ~DlV~~~~~  195 (207)
                      +|+.+.+..
T Consensus       125 ~Dl~~~~~r  133 (307)
T 3r7w_A          125 MDLVQLDKR  133 (307)
T ss_dssp             GGGSCHHHH
T ss_pred             ccccchhhh
Confidence            999985433

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=85.47  E-value=0.99  Score=34.56  Aligned_cols=64  Identities=9%  Similarity=0.047  Sum_probs=33.2

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc-C-CCeEEEEEecCCCCC
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM-K-LKHIIILQNKIDLVK  191 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l-G-I~~iIV~vNK~DlV~  191 (207)
                      ++.|. +.+|+.++-. +... ++. +++.  +|+.+........+.+..+... . -..+++|.||+|+.+
T Consensus        70 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~  139 (213)
T 3cph_A           70 KLQLW-DTAGQERFRTITTAYYRGA-MGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET  139 (213)
T ss_dssp             EEEEE-CCTTGGGGTCCCHHHHTTC-SEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS
T ss_pred             EEEEE-eCCCcHHHHHHHHHHhccC-CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence            45555 8888877653 2222 222 3333  6666532111223333333332 2 246899999999954

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=85.46  E-value=1.3  Score=36.62  Aligned_cols=70  Identities=3%  Similarity=-0.120  Sum_probs=37.7

Q ss_pred             CCcEEEEEEeecCcceeec-ccc----ccc-----ccccee--eecCCCCCCCchHHHH-HHHHHcCC---CeEEEEEec
Q psy13818        123 VNEKIALSRRVEKHWSLIE-GTV----TTK-----VLSTRK--RTGNESCPQPQTSEHL-AAIEIMKL---KHIIILQNK  186 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rlig-g~~----~~n-----MiaGa~--V~A~eg~~~pQT~EHl-~il~~lGI---~~iIV~vNK  186 (207)
                      .+.++.|. +.||+.++-. ..-    .+.     -..++.  ++.+.....++..+-+ .+.+.+|.   .++|+|+||
T Consensus        85 ~~~~l~ii-DTpG~~~~~~~~~~~~~~i~~~~~~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK  163 (270)
T 1h65_A           85 AGFTLNII-DTPGLIEGGYINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTH  163 (270)
T ss_dssp             TTEEEEEE-ECCCSEETTEECHHHHHHHHHHTTTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEEC
T ss_pred             CCeEEEEE-ECCCCCCCccchHHHHHHHHHHhhcCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEEC
Confidence            35567776 9999876531 000    000     122322  4454432233333333 33345565   489999999


Q ss_pred             CCCCChh
Q psy13818        187 IDLVKEG  193 (207)
Q Consensus       187 ~DlV~~~  193 (207)
                      +|+.+++
T Consensus       164 ~Dl~~~~  170 (270)
T 1h65_A          164 AQFSPPD  170 (270)
T ss_dssp             CSCCCGG
T ss_pred             cccCCcC
Confidence            9998654

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=85.44  E-value=0.26  Score=40.82  Aligned_cols=66  Identities=17%  Similarity=0.161  Sum_probs=37.8

Q ss_pred             CCcEEEEEEeecCcceeeccc----cccc-----ccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCC
Q psy13818        123 VNEKIALSRRVEKHWSLIEGT----VTTK-----VLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVK  191 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~----~~~n-----MiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~  191 (207)
                      .+.++.+. +.||+.+|-...    +.++     -.+++.  +|+..+   .+......-+.-++...+++|+||+|+.+
T Consensus        48 ~~~~~~l~-DtpG~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~D~~~~---~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~  123 (271)
T 3k53_A           48 REKEFLVV-DLPGIYSLTAHSIDELIARNFILDGNADVIVDIVDSTCL---MRNLFLTLELFEMEVKNIILVLNKFDLLK  123 (271)
T ss_dssp             TTEEEEEE-ECCCCSCCCSSCHHHHHHHHHHHTTCCSEEEEEEEGGGH---HHHHHHHHHHHHTTCCSEEEEEECHHHHH
T ss_pred             CCceEEEE-eCCCccccccCCHHHHHHHHhhhccCCcEEEEEecCCcc---hhhHHHHHHHHhcCCCCEEEEEEChhcCc
Confidence            34566665 999988876311    1111     123333  666654   23333333444456356899999999865


Q ss_pred             h
Q psy13818        192 E  192 (207)
Q Consensus       192 ~  192 (207)
                      .
T Consensus       124 ~  124 (271)
T 3k53_A          124 K  124 (271)
T ss_dssp             H
T ss_pred             c
Confidence            3

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=84.97  E-value=0.63  Score=38.15  Aligned_cols=37  Identities=22%  Similarity=0.274  Sum_probs=23.9

Q ss_pred             eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCChh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVKEG  193 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~~~  193 (207)
                      +|++.+. ..|..  +.+++.+.  =..+|+|+||+|+.+.+
T Consensus       170 ~d~~~~~-~~~~~--~~~~~~~~~~~~~~i~V~NK~Dl~~~~  208 (299)
T 2aka_B          170 SPANSDL-ANSDA--LKIAKEVDPQGQRTIGVITKLDLMDEG  208 (299)
T ss_dssp             EESSSCG-GGCHH--HHHHHHHCTTCSSEEEEEECGGGSCTT
T ss_pred             ecCCcch-hhhHH--HHHHHHhCCCCCeEEEEEEccccCCCC
Confidence            6787775 55543  23444432  13689999999998754

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=84.63  E-value=1.4  Score=33.61  Aligned_cols=64  Identities=13%  Similarity=0.010  Sum_probs=33.8

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchH-H-HHHHHHHcC-----CCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTS-E-HLAAIEIMK-----LKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~-E-Hl~il~~lG-----I~~iIV~vNK~DlV~~  192 (207)
                      ++.|. +.+|+.++-. +... ++. +++.  +|+++.. .-+.. + ...+.....     -..++++.||+|+.+.
T Consensus        58 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~  132 (207)
T 1vg8_A           58 TMQIW-DTAGQERFQSLGVAFYRGA-DCCVLVFDVTAPN-TFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENR  132 (207)
T ss_dssp             EEEEE-EECSSGGGSCSCCGGGTTC-SEEEEEEETTCHH-HHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC
T ss_pred             EEEEE-eCCCcHHHHHhHHHHHhCC-cEEEEEEECCCHH-HHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCccc
Confidence            45555 8888887764 2222 332 3333  6666542 11111 1 122333331     2358999999999853

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=84.62  E-value=0.87  Score=37.80  Aligned_cols=81  Identities=14%  Similarity=0.132  Sum_probs=42.1

Q ss_pred             EecceEEEEeeCcccccCCcEEEEEEeecCcceee--------c---cccccccc---ccee--eec-CCCCCCCchH-H
Q psy13818        106 TKADLAKISLTNPVCTEVNEKIALSRRVEKHWSLI--------E---GTVTTKVL---STRK--RTG-NESCPQPQTS-E  167 (207)
Q Consensus       106 ~~~Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rli--------g---g~~~~nMi---aGa~--V~A-~eg~~~pQT~-E  167 (207)
                      +..+...+.+..|    .+.++.|. +.||..+.-        .   ...+...+   .++.  +++ +.+. ..+.. +
T Consensus       116 ~~~~~~~~~i~~~----~~~~~~lv-DTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~-~~~~~~~  189 (315)
T 1jwy_B          116 ISAQPINLKIYSP----HVVNLTLV-DLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDL-ANSDALQ  189 (315)
T ss_dssp             CCCCCEEEEEEET----TSCSEEEE-ECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCS-TTCSHHH
T ss_pred             ccCccEEEEEecC----CCCCcEEE-ECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcch-hhhHHHH
Confidence            3455556666555    45677777 888865410        0   00001111   2222  665 5564 44443 3


Q ss_pred             HHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        168 HLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       168 Hl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      -+..+...+. .+|+|+||+|+++.+
T Consensus       190 i~~~~~~~~~-~~i~v~NK~Dl~~~~  214 (315)
T 1jwy_B          190 LAKEVDPEGK-RTIGVITKLDLMDKG  214 (315)
T ss_dssp             HHHHHCSSCS-SEEEEEECTTSSCSS
T ss_pred             HHHHhCCCCC-cEEEEEcCcccCCcc
Confidence            3333333344 588999999998754

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=84.61  E-value=0.29  Score=41.06  Aligned_cols=64  Identities=9%  Similarity=0.115  Sum_probs=37.4

Q ss_pred             CcEEEEEEeecCcceeec----c----cccc-----cccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCC
Q psy13818        124 NEKIALSRRVEKHWSLIE----G----TVTT-----KVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKID  188 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig----g----~~~~-----nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~D  188 (207)
                      +.++.+. +.||+.++-.    +    .+.+     +..+++.  +|+...   .+..+...-+.-++++ +|+|+||+|
T Consensus        49 ~~~~~li-DtpG~~~~~~~~~~~~~~e~i~~~~~~~~~~d~ii~VvD~~~~---~~~~~~~~~l~~~~~p-~ivv~NK~D  123 (274)
T 3i8s_A           49 DHQVTLV-DLPGTYSLTTISSQTSLDEQIACHYILSGDADLLINVVDASNL---ERNLYLTLQLLELGIP-CIVALNMLD  123 (274)
T ss_dssp             SCEEEEE-ECCCCSCSCC----CCHHHHHHHHHHHHTCCSEEEEEEEGGGH---HHHHHHHHHHHHHTCC-EEEEEECHH
T ss_pred             CCceEEE-ECcCCCccccccccCCHHHHHHHHHHhhcCCCEEEEEecCCCh---HHHHHHHHHHHhcCCC-EEEEEECcc
Confidence            4567665 8899888762    1    1111     2233333  776652   2334444444556775 889999999


Q ss_pred             CCCh
Q psy13818        189 LVKE  192 (207)
Q Consensus       189 lV~~  192 (207)
                      +.+.
T Consensus       124 l~~~  127 (274)
T 3i8s_A          124 IAEK  127 (274)
T ss_dssp             HHHH
T ss_pred             chhh
Confidence            8754

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=84.53  E-value=0.46  Score=35.39  Aligned_cols=65  Identities=11%  Similarity=0.005  Sum_probs=34.6

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHH-Hc--CCCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIE-IM--KLKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~-~l--GI~~iIV~vNK~DlV~~  192 (207)
                      ++.+. +.+|+.++-. +.-. ++. +++.  +|+.........++.+..+. ..  .-..+++|.||+|+.+.
T Consensus        71 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~  142 (195)
T 3bc1_A           71 HLQLW-DTAGLERFRSLTTAFFRDA-MGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ  142 (195)
T ss_dssp             EEEEE-EECCSGGGHHHHHHTTTTC-SEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGG
T ss_pred             EEEEE-eCCCcHHHHHHHHHHHcCC-CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence            56665 8899887753 2222 332 3333  67665431112233333232 22  23458999999999763

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=84.48  E-value=2.1  Score=32.77  Aligned_cols=56  Identities=11%  Similarity=0.072  Sum_probs=33.4

Q ss_pred             ccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhh
Q psy13818        148 VLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKF  205 (207)
Q Consensus       148 MiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~  205 (207)
                      ...++.  +++..+. ..+..+-...+...+++ ++++.||+|+.+..+.+...++++++
T Consensus       108 ~~~~~~~v~d~~~~~-~~~~~~~~~~~~~~~~~-~~~v~nK~D~~s~~~~~~~~~~~~~~  165 (210)
T 1pui_A          108 SLQGLVVLMDIRHPL-KDLDQQMIEWAVDSNIA-VLVLLTKADKLASGARKAQLNMVREA  165 (210)
T ss_dssp             TEEEEEEEEETTSCC-CHHHHHHHHHHHHTTCC-EEEEEECGGGSCHHHHHHHHHHHHHH
T ss_pred             cccEEEEEEECCCCC-chhHHHHHHHHHHcCCC-eEEEEecccCCCchhHHHHHHHHHHH
Confidence            334444  6666654 33444444556677876 56679999999876543334555544

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=84.29  E-value=3.2  Score=30.37  Aligned_cols=61  Identities=8%  Similarity=-0.091  Sum_probs=34.4

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHH-----HHHHHHcCCCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEH-----LAAIEIMKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EH-----l~il~~lGI~~iIV~vNK~DlV~~  192 (207)
                      ++.+. +.+|+.++-. +... ++ .+++.  +|+++.    ++.++     ..+.+...-..+|+|.||+|+.+.
T Consensus        59 ~~~i~-Dt~G~~~~~~~~~~~~~~-~d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  128 (181)
T 3tw8_B           59 KLQIW-DTAGQERFRTITSTYYRG-THGVIVVYDVTSA----ESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER  128 (181)
T ss_dssp             EEEEE-EETTGGGCSSCCGGGGTT-CSEEEEEEETTCH----HHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred             EEEEE-cCCCchhhhhhHHHHhcc-CCEEEEEEECCCH----HHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence            45554 8888887764 2222 22 23333  666653    33333     223333334568999999998764

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=84.18  E-value=1  Score=33.33  Aligned_cols=64  Identities=9%  Similarity=0.068  Sum_probs=32.9

Q ss_pred             EEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchH--HHHHHHH-HcCCCeEEEEEecCCCCChh
Q psy13818        127 IALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTS--EHLAAIE-IMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       127 iaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~--EHl~il~-~lGI~~iIV~vNK~DlV~~~  193 (207)
                      +.+. +.+|+.++-. +... ++. +++.  +|++... ..+..  +.+..++ ...-..+++|.||+|+.+..
T Consensus        55 ~~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  125 (186)
T 1mh1_A           55 LGLW-DTAGQEDYDRLRPLSYPQT-DVSLICFSLVSPA-SFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDK  125 (186)
T ss_dssp             EEEE-CCCCSGGGTTTGGGGCTTC-SEEEEEEETTCHH-HHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCH
T ss_pred             EEEE-ECCCCHhHHHHHHHhccCC-cEEEEEEECCChh-hHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccc
Confidence            4454 8888877653 2222 222 3333  6665432 11221  1222232 22234589999999997653

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=84.17  E-value=0.97  Score=35.05  Aligned_cols=62  Identities=15%  Similarity=0.147  Sum_probs=33.2

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHH-----HHHHHHc-CCCeEEEEEecCCCCChh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEH-----LAAIEIM-KLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EH-----l~il~~l-GI~~iIV~vNK~DlV~~~  193 (207)
                      ++.|. +.+|+.++-. +... ++. +++.  +|++..    ++.+.     +..++.. .-..+|+|.||+|+.+.+
T Consensus        74 ~~~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  145 (207)
T 2fv8_A           74 ELALW-DTAGQEDYDRLRPLSYPDT-DVILMCFSVDSP----DSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDE  145 (207)
T ss_dssp             EEEEE-ECTTCTTCTTTGGGGCTTC-CEEEEEEETTCH----HHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCH
T ss_pred             EEEEE-ECCCcHHHHHHHHhhcCCC-CEEEEEEECCCH----HHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccc
Confidence            45554 8888877653 2222 222 3333  555542    33222     2233322 234589999999998754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=84.13  E-value=1.2  Score=33.62  Aligned_cols=14  Identities=29%  Similarity=0.461  Sum_probs=12.0

Q ss_pred             CeEEEEEecCCCCC
Q psy13818        178 KHIIILQNKIDLVK  191 (207)
Q Consensus       178 ~~iIV~vNK~DlV~  191 (207)
                      ..++++.||+|+.+
T Consensus       127 ~p~ilv~nK~Dl~~  140 (190)
T 3con_A          127 VPMVLVGNKCDLPT  140 (190)
T ss_dssp             CCEEEEEECTTCSC
T ss_pred             CeEEEEEECCcCCc
Confidence            45899999999976

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=83.94  E-value=0.37  Score=36.79  Aligned_cols=65  Identities=12%  Similarity=0.001  Sum_probs=34.0

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM--KLKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l--GI~~iIV~vNK~DlV~~  192 (207)
                      ++.|. +.+|+.++-. +... ++ .+++.  +|+++.....+..+.+..+...  .-..+++|.||+|+.+.
T Consensus        71 ~~~i~-Dt~G~~~~~~~~~~~~~~-~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~  141 (191)
T 2a5j_A           71 KLQIW-DTAGQESFRSITRSYYRG-AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR  141 (191)
T ss_dssp             EEEEE-CCTTGGGTSCCCHHHHTT-CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred             EEEEE-ECCCchhhhhhHHHHhcc-CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCc
Confidence            45554 8888877653 2222 33 23333  6666532112223333333332  12358999999999753

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=83.78  E-value=1.3  Score=34.01  Aligned_cols=66  Identities=9%  Similarity=0.036  Sum_probs=31.3

Q ss_pred             CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC-----CCeEEEEEecCCCCChh
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK-----LKHIIILQNKIDLVKEG  193 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG-----I~~iIV~vNK~DlV~~~  193 (207)
                      +.++.+. +.+|+.++-. +... ++. +++.  +|+++.....+..+.  +.+++.     -..+|+|.||+|+.+..
T Consensus        72 ~~~~~i~-Dt~G~~~~~~~~~~~~~~~-d~iilv~D~~~~~s~~~~~~~--l~~~~~~~~~~~~piilv~NK~Dl~~~~  146 (192)
T 2b6h_A           72 NICFTVW-DVGGQDKIRPLWRHYFQNT-QGLIFVVDSNDRERVQESADE--LQKMLQEDELRDAVLLVFANKQDMPNAM  146 (192)
T ss_dssp             TEEEEEE-ECC-----CTTHHHHHHTC-CEEEEEEETTCGGGHHHHHHH--HHHHHTCGGGTTCEEEEEEECTTSTTCC
T ss_pred             CEEEEEE-ECCCCHhHHHHHHHHhccC-CEEEEEEECCCHHHHHHHHHH--HHHHhcccccCCCeEEEEEECCCCCCCC
Confidence            4467765 8899887753 2111 222 3333  676654211222222  222221     34689999999998753

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=83.76  E-value=1  Score=34.71  Aligned_cols=62  Identities=16%  Similarity=0.166  Sum_probs=33.5

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHH-----HHHHHHc-CCCeEEEEEecCCCCChh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEH-----LAAIEIM-KLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EH-----l~il~~l-GI~~iIV~vNK~DlV~~~  193 (207)
                      ++.|. +.+|+.++-. +... ++. +++.  +|++.    +++.+.     +..++.. .-..+++|.||+|+.+..
T Consensus        74 ~l~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  145 (201)
T 2gco_A           74 ELALW-DTAGQEDYDRLRPLSYPDT-DVILMCFSIDS----PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDE  145 (201)
T ss_dssp             EEEEE-CCCCSGGGTTTGGGGCTTC-SEEEEEEETTC----HHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCH
T ss_pred             EEEEE-ECCCchhHHHHHHHhcCCC-CEEEEEEECCC----HHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCc
Confidence            44554 8888877653 2222 222 3333  55553    233332     2333332 234589999999998754

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=83.71  E-value=2.2  Score=39.35  Aligned_cols=42  Identities=12%  Similarity=0.044  Sum_probs=31.1

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhH
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQA  195 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~  195 (207)
                      +|++++....|..+...+++.+.-..+|+|+||+|+.+....
T Consensus       320 vD~s~~~s~~~~~~~~~~l~~l~~~piIvV~NK~Dl~~~~~~  361 (476)
T 3gee_A          320 LDLGTERLDDELTEIRELKAAHPAAKFLTVANKLDRAANADA  361 (476)
T ss_dssp             EETTTCSSGGGHHHHHHHHHHCTTSEEEEEEECTTSCTTTHH
T ss_pred             EECCCCcchhhhHHHHHHHHhcCCCCEEEEEECcCCCCccch
Confidence            788877523345567777887776789999999999876543

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=83.59  E-value=0.71  Score=34.80  Aligned_cols=66  Identities=11%  Similarity=0.034  Sum_probs=34.4

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCChh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVKEG  193 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~~~  193 (207)
                      ++.|. +.+|+.++-. +... ++ .+++.  +|+++.....+..+.+..+....  -..+|++.||+|+.+..
T Consensus        66 ~~~i~-Dt~G~~~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~  137 (196)
T 3tkl_A           66 KLQIW-DTAGQERFRTITSSYYRG-AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK  137 (196)
T ss_dssp             EEEEE-EECCSGGGCTTHHHHHTT-CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC
T ss_pred             EEEEE-ECCCcHhhhhhHHHHHhh-CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc
Confidence            45554 8888877653 2211 22 23333  66665321122233333333332  23578999999998653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=83.52  E-value=4.1  Score=34.74  Aligned_cols=39  Identities=28%  Similarity=0.265  Sum_probs=24.2

Q ss_pred             eecCCCCCCCch-HHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        154 RTGNESCPQPQT-SEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       154 V~A~eg~~~pQT-~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      +|+++.-+.++. .+.+..++..+++ .|+|+||+||++++
T Consensus        87 ~d~~~p~~s~~~l~~~l~~~~~~~~~-~ilV~NK~DL~~~~  126 (302)
T 2yv5_A           87 ETLKMPEFNNYLLDNMLVVYEYFKVE-PVIVFNKIDLLNEE  126 (302)
T ss_dssp             ECSTTTTCCHHHHHHHHHHHHHTTCE-EEEEECCGGGCCHH
T ss_pred             EECCCCCCCHHHHHHHHHHHHhCCCC-EEEEEEcccCCCcc
Confidence            666654223332 2334455556665 78999999999765

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=83.28  E-value=1.1  Score=42.67  Aligned_cols=59  Identities=12%  Similarity=0.053  Sum_probs=48.6

Q ss_pred             cccccceeeccCCCC-CCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818         11 RADRLVGQVLGAVGA-LPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV   89 (207)
Q Consensus        11 ~~d~lvG~v~g~~g~-lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~   89 (207)
                      +.|--.|.|++.+++ .|.+..+++.+..+|.                                      .-.||+.|..
T Consensus       483 ~~di~rGdvl~~~~~~~~~~~~~f~a~v~~l~--------------------------------------~~~~l~~g~~  524 (611)
T 3izq_1          483 PEDIQNGDLAASVDYSSIHSAQCFVLELTTFD--------------------------------------MNRPLLPGTP  524 (611)
T ss_dssp             TTSCCTTCEEBCSTTCSCCCBSCEEEEEEECS--------------------------------------CSSCBCTTEE
T ss_pred             HhhCcceEEccCCCCCCCceeeEEEEEEEEEC--------------------------------------CCCCCCCCCE
Confidence            355667999999998 8888888888886651                                      1357899999


Q ss_pred             EEEEeeccccceEEEEEe
Q psy13818         90 LLVNIGSLSTGGRVLATK  107 (207)
Q Consensus        90 lmlniGs~~t~g~V~~~~  107 (207)
                      .++.+||..+.|+|..++
T Consensus       525 ~~l~~~t~~~~~~v~~l~  542 (611)
T 3izq_1          525 FILFIGVKEQPARIKRLI  542 (611)
T ss_dssp             EEEESSSCEEEEEEEEEE
T ss_pred             EEEEECCeEeeEEeeeee
Confidence            999999999999999873

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=83.12  E-value=0.35  Score=35.21  Aligned_cols=65  Identities=9%  Similarity=0.017  Sum_probs=33.1

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCC--eEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLK--HIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~--~iIV~vNK~DlV~~  192 (207)
                      ++.+. +.+|+.++-. +... ++ .+++.  +|+++.....+..+.+.-+.....+  .++++.||+|+.+.
T Consensus        56 ~~~~~-D~~G~~~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~  126 (170)
T 1r2q_A           56 KFEIW-DTAGQERYHSLAPMYYRG-AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK  126 (170)
T ss_dssp             EEEEE-EECCSGGGGGGHHHHHTT-CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred             EEEEE-eCCCcHHhhhhhHHhccC-CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence            55665 8888887753 2111 22 13333  6666542112233333333333222  36677799999754

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=82.92  E-value=1.3  Score=40.34  Aligned_cols=59  Identities=12%  Similarity=0.053  Sum_probs=48.5

Q ss_pred             cccccceeeccCCCC-CCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCce
Q psy13818         11 RADRLVGQVLGAVGA-LPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEV   89 (207)
Q Consensus        11 ~~d~lvG~v~g~~g~-lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~   89 (207)
                      ..|--.|.|+..++. .|+...+++.+..+|.                                      .-.+|+.|..
T Consensus       349 ~~di~rG~vl~~~~~~~~~~~~~f~a~v~~l~--------------------------------------~~~~l~~g~~  390 (483)
T 3p26_A          349 PEDIQNGDLAASVDYSSIHSAQCFVLELTTFD--------------------------------------MNRPLLPGTP  390 (483)
T ss_dssp             GGGCCTTCEEECTTCCCCEECSEEEEEEEECS--------------------------------------CSSCBCTTCE
T ss_pred             cccCCceEEEEcCCCCCCceeeEEEEEEEEEC--------------------------------------CCCCCCCCCE
Confidence            356667999999998 8889999998887651                                      1357899999


Q ss_pred             EEEEeeccccceEEEEEe
Q psy13818         90 LLVNIGSLSTGGRVLATK  107 (207)
Q Consensus        90 lmlniGs~~t~g~V~~~~  107 (207)
                      .++.+||..+.|+|..++
T Consensus       391 ~~l~~~t~~~~~~v~~i~  408 (483)
T 3p26_A          391 FILFIGVKEQPARIKRLI  408 (483)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEeCceEEEEEEEEEE
Confidence            999999999999999873

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=82.67  E-value=0.94  Score=34.80  Aligned_cols=65  Identities=11%  Similarity=0.003  Sum_probs=33.2

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM--KLKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l--GI~~iIV~vNK~DlV~~  192 (207)
                      ++.|. +.+|+.++-. +... ++. +++.  +|+++........+.+..+...  .-..++||.||+|+.+.
T Consensus        58 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  128 (206)
T 2bcg_Y           58 KLQIW-DTAGQERFRTITSSYYRGS-HGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK  128 (206)
T ss_dssp             EEEEE-CCTTTTTTTCCCGGGGTTC-SEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred             EEEEE-eCCChHHHHHHHHHhccCC-CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence            45554 8888877653 2222 222 3333  6665532011112222223322  22458999999999864

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=82.44  E-value=1.6  Score=38.32  Aligned_cols=29  Identities=14%  Similarity=0.197  Sum_probs=22.2

Q ss_pred             CeEEEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818        178 KHIIILQNKIDLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       178 ~~iIV~vNK~DlV~~~~~~~~~~eI~~~l  206 (207)
                      ..+|+|+||+|+.+.++.....+++.+++
T Consensus       175 ~piIlV~NK~Dl~~~~ev~~~k~~i~~~~  203 (361)
T 2qag_A          175 VNIVPVIAKADTLTLKERERLKKRILDEI  203 (361)
T ss_dssp             SCEEEEEECCSSSCHHHHHHHHHHHHHHT
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            35999999999998776655556776654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=82.04  E-value=0.32  Score=41.15  Aligned_cols=19  Identities=42%  Similarity=0.571  Sum_probs=15.4

Q ss_pred             CCeEEEEEecCCCCChhhH
Q psy13818        177 LKHIIILQNKIDLVKEGQA  195 (207)
Q Consensus       177 I~~iIV~vNK~DlV~~~~~  195 (207)
                      -+..|+++||+||++.+..
T Consensus        46 ~k~~iivlNK~DL~~~~~~   64 (262)
T 3cnl_A           46 RKETIILLNKVDIADEKTT   64 (262)
T ss_dssp             TSEEEEEEECGGGSCHHHH
T ss_pred             CCCcEEEEECccCCCHHHH
Confidence            5678899999999987543

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=81.56  E-value=0.45  Score=34.70  Aligned_cols=65  Identities=9%  Similarity=0.023  Sum_probs=33.6

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc----CCCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM----KLKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l----GI~~iIV~vNK~DlV~~  192 (207)
                      ++.+. +.+|+.++-. +... ++ .+++.  +|++......+..+.+..+..+    .-..++++.||+|+.+.
T Consensus        52 ~~~~~-Dt~G~~~~~~~~~~~~~~-~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~  124 (172)
T 2erx_A           52 TLQIT-DTTGSHQFPAMQRLSISK-GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS  124 (172)
T ss_dssp             EEEEE-ECCSCSSCHHHHHHHHHH-CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred             EEEEE-ECCCchhhHHHHHHhccc-CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence            45555 8888877653 2222 22 23333  6665432122333333333322    12358999999999764

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=81.33  E-value=0.44  Score=37.58  Aligned_cols=65  Identities=11%  Similarity=-0.014  Sum_probs=32.1

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHcC--CCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMK--LKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lG--I~~iIV~vNK~DlV~~  192 (207)
                      ++.|. +.+|+.+|-. +... ++. +++.  +|+++........+.+..+....  -..+|||.||+|+.+.
T Consensus        63 ~~~i~-Dt~G~~~~~~~~~~~~~~~-d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~  133 (223)
T 3cpj_B           63 KAQIW-DTAGQERYRAITSAYYRGA-VGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL  133 (223)
T ss_dssp             EEEEE-CCTTTTTTTCCCGGGTTTC-CEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGG
T ss_pred             EEEEE-ECCCccchhhhHHHHhccC-CEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence            45554 8888887753 2222 222 3333  55554320111222233333321  2358899999999753

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=81.27  E-value=1.9  Score=32.60  Aligned_cols=66  Identities=9%  Similarity=0.029  Sum_probs=33.7

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchH-HHHH-HHHHcCCCeEEEEEecCCCCChh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTS-EHLA-AIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~-EHl~-il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      ++.|. +.+|+.++-. +... ++. +++.  +|++......+.. +.+. +.+...-..+++|.||+|+.+..
T Consensus        67 ~~~i~-D~~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~  138 (194)
T 2atx_A           67 LLGLY-DTAGQEDYDRLRPLSYPMT-DVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDP  138 (194)
T ss_dssp             EEEEE-CCCCSSSSTTTGGGGCTTC-SEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCH
T ss_pred             EEEEE-ECCCCcchhHHHHHhcCCC-CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccc
Confidence            45554 8888877653 2222 322 3333  6665432011111 1222 22333334689999999998743

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=81.20  E-value=1.7  Score=33.83  Aligned_cols=62  Identities=11%  Similarity=0.075  Sum_probs=34.5

Q ss_pred             EEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-----HHHHHc-CCCeEEEEEecCCCCChhh
Q psy13818        127 IALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-----AAIEIM-KLKHIIILQNKIDLVKEGQ  194 (207)
Q Consensus       127 iaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-----~il~~l-GI~~iIV~vNK~DlV~~~~  194 (207)
                      +.|. +.+|+.++-. +... ++. +++.  +|+++.    ++.+++     ..++.. .-..+|+|.||+|+.+...
T Consensus        80 l~i~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~  151 (204)
T 4gzl_A           80 LGLW-DTAGLEDYDRLRPLSYPQT-DVFLICFSLVSP----ASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKD  151 (204)
T ss_dssp             EEEE-EECCSGGGTTTGGGGCTTC-SEEEEEEETTCH----HHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHH
T ss_pred             EEEE-ECCCchhhHHHHHHHhccC-CEEEEEEECCCH----HHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchh
Confidence            3355 8899888763 2222 222 3333  666543    444443     233322 2345889999999987553

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=81.01  E-value=2.7  Score=37.49  Aligned_cols=38  Identities=18%  Similarity=0.138  Sum_probs=25.5

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      +|+.++. ..|..+-...+...|. .+|+|+||+|+.+.+
T Consensus       271 ~d~~~~~-~~~~~~i~~~l~~~~~-~~ilv~NK~Dl~~~~  308 (439)
T 1mky_A          271 LDATQGI-TRQDQRMAGLMERRGR-ASVVVFNKWDLVVHR  308 (439)
T ss_dssp             EETTTCC-CHHHHHHHHHHHHTTC-EEEEEEECGGGSTTG
T ss_pred             EeCCCCC-CHHHHHHHHHHHHcCC-CEEEEEECccCCCch
Confidence            6787775 5554433344455564 589999999998754

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=80.98  E-value=0.57  Score=34.47  Aligned_cols=65  Identities=14%  Similarity=0.062  Sum_probs=32.8

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc-C-CCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM-K-LKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l-G-I~~iIV~vNK~DlV~~  192 (207)
                      ++.+. +.+|+.++-. +.-. ++. +++.  +|++......+..+.+..+... + -..+++|+||+|+.+.
T Consensus        64 ~~~~~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~  134 (179)
T 2y8e_A           64 RLQLW-DTAGQERFRSLIPSYIRDS-TVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK  134 (179)
T ss_dssp             EEEEE-EECCSGGGGGGSHHHHHTC-SEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred             EEEEE-ECCCcHHHHHHHHHHhcCC-CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence            45554 8888877653 2111 221 3333  6665432112222333222222 1 2358999999999764

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=80.95  E-value=3.6  Score=35.39  Aligned_cols=70  Identities=11%  Similarity=-0.002  Sum_probs=32.3

Q ss_pred             CCcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchH-HHHHHHHHcC--CCeEEEEEecCCCCChhh
Q psy13818        123 VNEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTS-EHLAAIEIMK--LKHIIILQNKIDLVKEGQ  194 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~-EHl~il~~lG--I~~iIV~vNK~DlV~~~~  194 (207)
                      .+.++.|. +.+|+.+|-. +... ++ .+++.  +|+++........ +...+++...  =..+|||.||+|+.+...
T Consensus       207 ~~~~l~i~-Dt~G~~~~~~~~~~~~~~-ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~~  283 (329)
T 3o47_A          207 KNISFTVW-DVGGQDKIRPLWRHYFQN-TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMN  283 (329)
T ss_dssp             TTEEEEEE-ECC-----CCSHHHHHTT-EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCCC
T ss_pred             CcEEEEEE-ECCCCHhHHHHHHHHhcc-CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCcccC
Confidence            34567776 9999888763 2111 22 23333  7776432111222 2222222221  224899999999987643

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=80.92  E-value=1.5  Score=33.25  Aligned_cols=68  Identities=13%  Similarity=0.114  Sum_probs=35.5

Q ss_pred             CcEEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHH-HHHH--cCCCeEEEEEecCCCCChh
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA-AIEI--MKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~-il~~--lGI~~iIV~vNK~DlV~~~  193 (207)
                      +.++.+. +.+|+.++-. |... ++ .+++.  +|+++.....+..+++. +++.  ..-..++++.||+|+.+..
T Consensus        59 ~~~l~i~-Dt~G~~~~~~~~~~~~~~-~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~  133 (181)
T 1fzq_A           59 GFKLNVW-DIGGQRKIRPYWRSYFEN-TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA  133 (181)
T ss_dssp             TEEEEEE-ECSSCGGGHHHHHHHHTT-CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC
T ss_pred             CEEEEEE-ECCCCHHHHHHHHHHhCC-CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC
Confidence            4466665 8888877653 2222 32 23333  66654321122222222 2222  1223589999999998754

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=80.91  E-value=1.5  Score=33.12  Aligned_cols=64  Identities=11%  Similarity=-0.033  Sum_probs=30.7

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc-----CCCeEEEEEecCCCCC
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM-----KLKHIIILQNKIDLVK  191 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l-----GI~~iIV~vNK~DlV~  191 (207)
                      ++.|. +.+|+.++-. +... ++. +++.  +|+++.....+..+.+..+...     .-..+|||.||+|+.+
T Consensus        74 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~  146 (208)
T 2yc2_C           74 ELFLL-DTAGSDLYKEQISQYWNGV-YYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP  146 (208)
T ss_dssp             EEEEE-ETTTTHHHHHHHSTTCCCC-CEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred             EEEEE-ECCCcHHHHHHHHHHHhhC-cEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence            45555 8888877653 2222 332 3333  6665542112223333333321     2346899999999987

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=80.36  E-value=0.41  Score=37.28  Aligned_cols=65  Identities=8%  Similarity=-0.009  Sum_probs=34.0

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHHHHHHc--CCCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIM--KLKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~l--GI~~iIV~vNK~DlV~~  192 (207)
                      ++.|. +.+|+.++-. +... ++. +++.  +|+++.....+..+.+..+...  .-..+|||.||+|+.+.
T Consensus        79 ~l~i~-Dt~G~~~~~~~~~~~~~~~-d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~  149 (201)
T 2hup_A           79 KLQIW-DTAGQERFRTITQSYYRSA-NGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL  149 (201)
T ss_dssp             EEEEE-CCTTCGGGHHHHHHHHTTC-SEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred             EEEEE-ECCCcHhHHHHHHHHHhhC-CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccc
Confidence            55555 8888887764 3222 332 4433  6665432111222233223222  22458899999999753

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=80.32  E-value=0.92  Score=34.23  Aligned_cols=65  Identities=8%  Similarity=0.044  Sum_probs=33.2

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHHH-HHHHcC---CCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHLA-AIEIMK---LKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~-il~~lG---I~~iIV~vNK~DlV~~  192 (207)
                      ++.+. +.+|+.++-. +... ++ .+++.  +|++......+..+.+. +.+..+   -..+|+|.||+|+.+.
T Consensus        57 ~~~l~-Dt~G~~~~~~~~~~~~~~-~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~  129 (199)
T 2gf0_A           57 TLQIT-DTTGSHQFPAMQRLSISK-GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR  129 (199)
T ss_dssp             EEEEE-ECCGGGSCHHHHHHHHHH-CSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC
T ss_pred             EEEEE-eCCChHHhHHHHHHhhcc-CCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc
Confidence            45555 8888877653 2222 22 23333  66654210112222222 333321   2358999999999763

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=80.09  E-value=1.8  Score=31.82  Aligned_cols=65  Identities=11%  Similarity=0.025  Sum_probs=27.2

Q ss_pred             EEEEEEeecCcceeec-cccc-ccccccee--eecCCCCCCCchHHHH-HHHHHc-----CCCeEEEEEecCCCCCh
Q psy13818        126 KIALSRRVEKHWSLIE-GTVT-TKVLSTRK--RTGNESCPQPQTSEHL-AAIEIM-----KLKHIIILQNKIDLVKE  192 (207)
Q Consensus       126 kiaIsR~V~gh~rlig-g~~~-~nMiaGa~--V~A~eg~~~pQT~EHl-~il~~l-----GI~~iIV~vNK~DlV~~  192 (207)
                      ++.+. +.+|+.++-. +... ++. +++.  +|+++.....+..+.+ .+....     .-..++++.||+|+.+.
T Consensus        59 ~~~l~-Dt~G~~~~~~~~~~~~~~~-d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  133 (182)
T 1ky3_A           59 TMQVW-DTAGQERFQSLGVAFYRGA-DCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEES  133 (182)
T ss_dssp             EEEEE-CCC----------CCSTTC-CEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGG
T ss_pred             EEEEE-ECCCChHhhhhhHHHhhcC-CEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCccccc
Confidence            44554 7777776653 2222 332 3333  6665542111112222 233332     22358899999999654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	207
d1kk1a2	89	b.44.1.1 (A:322-410) Initiation factor eIF2 gamma	2e-32
d1s0ua2	90	b.44.1.1 (A:348-437) Initiation factor eIF2 gamma	2e-32
d2qn6a2	95	b.44.1.1 (A:321-415) Initiation factor eIF2 gamma	1e-30
d1kk1a1	121	b.43.3.1 (A:201-321) Initiation factor eIF2 gamma	3e-05
d1s0ua1	118	b.43.3.1 (A:230-347) Initiation factor eIF2 gamma	1e-04
d2c78a3	204	c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N	5e-04
d1d2ea3	196	c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),	0.002
d1r5ba3	245	c.37.1.8 (A:215-459) Eukaryotic peptide chain rele	0.003

>d1kk1a2 b.44.1.1 (A:322-410) Initiation factor eIF2 gamma subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 89

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Initiation factor eIF2 gamma subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

 Score =  110 bits (277), Expect = 2e-32
 Identities = 30/85 (35%), Positives = 49/85 (57%), Gaps = 5/85 (5%)

Query: 56  KLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISL 115
            L +  HLL+R++G      ++  KV+ + R EVLL+N+G+  T G V     D  ++ L
Sbjct: 3   SLRLEVHLLERVVGT-----EQELKVEPIKRKEVLLLNVGTARTMGLVTGLGKDEIEVKL 57

Query: 116 TNPVCTEVNEKIALSRRVEKHWSLI 140
             PVC E  +++A+SR++   W LI
Sbjct: 58  QIPVCAEPGDRVAISRQIGSRWRLI 82

>d1s0ua2 b.44.1.1 (A:348-437) Initiation factor eIF2 gamma subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 90

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Initiation factor eIF2 gamma subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score =  110 bits (277), Expect = 2e-32
 Identities = 32/85 (37%), Positives = 53/85 (62%), Gaps = 5/85 (5%)

Query: 56  KLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISL 115
           K+ I  +LL R++G      K+  K++ L   EVL++NIG+ +T G + + + D+A I L
Sbjct: 4   KITIRANLLDRVVGT-----KEELKIEPLRTGEVLMLNIGTATTAGVITSARGDIADIKL 58

Query: 116 TNPVCTEVNEKIALSRRVEKHWSLI 140
             P+C E+ +++A+SRRV   W LI
Sbjct: 59  KLPICAEIGDRVAISRRVGSRWRLI 83

>d2qn6a2 b.44.1.1 (A:321-415) Initiation factor eIF2 gamma subunit {Sulfolobus solfataricus [TaxId: 2287]} Length = 95

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Initiation factor eIF2 gamma subunit
species: Sulfolobus solfataricus [TaxId: 2287]

 Score =  106 bits (266), Expect = 1e-30
 Identities = 26/86 (30%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 56  KLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKADLAKISL 115
            + I Y+LL+R++G      K+  KV  +   E L++++GS +T G V + K D  ++ L
Sbjct: 8   NIRIKYNLLERVVGA-----KEMLKVDPIRAKETLMLSVGSSTTLGIVTSVKKDEIEVEL 62

Query: 116 TNPVCTEVNE-KIALSRRVEKHWSLI 140
             PV    N  +  +SR++   W +I
Sbjct: 63  RRPVAVWSNNIRTVISRQIAGRWRMI 88

>d1kk1a1 b.43.3.1 (A:201-321) Initiation factor eIF2 gamma subunit, domain II {Archaeon Pyrococcus abyssi [TaxId: 29292]} Length = 121

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Initiation factor eIF2 gamma subunit, domain II
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

 Score = 39.7 bits (92), Expect = 3e-05
 Identities = 13/29 (44%), Positives = 19/29 (65%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALPKI 29
           VGTK++P L + D + G V+G  G LP +
Sbjct: 93  VGTKLDPYLTKGDLMAGNVVGKPGKLPPV 121

>d1s0ua1 b.43.3.1 (A:230-347) Initiation factor eIF2 gamma subunit, domain II {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 118

class: All beta proteins
fold: Reductase/isomerase/elongation factor common domain
superfamily: Translation proteins
family: Elongation factors
domain: Initiation factor eIF2 gamma subunit, domain II
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 13/27 (48%), Positives = 18/27 (66%)

Query: 1   VGTKIEPTLCRADRLVGQVLGAVGALP 27
           VGT ++P L ++D L G V+G  G LP
Sbjct: 91  VGTTLDPYLTKSDALTGSVVGLPGTLP 117

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} Length = 204

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 13/45 (28%), Positives = 25/45 (55%)

Query: 160 CPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVK 204
            P PQT EH+     + + +I++  NK+D+V + +  +  E  V+
Sbjct: 103 GPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLDLVEMEVR 147

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} Length = 196

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

 Score = 35.4 bits (81), Expect = 0.002
 Identities = 14/44 (31%), Positives = 25/44 (56%)

Query: 161 PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVK 204
           P PQT EHL     + ++H+++  NK D V++ +  E  E  ++
Sbjct: 103 PMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEMVELVELEIR 146

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 245

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 35.2 bits (80), Expect = 0.003
 Identities = 10/47 (21%), Positives = 22/47 (46%)

Query: 160 CPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFV 206
               QT EH        + H++++ NK+D      + E++++ V  +
Sbjct: 145 ERGGQTREHAVLARTQGINHLVVVINKMDEPSVQWSEERYKECVDKL 191

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	207
d2qn6a2	95	Initiation factor eIF2 gamma subunit {Sulfolobus s	100.0
d1s0ua2	90	Initiation factor eIF2 gamma subunit {Archaeon Met	99.97
d1kk1a2	89	Initiation factor eIF2 gamma subunit {Archaeon Pyr	99.97
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.65
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.64
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.62
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.62
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.61
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.55
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.55
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.47
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	98.88
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	98.72
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	98.71
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	98.6
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	98.14
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	97.65
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	96.99
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	96.43
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	95.79
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	95.57
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	95.46
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	93.2
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	91.13
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	90.41
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	88.51
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	88.12
d1nrjb_	209	Signal recognition particle receptor beta-subunit	87.5
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	86.81
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	85.3
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	83.44
d2fh5b1	207	Signal recognition particle receptor beta-subunit	83.06
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	82.55

>d2qn6a2 b.44.1.1 (A:321-415) Initiation factor eIF2 gamma subunit {Sulfolobus solfataricus [TaxId: 2287]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Initiation factor eIF2 gamma subunit
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=100.00  E-value=2e-35  Score=224.77  Aligned_cols=91  Identities=32%  Similarity=0.599  Sum_probs=80.6

Q ss_pred             CCCCcceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceEEEEeeccccceEE
Q psy13818         24 GALPKIFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRV  103 (207)
Q Consensus        24 g~lp~v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lmlniGs~~t~g~V  103 (207)
                      |.||++| +++|+||||+|++                        |+     +++.||+||+.||+||+||||++|+|+|
T Consensus         1 g~LP~~~-~i~i~~~Ll~r~v------------------------G~-----~~~~kV~pi~~~E~LmlniGtatt~G~V   50 (95)
T d2qn6a2           1 AEVPVLW-NIRIKYNLLERVV------------------------GA-----KEMLKVDPIRAKETLMLSVGSSTTLGIV   50 (95)
T ss_dssp             CCCCEEE-EEEEEEEECSSCC------------------------------------CCCCCTTCEEEEEETTEEEEEEE
T ss_pred             CCCCcEE-EEEEEEEehHhhh------------------------CC-----CccccccCCcCCCEEEEEeccccccEEE
Confidence            7899887 7999999999999                        77     5677999999999999999999999999


Q ss_pred             EEEecceEEEEeeCcccccCCc-EEEEEEeecCcceeec-ccc
Q psy13818        104 LATKADLAKISLTNPVCTEVNE-KIALSRRVEKHWSLIE-GTV  144 (207)
Q Consensus       104 ~~~~~Dla~i~L~~Pvc~~~G~-kiaIsR~V~gh~rlig-g~~  144 (207)
                      +++++|.+++.|+.|+||+.|+ |++||||+.+|||||| |++
T Consensus        51 ~~vk~d~~~v~L~~Pvca~~g~~rVaiSRri~~rWRLIG~G~I   93 (95)
T d2qn6a2          51 TSVKKDEIEVELRRPVAVWSNNIRTVISRQIAGRWRMIGWGLV   93 (95)
T ss_dssp             EEECSSEEEEEEEEEEECSSSSEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEeCCEEEEEecCCEEecCCCcEEEEEEEeCCEEEEEeEEEE
Confidence            9999999999999999999997 9999999999999999 654

>d1s0ua2 b.44.1.1 (A:348-437) Initiation factor eIF2 gamma subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Initiation factor eIF2 gamma subunit
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.97  E-value=1.9e-33  Score=211.98  Aligned_cols=87  Identities=39%  Similarity=0.749  Sum_probs=82.3

Q ss_pred             ceEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceEEEEeeccccceEEEEEec
Q psy13818         29 IFIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKA  108 (207)
Q Consensus        29 v~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lmlniGs~~t~g~V~~~~~  108 (207)
                      ||++++|+|+||+|++                        |.     +++.||+||+.||+||+||||++|+|+|+++++
T Consensus         1 i~~~i~i~~~Ll~r~v------------------------G~-----~~~~kV~~i~~~E~LmlnvGtatt~G~V~~vk~   51 (90)
T d1s0ua2           1 IREKITIRANLLDRVV------------------------GT-----KEELKIEPLRTGEVLMLNIGTATTAGVITSARG   51 (90)
T ss_dssp             EEEEEEEEEEECCCCS------------------------SC-----SSTTCCCCCCTTCEEEEEETTEEEEEEEEEEET
T ss_pred             CEEEEEEEEehhhHhh------------------------CC-----CccccccCCcCCCEEEEEeccccccEEEEEEeC
Confidence            6889999999999999                        76     567799999999999999999999999999999


Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeec-ccc
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTV  144 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~  144 (207)
                      |.+++.|+.|+||+.|+|++||||+.+|||||| |++
T Consensus        52 d~~~i~L~~PvCa~~g~rVaiSRri~~rWRLIG~G~I   88 (90)
T d1s0ua2          52 DIADIKLKLPICAEIGDRVAISRRVGSRWRLIGYGTI   88 (90)
T ss_dssp             TEEEEEEEEEEECCTTCEEEEEEECSSSEEEEEEEEE
T ss_pred             CEEEEEecCCEECCCCCEEEEEEEeCCEEEEEEEEEe
Confidence            999999999999999999999999999999999 554

>d1kk1a2 b.44.1.1 (A:322-410) Initiation factor eIF2 gamma subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: All beta proteins
fold: Elongation factor/aminomethyltransferase common domain
superfamily: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
family: EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain
domain: Initiation factor eIF2 gamma subunit
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.97  E-value=3.2e-33  Score=210.37  Aligned_cols=86  Identities=36%  Similarity=0.675  Sum_probs=79.9

Q ss_pred             eEEEEEeHhhHHHHHhhhccCCcccccccceeeeeeecccccccCCcccceeccCccCceEEEEeeccccceEEEEEecc
Q psy13818         30 FIELEISYHLLKRLLGVRMEGDKKGAKLEISYHLLKRLLGVRMEGDKKGAKVQKLTRNEVLLVNIGSLSTGGRVLATKAD  109 (207)
Q Consensus        30 ~~~l~i~~~Ll~r~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~t~~~k~~~Kv~~l~~~E~lmlniGs~~t~g~V~~~~~D  109 (207)
                      |.+++|+||||+|++                        |.     +++.||+||+.||+||+||||++|+|+|+++++|
T Consensus         1 w~~i~i~~~Ll~r~v------------------------G~-----~~~~kV~pi~~~E~LmlnvGtatt~G~V~~vk~d   51 (89)
T d1kk1a2           1 WDSLRLEVHLLERVV------------------------GT-----EQELKVEPIKRKEVLLLNVGTARTMGLVTGLGKD   51 (89)
T ss_dssp             EEEEEEEEEECCCCC-------------------------------CCCCSCCCCCTTCEEEEEETTEEEEEEEEEEETT
T ss_pred             CeEEEEEEEEhHHhh------------------------CC-----cccccccCCcCCCEEEEEeccccccEEEEEEeCc
Confidence            788999999999998                        77     5677999999999999999999999999999999


Q ss_pred             eEEEEeeCcccccCCcEEEEEEeecCcceeec-ccc
Q psy13818        110 LAKISLTNPVCTEVNEKIALSRRVEKHWSLIE-GTV  144 (207)
Q Consensus       110 la~i~L~~Pvc~~~G~kiaIsR~V~gh~rlig-g~~  144 (207)
                      .+++.|+.|+||+.|+|++||||+.+|||||| |++
T Consensus        52 ~~~v~L~~Pvca~~g~rVaiSRri~~rWRLIG~G~I   87 (89)
T d1kk1a2          52 EIEVKLQIPVCAEPGDRVAISRQIGSRWRLIGYGII   87 (89)
T ss_dssp             EEEEEEEEEEECCTTCEEEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEeCCCEECCCCCEEEEEEEeCCEEEEEeEEEE
Confidence            99999999999999999999999999999999 655

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.65  E-value=4.9e-17  Score=135.34  Aligned_cols=64  Identities=20%  Similarity=0.255  Sum_probs=60.1

Q ss_pred             CCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      .+.++.|+ +.|||.+|+     +||++|++        |||.+|+ +|||+||+.++..+||+++||++||||+++++
T Consensus        87 ~~~~~~ii-D~PGH~dfv-----~~~~~g~~~aD~ailVvda~~G~-~~Qt~e~~~~~~~~gv~~iiv~vNK~D~~~~~  158 (222)
T d1zunb3          87 AKRKFIIA-DTPGHEQYT-----RNMATGASTCDLAIILVDARYGV-QTQTRRHSYIASLLGIKHIVVAINKMDLNGFD  158 (222)
T ss_dssp             SSEEEEEE-ECCCSGGGH-----HHHHHHHTTCSEEEEEEETTTCS-CHHHHHHHHHHHHTTCCEEEEEEECTTTTTSC
T ss_pred             cceEEEEE-eccchhhhh-----hhhccccccCceEEEEeccccCc-ccchHHHHHHHHHcCCCEEEEEEEcccccccc
Confidence            56788887 999999999     99999987        9999997 99999999999999999999999999999876

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.64  E-value=3.8e-17  Score=137.35  Aligned_cols=81  Identities=21%  Similarity=0.327  Sum_probs=67.1

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCC------CCCchHHHHHHHHH
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESC------PQPQTSEHLAAIEI  174 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~------~~pQT~EHl~il~~  174 (207)
                      |.+...+..+     +.++.|+ +.|||.+|+     +||++|++        |||.+|+      ++|||+||+.+++.
T Consensus        73 ~~~~~~~~~~-----~~~i~ii-DtPGH~df~-----~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~  141 (239)
T d1f60a3          73 DIALWKFETP-----KYQVTVI-DAPGHRDFI-----KNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFT  141 (239)
T ss_dssp             SCSCEEEECS-----SEEEEEE-ECCCCTTHH-----HHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHH
T ss_pred             ccceeEeccC-----CEEEEEE-ECCCcHHHH-----HHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHH
Confidence            5555555544     5789988 999999999     99999988        8999873      47999999999999


Q ss_pred             cCCCeEEEEEecCCCCChhhHHHHHHHH
Q psy13818        175 MKLKHIIILQNKIDLVKEGQANEQHEQI  202 (207)
Q Consensus       175 lGI~~iIV~vNK~DlV~~~~~~~~~~eI  202 (207)
                      +||+++|||+||||++++++  ++|+++
T Consensus       142 ~gv~~iiv~iNKmD~~~~d~--~~~~~~  167 (239)
T d1f60a3         142 LGVRQLIVAVNKMDSVKWDE--SRFQEI  167 (239)
T ss_dssp             TTCCEEEEEEECGGGGTTCH--HHHHHH
T ss_pred             cCCCeEEEEEECCCCCCCCH--HHHHHH
Confidence            99999999999999998763  344444

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.62  E-value=2.5e-16  Score=128.44  Aligned_cols=86  Identities=15%  Similarity=0.282  Sum_probs=71.6

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeE
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHI  180 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~i  180 (207)
                      |.+.+++.     +.+.++.|+ +.|||.+|+     +||++|++        |||.+|+ ++||+||+.++..+|++++
T Consensus        56 ~~~~~~~~-----~~~~~i~ii-DtPGh~df~-----~~~~~~~~~aD~avlVvda~~Gv-~~qt~~~~~~~~~~gi~~i  123 (204)
T d2c78a3          56 NTAHVEYE-----TAKRHYSHV-DCPGHADYI-----KNMITGAAQMDGAILVVSAADGP-MPQTREHILLARQVGVPYI  123 (204)
T ss_dssp             SCEEEEEE-----CSSCEEEEE-ECCCSGGGH-----HHHHHHHTTCSSEEEEEETTTCC-CHHHHHHHHHHHHTTCCCE
T ss_pred             EeeEEEEE-----eCCeEEEEE-eCCCchhhH-----HHHHHHHHHCCEEEEEEECCCCC-cHHHHHHHHHHHHcCCCeE
Confidence            66666554     458899998 999999999     99999877        9999997 9999999999999999999


Q ss_pred             EEEEecCCCCChhh-HHHHHHHHHhhh
Q psy13818        181 IILQNKIDLVKEGQ-ANEQHEQIVKFV  206 (207)
Q Consensus       181 IV~vNK~DlV~~~~-~~~~~~eI~~~l  206 (207)
                      ||++||||++++++ .++..++|++++
T Consensus       124 iv~iNK~D~~~~~~~~~~~~~~i~~~l  150 (204)
T d2c78a3         124 VVFMNKVDMVDDPELLDLVEMEVRDLL  150 (204)
T ss_dssp             EEEEECGGGCCCHHHHHHHHHHHHHHH
T ss_pred             EEEEEecccCCCHHHHHHHHHHHHHHH
Confidence            99999999998543 344445666544

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.62  E-value=3.6e-17  Score=131.67  Aligned_cols=77  Identities=38%  Similarity=0.563  Sum_probs=69.7

Q ss_pred             cEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHH
Q psy13818        125 EKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQAN  196 (207)
Q Consensus       125 ~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~  196 (207)
                      .++.++ +.|||.+|+     +||++|+.        |||.+|++++||+||+.++..+|++++||++||||++++++..
T Consensus        86 r~~~ii-D~PGH~df~-----~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~vNK~Dl~~~~~~~  159 (205)
T d2qn6a3          86 RRISFI-DAPGHEVLM-----ATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEAL  159 (205)
T ss_dssp             EEEEEE-ECSCHHHHH-----HHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECGGGSCHHHHH
T ss_pred             EEEEEe-ccchHHHHH-----hhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeeccccCCCccchHHH
Confidence            467776 999999999     99999977        9999998899999999999999999999999999999999888


Q ss_pred             HHHHHHHhhhC
Q psy13818        197 EQHEQIVKFVQ  207 (207)
Q Consensus       197 ~~~~eI~~~l~  207 (207)
                      ..++++.++++
T Consensus       160 ~~~~~~~~~l~  170 (205)
T d2qn6a3         160 SQYRQIKQFTK  170 (205)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            88888887753

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.61  E-value=3.9e-16  Score=127.48  Aligned_cols=86  Identities=19%  Similarity=0.326  Sum_probs=70.1

Q ss_pred             ceEEEEeeCcccccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeE
Q psy13818        109 DLAKISLTNPVCTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHI  180 (207)
Q Consensus       109 Dla~i~L~~Pvc~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~i  180 (207)
                      |.+.+++..     .+.++.+. +.|||.+|+     +||++|+.        |||.+|+ +|||+||+.++..+|++++
T Consensus        55 ~~~~~~~~~-----~~~~~~~i-DtPGh~~f~-----~~~~~~~~~aD~allVVda~~G~-~~QT~~~~~~a~~~~~~~i  122 (196)
T d1d2ea3          55 NAAHVEYST-----AARHYAHT-DCPGHADYV-----KNMITGTAPLDGCILVVAANDGP-MPQTREHLLLARQIGVEHV  122 (196)
T ss_dssp             ECEEEEEEC-----SSCEEEEE-ECSSHHHHH-----HHHHHTSSCCSEEEEEEETTTCS-CHHHHHHHHHHHHTTCCCE
T ss_pred             CcceEEEEe-----ceeeEEee-cCcchHHHH-----HHHHHHHhhcCeEEEEEEcCCCC-chhHHHHHHHHHHhcCCcE
Confidence            445555543     46678876 999999999     99999877        9999997 9999999999999999999


Q ss_pred             EEEEecCCCCChhhH-HHHHHHHHhhh
Q psy13818        181 IILQNKIDLVKEGQA-NEQHEQIVKFV  206 (207)
Q Consensus       181 IV~vNK~DlV~~~~~-~~~~~eI~~~l  206 (207)
                      |||+||||++++++. +...+++++++
T Consensus       123 Iv~iNK~D~~~~~~~~~~i~~~i~~~l  149 (196)
T d1d2ea3         123 VVYVNKADAVQDSEMVELVELEIRELL  149 (196)
T ss_dssp             EEEEECGGGCSCHHHHHHHHHHHHHHH
T ss_pred             EEEEecccccccHHHHHHHHHHHHHHH
Confidence            999999999976543 33445676664

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.55  E-value=7.5e-16  Score=126.33  Aligned_cols=77  Identities=18%  Similarity=0.274  Sum_probs=65.8

Q ss_pred             CCcEEEEEEeecCcceeecccccccccccee--------eecCCCC------CCCchHHHHHHHHHcCCCeEEEEEecCC
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESC------PQPQTSEHLAAIEIMKLKHIIILQNKID  188 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~------~~pQT~EHl~il~~lGI~~iIV~vNK~D  188 (207)
                      .+.++.|+ +.|||.+|+     +||++|++        |||.+|+      +++||+||+.+++.+|++++||++||||
T Consensus        79 ~~~~i~ii-DtPGH~df~-----~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iNK~D  152 (224)
T d1jnya3          79 KKYFFTII-DAPGHRDFV-----KNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVNKMD  152 (224)
T ss_dssp             SSCEEEEC-CCSSSTTHH-----HHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEECGG
T ss_pred             CCceeEEe-eCCCcHHHH-----HHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEEccc
Confidence            46788888 999999999     88888877        9999984      4899999999999999999999999999


Q ss_pred             CCChhhHHHHHHHHHhh
Q psy13818        189 LVKEGQANEQHEQIVKF  205 (207)
Q Consensus       189 lV~~~~~~~~~~eI~~~  205 (207)
                      ++.+++.+++++++.+.
T Consensus       153 ~~~~~~~~~~~~~v~~~  169 (224)
T d1jnya3         153 LTEPPYDEKRYKEIVDQ  169 (224)
T ss_dssp             GSSSTTCHHHHHHHHHH
T ss_pred             CCCccccHHHHHHHHHH
Confidence            99766556666655443

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.55  E-value=1.7e-15  Score=127.20  Aligned_cols=81  Identities=16%  Similarity=0.215  Sum_probs=57.9

Q ss_pred             cccCCcEEEEEEeecCcceeecccccccccccee--------eecCCCC------CCCchHHHHHHHHHcCCCeEEEEEe
Q psy13818        120 CTEVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESC------PQPQTSEHLAAIEIMKLKHIIILQN  185 (207)
Q Consensus       120 c~~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~------~~pQT~EHl~il~~lGI~~iIV~vN  185 (207)
                      +.+.+.++.+. +.|||..|+     +||++|++        |||++|+      ++|||+||+.++..+|++++|+++|
T Consensus        97 ~~~~~~~i~~i-DtPGH~df~-----~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~iN  170 (245)
T d1r5ba3          97 FETEHRRFSLL-DAPGHKGYV-----TNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVIN  170 (245)
T ss_dssp             EECSSEEEEEC-CCCC----------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEEE
T ss_pred             cccccceeeee-cccccccch-----hhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEEE
Confidence            34456688887 999999999     99999987        8999985      3679999999999999999999999


Q ss_pred             cCCCCChhhHHHHHHHHHhhh
Q psy13818        186 KIDLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       186 K~DlV~~~~~~~~~~eI~~~l  206 (207)
                      |||++..++.+++|++|.+.+
T Consensus       171 KmD~~~~~~~e~~~~ei~~~l  191 (245)
T d1r5ba3         171 KMDEPSVQWSEERYKECVDKL  191 (245)
T ss_dssp             CTTSTTCSSCHHHHHHHHHHH
T ss_pred             cCCCCccchhHHHHHHHHHHH
Confidence            999997776677787776543

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.47  E-value=1.5e-14  Score=114.86  Aligned_cols=77  Identities=40%  Similarity=0.638  Sum_probs=69.8

Q ss_pred             cEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHH
Q psy13818        125 EKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQAN  196 (207)
Q Consensus       125 ~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~  196 (207)
                      .++.++ +.|||.+|+     +||.+|++        |++.+|++++||+||+.+++.+|++.+|||+||||++++++..
T Consensus        78 ~~~~~i-DtPGh~~f~-----~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~~  151 (195)
T d1kk1a3          78 RRVSFI-DAPGHEALM-----TTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKAL  151 (195)
T ss_dssp             EEEEEE-ECSSHHHHH-----HHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHHH
T ss_pred             eeEeee-ccchhhhhh-----HHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHHH
Confidence            357777 999999999     99998876        8999998789999999999999999999999999999999888


Q ss_pred             HHHHHHHhhhC
Q psy13818        197 EQHEQIVKFVQ  207 (207)
Q Consensus       197 ~~~~eI~~~l~  207 (207)
                      +.++++.++++
T Consensus       152 ~~~~~~~~~~~  162 (195)
T d1kk1a3         152 ENYRQIKEFIE  162 (195)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhc
Confidence            88999988763

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.88  E-value=1.1e-09  Score=88.89  Aligned_cols=64  Identities=22%  Similarity=0.214  Sum_probs=54.6

Q ss_pred             cCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        122 EVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       122 ~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      +.+.++.++ +.|||.+|.     +++..++.        |||.+|+ ++||.+|+.++..++++ +|||+||||+++.+
T Consensus        67 ~~~~~~~~i-DtPGh~~f~-----~~~~~~~~~~D~~ilVvda~~g~-~~~~~~~~~~~~~~~~p-~iivlNK~D~~~~~  138 (227)
T d1g7sa4          67 ETLPGLFFI-DTPGHEAFT-----TLRKRGGALADLAILIVDINEGF-KPQTQEALNILRMYRTP-FVVAANKIDRIHGW  138 (227)
T ss_dssp             GTCCEEEEE-CCCTTSCCT-----TSBCSSSBSCSEEEEEEETTTCC-CHHHHHHHHHHHHTTCC-EEEEEECGGGSTTC
T ss_pred             ccccccccc-cccceeccc-----ccchhcccccceEEEEEecccCc-ccchhHHHHHhhcCCCe-EEEEEECccCCCch
Confidence            345578887 999999999     66655544        9999997 99999999999999997 88999999998754

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=98.72  E-value=5.1e-09  Score=89.12  Aligned_cols=75  Identities=11%  Similarity=0.082  Sum_probs=61.0

Q ss_pred             cCCcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        122 EVNEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       122 ~~G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      |.|.++.++ +.|||-+|+     .+|.+|..        |||.+|+ ++||++|+..++..|++.++ ++||||...  
T Consensus        64 ~~~~~~n~i-DtPGh~dF~-----~e~~~al~~~D~avlvvda~~Gv-~~~t~~~~~~~~~~~~p~~i-~iNk~D~~~--  133 (267)
T d2dy1a2          64 FRGHRVFLL-DAPGYGDFV-----GEIRGALEAADAALVAVSAEAGV-QVGTERAWTVAERLGLPRMV-VVTKLDKGG--  133 (267)
T ss_dssp             ETTEEEEEE-ECCCSGGGH-----HHHHHHHHHCSEEEEEEETTTCS-CHHHHHHHHHHHHTTCCEEE-EEECGGGCC--
T ss_pred             ccccceeEE-ccCchhhhh-----hhhhhhhcccCceEEEeeccCCc-cchhHHHHHhhhhccccccc-ccccccccc--
Confidence            568899998 999999999     66655543        9999997 99999999999999999755 799999843  


Q ss_pred             hHHHHHHHHHhhh
Q psy13818        194 QANEQHEQIVKFV  206 (207)
Q Consensus       194 ~~~~~~~eI~~~l  206 (207)
                      ...+..+++++.+
T Consensus       134 ~~~~~l~~~~~~l  146 (267)
T d2dy1a2         134 DYYALLEDLRSTL  146 (267)
T ss_dssp             CHHHHHHHHHHHH
T ss_pred             cchhhhhhHHHHh
Confidence            2356677777654

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=98.71  E-value=3.2e-09  Score=82.45  Aligned_cols=66  Identities=26%  Similarity=0.346  Sum_probs=53.2

Q ss_pred             CcEEEEEEeecCcceeecccccccccccee--------eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhH
Q psy13818        124 NEKIALSRRVEKHWSLIEGTVTTKVLSTRK--------RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQA  195 (207)
Q Consensus       124 G~kiaIsR~V~gh~rligg~~~~nMiaGa~--------V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~  195 (207)
                      +.++.+. +.+||.+|+     ++|..++.        ++|.+|. ++||++|+..+..+|++ +|+|+||||+++.++.
T Consensus        58 ~~~~~~~-d~~g~~~~~-----~~~~~~l~~~d~~ilv~d~~~g~-~~~~~~~~~~~~~~~~p-~iiv~NKiD~~~~~~~  129 (179)
T d1wb1a4          58 NYRITLV-DAPGHADLI-----RAVVSAADIIDLALIVVDAKEGP-KTQTGEHMLILDHFNIP-IIVVITKSDNAGTEEI  129 (179)
T ss_dssp             TEEEEEC-CCSSHHHHH-----HHHHHHTTSCCEEEEEEETTTCS-CHHHHHHHHHHHHTTCC-BCEEEECTTSSCHHHH
T ss_pred             Ccccccc-ccccccccc-----cchhhhhhhcccccccccccccc-chhhhhhhhhhhhcCCc-ceeccccccccCHHHH
Confidence            3356665 888999999     66655433        7899996 99999999999999998 7788999999998754


Q ss_pred             HH
Q psy13818        196 NE  197 (207)
Q Consensus       196 ~~  197 (207)
                      ..
T Consensus       130 ~~  131 (179)
T d1wb1a4         130 KR  131 (179)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.60  E-value=2.4e-08  Score=85.50  Aligned_cols=83  Identities=16%  Similarity=0.146  Sum_probs=65.2

Q ss_pred             cccCCcEEEEEEeecCcceeeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHH
Q psy13818        120 CTEVNEKIALSRRVEKHWSLIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQAN  196 (207)
Q Consensus       120 c~~~G~kiaIsR~V~gh~rligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~  196 (207)
                      |.|.+.++-|. +.|||..|+|-+.. -...++|.  |+|.+|+ ++||+.....++..+++ .|+++||||...-+. .
T Consensus        66 ~~~~~~~~n~i-DtPG~~dF~~e~~~~l~~~D~avlVvda~~Gv-~~~T~~~w~~a~~~~lP-~i~fINKmDr~~ad~-~  141 (276)
T d2bv3a2          66 CFWKDHRINII-DAPGHVDFTIEVERSMRVLDGAIVVFDSSQGV-EPQSETVWRQAEKYKVP-RIAFANKMDKTGADL-W  141 (276)
T ss_dssp             EEETTEEEEEE-CCCSSSSCSTTHHHHHHHCCEEEEEEETTTSS-CHHHHHHHHHHHTTTCC-EEEEEECTTSTTCCH-H
T ss_pred             eccCCeEEEEe-cCCchhhhHHHHHHHHHhhhheEEeccccCCc-chhHHHHHHHHHHcCCC-EEEEEeccccccccc-c
Confidence            45678899998 99999999943333 23334444  9999998 99999999999999999 558899999976553 5


Q ss_pred             HHHHHHHhhh
Q psy13818        197 EQHEQIVKFV  206 (207)
Q Consensus       197 ~~~~eI~~~l  206 (207)
                      +..++|++-|
T Consensus       142 ~~l~ei~~~l  151 (276)
T d2bv3a2         142 LVIRTMQERL  151 (276)
T ss_dssp             HHHHHHHHTT
T ss_pred             hhHHHHHHHh
Confidence            6778887755

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.14  E-value=6.9e-07  Score=78.20  Aligned_cols=65  Identities=18%  Similarity=0.080  Sum_probs=51.9

Q ss_pred             CCcEEEEEEeecCcceeeccccc-ccccccee--eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCC
Q psy13818        123 VNEKIALSRRVEKHWSLIEGTVT-TKVLSTRK--RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLV  190 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rligg~~~-~nMiaGa~--V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV  190 (207)
                      .+.++-|+ +.|||-+|++-+.. -...+||.  |||.||+ ++||++|+..+...+++ .|+++||||..
T Consensus        94 ~~~~inli-DtPGh~dF~~ev~~al~~~D~allVVda~eGv-~~qT~~~~~~a~~~~~p-~i~viNKiDr~  161 (341)
T d1n0ua2          94 NSFLINLI-DSPGHVDFSSEVTAALRVTDGALVVVDTIEGV-CVQTETVLRQALGERIK-PVVVINKVDRA  161 (341)
T ss_dssp             SEEEEEEE-CCCCCCSSCHHHHHHHHTCSEEEEEEETTTBS-CHHHHHHHHHHHHTTCE-EEEEEECHHHH
T ss_pred             cceEEEEE-cCCCcHHHHHHHHHHHhhcCceEEEEecccCc-chhHHHHHHHHHHcCCC-eEEEEECcccc
Confidence            34467777 99999999953333 34456666  9999997 99999999999999996 56779999963

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=97.65  E-value=4e-05  Score=58.51  Aligned_cols=51  Identities=8%  Similarity=0.172  Sum_probs=44.0

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~l  206 (207)
                      ||++++. .+|+.+++..++..+++ ++||+||+|+..+++.++..+++++.+
T Consensus       113 iD~~~~~-~~~~~~~~~~l~~~~~p-iivv~NK~D~~~~~~~~~~~~~~~~~l  163 (195)
T d1svia_         113 VDLRHAP-SNDDVQMYEFLKYYGIP-VIVIATKADKIPKGKWDKHAKVVRQTL  163 (195)
T ss_dssp             EETTSCC-CHHHHHHHHHHHHTTCC-EEEEEECGGGSCGGGHHHHHHHHHHHH
T ss_pred             hhccccc-cccccccccccccccCc-ceechhhccccCHHHHHHHHHHHHHHh
Confidence            8999996 99999999999999987 999999999998877767667666654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=96.99  E-value=6.1e-05  Score=58.18  Aligned_cols=66  Identities=11%  Similarity=0.016  Sum_probs=46.6

Q ss_pred             EEEEEEeecCcceeecccccccccccee-------------eecCCCCCCCchHHHHHHHHH-----cCCCeEEEEEecC
Q psy13818        126 KIALSRRVEKHWSLIEGTVTTKVLSTRK-------------RTGNESCPQPQTSEHLAAIEI-----MKLKHIIILQNKI  187 (207)
Q Consensus       126 kiaIsR~V~gh~rligg~~~~nMiaGa~-------------V~A~eg~~~pQT~EHl~il~~-----lGI~~iIV~vNK~  187 (207)
                      +..+.-+.+||-.+.     .+|.+++.             +|+..+. +||+.+|..+...     ++++ .++++||+
T Consensus        95 ~~~~~id~~g~~~~~-----~~~~~~~~~~~~~~~~~~v~vvd~~~~~-~~~~~~~~~l~~~~~~~~~~~~-~ivvinK~  167 (244)
T d1yrba1          95 NDYVLIDTPGQMETF-----LFHEFGVRLMENLPYPLVVYISDPEILK-KPNDYCFVRFFALLIDLRLGAT-TIPALNKV  167 (244)
T ss_dssp             CSEEEEECCSSHHHH-----HHSHHHHHHHHTSSSCEEEEEECGGGCC-SHHHHHHHHHHHHHHHHHHTSC-EEEEECCG
T ss_pred             cceeeeccccchhHH-----HHHHHHHHHHhhccCceEEEEecccccc-CchhHhhHHHHHHHHHHHhCCC-ceeeeecc
Confidence            345555889998877     55555432             6777776 9999988877654     4444 47889999


Q ss_pred             CCCChhhHHHH
Q psy13818        188 DLVKEGQANEQ  198 (207)
Q Consensus       188 DlV~~~~~~~~  198 (207)
                      |+++.++....
T Consensus       168 D~~~~~~~~~~  178 (244)
T d1yrba1         168 DLLSEEEKERH  178 (244)
T ss_dssp             GGCCHHHHHHH
T ss_pred             ccccHHHHHHH
Confidence            99998755443

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=96.43  E-value=0.0011  Score=49.15  Aligned_cols=38  Identities=13%  Similarity=0.174  Sum_probs=32.3

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      ++++++. .+|..+++..++..+++ +|+|+||+|+.++.
T Consensus        88 ~~~~~~~-~~~~~~~~~~l~~~~~p-viiv~NK~Dl~~~~  125 (171)
T d1mkya1          88 VDGKRGI-TKEDESLADFLRKSTVD-TILVANKAENLREF  125 (171)
T ss_dssp             EETTTCC-CHHHHHHHHHHHHHTCC-EEEEEESCCSHHHH
T ss_pred             ecccccc-ccccccccccccccccc-ccccchhhhhhhhh
Confidence            7778886 88999999999999986 78899999998654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=95.79  E-value=0.0029  Score=47.05  Aligned_cols=38  Identities=18%  Similarity=0.142  Sum_probs=33.2

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      +|++.+. .+|+++++.+++..+.+ +|+++||+|++...
T Consensus        99 ~d~~~~~-~~~~~~~~~~~~~~~~~-~i~v~nK~D~~~~~  136 (186)
T d1mkya2          99 LDATQGI-TRQDQRMAGLMERRGRA-SVVVFNKWDLVVHR  136 (186)
T ss_dssp             EETTTCC-CHHHHHHHHHHHHTTCE-EEEEEECGGGSTTG
T ss_pred             ecccccc-hhhHHHHHHHHHHcCCc-eeeeccchhhhcch
Confidence            8899986 99999999999999986 57889999997644

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=95.57  E-value=0.0085  Score=44.52  Aligned_cols=39  Identities=18%  Similarity=0.129  Sum_probs=30.2

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCC-CeEEEEEecCCCCChh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKL-KHIIILQNKIDLVKEG  193 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI-~~iIV~vNK~DlV~~~  193 (207)
                      +|++++. .++..+....++..+- ..+|+|+||+|+.+..
T Consensus        92 ~D~~~~~-~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~  131 (178)
T d1wf3a1          92 VDLRHPP-TPEDELVARALKPLVGKVPILLVGNKLDAAKYP  131 (178)
T ss_dssp             EETTSCC-CHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH
T ss_pred             echhhhh-cccccchhhheeccccchhhhhhhcccccccCH
Confidence            8999885 7777777777765543 4699999999998754

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=95.46  E-value=0.013  Score=42.99  Aligned_cols=34  Identities=21%  Similarity=0.273  Sum_probs=28.5

Q ss_pred             CCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        158 ESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       158 eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      .+. ++|..+++..++..+++ +|+|+||+|+++..
T Consensus       104 ~~~-~~~d~~~~~~l~~~~~p-~iiv~NK~D~~~~~  137 (184)
T d2cxxa1         104 RGE-IPIDVEFYQFLRELDIP-TIVAVNKLDKIKNV  137 (184)
T ss_dssp             TTC-CCHHHHHHHHHHHTTCC-EEEEEECGGGCSCH
T ss_pred             ccc-cHHHHHHHHHHHHcCCC-EEEEEeeeehhhhH
Confidence            354 88999999999999987 88899999998654

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=93.20  E-value=0.027  Score=45.66  Aligned_cols=40  Identities=25%  Similarity=0.262  Sum_probs=30.3

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHH
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANE  197 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~  197 (207)
                      +||..    |.|.+.-.+.+++.-++.|+|+||+||++.+..++
T Consensus        23 ~DaR~----P~ss~~~~l~~~~~~Kp~IlVlNK~DLv~~~~~~~   62 (273)
T d1puja_          23 VDARI----PMSSRNPMIEDILKNKPRIMLLNKADKADAAVTQQ   62 (273)
T ss_dssp             EETTS----TTTTSCHHHHHHCSSSCEEEEEECGGGSCHHHHHH
T ss_pred             EECCC----CCCCCCHHHHHHHcCCCeEEEEECccCCchHHHHH
Confidence            67764    45555566778888899999999999999764433

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=91.13  E-value=0.22  Score=35.41  Aligned_cols=51  Identities=12%  Similarity=0.110  Sum_probs=34.5

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHHHHHhhh
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHEQIVKFV  206 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~eI~~~l  206 (207)
                      .++..+. ..|..+.+..+...+. .+++++||+|+++..+.....+++++.+
T Consensus       106 ~~~~~~~-~~~~~~~~~~~~~~~~-~~~~v~~k~D~~~~~~~~~~~~~~~~~l  156 (188)
T d1puia_         106 MDIRHPL-KDLDQQMIEWAVDSNI-AVLVLLTKADKLASGARKAQLNMVREAV  156 (188)
T ss_dssp             EETTSCC-CHHHHHHHHHHHHTTC-CEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred             ecccccc-hhHHHHHHHHhhhccc-cccchhhhhhccCHHHHHHHHHHHHHHH
Confidence            4455554 6666666666666655 5777899999999876666666665543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=90.41  E-value=0.12  Score=37.91  Aligned_cols=25  Identities=20%  Similarity=0.416  Sum_probs=18.7

Q ss_pred             CeEEEEEecCCCCChhhHHHHHHHH
Q psy13818        178 KHIIILQNKIDLVKEGQANEQHEQI  202 (207)
Q Consensus       178 ~~iIV~vNK~DlV~~~~~~~~~~eI  202 (207)
                      +.+|+|+||+|+.+.++.++..+++
T Consensus       114 ~p~iiv~NK~D~~~~~~~~~~~~~~  138 (180)
T d1udxa2         114 RPSLVALNKVDLLEEEAVKALADAL  138 (180)
T ss_dssp             SCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             hhhhhhhhhhhhhhHHHHHHHHHHH
Confidence            4689999999999987665544443

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=88.51  E-value=0.22  Score=40.60  Aligned_cols=35  Identities=20%  Similarity=0.359  Sum_probs=25.1

Q ss_pred             CchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHH
Q psy13818        163 PQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQ  198 (207)
Q Consensus       163 pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~  198 (207)
                      ..--+.+.++...|++ .||++||+||+++++.++.
T Consensus        28 ~~idR~Lv~a~~~~i~-pvIvlnK~DL~~~~~~~~~   62 (231)
T d1t9ha2          28 ALLDRFLVLVEANDIQ-PIICITKMDLIEDQDTEDT   62 (231)
T ss_dssp             HHHHHHHHHHHTTTCE-EEEEEECGGGCCCHHHHHH
T ss_pred             HHHHHHHHHHHHcCCC-EEEEEecccccccHHHHHH
Confidence            3444667778888885 6778999999986644433

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.12  E-value=0.3  Score=39.58  Aligned_cols=31  Identities=26%  Similarity=0.397  Sum_probs=23.6

Q ss_pred             HHHHHHHHHcCCCeEEEEEecCCCCChhhHHH
Q psy13818        166 SEHLAAIEIMKLKHIIILQNKIDLVKEGQANE  197 (207)
Q Consensus       166 ~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~  197 (207)
                      -+-+.++...|++ .+|++||+||+++++.++
T Consensus        31 dR~Lv~a~~~~i~-pvIvlnK~DL~~~~~~~~   61 (225)
T d1u0la2          31 DKFLVLAEKNELE-TVMVINKMDLYDEDDLRK   61 (225)
T ss_dssp             HHHHHHHHHTTCE-EEEEECCGGGCCHHHHHH
T ss_pred             HHHHHHHHHcCCC-EEEEEeCcccCCHHHHHH
Confidence            3457778889995 777799999998775443

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.50  E-value=0.29  Score=35.91  Aligned_cols=69  Identities=19%  Similarity=0.091  Sum_probs=37.2

Q ss_pred             CCcEEEEEEeecCcceeec-cccc-c---cccccee--eecCCCC-CCCchHHHHH----HHHH---cCCCeEEEEEecC
Q psy13818        123 VNEKIALSRRVEKHWSLIE-GTVT-T---KVLSTRK--RTGNESC-PQPQTSEHLA----AIEI---MKLKHIIILQNKI  187 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rlig-g~~~-~---nMiaGa~--V~A~eg~-~~pQT~EHl~----il~~---lGI~~iIV~vNK~  187 (207)
                      .|.++.+. +.+||.++-+ +.-. .   .-..++.  +++.... ...++.+++.    +++.   -+++ +++++||+
T Consensus        44 ~~~~~~l~-D~~g~~~~~~~~~~~~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~p-iiiv~NK~  121 (209)
T d1nrjb_          44 DGSGVTLV-DFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGID-ILIACNKS  121 (209)
T ss_dssp             GGSSCEEE-ECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCC-EEEEEECT
T ss_pred             CCeEEEEE-ecccccchhhHHHHHHHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCC-eEEEEEee
Confidence            35556665 8888876543 1111 1   1112222  6655432 3567777652    2222   2344 78889999


Q ss_pred             CCCChh
Q psy13818        188 DLVKEG  193 (207)
Q Consensus       188 DlV~~~  193 (207)
                      |+.+..
T Consensus       122 D~~~~~  127 (209)
T d1nrjb_         122 ELFTAR  127 (209)
T ss_dssp             TSTTCC
T ss_pred             cccccC
Confidence            998743

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=86.81  E-value=0.77  Score=33.33  Aligned_cols=69  Identities=12%  Similarity=0.041  Sum_probs=35.0

Q ss_pred             CCcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHH-HHH--cCCCeEEEEEecCCCCCh
Q psy13818        123 VNEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAA-IEI--MKLKHIIILQNKIDLVKE  192 (207)
Q Consensus       123 ~G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~i-l~~--lGI~~iIV~vNK~DlV~~  192 (207)
                      .+-++.+. +.+|++++-. +...-+..+++.  +|+++.......++++.- ++.  ..-..++|+.||+|+.+.
T Consensus        59 ~~~~~~i~-D~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~  133 (182)
T d1moza_          59 KNLKLNVW-DLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGA  133 (182)
T ss_dssp             TTEEEEEE-EEC----CCTTGGGTTTTEEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTC
T ss_pred             CCEEEEEE-ecccccccchhHHhhhccceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeeccccc
Confidence            34456665 8888887754 333322334433  777766422334444322 221  123578899999999763

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.30  E-value=0.62  Score=32.76  Aligned_cols=43  Identities=21%  Similarity=0.298  Sum_probs=32.2

Q ss_pred             eecCCCCCCCchHHHHHHHHHcCCCeEEEEEecCCCCChhhHHHHHH
Q psy13818        154 RTGNESCPQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEGQANEQHE  200 (207)
Q Consensus       154 V~A~eg~~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~~~~~~~~  200 (207)
                      +|++++. .   .++..+...+.-..+++++||+|+.+....++..+
T Consensus        88 ~d~~~~~-~---~~~~~~~~~~~~~~~i~~~~k~d~~~~~~~~~~~~  130 (160)
T d1xzpa2          88 LDASSPL-D---EEDRKILERIKNKRYLVVINKVDVVEKINEEEIKN  130 (160)
T ss_dssp             EETTSCC-C---HHHHHHHHHHTTSSEEEEEEECSSCCCCCHHHHHH
T ss_pred             EeCCCCc-c---hhhhhhhhhcccccceeeeeeccccchhhhHHHHH
Confidence            7887765 3   45667777888899999999999998654444443

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=83.44  E-value=0.17  Score=35.95  Aligned_cols=40  Identities=18%  Similarity=0.134  Sum_probs=24.0

Q ss_pred             eecCCCC-CCCchHHHHHHHHHcCCCeEEEEEecCCCCChh
Q psy13818        154 RTGNESC-PQPQTSEHLAAIEIMKLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       154 V~A~eg~-~~pQT~EHl~il~~lGI~~iIV~vNK~DlV~~~  193 (207)
                      +++.+.. ...+...+..+.+.-.-..+|+|+||+|+++++
T Consensus        88 ~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~  128 (161)
T d2gj8a1          88 VDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGET  128 (161)
T ss_dssp             EETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCC
T ss_pred             eccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhH
Confidence            6666654 122333233444444456799999999987653

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.06  E-value=0.48  Score=35.21  Aligned_cols=18  Identities=22%  Similarity=0.263  Sum_probs=13.8

Q ss_pred             CCCeEEEEEecCCCCChh
Q psy13818        176 KLKHIIILQNKIDLVKEG  193 (207)
Q Consensus       176 GI~~iIV~vNK~DlV~~~  193 (207)
                      +-..++||.||+|+.+..
T Consensus       107 ~~~pilvv~NK~Dl~~a~  124 (207)
T d2fh5b1         107 NSPSLLIACNKQDIAMAK  124 (207)
T ss_dssp             TCCEEEEEEECTTSTTCC
T ss_pred             cCCcEEEEEECcccCCCC
Confidence            344688999999998743

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=82.55  E-value=0.4  Score=34.45  Aligned_cols=72  Identities=15%  Similarity=0.102  Sum_probs=38.5

Q ss_pred             CcEEEEEEeecCcceeec-ccccccccccee--eecCCCCCCCchHHHHHHH-HHcC--CCeEEEEEecCCCCChhhHH
Q psy13818        124 NEKIALSRRVEKHWSLIE-GTVTTKVLSTRK--RTGNESCPQPQTSEHLAAI-EIMK--LKHIIILQNKIDLVKEGQAN  196 (207)
Q Consensus       124 G~kiaIsR~V~gh~rlig-g~~~~nMiaGa~--V~A~eg~~~pQT~EHl~il-~~lG--I~~iIV~vNK~DlV~~~~~~  196 (207)
                      +-++.+. +.+|++++-. |.-.-+..+++.  +|+++.....+.+++..-. ....  -..++|+.||+|+.+..+..
T Consensus        59 ~~~~~i~-d~~g~~~~~~~~~~~~~~~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~~~~  136 (176)
T d1fzqa_          59 GFKLNVW-DIGGQRKIRPYWRSYFENTDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAAPAS  136 (176)
T ss_dssp             TEEEEEE-ECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCCCHH
T ss_pred             CeeEeEe-eccccccchhHHHHHhhccceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccccHH
Confidence            3455554 6777776643 322222334443  7776543234455544332 2222  12489999999998765433