Psyllid ID: psy13822

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120---
Protein Sequence
MPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK
Secondary Structure (PSIPRED)
cccccccccEEEEEccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHcccEEEEcEEccEEEEEcccccccccHHHHHHHHHHHHHHHHccccccccccccEEEEEccccccccEEEEEcc
Secondary Structure Prediction (SSPRO)
ccccHHHHcEEEEEEEEEccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccEEEEEEEccEEEEEEccccccccHHHHHHHHHHHHHHHHccEEEEccccccEEEEEEEccccEEEEEEccc
Coil and Loop (DISEMBL)
mpvdpedfreVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYmvvgglpvripdhADQIATMALDLLHHsgrfkirhlpytplrlriglhtgrpvskhlrkk
Flexible Loop (DISEMBL)
MPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHlpytplrlriglhtgrpvskhlrkk
Low Complexity Region (SEG)
MPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK
Disordered region (IsUnstruct)
*******FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHT***********
Disordered Region (DISOPRED)
*PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK
Disordered Region (DISEMBL)
MPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGR*********
Disordered Region (DISPRO)
*PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	123	2.2.26 [Sep-21-2011]
P55203	1110	Retinal guanylyl cyclase	yes	N/A	0.910	0.100	0.681	6e-39
O19179	1109	Retinal guanylyl cyclase	yes	N/A	0.910	0.100	0.681	7e-39
Q02846	1103	Retinal guanylyl cyclase	yes	N/A	0.910	0.101	0.663	2e-38
P52785	1108	Guanylyl cyclase GC-E OS=	yes	N/A	0.902	0.100	0.678	3e-38
P51842	1108	Retinal guanylyl cyclase	yes	N/A	0.934	0.103	0.663	4e-38
P51840	1108	Guanylyl cyclase GC-E OS=	no	N/A	0.902	0.100	0.669	6e-38
P51841	1108	Retinal guanylyl cyclase	no	N/A	0.934	0.103	0.655	7e-38
O02740	1103	Retinal guanylyl cyclase	no	N/A	0.934	0.104	0.655	8e-38
Q5SDA5	1108	Retinal guanylyl cyclase	no	N/A	0.934	0.103	0.655	1e-37
P51839	1110	Olfactory guanylyl cyclas	no	N/A	0.902	0.1	0.633	7e-36

>sp|P55203|GUC2D_BOVIN Retinal guanylyl cyclase 1 OS=Bos taurus GN=GUCY2D PE=1 SV=1

 Score =  159 bits (401), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 77/113 (68%), Positives = 90/113 (79%), Gaps = 1/113 (0%)

Query: 2   PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
           PV+PE F EVT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I +++VYKVETIGD
Sbjct: 875 PVEPEYFEEVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGSHDVYKVETIGD 934

Query: 62  AYMVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
           AYMV  GLP R    HA +IA MALD+L   G F++RH+P  P+R+RIGLH+G
Sbjct: 935 AYMVASGLPQRNGHRHAAEIANMALDILSAVGTFRMRHMPEVPVRIRIGLHSG 987

Probably plays a specific functional role in the rods and/or cones of photoreceptors. It may be the enzyme involved in the resynthesis of cGMP required for recovery of the dark state after phototransduction.
Bos taurus (taxid: 9913)
EC: 4EC: .EC: 6EC: .EC: 1EC: .EC: 2

>sp|O19179|GUC2D_CANFA Retinal guanylyl cyclase 1 OS=Canis familiaris GN=GUCY2D PE=2 SV=1

 Score =  158 bits (400), Expect = 7e-39,   Method: Composition-based stats.
 Identities = 77/113 (68%), Positives = 90/113 (79%), Gaps = 1/113 (0%)

Query: 2   PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
           PV+PE F EVT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I +++VYKVETIGD
Sbjct: 874 PVEPEYFEEVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGSHDVYKVETIGD 933

Query: 62  AYMVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
           AYMV  GLP R    HA +IA MALD+L   G F++RH+P  P+R+RIGLH+G
Sbjct: 934 AYMVASGLPQRNGQRHAAEIANMALDILSAVGSFRMRHMPEVPVRIRIGLHSG 986

Canis familiaris (taxid: 9615)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|Q02846|GUC2D_HUMAN Retinal guanylyl cyclase 1 OS=Homo sapiens GN=GUCY2D PE=1 SV=2

 Score =  157 bits (396), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 75/113 (66%), Positives = 90/113 (79%), Gaps = 1/113 (0%)

Query: 2   PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
           PV+PE F +VT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I +++VYKVETIGD
Sbjct: 870 PVEPEYFEQVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGSHDVYKVETIGD 929

Query: 62  AYMVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
           AYMV  GLP R    HA +IA M+LD+L   G F++RH+P  P+R+RIGLH+G
Sbjct: 930 AYMVASGLPQRNGQRHAAEIANMSLDILSAVGTFRMRHMPEVPVRIRIGLHSG 982

Probably plays a specific functional role in the rods and/or cones of photoreceptors. It may be the enzyme involved in the resynthesis of cGMP required for recovery of the dark state after phototransduction.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P52785|GUC2E_MOUSE Guanylyl cyclase GC-E OS=Mus musculus GN=Gucy2e PE=2 SV=2

 Score =  156 bits (395), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/112 (67%), Positives = 89/112 (79%), Gaps = 1/112 (0%)

Query: 3   VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA 62
           V+PE F EVT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I A++VYKVETIGDA
Sbjct: 874 VEPEYFEEVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGAHDVYKVETIGDA 933

Query: 63  YMVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
           YMV  GLP R    HA +IA M+LD+L   G F++RH+P  P+R+RIGLH+G
Sbjct: 934 YMVASGLPQRNGQRHAAEIANMSLDILSAVGSFRMRHMPEVPVRIRIGLHSG 985

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P51842|GUC2F_RAT Retinal guanylyl cyclase 2 OS=Rattus norvegicus GN=Gucy2f PE=2 SV=1

 Score =  156 bits (394), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 77/116 (66%), Positives = 90/116 (77%), Gaps = 1/116 (0%)

Query: 3   VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA 62
           V+PE F  VT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I +++VYKVETIGDA
Sbjct: 875 VEPEGFDLVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGSHDVYKVETIGDA 934

Query: 63  YMVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVS 117
           YMV  GLP R    HA +IA M+LD+L   G FK+RH+P  P+R+RIGLHTG  V+
Sbjct: 935 YMVASGLPKRNGSRHAAEIANMSLDILSSVGTFKMRHMPEVPVRIRIGLHTGPVVA 990

Probably plays a specific functional role in the rods and/or cones of photoreceptors. It may be the enzyme involved in the resynthesis of cGMP required for recovery of the dark state after phototransduction.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P51840|GUC2E_RAT Guanylyl cyclase GC-E OS=Rattus norvegicus GN=Gucy2e PE=1 SV=1

 Score =  155 bits (392), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 75/112 (66%), Positives = 89/112 (79%), Gaps = 1/112 (0%)

Query: 3   VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA 62
           V+PE F EVT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I +++VYKVETIGDA
Sbjct: 874 VEPEYFEEVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGSHDVYKVETIGDA 933

Query: 63  YMVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
           YMV  GLP R    HA +IA M+LD+L   G F++RH+P  P+R+RIGLH+G
Sbjct: 934 YMVASGLPQRNGQRHAAEIANMSLDILSAVGSFRMRHMPEVPVRIRIGLHSG 985

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P51841|GUC2F_HUMAN Retinal guanylyl cyclase 2 OS=Homo sapiens GN=GUCY2F PE=2 SV=2

 Score =  155 bits (392), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 76/116 (65%), Positives = 90/116 (77%), Gaps = 1/116 (0%)

Query: 3   VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA 62
           V+PE F  VT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I +++VYKVETIGDA
Sbjct: 875 VEPEGFDLVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGSHDVYKVETIGDA 934

Query: 63  YMVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVS 117
           YMV  GLP R    HA +IA M+LD+L   G FK+RH+P  P+R+RIGLH+G  V+
Sbjct: 935 YMVASGLPKRNGSRHAAEIANMSLDILSSVGTFKMRHMPEVPVRIRIGLHSGPVVA 990

Probably plays a specific functional role in the rods and/or cones of photoreceptors. It may be the enzyme involved in the resynthesis of cGMP required for recovery of the dark state after phototransduction.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|O02740|GUC2F_BOVIN Retinal guanylyl cyclase 2 OS=Bos taurus GN=GUCY2F PE=2 SV=1

 Score =  155 bits (391), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 76/116 (65%), Positives = 90/116 (77%), Gaps = 1/116 (0%)

Query: 3   VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA 62
           V+PE F  VT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I +++VYKVETIGDA
Sbjct: 875 VEPEGFDLVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGSHDVYKVETIGDA 934

Query: 63  YMVVGGLPVRIP-DHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVS 117
           YMV  GLP R    HA +IA M+LD+L   G FK+RH+P  P+R+RIGLH+G  V+
Sbjct: 935 YMVASGLPKRNGMRHAAEIANMSLDILSSVGTFKMRHMPEVPVRIRIGLHSGPVVA 990

Probably plays a specific functional role in the rods and/or cones of photoreceptors. It may be the enzyme involved in the resynthesis of cGMP required for recovery of the dark state after phototransduction.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|Q5SDA5|GUC2F_MOUSE Retinal guanylyl cyclase 2 OS=Mus musculus GN=Gucy2f PE=2 SV=1

 Score =  154 bits (390), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 76/116 (65%), Positives = 90/116 (77%), Gaps = 1/116 (0%)

Query: 3   VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA 62
           V+PE F  VT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I +++VYKVETIGDA
Sbjct: 875 VEPEGFDLVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGSHDVYKVETIGDA 934

Query: 63  YMVVGGLPVRI-PDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVS 117
           YMV  GLP R    HA +IA M+LD+L   G FK+RH+P  P+R+RIGLH+G  V+
Sbjct: 935 YMVASGLPKRNGSRHAAEIANMSLDILSSVGTFKMRHMPEVPVRIRIGLHSGPVVA 990

Probably plays a specific functional role in the rods and/or cones of photoreceptors. It may be the enzyme involved in the resynthesis of cGMP required for recovery of the dark state after phototransduction.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

>sp|P51839|GUC2D_RAT Olfactory guanylyl cyclase GC-D OS=Rattus norvegicus GN=Gucy2d PE=2 SV=1

 Score =  149 bits (375), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 71/112 (63%), Positives = 89/112 (79%), Gaps = 1/112 (0%)

Query: 3   VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA 62
           V+PE F +VTIYFSDIVGFTTISA S P EVV  LNDLYT FDA +++++VYKVETIGDA
Sbjct: 884 VEPEYFDQVTIYFSDIVGFTTISALSEPIEVVGFLNDLYTMFDAVLDSHDVYKVETIGDA 943

Query: 63  YMVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
           YMV  GLP R  + HA +IA MAL++L ++G F++RH P  P+R+R GLH+G
Sbjct: 944 YMVASGLPRRNGNRHAAEIANMALEILSYAGNFRMRHAPDVPIRVRAGLHSG 995

May function directly in odor recognition or in modulating the sensitivity of a subpopulation of sensory neurons to specific odors.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
270008090	1502	hormone receptor 83 [Tribolium castaneum	0.918	0.075	0.911	2e-57
189237324	1444	PREDICTED: similar to CG34357 CG34357-PA	0.918	0.078	0.911	2e-57
340720297	1423	PREDICTED: hypothetical protein LOC10064	0.918	0.079	0.893	3e-55
345491231	911	PREDICTED: retinal guanylyl cyclase 2-li	0.918	0.124	0.911	4e-55
350417566	1404	PREDICTED: hypothetical protein LOC10074	0.918	0.080	0.893	4e-55
383863186	1392	PREDICTED: retinal guanylyl cyclase 2-li	0.918	0.081	0.893	1e-54
307207168	1377	Retinal guanylyl cyclase 2 [Harpegnathos	0.918	0.082	0.884	1e-54
307182371	1382	Retinal guanylyl cyclase 2 [Camponotus f	0.918	0.081	0.884	5e-54
332019199	1379	Retinal guanylyl cyclase 2 [Acromyrmex e	0.918	0.081	0.893	7e-54
322789340	492	hypothetical protein SINV_07693 [Solenop	0.918	0.229	0.893	1e-53

>gi|270008090|gb|EFA04538.1| hormone receptor 83 [Tribolium castaneum]

 Score =  226 bits (575), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 103/113 (91%), Positives = 109/113 (96%)

Query: 1   MPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIG 60
           MPVDPE+F EVTIYFSDIVGFTTISA+STPF+VVDLLNDLYTCFDATINAYNVYKVETIG
Sbjct: 821 MPVDPEEFEEVTIYFSDIVGFTTISAHSTPFQVVDLLNDLYTCFDATINAYNVYKVETIG 880

Query: 61  DAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
           DAYMVVGGLPVR+PDHA+QIATMALDLLH SGRF+I HLP TPLRLRIGLHTG
Sbjct: 881 DAYMVVGGLPVRVPDHAEQIATMALDLLHQSGRFRITHLPGTPLRLRIGLHTG 933

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237324|ref|XP_972984.2| PREDICTED: similar to CG34357 CG34357-PA [Tribolium castaneum]

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 103/113 (91%), Positives = 109/113 (96%)

Query: 1   MPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIG 60
           MPVDPE+F EVTIYFSDIVGFTTISA+STPF+VVDLLNDLYTCFDATINAYNVYKVETIG
Sbjct: 842 MPVDPEEFEEVTIYFSDIVGFTTISAHSTPFQVVDLLNDLYTCFDATINAYNVYKVETIG 901

Query: 61  DAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
           DAYMVVGGLPVR+PDHA+QIATMALDLLH SGRF+I HLP TPLRLRIGLHTG
Sbjct: 902 DAYMVVGGLPVRVPDHAEQIATMALDLLHQSGRFRITHLPGTPLRLRIGLHTG 954

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340720297|ref|XP_003398577.1| PREDICTED: hypothetical protein LOC100642611 [Bombus terrestris]

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 101/113 (89%), Positives = 107/113 (94%)

Query: 1    MPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIG 60
            MPVDPE+FREVTIYFSDIVGFTTISA+STPF+VVDLLNDLYTCFDATINAY VYKVETIG
Sbjct: 929  MPVDPEEFREVTIYFSDIVGFTTISAHSTPFQVVDLLNDLYTCFDATINAYTVYKVETIG 988

Query: 61   DAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
            DAYMVVGG PVRIPDHA QIATMALDLLH SG+FK++HLP T LRLRIGLHTG
Sbjct: 989  DAYMVVGGCPVRIPDHASQIATMALDLLHQSGKFKLKHLPNTQLRLRIGLHTG 1041

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345491231|ref|XP_001607934.2| PREDICTED: retinal guanylyl cyclase 2-like [Nasonia vitripennis]

 Score =  218 bits (555), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 103/113 (91%), Positives = 107/113 (94%)

Query: 1   MPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIG 60
           MPVDPE+F EVTIYFSDIVGFTTISAYSTPF+VVDLLNDLYTCFDATINAYNVYKVETIG
Sbjct: 400 MPVDPEEFAEVTIYFSDIVGFTTISAYSTPFQVVDLLNDLYTCFDATINAYNVYKVETIG 459

Query: 61  DAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
           DAYMVVGG PVRIPDHA QIATMALDLLH SG+FK+RHLP T LRLRIGLHTG
Sbjct: 460 DAYMVVGGCPVRIPDHASQIATMALDLLHQSGKFKLRHLPNTQLRLRIGLHTG 512

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417566|ref|XP_003491485.1| PREDICTED: hypothetical protein LOC100741981 [Bombus impatiens]

 Score =  218 bits (555), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 101/113 (89%), Positives = 107/113 (94%)

Query: 1    MPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIG 60
            MPVDPE+FREVTIYFSDIVGFTTISA+STPF+VVDLLNDLYTCFDATINAY VYKVETIG
Sbjct: 928  MPVDPEEFREVTIYFSDIVGFTTISAHSTPFQVVDLLNDLYTCFDATINAYTVYKVETIG 987

Query: 61   DAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
            DAYMVVGG PVRIPDHA QIATMALDLLH SG+FK++HLP T LRLRIGLHTG
Sbjct: 988  DAYMVVGGCPVRIPDHASQIATMALDLLHQSGKFKLKHLPNTQLRLRIGLHTG 1040

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383863186|ref|XP_003707063.1| PREDICTED: retinal guanylyl cyclase 2-like [Megachile rotundata]

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 101/113 (89%), Positives = 106/113 (93%)

Query: 1    MPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIG 60
            MPVDPE+FREVTIYFSDIVGFTTISA STPF+VVDLLNDLYTCFDATINAY VYKVETIG
Sbjct: 933  MPVDPEEFREVTIYFSDIVGFTTISARSTPFQVVDLLNDLYTCFDATINAYTVYKVETIG 992

Query: 61   DAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
            DAYMVVGG PVRIPDHA QIATMALDLLH SG+FK++HLP T LRLRIGLHTG
Sbjct: 993  DAYMVVGGCPVRIPDHASQIATMALDLLHQSGKFKLKHLPNTQLRLRIGLHTG 1045

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207168|gb|EFN84958.1| Retinal guanylyl cyclase 2 [Harpegnathos saltator]

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 100/113 (88%), Positives = 106/113 (93%)

Query: 1    MPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIG 60
            MPVDPE+FREVTIYFSDIVGFTTISA STPF+VVDLLNDLYTCFD TINAY VYKVETIG
Sbjct: 897  MPVDPEEFREVTIYFSDIVGFTTISARSTPFQVVDLLNDLYTCFDDTINAYTVYKVETIG 956

Query: 61   DAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
            DAYMVVGG PVRIPDHA Q+ATMALDLLH SG+FK++HLP TPLRLRIGLHTG
Sbjct: 957  DAYMVVGGCPVRIPDHASQVATMALDLLHQSGKFKLKHLPDTPLRLRIGLHTG 1009

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307182371|gb|EFN69634.1| Retinal guanylyl cyclase 2 [Camponotus floridanus]

 Score =  214 bits (545), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 100/113 (88%), Positives = 106/113 (93%)

Query: 1    MPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIG 60
            MPVDPE+FREVTIYFSDIVGFTTISA STPF+VVDLLNDLYTCFD TINAY VYKVETIG
Sbjct: 897  MPVDPEEFREVTIYFSDIVGFTTISARSTPFQVVDLLNDLYTCFDDTINAYTVYKVETIG 956

Query: 61   DAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
            DAYMVVGG PVRIPDHA Q+ATMALDLLH SG+FK++HLP TPLRLRIGLHTG
Sbjct: 957  DAYMVVGGCPVRIPDHASQVATMALDLLHQSGKFKLKHLPDTPLRLRIGLHTG 1009

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019199|gb|EGI59709.1| Retinal guanylyl cyclase 2 [Acromyrmex echinatior]

 Score =  214 bits (544), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 101/113 (89%), Positives = 106/113 (93%)

Query: 1    MPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIG 60
            MPVDPE+FREVTIYFSDIVGFTTISA STPF+VVDLLNDLYTCFD TINAY VYKVETIG
Sbjct: 898  MPVDPEEFREVTIYFSDIVGFTTISARSTPFQVVDLLNDLYTCFDDTINAYTVYKVETIG 957

Query: 61   DAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
            DAYMVVGG PVRIPDHA QIATMALDLLH SG+FK++HLP TPLRLRIGLHTG
Sbjct: 958  DAYMVVGGCPVRIPDHATQIATMALDLLHQSGKFKLKHLPDTPLRLRIGLHTG 1010

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322789340|gb|EFZ14652.1| hypothetical protein SINV_07693 [Solenopsis invicta]

 Score =  213 bits (541), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 101/113 (89%), Positives = 106/113 (93%)

Query: 1   MPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIG 60
           MPVDPE+FREVTIYFSDIVGFTTISA STPF+VVDLLNDLYTCFD TINAY VYKVETIG
Sbjct: 380 MPVDPEEFREVTIYFSDIVGFTTISARSTPFQVVDLLNDLYTCFDDTINAYTVYKVETIG 439

Query: 61  DAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
           DAYMVVGG PVRIPDHA QIATMALDLLH SG+FK++HLP TPLRLRIGLHTG
Sbjct: 440 DAYMVVGGCPVRIPDHATQIATMALDLLHQSGKFKLKHLPDTPLRLRIGLHTG 492

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	123
FB|FBgn0085386	1681	CG34357 [Drosophila melanogast	0.918	0.067	0.805	5.6e-45
UNIPROTKB|F1SSZ1	1105	F1SSZ1 "Guanylate cyclase" [Su	0.910	0.101	0.681	6e-35
UNIPROTKB|I3LJL1	1107	LOC100625536 "Guanylate cyclas	0.910	0.101	0.681	6e-35
UNIPROTKB|O19179	1109	GUCY2D "Retinal guanylyl cycla	0.910	0.100	0.681	6e-35
UNIPROTKB|F1PBE7	1050	GUCY2D "Guanylate cyclase" [Ca	0.910	0.106	0.681	6.9e-35
UNIPROTKB|F1MY40	1110	GUCY2D "Guanylate cyclase" [Bo	0.910	0.100	0.681	7.7e-35
UNIPROTKB|P55203	1110	GUCY2D "Retinal guanylyl cycla	0.910	0.100	0.681	7.7e-35
UNIPROTKB|F1NDQ8	1037	GUCY2F "Guanylate cyclase" [Ga	0.902	0.107	0.696	1.8e-34
UNIPROTKB|Q02846	1103	GUCY2D "Retinal guanylyl cycla	0.910	0.101	0.663	2.6e-34
MGI|MGI:105123	1108	Gucy2e "guanylate cyclase 2e"	0.902	0.100	0.678	3.4e-34

FB|FBgn0085386 CG34357 [Drosophila melanogaster (taxid:7227)]

 Score = 487 (176.5 bits), Expect = 5.6e-45, P = 5.6e-45
 Identities = 91/113 (80%), Positives = 103/113 (91%)

Query:     1 MPVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIG 60
             + VDPE+F +VTIYFSDIVGFTTI+A+ +P +VVDLLNDLYT FDATINAYNVYKVETIG
Sbjct:  1099 LAVDPEEFSDVTIYFSDIVGFTTIAAHCSPVQVVDLLNDLYTIFDATINAYNVYKVETIG 1158

Query:    61 DAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
             DAYMVV GLPV+IPDHA+QIATMALDLLH SGRF ++HLP  PL+LRIGLHTG
Sbjct:  1159 DAYMVVSGLPVKIPDHAEQIATMALDLLHQSGRFNVKHLPGVPLQLRIGLHTG 1211

GO:0005575 "cellular_component" evidence=ND

GO:0004672 "protein kinase activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0004383 "guanylate cyclase activity" evidence=ISS

GO:0006182 "cGMP biosynthetic process" evidence=ISS

UNIPROTKB|F1SSZ1 F1SSZ1 "Guanylate cyclase" [Sus scrofa (taxid:9823)]

 Score = 390 (142.3 bits), Expect = 6.0e-35, P = 6.0e-35
 Identities = 77/113 (68%), Positives = 90/113 (79%)

Query:     2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
             PV+PE F EVT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I +++VYKVETIGD
Sbjct:   870 PVEPEYFEEVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGSHDVYKVETIGD 929

Query:    62 AYMVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
             AYMV  GLP R    HA +IA MALD+L   G F++RH+P  P+R+RIGLH+G
Sbjct:   930 AYMVASGLPQRNGQRHAAEIANMALDILSAVGSFRMRHMPEVPVRIRIGLHSG 982

GO:0004383 "guanylate cyclase activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|I3LJL1 LOC100625536 "Guanylate cyclase" [Sus scrofa (taxid:9823)]

 Score = 390 (142.3 bits), Expect = 6.0e-35, P = 6.0e-35
 Identities = 77/113 (68%), Positives = 90/113 (79%)

Query:     2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
             PV+PE F EVT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I +++VYKVETIGD
Sbjct:   872 PVEPEYFEEVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGSHDVYKVETIGD 931

Query:    62 AYMVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
             AYMV  GLP R    HA +IA MALD+L   G F++RH+P  P+R+RIGLH+G
Sbjct:   932 AYMVASGLPQRNGQRHAAEIANMALDILSAVGSFRMRHMPEVPVRIRIGLHSG 984

GO:0004383 "guanylate cyclase activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|O19179 GUCY2D "Retinal guanylyl cyclase 1" [Canis lupus familiaris (taxid:9615)]

 Score = 390 (142.3 bits), Expect = 6.0e-35, P = 6.0e-35
 Identities = 77/113 (68%), Positives = 90/113 (79%)

Query:     2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
             PV+PE F EVT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I +++VYKVETIGD
Sbjct:   874 PVEPEYFEEVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGSHDVYKVETIGD 933

Query:    62 AYMVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
             AYMV  GLP R    HA +IA MALD+L   G F++RH+P  P+R+RIGLH+G
Sbjct:   934 AYMVASGLPQRNGQRHAAEIANMALDILSAVGSFRMRHMPEVPVRIRIGLHSG 986

GO:0004383 "guanylate cyclase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|F1PBE7 GUCY2D "Guanylate cyclase" [Canis lupus familiaris (taxid:9615)]

 Score = 389 (142.0 bits), Expect = 6.9e-35, P = 6.9e-35
 Identities = 77/113 (68%), Positives = 90/113 (79%)

Query:     2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
             PV+PE F EVT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I +++VYKVETIGD
Sbjct:   874 PVEPEYFEEVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGSHDVYKVETIGD 933

Query:    62 AYMVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
             AYMV  GLP R    HA +IA MALD+L   G F++RH+P  P+R+RIGLH+G
Sbjct:   934 AYMVASGLPQRNGQRHAVEIANMALDILSAVGSFRMRHMPEVPVRIRIGLHSG 986

GO:0004383 "guanylate cyclase activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|F1MY40 GUCY2D "Guanylate cyclase" [Bos taurus (taxid:9913)]

 Score = 389 (142.0 bits), Expect = 7.7e-35, P = 7.7e-35
 Identities = 77/113 (68%), Positives = 90/113 (79%)

Query:     2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
             PV+PE F EVT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I +++VYKVETIGD
Sbjct:   875 PVEPEYFEEVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGSHDVYKVETIGD 934

Query:    62 AYMVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
             AYMV  GLP R    HA +IA MALD+L   G F++RH+P  P+R+RIGLH+G
Sbjct:   935 AYMVASGLPQRNGHRHAAEIANMALDILSAVGTFRMRHMPEVPVRIRIGLHSG 987

GO:0004383 "guanylate cyclase activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|P55203 GUCY2D "Retinal guanylyl cyclase 1" [Bos taurus (taxid:9913)]

 Score = 389 (142.0 bits), Expect = 7.7e-35, P = 7.7e-35
 Identities = 77/113 (68%), Positives = 90/113 (79%)

Query:     2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
             PV+PE F EVT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I +++VYKVETIGD
Sbjct:   875 PVEPEYFEEVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGSHDVYKVETIGD 934

Query:    62 AYMVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
             AYMV  GLP R    HA +IA MALD+L   G F++RH+P  P+R+RIGLH+G
Sbjct:   935 AYMVASGLPQRNGHRHAAEIANMALDILSAVGTFRMRHMPEVPVRIRIGLHSG 987

GO:0004383 "guanylate cyclase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

UNIPROTKB|F1NDQ8 GUCY2F "Guanylate cyclase" [Gallus gallus (taxid:9031)]

 Score = 385 (140.6 bits), Expect = 1.8e-34, P = 1.8e-34
 Identities = 78/112 (69%), Positives = 89/112 (79%)

Query:     3 VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA 62
             V+PE F +VTIYFSDIVGFTTISA S P EVVDLLNDLYT FDA I  ++VYKVETIGDA
Sbjct:   861 VEPEYFDQVTIYFSDIVGFTTISALSEPIEVVDLLNDLYTLFDAVIGNHDVYKVETIGDA 920

Query:    63 YMVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
             YMV  GLP R  + HA +IA M+LD+L   G FK+RH+P  PLR+RIGLHTG
Sbjct:   921 YMVASGLPKRNGNKHAAEIANMSLDILSSVGTFKMRHMPDIPLRIRIGLHTG 972

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0004383 "guanylate cyclase activity" evidence=IEA

UNIPROTKB|Q02846 GUCY2D "Retinal guanylyl cyclase 1" [Homo sapiens (taxid:9606)]

 Score = 384 (140.2 bits), Expect = 2.6e-34, P = 2.6e-34
 Identities = 75/113 (66%), Positives = 90/113 (79%)

Query:     2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
             PV+PE F +VT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I +++VYKVETIGD
Sbjct:   870 PVEPEYFEQVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGSHDVYKVETIGD 929

Query:    62 AYMVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
             AYMV  GLP R    HA +IA M+LD+L   G F++RH+P  P+R+RIGLH+G
Sbjct:   930 AYMVASGLPQRNGQRHAAEIANMSLDILSAVGTFRMRHMPEVPVRIRIGLHSG 982

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0004383 "guanylate cyclase activity" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0005640 "nuclear outer membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007168 "receptor guanylyl cyclase signaling pathway" evidence=TAS

GO:0004872 "receptor activity" evidence=TAS

MGI|MGI:105123 Gucy2e "guanylate cyclase 2e" [Mus musculus (taxid:10090)]

 Score = 383 (139.9 bits), Expect = 3.4e-34, P = 3.4e-34
 Identities = 76/112 (67%), Positives = 89/112 (79%)

Query:     3 VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA 62
             V+PE F EVT+YFSDIVGFTTISA S P EVVDLLNDLYT FDA I A++VYKVETIGDA
Sbjct:   874 VEPEYFEEVTLYFSDIVGFTTISAMSEPIEVVDLLNDLYTLFDAIIGAHDVYKVETIGDA 933

Query:    63 YMVVGGLPVRIPD-HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
             YMV  GLP R    HA +IA M+LD+L   G F++RH+P  P+R+RIGLH+G
Sbjct:   934 YMVASGLPQRNGQRHAAEIANMSLDILSAVGSFRMRHMPEVPVRIRIGLHSG 985

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004383 "guanylate cyclase activity" evidence=ISO

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISO

GO:0006182 "cGMP biosynthetic process" evidence=ISO

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0007601 "visual perception" evidence=IEA

GO:0009190 "cyclic nucleotide biosynthetic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

GO:0016849 "phosphorus-oxygen lyase activity" evidence=IEA

GO:0035556 "intracellular signal transduction" evidence=IEA

GO:0042802 "identical protein binding" evidence=ISO

GO:0050896 "response to stimulus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P55203	GUC2D_BOVIN	4, ., 6, ., 1, ., 2	0.6814	0.9105	0.1009	yes	N/A
P51842	GUC2F_RAT	4, ., 6, ., 1, ., 2	0.6637	0.9349	0.1037	yes	N/A
Q02846	GUC2D_HUMAN	4, ., 6, ., 1, ., 2	0.6637	0.9105	0.1015	yes	N/A
O19179	GUC2D_CANFA	4, ., 6, ., 1, ., 2	0.6814	0.9105	0.1009	yes	N/A
P52785	GUC2E_MOUSE	4, ., 6, ., 1, ., 2	0.6785	0.9024	0.1001	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	4.6.1.2	LOW CONFIDENCE prediction!
3rd Layer	4.6.1	0.691

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	123
smart00044	194	smart00044, CYCc, Adenylyl- / guanylyl cyclase, ca	2e-49
pfam00211	184	pfam00211, Guanylate_cyc, Adenylate and Guanylate	3e-46
cd07302	177	cd07302, CHD, cyclase homology domain	4e-40
cd07556	133	cd07556, Nucleotidyl_cyc_III, Class III nucleotidy	3e-23
COG2114	227	COG2114, CyaA, Adenylate cyclase, family 3 (some p	2e-21

>gnl|CDD|214485 smart00044, CYCc, Adenylyl- / guanylyl cyclase, catalytic domain

 Score =  155 bits (394), Expect = 2e-49
 Identities = 60/116 (51%), Positives = 78/116 (67%), Gaps = 2/116 (1%)

Query: 2   PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
           PV  E +  VTI FSDIVGFT++ + STP +VV+LLNDLY+ FD  I+ +  YKV+TIGD
Sbjct: 28  PVPAESYDNVTILFSDIVGFTSLCSTSTPEQVVNLLNDLYSRFDQIIDRHGGYKVKTIGD 87

Query: 62  AYMVVGGLPVR-IPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPV 116
           AYMV  GLP   + DHA+ IA  ALD++       ++H     LR+RIG+HTG  V
Sbjct: 88  AYMVASGLPEEALVDHAELIADEALDMVEELKTVLVQH-REEGLRVRIGIHTGPVV 142

Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes. Length = 194

>gnl|CDD|201086 pfam00211, Guanylate_cyc, Adenylate and Guanylate cyclase catalytic domain

 Score =  147 bits (373), Expect = 3e-46
 Identities = 56/115 (48%), Positives = 73/115 (63%), Gaps = 2/115 (1%)

Query: 3   VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA 62
           V  + +  VTI F+DIVGFT +S+  +P E+V LLNDLYT FD  ++ + VYKV+TIGDA
Sbjct: 1   VYAQSYDNVTILFADIVGFTALSSRHSPEELVRLLNDLYTRFDELLDKHGVYKVKTIGDA 60

Query: 63  YMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVS 117
           YM   GLP   P HA  +A MALD+L       I       LR+R+G+HTG  V+
Sbjct: 61  YMAASGLPEPSPAHAQTLAEMALDMLEAIKSVNIHSFE--GLRVRVGIHTGPVVA 113

Length = 184

>gnl|CDD|143636 cd07302, CHD, cyclase homology domain

 Score =  131 bits (331), Expect = 4e-40
 Identities = 46/107 (42%), Positives = 61/107 (57%)

Query: 10  EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGL 69
           EVT+ F+DIVGFT +S    P E+V+LLN+ ++ FD  I  +     +TIGDA M V GL
Sbjct: 1   EVTVLFADIVGFTALSERLGPEELVELLNEYFSAFDEIIERHGGTVDKTIGDAVMAVFGL 60

Query: 70  PVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPV 116
           P    DHA++    AL++               PLRLRIG+HTG  V
Sbjct: 61  PGAHEDHAERAVRAALEMQEALAELNAEREGGPPLRLRIGIHTGPVV 107

Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide. Length = 177

>gnl|CDD|143637 cd07556, Nucleotidyl_cyc_III, Class III nucleotidyl cyclases

 Score = 87.0 bits (216), Expect = 3e-23
 Identities = 41/108 (37%), Positives = 56/108 (51%), Gaps = 7/108 (6%)

Query: 10  EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGL 69
            VTI F+DIVGFT+++    P E  +LLN+L   FD+ I      K++TIGD +MVV G 
Sbjct: 1   PVTILFADIVGFTSLADALGPDEGDELLNELAGRFDSLIRRSGDLKIKTIGDEFMVVSG- 59

Query: 70  PVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVS 117
                DH       A D+        +      P+R+RIG+HTG  V 
Sbjct: 60  ----LDHPAAAVAFAEDMREAVSA--LNQSEGNPVRVRIGIHTGPVVV 101

Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways. Length = 133

>gnl|CDD|225025 COG2114, CyaA, Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]

 Score = 84.5 bits (209), Expect = 2e-21
 Identities = 35/114 (30%), Positives = 51/114 (44%), Gaps = 5/114 (4%)

Query: 4   DPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAY 63
                R VT+ F+DIVG T +S       +V+LLN  +      +  +    V+ IGD +
Sbjct: 40  GGAGDRRVTLLFADIVGSTELSESLGDEALVELLNLYFDAVAEVVARHGGRVVKFIGDGF 99

Query: 64  MVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVS 117
           + V G P  + D       + L L +   R     L    LR+RIG+HTG  V 
Sbjct: 100 LAVFGRPSPLEDAVACALDLQLALRNPLAR-----LRRESLRVRIGIHTGEVVV 148

Length = 227

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	123
PF00211	184	Guanylate_cyc: Adenylate and Guanylate cyclase cat	99.96
smart00044	194	CYCc Adenylyl- / guanylyl cyclase, catalytic domai	99.96
KOG4171|consensus	671		99.95
cd07302	177	CHD cyclase homology domain. Catalytic domains of	99.93
COG2114	227	CyaA Adenylate cyclase, family 3 (some proteins co	99.93
KOG3619|consensus	867		99.91
KOG3618|consensus	1318		99.89
KOG1023|consensus	484		99.86
KOG3619|consensus	867		99.44
cd07556	133	Nucleotidyl_cyc_III Class III nucleotidyl cyclases	99.39
KOG3618|consensus	1318		99.24
PF05165	246	GGDN: GGDN family; InterPro: IPR007839 GTP cyclohy	97.93
COG2429	250	Archaeal GTP cyclohydrolase III [Nucleotide transp	97.55
PRK10245	366	adrA diguanylate cyclase AdrA; Provisional	97.52
PF00990	161	GGDEF: GGDEF domain; InterPro: IPR000160 This doma	97.42
smart00267	163	GGDEF diguanylate cyclase. Diguanylate cyclase, pr	97.35
PRK02240	254	GTP cyclohydrolase III; Provisional	97.3
COG2199	181	c-di-GMP synthetase (diguanylate cyclase, GGDEF do	97.12
cd01949	158	GGDEF Diguanylate-cyclase (DGC) or GGDEF domain. D	97.04
PRK09894	296	diguanylate cyclase; Provisional	96.81
PRK02240	254	GTP cyclohydrolase III; Provisional	96.78
TIGR00254	165	GGDEF diguanylate cyclase (GGDEF) domain. The GGDE	96.75
PRK11059	640	regulatory protein CsrD; Provisional	96.71
PRK14538	838	putative bifunctional signaling protein/50S riboso	96.31
PRK09966	407	putative inner membrane diguanylate cyclase; Provi	96.31
PRK15426	570	putative diguanylate cyclase YedQ; Provisional	96.01
PRK13561	651	putative diguanylate cyclase; Provisional	95.93
PRK11829	660	biofilm formation regulator HmsP; Provisional	95.79
TIGR02577	482	cas_TM1794_Crm2 CRISPR-associated protein, Crm2 fa	95.5
COG3706	435	PleD Response regulator containing a CheY-like rec	95.45
PRK10060	663	RNase II stability modulator; Provisional	95.31
PF10851	116	DUF2652: Protein of unknown function (DUF2652) ; I	94.97
PRK11359	799	cyclic-di-GMP phosphodiesterase; Provisional	94.86
PRK09776	1092	putative diguanylate cyclase; Provisional	94.82
COG3887	655	Predicted signaling protein consisting of a modifi	94.7
TIGR02578	648	cas_TM1811_Csm1 CRISPR-associated protein, Csm1 fa	92.78
PF05165	246	GGDN: GGDN family; InterPro: IPR007839 GTP cyclohy	91.94
COG2429	250	Archaeal GTP cyclohydrolase III [Nucleotide transp	89.65
PF11294	373	DUF3095: Protein of unknown function (DUF3095); In	88.42
PRK09581	457	pleD response regulator PleD; Reviewed	86.84
PF11608	90	Limkain-b1: Limkain b1; InterPro: IPR024582 This e	84.66

>PF00211 Guanylate_cyc: Adenylate and Guanylate cyclase catalytic domain; InterPro: IPR001054 Guanylate cyclases (4

Probab=99.96  E-value=8.1e-29  Score=165.02  Aligned_cols=117  Identities=37%  Similarity=0.552  Sum_probs=108.8

Q ss_pred             CCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHH
Q psy13822          4 DPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATM   83 (123)
Q Consensus         4 ~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~   83 (123)
                      +.++++++|+||+||+|||.+++.++|+++..++++++..+.+++++|+|.++++.||++|++||.+....+++.+|+++
T Consensus         2 ~~~~~~~vtvlf~di~~ft~l~~~~~~~~~~~~l~~~~~~~~~~v~~~~g~~~~~~Gd~~~~~f~~~~~~~~~~~~a~~~   81 (184)
T PF00211_consen    2 YSEQYRNVTVLFADIVGFTDLTEQLDPEELVRLLNDFFSSLDRIVKQHGGEIIKFIGDGVMAVFGLPEPDEDAAERAVQF   81 (184)
T ss_dssp             EEEEEEEEEEEEEEETTHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTEEEEEEETTEEEEEESSSSCHCHHHHHHHHH
T ss_pred             CccccCeEEEEEEEecCcHHHHHhCCchhHHHHHHHHHHHhhhccccccccccccccceeEEEecccccccccccccccc
Confidence            34678999999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             HHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecC
Q psy13822         84 ALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRK  122 (123)
Q Consensus        84 al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~  122 (123)
                      |+++++.+++++...  ..++++|||||+|++++|.+|.
T Consensus        82 al~~~~~~~~~~~~~--~~~~~~rIGI~~G~v~~g~~G~  118 (184)
T PF00211_consen   82 ALALLEALERLNKES--GPPLSVRIGIHTGPVVVGVVGS  118 (184)
T ss_dssp             HHHHHHHHHHHHHHH--HSS-EEEEEEEEEEEEEEEEES
T ss_pred             ccchhhccccccccc--ceeeeeeccccccccccccccC
Confidence            999999998887654  5689999999999999999984

6.1.2 from EC) catalyse the formation of cyclic GMP (cGMP) from GTP. cGMP acts as an intracellular messenger, activating cGMP-dependent kinases and regulating cGMP-sensitive ion channels. The role of cGMP as a second messenger in vascular smooth muscle relaxation and retinal photo-transduction is well established. Guanylate cyclase is found both in the soluble and particulate fractions of eukaryotic cells. The soluble and plasma membrane-bound forms differ in structure, regulation and other properties [, , , ]. Most currently known plasma membrane-bound forms are receptors for small polypeptides. The soluble forms of guanylate cyclase are cytoplasmic heterodimers having alpha and beta subunits. In all characterised eukaryote guanylyl- and adenylyl cyclases, cyclic nucleotide synthesis is carried out by the conserved class III cyclase domain. ; GO: 0016849 phosphorus-oxygen lyase activity, 0009190 cyclic nucleotide biosynthetic process, 0035556 intracellular signal transduction; PDB: 3UVJ_A 1FX4_A 1WC4_B 2BW7_D 1WC1_A 1WC0_A 1WC3_A 1WC5_A 1WC6_A 3ET6_B ....

>smart00044 CYCc Adenylyl- / guanylyl cyclase, catalytic domain

Probab=99.96  E-value=2.9e-27  Score=158.94  Aligned_cols=120  Identities=50%  Similarity=0.732  Sum_probs=111.1

Q ss_pred             CCCCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCC-chHHHHH
Q psy13822          2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRI-PDHADQI   80 (123)
Q Consensus         2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~-~~~~~~a   80 (123)
                      |..+.+++++|+||+||+|||.+++..+++++..+++.++..+.+++++|||++.++.||++|++|+.|... .+++.+|
T Consensus        28 ~~~~~~~~~~tvlf~di~g~t~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~v~~~~Gd~~l~~F~~~~~~~~~~a~~a  107 (194)
T smart00044       28 PVPAESYDNVTILFTDIVGFTTLSSEATPEQVVTLLNDLYSRFDRIIDRHGGYKVKTIGDAYMVVSGLPTEALVDHAELA  107 (194)
T ss_pred             CccccccCeEEEEEeEhhhhhhhhhhCCHHHHHHHHHHHHHHHHHHHHhcCeEEEEEeCCEEEEEECCCCCcchHHHHHH
Confidence            345678899999999999999999999999999999999999999999999999999999999999999887 5999999


Q ss_pred             HHHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecC
Q psy13822         81 ATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRK  122 (123)
Q Consensus        81 ~~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~  122 (123)
                      +.+|+++++.+..++... ...++++|||||+|++++|.+|.
T Consensus       108 ~~~al~l~~~~~~~~~~~-~~~~l~~riGih~G~v~~~~~g~  148 (194)
T smart00044      108 ADEALDMVESLKTVLSQH-RGNGLRVRIGIHTGPVVAGVVGI  148 (194)
T ss_pred             HHHHHHHHHHHHHHHhhc-cCCCeeEEEEEeccceEEEecCC
Confidence            999999999998886644 36789999999999999999986

Present in two copies in mammalian adenylyl cyclases. Eubacterial homologues are known. Two residues (Asn, Arg) are thought to be involved in catalysis. These cyclases have important roles in a diverse range of cellular processes.

>KOG4171|consensus

Probab=99.95  E-value=2.2e-27  Score=179.40  Aligned_cols=121  Identities=48%  Similarity=0.775  Sum_probs=114.7

Q ss_pred             CCCCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHH
Q psy13822          2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIA   81 (123)
Q Consensus         2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~   81 (123)
                      ++.+.++.++|+||+||++||.+...+.|.+++.+||++|+.+++++.-++.|++.++||.||++.|+|...+.||+++|
T Consensus       434 ~v~a~~f~~vTilFsdIv~Ft~ic~~ctp~~vV~~LN~lyt~fD~~i~~~~VYKVETIGDaYm~vsG~P~~~~~HAe~i~  513 (671)
T KOG4171|consen  434 SVDAKEFDDVTILFSDIVGFTAICSQCTPMQVVNMLNELYTRFDRIIDTHDVYKVETIGDAYMVVSGLPDASDYHAEHIA  513 (671)
T ss_pred             CcCccccCceEEEEeccchHHhHhhccCcHHHHHHHHHHHHHHHHhhcccCeEEEeeccchheeecCCCCCChhHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822         82 TMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK  123 (123)
Q Consensus        82 ~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~  123 (123)
                      .+||.|....+..-... ...++.+|||||+|||++|++|-|
T Consensus       514 ~~AL~Mm~~ak~v~~p~-~~~pi~iRiGIHsG~VvAGVVG~k  554 (671)
T KOG4171|consen  514 DLALGMMEEAKEVVSPV-TGEPIQIRIGIHSGPVVAGVVGVK  554 (671)
T ss_pred             HHHHHHHHHhhhhcCcC-CCCceEEEEEeccCCeeeeeeccc
Confidence            99999999998876554 567999999999999999999975

>cd07302 CHD cyclase homology domain

Probab=99.93  E-value=6.6e-25  Score=144.19  Aligned_cols=113  Identities=41%  Similarity=0.581  Sum_probs=106.8

Q ss_pred             eEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHHHH
Q psy13822         10 EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLH   89 (123)
Q Consensus        10 ~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~~~   89 (123)
                      ++|++|+||++||.+.+..+++++..+++.++..+.+++..|+|++.++.||+++++|+.+...++++.+|+++|+++++
T Consensus         1 ~~~il~~di~~~t~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~gd~~~~~f~~~~~~~~~~~~A~~~a~~i~~   80 (177)
T cd07302           1 EVTVLFADIVGFTALSERLGPEELVELLNEYFSAFDEIIERHGGTVDKTIGDAVMAVFGLPGAHEDHAERAVRAALEMQE   80 (177)
T ss_pred             CEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCceEEEEeCCCCCchhHHHHHHHHHHHHHH
Confidence            48999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhhhhhhcCCCCCceeEEEeeecCceeEEeecC
Q psy13822         90 HSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRK  122 (123)
Q Consensus        90 ~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~  122 (123)
                      .+..++........+++|||||+|++++|.+|.
T Consensus        81 ~~~~~~~~~~~~~~~~~riGi~~G~~~~g~~g~  113 (177)
T cd07302          81 ALAELNAEREGGPPLRLRIGIHTGPVVAGVVGS  113 (177)
T ss_pred             HHHHHhhcccCCCCeEEEEEEecceEEEEecCC
Confidence            999987664456789999999999999999986

Catalytic domains of the mononucleotidyl cyclases (MNC's), also called cyclase homology domains (CHDs), are part of the class III nucleotidyl cyclases. This class includes eukaryotic and prokaryotic adenylate cyclases (AC's) and guanylate cyclases (GC's). They seem to share a common catalytic mechanism in their requirement for two magnesium ions to bind the polyphosphate moiety of the nucleotide.

>COG2114 CyaA Adenylate cyclase, family 3 (some proteins contain HAMP domain) [Signal transduction mechanisms]

Probab=99.93  E-value=5.7e-25  Score=151.42  Aligned_cols=108  Identities=32%  Similarity=0.441  Sum_probs=90.0

Q ss_pred             eeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHH-HHHHH
Q psy13822          9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIAT-MALDL   87 (123)
Q Consensus         9 ~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~-~al~~   87 (123)
                      +++|+||+||+|||.+++.++++++..+++.|+..+..++.+|||.++|++||++|++||.|...+ ++.+++. +.+++
T Consensus        45 ~~vtilfaDi~g~T~l~~~~~~~~~~~ll~~~~~~~~~~v~~~gG~v~k~iGD~~la~F~~p~~~~-~A~~~a~~~~~~~  123 (227)
T COG2114          45 RRVTLLFADIVGSTELSESLGDEALVELLNLYFDAVAEVVARHGGRVVKFIGDGFLAVFGRPSPLE-DAVACALDLQLAL  123 (227)
T ss_pred             ceEEEEEEeeccchHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEecceEEEEeCCCCCcH-HHHHHHHHHHHHH
Confidence            599999999999999999999999999999999999999999999999999999999999997766 2222222 34455


Q ss_pred             HHHhhhhhhcCCCCCceeEEEeeecCceeEEeecC
Q psy13822         88 LHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRK  122 (123)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~  122 (123)
                      +....+.+..     .+++|||||+|+++.|.+|+
T Consensus       124 ~~~~~~~~~~-----~l~~riGi~~G~vv~~~~g~  153 (227)
T COG2114         124 RNPLARLRRE-----SLRVRIGIHTGEVVVGNTGG  153 (227)
T ss_pred             HHHHhhccCc-----CeeEEEEEEeecEEEEeecC
Confidence            5444443221     29999999999999999874

>KOG3619|consensus

Probab=99.91  E-value=1.2e-24  Score=169.38  Aligned_cols=118  Identities=30%  Similarity=0.540  Sum_probs=111.8

Q ss_pred             CCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHH
Q psy13822          4 DPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATM   83 (123)
Q Consensus         4 ~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~   83 (123)
                      +-+.+.+++++|+||+|||.++.++++++++++||++|.+++++..++++..+|+.||+++++.|.|+.+++||..++++
T Consensus       106 y~~~h~nVSIl~adivgft~l~s~~saqelv~~LneLf~rfd~lA~~~~clRiKiLGdcyyCvsglp~~~~dHA~~~v~m  185 (867)
T KOG3619|consen  106 YIQRHDNVSILFADIVGFTQLASQCSAQELVKVLNELFARFDRLAAENHCLRIKILGDCYYCVSGLPEARPDHAVCCVEM  185 (867)
T ss_pred             heeeccchHhhHHHHhhhhhhhcCCCHHHHHHHHHHHHHHHHHHHHhcceEeeeeecceeEEecCCCCCChhHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822         84 ALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK  123 (123)
Q Consensus        84 al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~  123 (123)
                      .++|+++++..+..  .+.++++|||||+|+|.+|++|-+
T Consensus       186 gl~Mi~aI~~vr~a--t~~dvnmrvGihsG~Vl~GvlG~~  223 (867)
T KOG3619|consen  186 GLDMIKAIKQVREA--TGVDVNMRVGIHSGSVLCGVLGLR  223 (867)
T ss_pred             HHHHHHHHHHHHHH--hCCCCceEEEEecCceeecccccc
Confidence            99999999998665  577999999999999999999954

>KOG3618|consensus

Probab=99.89  E-value=6.5e-24  Score=162.18  Aligned_cols=120  Identities=32%  Similarity=0.544  Sum_probs=111.9

Q ss_pred             CCCCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHH
Q psy13822          2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIA   81 (123)
Q Consensus         2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~   81 (123)
                      |+.-....+++|||+||+|||++++.-+.++++.+||++|.+++++.+..|+.++.+.||+++|+-|.|++..+||.+++
T Consensus       332 PF~M~~menVSILFADIvGFTkMSsnKsA~~LV~lLNDLFgRFD~LC~l~gcEKISTLGDCYYCVaGCPEPraDHA~ccv  411 (1318)
T KOG3618|consen  332 PFKMQQMENVSILFADIVGFTKMSSNKSAHALVGLLNDLFGRFDRLCELTGCEKISTLGDCYYCVAGCPEPRADHAYCCV  411 (1318)
T ss_pred             chhhhhhhhhhhhhhhhhchhhccccccHHHHHHHHHHHHHHHHHHHHhcCcchhccccceeeeecCCCCCcccceeeeh
Confidence            55556778999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822         82 TMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK  123 (123)
Q Consensus        82 ~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~  123 (123)
                      ++.+.|+.+++++....  .+-+++|+|+|+|.|+||.+|.|
T Consensus       412 EMGLgMI~AirqFd~~r--~e~VnMRVGvHTGtVlCGivGtr  451 (1318)
T KOG3618|consen  412 EMGLGMIKAIRQFDQER--KEMVNMRVGVHTGTVLCGIVGTR  451 (1318)
T ss_pred             hhcchHHHHHHHHHHHh--hcccceEEEEecceEEeeeeecc
Confidence            99999999999986543  45789999999999999999975

>KOG1023|consensus

Probab=99.86  E-value=2.9e-22  Score=149.27  Aligned_cols=122  Identities=59%  Similarity=0.908  Sum_probs=116.7

Q ss_pred             CCCCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCc-hHHHHH
Q psy13822          2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIP-DHADQI   80 (123)
Q Consensus         2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~-~~~~~a   80 (123)
                      ++.|+.+..+|++|.|+++||.++....|.+++.++|++++.++.++++|+++++.++||++|++.|.|..++ .|+...
T Consensus       288 ~v~pe~~~~vti~fsDiv~fT~l~~~~~P~~vv~~lNdlyt~Fd~ii~~~d~yKVetiGDaYmvvSglp~~n~~~H~~ei  367 (484)
T KOG1023|consen  288 TVDPESFDSVTIYFSDIVGFTVLSSNSTPIQVVTLLNDLYTTFDRIIDKHDVYKVETIGDAYMVVSGLPIRNGYRHAREI  367 (484)
T ss_pred             cCCccccCceeeeeHHHHHHHHHHhcCCCceeeeeccchHHhhhhcccccCCeeEeccCcceeecccCceecHhHHHHHH
Confidence            5678999999999999999999999999999999999999999999999999999999999999999998876 489999


Q ss_pred             HHHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822         81 ATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK  123 (123)
Q Consensus        81 ~~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~  123 (123)
                      +..+++++..+..+..++.+..++++|||+|+||+.+|++|.+
T Consensus       368 a~msl~~~~~~~~f~i~H~P~~~l~iRig~~sg~~~agVvgl~  410 (484)
T KOG1023|consen  368 ASMALGLRSFLESFSLPHRPWEKLRLRIGFHSGPVVAGVVGLK  410 (484)
T ss_pred             HHHHHHHHHHHhccCCCCCCchhhheeeccccCCceecccccC
Confidence            9999999999999999988899999999999999999999964

>KOG3619|consensus

Probab=99.44  E-value=3.1e-13  Score=106.34  Aligned_cols=119  Identities=25%  Similarity=0.475  Sum_probs=100.6

Q ss_pred             CCCCceeeEEEEEeeccChhhhccCCC----HHHHHHHHHHHHHHHHHHHh--hc-CeEEEeeeCcEEEEEeCCCCCC--
Q psy13822          3 VDPEDFREVTIYFSDIVGFTTISAYST----PFEVVDLLNDLYTCFDATIN--AY-NVYKVETIGDAYMVVGGLPVRI--   73 (123)
Q Consensus         3 ~~~~~~~~~tvlf~di~~~t~l~~~~~----~~~~~~~l~~~~~~~~~~v~--~~-gg~~~~~~Gd~~~~~fg~~~~~--   73 (123)
                      ++++.+..|.|||+.+.||.....+.+    -.+.+++||++...+++++.  ++ +..++|++|..|||+.|.....  
T Consensus       643 LY~qSy~~VgVMFASipnF~dFYsE~d~NneGlECLRlLNEIIaDFDeLL~~pkF~~IEKIKTIGSTYMAAsGL~~~~~~  722 (867)
T KOG3619|consen  643 LYHQSYDCVGVMFASIPNFKDFYSECDVNNEGLECLRLLNEIIADFDELLSKPKFSGVEKIKTIGSTYMAASGLNPTSAQ  722 (867)
T ss_pred             HHHhhhceEEEEEEecCCcceeeeeecCCcccchHHHHHHHHHhhHHHhcCccccccceeEEEecchhhhhhCCChhhhh
Confidence            346778999999999999988766553    36899999999999999997  55 6799999999999999984321  


Q ss_pred             -c-------hHHHHHHHHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822         74 -P-------DHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK  123 (123)
Q Consensus        74 -~-------~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~  123 (123)
                       .       .|....+++|++|...++..|..  ..+...+||||+.||+++|++|.|
T Consensus       723 ~~~~~~~~~~h~~~l~eFAlal~~~L~~IN~~--SfNnF~LrIGin~GpvvAGVIGAr  778 (867)
T KOG3619|consen  723 ENDQSLRQWSHLGALVEFALALMHKLDEINRH--SFNNFELRIGINHGPVVAGVIGAR  778 (867)
T ss_pred             ccCcchhHHhhHHHHHHHHHHHHHHHHhhhHH--hhccceeeeceeccceeeeEecCC
Confidence             1       46678899999999999999854  366889999999999999999975

>cd07556 Nucleotidyl_cyc_III Class III nucleotidyl cyclases

Probab=99.39  E-value=4.6e-11  Score=74.72  Aligned_cols=104  Identities=40%  Similarity=0.593  Sum_probs=88.9

Q ss_pred             EEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHHHHH
Q psy13822         11 VTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHH   90 (123)
Q Consensus        11 ~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~~~~   90 (123)
                      ++++++||.+|+.+.+..+.....++++.+...+.+++..+++.+.++.||.++++|..     ....++..++..+.+.
T Consensus         2 ~~ll~i~i~~~~~i~~~~g~~~~~~~l~~~~~~l~~~~~~~~~~~~r~~~d~f~~l~~~-----~~~~~~~~~~~~i~~~   76 (133)
T cd07556           2 VTILFADIVGFTSLADALGPDEGDELLNELAGRFDSLIRRSGDLKIKTIGDEFMVVSGL-----DHPAAAVAFAEDMREA   76 (133)
T ss_pred             EEEEEEEchhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEeecceEEEEECc-----hHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999998999999999999999943     4556788888888887


Q ss_pred             hhhhhhcCCCCCceeEEEeeecCceeEEeec
Q psy13822         91 SGRFKIRHLPYTPLRLRIGLHTGRPVSKHLR  121 (123)
Q Consensus        91 ~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG  121 (123)
                      +......  ....+.++||+++|++..+..|
T Consensus        77 ~~~~~~~--~~~~~~~~ig~~~g~~~~~~~~  105 (133)
T cd07556          77 VSALNQS--EGNPVRVRIGIHTGPVVVGVIG  105 (133)
T ss_pred             HHHHHhc--cCCceEEEEEEecccEEEEecc
Confidence            7654322  3446889999999999888544

Class III nucleotidyl cyclases are the largest, most diverse group of nucleotidyl cyclases (NC's) containing prokaryotic and eukaryotic proteins. They can be divided into two major groups; the mononucleotidyl cyclases (MNC's) and the diguanylate cyclases (DGC's). The MNC's, which include the adenylate cyclases (AC's) and the guanylate cyclases (GC's), have a conserved cyclase homology domain (CHD), while the DGC's have a conserved GGDEF domain, named after a conserved motif within this subgroup. Their products, cyclic guanylyl and adenylyl nucleotides, are second messengers that play important roles in eukaryotic signal transduction and prokaryotic sensory pathways.

>KOG3618|consensus

Probab=99.24  E-value=6.4e-12  Score=97.41  Aligned_cols=118  Identities=22%  Similarity=0.355  Sum_probs=101.3

Q ss_pred             CCceeeEEEEEeeccChhhhccCC--CHHHHHHHHHHHHHHHHHHHhhc---CeEEEeeeCcEEEEEeCCCCC-------
Q psy13822          5 PEDFREVTIYFSDIVGFTTISAYS--TPFEVVDLLNDLYTCFDATINAY---NVYKVETIGDAYMVVGGLPVR-------   72 (123)
Q Consensus         5 ~~~~~~~tvlf~di~~~t~l~~~~--~~~~~~~~l~~~~~~~~~~v~~~---gg~~~~~~Gd~~~~~fg~~~~-------   72 (123)
                      ++...++.|+|+.|+||.++.++.  +-.|+.+.||++...+++++.+=   ...++|++|-.+||..|+...       
T Consensus      1078 SeNH~~~gviFASIvNfnemYeEnyeGGkEflRVLNElIGDFDELLsrPdf~~iEKIKTIG~tyMAASGLnp~~~~~~~h 1157 (1318)
T KOG3618|consen 1078 SENHDSGGVIFASIVNFNEMYEENYEGGKEFLRVLNELIGDFDELLSRPDFSSIEKIKTIGATYMAASGLNPAQAQDGSH 1157 (1318)
T ss_pred             cccCccceEEEEEeccHHHHHHHhhhchHHHHHHHHHHhccHHHHhccccchhhHHHhhhhHHHHHhcCCChHHccCCCC
Confidence            556778999999999999998765  67999999999999999999764   478899999999999998432       


Q ss_pred             CchHHHHHHHHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822         73 IPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK  123 (123)
Q Consensus        73 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~  123 (123)
                      ..+|-....++|++|++.+..+|..- -..++.+|||++.|||.+|+||+.
T Consensus      1158 p~EHl~~l~eFa~amq~Vvd~FN~dl-L~Fnf~lrvG~NiGpvTAGVIGTt 1207 (1318)
T KOG3618|consen 1158 PQEHLQILFEFAKAMQRVVDDFNNDL-LWFNFKLRVGFNIGPVTAGVIGTT 1207 (1318)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhh-hheeeeEEeeccccCccccccccc
Confidence            24688899999999999999998643 345788999999999999999973

>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP

Probab=97.93  E-value=0.0004  Score=48.31  Aligned_cols=60  Identities=25%  Similarity=0.237  Sum_probs=49.9

Q ss_pred             eeeEEEEEeeccChh-hhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEe
Q psy13822          8 FREVTIYFSDIVGFT-TISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG   67 (123)
Q Consensus         8 ~~~~tvlf~di~~~t-~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~f   67 (123)
                      -..+++...||.++| .+++..+|-+....+.+.+..+.+.++++|+...-.-||-+|++.
T Consensus       125 d~~v~iAH~DI~d~T~~~Td~~~~ydt~~~I~~l~~~l~~~~~~~G~L~fylGGDNi~~v~  185 (246)
T PF05165_consen  125 DGYVQIAHFDINDSTGTYTDEESPYDTYLEIEDLYAKLMKYLEKYGSLAFYLGGDNIMAVC  185 (246)
T ss_dssp             S--EEEEEEEETTHHHHTTTTS-HHHHHHHHHHHHHHHHHHHHTTT---EEEETTEEEEE-
T ss_pred             CCceEEEEEeeeccchhhhcccChHHHHHHHHHHHHHHHHHHHhcCCEEEEecCceEEEEC
Confidence            456899999999999 999999999999999999999999999999988888899999987

The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.

>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]

Probab=97.55  E-value=0.002  Score=44.25  Aligned_cols=61  Identities=18%  Similarity=0.163  Sum_probs=55.2

Q ss_pred             eeEEEEEeeccChh-hhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCC
Q psy13822          9 REVTIYFSDIVGFT-TISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGL   69 (123)
Q Consensus         9 ~~~tvlf~di~~~t-~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~   69 (123)
                      .-+.+...|+.+.| .++...+|-+....+++....+.+.+.++|+...-.-||.+|++.+.
T Consensus       130 g~v~IAH~Dvn~~Tgt~Td~~~~~~t~~~I~~~~~~L~~~l~k~gal~fflGGDN~ma~~p~  191 (250)
T COG2429         130 GYVQIAHFDVNDATGTYTDIVSPYDTYTEIQRVYATLMRFLEKIGALLFFLGGDNIMAVCPG  191 (250)
T ss_pred             CceEEEEEeeecchhhhhcccchhHHHHHHHHHHHHHHHHHHhcCcEEEEecCcceEEECCC
Confidence            35788999999999 88999999999999999999999999999998887889999999844

>PRK10245 adrA diguanylate cyclase AdrA; Provisional

Probab=97.52  E-value=0.0024  Score=47.17  Aligned_cols=98  Identities=17%  Similarity=0.177  Sum_probs=69.7

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL   87 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~   87 (123)
                      .++.+++++||.+|..+.+..+.+.--.++.++...+.+.+.. +..+-++.||.+.++...  .   ....+.+.+-.+
T Consensus       234 ~~~~~ll~idId~Fk~INd~~Gh~~GD~lL~~vA~~L~~~l~~-~d~laRlggdeFavll~~--~---~~~~a~~~~~rl  307 (366)
T PRK10245        234 HRDATLLIIDIDHFKSINDTWGHDVGDEAIVALTRQLQITLRG-SDVIGRFGGDEFAVIMSG--T---PAESAITAMSRV  307 (366)
T ss_pred             CCCEEEEEEECCcchHHHHhhCchHHHHHHHHHHHHHHHhCCC-CCEEEEEcCcEEEEEeCC--C---CHHHHHHHHHHH
Confidence            4568999999999999999998888888888888888887755 457788999999988732  1   223345555666


Q ss_pred             HHHhhhhhhcCCCCCceeEEEeee
Q psy13822         88 LHHSGRFKIRHLPYTPLRLRIGLH  111 (123)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~rIGi~  111 (123)
                      ++.++...........+++.||+.
T Consensus       308 ~~~l~~~~~~~~~~i~~s~SiGia  331 (366)
T PRK10245        308 HEGLNTLRLPNAPQVTLRISVGVA  331 (366)
T ss_pred             HHHHhhcccCCCCceEEEEEEEEE
Confidence            666665443322233566777775

>PF00990 GGDEF: GGDEF domain; InterPro: IPR000160 This domain appears to be ubiquitous in bacteria and is often linked to a regulatory domain, such as a phosphorylation receiver or oxygen sensing domain

Probab=97.42  E-value=0.0012  Score=41.86  Aligned_cols=103  Identities=11%  Similarity=0.011  Sum_probs=69.7

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL   87 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~   87 (123)
                      ....++++++|.++..+....+.+..-.++..+...+...+.. +..+.++.+|.+++++..  ...+.+....+....+
T Consensus        30 ~~~~~l~~i~i~~~~~l~~~~G~~~~~~~l~~i~~~L~~~~~~-~~~~~r~~~~~f~il~~~--~~~~~~~~~~~~~~~~  106 (161)
T PF00990_consen   30 GEPFALVLIDIDNLDELNEKYGYEVGDEILRQIAKRLKKQLRE-SDILARLGDDEFAILLPD--TDSEEAEELAERLERL  106 (161)
T ss_dssp             TSEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TSEEEEEETTEEEEEEET--CTHHHHHHHHHHHHHH
T ss_pred             CCCceEEEEeccccccccccccccccccccccccccccccccc-ccccccccchheeecccc--cccccchhhhhhhhhh
Confidence            4678999999999999999888888888888888888888777 667788899999888732  2223344555555555


Q ss_pred             HHHhhhhhhcCCCCCceeEEEeeecC
Q psy13822         88 LHHSGRFKIRHLPYTPLRLRIGLHTG  113 (123)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~rIGi~~G  113 (123)
                      .+.+............+.+.+|+...
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~G~~~~  132 (161)
T PF00990_consen  107 IDELNEPIDIDGIEVHLTLSIGIAVY  132 (161)
T ss_dssp             HHHHCCEEESTTEEEECEEEEEEEEE
T ss_pred             hhhcccccccccccccccccceEEEe
Confidence            54444321111111245666666554

Its function is to synthesize cyclic di-GMP, which is used as an intracellular signalling molecule in a wide variety of bacteria [,]. Enzymatic activity can be strongly influenced by the adjacent domains. Processes regulated by this domain include exopolysaccharide synthesis, biofilm formation, motility and cell differentiation. Structural studies of PleD from Caulobacter crescentus show that this domain forms a five-stranded beta sheet surrounded by helices, similar to the catalytic core of adenylate cyclase [].; PDB: 3IGN_A 3BRE_B 3EZU_A 3ICL_B 3PJX_A 3PJW_A 3HVW_A 3HVA_B 3I5C_B 3I5B_B ....

>smart00267 GGDEF diguanylate cyclase

Probab=97.35  E-value=0.0079  Score=37.83  Aligned_cols=97  Identities=14%  Similarity=0.135  Sum_probs=66.5

Q ss_pred             eEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHHHH
Q psy13822         10 EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLH   89 (123)
Q Consensus        10 ~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~~~   89 (123)
                      ..+++.++|.+|..+....+.+....++..+...+.+.+.. +..+.++.+|.++++....     ....+...+..+.+
T Consensus        34 ~~~l~~i~i~~~~~~~~~~g~~~~~~~l~~i~~~l~~~~~~-~~~~~r~~~~~f~ii~~~~-----~~~~~~~~~~~l~~  107 (163)
T smart00267       34 PFALLLIDLDNFKDINDTYGHAVGDELLQEVAQRLSSCLRP-GDLLARLGGDEFALLLPET-----SLEEAIALAERILQ  107 (163)
T ss_pred             eEEEEEEEccccchhhhccCchhHHHHHHHHHHHHHHhcCC-CCEEEEecCceEEEEecCC-----CHHHHHHHHHHHHH
Confidence            38899999999999999999999999999998888888766 4577778888888887332     12234444555555


Q ss_pred             HhhhhhhcCCCCCceeEEEeeec
Q psy13822         90 HSGRFKIRHLPYTPLRLRIGLHT  112 (123)
Q Consensus        90 ~~~~~~~~~~~~~~l~~rIGi~~  112 (123)
                      .+............+.+.+|+..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~g~~~  130 (163)
T smart00267      108 QLREPIIIHGIPLYLTISIGVAA  130 (163)
T ss_pred             HHhCccccCCcEEEEEEEEEEEe
Confidence            55443222211224666666654

Diguanylate cyclase, present in a variety of bacteria

>PRK02240 GTP cyclohydrolase III; Provisional

Probab=97.30  E-value=0.008  Score=42.13  Aligned_cols=60  Identities=17%  Similarity=0.138  Sum_probs=51.5

Q ss_pred             eeeEEEEEeeccChhhhcc-CCCHHHHHHHHHHHHHHHHHHHhh-cCeEEEeeeCcEEEEEe
Q psy13822          8 FREVTIYFSDIVGFTTISA-YSTPFEVVDLLNDLYTCFDATINA-YNVYKVETIGDAYMVVG   67 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~-~~~~~~~~~~l~~~~~~~~~~v~~-~gg~~~~~~Gd~~~~~f   67 (123)
                      -..+++...||.++|.... ..+|-+....+++.+..+.+.+.+ +|+.-.-.-||-+|++.
T Consensus       132 ~~~v~iaH~Di~~~T~~~td~~~~~dt~~~i~~~~~~l~~~~~~~~g~l~ff~GGDN~~~~~  193 (254)
T PRK02240        132 DGYVQIAHFDINDITGTYTDIENAFDTFLEIEQAYLALMRELRKAHDALSFFVGGDNFMAPC  193 (254)
T ss_pred             CCceEEEEEeeecccceeeccCchhHHHHHHHHHHHHHHHHHHHhcCcEEEEecCceEEEEC
Confidence            5678999999999999865 448989888889988888888888 88877777799999997

>COG2199 c-di-GMP synthetase (diguanylate cyclase, GGDEF domain) [Signal transduction mechanisms]

Probab=97.12  E-value=0.018  Score=37.78  Aligned_cols=100  Identities=11%  Similarity=0.048  Sum_probs=69.5

Q ss_pred             eeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy13822          9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL   88 (123)
Q Consensus         9 ~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~~   88 (123)
                      ...+++++||.+|-.+-+..+...--.+|..+...+...+.... .+-++-||.+.+++....     ...+...+-.++
T Consensus        50 ~~~~l~~iDiD~Fk~iND~~Gh~~GD~vL~~va~~L~~~~~~~~-~~~R~gGdEF~i~l~~~~-----~~~~~~~~~~l~  123 (181)
T COG2199          50 EPLALLLLDLDHFKQINDTYGHAAGDEVLREVARRLRSNLREGD-LVARLGGDEFAVLLPGTS-----LEEAARLAERIR  123 (181)
T ss_pred             CCeEEEEEeCcCCccccccccchHHHHHHHHHHHHHHHhcCCCC-EEEEeccceeEEEeCCCC-----HHHHHHHHHHHH
Confidence            46899999999999988788877777888888888888887766 888899999999984432     444555555555


Q ss_pred             HHhhhhhhcCCCCCceeEEEeeecCc
Q psy13822         89 HHSGRFKIRHLPYTPLRLRIGLHTGR  114 (123)
Q Consensus        89 ~~~~~~~~~~~~~~~l~~rIGi~~G~  114 (123)
                      ..+...........++.+.||+.+-+
T Consensus       124 ~~~~~~~~~~~~~~~~t~siGi~~~~  149 (181)
T COG2199         124 AALEEPFFLGGEELRVTVSIGVALYP  149 (181)
T ss_pred             HHHHcccccCCceEEEEEEEEEEecC
Confidence            55544332110122667777766543

>cd01949 GGDEF Diguanylate-cyclase (DGC) or GGDEF domain

Probab=97.04  E-value=0.021  Score=35.64  Aligned_cols=60  Identities=13%  Similarity=0.159  Sum_probs=49.9

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeC
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG   68 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg   68 (123)
                      ....+++.+++.+|..+....+.+....++..+...+.+.+.. +..+..+.++.++++..
T Consensus        29 ~~~~~l~~i~i~~~~~i~~~~g~~~~~~~l~~~~~~l~~~~~~-~~~~~~~~~~~f~~l~~   88 (158)
T cd01949          29 GRPLALLLIDIDHFKQINDTYGHAAGDEVLKEVAERLRSSLRE-SDLVARLGGDEFAILLP   88 (158)
T ss_pred             CCeEEEEEEEchhhhHHHHhhChHhHHHHHHHHHHHHHHhCCC-CCEEEEecCCeEEEEeC
Confidence            3568899999999999999999988888999988888887755 45677777888888873

Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.

>PRK09894 diguanylate cyclase; Provisional

Probab=96.81  E-value=0.043  Score=38.75  Aligned_cols=99  Identities=11%  Similarity=0.088  Sum_probs=66.2

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL   87 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~   87 (123)
                      .+..+++++||.+|..+....+...--.+|..+...+.+.+... ..+-++-||.+++++..  .   ....+...+-.+
T Consensus       156 ~~~~~l~~i~id~f~~in~~~G~~~gd~~L~~ia~~l~~~~~~~-~~~~R~~g~~F~ill~~--~---~~~~~~~~~~~l  229 (296)
T PRK09894        156 PQNLYLALLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRDY-ETVYRYGGEEFIICLKA--A---TDEEACRAGERI  229 (296)
T ss_pred             CCcEEEEEEECccccHHHHccCcHHHHHHHHHHHHHHHHhCCCC-CEEEEEcCCeEEEEeCC--C---CHHHHHHHHHHH
Confidence            34588999999999999999998888888888888888877554 46778889999888632  1   123344455555


Q ss_pred             HHHhhhhhhcCC-CCCceeEEEeeec
Q psy13822         88 LHHSGRFKIRHL-PYTPLRLRIGLHT  112 (123)
Q Consensus        88 ~~~~~~~~~~~~-~~~~l~~rIGi~~  112 (123)
                      ++.+........ ....+.+.||+..
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~siGv~~  255 (296)
T PRK09894        230 RQLIANHAITHSDGRINITATFGVSR  255 (296)
T ss_pred             HHHHHhCCcccCCceEEEEEEEEEEE
Confidence            555543222111 1135566666653

>PRK02240 GTP cyclohydrolase III; Provisional

Probab=96.78  E-value=0.017  Score=40.51  Aligned_cols=57  Identities=19%  Similarity=0.189  Sum_probs=48.6

Q ss_pred             EEEeeccChhhhccCCCH---HHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCC
Q psy13822         13 IYFSDIVGFTTISAYSTP---FEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGL   69 (123)
Q Consensus        13 vlf~di~~~t~l~~~~~~---~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~   69 (123)
                      +..+.|.||-+++..+.|   .++..+-.+++..+.+.+.++||...-+-||-++++.+.
T Consensus         4 it~iqid~YgpWT~t~~prRE~dlQ~lQsrLya~L~~~~~~~ggl~Ff~RgDN~iavtNG   63 (254)
T PRK02240          4 ITLIQIDNYGPWTVTPNPRRESDLQALQSRLYADLAQQFGARDGYVFFTRFDNMIAVTNG   63 (254)
T ss_pred             EEEEEecCCCcCcCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCEEEeccCceEEEEcCC
Confidence            445778899999998876   457777788999999999999999999999999999743

>TIGR00254 GGDEF diguanylate cyclase (GGDEF) domain

Probab=96.75  E-value=0.055  Score=34.27  Aligned_cols=98  Identities=13%  Similarity=0.107  Sum_probs=64.1

Q ss_pred             eeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy13822          9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL   88 (123)
Q Consensus         9 ~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~~   88 (123)
                      ...+++.+++.+|..+....+.+..-.++..+...+.+.+.. +..+.++.++.+++++...  +   ...+...+-.+.
T Consensus        32 ~~~~l~~i~i~~~~~i~~~~G~~~~~~ll~~~a~~l~~~~~~-~~~i~r~~~~~f~il~~~~--~---~~~~~~l~~~i~  105 (165)
T TIGR00254        32 RSFSVLMIDIDNFKKINDTLGHDVGDEVLREVARILQSSVRG-SDVVGRYGGEEFVVILPGT--P---LEDALSKAERLR  105 (165)
T ss_pred             CceEEEEEeccchhHHHHhhChhhHHHHHHHHHHHHHHhcCc-CCEEEEecCCeEEEEeCCC--C---hHHHHHHHHHHH
Confidence            457899999999999999888888888888888888887743 4567778888888886322  1   223334444555


Q ss_pred             HHhhhhhhcCC--CCCceeEEEeeec
Q psy13822         89 HHSGRFKIRHL--PYTPLRLRIGLHT  112 (123)
Q Consensus        89 ~~~~~~~~~~~--~~~~l~~rIGi~~  112 (123)
                      +.+........  ....+.+++|+..
T Consensus       106 ~~~~~~~~~~~~~~~~~~~~~~g~~~  131 (165)
T TIGR00254       106 DAINSKPIEVAGSETLTVTVSIGVAC  131 (165)
T ss_pred             HHHHhCeeccCCCceEEEEEEEEEEE
Confidence            55443322111  1124666677654

The GGDEF domain is named for the motif GG[DE]EF shared by many proteins carrying the domain. There is evidence that the domain has diguanylate cyclase activity. Several proteins carrying this domain also carry domains with functions relating to environmental sensing. These include PleD, a response regulator protein involved in the swarmer-to-stalked cell transition in Caulobacter crescentus, and FixL, a heme-containing oxygen sensor protein.

>PRK11059 regulatory protein CsrD; Provisional

Probab=96.71  E-value=0.052  Score=42.87  Aligned_cols=99  Identities=13%  Similarity=0.124  Sum_probs=71.9

Q ss_pred             eeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822          9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY-NVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL   87 (123)
Q Consensus         9 ~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~-gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~   87 (123)
                      ...+++++|+.+|..+-+..+...--.+|.++-..+...+.++ +..+-++-||.+.++...     .+...+...|-.+
T Consensus       258 ~~~~ll~idid~fk~iNd~~Gh~~gD~~L~~va~~L~~~~~~~~~~~~aR~ggdeFaill~~-----~~~~~a~~~a~~l  332 (640)
T PRK11059        258 AHGVVMLIRLPDFDLLQEEWGESQVEELLFELINLLSTFVMRYPGALLARYSRSDFAVLLPH-----RSLKEADSLASQL  332 (640)
T ss_pred             CcEEEEEEECchHHHHHHhcChHHHHHHHHHHHHHHHHHHhcCCCCEEEEecCCEEEEEeCC-----CChHHHHHHHHHH
Confidence            3578999999999999999999988899999999999998876 556778899999888732     1224455666677


Q ss_pred             HHHhhhhhhcCCCCCceeEEEeeec
Q psy13822         88 LHHSGRFKIRHLPYTPLRLRIGLHT  112 (123)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~rIGi~~  112 (123)
                      ++.+..............+.||+..
T Consensus       333 ~~~i~~~~~~~~~~~~~~~siGia~  357 (640)
T PRK11059        333 LKAVDALPPPKMLDRDDFLHIGICA  357 (640)
T ss_pred             HHHHHhccCCcccCcccEEEEEEEe
Confidence            7666654332222234456777654

>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional

Probab=96.31  E-value=0.081  Score=43.28  Aligned_cols=99  Identities=10%  Similarity=0.161  Sum_probs=76.8

Q ss_pred             eeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy13822          9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL   88 (123)
Q Consensus         9 ~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~~   88 (123)
                      .+.++..+.+.||.+....++..+-..+...+-..+.+-+..|++++-++..|.|++++     +...-....+--.+++
T Consensus       203 ~~~v~g~i~iDNyde~~~~~~~~~~s~l~~~i~~~l~~~~~~~~~~~r~~~~dry~~~~-----~~~~l~~~~~~kF~iL  277 (838)
T PRK14538        203 KTLALAMITFDNLEESLIRYDLSEQSQIQGEYLSALSDFIEPYEGYLKQLIDDRFLLLI-----NRQNLDKMIENKFSIL  277 (838)
T ss_pred             cCcEEEEEEeeCHHHHhcccchHHHHHHHHHHHHHHHHHHHhCCEEEEEecCCcEEEEE-----EHHHHHHHHHhCCcHH
Confidence            34566777788999998888888888888888888999999999999999999999998     2344455555566777


Q ss_pred             HHhhhhhhcCCCCCceeEEEeeecCc
Q psy13822         89 HHSGRFKIRHLPYTPLRLRIGLHTGR  114 (123)
Q Consensus        89 ~~~~~~~~~~~~~~~l~~rIGi~~G~  114 (123)
                      +.++..+..  ...++.+.||+.+|.
T Consensus       278 d~ir~~~~~--~~~~vTLSiGig~g~  301 (838)
T PRK14538        278 DTIRNISHK--YQLKVTLSMGIACWN  301 (838)
T ss_pred             HHHHHhhcC--CCCceEEEEEEeCCC
Confidence            777765443  245788888888874

>PRK09966 putative inner membrane diguanylate cyclase; Provisional

Probab=96.31  E-value=0.091  Score=38.93  Aligned_cols=101  Identities=13%  Similarity=-0.033  Sum_probs=66.1

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL   87 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~   87 (123)
                      ....+++++|+.+|..+-+..+.+..-.++..+...+.+.+..+ ..+-++.||.+.++.....    ....+...+-.+
T Consensus       276 ~~~~~l~~i~id~f~~in~~~G~~~gd~~l~~~a~~L~~~~~~~-~~~~R~~~deF~ill~~~~----~~~~~~~~~~~i  350 (407)
T PRK09966        276 RKTSALLFLDGDNFKYINDTWGHATGDRVLIEIAKRLAEFGGLR-HKAYRLGGDEFAMVLYDVQ----SESEVQQICSAL  350 (407)
T ss_pred             CCceEEEEEECccchHHHhhhchHHHHHHHHHHHHHHHHhCCCC-CEEEEEccceEEEEEcCCC----CHHHHHHHHHHH
Confidence            34578999999999999999998888888888888887766543 5677888999988884321    122344445555


Q ss_pred             HHHhhhhhhc-CCCCCceeEEEeeecC
Q psy13822         88 LHHSGRFKIR-HLPYTPLRLRIGLHTG  113 (123)
Q Consensus        88 ~~~~~~~~~~-~~~~~~l~~rIGi~~G  113 (123)
                      .+.+...... ......+.+.||+...
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~siG~~~~  377 (407)
T PRK09966        351 TQIFNLPFDLHNGHQTTMTLSIGYAMT  377 (407)
T ss_pred             HHHHhCCeeecCCcEEEEEEEEEEEeC
Confidence            5555432111 1112345666666543

>PRK15426 putative diguanylate cyclase YedQ; Provisional

Probab=96.01  E-value=0.17  Score=39.18  Aligned_cols=98  Identities=12%  Similarity=0.065  Sum_probs=66.6

Q ss_pred             eeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy13822          9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL   88 (123)
Q Consensus         9 ~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~~   88 (123)
                      +..+++++||.+|..+-+..+.+.--.+|..+...+...+.. +..+-++-||.|+++....  +   ...+...+-.+.
T Consensus       428 ~~~~l~~idid~fk~iNd~~G~~~GD~~L~~~a~~l~~~~~~-~~~~~R~ggdeF~ill~~~--~---~~~~~~~~~~l~  501 (570)
T PRK15426        428 QPFSVIQLDLDHFKSINDRFGHQAGDRVLSHAAGLISSSLRA-QDVAGRVGGEEFCVVLPGA--S---LAEAAQVAERIR  501 (570)
T ss_pred             CcEEEEEEECcccCHhhHhhChHHHHHHHHHHHHHHHHhCCC-CCEEEeecCcEEEEEeCCC--C---HHHHHHHHHHHH
Confidence            458899999999999999999988888999998888887764 4577788999998887322  1   233444455555


Q ss_pred             HHhhhhhhc--CCCCCceeEEEeeec
Q psy13822         89 HHSGRFKIR--HLPYTPLRLRIGLHT  112 (123)
Q Consensus        89 ~~~~~~~~~--~~~~~~l~~rIGi~~  112 (123)
                      +.+......  ......+.+.+|+..
T Consensus       502 ~~~~~~~~~~~~~~~~~~~~s~Gv~~  527 (570)
T PRK15426        502 LRINEKEILVAKSTTIRISASLGVSS  527 (570)
T ss_pred             HHHhcccccccCCcEEEEEEEEEEEE
Confidence            555432111  111124566666654

>PRK13561 putative diguanylate cyclase; Provisional

Probab=95.93  E-value=0.13  Score=40.56  Aligned_cols=81  Identities=7%  Similarity=0.034  Sum_probs=59.6

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL   87 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~   87 (123)
                      ....+++++|+.+|..+-+..+.+.--.++.++...+.+.+... ..+-++.||.+.++....    +....+...+-.+
T Consensus       256 ~~~~~l~~idld~f~~in~~~G~~~gD~lL~~ia~~L~~~~~~~-~~~aRl~gdeF~ill~~~----~~~~~~~~~~~~i  330 (651)
T PRK13561        256 KQTTALMIITCETLRDTAGVLKEAQREILLLTLVEKLKSVLSPR-MVLAQISGYDFAIIANGV----KEPWHAITLGQQV  330 (651)
T ss_pred             CCCeEEEEEECCchHHHHHhhChHHHHHHHHHHHHHHHHhCCCC-cEEEEEeCCEEEEEECCC----CCHHHHHHHHHHH
Confidence            34678999999999999999998888888999988888887654 577889999999887322    2223344445555


Q ss_pred             HHHhhh
Q psy13822         88 LHHSGR   93 (123)
Q Consensus        88 ~~~~~~   93 (123)
                      .+.+..
T Consensus       331 ~~~~~~  336 (651)
T PRK13561        331 LTIINE  336 (651)
T ss_pred             HHHHcC
Confidence            555543

>PRK11829 biofilm formation regulator HmsP; Provisional

Probab=95.79  E-value=0.15  Score=40.25  Aligned_cols=80  Identities=9%  Similarity=0.072  Sum_probs=59.5

Q ss_pred             eeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy13822          9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL   88 (123)
Q Consensus         9 ~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~~   88 (123)
                      ...+++++|+.+|..+-+..+.+.--.+|.++...+.+.+... ..+-++.||.+.++....    +....+...+-.++
T Consensus       261 ~~~~l~~idid~f~~in~~~G~~~gD~lL~~va~~l~~~~~~~-~~~aRl~gdeF~vl~~~~----~~~~~~~~~~~~i~  335 (660)
T PRK11829        261 DHFHLLVIGIETLQEVSGAMSEAQHQQLLLTIVQRIEQCIDDS-DLLAQLSKTEFAVLARGT----RRSFPAMQLARRIM  335 (660)
T ss_pred             CCEEEEEEECCcHHHHHHhhChHHHHHHHHHHHHHHHHhCCCC-cEEEEEeCCEEEEEEcCC----CCHHHHHHHHHHHH
Confidence            4578999999999999999998888888888888888776543 577788999998887322    22234555566666


Q ss_pred             HHhhh
Q psy13822         89 HHSGR   93 (123)
Q Consensus        89 ~~~~~   93 (123)
                      +.+..
T Consensus       336 ~~~~~  340 (660)
T PRK11829        336 SQVTQ  340 (660)
T ss_pred             HHhcC
Confidence            66554

>TIGR02577 cas_TM1794_Crm2 CRISPR-associated protein, Crm2 family

Probab=95.50  E-value=0.57  Score=36.12  Aligned_cols=81  Identities=14%  Similarity=-0.048  Sum_probs=63.2

Q ss_pred             eeeEEEEEeeccChhhhccCC------------------CH---HHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEE
Q psy13822          8 FREVTIYFSDIVGFTTISAYS------------------TP---FEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVV   66 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~------------------~~---~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~   66 (123)
                      ..-.+++.+|-.+.-.+....                  ++   ..+-+.|+.|+....+.+..++|.++-.-||-++++
T Consensus       341 ~~y~Ail~aDGD~mG~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~lS~aL~~f~~~~~~~v~~~~g~~VYaGGDDvlai  420 (482)
T TIGR02577       341 RPYYAILKADGDRMGKLLRGEIRPEEKERIHPKKVKNLTTPAAHVAFSRALAEFSLKAVKIVVNEHGELVYAGGDDVLAL  420 (482)
T ss_pred             CceEEEEEccccchHHHHhCCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHhhhhCeEEEEEccCcEEEE
Confidence            445889999988877766542                  23   566777888888888888888899999999999999


Q ss_pred             eCCCCCCchHHHHHHHHHHHHHHHhhhhhh
Q psy13822         67 GGLPVRIPDHADQIATMALDLLHHSGRFKI   96 (123)
Q Consensus        67 fg~~~~~~~~~~~a~~~al~~~~~~~~~~~   96 (123)
                      .        ....|+.+|.++++.......
T Consensus       421 ~--------p~~~al~~a~~l~~~F~~~~~  442 (482)
T TIGR02577       421 L--------PVDTALDVAKELRKEFRESLE  442 (482)
T ss_pred             c--------cHHHHHHHHHHHHHHHHHHhh
Confidence            6        456699999999988877643

This model represent a Crm2 family of the CRISPR-associated RAMP module, a set of six genes recurring found together in prokaryotic genomes. This gene cluster is found only in species with CRISPR repeats, usually near the repeats themselves. Because most of the six (but not this family) contain RAMP domains, and because its appearance in a genome appears to depend on other CRISPR-associated Cas genes, the set is designated the CRISPR RAMP module. This protein, typified by TM1794 from Thermotoga maritima, is designated Crm2, for CRISPR RAMP Module protein 2.

>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]

Probab=95.45  E-value=0.2  Score=38.00  Aligned_cols=103  Identities=16%  Similarity=0.160  Sum_probs=72.3

Q ss_pred             ceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHH
Q psy13822          7 DFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALD   86 (123)
Q Consensus         7 ~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~   86 (123)
                      +.+..+++++||.+|-..-+..+..---+.|..+...+.+.+ +.-..+-+|-|+.|++++.     ..+...|+..|=.
T Consensus       298 ~~~pls~~m~DID~FK~iNDt~GH~~GDevLr~vA~~L~~~v-r~~Dl~aRyGGEEF~vvlp-----~t~~~~Ai~iaer  371 (435)
T COG3706         298 EGRPLSLLMLDIDDFKEINDTYGHDVGDEVLRQVARRLRQTV-RGLDLVARYGGEEFAVVLP-----DTDLEAAIAIAER  371 (435)
T ss_pred             cCCCeeEEEEecccccccccccCCccHHHHHHHHHHHHHhhc-cccccceecCCeeEEEEec-----CCCHHHHHHHHHH
Confidence            467799999999999988777655444456666666666666 4456677788888888872     2336778888888


Q ss_pred             HHHHhhhhhhcCCC---CCceeEEEeeecCce
Q psy13822         87 LLHHSGRFKIRHLP---YTPLRLRIGLHTGRP  115 (123)
Q Consensus        87 ~~~~~~~~~~~~~~---~~~l~~rIGi~~G~v  115 (123)
                      ++..++........   ...+.+-||++++.-
T Consensus       372 Ir~~i~~~~~~~~~~~~~~~~TiSiGVa~~~p  403 (435)
T COG3706         372 IRQKINELPFVHELSREPLEVTISIGVAEGKP  403 (435)
T ss_pred             HHHHHhcCCccccccccceEEEEEEEEEecCC
Confidence            88888766442211   235788888887653

>PRK10060 RNase II stability modulator; Provisional

Probab=95.31  E-value=0.28  Score=39.10  Aligned_cols=99  Identities=16%  Similarity=0.106  Sum_probs=63.7

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL   87 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~   87 (123)
                      ....+++++|+.+|..+-+..+...--.+|.++-..+...+... ..+-++-||.|.++...  .   ....+...+-.+
T Consensus       264 ~~~~~ll~idld~fk~iNd~~G~~~gD~lL~~va~~L~~~~~~~-d~vaRlggdeF~ill~~--~---~~~~~~~~~~~i  337 (663)
T PRK10060        264 NNQVGIVYLDLDNFKKVNDAYGHMFGDQLLQDVSLAILSCLEED-QTLARLGGDEFLVLASH--T---SQAALEAMASRI  337 (663)
T ss_pred             CCcEEEEEEECcchhHHHHhhCcHHHHHHHHHHHHHHHHhCCCC-CEEEEEcCCEEEEEEcC--C---CHHHHHHHHHHH
Confidence            34678999999999988888887777778888888887766543 57888899999888732  1   122344445555


Q ss_pred             HHHhhhhhhcCCCCCceeEEEeeec
Q psy13822         88 LHHSGRFKIRHLPYTPLRLRIGLHT  112 (123)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~rIGi~~  112 (123)
                      ++.+.....-......+.+.||+..
T Consensus       338 ~~~l~~~~~~~~~~~~~~~siGia~  362 (663)
T PRK10060        338 LTRLRLPFRIGLIEVYTGCSIGIAL  362 (663)
T ss_pred             HHHcCCCEEECCEEEEEEEEEEEEE
Confidence            5555432111111123455666643

>PF10851 DUF2652: Protein of unknown function (DUF2652) ; InterPro: IPR020503 This entry contains proteins with no known function

Probab=94.97  E-value=0.47  Score=29.30  Aligned_cols=78  Identities=18%  Similarity=0.131  Sum_probs=45.6

Q ss_pred             HHHHHhhcCe-EEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHhhhhhhcC-------CCCCceeEEEeeecCce
Q psy13822         44 FDATINAYNV-YKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRH-------LPYTPLRLRIGLHTGRP  115 (123)
Q Consensus        44 ~~~~v~~~gg-~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~~~~~~~~~~~~-------~~~~~l~~rIGi~~G~v  115 (123)
                      +..+++...| .+-+..||+++.+-.......+-.++...+-.+..+..+.+....       ....+++++.-+|+|++
T Consensus         5 LE~iI~an~~l~lseiEGDAilFy~~~~~~~~~v~~q~~~M~~aF~~~~~~~~~~~~C~C~aC~~~~~LsLKfV~H~Ge~   84 (116)
T PF10851_consen    5 LEAIIDANLGLKLSEIEGDAILFYKYGKDTSVEVCRQCERMRRAFHQRREQLKKDRICQCGACAQLINLSLKFVAHYGEV   84 (116)
T ss_pred             HHHHHccCCCcEEEEecccEEEEEcCCCCccHHHHHHHHHHHHHHHHHHHHHhhcccCCchhhhhhhcceEEEEEEeeee
Confidence            4556666644 778899999886642221212233333333333444444443322       33458999999999998


Q ss_pred             eEEeec
Q psy13822        116 VSKHLR  121 (123)
Q Consensus       116 ~~g~iG  121 (123)
                      ..=.+|
T Consensus        85 ~~~~Vk   90 (116)
T PF10851_consen   85 AQQKVK   90 (116)
T ss_pred             eeeeec
Confidence            766655

>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional

Probab=94.86  E-value=0.36  Score=38.74  Aligned_cols=99  Identities=15%  Similarity=0.161  Sum_probs=64.6

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL   87 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~   87 (123)
                      ....+++++||.+|..+.+..+....-.+|.++-..+.+.+.. +..+-++.||.++++...  .   ....+...+-.+
T Consensus       401 ~~~~~l~~i~i~~~~~in~~~G~~~~d~ll~~~a~~l~~~~~~-~~~~~r~~~~eF~il~~~--~---~~~~~~~~~~~l  474 (799)
T PRK11359        401 AVSPVVYLIGVDHFQDVIDSLGYAWADQALLEVVNRFREKLKP-DQYLCRIEGTQFVLVSLE--N---DVSNITQIADEL  474 (799)
T ss_pred             CCCEEEEEEECCcHHHHHHHhCcHHHHHHHHHHHHHHHHhCCC-CCEEEEEcCCEEEEEEcC--C---CHHHHHHHHHHH
Confidence            3568899999999999999998888888888888888887754 367788889999888732  1   122344444444


Q ss_pred             HHHhhhhhhcCCCCCceeEEEeeec
Q psy13822         88 LHHSGRFKIRHLPYTPLRLRIGLHT  112 (123)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~rIGi~~  112 (123)
                      .+.+............+.+.||+.+
T Consensus       475 ~~~~~~~~~~~~~~~~~~~sig~~~  499 (799)
T PRK11359        475 RNVVSKPIMIDDKPFPLTLSIGISY  499 (799)
T ss_pred             HHHhcCCEEECCEEEEEEEEEEEEe
Confidence            4444332111111124556666654

>PRK09776 putative diguanylate cyclase; Provisional

Probab=94.82  E-value=0.52  Score=39.22  Aligned_cols=98  Identities=10%  Similarity=0.080  Sum_probs=65.5

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL   87 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~   87 (123)
                      ..+.+++++||.+|..+-+..+...--.+|.++-..+.+.+... ..+-++-||.+.++...  .+   ...+...+-.+
T Consensus       694 ~~~~~l~~idid~fk~in~~~G~~~gd~~L~~~a~~l~~~~~~~-~~~~R~~gdeF~vl~~~--~~---~~~~~~~~~~l  767 (1092)
T PRK09776        694 HQRHALVFIDLDRFKAVNDSAGHAAGDALLRELASLMLSMLRSS-DVLARLGGDEFGLLLPD--CN---VESARFIATRI  767 (1092)
T ss_pred             CCcEEEEEEECcchHHHHHhhChhhHHHHHHHHHHHHHHhCCCc-CEEEEecCcEEEEEeCC--CC---hHHHHHHHHHH
Confidence            34588999999999999998888888888888888888777544 46778889999888732  12   23344555566


Q ss_pred             HHHhhhhhhcC-CCCCceeEEEeee
Q psy13822         88 LHHSGRFKIRH-LPYTPLRLRIGLH  111 (123)
Q Consensus        88 ~~~~~~~~~~~-~~~~~l~~rIGi~  111 (123)
                      ++.+....... ....++.+.||+.
T Consensus       768 ~~~~~~~~~~~~~~~~~~~~siGi~  792 (1092)
T PRK09776        768 ISAINDYHFPWEGRVYRVGASAGIT  792 (1092)
T ss_pred             HHHHhhCCcccCCceEEEEEEEEEE
Confidence            66554432211 1122456666654

>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]

Probab=94.70  E-value=0.79  Score=36.18  Aligned_cols=98  Identities=10%  Similarity=0.148  Sum_probs=71.6

Q ss_pred             EEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHHHHH
Q psy13822         11 VTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHH   90 (123)
Q Consensus        11 ~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~~~~   90 (123)
                      ..+..+.+.||-..+..++.++...+-+..-+.+.+..+.|+-+.-++.+|.++++-.     ..--.....--..+++.
T Consensus       175 ~vl~~i~vDNyDe~t~~~~d~~rs~inS~V~s~l~~~a~~~~if~rr~s~drf~~~~~-----~~~L~~l~~~kF~iLd~  249 (655)
T COG3887         175 PVLGIISVDNYDEVTQGLSDSDRSQINSFVTSFLEEWATEYNIFLRRYSSDRFYAFTN-----YKILEKLEEDKFSILDE  249 (655)
T ss_pred             ceEEEEEeccHHHHhcCCChhhHHHHHHHHHHHHHHHHHHhhhhheeecCCeEEEEec-----HHHHHHHHHhhhHHHHH
Confidence            3455666778999999888877777777777778888889999999999999999972     23334455555566666


Q ss_pred             hhhhhhcCCCCCceeEEEeeecCce
Q psy13822         91 SGRFKIRHLPYTPLRLRIGLHTGRP  115 (123)
Q Consensus        91 ~~~~~~~~~~~~~l~~rIGi~~G~v  115 (123)
                      +++...  ....++.+.||+.+|.-
T Consensus       250 ~RE~s~--~~~ipLTLSiGvg~g~~  272 (655)
T COG3887         250 FREESS--QKNIPLTLSIGVGYGEN  272 (655)
T ss_pred             HHHHhh--ccCcceEEEEEeccCcc
Confidence            555432  23568999999999864

>TIGR02578 cas_TM1811_Csm1 CRISPR-associated protein, Csm1 family

Probab=92.78  E-value=3.1  Score=33.41  Aligned_cols=92  Identities=17%  Similarity=0.244  Sum_probs=63.1

Q ss_pred             eeEEEEEeeccChhhhccCC----C-H---HHHHHHHHHHHHH-HHHHHhhc----CeEEEeeeCcEEEEEeCCCCCCch
Q psy13822          9 REVTIYFSDIVGFTTISAYS----T-P---FEVVDLLNDLYTC-FDATINAY----NVYKVETIGDAYMVVGGLPVRIPD   75 (123)
Q Consensus         9 ~~~tvlf~di~~~t~l~~~~----~-~---~~~~~~l~~~~~~-~~~~v~~~----gg~~~~~~Gd~~~~~fg~~~~~~~   75 (123)
                      ..+++|-+|+.+.-.+-...    . .   ..+-+.|+.||.. +..+++.+    .++++-.-||-++++-        
T Consensus       521 ~~lavl~~D~DnlG~~f~~g~~~~~~~s~~~~lS~~l~~fF~~~v~~i~~~~~~~~~~~~VYaGGDDv~~ig--------  592 (648)
T TIGR02578       521 KKLGVLKMDVDNLGEIFASGLKRPTRISRLATLSRQLELFFKLYLLHLAEDKRNKRNLYVVYSGGDDLFLIG--------  592 (648)
T ss_pred             ceEEEEEccccCHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCEEEEEEccccEEEEc--------
Confidence            56899999998866665332    1 1   3455566665554 56667666    7888888899998885        


Q ss_pred             HHHHHHHHHHHHHHHhhhhhhcCCCCCceeEEEeeec
Q psy13822         76 HADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHT  112 (123)
Q Consensus        76 ~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~  112 (123)
                      +...++.+|.++++...+....    ..+.+..||..
T Consensus       593 ~~~~~l~~A~~i~~~F~~~~~~----~~~TlSaGi~i  625 (648)
T TIGR02578       593 PWNAVLELASDIREYFEKFTCR----DKITISAGVVV  625 (648)
T ss_pred             cHHHHHHHHHHHHHHHHHHhCC----CCeeEEEEEEE
Confidence            3467889999999998876432    34555555543

The family is designated Csm2, for CRISPR/Cas Subtype Mtube Protein 2. A typical example is TM1811 from Thermotoga maritima. CRISPR are Clustered Regularly Interspaced Short Palindromic Repeats. This protein family belongs to a conserved gene cluster regularly found near CRISPR repeats.

>PF05165 GGDN: GGDN family; InterPro: IPR007839 GTP cyclohydrolase III catalyses the formation of 2-amino-5-formylamino-6- ribofuranosylamino-4(3H)-pyrimidinone ribonucleotide monophosphate and inorganic phosphate from GTP

Probab=91.94  E-value=3.2  Score=29.24  Aligned_cols=54  Identities=13%  Similarity=0.135  Sum_probs=42.5

Q ss_pred             EeeccChhhhccCCCHH---HHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeC
Q psy13822         15 FSDIVGFTTISAYSTPF---EVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG   68 (123)
Q Consensus        15 f~di~~~t~l~~~~~~~---~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg   68 (123)
                      .+.|.||-++++.+.|.   ++..+-.+++..+.+.+...||.+..+.=|.++++-+
T Consensus         3 ~i~l~~Y~eWTetlg~~RE~~iQ~lQa~l~~~l~~~~~~~~g~~~~~R~D~~iavtn   59 (246)
T PF05165_consen    3 LIQLDNYREWTETLGPDREWDIQTLQARLYADLQQFFSSRGGLVFPTRYDNMIAVTN   59 (246)
T ss_dssp             EEEETTHHHHCCSSS---HHHHHHHHHHHHHHHHHHHHTTT-EEE-TTSSEEEEE-T
T ss_pred             eEEecCCccCcCCCCCchHHHHHHHHHHHHHHHHHHHHhcCCEEeeeeeeeEEEeec
Confidence            36788999999999773   4666668899999999999999999999999999974

The enzyme also has an independent pyrophosphate phosphohydrolase activity. The proteins are 200-270 amino acids in length.; GO: 0003933 GTP cyclohydrolase activity, 0009058 biosynthetic process; PDB: 2QV6_B.

>COG2429 Archaeal GTP cyclohydrolase III [Nucleotide transport and metabolism]

Probab=89.65  E-value=1.8  Score=30.10  Aligned_cols=55  Identities=13%  Similarity=0.169  Sum_probs=45.0

Q ss_pred             EEEeeccChhhhccCCCH---HHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEe
Q psy13822         13 IYFSDIVGFTTISAYSTP---FEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG   67 (123)
Q Consensus        13 vlf~di~~~t~l~~~~~~---~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~f   67 (123)
                      +..+-|.||-.+++...|   -++..+-++++..+.+.+..++|++..+.=|-++++-
T Consensus         4 it~Iqld~YgpWT~~p~prRE~dlQtlQarlyadl~~~~~~~~g~vf~~RfDnmlait   61 (250)
T COG2429           4 ITLIQLDNYGPWTETPGPRREWDLQTLQARLYADLQKIFGGRGGLVFFTRFDNMLAIT   61 (250)
T ss_pred             EEEEEecCcCcccCcCCCchHHHHHHHHHHHHHHHHHHHhccCCeeeeeehhhhhHhh
Confidence            445678899999998877   4466677889999999999999999888888777765

>PF11294 DUF3095: Protein of unknown function (DUF3095); InterPro: IPR021445 Some members in this bacterial family of proteins are annotated as adenylyl cyclase however this cannot be confirmed

Probab=88.42  E-value=4.5  Score=30.31  Aligned_cols=71  Identities=17%  Similarity=0.049  Sum_probs=37.0

Q ss_pred             eEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEe--eeCcEEEEEeCCCCCCchHHHHHHHHHH
Q psy13822         10 EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVE--TIGDAYMVVGGLPVRIPDHADQIATMAL   85 (123)
Q Consensus        10 ~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~--~~Gd~~~~~fg~~~~~~~~~~~a~~~al   85 (123)
                      +-.|..+||+|||.....=.-+++...=-.....   ++...++.-.-  |-|||..+.-  |....+.++.|+....
T Consensus        26 dW~v~vaDIv~ST~AIa~GrYK~VNm~Ga~~IaA---v~N~~~~~~~PFvFGGDGA~~~v--Pp~~~~~ar~aLa~~~   98 (373)
T PF11294_consen   26 DWFVGVADIVNSTKAIAAGRYKDVNMAGAAVIAA---VLNALGGRDFPFVFGGDGATFAV--PPSLLEAAREALAAVR   98 (373)
T ss_pred             CcEEEEeehhccHHHHHcCCcccchHHHHHHHHH---HHhcccCCCCCeEecCCCeEEec--CHHHHHHHHHHHHHHH
Confidence            4578899999999987653333322221222222   22333443333  5689887765  3333344444444333

Currently no function is known.

>PRK09581 pleD response regulator PleD; Reviewed

Probab=86.84  E-value=11  Score=27.98  Aligned_cols=97  Identities=11%  Similarity=0.062  Sum_probs=54.5

Q ss_pred             eEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHHHH
Q psy13822         10 EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLLH   89 (123)
Q Consensus        10 ~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~~~   89 (123)
                      ..+++++++.+|..+....+....-.++..+...+.+.+..+ ..+.+..++.++++....  ..+   .+-..+-.+.+
T Consensus       323 ~~~~l~i~i~~~~~i~~~~g~~~~~~~l~~i~~~l~~~~~~~-~~~~r~~~~~f~ill~~~--~~~---~~~~~~~~l~~  396 (457)
T PRK09581        323 PLSLMMIDIDHFKKVNDTYGHDAGDEVLREFAKRLRNNIRGT-DLIARYGGEEFVVVMPDT--DIE---DAIAVAERIRR  396 (457)
T ss_pred             cEEEEEEecchhhHhHHhhChhhHHHHHHHHHHHHHhhCCCC-cEEEEecCCEEEEEeCCC--CHH---HHHHHHHHHHH
Confidence            357888999888887666665555556666666666666543 455667778888776332  111   23333444554


Q ss_pred             HhhhhhhcCC-CC--CceeEEEeeec
Q psy13822         90 HSGRFKIRHL-PY--TPLRLRIGLHT  112 (123)
Q Consensus        90 ~~~~~~~~~~-~~--~~l~~rIGi~~  112 (123)
                      .+........ ..  ..+++.||+..
T Consensus       397 ~~~~~~~~~~~~~~~~~~~~~iGi~~  422 (457)
T PRK09581        397 KIAEEPFIISDGKERLNVTVSIGVAE  422 (457)
T ss_pred             HHHhCccccCCCCcceEEEEEEEEEE
Confidence            4432211110 11  35667777654

>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes

Probab=84.66  E-value=5.5  Score=23.51  Aligned_cols=39  Identities=5%  Similarity=-0.011  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHH
Q psy13822         39 DLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIA   81 (123)
Q Consensus        39 ~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~   81 (123)
                      .+-..+.++.+.+||.++...|...++-|..    .+.|.+|.
T Consensus        18 ~I~~RL~qLsdNCGGkVl~v~~~tAilrF~~----~~~A~RA~   56 (90)
T PF11608_consen   18 SIKNRLRQLSDNCGGKVLSVSGGTAILRFPN----QEFAERAQ   56 (90)
T ss_dssp             HHHHHHHHHHHTTT--EEE--TT-EEEEESS----HHHHHHHH
T ss_pred             HHHHHHHHHhhccCCEEEEEeCCEEEEEeCC----HHHHHHHH
Confidence            4456777888889999999999999999933    36666554

Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	123
3uvj_A	225	Crystal Structure Of The Catalytic Domain Of The He		3e-23
3et6_B	190	The Crystal Structure Of The Catalytic Domain Of A		3e-21
3et6_A	190	The Crystal Structure Of The Catalytic Domain Of A		3e-21
1yk9_A	204	Crystal Structure Of A Mutant Form Of The Mycobacte		8e-17
2wz1_A	219	Structure Of The Catalytic Domain Of Human Soluble		2e-16
3uvj_B	220	Crystal Structure Of The Catalytic Domain Of The He		2e-15
1cjk_A	217	Complex Of Gs-Alpha With The Catalytic Domains Of M		1e-13
1cs4_A	225	Complex Of Gs-Alpha With The Catalytic Domains Of M		1e-13
1azs_A	220	Complex Of Gs-Alpha With The Catalytic Domains Of M		1e-13
2w01_A	208	Crystal Structure Of The Guanylyl Cyclase Cya2 Leng		7e-06
3r5g_A	198	Crystal Structure Of The Adenylyl Cyclase Cyab From		1e-04
1wc0_A	219	Soluble Adenylyl Cyclase Cyac From S. Platensis In		1e-04
1wc1_A	226	Soluble Adenylyl Cyclase Cyac From S. Platensis In		1e-04

>pdb|3UVJ|A Chain A, Crystal Structure Of The Catalytic Domain Of The Heterodimeric Human Soluble Guanylate Cyclase 1. Length = 225

Iteration: 1
 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 54/111 (48%), Positives = 68/111 (61%), Gaps = 2/111 (1%)
Query: 3   VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA 62
           V  + F  VT+ FSDIVGFT I +  +P +V+ +LN LYT FD      +VYKVETIGDA
Sbjct: 7   VQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDA 66
Query: 63  YMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
           Y V GGL      HA QIA MAL ++  S      H    P+++RIGLH+G
Sbjct: 67  YCVAGGLHKESDTHAVQIALMALKMMELSDEVMSPH--GEPIKMRIGLHSG 115

>pdb|3ET6|B Chain B, The Crystal Structure Of The Catalytic Domain Of A Eukaryotic Guanylate Cyclase Length = 190

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 73/115 (63%), Gaps = 3/115 (2%)
Query: 10  EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY-NVYKVETIGDAYMVVGG 68
           E T+ FSDIVGFT I++ S+P EV  LL++LY  FDA I  Y  +YKVETIGDAYMVV  
Sbjct: 9   EATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCN 68
Query: 69  LPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK 123
           + V   DHAD +   AL +  H    ++      P+R+R+G+H+G  V+  + +K
Sbjct: 69  VTVPCDDHADVLLEFALRM--HEEASRVASSLGEPVRIRVGMHSGPVVAGVVGRK 121

>pdb|3ET6|A Chain A, The Crystal Structure Of The Catalytic Domain Of A Eukaryotic Guanylate Cyclase Length = 190

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/115 (46%), Positives = 73/115 (63%), Gaps = 3/115 (2%)
Query: 10  EVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY-NVYKVETIGDAYMVVGG 68
           E T+ FSDIVGFT I++ S+P EV  LL++LY  FDA I  Y  +YKVETIGDAYMVV  
Sbjct: 9   EATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCN 68
Query: 69  LPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK 123
           + V   DHAD +   AL +  H    ++      P+R+R+G+H+G  V+  + +K
Sbjct: 69  VTVPCDDHADVLLEFALRM--HEEASRVASSLGEPVRIRVGMHSGPVVAGVVGRK 121

>pdb|1YK9|A Chain A, Crystal Structure Of A Mutant Form Of The Mycobacterial Adenylyl Cyclase Rv1625c Length = 204

Iteration: 1
 Score = 82.0 bits (201), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 40/108 (37%), Positives = 66/108 (61%), Gaps = 2/108 (1%)
Query: 6   EDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMV 65
           + + E ++ F+DIVGFT  ++ + P ++V  L+ LY+ FD  ++ + + K+E  GD+YMV
Sbjct: 6   DKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMV 65
Query: 66  VGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
           V G+P   PDH   +A  ALD+ + + + K       P+ LR+GL TG
Sbjct: 66  VSGVPRPRPDHTQALADFALDMTNVAAQLKDPR--GNPVPLRVGLATG 111

>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble Guanylate Cyclase 1 Beta 3. Length = 219

Iteration: 1
 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 69/123 (56%), Gaps = 10/123 (8%)
Query: 2   PVDPEDFREVTIYFSDIVGFTTISAYSTPFE----VVDLLNDLYTCFDATINAYN---VY 54
           PV  + +  VTI FS IVGF    +     E    +V+LLNDLYT FD   ++     VY
Sbjct: 4   PVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVY 63
Query: 55  KVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGR 114
           KVET+GD YM V GLP     HA  I  +ALD++  +G+ ++       +++ IG+HTG 
Sbjct: 64  KVETVGDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDG---ESVQITIGIHTGE 120
Query: 115 PVS 117
            V+
Sbjct: 121 VVT 123

>pdb|3UVJ|B Chain B, Crystal Structure Of The Catalytic Domain Of The Heterodimeric Human Soluble Guanylate Cyclase 1. Length = 220

Iteration: 1
 Score = 77.8 bits (190), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 48/123 (39%), Positives = 68/123 (55%), Gaps = 10/123 (8%)
Query: 2   PVDPEDFREVTIYFSDIVGFTTISAYSTPFE----VVDLLNDLYTCFDATINAYN---VY 54
           PV  + +  VTI FS IVGF    +     E    +V+LLNDLYT FD   ++     VY
Sbjct: 5   PVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVY 64
Query: 55  KVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGR 114
           KVET+ D YM V GLP     HA  I  +ALD++  +G+ ++       +++ IG+HTG 
Sbjct: 65  KVETVCDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDG---ESVQITIGIHTGE 121
Query: 115 PVS 117
            V+
Sbjct: 122 VVT 124

>pdb|1CJK|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With Adenosine 5'-(Alpha Thio)-Triphosphate (Rp), Mg, And Mn Length = 217

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 11  VTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLP 70
           V+I F+DI GFT++++  T  E+V  LN+L+  FD      +  +++ +GD Y  V GLP
Sbjct: 27  VSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLP 86
Query: 71  VRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGR 114
               DHA     M +D++       +R +    + +R+G+H+GR
Sbjct: 87  EARADHAHCCVEMGMDMIEAISL--VREMTGVNVNMRVGIHSGR 128

>pdb|1CS4|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase: Complex With 2'-Deoxy-Adenosine 3'- Monophosphate, Pyrophosphate And Mg Length = 225

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 11  VTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLP 70
           V+I F+DI GFT++++  T  E+V  LN+L+  FD      +  +++ +GD Y  V GLP
Sbjct: 35  VSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLP 94
Query: 71  VRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGR 114
               DHA     M +D++       +R +    + +R+G+H+GR
Sbjct: 95  EARADHAHCCVEMGMDMIEAISL--VREMTGVNVNMRVGIHSGR 136

>pdb|1AZS|A Chain A, Complex Of Gs-Alpha With The Catalytic Domains Of Mammalian Adenylyl Cyclase Length = 220

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 2/104 (1%)
Query: 11  VTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLP 70
           V+I F+DI GFT++++  T  E+V  LN+L+  FD      +  +++ +GD Y  V GLP
Sbjct: 35  VSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLP 94
Query: 71  VRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGR 114
               DHA     M +D++       +R +    + +R+G+H+GR
Sbjct: 95  EARADHAHCCVEMGMDMI--EAISLVREMTGVNVNMRVGIHSGR 136

>pdb|2W01|A Chain A, Crystal Structure Of The Guanylyl Cyclase Cya2 Length = 208

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 7   DFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVV 66
           D R +TI  SD+ GFT+ S    P EVV +LN  +      I  +     E +GD  +V+
Sbjct: 11  DRRPITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVL 70
Query: 67  GGLPVRIPDHADQIATMALD--LLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK 123
            G P    D A +     ++  L       ++  L   PL + IG++TG  V  ++  +
Sbjct: 71  FGAPTSQQDDALRAVACGVEMQLALREVNQQVTGLGLQPLEMGIGINTGEVVVGNIGSE 129

>pdb|3R5G|A Chain A, Crystal Structure Of The Adenylyl Cyclase Cyab From P. Aeruginosa Length = 198

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 9   REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG 68
           +++T++FSDI GFT +S       + DLLN+           Y     + +GD  MV  G
Sbjct: 8   KKLTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKFVGDCVMVFFG 67
Query: 69  LPVRIPDHADQIA--TMALDLLHHSG--RFKIRHLPYT-PLRLRIGLHTG 113
            P       D +A  +M + +  H    R + R    T PL +R+G++TG
Sbjct: 68  DPSTQGAKKDAVAAVSMGIAMRKHMKVLRQQWRAQGITKPLEIRMGINTG 117

>pdb|1WC0|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex With Alpha,Beta-Methylene-Atp Length = 219

Iteration: 1
 Score = 41.6 bits (96), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 9   REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATI--NAYNVYKVETIGDAYMVV 66
           R +TI FSDIVGFT +S       V +LLN+        +  N   V K   +GDA M +
Sbjct: 26  RLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKF--VGDAIMAL 83
Query: 67  GGLPVRIPDHAD---QIAT-----MALDLLHHSGRFK--IRHLPYTPLRLRIGLHTGRPV 116
            G P  +         IAT     +AL+ L+   + +  +      P+R R G+H G  V
Sbjct: 84  YGAPEEMSPSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAV 143

>pdb|1WC1|A Chain A, Soluble Adenylyl Cyclase Cyac From S. Platensis In Complex With Rp-atpalphas Length = 226

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 14/120 (11%)
Query: 9   REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATI--NAYNVYKVETIGDAYMVV 66
           R +TI FSDIVGFT +S       V +LLN+        +  N   V K   +GDA M +
Sbjct: 33  RLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKF--VGDAIMAL 90
Query: 67  GGLPVRIPDHAD---QIAT-----MALDLLHHSGRFK--IRHLPYTPLRLRIGLHTGRPV 116
            G P  +         IAT     +AL+ L+   + +  +      P+R R G+H G  V
Sbjct: 91  YGAPEEMSPSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAV 150

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	123
3uvj_A	225	Guanylate cyclase soluble subunit alpha-3; nitric	2e-65
1yk9_A	204	Adenylate cyclase; beta-alpha-beta sandwich, struc	6e-63
3et6_A	190	Soluble guanylyl cyclase beta; guanylate cyclase,	3e-59
2wz1_A	219	Guanylate cyclase soluble subunit beta-1; lyase, G	6e-59
1azs_A	220	VC1; complex (lyase/hydrolase), hydrolase, signal	7e-58
1ab8_A	220	Adenylyl cyclase; lyase, complex (transferase-inhi	5e-51
1fx2_A	235	Receptor-type adenylate cyclase gresag 4.1; CAMP,	3e-37
1y10_A	407	Hypothetical protein RV1264/MT1302; adenylyl cycla	9e-34
2w01_A	208	Adenylate cyclase; guanylyl cyclase, class III nuc	7e-24
3r5g_A	198	CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas	3e-21
1wc3_A	219	Adenylate cyclase; soluble adenylyl cyclase, CAMP	8e-21
1ybt_A	184	Hydrolase, alpha/beta hydrolase fold family; cycla	4e-17
3mr7_A	189	Adenylate/guanylate cyclase/hydrolase, alpha/beta	5e-16

>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens} Length = 225

 Score =  196 bits (501), Expect = 2e-65
 Identities = 55/115 (47%), Positives = 69/115 (60%), Gaps = 3/115 (2%)

Query: 2   PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
            V  + F  VT+ FSDIVGFT I +  +P +V+ +LN LYT FD      +VYKVETIGD
Sbjct: 6   VVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGD 65

Query: 62  AYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPV 116
           AY V GGL      HA QIA MAL ++  S      H    P+++RIGLH+G  V
Sbjct: 66  AYCVAGGLHKESDTHAVQIALMALKMMELSDEVMSPHGE--PIKMRIGLHSG-SV 117

>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis} Length = 204

 Score =  189 bits (483), Expect = 6e-63
 Identities = 42/115 (36%), Positives = 69/115 (60%), Gaps = 3/115 (2%)

Query: 2   PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
            +  + + E ++ F+DIVGFT  ++ + P ++V  L+ LY+ FD  ++ + + K+E  GD
Sbjct: 2   NIIADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGD 61

Query: 62  AYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPV 116
           +YMVV G+P   PDH   +A  ALD+ + + + K       P+ LR+GL TG PV
Sbjct: 62  SYMVVSGVPRPRPDHTQALADFALDMTNVAAQLKDPR--GNPVPLRVGLATG-PV 113

>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B Length = 190

 Score =  179 bits (457), Expect = 3e-59
 Identities = 52/115 (45%), Positives = 72/115 (62%), Gaps = 4/115 (3%)

Query: 3   VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY-NVYKVETIGD 61
              ++  E T+ FSDIVGFT I++ S+P EV  LL++LY  FDA I  Y  +YKVETIGD
Sbjct: 2   APAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGD 61

Query: 62  AYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPV 116
           AYMVV  + V   DHAD +   AL +   +   ++      P+R+R+G+H+G PV
Sbjct: 62  AYMVVCNVTVPCDDHADVLLEFALRMHEEA--SRVASSLGEPVRIRVGMHSG-PV 113

>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B Length = 219

 Score =  179 bits (457), Expect = 6e-59
 Identities = 48/122 (39%), Positives = 68/122 (55%), Gaps = 11/122 (9%)

Query: 2   PVDPEDFREVTIYFSDIVGFTTISAYSTP----FEVVDLLNDLYTCFDATINAYN---VY 54
           PV  + +  VTI FS IVGF    +         ++V+LLNDLYT FD   ++     VY
Sbjct: 4   PVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVY 63

Query: 55  KVETIGDAYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGR 114
           KVET+GD YM V GLP     HA  I  +ALD++  +G+ ++       +++ IG+HTG 
Sbjct: 64  KVETVGDKYMTVSGLPEPCIHHARSICHLALDMMEIAGQVQVDG---ESVQITIGIHTG- 119

Query: 115 PV 116
            V
Sbjct: 120 EV 121

>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A* Length = 220

 Score =  177 bits (451), Expect = 7e-58
 Identities = 34/113 (30%), Positives = 59/113 (52%), Gaps = 2/113 (1%)

Query: 2   PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
            +  +    V+I F+DI GFT++++  T  E+V  LN+L+  FD      +  +++ +GD
Sbjct: 26  KIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGD 85

Query: 62  AYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGR 114
            Y  V GLP    DHA     M +D++        R +    + +R+G+H+GR
Sbjct: 86  CYYCVSGLPEARADHAHCCVEMGMDMIEAISLV--REMTGVNVNMRVGIHSGR 136

>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B* Length = 220

 Score =  159 bits (405), Expect = 5e-51
 Identities = 29/134 (21%), Positives = 47/134 (35%), Gaps = 21/134 (15%)

Query: 1   MPVDPEDFREVTIYFSDIVGFTTISA----YSTPFEVVDLLNDLYTCFDATI---NAYNV 53
             +  + +  V + F+ I  F              E + LLN++   FD  +       V
Sbjct: 5   EELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGV 64

Query: 54  YKVETIGDAYMVVGGLPVR-----------IPDHADQIATMALDLLHHSGRFKIRHLPYT 102
            K++TIG  YM   GL                 H   +   A  L+       I    + 
Sbjct: 65  EKIKTIGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKL--DAINKHSFN 122

Query: 103 PLRLRIGLHTGRPV 116
             +LR+G++ G PV
Sbjct: 123 DFKLRVGINHG-PV 135

>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A Length = 235

 Score =  125 bits (315), Expect = 3e-37
 Identities = 30/141 (21%), Positives = 52/141 (36%), Gaps = 28/141 (19%)

Query: 3   VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDA 62
              E    VT+ F+DI   T + A + P  + D +   +    + I  Y  Y+V+T+GD+
Sbjct: 5   APKEPTDPVTLIFTDIESSTALWA-AHPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDS 63

Query: 63  YMVVGGLPVRIPDHADQIATMALD-------LLHHSGRFKIRHLP--------------- 100
           +M+    P      A ++    L        L      F+ +                  
Sbjct: 64  FMIASKSPFAAVQLAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTPPTAHMDPE 123

Query: 101 -----YTPLRLRIGLHTGRPV 116
                +  LR+R+G+HTG   
Sbjct: 124 VYSRLWNGLRVRVGIHTGLCD 144

>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A* Length = 407

 Score =  120 bits (301), Expect = 9e-34
 Identities = 32/116 (27%), Positives = 48/116 (41%), Gaps = 14/116 (12%)

Query: 2   PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGD 61
                  R+VT+ F+D+VGFT +    +  E+  L   L       + A  V+ ++TIGD
Sbjct: 207 GKPLPGARQVTVAFADLVGFTQLGEVVSAEELGHLAGRLAGLARD-LTAPPVWFIKTIGD 265

Query: 62  AYMVVGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVS 117
           A M+V   P  + D         L L+                RLR G+ +G  VS
Sbjct: 266 AVMLVCPDPAPLLDT-------VLKLVEVVDTDN------NFPRLRAGVASGMAVS 308

>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP} Length = 208

 Score = 89.9 bits (224), Expect = 7e-24
 Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 16/114 (14%)

Query: 9   REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTC-------FDATINAYNVYKVETIGD 61
           R +TI  SD+ GFT+ S    P EVV +LN  +            TI+ +       +GD
Sbjct: 13  RPITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEF-------MGD 65

Query: 62  AYMVVGGLPVRIPDHADQIATMALDLLHHSGRF--KIRHLPYTPLRLRIGLHTG 113
             +V+ G P    D A +     +++         ++  L   PL + IG++TG
Sbjct: 66  GILVLFGAPTSQQDDALRAVACGVEMQLALREVNQQVTGLGLQPLEMGIGINTG 119

>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} Length = 198

 Score = 83.0 bits (206), Expect = 3e-21
 Identities = 29/118 (24%), Positives = 53/118 (44%), Gaps = 21/118 (17%)

Query: 9   REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTC-------FDATINAYNVYKVETIGD 61
           +++T++FSDI GFT +S       + DLLN+           +  TI+ +       +GD
Sbjct: 8   KKLTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKF-------VGD 60

Query: 62  AYMVVGGLPV--RIPDHADQIATMALD----LLHHSGRFKIRHLPYTPLRLRIGLHTG 113
             MV  G P        A    +M +     +     +++ + +   PL +R+G++TG
Sbjct: 61  CVMVFFGDPSTQGAKKDAVAAVSMGIAMRKHMKVLRQQWRAQGIT-KPLEIRMGINTG 117

>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A* Length = 219

 Score = 82.2 bits (204), Expect = 8e-21
 Identities = 32/122 (26%), Positives = 48/122 (39%), Gaps = 24/122 (19%)

Query: 9   REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTC-------FDATINAYNVYKVETIGD 61
           R +TI FSDIVGFT +S       V +LLN+              T++ +       +GD
Sbjct: 26  RLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKF-------VGD 78

Query: 62  AYMVVGGLPVRI--PDHADQIATMALDLL--------HHSGRFKIRHLPYTPLRLRIGLH 111
           A M + G P  +   +   +    A  +L            R  +      P+R R G+H
Sbjct: 79  AIMALYGAPEEMSPSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIH 138

Query: 112 TG 113
            G
Sbjct: 139 QG 140

>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A* Length = 184

 Score = 71.9 bits (177), Expect = 4e-17
 Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 15/105 (14%)

Query: 9   REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG 68
              TI F+DIVG T  +A        DLL++  T     I  +   +V T GD ++    
Sbjct: 16  MLATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFT 75

Query: 69  LPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTG 113
            P      A      A D++               + +RIG+H G
Sbjct: 76  SPSA----A---IACADDIVDAVAAL--------GIEVRIGIHAG 105

>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi} Length = 189

 Score = 69.2 bits (170), Expect = 5e-16
 Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 7/108 (6%)

Query: 9   REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG 68
           R   I  +D+ G++ +   +    +           D  I       V+T GD  +    
Sbjct: 6   RLCAILAADMAGYSRLMERNETDVLNRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFD 65

Query: 69  LPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPV 116
                   A      AL++     + +        ++ RIG++ G  V
Sbjct: 66  TAQA----A---LRCALEIQQAMQQREEDTPRKERIQYRIGINIGDIV 106

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	123
3uvj_A	225	Guanylate cyclase soluble subunit alpha-3; nitric	100.0
1azs_A	220	VC1; complex (lyase/hydrolase), hydrolase, signal	100.0
3et6_A	190	Soluble guanylyl cyclase beta; guanylate cyclase,	100.0
2wz1_A	219	Guanylate cyclase soluble subunit beta-1; lyase, G	100.0
2w01_A	208	Adenylate cyclase; guanylyl cyclase, class III nuc	100.0
1ab8_A	220	Adenylyl cyclase; lyase, complex (transferase-inhi	100.0
3r5g_A	198	CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas	99.98
1yk9_A	204	Adenylate cyclase; beta-alpha-beta sandwich, struc	99.98
1wc3_A	219	Adenylate cyclase; soluble adenylyl cyclase, CAMP	99.97
1ybt_A	184	Hydrolase, alpha/beta hydrolase fold family; cycla	99.96
3mr7_A	189	Adenylate/guanylate cyclase/hydrolase, alpha/beta	99.95
1fx2_A	235	Receptor-type adenylate cyclase gresag 4.1; CAMP,	99.95
1y10_A	407	Hypothetical protein RV1264/MT1302; adenylyl cycla	99.92
2qv6_A	268	MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY	97.56
3i5c_A	206	Fusion of general control protein GCN4 and WSPR R	97.41
3hva_A	177	Protein FIMX; ggdef diguanylate cyclase, biofilm,	97.33
3mtk_A	178	Diguanylate cyclase/phosphodiesterase; structural	97.26
3tvk_A	179	DGC, diguanylate cyclase YDEH; putative zinc senso	97.24
3icl_A	171	EAL/ggdef domain protein; structural genomics, PSI	97.21
3ign_A	177	Diguanylate cyclase; ggdef domain, A1U3W3_marav, N	97.08
3pjx_A	430	Cyclic dimeric GMP binding protein; ggdef-EAL tand	97.08
3hvw_A	176	Diguanylate-cyclase (DGC); alpha-beta protein., st	96.97
3qyy_A	167	Response regulator; C-DI-GMP, DGC, ggdef, competit	96.85
3ezu_A	342	Ggdef domain protein; multidomain protein of unkno	96.83
3bre_A	358	Probable two-component response regulator; protein	96.33
1w25_A	459	Stalked-cell differentiation controlling protein;	95.89
3hvb_A	437	Protein FIMX; EAL phosphodiesterase, biofilm, C-DI	92.47
3ung_C	693	CMR2DHD; ferredoxin fold, nucleotide-binding, poly	91.56
2qv6_A	268	MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY	89.75

>3uvj_A Guanylate cyclase soluble subunit alpha-3; nitric oxide, structural genomics, structural genomics conso SGC, CGMP biosynthesis; 2.08A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=193.28  Aligned_cols=120  Identities=46%  Similarity=0.717  Sum_probs=111.8

Q ss_pred             CCCCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHH
Q psy13822          2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIA   81 (123)
Q Consensus         2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~   81 (123)
                      +..+++++++||||+||+|||.+++.++|+++..+||+++..+++++.+|+|+++|++||++|++||.|....+|+.+|+
T Consensus         6 ~~~~~~~~~vtvlF~Di~gfT~l~~~~~~~~~~~~ln~~~~~~~~~i~~~~g~v~k~~GD~~ma~fg~p~~~~~~a~~a~   85 (225)
T 3uvj_A            6 VVQAKKFSNVTMLFSDIVGFTAICSQCSPLQVITMLNALYTRFDQQCGELDVYKVETIGDAYCVAGGLHKESDTHAVQIA   85 (225)
T ss_dssp             EEEEEEEEEEEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCEEECCSTTCEEEEESSSSCCTTHHHHHH
T ss_pred             ccCCcccceEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHhcCeEEEEeeCcEEEEEECCCCCchHHHHHHH
Confidence            34577899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822         82 TMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK  123 (123)
Q Consensus        82 ~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~  123 (123)
                      .+|++|++.+..++...  ..++++|||||+|+|++|++|++
T Consensus        86 ~~al~~~~~~~~~~~~~--~~~l~~riGih~G~v~~G~iG~~  125 (225)
T 3uvj_A           86 LMALKMMELSDEVMSPH--GEPIKMRIGLHSGSVFAGVVGVK  125 (225)
T ss_dssp             HHHHHHHHHHTTSBCTT--SCBCCEEEEEEEEEEEEEEECC-
T ss_pred             HHHHHHHHHHHHHHhhc--CCceEEEEEEEeccEEEEEecCC
Confidence            99999999998876543  46899999999999999999974

>1azs_A VC1; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Canis lupus familiaris} SCOP: d.58.29.1 PDB: 1cs4_A* 1u0h_A* 2gvd_A* 2gvz_A* 3c14_A* 3c15_A* 3c16_A* 3e8a_A* 3g82_A* 3maa_A* 1cul_A* 1cjk_A* 1cju_A* 1cjv_A* 1cjt_A* 1tl7_A*

Probab=100.00  E-value=2.7e-33  Score=190.95  Aligned_cols=120  Identities=28%  Similarity=0.492  Sum_probs=111.8

Q ss_pred             CCCCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHH
Q psy13822          2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIA   81 (123)
Q Consensus         2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~   81 (123)
                      ++..++++++||||+||+|||.+++.++|+++..+||+++..+++++.+|||+++|++||++|++||.|...++++.+|+
T Consensus        26 ~l~~~~~~~vtvlF~DI~gfT~l~e~~~~~~~~~~Ln~~~~~~~~~i~~~gG~v~k~iGD~~ma~fg~p~~~~~~a~~Av  105 (220)
T 1azs_A           26 KIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCV  105 (220)
T ss_dssp             CCEEEEEEEEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEEEEESCSSCCSTHHHHHH
T ss_pred             cccccccccEEEEEEEccChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCcEEEEEeCCeEEEEECCCCCChHHHHHHH
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822         82 TMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK  123 (123)
Q Consensus        82 ~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~  123 (123)
                      ++|++|++.+..++...  +.++++|||||+|+|++|++|++
T Consensus       106 ~~Al~m~~~l~~~~~~~--~~~l~irIGI~tG~v~~G~vG~~  145 (220)
T 1azs_A          106 EMGMDMIEAISLVREMT--GVNVNMRVGIHSGRVHCGVLGLR  145 (220)
T ss_dssp             HHHHHHHHHHHHHHHHH--CSCCEEEEEEEEEEEEEEECSSS
T ss_pred             HHHHHHHHHHHHHHhhc--CCCcEEEEEEEEeEEEEEEeCCC
Confidence            99999999999887642  45899999999999999999964

>3et6_A Soluble guanylyl cyclase beta; guanylate cyclase, dimethylarsenic, lyase, membrane, transmembrane; 2.55A {Chlamydomonas reinhardtii} PDB: 3et6_B

Probab=100.00  E-value=1.7e-32  Score=182.92  Aligned_cols=120  Identities=44%  Similarity=0.734  Sum_probs=109.8

Q ss_pred             CCCCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhc-CeEEEeeeCcEEEEEeCCCCCCchHHHHH
Q psy13822          2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY-NVYKVETIGDAYMVVGGLPVRIPDHADQI   80 (123)
Q Consensus         2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~-gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a   80 (123)
                      +.++++++++|+||+||+|||.+++.++|+++..+||+++..+++++.+| |++++|+.||++|++||.|....+|+.+|
T Consensus         1 ~~~~~e~~~vtvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~g~~~vk~~GD~~~a~fg~~~~~~~~~~~a   80 (190)
T 3et6_A            1 SAPAQEHPEATVLFSDIVGFTEIASRSSPLEVXSLLDELYQRFDAAIEEYPQLYKVETIGDAYMVVCNVTVPCDDHADVL   80 (190)
T ss_dssp             CCCCEEEEEEEEEEEEETTHHHHTTTSCHHHHHHHHHHHHHHHHHHGGGCTTEEEEECTTSCEEEEESSSSCCSTHHHHH
T ss_pred             CCCccccceEEEEEeEecChhHhHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeCCEEEEEECCCCCchhHHHHH
Confidence            45788999999999999999999999999999999999999999999999 77888999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822         81 ATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK  123 (123)
Q Consensus        81 ~~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~  123 (123)
                      +++|++|++.+.+++..  ...++++|||||+|+|++|++|++
T Consensus        81 ~~~al~~~~~~~~~~~~--~~~~l~~riGi~~G~v~~g~vG~~  121 (190)
T 3et6_A           81 LEFALRMHEEASRVASS--LGEPVRIRVGMHSGPVVAGVVGRK  121 (190)
T ss_dssp             HHHHHHHHHHHHTSCCC-----CCCEEEEEEEEEEEEEEECSS
T ss_pred             HHHHHHHHHHHHHHHhc--cCCCceEEEEEEeccEEEEecCCC
Confidence            99999999999876543  345799999999999999999964

>2wz1_A Guanylate cyclase soluble subunit beta-1; lyase, GUCY1, metal-binding, CGMP biosynthesis, nucleotide-B cyclase, GUCY1B3, GTP-binding; 1.63A {Homo sapiens} PDB: 3uvj_B

Probab=100.00  E-value=7.4e-33  Score=188.67  Aligned_cols=119  Identities=40%  Similarity=0.707  Sum_probs=111.2

Q ss_pred             CCCCCceeeEEEEEeeccChhhhccCCC----HHHHHHHHHHHHHHHHHHHh---hcCeEEEeeeCcEEEEEeCCCCCCc
Q psy13822          2 PVDPEDFREVTIYFSDIVGFTTISAYST----PFEVVDLLNDLYTCFDATIN---AYNVYKVETIGDAYMVVGGLPVRIP   74 (123)
Q Consensus         2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~----~~~~~~~l~~~~~~~~~~v~---~~gg~~~~~~Gd~~~~~fg~~~~~~   74 (123)
                      +..+++++++||||+||+|||.+++.++    |+++..+||+++..+++++.   .|+|+++|++||++|++||.|...+
T Consensus         4 ~~~~~~~~~vtvlF~DI~gfT~l~e~~~~~~~~~~~~~~Ln~~~~~~~~~i~~~~~~~g~~~k~~GD~~ma~fg~p~~~~   83 (219)
T 2wz1_A            4 PVPAKRYDNVTILFSGIVGFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKYMTVSGLPEPCI   83 (219)
T ss_dssp             -CCCEEEEEEEEEEEEETTHHHHHHHSCCC--HHHHHHHHHHHHHHHHHHHCTTTCTTCEEECCCTTCEEEEESSSSCCT
T ss_pred             ccCccceeeEEEEEEEccCcHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCEEEEeecCCEEEEEECCCCCCh
Confidence            5678999999999999999999999999    99999999999999999999   8899999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822         75 DHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK  123 (123)
Q Consensus        75 ~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~  123 (123)
                      +|+.+|++||++|++.+..++..   ..++++|||||+|+|++|++|++
T Consensus        84 ~~a~~A~~~Al~~~~~~~~~~~~---~~~l~~rIGi~~G~v~~G~iG~~  129 (219)
T 2wz1_A           84 HHARSICHLALDMMEIAGQVQVD---GESVQITIGIHTGEVVTGVIGQR  129 (219)
T ss_dssp             THHHHHHHHHHHHHHHHTTCEET---TEECCEEEEEEEEEEEEEEECSS
T ss_pred             hHHHHHHHHHHHHHHHHHHHhcc---CCceEEEEEEEEEEEEEEEeCCC
Confidence            99999999999999999987642   56899999999999999999974

>2w01_A Adenylate cyclase; guanylyl cyclase, class III nucleotidyl cyclase, lyase; 2.31A {Synechocystis SP}

Probab=100.00  E-value=4.6e-32  Score=183.35  Aligned_cols=118  Identities=28%  Similarity=0.345  Sum_probs=110.1

Q ss_pred             CCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHH
Q psy13822          5 PEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMA   84 (123)
Q Consensus         5 ~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~a   84 (123)
                      ..+++++|+||+||+|||.+++.++|+++..+||+++..+.+++.+|+|+++|++||++|++||.|...++|+.+|++||
T Consensus         9 ~~e~~~vtvlf~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~a~fg~p~~~~~~a~~Av~~A   88 (208)
T 2w01_A            9 GGDRRPITILTSDLRGFTSTSEGLNPEEVVKVLNIYFGKMADVITHHGGTIDEFMGDGILVLFGAPTSQQDDALRAVACG   88 (208)
T ss_dssp             CCEEEEEEEEEEECTTHHHHGGGSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCTTHHHHHHHHH
T ss_pred             CCeEEEEEEEEEEecChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEcCEEEEEECCCCCChhHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhc--CCCCCceeEEEeeecCceeEEeecC
Q psy13822         85 LDLLHHSGRFKIR--HLPYTPLRLRIGLHTGRPVSKHLRK  122 (123)
Q Consensus        85 l~~~~~~~~~~~~--~~~~~~l~~rIGi~~G~v~~g~iG~  122 (123)
                      ++|++.+..++..  .....++++|||||+|+|++|++|+
T Consensus        89 l~~~~~l~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~  128 (208)
T 2w01_A           89 VEMQLALREVNQQVTGLGLQPLEMGIGINTGEVVVGNIGS  128 (208)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCCCCEEEEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhhcCCCceEEEEEEEeeEEEEEEeCC
Confidence            9999999887652  2234579999999999999999996

>1ab8_A Adenylyl cyclase; lyase, complex (transferase-inhibitor); HET: FOK; 2.20A {Rattus norvegicus} SCOP: d.58.29.1 PDB: 1azs_B* 1cjk_B* 1cjt_B* 1cju_B* 1cjv_B* 1cs4_B* 1tl7_B* 1u0h_B* 2gvd_B* 2gvz_B* 3c14_B* 3c15_B* 3c16_B* 3e8a_B* 3g82_B* 3maa_B* 1cul_B*

Probab=100.00  E-value=5.2e-32  Score=184.55  Aligned_cols=120  Identities=23%  Similarity=0.418  Sum_probs=108.0

Q ss_pred             CCCCCceeeEEEEEeeccChhhhccCCC----HHHHHHHHHHHHHHHHHHHhhc---CeEEEeeeCcEEEEEeCCCC---
Q psy13822          2 PVDPEDFREVTIYFSDIVGFTTISAYST----PFEVVDLLNDLYTCFDATINAY---NVYKVETIGDAYMVVGGLPV---   71 (123)
Q Consensus         2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~----~~~~~~~l~~~~~~~~~~v~~~---gg~~~~~~Gd~~~~~fg~~~---   71 (123)
                      ++.+++++++||||+||+|||.+++.++    |+++..+||+++..+++++.+|   ||+++|++||++|++||.|.   
T Consensus         6 ~~~~~~~~~vtvlF~DI~gfT~l~~~l~~~~~p~~~~~~Ln~~~~~~~~~i~~~~~~g~~~ik~iGD~~ma~fg~p~~~~   85 (220)
T 1ab8_A            6 ELYHQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPS   85 (220)
T ss_dssp             -CCEEEEEEEEEEEEECTTHHHHCCCSTTTTTTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEEEEECCCCSCC
T ss_pred             cccccccCcEEEEEEEccchHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHHhhccCCeEEEEEeCceEEEEECCCcccc
Confidence            3567889999999999999999999875    7899999999999999999987   88999999999999999987   


Q ss_pred             --------CCchHHHHHHHHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822         72 --------RIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK  123 (123)
Q Consensus        72 --------~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~  123 (123)
                              ...+|+.+|+++|++|++.+..++..  ...++++|||||+|+|++|++|++
T Consensus        86 ~~~~~~~~~~~~~a~~a~~~Al~~~~~l~~~~~~--~~~~l~~rIGIh~G~v~~G~iG~~  143 (220)
T 1ab8_A           86 QEHAQEPERQYMHIGTMVEFAYALVGKLDAINKH--SFNDFKLRVGINHGPVIAGVIGAQ  143 (220)
T ss_dssp             C--------CCHHHHHHHHHHHHHHHHHHHHHTT--TTCCCCCEEEEEEEEEEEEEECSS
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHHHHHHhhc--cCCceEEEEEEEeeeEEEEeecCC
Confidence                    35789999999999999999988754  356899999999999999999964

>3r5g_A CYAB; adenylyl cyclase, lyase; 1.50A {Pseudomonas aeruginosa} SCOP: d.58.29.0

Probab=99.98  E-value=7.7e-32  Score=180.72  Aligned_cols=119  Identities=24%  Similarity=0.342  Sum_probs=108.6

Q ss_pred             CCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCC--chHHHHHHH
Q psy13822          5 PEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRI--PDHADQIAT   82 (123)
Q Consensus         5 ~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~--~~~~~~a~~   82 (123)
                      ..+++++|+||+||+|||.+++.++|+++..+|++++..+.+++++|||+++|+.||++|++||.|...  .+++.+|++
T Consensus         4 ~~e~~~vtvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~a~fg~p~~~~~~~~a~~a~~   83 (198)
T 3r5g_A            4 ETQRKKLTVFFSDIRGFTELSEELEAEALTDLLNNYLNEMSKIALKYGGTIDKFVGDCVMVFFGDPSTQGAKKDAVAAVS   83 (198)
T ss_dssp             CCEEEEEEEEEEEEETHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEETTEEEEEESSSSCSCHHHHHHHHHH
T ss_pred             CceEEEEEEEEEEccccchhhhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeeeCCEEEEEECCCcccccHHHHHHHHH
Confidence            568999999999999999999999999999999999999999999999999999999999999999876  689999999


Q ss_pred             HHHHHHHHhhhhhhcCC---CCCceeEEEeeecCceeEEeecCC
Q psy13822         83 MALDLLHHSGRFKIRHL---PYTPLRLRIGLHTGRPVSKHLRKK  123 (123)
Q Consensus        83 ~al~~~~~~~~~~~~~~---~~~~l~~rIGi~~G~v~~g~iG~~  123 (123)
                      +|++|++.+..++....   ...++++|||||+|++++|++|++
T Consensus        84 ~al~i~~~~~~~~~~~~~~~~~~~l~~riGi~~G~v~~g~vG~~  127 (198)
T 3r5g_A           84 MGIAMRKHMKVLRQQWRAQGITKPLEIRMGINTGYCTVGNFGAD  127 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCSCCEEEEEEEEEEEEEEEEEET
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEEEEEEEEeCCC
Confidence            99999999988765321   235799999999999999999963

>1yk9_A Adenylate cyclase; beta-alpha-beta sandwich, structural genomics, PSI, protein structure initiative; 2.70A {Mycobacterium tuberculosis}

Probab=99.98  E-value=1.9e-33  Score=189.77  Aligned_cols=119  Identities=34%  Similarity=0.631  Sum_probs=109.7

Q ss_pred             CCCCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHH
Q psy13822          2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIA   81 (123)
Q Consensus         2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~   81 (123)
                      +..+++++++|+||+||+|||.+++.++|+++..+||+|+..+++++.+|||+++|++||++|++||.|...++|+.+|+
T Consensus         2 ~~~~~~~~~vtvlf~DI~gfT~l~~~~~~~~~~~~ln~~~~~~~~~i~~~gG~v~k~~GD~~ma~fg~p~~~~~~a~~A~   81 (204)
T 1yk9_A            2 NIIADKYDEASVLFADIVGFTERASSTAPADLVRFLDRLYSAFDELVDQHGLEKIEVSGDSYMVVSGVPRPRPDHTQALA   81 (204)
T ss_dssp             ----CCCSCEEEEEEEESCSSCSSCCCCSSSTTTHHHHHHTTTTGGGTTSSCEECCCSSSCEEEESCCSSCCTTHHHHHH
T ss_pred             CCCccccCcEEEEEEEccChHHHHhcCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCeEEEEECCCCCChHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecC
Q psy13822         82 TMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRK  122 (123)
Q Consensus        82 ~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~  122 (123)
                      ++|++|++.+..++..  ...++++|||||+|+|++|++|+
T Consensus        82 ~~Al~~~~~~~~~~~~--~~~~l~~rIGI~tG~v~~g~vG~  120 (204)
T 1yk9_A           82 DFALDMTNVAAQLKDP--RGNPVPLRVGLATGPVVAGVVGS  120 (204)
T ss_dssp             THHHHHHHHTTTCCSS--SCCCCCEEEEEEEECEEECCCCS
T ss_pred             HHHHHHHHHHHHHHhc--cCCCceEEEEEEeeEEEEEEecC
Confidence            9999999999988654  35689999999999999999996

>1wc3_A Adenylate cyclase; soluble adenylyl cyclase, CAMP signaling, lyase; HET: APC; 1.9A {Spirulina platensis} SCOP: d.58.29.1 PDB: 1wc0_A* 1wc4_A* 1wc5_A* 2bw7_A* 1wc1_A* 1wc6_A*

Probab=99.97  E-value=3.2e-31  Score=180.51  Aligned_cols=119  Identities=26%  Similarity=0.348  Sum_probs=107.8

Q ss_pred             CCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCC--chHHHHHH
Q psy13822          4 DPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRI--PDHADQIA   81 (123)
Q Consensus         4 ~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~--~~~~~~a~   81 (123)
                      ...+++++|+||+||+|||.+++.++|+++..+||+|+..+.+++.+|+|++.|++||++|++||.|...  .+++.+|+
T Consensus        21 l~~e~~~vtvlF~DI~gfT~l~~~~~~~~~~~~Ln~~~~~~~~~i~~~gG~v~k~iGD~~ma~fg~p~~~~~~~~a~~Av  100 (219)
T 1wc3_A           21 MRPEPRLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAPEEMSPSEQVRRAI  100 (219)
T ss_dssp             CCCEEEEEEEEEEEEESHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCCHHHHHHHHH
T ss_pred             cCCceeEEEEEEEEecChHHHHhhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEEcCeEEEEECCCCCCCChHHHHHHH
Confidence            3568899999999999999999999999999999999999999999999999999999999999998753  47899999


Q ss_pred             HHHHHHHHHhhhhhhcC--------CCCCceeEEEeeecCceeEEeecC
Q psy13822         82 TMALDLLHHSGRFKIRH--------LPYTPLRLRIGLHTGRPVSKHLRK  122 (123)
Q Consensus        82 ~~al~~~~~~~~~~~~~--------~~~~~l~~rIGi~~G~v~~g~iG~  122 (123)
                      +||++|++.+..++...        ....++++|||||+|+|++|++|+
T Consensus       101 ~~Al~~~~~l~~~~~~~~~~~~~~~~~~~~l~~rIGIh~G~v~~G~vG~  149 (219)
T 1wc3_A          101 ATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAVVGLFGS  149 (219)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSSSSTTCCCCEEEEEEEEEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccccCCCccEEEEEEEeceEEEEEcCC
Confidence            99999999998876421        234689999999999999999996

>1ybt_A Hydrolase, alpha/beta hydrolase fold family; cyclase homology domain, CHD, RV1900C; 2.31A {Mycobacterium tuberculosis} PDB: 1ybu_A*

Probab=99.96  E-value=3.8e-29  Score=166.28  Aligned_cols=105  Identities=25%  Similarity=0.293  Sum_probs=95.6

Q ss_pred             CCCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHH
Q psy13822          3 VDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIAT   82 (123)
Q Consensus         3 ~~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~   82 (123)
                      .++.+++++||||+||+|||.+++.++|+++..+||+++..+++++.+|||+++|+.||++|++||.|       .+|++
T Consensus        10 ~~~~~~~~~tvlf~Di~gft~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gG~v~k~~GD~~ma~f~~p-------~~A~~   82 (184)
T 1ybt_A           10 HGSAERMLATIMFTDIVGSTQHAAALGDDRWRDLLDNHDTIVCHEIQRFGGREVNTAGDGFVATFTSP-------SAAIA   82 (184)
T ss_dssp             ---CEEEEEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCSSSSEEEEESCH-------HHHHH
T ss_pred             CCCCceEEEEEEEEECcCcHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCEEEeEeCCEEEEEeCCH-------HHHHH
Confidence            45778999999999999999999999999999999999999999999999999999999999999765       47999


Q ss_pred             HHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecC
Q psy13822         83 MALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRK  122 (123)
Q Consensus        83 ~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~  122 (123)
                      +|++|++.+..+        ++++|||||+|++++|.+|.
T Consensus        83 ~Al~~~~~l~~~--------~l~~riGi~~G~v~~g~ig~  114 (184)
T 1ybt_A           83 CADDIVDAVAAL--------GIEVRIGIHAGEVEVRDASH  114 (184)
T ss_dssp             HHHHHHHHHHTT--------TCCEEEEEEEEEEEEEECSS
T ss_pred             HHHHHHHHHHhc--------CCcEEEEEEEeEEEEEecCC
Confidence            999999988865        38999999999999998775

>3mr7_A Adenylate/guanylate cyclase/hydrolase, alpha/beta family; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.60A {Ruegeria pomeroyi}

Probab=99.95  E-value=1.7e-27  Score=158.65  Aligned_cols=107  Identities=17%  Similarity=0.164  Sum_probs=95.0

Q ss_pred             CCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHH-HHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHH
Q psy13822          4 DPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTC-FDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIAT   82 (123)
Q Consensus         4 ~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~-~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~   82 (123)
                      .+.|++++|+||+||+|||.+++.++++.+ ..|++++.. +++++.+|||+++|+.||++|++||.       +.+|++
T Consensus         1 s~~e~r~vtvlf~Di~gft~l~~~~~~~~~-~~l~~~~~~~~~~~i~~~~G~v~k~~GD~~~a~f~~-------~~~A~~   72 (189)
T 3mr7_A            1 SNAERRLCAILAADMAGYSRLMERNETDVL-NRQKLYRRELIDPAIAQAGGQIVKTTGDGMLARFDT-------AQAALR   72 (189)
T ss_dssp             -CCEEEEEEEEEEEECCCCGGGCCCCHHHH-HHHHHHHHHTHHHHHHHTTCEEEEEETTEEEEEESS-------HHHHHH
T ss_pred             CCCcEEEEEEEEEEchhhHHHHhhCCHHHH-HHHHHHHHHHHHHHHHHcCCEEEEEeCCEEEEEeCC-------HHHHHH
Confidence            367899999999999999999999998776 667777776 99999999999999999999999973       589999


Q ss_pred             HHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEE
Q psy13822         83 MALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSK  118 (123)
Q Consensus        83 ~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g  118 (123)
                      ||++|++.+..++.......++++|||||+|+|++|
T Consensus        73 ~Al~i~~~l~~~~~~~~~~~~l~~riGi~~G~v~~g  108 (189)
T 3mr7_A           73 CALEIQQAMQQREEDTPRKERIQYRIGINIGDIVLE  108 (189)
T ss_dssp             HHHHHHHHHHHHTTTSCGGGCCCEEEEEEEEEEEEC
T ss_pred             HHHHHHHHHHHHhhhcccCCceeEEEEEEEEEEEEE
Confidence            999999999998765544568999999999999997

>1fx2_A Receptor-type adenylate cyclase gresag 4.1; CAMP, trypanosomes, adenylyl cyclases, monomer-dimer, catalysis, lyase; 1.46A {Trypanosoma brucei} SCOP: d.58.29.1 PDB: 1fx4_A

Probab=99.95  E-value=1.7e-27  Score=163.38  Aligned_cols=113  Identities=26%  Similarity=0.321  Sum_probs=97.3

Q ss_pred             CCCCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHH
Q psy13822          2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIA   81 (123)
Q Consensus         2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~   81 (123)
                      ..++++++++||||+||+|||.+++.+ |+++..+|++++..+++++.+|||+++|++||++|++||.|       .+|+
T Consensus         4 ~~~~~~~~~vtvlF~DI~gfT~l~~~~-~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~ma~fg~p-------~~A~   75 (235)
T 1fx2_A            4 RAPKEPTDPVTLIFTDIESSTALWAAH-PDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKSP-------FAAV   75 (235)
T ss_dssp             GSCCCTTSCEEEEEEEETTHHHHHHHC-TTTHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCH-------HHHH
T ss_pred             cCCCCCCCcEEEEEEeccChHHHHHHC-HHHHHHHHHHHHHHHHHHHHHcCCEEEEEcCCeEEEEeCCH-------HHHH
Confidence            356788999999999999999999986 88999999999999999999999999999999999999875       4589


Q ss_pred             HHHHHHHHHhhhhhhcC---------------------C-------------CCCceeEEEeeecCceeEEeecC
Q psy13822         82 TMALDLLHHSGRFKIRH---------------------L-------------PYTPLRLRIGLHTGRPVSKHLRK  122 (123)
Q Consensus        82 ~~al~~~~~~~~~~~~~---------------------~-------------~~~~l~~rIGi~~G~v~~g~iG~  122 (123)
                      ++|++|++.+...+...                     .             ...++++|||||+|+|++|++|.
T Consensus        76 ~~Al~i~~~l~~~~w~~~~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~l~~riGIh~G~v~~G~~G~  150 (235)
T 1fx2_A           76 QLAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTPPTAHMDPEVYSRLWNGLRVRVGIHTGLCDIRHDEV  150 (235)
T ss_dssp             HHHHHHHHHHHHSCCSCSHHHHHHHHHHHHHHHHCSSCCCSSTTSCHHHHHHHCCSCCEEEEEEEECCEEEECTT
T ss_pred             HHHHHHHHHHHhCCCchhHhhhhhhhhhhhccccccccCccccccccccccccccCcEEEEEEEeeEEEEEeccc
Confidence            99999998875432110                     0             12469999999999999999986

>1y10_A Hypothetical protein RV1264/MT1302; adenylyl cyclase fold, lyase; HET: 1PE; 2.30A {Mycobacterium tuberculosis} PDB: 1y11_A*

Probab=99.92  E-value=3.6e-25  Score=162.07  Aligned_cols=101  Identities=30%  Similarity=0.352  Sum_probs=90.3

Q ss_pred             CCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHH
Q psy13822          5 PEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMA   84 (123)
Q Consensus         5 ~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~a   84 (123)
                      .++++++||||+||+|||.+++.++|+++..+||+|+..++.++. |+|+++|++||++|++||.|.       .|+++|
T Consensus       210 ~~~~~~vTVlFaDIvgFT~ls~~~~p~evv~lLn~~~~~~~~i~~-~~g~~iKtiGDa~mavfg~p~-------~a~~~A  281 (407)
T 1y10_A          210 LPGARQVTVAFADLVGFTQLGEVVSAEELGHLAGRLAGLARDLTA-PPVWFIKTIGDAVMLVCPDPA-------PLLDTV  281 (407)
T ss_dssp             CTTCEEEEEEEEEECSBCTTSCBCCHHHHHHHHHHHHHHHHHHCC-TTCEEEEEETTEEEEEESSHH-------HHHHHH
T ss_pred             ccceeeEEEEEEEccCchHHHhhCCHHHHHHHHHHHHHHHHHHHH-cCcEEEEEecceEEEEECCHH-------HHHHHH
Confidence            457899999999999999999999999999999999997777665 899999999999999998763       589999


Q ss_pred             HHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEe
Q psy13822         85 LDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKH  119 (123)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~  119 (123)
                      ++|++.+...      +.++++|||||+|+|++|+
T Consensus       282 l~m~~~l~~~------~~~l~iRIGIhtG~Vv~Gv  310 (407)
T 1y10_A          282 LKLVEVVDTD------NNFPRLRAGVASGMAVSRA  310 (407)
T ss_dssp             HHHHHHHHTC------TTSCCEEEEEEEEEEEEET
T ss_pred             HHHHHHHHHh------CCCceEEEEEEEEEEEEec
Confidence            9999988763      2467999999999999984

>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}

Probab=97.56  E-value=0.0011  Score=45.95  Aligned_cols=61  Identities=18%  Similarity=0.157  Sum_probs=54.9

Q ss_pred             ceeeEEEEEeeccChhh-hccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEe
Q psy13822          7 DFREVTIYFSDIVGFTT-ISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG   67 (123)
Q Consensus         7 ~~~~~tvlf~di~~~t~-l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~f   67 (123)
                      +..+++|..+||.++|. ..+..++.+......++...+.+.+++++|.....-||.++++.
T Consensus       128 ~dsqIaVahiDI~d~t~~~t~~~s~yd~~~~~l~l~~~Ll~y~~~igG~lf~iGgdny~ift  189 (268)
T 2qv6_A          128 VDGYVQIAHIDINNITGTLTDIVSAYDTYLNVNKVKLALMEELLKYNALLFFIGGDNFMAPS  189 (268)
T ss_dssp             SSCCEEEEEEEETTHHHHTTTTSCHHHHHHHHHHHHHHHHHHHHTTTCCCEEEETTEEEEEC
T ss_pred             CcCceEEEEEEecCccccccccCChHHHHHHHHHHHHHHHHHHHHhCCEEEEECCCEEEEEe
Confidence            45689999999999998 56667999999999999999999999999999988888998886

>3i5c_A Fusion of general control protein GCN4 and WSPR R regulator protein; C-DI-GMP, ggdef, leucine zipper, signaling protein; HET: C2E; 1.94A {Pseudomonas aeruginosa PAO1} PDB: 3i5b_A*

Probab=97.41  E-value=0.001  Score=43.38  Aligned_cols=99  Identities=11%  Similarity=0.078  Sum_probs=66.2

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL   87 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~   87 (123)
                      ....+++++||.+|..+-+..+.+.--.+|..+...+.+.+...+..+-++.||.|++++..  .+   ...+...+-.+
T Consensus        59 ~~~~~l~~idid~f~~in~~~G~~~gd~~L~~ia~~L~~~~~~~~~~~~R~~~d~F~il~~~--~~---~~~~~~~~~~i  133 (206)
T 3i5c_A           59 QSQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLPG--TS---PGGARLLAEKV  133 (206)
T ss_dssp             TCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTCCSTTCEEEEEETTEEEEEEET--CC---HHHHHHHHHHH
T ss_pred             CCcEEEEEEECcchhHHHhccChhHHHHHHHHHHHHHHHhcCCCCcEEEEecCCeEEEEECC--CC---HHHHHHHHHHH
Confidence            34689999999999999988888888788888877777766556677889999999988732  22   22344444455


Q ss_pred             HHHhhhhhhcCCC---CCceeEEEeee
Q psy13822         88 LHHSGRFKIRHLP---YTPLRLRIGLH  111 (123)
Q Consensus        88 ~~~~~~~~~~~~~---~~~l~~rIGi~  111 (123)
                      .+.+.........   ...+.+.||+.
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~siGi~  160 (206)
T 3i5c_A          134 RRTVESLQISHDQPRPGSHLTVSIGVS  160 (206)
T ss_dssp             HHHHHHTCCEECSSSTTEECCEEEEEE
T ss_pred             HHHHHhcccccCCCCCCceEEEEEEEE
Confidence            5555544322111   12455666654

>3hva_A Protein FIMX; ggdef diguanylate cyclase, biofilm, C-DI-GMP, transferase; 2.04A {Pseudomonas aeruginosa PAO1}

Probab=97.33  E-value=0.0012  Score=41.92  Aligned_cols=99  Identities=12%  Similarity=0.079  Sum_probs=68.6

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL   87 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~   87 (123)
                      ....+++++||.+|..+-+..+.+.--.+|..+-..+.+.+.. +..+-++.||.++++...     .....+...+-.+
T Consensus        42 ~~~~~l~~i~id~f~~in~~~G~~~gd~~L~~~a~~L~~~~~~-~~~~~R~~~d~F~ill~~-----~~~~~~~~~~~~i  115 (177)
T 3hva_A           42 RKPSTLAYIHLNGYPSLQADHGLSGIDLLLGQLAGLMREQFGE-EADLARFGDSIFAALFKG-----KTPEQAQAALQRL  115 (177)
T ss_dssp             CCCEEEEEEEETTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG-GCEEEECSSSEEEEEEET-----CCHHHHHHHHHHH
T ss_pred             CCCeEEEEEeCCCHHHHHHHhCchhHHHHHHHHHHHHHHhCCC-CceEEEecCCeEEEEeCC-----CCHHHHHHHHHHH
Confidence            4568999999999999988888888888888888888888766 567888999999888732     1234455556666


Q ss_pred             HHHhhhhhhc-CCCCCceeEEEeeec
Q psy13822         88 LHHSGRFKIR-HLPYTPLRLRIGLHT  112 (123)
Q Consensus        88 ~~~~~~~~~~-~~~~~~l~~rIGi~~  112 (123)
                      ++.+...... ......+.+.||+..
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~siGi~~  141 (177)
T 3hva_A          116 LKKVENHLFELNGRSAQATLSIGVAG  141 (177)
T ss_dssp             HHHHHTCCEEETTEEECCCEEEEEEE
T ss_pred             HHHHHhCccccCCceeeEEEEEEEEE
Confidence            6666542111 111224666777653

>3mtk_A Diguanylate cyclase/phosphodiesterase; structural genomics, PSI-2, protein structure initiative; 2.24A {Caldicellulosiruptor saccharolyticus}

Probab=97.26  E-value=0.002  Score=41.22  Aligned_cols=96  Identities=8%  Similarity=0.010  Sum_probs=67.3

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL   87 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~   87 (123)
                      ....+++++||.+|..+-+..+.+.--.+|..+-..+.+.+.. +..+-++.||.++++...    .+    +...+-.+
T Consensus        34 ~~~~~l~~idid~f~~in~~~G~~~gd~lL~~ia~~L~~~~~~-~~~~~R~~~d~F~il~~~----~~----~~~~~~~l  104 (178)
T 3mtk_A           34 CIDTYLIFLEVRDLEKLNVTYGYDLVDELIIHISKRIKDIAGE-GNKAFKIGFDRFAIICKS----EN----ISDFIERM  104 (178)
T ss_dssp             CTTEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHHCS-SSEEEEEETTEEEEEEEC----SS----HHHHHHHH
T ss_pred             CCceEEEEEEhhHhhHHHHHhChHHHHHHHHHHHHHHHHhcCC-CCEEEEecCCEEEEEecC----cc----HHHHHHHH
Confidence            4568899999999999999889888888888888888887754 567888999999888743    11    44445555


Q ss_pred             HHHhhhhhhcCCCCCceeEEEeeec
Q psy13822         88 LHHSGRFKIRHLPYTPLRLRIGLHT  112 (123)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~rIGi~~  112 (123)
                      ++.+............+.+.||+..
T Consensus       105 ~~~~~~~~~~~~~~~~~~~siGi~~  129 (178)
T 3mtk_A          105 LSQLLLPYNVNGNLIRVNFNIGAAQ  129 (178)
T ss_dssp             HHHHTSCEEETTEEECCCEEEEEEE
T ss_pred             HHHhcCCEEECCEEEEEEEEEEEEE
Confidence            5555532211111225667777754

>3tvk_A DGC, diguanylate cyclase YDEH; putative zinc sensor, C-DI-GMP, transfe; HET: C2E; 1.80A {Escherichia coli}

Probab=97.24  E-value=0.0013  Score=42.91  Aligned_cols=98  Identities=10%  Similarity=0.098  Sum_probs=65.2

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL   87 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~   87 (123)
                      ..+.+++++||.+|..+-+..+...--.+|..+-..+.+.+.. +..+-++-||.|++++..     .....+...+-.+
T Consensus        31 ~~~~~l~~iDiD~FK~INd~~Gh~~GD~vL~~va~~L~~~~~~-~~~v~R~gGDEF~ill~~-----~~~~~~~~~~~~i  104 (179)
T 3tvk_A           31 PLNLYLMLLDIDRFKLVNDTYGHLIGDVVLRTLATYLASWTRD-YETVYRYGGEEFIIIVKA-----ANDEEACRAGVRI  104 (179)
T ss_dssp             TSEEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHTSCT-TSCEEECSSSEEEEEEEE-----SSHHHHHHHHHHH
T ss_pred             CCCEEEEEEECCCCcHHHhccCchhHHHHHHHHHHHhHhcCCc-ccEEEEccCCEEEEEcCC-----CCHHHHHHHHHHH
Confidence            3468999999999999887777666666777777777776644 467888999999988732     1233455566667


Q ss_pred             HHHhhhhhhcCCC-CCceeEEEeee
Q psy13822         88 LHHSGRFKIRHLP-YTPLRLRIGLH  111 (123)
Q Consensus        88 ~~~~~~~~~~~~~-~~~l~~rIGi~  111 (123)
                      ++.+......... ...+.+.||+.
T Consensus       105 ~~~i~~~~~~~~~~~~~vt~SiGia  129 (179)
T 3tvk_A          105 CQLVDNHAITHSEGHINITVTAGVS  129 (179)
T ss_dssp             HHHHHHSCEEETTEEECCCEEEEEE
T ss_pred             HHHHHcCCcccCCceEEEEEEEEEE
Confidence            6666553222111 12456666665

>3icl_A EAL/ggdef domain protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics, consortium, NESG; HET: MSE; 2.00A {Methylococcus capsulatus}

Probab=97.21  E-value=0.00092  Score=42.30  Aligned_cols=60  Identities=15%  Similarity=0.138  Sum_probs=50.8

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeC
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG   68 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg   68 (123)
                      ....+++++||.+|..+.+..+.+.--.+|..+-..+.+.+.. +..+-++.||.++++..
T Consensus        28 ~~~~~l~~i~id~f~~in~~~G~~~gd~~L~~~a~~L~~~~~~-~~~~~R~~~d~F~ill~   87 (171)
T 3icl_A           28 GNPVVLLFLDVDNFKSINDSLGHLVGDRLLRATAERIRTAVRD-GDTVARIGGDKFTILLN   87 (171)
T ss_dssp             TSCCEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHSCT-TCEEEEETTTEEEEEES
T ss_pred             CCcEEEEEEEChHhhHHHHHhChHHHHHHHHHHHHHHHHhcCC-CCEEEEecCCEEEEEec
Confidence            4568999999999999999889888888888888888887754 56788899999988874

>3ign_A Diguanylate cyclase; ggdef domain, A1U3W3_marav, NESG, MQR89A, structural genomics, PSI-2, protein structure initiative; HET: C2E; 1.83A {Marinobacter aquaeolei VT8}

Probab=97.08  E-value=0.0027  Score=40.39  Aligned_cols=99  Identities=7%  Similarity=0.052  Sum_probs=67.0

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL   87 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~   87 (123)
                      ....+++++||.+|..+.+..+.+..-.+|..+-..+.+.+.. +..+-++.||.|+++...     .....+...+-.+
T Consensus        37 ~~~~~l~~i~id~f~~in~~~G~~~gd~~L~~ia~~L~~~~~~-~~~~~R~~~d~F~ill~~-----~~~~~~~~~~~~i  110 (177)
T 3ign_A           37 GQATSLVMFDIDHFKPVNDTYGHLAGDEVIRHTADVTRNNIRQ-SDSAGRYGGEEFGIILPE-----TDAESARVICERI  110 (177)
T ss_dssp             CCCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTSCT-TSEEEECSSSEEEEEEET-----CCHHHHHHHHHHH
T ss_pred             CCceEEEEEEchhhHHHHHhhChHHHHHHHHHHHHHHHHhCCC-CCEEEEecCCeEEEEeCC-----CCHHHHHHHHHHH
Confidence            3467899999999999998888888878888877777776644 457888999999888732     2233455555666


Q ss_pred             HHHhhhhhhcC-CCCCceeEEEeeec
Q psy13822         88 LHHSGRFKIRH-LPYTPLRLRIGLHT  112 (123)
Q Consensus        88 ~~~~~~~~~~~-~~~~~l~~rIGi~~  112 (123)
                      ++.+....... .....+.+.||+..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~siGi~~  136 (177)
T 3ign_A          111 REAIEKSTVSTSAGDIQYTVSMGIAQ  136 (177)
T ss_dssp             HHHHHTCCEECSSCEECCCEEEEEEE
T ss_pred             HHHHHhcCcccCCCceeEEEEEEEEe
Confidence            66665432211 11235567777664

>3pjx_A Cyclic dimeric GMP binding protein; ggdef-EAL tandem domain, C-DI-GMP receptor, lyase; 2.00A {Pseudomonas fluorescens} PDB: 3pjw_A 3pju_A* 3pjt_A* 3pfm_A

Probab=97.08  E-value=0.0074  Score=44.04  Aligned_cols=100  Identities=10%  Similarity=0.044  Sum_probs=72.3

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhc---CeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHH
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAY---NVYKVETIGDAYMVVGGLPVRIPDHADQIATMA   84 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~---gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~a   84 (123)
                      ....+++++||.+|..+-+..+.+.--.+|..+-..+.+.+..+   +..+-++-||.+.++....     ....+...+
T Consensus        46 ~~~~~l~~idid~fk~iNd~~G~~~gD~lL~~va~~L~~~~~~~~~~~~~v~R~ggdeF~ill~~~-----~~~~~~~~~  120 (430)
T 3pjx_A           46 ASSGYLLLLRVKDLAGLNQRLGGQRTDELLKAVGEQLSRECAKYPETQNLVTRIRGGEFAVLAPGM-----TREEALQLA  120 (430)
T ss_dssp             CSCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTSGGGTTCEEEEETTEEEEEEETC-----CHHHHHHHH
T ss_pred             cCceEEEEEEchhhhHHHHhcChHHHHHHHHHHHHHHHHHHHhcCCcCceEEEecCceEEEEeCCC-----CHHHHHHHH
Confidence            45678999999999999998898888889999999999888875   6778899999998887332     223344555


Q ss_pred             HHHHHHhhhhhhcCCCCCceeEEEeeec
Q psy13822         85 LDLLHHSGRFKIRHLPYTPLRLRIGLHT  112 (123)
Q Consensus        85 l~~~~~~~~~~~~~~~~~~l~~rIGi~~  112 (123)
                      -.+.+.+............+.+.||+..
T Consensus       121 ~~l~~~l~~~~~~~~~~~~~~~siGi~~  148 (430)
T 3pjx_A          121 QSLDSALSSLYATGATDVAAVASIGLAP  148 (430)
T ss_dssp             HHHHHHHHHHHHTTSCSCTTCEEEEEEE
T ss_pred             HHHHHHHhhhhhcCCeeeeEEEEEEEEe
Confidence            6666666554332223345667777753

>3hvw_A Diguanylate-cyclase (DGC); alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.70A {Pseudomonas aeruginosa}

Probab=96.97  E-value=0.0019  Score=41.38  Aligned_cols=97  Identities=11%  Similarity=0.021  Sum_probs=67.7

Q ss_pred             eeEEEEEeec---cChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHH
Q psy13822          9 REVTIYFSDI---VGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMAL   85 (123)
Q Consensus         9 ~~~tvlf~di---~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al   85 (123)
                      +..+++++||   .+|..+-+..+.+.--.+|..+...+.+.+..  ..+-++.||.++++...     .....+...+-
T Consensus        26 ~~~~l~~i~i~~id~f~~in~~~G~~~gD~~L~~ia~~L~~~~~~--~~v~R~~~deF~ill~~-----~~~~~~~~~~~   98 (176)
T 3hvw_A           26 GALTVIAADLLPLALLNTIIRTLGYPFSNDLMLEARDRIRAELPD--FTLYKISPTRFGLLLPR-----QQQEETESVCL   98 (176)
T ss_dssp             SEEEEEEEECSCHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCTT--SCEEEEETTEEEEEEEG-----GGGGGHHHHHH
T ss_pred             CCceEEEEEecCHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHCCC--CeEEEecCCEEEEEeCC-----CCHHHHHHHHH
Confidence            4678889999   88998888889888888999999999988877  78889999999988732     12223445556


Q ss_pred             HHHHHhhhhhhcCCCCCceeEEEeeec
Q psy13822         86 DLLHHSGRFKIRHLPYTPLRLRIGLHT  112 (123)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~l~~rIGi~~  112 (123)
                      .+++.+............+.+.||+..
T Consensus        99 ~l~~~~~~~~~~~~~~~~~~~siGi~~  125 (176)
T 3hvw_A           99 RLLRAFESPVVCRGIPIKANVGLGVLP  125 (176)
T ss_dssp             HHHHHTTSCEEETTEEECCCCEEEEEE
T ss_pred             HHHHHHhCCcccCCEEEEEEEEEEEEe
Confidence            666665542111111224566666653

>3qyy_A Response regulator; C-DI-GMP, DGC, ggdef, competitive inhibition, xanthomonas Ca signaling protein-inhibitor complex; HET: C2E; 1.90A {Xanthomonas campestris PV}

Probab=96.85  E-value=0.0086  Score=37.63  Aligned_cols=58  Identities=12%  Similarity=0.074  Sum_probs=47.1

Q ss_pred             eeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEe
Q psy13822          9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVG   67 (123)
Q Consensus         9 ~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~f   67 (123)
                      ...+++++||.+|..+-+..+.+.--.+|..+...+.+.+.. +..+-++.||.|+++.
T Consensus        41 ~~~~l~~idid~f~~in~~~G~~~gd~~L~~ia~~L~~~~~~-~~~~~R~~~deF~il~   98 (167)
T 3qyy_A           41 WPFVLFVLDMDNLKPINDRFGHLAGDRVLVRLVESAYGWLGA-QDWIGRWGGDEFLIGV   98 (167)
T ss_dssp             CCCEEEEEEESSHHHHHHHHCHHHHHHHHHHHHHHHTTTCCT-TCEEEEEETTEEEEEE
T ss_pred             CcEEEEEEechhhhHHHhhcCcHHHHHHHHHHHHHHHHhcCC-CCEEEeecCceEEEEc
Confidence            358999999999999998888887777777777776666543 5678889999998887

>3ezu_A Ggdef domain protein; multidomain protein of unknown function with GG domain, structural genomics, joint center for structural GE JCSG; 1.95A {Geobacter sulfurreducens}

Probab=96.83  E-value=0.0089  Score=42.60  Aligned_cols=98  Identities=15%  Similarity=0.089  Sum_probs=65.6

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL   87 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~   87 (123)
                      ....+++++||.+|..+-+..+.+.--.+|..+-..+.+.+.. +..+-++-||.|.++...  .+   ...+...+-.+
T Consensus       211 ~~~~all~idId~fk~INd~~G~~~gD~lL~~va~~L~~~~~~-~d~v~R~ggdeF~ill~~--~~---~~~~~~~~~~l  284 (342)
T 3ezu_A          211 GSNVGIMLIDLDYFKLVGDNYGHQTGDRILQLVAETITSHLRR-SDVVGRYDGDEFVVYLSP--VE---PASLRTVAENL  284 (342)
T ss_dssp             TCEEEEEEEEEEECCCCC-----CHHHHHHHHHHHHHHHTCCT-TCEEEECSSSEEEEEESS--CC---HHHHHHHHHHH
T ss_pred             CCcEEEEEEECCcHHHHHHhhChHHHHHHHHHHHHHHHHHCCC-CcEEEEEcCCEEEEEECC--CC---HHHHHHHHHHH
Confidence            3568999999999999998888887778888888888776654 567888999999888732  22   23445555566


Q ss_pred             HHHhhhhhhcCCCCCceeEEEeeecCc
Q psy13822         88 LHHSGRFKIRHLPYTPLRLRIGLHTGR  114 (123)
Q Consensus        88 ~~~~~~~~~~~~~~~~l~~rIGi~~G~  114 (123)
                      ++.+.....   ...++.+.||+..|.
T Consensus       285 ~~~l~~~~~---~~~~~~~siGva~~~  308 (342)
T 3ezu_A          285 RRSIEEESA---RMVPVTASIGVAQGI  308 (342)
T ss_dssp             HHHHHHHTT---TTCCEEEEEEEEEEE
T ss_pred             HHHHhcccC---CccceEEEEEEEEEe
Confidence            666554422   234678888888653

>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*

Probab=96.33  E-value=0.022  Score=40.08  Aligned_cols=60  Identities=8%  Similarity=0.062  Sum_probs=44.2

Q ss_pred             eeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeC
Q psy13822          9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGG   68 (123)
Q Consensus         9 ~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg   68 (123)
                      ...+++++||.+|..+-+..+...--.++..+...+.+.+...+..+.++.||.|++++.
T Consensus       201 ~~~~l~~idid~fk~ind~~G~~~gD~~L~~va~~l~~~~~~~~~~~~R~ggdeF~ill~  260 (358)
T 3bre_A          201 SQLSLLMIDVDYFKSYNDTFGHVAGDEALRQVAGAIREGCSRSSDLAARYGGEEFAMVLP  260 (358)
T ss_dssp             CCEEEEEEEETTHHHHHHHHCHHHHHHHHHHHHHHHHTTCCSTTCEEEEEETTEEEEEEE
T ss_pred             CcEEEEEEEchhhhHHHHhcChHHHHHHHHHHHHHHHHhcCCcCcEEEEecCCeEEEEeC
Confidence            357899999999988877667666656666666666554444456788899999988874

>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*

Probab=95.89  E-value=0.047  Score=39.89  Aligned_cols=98  Identities=13%  Similarity=0.082  Sum_probs=67.8

Q ss_pred             eeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHHH
Q psy13822          9 REVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDLL   88 (123)
Q Consensus         9 ~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~~   88 (123)
                      ...+++++||.+|..+-+..+...--.+|..+-..+.+.+.. ...+-++-||.|.++...  .   ....+...+-.++
T Consensus       318 ~~~~l~~idid~fk~iNd~~Gh~~gD~~L~~~a~~l~~~~~~-~d~~~R~ggdeF~il~~~--~---~~~~~~~~~~~i~  391 (459)
T 1w25_A          318 DPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRA-IDLPCRYGGEEFVVIMPD--T---ALADALRIAERIR  391 (459)
T ss_dssp             CCCEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHTSCT-TSEEEECSSSEEEEEETT--C---CHHHHHHHHHHHH
T ss_pred             CcEEEEEEEchhhchhhhccChhhHHHHHHHHHHHHHHhCCC-cCEEEEEcCceEEEEeCC--C---CHHHHHHHHHHHH
Confidence            468999999999999999999888888888888888877654 457888999999998732  1   2334555666666


Q ss_pred             HHhhhhhhcCC---CCCceeEEEeeec
Q psy13822         89 HHSGRFKIRHL---PYTPLRLRIGLHT  112 (123)
Q Consensus        89 ~~~~~~~~~~~---~~~~l~~rIGi~~  112 (123)
                      +.+........   ....+.+.||+..
T Consensus       392 ~~~~~~~~~~~~~~~~~~~t~siG~~~  418 (459)
T 1w25_A          392 MHVSGSPFTVAHGREMLNVTISIGVSA  418 (459)
T ss_dssp             HHHHTSCEECGGGSCEECCCEEEEEEE
T ss_pred             HHHHhCCccccCCCceeEEEEEEEEEe
Confidence            66553221110   1124667777654

>2qv6_A MJ0145, GTP cyclohydrolase III, MJGC; enzyme, FAPY; HET: GTP; 2.00A {Methanocaldococcus jannaschii}

Probab=89.75  E-value=3.7  Score=28.38  Aligned_cols=57  Identities=16%  Similarity=0.134  Sum_probs=48.1

Q ss_pred             EEEeeccChhhhccCCCH---HHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCC
Q psy13822         13 IYFSDIVGFTTISAYSTP---FEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGL   69 (123)
Q Consensus        13 vlf~di~~~t~l~~~~~~---~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~   69 (123)
                      +..+.|.||-++++.+.|   .++..+-.+++..+.+.+..+||.+..+.=|.++++-+.
T Consensus         4 it~i~i~~Y~~WT~t~g~~RE~~lQ~lQs~l~~~l~~~~~~~~g~~f~~R~D~~ia~tng   63 (268)
T 2qv6_A            4 ITVIQIDNYGPWTVTPNPRRESDLQALQSRLYADLNLMFGAHKGLVFYTRFDNLIAITNG   63 (268)
T ss_dssp             EEEEEETTHHHHHHSSSCCCHHHHHHHHHHHHHHHHHHHHTTTCEEECTTSSEEEEECTT
T ss_pred             EEEEEEcCcccccCCCCchhHHHHHHHHHHHHHHHHHHHHhcCCEEeecccceEEEEeCC
Confidence            345778899999998866   556777788999999999999999999999999999843

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	123
d1fx2a_	235	d.58.29.1 (A:) Receptor-type monomeric adenylyl cy	4e-25
d1azsb_	199	d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {	7e-21
d1wc1a_	197	d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina p	3e-18
d1azsa_	190	d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {D	1e-15

>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase {Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]} Length = 235

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Receptor-type monomeric adenylyl cyclase
species: Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]

 Score = 93.1 bits (230), Expect = 4e-25
 Identities = 29/146 (19%), Positives = 53/146 (36%), Gaps = 28/146 (19%)

Query: 5   PEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYM 64
            E    VT+ F+DI   T + A + P  + D +   +    + I  Y  Y+V+T+GD++M
Sbjct: 7   KEPTDPVTLIFTDIESSTALWA-AHPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFM 65

Query: 65  VVGGLPVRIPDHADQIATMALDLLHHSGRF---------------------------KIR 97
           +    P      A ++    L     +                              ++ 
Sbjct: 66  IASKSPFAAVQLAQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTPPTAHMDPEVY 125

Query: 98  HLPYTPLRLRIGLHTGRPVSKHLRKK 123
              +  LR+R+G+HTG    +H    
Sbjct: 126 SRLWNGLRVRVGIHTGLCDIRHDEVT 151

>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 199

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylyl cyclase IIC1, domain C2a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 81.1 bits (199), Expect = 7e-21
 Identities = 28/128 (21%), Positives = 45/128 (35%), Gaps = 20/128 (15%)

Query: 6   EDFREVTIYFSDIVGFTTIS----AYSTPFEVVDLLNDLYTCFDATINA---YNVYKVET 58
           + +  V + F+ I  F              E + LLN++   FD  ++      V K++T
Sbjct: 2   QSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKT 61

Query: 59  IGDAYMVVGGL-----------PVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLR 107
           IG  YM   GL           P R   H   +   A  L+                +LR
Sbjct: 62  IGSTYMAATGLSAIPSQEHAQEPERQYMHIGTMVEFAYALVGKLDAINKHSFN--DFKLR 119

Query: 108 IGLHTGRP 115
           +G++ G  
Sbjct: 120 VGINHGPV 127

>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis [TaxId: 118562]} Length = 197

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylate cyclase CyaC
species: Spirulina platensis [TaxId: 118562]

 Score = 74.2 bits (181), Expect = 3e-18
 Identities = 32/120 (26%), Positives = 45/120 (37%), Gaps = 11/120 (9%)

Query: 5   PEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYM 64
           PE  R +TI FSDIVGFT +S       V +LLN+        +        + +GDA M
Sbjct: 3   PEP-RLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIM 61

Query: 65  VVGGLPVRIPDHADQIATMALDL----------LHHSGRFKIRHLPYTPLRLRIGLHTGR 114
            + G P  +         +A                  R  +      P+R R G+H G 
Sbjct: 62  ALYGAPEEMSPSEQVRRAIATARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGM 121

>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis familiaris) [TaxId: 9615]} Length = 190

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylyl cyclase VC1, domain C1a
species: Dog (Canis familiaris) [TaxId: 9615]

 Score = 67.3 bits (163), Expect = 1e-15
 Identities = 33/110 (30%), Positives = 56/110 (50%), Gaps = 2/110 (1%)

Query: 6   EDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMV 65
           +    V+I F+DI GFT++++  T  E+V  LN+L+  FD      +  +++ +GD Y  
Sbjct: 10  QKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYC 69

Query: 66  VGGLPVRIPDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRP 115
           V GLP    DHA     M +D++      +          +R+G+H+GR 
Sbjct: 70  VSGLPEARADHAHCCVEMGMDMIEAISLVREMTGVNV--NMRVGIHSGRV 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	123
d1azsa_	190	Adenylyl cyclase VC1, domain C1a {Dog (Canis famil	99.97
d1azsb_	199	Adenylyl cyclase IIC1, domain C2a {Rat (Rattus nor	99.96
d1wc1a_	197	Adenylate cyclase CyaC {Spirulina platensis [TaxId	99.96
d1fx2a_	235	Receptor-type monomeric adenylyl cyclase {Trypanos	99.89
d1w25a3	162	Response regulator PleD, C-terminal domain {Caulob	97.08

>d1azsa_ d.58.29.1 (A:) Adenylyl cyclase VC1, domain C1a {Dog (Canis familiaris) [TaxId: 9615]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylyl cyclase VC1, domain C1a
species: Dog (Canis familiaris) [TaxId: 9615]

Probab=99.97  E-value=2.5e-31  Score=175.99  Aligned_cols=120  Identities=28%  Similarity=0.493  Sum_probs=111.6

Q ss_pred             CCCCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHH
Q psy13822          2 PVDPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIA   81 (123)
Q Consensus         2 ~~~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~   81 (123)
                      ++..++++++||||+||+|||.+++.++|+++..+|++++..+++++.+|||+++|+.||++|++||.|....+++.+|+
T Consensus         6 ~~~~~~~~~Vtvlf~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~gg~~~k~~GD~~~a~f~~~~~~~d~~~~a~   85 (190)
T d1azsa_           6 KIYIQKHDNVSILFADIEGFTSLASQCTAQELVMTLNELFARFDKLAAENHCLRIKILGDCYYCVSGLPEARADHAHCCV   85 (190)
T ss_dssp             CCEEEEEEEEEEEEEEEETHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTEEEEEEETTEEEEEESCSSCCSTHHHHHH
T ss_pred             hhhhhcCCcEEEEEEEcCChhHHHHhCCHHHHHHHHHHHHHHHhhcccccCccccccceeEEEEEecCCCccccchhHHH
Confidence            44567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822         82 TMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK  123 (123)
Q Consensus        82 ~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~  123 (123)
                      .+|++|++.+++++..  ...++++|||||+|+|++|.+|++
T Consensus        86 ~~a~~~~~~~~~~~~~--~~~~l~~riGih~G~v~~g~~G~~  125 (190)
T d1azsa_          86 EMGMDMIEAISLVREM--TGVNVNMRVGIHSGRVHCGVLGLR  125 (190)
T ss_dssp             HHHHHHHHHHHHHHHH--HCSCCEEEEEEEEEEEEEEECSSS
T ss_pred             HHHHHHHHHHhhhhcc--cccccceEEEEeeecccccccccc
Confidence            9999999999988754  345899999999999999999974

>d1azsb_ d.58.29.1 (B:) Adenylyl cyclase IIC1, domain C2a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylyl cyclase IIC1, domain C2a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=3.8e-29  Score=166.54  Aligned_cols=117  Identities=23%  Similarity=0.412  Sum_probs=101.7

Q ss_pred             CCceeeEEEEEeeccChhhhccCCC----HHHHHHHHHHHHHHHHHHHhh---cCeEEEeeeCcEEEEEeCCCCCC----
Q psy13822          5 PEDFREVTIYFSDIVGFTTISAYST----PFEVVDLLNDLYTCFDATINA---YNVYKVETIGDAYMVVGGLPVRI----   73 (123)
Q Consensus         5 ~~~~~~~tvlf~di~~~t~l~~~~~----~~~~~~~l~~~~~~~~~~v~~---~gg~~~~~~Gd~~~~~fg~~~~~----   73 (123)
                      .+++.++||||+||+|||.+++.++    |++++++||+++..|++++..   |||+++|++||++|++||.|..+    
T Consensus         1 ~~~~~~vtvlF~Di~gfT~l~~~~~~~~~~~~~~~~Ln~~~~~fd~~~~~~~~~g~~~~k~iGD~~~a~~g~~~~~~~~~   80 (199)
T d1azsb_           1 HQSYDCVCVMFASIPDFKEFYTESDVNKEGLECLRLLNEIIADFDDLLSKPKFSGVEKIKTIGSTYMAATGLSAIPSQEH   80 (199)
T ss_dssp             CCEEEEEEEEEEECTTHHHHCCCCTTTTTTHHHHHHHHHHHHHHHGGGGSGGGTTEEEEEEETTEEEEEESSSCC-----
T ss_pred             CCCCCcEEEEEEEcCCChHHHHhCCcccCHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEEecCeEEEEecCCCCccccc
Confidence            3678999999999999999998764    789999999999999999876   89999999999999999987542    


Q ss_pred             -------chHHHHHHHHHHHHHHHhhhhhhcCCCCCceeEEEeeecCceeEEeecCC
Q psy13822         74 -------PDHADQIATMALDLLHHSGRFKIRHLPYTPLRLRIGLHTGRPVSKHLRKK  123 (123)
Q Consensus        74 -------~~~~~~a~~~al~~~~~~~~~~~~~~~~~~l~~rIGi~~G~v~~g~iG~~  123 (123)
                             ..++.+++++|++|++.+++++...  ..++++|||||+|+|++|++|++
T Consensus        81 a~~~~~~~~~~~~av~~a~~~~~~~~~~~~~~--~~~l~~rIGIh~G~v~~Gv~g~~  135 (199)
T d1azsb_          81 AQEPERQYMHIGTMVEFAYALVGKLDAINKHS--FNDFKLRVGINHGPVIAGVIGAQ  135 (199)
T ss_dssp             -----CTTHHHHHHHHHHHHHHHHHHHHHHHH--TCCCCCEEEEEEEEEEEEEECSS
T ss_pred             ccchHHHHHhHHHHHHHHHHHHHHhhhccccC--CCCeeEEeeeeecCceeeeeccc
Confidence                   2367889999999999998876543  45789999999999999999864

>d1wc1a_ d.58.29.1 (A:) Adenylate cyclase CyaC {Spirulina platensis [TaxId: 118562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Adenylate cyclase CyaC
species: Spirulina platensis [TaxId: 118562]

Probab=99.96  E-value=2.9e-28  Score=161.39  Aligned_cols=117  Identities=26%  Similarity=0.369  Sum_probs=101.4

Q ss_pred             CceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCC--chHHHHHHHH
Q psy13822          6 EDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRI--PDHADQIATM   83 (123)
Q Consensus         6 ~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~--~~~~~~a~~~   83 (123)
                      +|+|++|+||+||+|||++++.++|+++..++++|+..+++++.+|||++.|+.||++|++|+.|...  ..++..|+.+
T Consensus         3 pe~r~vtvlF~Di~gfT~l~~~~~~~~~~~~l~~~~~~~~~~i~~~~G~v~k~~GD~~~~~f~~~~~~~~~~~~~~a~~~   82 (197)
T d1wc1a_           3 PEPRLITILFSDIVGFTRMSNALQSQGVAELLNEYLGEMTRAVFENQGTVDKFVGDAIMALYGAPEEMSPSEQVRRAIAT   82 (197)
T ss_dssp             CEEEEEEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESSSSCCCHHHHHHHHHHH
T ss_pred             CccEEEEEEEEEeCCHHHHHHhCCHHHHHHHHHHHHHHHHhhHhhhhhhceeeccceEEEEecCCccccchhhhHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999988654  3567788888


Q ss_pred             HHHHHHHhhhhhh--------cCCCCCceeEEEeeecCceeEEeecC
Q psy13822         84 ALDLLHHSGRFKI--------RHLPYTPLRLRIGLHTGRPVSKHLRK  122 (123)
Q Consensus        84 al~~~~~~~~~~~--------~~~~~~~l~~rIGi~~G~v~~g~iG~  122 (123)
                      +..++++....+.        ......++++|||||+|++++|.+|+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rIGI~~G~v~~g~iG~  129 (197)
T d1wc1a_          83 ARQMLVALEKLNQGWQERGLVGRNEVPPVRFRCGIHQGMAVVGLFGS  129 (197)
T ss_dssp             HHHHHHHHHHHHHHHHHTTSSSSTTCCCCCEEEEEEEEEEEEEEEEC
T ss_pred             HHHHHHHhhhcccchhcccccccCCCCceEEEEEEEEEEEEeccccc
Confidence            8888777655432        11234579999999999999999996

>d1fx2a_ d.58.29.1 (A:) Receptor-type monomeric adenylyl cyclase {Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: Adenylyl and guanylyl cyclase catalytic domain
domain: Receptor-type monomeric adenylyl cyclase
species: Trypanosome (Trypanosoma brucei), different isoform [TaxId: 5691]

Probab=99.89  E-value=3.7e-23  Score=140.25  Aligned_cols=112  Identities=26%  Similarity=0.333  Sum_probs=86.1

Q ss_pred             CCCceeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHH
Q psy13822          4 DPEDFREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATM   83 (123)
Q Consensus         4 ~~~~~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~   83 (123)
                      +....+++|+||+||+|||.+++. .|+++..+|+.|+..+++++.+|+|+++|++||++|++|+.|..       ++.+
T Consensus         6 p~~~~~~vtilF~DI~gfT~l~e~-~p~~~~~~l~~~~~~~~~~i~~~~G~~~k~~GD~~l~~F~~p~~-------a~~~   77 (235)
T d1fx2a_           6 PKEPTDPVTLIFTDIESSTALWAA-HPDLMPDAVAAHHRMVRSLIGRYKCYEVKTVGDSFMIASKSPFA-------AVQL   77 (235)
T ss_dssp             CCCTTSCEEEEEEEETTHHHHHHH-CTTTHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEESCHHH-------HHHH
T ss_pred             CCCCCCCEEEEEEeccChHHHHHh-CHHHHHHHHHHHHHHHHHHHHHcCCEEEEecCCcEEEeeCCCch-------HHHH
Confidence            344577899999999999999986 45789999999999999999999999999999999999987644       4444


Q ss_pred             HHHHHHHhhhhhh--------------------c--------------CCCCCceeEEEeeecCceeEEeecCC
Q psy13822         84 ALDLLHHSGRFKI--------------------R--------------HLPYTPLRLRIGLHTGRPVSKHLRKK  123 (123)
Q Consensus        84 al~~~~~~~~~~~--------------------~--------------~~~~~~l~~rIGi~~G~v~~g~iG~~  123 (123)
                      |++++..+...+.                    .              ......+++|||||+|++++|..|++
T Consensus        78 A~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vriGi~~G~v~~g~~g~~  151 (235)
T d1fx2a_          78 AQELQLCFLHHDWGTNALDDSYREFEEQRAEGECEYTPPTAHMDPEVYSRLWNGLRVRVGIHTGLCDIRHDEVT  151 (235)
T ss_dssp             HHHHHHHHHHSCCSCSHHHHHHHHHHHHHHHHCSSCCCSSTTSCHHHHHHHCCSCCEEEEEEEECCEEEECTTS
T ss_pred             HHHHHHHHhhcccchhhhhhhhHHHHHHHHHhhhhhhhhHHHHHHHHhhccCCCceEEEEEEecceEEeccccc
Confidence            4444333211100                    0              00123589999999999999998864

>d1w25a3 d.58.29.2 (A:294-455) Response regulator PleD, C-terminal domain {Caulobacter crescentus [TaxId: 155892]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Nucleotide cyclase
family: GGDEF domain
domain: Response regulator PleD, C-terminal domain
species: Caulobacter crescentus [TaxId: 155892]

Probab=97.08  E-value=0.0028  Score=38.38  Aligned_cols=100  Identities=14%  Similarity=0.108  Sum_probs=67.4

Q ss_pred             eeeEEEEEeeccChhhhccCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEeeeCcEEEEEeCCCCCCchHHHHHHHHHHHH
Q psy13822          8 FREVTIYFSDIVGFTTISAYSTPFEVVDLLNDLYTCFDATINAYNVYKVETIGDAYMVVGGLPVRIPDHADQIATMALDL   87 (123)
Q Consensus         8 ~~~~tvlf~di~~~t~l~~~~~~~~~~~~l~~~~~~~~~~v~~~gg~~~~~~Gd~~~~~fg~~~~~~~~~~~a~~~al~~   87 (123)
                      ....+++.+||.+|..+.+..+.+..-.++..+-..+.+.+..++ .+-++.||.+.+++..     .+...+...+..+
T Consensus        25 ~~~~~l~~i~id~~~~in~~~G~~~~d~ll~~~a~~l~~~~~~~d-~~~R~~~~~F~il~~~-----~~~~~~~~~~~~~   98 (162)
T d1w25a3          25 GDPVSALLIDIDFFKKINDTFGHDIGDEVLREFALRLASNVRAID-LPCRYGGEEFVVIMPD-----TALADALRIAERI   98 (162)
T ss_dssp             SCCCEEEEEEETTHHHHHHHSCHHHHHHHHHHHHHHHHHTSCTTS-EEEECSSSEEEEEETT-----CCHHHHHHHHHHH
T ss_pred             CCCEEEEEeccccchhccccccccccchhhhhhhhhhhhccCCcc-eeeecCCCeEEEEeec-----cchhhhhhHHHHH
Confidence            456889999999999999989988888888888888888876654 5888889999887722     2333344444455


Q ss_pred             HHHhhhhhhc--C-CCCCceeEEEeeecC
Q psy13822         88 LHHSGRFKIR--H-LPYTPLRLRIGLHTG  113 (123)
Q Consensus        88 ~~~~~~~~~~--~-~~~~~l~~rIGi~~G  113 (123)
                      .+.+......  . .....+.+.+|+...
T Consensus        99 ~~~~~~~~~~~~~~~~~~~i~~siGia~~  127 (162)
T d1w25a3          99 RMHVSGSPFTVAHGREMLNVTISIGVSAT  127 (162)
T ss_dssp             HHHHHTSCEECGGGSCEECCCEEEEEEEC
T ss_pred             HHHHHhhccccccccccccccccCceeec
Confidence            5555432211  1 111245666777543