Psyllid ID: psy13845

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430
MTLYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPVKRKTISCLLSGDLIMTSLFPFTPPIVKKLLGWKKGDGEDKYSEKAVKSLVKKLKKSNGLDELEKAITTQDPNTKCVTIPSARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHTQGICTCNVEREELGKMVENLTKNARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHGGYMSEDGDATDALSLSPSPAIPAGDTQPVMYCEPVFWCSISYYELNTRVGETFHASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKGPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKGVRSLSVAKEKLF
cEEEEEccEEEEEEcccccEEEEcccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccEEEEccccccccccccccccccccEEEEEEEEccccccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccccccEEEcccEEEEccccccccccccEEcccccccccHHHHHHHHccccccEEEEEcEEcccccccEEEEcccccccccHHHHHHccccccEEEEEEcccccc
cEEEEEccEEEEEEcccccEEEEcHHHHHHHcccccccEEEcccccEEEEEEccccccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccccEEEEcccccccccEEEccccccccEEEEEEEEEcccccccccccccHHcEcccccccccEEEccccEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccEEEEEEEccEEccccEEEcccEEEEEccccccEccEEEccccccccccHHHHHHHHHHccccEEEEEccccccEccEEEccccccccccHHHHHHHHHHcccEEEEEEccEccc
mtlyyiggevfaeclsdssifvqspncnqrygwhpatvckippvkrktiscllsgdlimtslfpftppiVKKLlgwkkgdgedkySEKAVKSLVKKLKKSNGLDELEKAittqdpntkcvtipsartdkgstdlsnrskglphviycrlwrwpslqshnelrsidlcafgfslkrdqvcvnpyhyqrihtqgictcnvEREELGKMVENLTKNartdkgstdlsnrskglphviycrlwrwpslqshnelrsidlcafgfslkrdqvcvnpyhyqrihggymsedgdatdalslspspaipagdtqpvmycepvfwCSISYYELNtrvgetfhasqpsisvdgftdpsnseRFCLGLLSNVNRNHVVEQIRRHigkgpsisvdgftdpsnseRFCLGLLSNVNRNHVVEQIRRHIGKGVRSLSVAKEKLF
MTLYYIGGEVFAECLSDSSIFVQSPNCNQRYGWhpatvckippvKRKTISCLLSGDLIMTSLFPFTPPIVKKLLGwkkgdgedkysEKAVKSLVKklkksngldelekaittqdpntkcvtipsartdkgstdlsnrskgLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHTQGICTCNVEREELGKMVENLTknartdkgstdlsnrskglpHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHGGYMSEDGDATDALSLSPSPAIPAGDTQPVMYCEPVFWCSISYYELNTRVGETFHASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRrhigkgpsisvDGFTDPSNSERFCLGLLSNVNRNHVVEQIrrhigkgvrslsvakeklf
MTLYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPVKRKTISCLLSGDLIMTSLFPFTPPIVKKLLGWKKGDGEDKYSEKAvkslvkklkksNGLDELEKAITTQDPNTKCVTIPSARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHTQGICTCNVEREELGKMVENLTKNARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHGGYMSEDGDATDALSLSPSPAIPAGDTQPVMYCEPVFWCSISYYELNTRVGETFHASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKGPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKGVRSLSVAKEKLF
**LYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPVKRKTISCLLSGDLIMTSLFPFTPPIVKKLLGWKK**************************************************************LPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHTQGICTCNVEREELG*************************LPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHGGYM**********************TQPVMYCEPVFWCSISYYELNTRVGETFHAS***ISVDGF******ERFCLGLLSNVNRNHVVEQIRRHIGKGPSISVDGFT****SERFCLGLLSNVNRNHVVEQIRRHIGKGV***********
MTLYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPVKRKTISCLLSGDLIMTSLFPFTPPIVKKLLGWKK**G*DKYSEKAVKSLVKKLKKSNGLDELEKAITTQDPNTKCVTI***************SKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHTQ**********ELGKMVENLTKNARTDKGST*****************************************************************************AIPAGDTQPVMYCEPVFWCSISYYE**T******HASQPSISVDGFTDPSNSERFCLGLL************RRHIGKGPSISVDGFTDPSNSERFCLGLLS*************HIGKGVRSLSVAKEKL*
MTLYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPVKRKTISCLLSGDLIMTSLFPFTPPIVKKLLGWKKGDGEDKYSEKAVKSLVKKLKKSNGLDELEKAITTQDPNTKCVTIPSARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHTQGICTCNVEREELGKMVENLTKNARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHGGYMSEDGDATDALSLSPSPAIPAGDTQPVMYCEPVFWCSISYYELNTRVGETFHASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKGPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKGVRSLSVAKEKLF
MTLYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPVKRKTISCLLSGDLIMTSLFPFTPPIVKKLLGWKKGDGEDKYSEKAVKSLVKKLKKSNGLDELEKAITTQDPNTKCVTIPSARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHTQGICTCNVEREE****VENLTKNA******TDLSNRSKGLPHVIYCRLWRWPSLQS***L****L*********DQVCV*********************************GDTQPVMYCEPVFWCSISYYELNTRVGETFHASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKGPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKGVRSLSVAKEKL*
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MTLYYIGGEVFAECLSDSSIFVQSPNCNQRYGWHPATVCKIPPVKRKTISCLLSGDLIMTSLFPFTPPIVKKLLGWKKGDGEDKYSEKAVKSLVKKLKKSNGLDELEKAITTQDPNTKCVTIPSARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHTQGICTCNVEREELGKMVENLTKNARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHGGYMSEDGDATDALSLSPSPAIPAGDTQPVMYCEPVFWCSISYYELNTRVGETFHASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKGPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKGVRSLSVAKEKLF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query430 2.2.26 [Sep-21-2011]
P84025425 Mothers against decapenta yes N/A 0.648 0.656 0.525 1e-76
P84024425 Mothers against decapenta yes N/A 0.648 0.656 0.525 1e-76
Q8BUN5425 Mothers against decapenta yes N/A 0.648 0.656 0.525 1e-76
P84022425 Mothers against decapenta yes N/A 0.648 0.656 0.525 1e-76
P84023426 Mothers against decapenta yes N/A 0.651 0.657 0.519 4e-76
Q9I9P9468 Mothers against decapenta no N/A 0.651 0.598 0.464 2e-71
O70436467 Mothers against decapenta no N/A 0.651 0.599 0.462 3e-71
Q15796467 Mothers against decapenta no N/A 0.651 0.599 0.459 7e-71
Q62432467 Mothers against decapenta no N/A 0.651 0.599 0.459 8e-71
Q1W668467 Mothers against decapenta no N/A 0.651 0.599 0.459 8e-71
>sp|P84025|SMAD3_RAT Mothers against decapentaplegic homolog 3 OS=Rattus norvegicus GN=Smad3 PE=1 SV=1 Back     alignment and function desciption
 Score =  287 bits (735), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 175/333 (52%), Positives = 208/333 (62%), Gaps = 54/333 (16%)

Query: 59  MTSLFPFTPPIVKKLLGWKKGDG---EDKYSEKAVKSLVKKLKKSNGLDELEKAITTQDP 115
           M+S+ PFTPPIVK+LLGWKKG+    E+K+ EKAVKSLVKKLKK+  LDELEKAITTQ+ 
Sbjct: 1   MSSILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNV 60

Query: 116 NTKCVTIPSARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKR 175
           NTKC+TIP  R+  G   +S+R KGLPHVIYCRLWRWP L SH+ELR+++LC F F++K+
Sbjct: 61  NTKCITIP--RSLDGRLQVSHR-KGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKK 117

Query: 176 DQVCVNPYHYQRIHTQGICTCNVERE--------ELGKMVENLTKNARTDKGSTDLSNRS 227
           D+VCVNPYHYQR+ T  +    V R          L     ++ +N     G    SN  
Sbjct: 118 DEVCVNPYHYQRVETPVLPPVLVPRHTEIPAEFPPLDDYSHSIPENTNFPAGIEPQSNIP 177

Query: 228 KGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHGGYMSEDGD 287
           +  P          P   S +   S                             M+   D
Sbjct: 178 ETPP----------PGYLSEDGETS--------------------------DHQMNHSMD 201

Query: 288 ATDALSLSPSPAIPAG---DTQPVMYCEPVFWCSISYYELNTRVGETFHASQPSISVDGF 344
           A    +LSP+P  PA    D QPV YCEP FWCSISYYELN RVGETFHASQPS++VDGF
Sbjct: 202 AGSP-NLSPNPMSPAHNNLDLQPVTYCEPAFWCSISYYELNQRVGETFHASQPSMTVDGF 260

Query: 345 TDPSNSERFCLGLLSNVNRNHVVEQIRRHIGKG 377
           TDPSNSERFCLGLLSNVNRN  VE  RRHIG+G
Sbjct: 261 TDPSNSERFCLGLLSNVNRNAAVELTRRHIGRG 293
Receptor-regulated SMAD (R-SMAD) that is an intracellular signal transducer and transcriptional modulator activated by TGF-beta (transforming growth factor) and activin type 1 receptor kinases. Binds the TRE element in the promoter region of many genes that are regulated by TGF-beta and, on formation of the SMAD3/SMAD4 complex, activates transcription. Also can form a SMAD3/SMAD4/JUN/FOS complex at the AP-1/SMAD site to regulate TGF-beta-mediated transcription. Has an inhibitory effect on wound healing probably by modulating both growth and migration of primary keratinocytes and by altering the TGF-mediated chemotaxis of monocytes. This effect on wound healing appears to be hormone-sensitive. Regulator of chondrogenesis and osteogenesis and inhibits early healing of bone fractures. Positively regulates PDPK1 kinase activity by stimulating its dissociation from the 14-3-3 protein YWHAQ which acts as a negative regulator.
Rattus norvegicus (taxid: 10116)
>sp|P84024|SMAD3_PIG Mothers against decapentaplegic homolog 3 OS=Sus scrofa GN=SMAD3 PE=2 SV=1 Back     alignment and function description
>sp|Q8BUN5|SMAD3_MOUSE Mothers against decapentaplegic homolog 3 OS=Mus musculus GN=Smad3 PE=1 SV=2 Back     alignment and function description
>sp|P84022|SMAD3_HUMAN Mothers against decapentaplegic homolog 3 OS=Homo sapiens GN=SMAD3 PE=1 SV=1 Back     alignment and function description
>sp|P84023|SMAD3_CHICK Mothers against decapentaplegic homolog 3 OS=Gallus gallus GN=SMAD3 PE=2 SV=1 Back     alignment and function description
>sp|Q9I9P9|SMAD2_DANRE Mothers against decapentaplegic homolog 2 OS=Danio rerio GN=smad2 PE=2 SV=1 Back     alignment and function description
>sp|O70436|SMAD2_RAT Mothers against decapentaplegic homolog 2 OS=Rattus norvegicus GN=Smad2 PE=2 SV=1 Back     alignment and function description
>sp|Q15796|SMAD2_HUMAN Mothers against decapentaplegic homolog 2 OS=Homo sapiens GN=SMAD2 PE=1 SV=1 Back     alignment and function description
>sp|Q62432|SMAD2_MOUSE Mothers against decapentaplegic homolog 2 OS=Mus musculus GN=Smad2 PE=1 SV=2 Back     alignment and function description
>sp|Q1W668|SMAD2_BOVIN Mothers against decapentaplegic homolog 2 OS=Bos taurus GN=SMAD2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query430
269785013420 Smad2/3 transcription factor [Saccogloss 0.639 0.654 0.536 2e-86
260826197425 hypothetical protein BRAFLDRAFT_278811 [ 0.679 0.687 0.568 8e-86
242004343418 smad, putative [Pediculus humanus corpor 0.667 0.686 0.584 1e-82
432861628425 PREDICTED: mothers against decapentapleg 0.641 0.649 0.525 1e-81
321473505400 hypothetical protein DAPPUDRAFT_314805 [ 0.609 0.655 0.56 4e-81
348505900425 PREDICTED: mothers against decapentapleg 0.641 0.649 0.525 4e-80
399932273423 Smad3 [Tegillarca granosa] 0.655 0.666 0.542 4e-78
47059195425 MAD homolog 3a [Danio rerio] gi|23092507 0.641 0.649 0.531 7e-78
2351035435 Smad 3 [Homo sapiens] 0.665 0.657 0.523 8e-78
161110488413 TFG beta signaling pathway factor [Pinct 0.634 0.661 0.547 2e-77
>gi|269785013|ref|NP_001161658.1| Smad2/3 transcription factor [Saccoglossus kowalevskii] gi|268054327|gb|ACY92650.1| Smad2/3 transcription factor [Saccoglossus kowalevskii] Back     alignment and taxonomy information
 Score =  326 bits (835), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 178/332 (53%), Positives = 215/332 (64%), Gaps = 57/332 (17%)

Query: 59  MTSLFPFTPPIVKKLLGWKKGDGEDKYSEKAVKSLVKKLKKSNGLDELEKAITTQDPNTK 118
           M+S+ PFTPPIVK+LLGWKKGD EDK+SEKAVKSLVK+LKK+  LDELEK+I+ QD +TK
Sbjct: 1   MSSMLPFTPPIVKRLLGWKKGDSEDKWSEKAVKSLVKRLKKTGSLDELEKSISNQDASTK 60

Query: 119 CVTIPSARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQV 178
           CVTIP  R+  G   +S+R KGLPHVIYCRLWRWP LQSH+ELR+ID C F F+LKRD+V
Sbjct: 61  CVTIP--RSLDGRLQVSHR-KGLPHVIYCRLWRWPDLQSHHELRAIDSCEFAFNLKRDEV 117

Query: 179 CVNPYHYQRIHTQGICTCNVEREELGKMVENLTKNARTDKGSTDLSNRSKGLPHVIYCRL 238
           CVNPYHY+R+ T  +    V R+         T +  TD    D  + S  +P       
Sbjct: 118 CVNPYHYERVETPVLPPVLVPRQ---------TGDIPTDFPPLD--DYSTSIPENT---- 162

Query: 239 WRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHGGYMSEDGDATDA------- 291
                                F +  +   + P   +    GYMSEDGD  D        
Sbjct: 163 --------------------NFPVGVEAQSILP---ETPPPGYMSEDGDNQDQSMDTSTP 199

Query: 292 ------LSLSPSPAIPAGDTQPVMYCEPVFWCSISYYELNTRVGETFHASQPSISVDGFT 345
                  + SP+P++   D QPV YCEP FWCSI+YYE+NTRVGETFHASQPS++VDGFT
Sbjct: 200 GGNGADAAASPNPSL---DVQPVPYCEPPFWCSIAYYEMNTRVGETFHASQPSLTVDGFT 256

Query: 346 DPSNSERFCLGLLSNVNRNHVVEQIRRHIGKG 377
           DPSNSERFCLGLLSN+NRN  +E  RRHIGKG
Sbjct: 257 DPSNSERFCLGLLSNINRNQTIELTRRHIGKG 288

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Order:

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota
>gi|260826197|ref|XP_002608052.1| hypothetical protein BRAFLDRAFT_278811 [Branchiostoma floridae] gi|229293402|gb|EEN64062.1| hypothetical protein BRAFLDRAFT_278811 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|242004343|ref|XP_002423056.1| smad, putative [Pediculus humanus corporis] gi|212505987|gb|EEB10318.1| smad, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|432861628|ref|XP_004069659.1| PREDICTED: mothers against decapentaplegic homolog 3-like isoform 1 [Oryzias latipes] Back     alignment and taxonomy information
>gi|321473505|gb|EFX84472.1| hypothetical protein DAPPUDRAFT_314805 [Daphnia pulex] Back     alignment and taxonomy information
>gi|348505900|ref|XP_003440498.1| PREDICTED: mothers against decapentaplegic homolog 3-like isoform 1 [Oreochromis niloticus] Back     alignment and taxonomy information
>gi|399932273|gb|AFP57672.1| Smad3 [Tegillarca granosa] Back     alignment and taxonomy information
>gi|47059195|ref|NP_571646.1| MAD homolog 3a [Danio rerio] gi|23092507|gb|AAN08606.1| Smad3a [Danio rerio] gi|120537589|gb|AAI29151.1| MAD homolog 3a (Drosophila) [Danio rerio] Back     alignment and taxonomy information
>gi|2351035|dbj|BAA22032.1| Smad 3 [Homo sapiens] Back     alignment and taxonomy information
>gi|161110488|gb|ABX57736.1| TFG beta signaling pathway factor [Pinctada fucata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query430
ZFIN|ZDB-GENE-000509-3425 smad3a "MAD homolog 3a (Drosop 0.295 0.298 0.639 2.8e-80
UNIPROTKB|F1PSQ3425 SMAD2 "Uncharacterized protein 0.3 0.303 0.614 1.2e-79
UNIPROTKB|P84022425 SMAD3 "Mothers against decapen 0.3 0.303 0.614 1.2e-79
UNIPROTKB|P84024425 SMAD3 "Mothers against decapen 0.3 0.303 0.614 1.2e-79
MGI|MGI:1201674425 Smad3 "SMAD family member 3" [ 0.3 0.303 0.614 1.2e-79
RGD|3032425 Smad3 "SMAD family member 3" [ 0.3 0.303 0.614 1.2e-79
UNIPROTKB|P84023426 SMAD3 "Mothers against decapen 0.3 0.302 0.6 5.2e-79
ZFIN|ZDB-GENE-030128-4423 smad3b "MAD, mothers against d 0.295 0.300 0.601 2e-77
ZFIN|ZDB-GENE-990603-7483 smad2 "MAD homolog 2 (Drosophi 0.227 0.202 0.660 3.8e-75
RGD|3031467 Smad2 "SMAD family member 2" [ 0.227 0.209 0.642 2.1e-74
ZFIN|ZDB-GENE-000509-3 smad3a "MAD homolog 3a (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
 Score = 444 (161.4 bits), Expect = 2.8e-80, Sum P(2) = 2.8e-80
 Identities = 85/133 (63%), Positives = 101/133 (75%)

Query:    61 SLFPFTPPIVKKLLGWKKGD--G-EDKYSEKAXXXXXXXXXXXNGLDELEKAITTQDPNT 117
             S+ PFTPPIVK+LLGWKKG+  G E+K+ EKA             LDELEKAITTQD NT
Sbjct:     2 SILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQDVNT 61

Query:   118 KCVTIPSARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQ 177
             KC+TIP  R+  G   +S+R KGLPHVIYCRLWRWP LQSH+ELR+I+LC F F +K+D+
Sbjct:    62 KCITIP--RSLDGRLQVSHR-KGLPHVIYCRLWRWPDLQSHHELRAIELCEFAFHMKKDE 118

Query:   178 VCVNPYHYQRIHT 190
             VCVNPYHYQR+ T
Sbjct:   119 VCVNPYHYQRVET 131
GO:0005622 "intracellular" evidence=IEA
GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IPI
GO:0007179 "transforming growth factor beta receptor signaling pathway" evidence=IEA
GO:0005667 "transcription factor complex" evidence=IEA
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IEA
GO:0006351 "transcription, DNA-dependent" evidence=IEA
GO:0043565 "sequence-specific DNA binding" evidence=IPI
UNIPROTKB|F1PSQ3 SMAD2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P84022 SMAD3 "Mothers against decapentaplegic homolog 3" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P84024 SMAD3 "Mothers against decapentaplegic homolog 3" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1201674 Smad3 "SMAD family member 3" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|3032 Smad3 "SMAD family member 3" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P84023 SMAD3 "Mothers against decapentaplegic homolog 3" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030128-4 smad3b "MAD, mothers against decapentaplegic homolog 3b (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990603-7 smad2 "MAD homolog 2 (Drosophila)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
RGD|3031 Smad2 "SMAD family member 2" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q8BUN5SMAD3_MOUSENo assigned EC number0.52550.64880.6564yesN/A
P84023SMAD3_CHICKNo assigned EC number0.51950.65110.6572yesN/A
Q02330SMA2_CAEELNo assigned EC number0.34980.62320.6411yesN/A
P84024SMAD3_PIGNo assigned EC number0.52550.64880.6564yesN/A
P84025SMAD3_RATNo assigned EC number0.52550.64880.6564yesN/A
P84022SMAD3_HUMANNo assigned EC number0.52550.64880.6564yesN/A
P42003MAD_DROMENo assigned EC number0.45280.69060.6527yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
cd10491124 cd10491, MH1_SMAD_2_3, N-terminal Mad Homology 1 ( 3e-69
cd10488123 cd10488, MH1_R-SMAD, N-terminal Mad Homology 1 (MH 6e-55
cd10490124 cd10490, MH1_SMAD_1_5_9, N-terminal Mad Homology 1 6e-54
cd00049121 cd00049, MH1, N-terminal Mad Homology 1 (MH1) doma 5e-48
cd10985191 cd10985, MH2_SMAD_2_3, C-terminal Mad Homology 2 ( 2e-43
pfam03165103 pfam03165, MH1, MH1 domain 4e-39
smart00523109 smart00523, DWA, Domain A in dwarfin family protei 2e-36
cd10492125 cd10492, MH1_SMAD_4, N-terminal Mad Homology 1 (MH 1e-34
cd10495182 cd10495, MH2_R-SMAD, C-terminal Mad Homology 2 (MH 1e-33
pfam03166179 pfam03166, MH2, MH2 domain 4e-33
cd10497201 cd10497, MH2_SMAD_1_5_9, C-terminal Mad Homology 2 3e-32
smart00524171 smart00524, DWB, Domain B in dwarfin family protei 5e-31
cd10491124 cd10491, MH1_SMAD_2_3, N-terminal Mad Homology 1 ( 3e-29
cd00050170 cd00050, MH2, C-terminal Mad Homology 2 (MH2) doma 3e-28
cd10488123 cd10488, MH1_R-SMAD, N-terminal Mad Homology 1 (MH 6e-26
cd10985191 cd10985, MH2_SMAD_2_3, C-terminal Mad Homology 2 ( 6e-26
cd10498 222 cd10498, MH2_SMAD_4, C-terminal Mad Homology 2 (MH 3e-25
cd10490124 cd10490, MH1_SMAD_1_5_9, N-terminal Mad Homology 1 4e-25
pfam03165103 pfam03165, MH1, MH1 domain 4e-24
cd00049121 cd00049, MH1, N-terminal Mad Homology 1 (MH1) doma 9e-24
smart00523109 smart00523, DWA, Domain A in dwarfin family protei 4e-22
cd10492125 cd10492, MH1_SMAD_4, N-terminal Mad Homology 1 (MH 2e-21
cd10495182 cd10495, MH2_R-SMAD, C-terminal Mad Homology 2 (MH 7e-21
cd10497201 cd10497, MH2_SMAD_1_5_9, C-terminal Mad Homology 2 2e-19
cd00050170 cd00050, MH2, C-terminal Mad Homology 2 (MH2) doma 1e-14
smart00524171 smart00524, DWB, Domain B in dwarfin family protei 4e-14
pfam03166179 pfam03166, MH2, MH2 domain 4e-13
cd10489119 cd10489, MH1_SMAD_6_7, N-terminal Mad Homology 1 ( 4e-13
cd10496165 cd10496, MH2_I-SMAD, C-terminal Mad Homology 2 (MH 9e-12
cd10493113 cd10493, MH1_SMAD_6, N-terminal Mad Homology 1 (MH 1e-10
cd10489119 cd10489, MH1_SMAD_6_7, N-terminal Mad Homology 1 ( 8e-10
cd10499174 cd10499, MH2_SMAD_6, C-terminal Mad Homology 2 (MH 1e-09
cd10500171 cd10500, MH2_SMAD_7, C-terminal Mad Homology 2 (MH 2e-08
cd10493113 cd10493, MH1_SMAD_6, N-terminal Mad Homology 1 (MH 3e-08
cd10494123 cd10494, MH1_SMAD_7, N-terminal Mad Homology 1 (MH 5e-05
cd10494123 cd10494, MH1_SMAD_7, N-terminal Mad Homology 1 (MH 0.003
>gnl|CDD|199815 cd10491, MH1_SMAD_2_3, N-terminal Mad Homology 1 (MH1) domain in SMAD2 and SMAD3 Back     alignment and domain information 
 Score =  215 bits (548), Expect = 3e-69
 Identities = 90/127 (70%), Positives = 108/127 (85%), Gaps = 5/127 (3%)

Query: 66  TPPIVKKLLGWKKG--DGEDKYSEKAVKSLVKKLKKSNGLDELEKAITTQDPNTKCVTIP 123
           TPP+VK+LLGWKKG    E+K+SEKAVKSLVKKLKK+ GLDELEKAITTQ+ NTKC+TIP
Sbjct: 1   TPPVVKRLLGWKKGENGQEEKWSEKAVKSLVKKLKKTGGLDELEKAITTQNSNTKCITIP 60

Query: 124 SARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPY 183
             R+  G   +S+R KGLPHVIYCRLWRWP LQSH+ELR+I+ C + F+LK+D+VCVNPY
Sbjct: 61  --RSLDGRLQVSHR-KGLPHVIYCRLWRWPDLQSHHELRAIETCEYAFNLKKDEVCVNPY 117

Query: 184 HYQRIHT 190
           HYQR+ T
Sbjct: 118 HYQRVET 124

The MH1 is a small DNA-binding domain present in SMAD (small mothers against decapentaplegic) family of proteins, which are signal transducers and transcriptional modulators that mediate multiple signaling pathways. MH1 binds to the DNA major groove in an unusual manner via a beta hairpin structure. It negatively regulates the functions of the MH2 domain, the C-terminal domain of SMAD. This MH1 is found in SMAD2 as well as SMAD3. SMAD2 mediates the signal of the transforming growth factor (TGF)-beta, and thereby regulates multiple cellular processes, such as cell proliferation, apoptosis, and differentiation. It plays a role in the transmission of extracellular signals from ligands of the TGF-beta superfamily growth factors into the cell nucleus. SMAD3 modulates signals of activin and TGF-beta. It binds SMAD4, enabling its transmigration into the nucleus where it forms complexes with other proteins and acts as a transcription factor. Increased SMAD3 activity has been implicated in the pathogenesis of scleroderma. Length = 124
>gnl|CDD|199812 cd10488, MH1_R-SMAD, N-terminal Mad Homology 1 (MH1) domain of receptor regulated SMADs Back     alignment and domain information
>gnl|CDD|199814 cd10490, MH1_SMAD_1_5_9, N-terminal Mad Homology 1 (MH1) domain in SMAD1, SMAD5 and SMAD9 (also known as SMAD8) Back     alignment and domain information
>gnl|CDD|199811 cd00049, MH1, N-terminal Mad Homology 1 (MH1) domain Back     alignment and domain information
>gnl|CDD|199826 cd10985, MH2_SMAD_2_3, C-terminal Mad Homology 2 (MH2) domain in SMAD2 and SMAD3 Back     alignment and domain information
>gnl|CDD|217397 pfam03165, MH1, MH1 domain Back     alignment and domain information
>gnl|CDD|214708 smart00523, DWA, Domain A in dwarfin family proteins Back     alignment and domain information
>gnl|CDD|199816 cd10492, MH1_SMAD_4, N-terminal Mad Homology 1 (MH1) domain in SMAD4 Back     alignment and domain information
>gnl|CDD|199820 cd10495, MH2_R-SMAD, C-terminal Mad Homology 2 (MH2) domain in receptor regulated SMADs Back     alignment and domain information
>gnl|CDD|217398 pfam03166, MH2, MH2 domain Back     alignment and domain information
>gnl|CDD|199822 cd10497, MH2_SMAD_1_5_9, C-terminal Mad Homology 2 (MH2) domain in SMAD1, SMAD5 and SMAD9 Back     alignment and domain information
>gnl|CDD|197770 smart00524, DWB, Domain B in dwarfin family proteins Back     alignment and domain information
>gnl|CDD|199815 cd10491, MH1_SMAD_2_3, N-terminal Mad Homology 1 (MH1) domain in SMAD2 and SMAD3 Back     alignment and domain information
>gnl|CDD|199819 cd00050, MH2, C-terminal Mad Homology 2 (MH2) domain Back     alignment and domain information
>gnl|CDD|199812 cd10488, MH1_R-SMAD, N-terminal Mad Homology 1 (MH1) domain of receptor regulated SMADs Back     alignment and domain information
>gnl|CDD|199826 cd10985, MH2_SMAD_2_3, C-terminal Mad Homology 2 (MH2) domain in SMAD2 and SMAD3 Back     alignment and domain information
>gnl|CDD|199823 cd10498, MH2_SMAD_4, C-terminal Mad Homology 2 (MH2) domain in SMAD4 Back     alignment and domain information
>gnl|CDD|199814 cd10490, MH1_SMAD_1_5_9, N-terminal Mad Homology 1 (MH1) domain in SMAD1, SMAD5 and SMAD9 (also known as SMAD8) Back     alignment and domain information
>gnl|CDD|217397 pfam03165, MH1, MH1 domain Back     alignment and domain information
>gnl|CDD|199811 cd00049, MH1, N-terminal Mad Homology 1 (MH1) domain Back     alignment and domain information
>gnl|CDD|214708 smart00523, DWA, Domain A in dwarfin family proteins Back     alignment and domain information
>gnl|CDD|199816 cd10492, MH1_SMAD_4, N-terminal Mad Homology 1 (MH1) domain in SMAD4 Back     alignment and domain information
>gnl|CDD|199820 cd10495, MH2_R-SMAD, C-terminal Mad Homology 2 (MH2) domain in receptor regulated SMADs Back     alignment and domain information
>gnl|CDD|199822 cd10497, MH2_SMAD_1_5_9, C-terminal Mad Homology 2 (MH2) domain in SMAD1, SMAD5 and SMAD9 Back     alignment and domain information
>gnl|CDD|199819 cd00050, MH2, C-terminal Mad Homology 2 (MH2) domain Back     alignment and domain information
>gnl|CDD|197770 smart00524, DWB, Domain B in dwarfin family proteins Back     alignment and domain information
>gnl|CDD|217398 pfam03166, MH2, MH2 domain Back     alignment and domain information
>gnl|CDD|199813 cd10489, MH1_SMAD_6_7, N-terminal Mad Homology 1 (MH1) domain in SMAD6 and SMAD7 Back     alignment and domain information
>gnl|CDD|199821 cd10496, MH2_I-SMAD, C-terminal Mad Homology 2 (MH2) domain in Inhibitory SMADs Back     alignment and domain information
>gnl|CDD|199817 cd10493, MH1_SMAD_6, N-terminal Mad Homology 1 (MH1) domain in SMAD6 Back     alignment and domain information
>gnl|CDD|199813 cd10489, MH1_SMAD_6_7, N-terminal Mad Homology 1 (MH1) domain in SMAD6 and SMAD7 Back     alignment and domain information
>gnl|CDD|199824 cd10499, MH2_SMAD_6, C-terminal Mad Homology 2 (MH2) domain in SMAD6 Back     alignment and domain information
>gnl|CDD|199825 cd10500, MH2_SMAD_7, C-terminal Mad Homology 2 (MH2) domain in SMAD7 Back     alignment and domain information
>gnl|CDD|199817 cd10493, MH1_SMAD_6, N-terminal Mad Homology 1 (MH1) domain in SMAD6 Back     alignment and domain information
>gnl|CDD|199818 cd10494, MH1_SMAD_7, N-terminal Mad Homology 1 (MH1) domain in SMAD7 Back     alignment and domain information
>gnl|CDD|199818 cd10494, MH1_SMAD_7, N-terminal Mad Homology 1 (MH1) domain in SMAD7 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 430
KOG3701|consensus411 100.0
cd00049121 MH1 MH1 is a small DNA binding domain, binding in 100.0
smart00523109 DWA Domain A in dwarfin family proteins. 100.0
PF03165103 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwa 100.0
KOG3701|consensus 411 100.0
cd00050176 MH2 MH2 domain; C terminal domain of SMAD family p 99.91
smart00524171 DWB Domain B in dwarfin family proteins. 99.87
PF03166181 MH2: MH2 domain; InterPro: IPR001132 Mammalian dwa 99.8
cd00050176 MH2 MH2 domain; C terminal domain of SMAD family p 99.77
smart00524171 DWB Domain B in dwarfin family proteins. 99.74
smart00523109 DWA Domain A in dwarfin family proteins. 99.61
PF03165103 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwa 99.54
cd00049121 MH1 MH1 is a small DNA binding domain, binding in 99.54
PF03166 181 MH2: MH2 domain; InterPro: IPR001132 Mammalian dwa 99.52
>KOG3701|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.3e-69  Score=549.71  Aligned_cols=325  Identities=43%  Similarity=0.705  Sum_probs=239.3

Q ss_pred             ccccCCCChHHHHHHhhccc-CCCCcchhHHHHHHHHHHhhcc-CCHHHHHHHHhcCC-CCccceEecCCCCCCCCcccC
Q psy13845         59 MTSLFPFTPPIVKKLLGWKK-GDGEDKYSEKAVKSLVKKLKKS-NGLDELEKAITTQD-PNTKCVTIPSARTDKGSTDLS  135 (430)
Q Consensus        59 ~~~~~~~~~~~v~~ll~~~~-g~~~~~~~~ka~~~l~Kklk~~-~~le~L~~Av~~~~-~~t~Cv~i~~~r~~dgrl~~~  135 (430)
                      ++++++|+.|+|++||+||| |+++|+|++||+++|||||||+ ++||+|++||++++ .+++|||||  |++|||||++
T Consensus         1 ~~~~~~~~~p~v~~~~~~r~~~~~~e~~~~ka~~slvkklk~~~~~le~l~~av~s~g~~~~~Cvtip--rslD~Rlq~~   78 (411)
T KOG3701|consen    1 TSSLLPFTGPAVKDLLGPRQLGGEDEKFAEKAVESLVKKLKDKKGELENLIKAVESPGTKPTGCVTIP--RSLDGRLQVA   78 (411)
T ss_pred             CCcccCCCCcchhhccCccccCchhHHHHHHHHHHHHHHhhcccchHHHHHHHhcCCCCCCCceEECC--CCCCcccccc
Confidence            35789999999999999999 9999999999999999999997 67999999999995 569999999  9999999999


Q ss_pred             CCCCCCCceEeeeeecCCCCCCCcccccccccccccCCCCCeeecCccchhceeec-Ccccccccccccccccccccccc
Q psy13845        136 NRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHTQ-GICTCNVEREELGKMVENLTKNA  214 (430)
Q Consensus       136 ~~~k~~Phv~~crl~RwpdL~~~~eLk~l~~C~~~~~~~~~~vC~NPyHy~rv~~p-~~pp~~v~~~~l~e~~~~~~~~~  214 (430)
                      +| |++|||||||||||||||+++|||++++|+++|+++.++||||||||+||+.| ..+|.++.+..  +.......  
T Consensus        79 ~r-kg~Phviy~rlwRwpdl~~~~elk~l~~C~~a~~~~~~~vC~NPyHy~rv~~~~~~~~~~~~~~~--~~~~~~~~--  153 (411)
T KOG3701|consen   79 HR-KGFPHVIYCRLWRWPDLQKNHELKRLECCEHAFESKSDNVCINPYHYSRVESPPILPPPLSPNSP--PNDALKTL--  153 (411)
T ss_pred             CC-CCCCceEEEEeecccccccchhheecccCCccccCCCCCeeeCCcccceeecCCCCCcccCCCCC--ccccccch--
Confidence            99 99999999999999999999999999999999999999999999999999999 56666666532  11111100  


Q ss_pred             cCCCCCCccCCCCCCCCcccccccccCCCccCCCccccccccccCccCCCCccccCCCCCCCCCCCCCCCCCCCCCCCCC
Q psy13845        215 RTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHGGYMSEDGDATDALSL  294 (430)
Q Consensus       215 rs~dg~~~l~~~~k~lPhvi~cRLwRWPDLqs~~eLk~l~~C~~~~~~~~~~vc~NPyhyesppP~y~s~~~~~~~~~~~  294 (430)
                       .+++...+ . ...+|++...     +++...           .+       ..+|-....+.|  ....++..+...+
T Consensus       154 -~~~~~~~~-~-~~~~P~n~~~-----~~~~~~-----------~~-------~~tp~~~~~~~P--~~~~~p~s~~~~~  205 (411)
T KOG3701|consen  154 -LDDGGVDI-V-NRSMPQNNHS-----SDLIGP-----------HA-------PHTPDSSQIPAP--LGDGGPSSDSSAL  205 (411)
T ss_pred             -hhcccccc-c-ccCCCccccc-----cccccc-----------CC-------CCCCCcccCCCC--CCCCCCCCccccc
Confidence             11111111 1 1234444332     111000           00       000000011111  0000111110000


Q ss_pred             CCCCCCCCCCCCCccccCCCccccccccccccccccccccCCCccccCCccCCCCCcccccccccCcccchhHhhhhccc
Q psy13845        295 SPSPAIPAGDTQPVMYCEPVFWCSISYYELNTRVGETFHASQPSISVDGFTDPSNSERFCLGLLSNVNRNHVVEQIRRHI  374 (430)
Q Consensus       295 ~p~~~~~~~~~~pv~y~eP~~WCSIaY~El~~rVGe~F~vs~psV~VDGftDPS~~~rfCLg~lsnvnR~~~vE~tR~~I  374 (430)
                      .+. +....+..|+.|+++++||+|+|||+++||||+|++..++++||||+|||+++|||||+++|+||++++|++|+||
T Consensus       206 ~~~-P~~~P~~~~~~~~~~~~WcsIaYyEl~~rVGE~f~v~~~~~~vDG~~dps~~~rfcLgqlsn~~Rn~~~e~~R~~I  284 (411)
T KOG3701|consen  206 PGL-PTDSPDVGPVHYEEPKSWCSIAYYELNTRVGETFHVPGPSITVDGFTDPSNGSRFCLGQLSNVNRNEKVEKTRAHI  284 (411)
T ss_pred             CCC-CCCCCccCcccccCCcceeEEEEeeccccccceEEecCCceEEeeeecCCCCCceeeccccCCCccchhHHHHhhc
Confidence            000 1001144557899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceeeeecccCC-----CCCCceEeecccCCCCchhHHHhhhccCCceEE
Q psy13845        375 GKGPSISVDGFTDP-----SNSERFCLGLLSNVNRNHVVEQIRRHIGKGVRS  421 (430)
Q Consensus       375 GkGvsL~vdGftDp-----~~~~~fcLg~l~n~~r~~~v~~tR~~iG~Gv~L  421 (430)
                      |+||+|++.+ +|+     ++...|..+--.|-.-..+- .|+++|=.|=.|
T Consensus       285 G~GV~L~~~~-gdVw~~n~sd~pIFVqS~~ln~~~g~~~-~~v~ki~Pg~~i  334 (411)
T KOG3701|consen  285 GKGVQLSYEN-GDVWLYNLSDYPIFVQSPNLNYPNGRTL-DTVHKVPPGYSI  334 (411)
T ss_pred             cCceeeeEec-CcEEEEecCCCceeeeCCCCcCCCCCcc-cceEeeCCCcee
Confidence            9999999999 776     45556877765554433444 666666555433

>cd00049 MH1 MH1 is a small DNA binding domain, binding in an unusal way involving a beta hairpin structure binding to the major groove Back     alignment and domain information
>smart00523 DWA Domain A in dwarfin family proteins Back     alignment and domain information
>PF03165 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth [] Back     alignment and domain information
>KOG3701|consensus Back     alignment and domain information
>cd00050 MH2 MH2 domain; C terminal domain of SMAD family proteins, responsible for receptor interaction, transactivation, and homo- and heterooligomerisation; also known as Domain B in dwarfin family proteins Back     alignment and domain information
>smart00524 DWB Domain B in dwarfin family proteins Back     alignment and domain information
>PF03166 MH2: MH2 domain; InterPro: IPR001132 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth [] Back     alignment and domain information
>cd00050 MH2 MH2 domain; C terminal domain of SMAD family proteins, responsible for receptor interaction, transactivation, and homo- and heterooligomerisation; also known as Domain B in dwarfin family proteins Back     alignment and domain information
>smart00524 DWB Domain B in dwarfin family proteins Back     alignment and domain information
>smart00523 DWA Domain A in dwarfin family proteins Back     alignment and domain information
>PF03165 MH1: MH1 domain; InterPro: IPR003619 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth [] Back     alignment and domain information
>cd00049 MH1 MH1 is a small DNA binding domain, binding in an unusal way involving a beta hairpin structure binding to the major groove Back     alignment and domain information
>PF03166 MH2: MH2 domain; InterPro: IPR001132 Mammalian dwarfins are phosphorylated in response to transforming growth factor beta and are implicated in control of cell growth [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
1mhd_A132 Crystal Structure Of A Smad Mh1 Domain Bound To Dna 1e-42
1mhd_A132 Crystal Structure Of A Smad Mh1 Domain Bound To Dna 6e-21
1ozj_A144 Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 2e-42
1ozj_A144 Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 6e-21
1mk2_A206 Smad3 Sbd Complex Length = 206 4e-33
1khx_A227 Crystal Structure Of A Phosphorylated Smad2 Length 9e-33
1dev_A196 Crystal Structure Of Smad2 Mh2 Domain Bound To The 5e-32
3kmp_A124 Crystal Structure Of Smad1-Mh1DNA COMPLEX Length = 4e-31
3kmp_A124 Crystal Structure Of Smad1-Mh1DNA COMPLEX Length = 2e-17
1u7f_A198 Crystal Structure Of The Phosphorylated Smad3SMAD4 5e-29
1u7v_A198 Crystal Structure Of The Phosphorylated Smad2SMAD4 5e-29
1mjs_A197 Mh2 Domain Of Transcriptional Factor Smad3 Length = 2e-28
1khu_A218 Smad1 Crystal Structure Reveals The Details Of Bmp 7e-26
3gmj_D245 Crystal Structure Of Mad Mh2 Domain Length = 245 5e-23
3dit_A188 Crystal Structure Of Mad Mh2 Domain Length = 188 6e-19
1mr1_A 235 Crystal Structure Of A Smad4-Ski Complex Length = 2 2e-17
1ygs_A 234 Crystal Structure Of The Smad4 Tumor Suppressor C-T 2e-17
1u7f_B 239 Crystal Structure Of The Phosphorylated Smad3SMAD4 2e-17
1u7v_B 236 Crystal Structure Of The Phosphorylated Smad2SMAD4 2e-17
1dd1_A 268 Crystal Structure Analysis Of The Smad4 Active Frag 2e-17
1g88_A 268 S4afl3arg515 Mutant Length = 268 3e-17
3qsv_A132 Structural Basis For Dna Recognition By Constitutiv 3e-17
3qsv_A132 Structural Basis For Dna Recognition By Constitutiv 1e-14
>pdb|1MHD|A Chain A, Crystal Structure Of A Smad Mh1 Domain Bound To Dna Length = 132 Back     alignment and structure 
Iteration: 1

 Score =  170 bits (430), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/135 (60%), Positives = 102/135 (75%), Gaps = 6/135 (4%)
Query: 59  MTSLFPFTPPIVKKLLGWKKGDG---EDKYSEKAXXXXXXXXXXXNGLDELEKAITTQDP 115
           M+S+ PFTPPIVK+LLGWKKG+    E+K+ EKA             LDELEKAITTQ+ 
Sbjct: 1   MSSILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNV 60
Query: 116 NTKCVTIPSARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKR 175
           NTKC+TIP  R+  G   +S+R KGLPHVIYCRLWRWP L SH+ELR+++LC F F++K+
Sbjct: 61  NTKCITIP--RSLDGRLQVSHR-KGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKK 117
Query: 176 DQVCVNPYHYQRIHT 190
           D+VCVNPYHYQR+ T
Sbjct: 118 DEVCVNPYHYQRVET 132
>pdb|1MHD|A Chain A, Crystal Structure Of A Smad Mh1 Domain Bound To Dna Length = 132 Back     alignment and structure
>pdb|1OZJ|A Chain A, Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 A Resolution Length = 144 Back     alignment and structure
>pdb|1OZJ|A Chain A, Crystal Structure Of Smad3-mh1 Bound To Dna At 2.4 A Resolution Length = 144 Back     alignment and structure
>pdb|1MK2|A Chain A, Smad3 Sbd Complex Length = 206 Back     alignment and structure
>pdb|1KHX|A Chain A, Crystal Structure Of A Phosphorylated Smad2 Length = 227 Back     alignment and structure
>pdb|1DEV|A Chain A, Crystal Structure Of Smad2 Mh2 Domain Bound To The Smad- Binding Domain Of Sara Length = 196 Back     alignment and structure
>pdb|3KMP|A Chain A, Crystal Structure Of Smad1-Mh1DNA COMPLEX Length = 124 Back     alignment and structure
>pdb|3KMP|A Chain A, Crystal Structure Of Smad1-Mh1DNA COMPLEX Length = 124 Back     alignment and structure
>pdb|1U7F|A Chain A, Crystal Structure Of The Phosphorylated Smad3SMAD4 Heterotrimeric Complex Length = 198 Back     alignment and structure
>pdb|1U7V|A Chain A, Crystal Structure Of The Phosphorylated Smad2SMAD4 Heterotrimeric Complex Length = 198 Back     alignment and structure
>pdb|1MJS|A Chain A, Mh2 Domain Of Transcriptional Factor Smad3 Length = 197 Back     alignment and structure
>pdb|1KHU|A Chain A, Smad1 Crystal Structure Reveals The Details Of Bmp Signaling Pathway Length = 218 Back     alignment and structure
>pdb|3GMJ|D Chain D, Crystal Structure Of Mad Mh2 Domain Length = 245 Back     alignment and structure
>pdb|3DIT|A Chain A, Crystal Structure Of Mad Mh2 Domain Length = 188 Back     alignment and structure
>pdb|1MR1|A Chain A, Crystal Structure Of A Smad4-Ski Complex Length = 235 Back     alignment and structure
>pdb|1YGS|A Chain A, Crystal Structure Of The Smad4 Tumor Suppressor C-Terminal Domain Length = 234 Back     alignment and structure
>pdb|1U7F|B Chain B, Crystal Structure Of The Phosphorylated Smad3SMAD4 Heterotrimeric Complex Length = 239 Back     alignment and structure
>pdb|1U7V|B Chain B, Crystal Structure Of The Phosphorylated Smad2SMAD4 Heterotrimeric Complex Length = 236 Back     alignment and structure
>pdb|1DD1|A Chain A, Crystal Structure Analysis Of The Smad4 Active Fragment Length = 268 Back     alignment and structure
>pdb|1G88|A Chain A, S4afl3arg515 Mutant Length = 268 Back     alignment and structure
>pdb|3QSV|A Chain A, Structural Basis For Dna Recognition By Constitutive Smad4 Mh1 Dimers Length = 132 Back     alignment and structure
>pdb|3QSV|A Chain A, Structural Basis For Dna Recognition By Constitutive Smad4 Mh1 Dimers Length = 132 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
1ozj_A144 SMAD 3; MAD homology domain 1, DNA recognition, TG 8e-57
1ozj_A144 SMAD 3; MAD homology domain 1, DNA recognition, TG 2e-23
3kmp_A124 SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH 2e-54
3kmp_A124 SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH 4e-24
3qsv_A132 SMAD4, mothers against decapentaplegic homolog 4; 3e-47
3qsv_A132 SMAD4, mothers against decapentaplegic homolog 4; 7e-22
1khx_A227 SMAD2; TGF-beta signaling, phosphorylation, recept 3e-31
1khx_A227 SMAD2; TGF-beta signaling, phosphorylation, recept 9e-14
3gmj_D245 Protein mothers against DPP; MH2,SMAD,MAD, cytopla 2e-29
3gmj_D245 Protein mothers against DPP; MH2,SMAD,MAD, cytopla 4e-13
1dd1_A 268 SMAD4; B-sheet sandwich helix-turn-helix, signalin 3e-27
1dd1_A268 SMAD4; B-sheet sandwich helix-turn-helix, signalin 7e-11
1ygs_A 234 SMAD4; tumor suppressor C-terminal domain, TGF-bet 4e-24
1ygs_A234 SMAD4; tumor suppressor C-terminal domain, TGF-bet 5e-11
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A* Length = 144 Back     alignment and structure
 Score =  183 bits (465), Expect = 8e-57
 Identities = 88/135 (65%), Positives = 109/135 (80%), Gaps = 6/135 (4%)

Query: 59  MTSLFPFTPPIVKKLLGWKKGDG---EDKYSEKAVKSLVKKLKKSNGLDELEKAITTQDP 115
           M+S+ PFTPPIVK+LLGWKKG+    E+K+ EKAVKSLVKKLKK+  LDELEKAITTQ+ 
Sbjct: 1   MSSILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNV 60

Query: 116 NTKCVTIPSARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKR 175
           NTKC+TIP +   +      +  KGLPHVIYCRLWRWP L SH+ELR+++LC F F++K+
Sbjct: 61  NTKCITIPRSLDGRLQ---VSHRKGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKK 117

Query: 176 DQVCVNPYHYQRIHT 190
           D+VCVNPYHYQR+ T
Sbjct: 118 DEVCVNPYHYQRVET 132
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A* Length = 144 Back     alignment and structure
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} Length = 124 Back     alignment and structure
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} Length = 124 Back     alignment and structure
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus} Length = 132 Back     alignment and structure
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus} Length = 132 Back     alignment and structure
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A Length = 227 Back     alignment and structure
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A Length = 227 Back     alignment and structure
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster} Length = 245 Back     alignment and structure
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster} Length = 245 Back     alignment and structure
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A Length = 268 Back     alignment and structure
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A Length = 268 Back     alignment and structure
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B* Length = 234 Back     alignment and structure
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B* Length = 234 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query430
1ozj_A144 SMAD 3; MAD homology domain 1, DNA recognition, TG 100.0
3qsv_A132 SMAD4, mothers against decapentaplegic homolog 4; 100.0
3kmp_A124 SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH 100.0
3gmj_D245 Protein mothers against DPP; MH2,SMAD,MAD, cytopla 99.94
1khx_A227 SMAD2; TGF-beta signaling, phosphorylation, recept 99.89
1dd1_A 268 SMAD4; B-sheet sandwich helix-turn-helix, signalin 99.87
1ygs_A 234 SMAD4; tumor suppressor C-terminal domain, TGF-bet 99.86
3gmj_D 245 Protein mothers against DPP; MH2,SMAD,MAD, cytopla 99.73
1khx_A 227 SMAD2; TGF-beta signaling, phosphorylation, recept 99.69
1ygs_A 234 SMAD4; tumor suppressor C-terminal domain, TGF-bet 99.69
1dd1_A 268 SMAD4; B-sheet sandwich helix-turn-helix, signalin 99.67
1ozj_A144 SMAD 3; MAD homology domain 1, DNA recognition, TG 99.67
3qsv_A132 SMAD4, mothers against decapentaplegic homolog 4; 99.6
3kmp_A124 SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH 99.55
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A* Back     alignment and structure
Probab=100.00  E-value=2.7e-60  Score=420.79  Aligned_cols=140  Identities=67%  Similarity=1.194  Sum_probs=119.8

Q ss_pred             ccccCCCChHHHHHHhhcccCC---CCcchhHHHHHHHHHHhhccCCHHHHHHHHhcCCCCccceEecCCCCCCCCcccC
Q psy13845         59 MTSLFPFTPPIVKKLLGWKKGD---GEDKYSEKAVKSLVKKLKKSNGLDELEKAITTQDPNTKCVTIPSARTDKGSTDLS  135 (430)
Q Consensus        59 ~~~~~~~~~~~v~~ll~~~~g~---~~~~~~~ka~~~l~Kklk~~~~le~L~~Av~~~~~~t~Cv~i~~~r~~dgrl~~~  135 (430)
                      |++||+|++++||||||||||+   +||+|++|||++|+|||||+++||+|++||++++.+|+||+||  |++||||||+
T Consensus         1 ~~~~~~~~~~~v~~ll~~~~~~~~~~~e~~~~kai~sLvKkLK~~~~Le~L~~AV~s~g~~t~CV~ip--rsldgRlqv~   78 (144)
T 1ozj_A            1 MSSILPFTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIP--RSLDGRLQVS   78 (144)
T ss_dssp             ------CCCHHHHHHHTSCCCSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHCCTTSCCCEEE--CCTTSCEEET
T ss_pred             CCccccCCcHHHHHHHhhhccCCCcchHHHHHHHHHHHHHHhcccccHHHHHHHHhCCCCCCCeEEcc--cCCCcccccc
Confidence            6789999999999999999766   8999999999999999998679999999999998789999999  9999999999


Q ss_pred             CCCCCCCceEeeeeecCCCCCCCcccccccccccccCCCCCeeecCccchhceeecCccccccccc
Q psy13845        136 NRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHTQGICTCNVERE  201 (430)
Q Consensus       136 ~~~k~~Phv~~crl~RwpdL~~~~eLk~l~~C~~~~~~~~~~vC~NPyHy~rv~~p~~pp~~v~~~  201 (430)
                      +| |++|||||||||||||||+++|||++++|+|+|+++.++||||||||+||+.|++|||+|||+
T Consensus        79 ~r-k~~PHVi~cRlwRWPDL~~~~ELk~l~~C~~~~~~~~~~VC~NPYHY~Rv~~p~~pPvlvp~~  143 (144)
T 1ozj_A           79 HR-KGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPYHYQRVETPVLPPVLVPRH  143 (144)
T ss_dssp             TE-EECHHHHHHHHHTCTTCCSGGGEEECTTCTTCGGGCCSEEECCGGGEEECCC-----------
T ss_pred             Cc-cCCCeeEEEEeeeCccCCCHhhccccccCCCchhcCCCeEEeCcchhhhhccCCCCCccCCCC
Confidence            99 999999999999999999999999999999999999999999999999999999999999984
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus} Back     alignment and structure
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1 Back     alignment and structure
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster} Back     alignment and structure
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A Back     alignment and structure
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A Back     alignment and structure
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B* Back     alignment and structure
>3gmj_D Protein mothers against DPP; MH2,SMAD,MAD, cytoplasm, developmental protein, nucleus, phosphoprotein, transcription; 2.80A {Drosophila melanogaster} Back     alignment and structure
>1khx_A SMAD2; TGF-beta signaling, phosphorylation, receptor kinase signaling, cancer, transcription; HET: SEP; 1.80A {Homo sapiens} SCOP: b.26.1.1 PDB: 1mk2_A 1u7v_A* 1dev_A 1u7f_A* 1mjs_A 1khu_A 3dit_A Back     alignment and structure
>1ygs_A SMAD4; tumor suppressor C-terminal domain, TGF-beta signal mediator, beta-sandwich scaffold with A three-helix bundle, tumour suppressor; 2.10A {Homo sapiens} SCOP: b.26.1.1 PDB: 1u7f_B* 1mr1_A 1u7v_B* Back     alignment and structure
>1dd1_A SMAD4; B-sheet sandwich helix-turn-helix, signaling protein; 2.62A {Homo sapiens} SCOP: b.26.1.1 PDB: 1g88_A Back     alignment and structure
>1ozj_A SMAD 3; MAD homology domain 1, DNA recognition, TGF-beta signaling, zinc-binding module, transcription/DNA complex; 2.40A {Homo sapiens} SCOP: d.164.1.1 PDB: 1mhd_A* Back     alignment and structure
>3qsv_A SMAD4, mothers against decapentaplegic homolog 4; MH1, transcription factor, DNA binding; HET: DNA; 2.71A {Mus musculus} Back     alignment and structure
>3kmp_A SMAD1-MH1; protein-DNA complex, SMAD1, SBE DNA, MH1 domain, beta hairpin, nucleus, transcription; 2.70A {Mus musculus} SCOP: d.164.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 430
d1ozja_126 d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapien 7e-58
d1ozja_126 d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapien 2e-25
d1mjsa_190 b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapien 3e-31
d1mjsa_190 b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapien 2e-15
d1ygsa_ 225 b.26.1.1 (A:) Smad4 tumor suppressor C-terminal do 3e-30
d1ygsa_225 b.26.1.1 (A:) Smad4 tumor suppressor C-terminal do 2e-11
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: SMAD MH1 domain
superfamily: SMAD MH1 domain
family: SMAD MH1 domain
domain: SMAD MH1 domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  183 bits (467), Expect = 7e-58
 Identities = 89/129 (68%), Positives = 108/129 (83%), Gaps = 6/129 (4%)

Query: 65  FTPPIVKKLLGWKKGDG---EDKYSEKAVKSLVKKLKKSNGLDELEKAITTQDPNTKCVT 121
           FTPPIVK+LLGWKKG+    E+K+ EKAVKSLVKKLKK+  LDELEKAITTQ+ NTKC+T
Sbjct: 1   FTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCIT 60

Query: 122 IPSARTDKGSTDLSNRSKGLPHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVN 181
           IP  R+  G   +S+R KGLPHVIYCRLWRWP L SH+ELR+++LC F F++K+D+VCVN
Sbjct: 61  IP--RSLDGRLQVSHR-KGLPHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVN 117

Query: 182 PYHYQRIHT 190
           PYHYQR+ T
Sbjct: 118 PYHYQRVET 126
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 126 Back     information, alignment and structure
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Back     information, alignment and structure
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 9606]} Length = 190 Back     information, alignment and structure
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 225 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query430
d1ozja_126 SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606 100.0
d1mjsa_190 Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 960 99.88
d1ygsa_225 Smad4 tumor suppressor C-terminal domain {Human (H 99.88
d1ygsa_ 225 Smad4 tumor suppressor C-terminal domain {Human (H 99.74
d1mjsa_ 190 Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 960 99.71
d1ozja_126 SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606 99.64
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: SMAD MH1 domain
superfamily: SMAD MH1 domain
family: SMAD MH1 domain
domain: SMAD MH1 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.6e-55  Score=377.31  Aligned_cols=123  Identities=72%  Similarity=1.301  Sum_probs=119.8

Q ss_pred             CChHHHHHHhhcccCC---CCcchhHHHHHHHHHHhhccCCHHHHHHHHhcCCCCccceEecCCCCCCCCcccCCCCCCC
Q psy13845         65 FTPPIVKKLLGWKKGD---GEDKYSEKAVKSLVKKLKKSNGLDELEKAITTQDPNTKCVTIPSARTDKGSTDLSNRSKGL  141 (430)
Q Consensus        65 ~~~~~v~~ll~~~~g~---~~~~~~~ka~~~l~Kklk~~~~le~L~~Av~~~~~~t~Cv~i~~~r~~dgrl~~~~~~k~~  141 (430)
                      ||+|+||||||||+|+   +||+|++|||++|||||||+++||+|++||+++|.+|+||+||  |++||||||++| |++
T Consensus         1 ~~~~~v~rll~~k~g~~~~eee~~~~kAi~sLvKkLKk~~~le~L~~Av~s~g~~t~CV~Ip--rsldgrl~v~~r-k~~   77 (126)
T d1ozja_           1 FTPPIVKRLLGWKKGEQNGQEEKWCEKAVKSLVKKLKKTGQLDELEKAITTQNVNTKCITIP--RSLDGRLQVSHR-KGL   77 (126)
T ss_dssp             CCCHHHHHHHTSCCCSCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHCCTTSCCCEEE--CCTTSCEEETTE-EEC
T ss_pred             CCcHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHCCCCCCCCEEee--cCCCccccccCC-CCC
Confidence            8999999999999996   7999999999999999998789999999999999999999999  999999999999 999


Q ss_pred             CceEeeeeecCCCCCCCcccccccccccccCCCCCeeecCccchhceee
Q psy13845        142 PHVIYCRLWRWPSLQSHNELRSIDLCAFGFSLKRDQVCVNPYHYQRIHT  190 (430)
Q Consensus       142 Phv~~crl~RwpdL~~~~eLk~l~~C~~~~~~~~~~vC~NPyHy~rv~~  190 (430)
                      |||||||||||||||+++|||+|+.|+++|+++.++||||||||+||++
T Consensus        78 Phvi~crlwRWpdL~~~~eLk~l~~C~~~~~~~~~~VC~NPyHy~Rve~  126 (126)
T d1ozja_          78 PHVIYCRLWRWPDLHSHHELRAMELCEFAFNMKKDEVCVNPYHYQRVET  126 (126)
T ss_dssp             HHHHHHHHHTCTTCCSGGGEEECTTCTTCGGGCCSEEECCGGGEEECCC
T ss_pred             CeeEEEeeeeCCCCCChhhcccCCcCCCccccCCCcEEeCCcchhhccC
Confidence            9999999999999999999999999999999999999999999999985
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ygsa_ b.26.1.1 (A:) Smad4 tumor suppressor C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mjsa_ b.26.1.1 (A:) Smad3 MH2 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ozja_ d.164.1.1 (A:) SMAD MH1 domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure