Psyllid ID: psy13852

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------
Protein Sequence
MATITMQHELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEHQ
Secondary Structure (PSIPRED)
cccccccEEEEEEEEEcEEEEEccccccHHHHHHHccccccccEEEEcccccccccccccccHHHHHHHHHHHHHccc
Secondary Structure Prediction (SSPRO)
ccEcccccEEEEEEEcccEEEcccccEcHHHHHHHcccccccccEEEEcccccccccccEcccHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MATITMQHELLQISHdgrirmldqpymtdlieansmghepnlidiysaswgptddgktvdgprnaTMRAIVRGVNEHQ
Flexible Loop (DISEMBL)
MATITMQHELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEHQ
Low Complexity Region (SEG)
MATITMQHELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEHQ
Disordered region (IsUnstruct)
*********LLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWG***************************
Disordered Region (DISOPRED)
*ATITMQHELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH*
Disordered Region (DISEMBL)
MATITMQHELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEHQ
Disordered Region (DISPRO)
*ATITMQHELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MATITMQHELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEHQ
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	78	2.2.26 [Sep-21-2011]
Q5REC2	638	Neuroendocrine convertase	yes	N/A	0.743	0.090	0.724	1e-19
P16519	638	Neuroendocrine convertase	no	N/A	0.743	0.090	0.724	1e-19
Q03333	638	Neuroendocrine convertase	yes	N/A	0.743	0.090	0.724	1e-19
P28841	637	Neuroendocrine convertase	yes	N/A	0.743	0.091	0.724	1e-19
P21661	637	Neuroendocrine convertase	yes	N/A	0.743	0.091	0.724	1e-19
Q9GLR0	638	Neuroendocrine convertase	yes	N/A	0.743	0.090	0.724	1e-19
Q63415	937	Proprotein convertase sub	no	N/A	0.756	0.062	0.583	4e-13
P29122	969	Proprotein convertase sub	no	N/A	0.756	0.060	0.583	4e-13
Q28193	797	Furin OS=Bos taurus GN=FU	no	N/A	0.756	0.074	0.583	2e-12
P29119	783	Furin-1 OS=Xenopus laevis	N/A	N/A	0.756	0.075	0.583	3e-12

>sp|Q5REC2|NEC2_PONAB Neuroendocrine convertase 2 OS=Pongo abelii GN=PCSK2 PE=2 SV=1

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 51/58 (87%)

Query: 19  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T++A+  GVN+
Sbjct: 238 IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNK 295

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.
Pongo abelii (taxid: 9601)
EC: 3EC: .EC: 4EC: .EC: 2EC: 1EC: .EC: 9EC: 4

>sp|P16519|NEC2_HUMAN Neuroendocrine convertase 2 OS=Homo sapiens GN=PCSK2 PE=2 SV=2

 Score = 95.1 bits (235), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 51/58 (87%)

Query: 19  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T++A+  GVN+
Sbjct: 238 IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNK 295

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q03333|NEC2_PIG Neuroendocrine convertase 2 OS=Sus scrofa GN=PCSK2 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 51/58 (87%)

Query: 19  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T++A+  GVN+
Sbjct: 238 IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNK 295

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.

Sus scrofa (taxid: 9823)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 4

>sp|P28841|NEC2_RAT Neuroendocrine convertase 2 OS=Rattus norvegicus GN=Pcsk2 PE=1 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 51/58 (87%)

Query: 19  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T++A+  GVN+
Sbjct: 237 IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNK 294

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 4

>sp|P21661|NEC2_MOUSE Neuroendocrine convertase 2 OS=Mus musculus GN=Pcsk2 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 51/58 (87%)

Query: 19  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T++A+  GVN+
Sbjct: 237 IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNK 294

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q9GLR0|NEC2_BOVIN Neuroendocrine convertase 2 OS=Bos taurus GN=PCSK2 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 42/58 (72%), Positives = 51/58 (87%)

Query: 19  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T++A+  GVN+
Sbjct: 238 IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNK 295

Involved in the processing of hormone and other protein precursors at sites comprised of pairs of basic amino acid residues.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 9

EC: 4

>sp|Q63415|PCSK6_RAT Proprotein convertase subtilisin/kexin type 6 OS=Rattus norvegicus GN=Pcsk6 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 17  GRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           G IRMLD   +TD++EA S+G  PN IDIYSASWGP DDGKTVDGP     +A   G+ +
Sbjct: 255 GGIRMLDGD-VTDVVEAKSLGIRPNYIDIYSASWGPDDDGKTVDGPGRLAKQAFEYGIKK 313

Likely to represent an endoprotease activity within the constitutive secretory pathway, with unique restricted distribution in both neuroendocrine and non-neuroendocrine tissues and capable of cleavage at the RX(K/R)R consensus motif.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|P29122|PCSK6_HUMAN Proprotein convertase subtilisin/kexin type 6 OS=Homo sapiens GN=PCSK6 PE=1 SV=1

 Score = 73.2 bits (178), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 17  GRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           G IRMLD   +TD++EA S+G  PN IDIYSASWGP DDGKTVDGP     +A   G+ +
Sbjct: 274 GGIRMLDGD-VTDVVEAKSLGIRPNYIDIYSASWGPDDDGKTVDGPGRLAKQAFEYGIKK 332

Likely to represent an endoprotease activity within the constitutive secretory pathway, with unique restricted distribution in both neuroendocrine and non-neuroendocrine tissues and capable of cleavage at the RX(K/R)R consensus motif.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: -

>sp|Q28193|FURIN_BOVIN Furin OS=Bos taurus GN=FURIN PE=1 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 17  GRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           G +RMLD   +TD +EA S+G  PN I IYSASWGP DDGKTVDGP +    A  RGV++
Sbjct: 222 GGVRMLDGE-VTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPAHLAEEAFFRGVSQ 280

Furin is likely to represent the ubiquitous endoprotease activity within constitutive secretory pathways and capable of cleavage at the RX(K/R)R consensus motif.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 7

EC: 5

>sp|P29119|FURI1_XENLA Furin-1 OS=Xenopus laevis GN=furin PE=2 SV=1

 Score = 70.5 bits (171), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 40/60 (66%), Gaps = 1/60 (1%)

Query: 17  GRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           G +RMLD   +TD +EA S+G  PN I IYSASWGP DDGKTVDGP      A  RGV +
Sbjct: 220 GGVRMLDGE-VTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPAKLAEEAFYRGVTQ 278

Furin is likely to represent the ubiquitous endoprotease activity within constitutive secretory pathways and capable of cleavage at the RX(K/R)R consensus motif.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 4

EC: .

EC: 2

EC: 1

EC: .

EC: 7

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
242014509	574	Neuroendocrine convertase 2 precursor, p	0.743	0.101	1.0	3e-27
188531994	654	proprotein convertase type 2 precursor [	0.743	0.088	1.0	3e-27
391338328	639	PREDICTED: neuroendocrine convertase 2-l	0.743	0.090	1.0	4e-27
241634905	430	prohormone convertase, putative [Ixodes	0.743	0.134	1.0	4e-27
157813670	108	putative neuroendocrine convertase 2 pre	0.769	0.555	0.966	6e-27
262300897	108	prohormone convertase [Stenochrus portor	0.769	0.555	0.966	6e-27
262300835	108	prohormone convertase [Eumesocampa frigi	0.769	0.555	0.966	6e-27
262300801	108	prohormone convertase [Aphonopelma chalc	0.769	0.555	0.966	6e-27
262300873	108	prohormone convertase [Nicoletia meinert	0.769	0.555	0.966	6e-27
262300807	108	prohormone convertase [Abacion magnum] g	0.769	0.555	0.966	6e-27

>gi|242014509|ref|XP_002427932.1| Neuroendocrine convertase 2 precursor, putative [Pediculus humanus corporis] gi|212512416|gb|EEB15194.1| Neuroendocrine convertase 2 precursor, putative [Pediculus humanus corporis]

 Score =  125 bits (314), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 58/58 (100%), Positives = 58/58 (100%)

Query: 19  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE
Sbjct: 187 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 244

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|188531994|gb|ACD63025.1| proprotein convertase type 2 precursor [Dermacentor variabilis]

 Score =  125 bits (314), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 58/58 (100%), Positives = 58/58 (100%)

Query: 19  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE
Sbjct: 244 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 301

Source: Dermacentor variabilis

Species: Dermacentor variabilis

Genus: Dermacentor

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|391338328|ref|XP_003743511.1| PREDICTED: neuroendocrine convertase 2-like [Metaseiulus occidentalis]

 Score =  125 bits (314), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/58 (100%), Positives = 58/58 (100%)

Query: 19  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE
Sbjct: 248 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 305

Source: Metaseiulus occidentalis

Species: Metaseiulus occidentalis

Genus: Metaseiulus

Family: Phytoseiidae

Order: Mesostigmata

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241634905|ref|XP_002410536.1| prohormone convertase, putative [Ixodes scapularis] gi|215503444|gb|EEC12938.1| prohormone convertase, putative [Ixodes scapularis]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/58 (100%), Positives = 58/58 (100%)

Query: 19 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
          IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE
Sbjct: 31 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 88

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157813670|gb|ABV81580.1| putative neuroendocrine convertase 2 precursor [Mastigoproctus giganteus]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/60 (96%), Positives = 59/60 (98%)

Query: 19 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEHQ 78
          IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE +
Sbjct: 32 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 91

Source: Mastigoproctus giganteus

Species: Mastigoproctus giganteus

Genus: Mastigoproctus

Family: Thelyphonidae

Order: Uropygi

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|262300897|gb|ACY43041.1| prohormone convertase [Stenochrus portoricensis]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/60 (96%), Positives = 59/60 (98%)

Query: 19 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEHQ 78
          IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE +
Sbjct: 32 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 91

Source: Stenochrus portoricensis

Species: Stenochrus portoricensis

Genus: Stenochrus

Family: Schizomidae

Order: Schizomida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|262300835|gb|ACY43010.1| prohormone convertase [Eumesocampa frigilis]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/60 (96%), Positives = 59/60 (98%)

Query: 19 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEHQ 78
          IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE +
Sbjct: 32 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 91

Source: Eumesocampa frigilis

Species: Eumesocampa frigilis

Genus: Eumesocampa

Family: Campodeidae

Class: Diplura

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|262300801|gb|ACY42993.1| prohormone convertase [Aphonopelma chalcodes]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/60 (96%), Positives = 59/60 (98%)

Query: 19 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEHQ 78
          IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE +
Sbjct: 32 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 91

Source: Aphonopelma chalcodes

Species: Aphonopelma chalcodes

Genus: Aphonopelma

Family: Theraphosidae

Order: Araneae

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|262300873|gb|ACY43029.1| prohormone convertase [Nicoletia meinerti]

 Score =  124 bits (311), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/60 (96%), Positives = 59/60 (98%)

Query: 19 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEHQ 78
          IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE +
Sbjct: 32 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 91

Source: Nicoletia meinerti

Species: Nicoletia meinerti

Genus: Nicoletia

Family: Nicoletiidae

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|262300807|gb|ACY42996.1| prohormone convertase [Abacion magnum] gi|262300827|gb|ACY43006.1| prohormone convertase [Craterostigmus tasmanianus] gi|262300837|gb|ACY43011.1| prohormone convertase [Ephemerella inconstans] gi|262300875|gb|ACY43030.1| prohormone convertase [Orchesella imitari] gi|262300883|gb|ACY43034.1| prohormone convertase [Polyxenus fasciculatus] gi|262300899|gb|ACY43042.1| prohormone convertase [Tomocerus sp. 'Tom2']

 Score =  124 bits (311), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 58/60 (96%), Positives = 59/60 (98%)

Query: 19 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEHQ 78
          IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE +
Sbjct: 32 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR 91

Source: Abacion magnum

Species: Abacion magnum

Genus: Abacion

Family: Callipodidae

Order: Callipodida

Class: Diplopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	78
UNIPROTKB|E9P883	527	egl-3 "Protein EGL-3, isoform	0.820	0.121	0.850	9.2e-26
UNIPROTKB|Q18772	556	egl-3 "Protein EGL-3, isoform	0.820	0.115	0.850	1.1e-25
WB|WBGene00001172	652	egl-3 [Caenorhabditis elegans	0.820	0.098	0.850	1.9e-25
UNIPROTKB|G5ECN9	652	egl-3 "Prohormone convertase 2	0.820	0.098	0.850	1.9e-25
FB|FBgn0023179	654	amon "amontillado" [Drosophila	0.820	0.097	0.820	2.3e-24
MGI|MGI:97512	637	Pcsk2 "proprotein convertase s	0.743	0.091	0.724	2.2e-19
RGD|3273	637	Pcsk2 "proprotein convertase s	0.743	0.091	0.724	2.2e-19
ZFIN|ZDB-GENE-090608-1	703	pcsk2 "proprotein convertase s	0.743	0.082	0.724	1.1e-18
UNIPROTKB|F1SBI5	637	PCSK2 "Neuroendocrine converta	0.743	0.091	0.724	1.4e-18
UNIPROTKB|A7MBJ9	638	PCSK2 "Neuroendocrine converta	0.743	0.090	0.724	1.5e-18

UNIPROTKB|E9P883 egl-3 "Protein EGL-3, isoform c" [Caenorhabditis elegans (taxid:6239)]

 Score = 297 (109.6 bits), Expect = 9.2e-26, P = 9.2e-26
 Identities = 57/67 (85%), Positives = 62/67 (92%)

Query:    13 ISHDGR---IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRA 69
             +++DG+   IRMLDQPYMTDLIEANSMGHEP+ I IYSASWGPTDDGKTVDGPRNATMRA
Sbjct:   111 VAYDGKVAGIRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRA 170

Query:    70 IVRGVNE 76
             IVRGVNE
Sbjct:   171 IVRGVNE 177

GO:0005615 "extracellular space" evidence=IBA

GO:0004252 "serine-type endopeptidase activity" evidence=IBA

UNIPROTKB|Q18772 egl-3 "Protein EGL-3, isoform b" [Caenorhabditis elegans (taxid:6239)]

 Score = 297 (109.6 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 57/67 (85%), Positives = 62/67 (92%)

Query:    13 ISHDGR---IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRA 69
             +++DG+   IRMLDQPYMTDLIEANSMGHEP+ I IYSASWGPTDDGKTVDGPRNATMRA
Sbjct:   140 VAYDGKVAGIRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRA 199

Query:    70 IVRGVNE 76
             IVRGVNE
Sbjct:   200 IVRGVNE 206

GO:0005615 "extracellular space" evidence=IBA

GO:0004252 "serine-type endopeptidase activity" evidence=IBA

WB|WBGene00001172 egl-3 [Caenorhabditis elegans (taxid:6239)]

 Score = 297 (109.6 bits), Expect = 1.9e-25, P = 1.9e-25
 Identities = 57/67 (85%), Positives = 62/67 (92%)

Query:    13 ISHDGR---IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRA 69
             +++DG+   IRMLDQPYMTDLIEANSMGHEP+ I IYSASWGPTDDGKTVDGPRNATMRA
Sbjct:   236 VAYDGKVAGIRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRA 295

Query:    70 IVRGVNE 76
             IVRGVNE
Sbjct:   296 IVRGVNE 302

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0008340 "determination of adult lifespan" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0061096 "negative regulation of turning behavior involved in mating" evidence=IMP

UNIPROTKB|G5ECN9 egl-3 "Prohormone convertase 2" [Caenorhabditis elegans (taxid:6239)]

 Score = 297 (109.6 bits), Expect = 1.9e-25, P = 1.9e-25
 Identities = 57/67 (85%), Positives = 62/67 (92%)

Query:    13 ISHDGR---IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRA 69
             +++DG+   IRMLDQPYMTDLIEANSMGHEP+ I IYSASWGPTDDGKTVDGPRNATMRA
Sbjct:   236 VAYDGKVAGIRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRA 295

Query:    70 IVRGVNE 76
             IVRGVNE
Sbjct:   296 IVRGVNE 302

GO:0005615 "extracellular space" evidence=IBA

GO:0004252 "serine-type endopeptidase activity" evidence=IBA

FB|FBgn0023179 amon "amontillado" [Drosophila melanogaster (taxid:7227)]

 Score = 287 (106.1 bits), Expect = 2.3e-24, P = 2.3e-24
 Identities = 55/67 (82%), Positives = 61/67 (91%)

Query:    13 ISHDGRI---RMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRA 69
             +++D +I   RMLDQPYMTDLIEANSMGHEP+ I IYSASWGPTDDGKTVDGPRNATMRA
Sbjct:   258 VAYDSKIAGIRMLDQPYMTDLIEANSMGHEPHKIHIYSASWGPTDDGKTVDGPRNATMRA 317

Query:    70 IVRGVNE 76
             IV+GVNE
Sbjct:   318 IVQGVNE 324

GO:0008233 "peptidase activity" evidence=ISS;IDA

GO:0016486 "peptide hormone processing" evidence=ISS;IMP

GO:0004252 "serine-type endopeptidase activity" evidence=ISS;IBA

GO:0035187 "hatching behavior" evidence=IMP

GO:0006508 "proteolysis" evidence=IDA

GO:0005576 "extracellular region" evidence=IDA

GO:0002165 "instar larval or pupal development" evidence=IMP

GO:0033500 "carbohydrate homeostasis" evidence=IMP

GO:0035180 "larval wandering behavior" evidence=IMP

GO:0005615 "extracellular space" evidence=IBA

GO:0016485 "protein processing" evidence=IBA

MGI|MGI:97512 Pcsk2 "proprotein convertase subtilisin/kexin type 2" [Mus musculus (taxid:10090)]

 Score = 233 (87.1 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
 Identities = 42/58 (72%), Positives = 51/58 (87%)

Query:    19 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
             IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T++A+  GVN+
Sbjct:   237 IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNK 294

GO:0004175 "endopeptidase activity" evidence=IDA

GO:0004252 "serine-type endopeptidase activity" evidence=ISO;IDA

GO:0005615 "extracellular space" evidence=ISO;IDA

GO:0006508 "proteolysis" evidence=ISO;IMP

GO:0008233 "peptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

GO:0016020 "membrane" evidence=ISO

GO:0016485 "protein processing" evidence=IDA

GO:0016486 "peptide hormone processing" evidence=ISO;IDA;IMP

GO:0016540 "protein autoprocessing" evidence=IDA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030070 "insulin processing" evidence=ISO

GO:0030141 "secretory granule" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0032403 "protein complex binding" evidence=ISO

GO:0034230 "enkephalin processing" evidence=IDA

GO:0034231 "islet amyloid polypeptide processing" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0043204 "perikaryon" evidence=ISO

RGD|3273 Pcsk2 "proprotein convertase subtilisin/kexin type 2" [Rattus norvegicus (taxid:10116)]

 Score = 233 (87.1 bits), Expect = 2.2e-19, Sum P(2) = 2.2e-19
 Identities = 42/58 (72%), Positives = 51/58 (87%)

Query:    19 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
             IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T++A+  GVN+
Sbjct:   237 IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNK 294

GO:0004175 "endopeptidase activity" evidence=ISO

GO:0004252 "serine-type endopeptidase activity" evidence=ISO;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005615 "extracellular space" evidence=ISO;IBA

GO:0006508 "proteolysis" evidence=ISO;IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0009790 "embryo development" evidence=IEP

GO:0016020 "membrane" evidence=IEA;ISO

GO:0016485 "protein processing" evidence=ISO

GO:0016486 "peptide hormone processing" evidence=ISO;IMP

GO:0016540 "protein autoprocessing" evidence=IEA;ISO

GO:0030070 "insulin processing" evidence=IEA;ISO

GO:0030133 "transport vesicle" evidence=IEA

GO:0030425 "dendrite" evidence=IDA

GO:0032403 "protein complex binding" evidence=IPI

GO:0034230 "enkephalin processing" evidence=IEA;ISO

GO:0034231 "islet amyloid polypeptide processing" evidence=IMP

GO:0043025 "neuronal cell body" evidence=IDA

GO:0043204 "perikaryon" evidence=IDA

GO:0030141 "secretory granule" evidence=IDA

ZFIN|ZDB-GENE-090608-1 pcsk2 "proprotein convertase subtilisin/kexin type 2" [Danio rerio (taxid:7955)]

 Score = 235 (87.8 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 42/58 (72%), Positives = 51/58 (87%)

Query:    19 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
             IRMLDQP+MTD+IEA+S+ H P +IDIYSASWGPTDDGKTVDGPR  T++A+  GVN+
Sbjct:   301 IRMLDQPFMTDIIEASSISHMPQVIDIYSASWGPTDDGKTVDGPRELTLQAMADGVNK 358

GO:0006508 "proteolysis" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=IEA

UNIPROTKB|F1SBI5 PCSK2 "Neuroendocrine convertase 2" [Sus scrofa (taxid:9823)]

 Score = 233 (87.1 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 42/58 (72%), Positives = 51/58 (87%)

Query:    19 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
             IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T++A+  GVN+
Sbjct:   238 IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNK 295

GO:0034230 "enkephalin processing" evidence=IEA

GO:0030070 "insulin processing" evidence=IEA

GO:0016540 "protein autoprocessing" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

UNIPROTKB|A7MBJ9 PCSK2 "Neuroendocrine convertase 2" [Bos taurus (taxid:9913)]

 Score = 233 (87.1 bits), Expect = 1.5e-18, P = 1.5e-18
 Identities = 42/58 (72%), Positives = 51/58 (87%)

Query:    19 IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
             IRMLDQP+MTD+IEA+S+ H P LIDIYSASWGPTD+GKTVDGPR  T++A+  GVN+
Sbjct:   238 IRMLDQPFMTDIIEASSISHMPQLIDIYSASWGPTDNGKTVDGPRELTLQAMADGVNK 295

GO:0034230 "enkephalin processing" evidence=IEA

GO:0030070 "insulin processing" evidence=IEA

GO:0016540 "protein autoprocessing" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0007399 "nervous system development" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0005615 "extracellular space" evidence=IEA

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5REC2	NEC2_PONAB	3, ., 4, ., 2, 1, ., 9, 4	0.7241	0.7435	0.0909	yes	N/A
Q03333	NEC2_PIG	3, ., 4, ., 2, 1, ., 9, 4	0.7241	0.7435	0.0909	yes	N/A
P21661	NEC2_MOUSE	3, ., 4, ., 2, 1, ., 9, 4	0.7241	0.7435	0.0910	yes	N/A
P28841	NEC2_RAT	3, ., 4, ., 2, 1, ., 9, 4	0.7241	0.7435	0.0910	yes	N/A
Q9GLR0	NEC2_BOVIN	3, ., 4, ., 2, 1, ., 9, 4	0.7241	0.7435	0.0909	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	78
cd04059	297	cd04059, Peptidases_S8_Protein_convertases_Kexins_	5e-23
pfam00082	277	pfam00082, Peptidase_S8, Subtilase family	0.003

>gnl|CDD|173789 cd04059, Peptidases_S8_Protein_convertases_Kexins_Furin-like, Peptidase S8 family domain in Protein convertases

 Score = 88.4 bits (220), Expect = 5e-23
 Identities = 34/57 (59%), Positives = 40/57 (70%), Gaps = 1/57 (1%)

Query: 19  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVN 75
           IRMLD   +TD++EA S+G  P+ IDIYS SWGP DDGKTVDGP     RA+  GV 
Sbjct: 116 IRMLDGD-VTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVT 171

Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation. Length = 297

>gnl|CDD|215701 pfam00082, Peptidase_S8, Subtilase family

 Score = 33.9 bits (78), Expect = 0.003
 Identities = 14/59 (23%), Positives = 23/59 (38%), Gaps = 9/59 (15%)

Query: 19  IRMLDQPYMTDLIEANSMG---HEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGV 74
           +++L     TD   A ++      PN I + + S GP D       P ++   AI    
Sbjct: 77  VKVLPGSGGTDSELAGAIEWAAERPNDIRVINMSLGPVDG------PPSSWSSAIDELA 129

Subtilases are a family of serine proteases. They appear to have independently and convergently evolved an Asp/Ser/His catalytic triad, like that found in the trypsin serine proteases (see pfam00089). Structure is an alpha/beta fold containing a 7-stranded parallel beta sheet, order 2314567. Length = 277

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	78
KOG3526|consensus	629		99.95
KOG3525|consensus	431		99.72
cd04059	297	Peptidases_S8_Protein_convertases_Kexins_Furin-lik	98.79
cd07496	285	Peptidases_S8_13 Peptidase S8 family domain, uncha	97.69
cd07474	295	Peptidases_S8_subtilisin_Vpr-like Peptidase S8 fam	97.62
cd07483	291	Peptidases_S8_Subtilisin_Novo-like Peptidase S8 fa	97.59
cd07481	264	Peptidases_S8_BacillopeptidaseF-like Peptidase S8	97.57
cd07497	311	Peptidases_S8_14 Peptidase S8 family domain, uncha	97.55
cd04848	267	Peptidases_S8_Autotransporter_serine_protease_like	97.51
cd07493	261	Peptidases_S8_9 Peptidase S8 family domain, unchar	97.51
cd07490	254	Peptidases_S8_6 Peptidase S8 family domain, unchar	97.44
cd07487	264	Peptidases_S8_1 Peptidase S8 family domain, unchar	97.41
cd07494	298	Peptidases_S8_10 Peptidase S8 family domain, uncha	97.36
cd07473	259	Peptidases_S8_Subtilisin_like Peptidase S8 family	97.34
cd04843	277	Peptidases_S8_11 Peptidase S8 family domain, uncha	97.31
cd07482	294	Peptidases_S8_Lantibiotic_specific_protease Peptid	96.93
cd07480	297	Peptidases_S8_12 Peptidase S8 family domain, uncha	96.87
cd07476	267	Peptidases_S8_thiazoline_oxidase_subtilisin-like_p	96.85
cd07485	273	Peptidases_S8_Fervidolysin_like Peptidase S8 famil	96.81
cd07498	242	Peptidases_S8_15 Peptidase S8 family domain, uncha	96.79
cd07475	346	Peptidases_S8_C5a_Peptidase Peptidase S8 family do	96.68
cd07492	222	Peptidases_S8_8 Peptidase S8 family domain, unchar	96.59
cd04077	255	Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8	96.51
cd05561	239	Peptidases_S8_4 Peptidase S8 family domain, unchar	96.39
cd07484	260	Peptidases_S8_Thermitase_like Peptidase S8 family	96.38
cd07489	312	Peptidases_S8_5 Peptidase S8 family domain, unchar	96.23
cd07491	247	Peptidases_S8_7 Peptidase S8 family domain, unchar	96.13
cd07479	255	Peptidases_S8_SKI-1_like Peptidase S8 family domai	96.11
cd07477	229	Peptidases_S8_Subtilisin_subset Peptidase S8 famil	96.1
cd00306	241	Peptidases_S8_S53 Peptidase domain in the S8 and S	95.54
PTZ00262	639	subtilisin-like protease; Provisional	95.46
cd04842	293	Peptidases_S8_Kp43_protease Peptidase S8 family do	95.45
cd04852	307	Peptidases_S8_3 Peptidase S8 family domain, unchar	95.43
PF00082	282	Peptidase_S8: Subtilase family This is family S8 i	95.32
cd04056	361	Peptidases_S53 Peptidase domain in the S53 family.	94.58
cd05562	275	Peptidases_S53_like Peptidase domain in the S53 fa	91.54
cd04857	412	Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptid	89.86
cd04847	291	Peptidases_S8_Subtilisin_like_2 Peptidase S8 famil	85.49

>KOG3526|consensus

Probab=99.95  E-value=7.5e-29  Score=198.13  Aligned_cols=71  Identities=79%  Similarity=1.136  Sum_probs=69.6

Q ss_pred             cccccCCCcceeeeeCCCCCChHHHhhhhcCCCCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcCC
Q psy13852          8 HELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEHQ   78 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~GR   78 (78)
                      .||||++||+||||||+|++||++||+++++.++.|||||+||||.|||||||||..+|.+||..||++||
T Consensus       229 vgvaydskvagirmldqpymtdlieansmghep~kihiysaswgptddgktvdgprnatmraiv~gvnegr  299 (629)
T KOG3526|consen  229 VGVAYDSKVAGIRMLDQPYMTDLIEANSMGHEPSKIHIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEGR  299 (629)
T ss_pred             eeeeeccccceeeecCCchhhhhhhhcccCCCCceEEEEecccCcCCCCcccCCchhHHHHHHHHhhhccc
Confidence            35999999999999999999999999999999999999999999999999999999999999999999998

>KOG3525|consensus

Probab=99.72  E-value=1.5e-18  Score=136.73  Aligned_cols=76  Identities=41%  Similarity=0.646  Sum_probs=70.8

Q ss_pred             ceeeeec-------ccccCCCcceeeeeCCCCCChHHHhhhhcCCCCcceeEeCCCCCCCCCccccCchHHHHHHHHHHH
Q psy13852          2 ATITMQH-------ELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGV   74 (78)
Q Consensus         2 ~~i~m~~-------gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv   74 (78)
                      +++++.|       |++|+++++|+|||++ .++|.+|+.++.|.++++|||||||||.|||+|+++|..|.++|+++++
T Consensus        88 ~~~a~~~~~~~C~vg~~~~~~~~g~~~l~~-~v~~~~~~~~~~~~~~~~di~scsw~pddd~~t~~~~~~l~~~~~~~~~  166 (431)
T KOG3525|consen   88 GCVAARANNLTCGVGVAYNATIGGIRMLAG-CVSDAVEAPSLGFGPCHIDIYSCSWGPDDDGKTCDGPGTLAREALVYGR  166 (431)
T ss_pred             cccccccCCCcCCCCcccCccccceeeeee-ecccceecccccCCCCCceeecCcCCcccCCCcCCCCcchhhhhhhccc
Confidence            3455555       6999999999999999 5999999999999999999999999999999999999999999999999


Q ss_pred             hcCC
Q psy13852         75 NEHQ   78 (78)
Q Consensus        75 ~~GR   78 (78)
                      ..||
T Consensus       167 ~~g~  170 (431)
T KOG3525|consen  167 GCGR  170 (431)
T ss_pred             cccc
Confidence            9887

>cd04059 Peptidases_S8_Protein_convertases_Kexins_Furin-like Peptidase S8 family domain in Protein convertases

Probab=98.79  E-value=2.3e-08  Score=72.13  Aligned_cols=70  Identities=50%  Similarity=0.791  Sum_probs=63.8

Q ss_pred             ecccccCCCcceeeeeCCCCCChHHHhhhhcCCCCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          7 QHELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .+||||+|+|..+|+++. ..++..++.++.+..+.++|.++|||+......+++|..+..+|+++.++++
T Consensus       104 ~~GvAp~a~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~a~~~a~~~~  173 (297)
T cd04059         104 GVGVAPGAKLGGIRMLDG-DVTDVVEAESLGLNPDYIDIYSNSWGPDDDGKTVDGPGPLAQRALENGVTNG  173 (297)
T ss_pred             cccccccceEeEEEecCC-ccccHHHHHHHhcccCCceEEECCCCCCCCCCccCCCcHHHHHHHHHHHHhC
Confidence            368999999999999999 4889999999999999999999999998888888999999999999988754

Protein convertases, whose members include furins and kexins, are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad that is not homologous to trypsin. Kexins are involved in the activation of peptide hormones, growth factors, and viral proteins. Furin cleaves cell surface vasoactive peptides and proteins involved in cardiovascular tissue remodeling in the TGN, at cell surface, or in endosomes but rarely in the ER. Furin also plays a key role in blood pressure regulation though the activation of transforming growth factor (TGF)-beta. High specificity is seen for cleavage after dibasic (Lys-Arg or Arg-Arg) or multiple basic residues in protein convertases. There is also strong sequence conservation.

>cd07496 Peptidases_S8_13 Peptidase S8 family domain, uncharacterized subfamily 13

Probab=97.69  E-value=9.5e-05  Score=53.72  Aligned_cols=64  Identities=16%  Similarity=-0.022  Sum_probs=43.9

Q ss_pred             cccccCCCcceeeeeCCCCCChHHHhhhhcCC-----------CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhc
Q psy13852          8 HELLQISHDGRIRMLDQPYMTDLIEANSMGHE-----------PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE   76 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~-----------~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~   76 (78)
                      .||||+|+|-.+|+++...-+...-++++.|.           .+.++|.++|||.....      ....++|+.....+
T Consensus        92 ~GvAp~a~i~~~~v~~~~~~~~~~i~~a~~~a~~~~~~~~~~~~~~~~Iin~S~G~~~~~------~~~~~~ai~~a~~~  165 (285)
T cd07496          92 AGVAWGARILPVRVLGKCGGTLSDIVDGMRWAAGLPVPGVPVNPNPAKVINLSLGGDGAC------SATMQNAINDVRAR  165 (285)
T ss_pred             eeecCCCeEEEEEEecCCCCcHHHHHHHHHHHhccCcCCCcccCCCCeEEEeCCCCCCCC------CHHHHHHHHHHHHC
Confidence            48999999999999975212333334454433           46789999999975432      34566777777776


Q ss_pred             C
Q psy13852         77 H   77 (78)
Q Consensus        77 G   77 (78)
                      |
T Consensus       166 G  166 (285)
T cd07496         166 G  166 (285)
T ss_pred             C
Confidence            6

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07474 Peptidases_S8_subtilisin_Vpr-like Peptidase S8 family domain in Vpr-like proteins

Probab=97.62  E-value=5.5e-05  Score=54.45  Aligned_cols=67  Identities=15%  Similarity=0.139  Sum_probs=45.4

Q ss_pred             eecccccCCCcceeeeeCC-CCCChHHHhhhhcCC-CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          6 MQHELLQISHDGRIRMLDQ-PYMTDLIEANSMGHE-PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         6 m~~gvAy~a~i~GIRmL~g-~~vtd~~EA~Als~~-~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      ...|||++++|-.+|+++. ...+...-..++.+. .+.++|+++|||.....     +.....+++++..++|
T Consensus        81 ~~~Giap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Iin~S~g~~~~~-----~~~~~~~~~~~~~~~g  149 (295)
T cd07474          81 TIKGVAPKADLYAYKVLGPGGSGTTDVIIAAIEQAVDDGMDVINLSLGSSVNG-----PDDPDAIAINNAVKAG  149 (295)
T ss_pred             ceEeECCCCeEEEEEeecCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCCC-----CCCHHHHHHHHHHhcC
Confidence            3469999999999999962 123333333444443 24899999999986543     4455667777777665

The maturation of the peptide antibiotic (lantibiotic) subtilin in Bacillus subtilis ATCC 6633 includes posttranslational modifications of the propeptide and proteolytic cleavage of the leader peptide. Vpr was identified as one of the proteases, along with WprA, that are capable of processing subtilin. Asp, Ser, His triadPeptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07483 Peptidases_S8_Subtilisin_Novo-like Peptidase S8 family domain in Subtilisin_Novo-like proteins

Probab=97.59  E-value=8.8e-05  Score=54.71  Aligned_cols=65  Identities=14%  Similarity=0.019  Sum_probs=46.5

Q ss_pred             cccccCCCcceeeeeCCCCCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQPYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+++|..+|+++....++...+.|+.|.. +.++|.++|||..-     .......++|++...++|
T Consensus       106 ~GvAp~a~i~~~k~~~~g~~~~~~i~~Ai~~a~~~g~~IiN~S~G~~~-----~~~~~~~~~ai~~a~~~g  171 (291)
T cd07483         106 DGVADNVKIMPLRIVPNGDERDKDIANAIRYAVDNGAKVINMSFGKSF-----SPNKEWVDDAIKYAESKG  171 (291)
T ss_pred             EEECCCCEEEEEEEecCCCcCHHHHHHHHHHHHHCCCcEEEeCCCCCC-----CCccHHHHHHHHHHHhCC
Confidence            479999999999999642355666677787764 47999999999532     112345667777776665

Subtilisins are a group of alkaline proteinases originating from different strains of Bacillus subtilis. Novo is one of the strains that produced enzymes belonging to this group. The enzymes obtained from the Novo and BPN' strains are identical. The Carlsburg and Novo subtilisins are thought to have arisen from a common ancestral protein. They have similar peptidase and esterase activities, pH profiles, catalyze transesterification reactions, and are both inhibited by diispropyl fluorophosphate, though they differ in 85 positions in the amino acid sequence. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a cat

>cd07481 Peptidases_S8_BacillopeptidaseF-like Peptidase S8 family domain in BacillopeptidaseF-like proteins

Probab=97.57  E-value=0.00019  Score=51.66  Aligned_cols=48  Identities=17%  Similarity=0.102  Sum_probs=33.6

Q ss_pred             cccccCCCcceeeeeCCCC--CChHHHhhhhcCC-----------CCcceeEeCCCCCCCC
Q psy13852          8 HELLQISHDGRIRMLDQPY--MTDLIEANSMGHE-----------PNLIDIYSASWGPTDD   55 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~--vtd~~EA~Als~~-----------~~~idIYS~SWGP~Dd   55 (78)
                      .||||+++|-.+|+++...  ..++.++..+...           .+.+||.++|||....
T Consensus        72 ~GvAp~a~i~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~Iin~S~G~~~~  132 (264)
T cd07481          72 IGVAPGARWIACRALDRNGGNDADYLRCAQWMLAPTDSAGNPADPDLAPDVINNSWGGPSG  132 (264)
T ss_pred             eEECCCCeEEEEEeecCCCCcHHHHHHHHHHHHhcccccccccccccCCeEEEeCCCcCCC
Confidence            6799999999999998632  2234444333221           2568999999998665

Bacillus subtilis produces and secretes proteases and other types of exoenzymes at the end of the exponential phase of growth. The ones that make up this group is known as bacillopeptidase F, encoded by bpr, a serine protease with high esterolytic activity which is inhibited by PMSF. Like other members of the peptidases S8 family these have a Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity.

>cd07497 Peptidases_S8_14 Peptidase S8 family domain, uncharacterized subfamily 14

Probab=97.55  E-value=0.00014  Score=54.99  Aligned_cols=55  Identities=18%  Similarity=0.072  Sum_probs=35.3

Q ss_pred             cccccCCCcceeeeeCCCCCC--hHH--------HhhhhcCC-CCcceeEeCCCCCCCCCccccCc
Q psy13852          8 HELLQISHDGRIRMLDQPYMT--DLI--------EANSMGHE-PNLIDIYSASWGPTDDGKTVDGP   62 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~vt--d~~--------EA~Als~~-~~~idIYS~SWGP~DdG~t~~gP   62 (78)
                      .||||+|||.++|+|+.....  ...        .+.++.|. .+.+||.|+|||......+...|
T Consensus        86 ~GVAP~A~l~~vkvl~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~VIN~S~G~~~~~~~~~~~  151 (311)
T cd07497          86 RGIAPDAKIAAVKALWFGDVIYAWLWTAGFDPVDRKLSWIYTGGPRVDVISNSWGISNFAYTGYAP  151 (311)
T ss_pred             eeeCCCCEEEEEEEEecCCcchhhhhhhccchhhhhhhhhhccCCCceEEEecCCcCCCCcccccc
Confidence            589999999999999521122  111        12333443 46899999999986654433333

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04848 Peptidases_S8_Autotransporter_serine_protease_like Peptidase S8 family domain in Autotransporter serine proteases

Probab=97.51  E-value=0.00017  Score=50.10  Aligned_cols=71  Identities=20%  Similarity=0.171  Sum_probs=45.5

Q ss_pred             ecccccCCCcceeeeeCCC--CCChHHHhhhhcCC-CCcceeEeCCCCCCCCCcccc--------CchHHHHHHHHHHHh
Q psy13852          7 QHELLQISHDGRIRMLDQP--YMTDLIEANSMGHE-PNLIDIYSASWGPTDDGKTVD--------GPRNATMRAIVRGVN   75 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g~--~vtd~~EA~Als~~-~~~idIYS~SWGP~DdG~t~~--------gP~~l~~~Al~~Gv~   75 (78)
                      .+|+|++++|-.+|+++.+  ..++.....++.+. .+.+||++.|||+.+.....+        .......+++.....
T Consensus        65 ~~GiAp~a~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  144 (267)
T cd04848          65 MHGVAPDATLYSARASASAGSTFSDADIAAAYDFLAASGVRIINNSWGGNPAIDTVSTTYKGSAATQGNTLLAALARAAN  144 (267)
T ss_pred             cccCCcCCEEEEEeccCCCCcccchHHHHHHHHHHHhCCCeEEEccCCCCCcccccccchhhhccccchHHHHHHHHHhh
Confidence            4599999999999999773  12233333444433 357999999999988665433        233444455555555


Q ss_pred             cC
Q psy13852         76 EH   77 (78)
Q Consensus        76 ~G   77 (78)
                      +|
T Consensus       145 ~g  146 (267)
T cd04848         145 AG  146 (267)
T ss_pred             CC
Confidence            44

Autotransporter serine proteases belong to Peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Autotransporters are a superfamily of outer membrane/secreted proteins of gram-negative bacteria. The presence of these subtilisin-like domains in these autotransporters are may enable them to be auto-catalytic and may also serve to allow them to act as a maturation protease cleaving other outer membrane proteins at the cell surface.

>cd07493 Peptidases_S8_9 Peptidase S8 family domain, uncharacterized subfamily 9

Probab=97.51  E-value=0.00015  Score=52.02  Aligned_cols=70  Identities=19%  Similarity=0.056  Sum_probs=46.9

Q ss_pred             ecccccCCCcceeeeeCCCCCChHHH----hhhhcCC-CCcceeEeCCCCCCCCCcc--------ccCchHHHHHHHHHH
Q psy13852          7 QHELLQISHDGRIRMLDQPYMTDLIE----ANSMGHE-PNLIDIYSASWGPTDDGKT--------VDGPRNATMRAIVRG   73 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g~~vtd~~E----A~Als~~-~~~idIYS~SWGP~DdG~t--------~~gP~~l~~~Al~~G   73 (78)
                      .+||||+|++-.+|+.+.. .....+    +.++.|. .+.++|+++|||.......        ++++.....+|+++.
T Consensus        65 ~~GvAp~a~l~~~~~~~~~-~~~~~~~~~~~~ai~~a~~~~v~VIn~S~G~~~~~~~~~~~~~~~~~~~~~~l~~a~~~a  143 (261)
T cd07493          65 MVGTAPNASYYLARTEDVA-SETPVEEDNWVAAAEWADSLGVDIISSSLGYTTFDNPTYSYTYADMDGKTSFISRAANIA  143 (261)
T ss_pred             EEEeCCCCEEEEEEecccC-CcccccHHHHHHHHHHHHHcCCCEEEeCCCcCCCCCcccccccccccccchHHHHHHHHH
Confidence            3689999999999987652 322222    3445543 3579999999997654322        445555566778777


Q ss_pred             HhcC
Q psy13852         74 VNEH   77 (78)
Q Consensus        74 v~~G   77 (78)
                      .++|
T Consensus       144 ~~~g  147 (261)
T cd07493         144 ASKG  147 (261)
T ss_pred             HhCC
Confidence            7765

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07490 Peptidases_S8_6 Peptidase S8 family domain, uncharacterized subfamily 6

Probab=97.44  E-value=0.00013  Score=51.43  Aligned_cols=62  Identities=16%  Similarity=0.024  Sum_probs=40.3

Q ss_pred             cccccCCCcceeeeeCCCCCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHH
Q psy13852          8 HELLQISHDGRIRMLDQPYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVR   72 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~   72 (78)
                      .||||+++|-.+|+++....+...-..++.|.. +.+||+++|||..+..   ..|-....+++.+
T Consensus        63 ~GvAp~a~i~~~~v~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~---~~~~~~~~~~~~~  125 (254)
T cd07490          63 IGVAPEADLLHGKVLDDGGGSLSQIIAGMEWAVEKDADVVSMSLGGTYYS---EDPLEEAVEALSN  125 (254)
T ss_pred             EEECCCCEEEEEEEecCCCCcHHHHHHHHHHHHhCCCCEEEECCCcCCCC---CcHHHHHHHHHHH
Confidence            589999999999999863122222234444432 6799999999987754   3343334444444

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07487 Peptidases_S8_1 Peptidase S8 family domain, uncharacterized subfamily 1

Probab=97.41  E-value=0.00023  Score=50.14  Aligned_cols=68  Identities=16%  Similarity=0.101  Sum_probs=43.7

Q ss_pred             ecccccCCCcceeeeeCCC---CCChHHHhhhhcCCC---CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          7 QHELLQISHDGRIRMLDQP---YMTDLIEANSMGHEP---NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g~---~vtd~~EA~Als~~~---~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      ..||||+++|--+|+++..   ..+++.+|.....+.   ..++|+++|||.....   ........+++.+..++|
T Consensus        65 ~~Giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~Iin~S~g~~~~~---~~~~~~~~~~~~~~~~~g  138 (264)
T cd07487          65 YKGVAPGANLVGVKVLDDSGSGSESDIIAGIDWVVENNEKYNIRVVNLSLGAPPDP---SYGEDPLCQAVERLWDAG  138 (264)
T ss_pred             eEEECCCCeEEEEEeecCCCCccHHHHHHHHHHHHhhccccCceEEEeccCCCCCC---CCCCCHHHHHHHHHHhCC
Confidence            5789999999999999863   123444443333332   2799999999987653   222233455666665554

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07494 Peptidases_S8_10 Peptidase S8 family domain, uncharacterized subfamily 10

Probab=97.36  E-value=0.00035  Score=52.19  Aligned_cols=69  Identities=13%  Similarity=0.095  Sum_probs=45.7

Q ss_pred             eecccccCCCcceeeeeCCCCCChHHHhhhhcCC-CCcceeEeCCCCCCCCCc------cccCchHHHHHHHHHHHhcC
Q psy13852          6 MQHELLQISHDGRIRMLDQPYMTDLIEANSMGHE-PNLIDIYSASWGPTDDGK------TVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         6 m~~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~-~~~idIYS~SWGP~DdG~------t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      ...|||++++|-.+|+++. ...++.+|  |.|. .+..||.|+|||...+..      .+........+|+++.+++|
T Consensus        70 ~i~GvAP~a~i~~vkv~~~-~~~~~~~a--i~~a~~~g~dVIn~SlG~~~~~~~~~~~~~~~~~~~al~~ai~~A~~~G  145 (298)
T cd07494          70 NLFAIAPGAQFIGVKLGGP-DLVNSVGA--FKKAISLSPDIISNSWGYDLRSPGTSWSRSLPNALKALAATLQDAVARG  145 (298)
T ss_pred             ceeEeCCCCeEEEEEccCC-CcHHHHHH--HHHHHhcCCCEEEeecccCCCCcccccccccchhhHHHHHHHHHHHHCC
Confidence            3579999999999999987 45555544  3333 268999999999743221      12222334556777776665

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07473 Peptidases_S8_Subtilisin_like Peptidase S8 family domain in Subtilisin-like proteins

Probab=97.34  E-value=0.00033  Score=49.52  Aligned_cols=62  Identities=19%  Similarity=0.184  Sum_probs=43.3

Q ss_pred             cccccCCCcceeeeeCCCC---CChHHHhhhhcCCCCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQPY---MTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~---vtd~~EA~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+|+|-.+|+++...   ..++.++-..-.. +.++|.++|||....       .....+++.+...+|
T Consensus        84 ~GvAp~a~l~~~~~~~~~~~~~~~~~~~a~~~a~~-~~~~vin~S~G~~~~-------~~~~~~~~~~~~~~g  148 (259)
T cd07473          84 AGVAWNVKIMPLKFLGADGSGTTSDAIKAIDYAVD-MGAKIINNSWGGGGP-------SQALRDAIARAIDAG  148 (259)
T ss_pred             EEeCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHH-CCCeEEEeCCCCCCC-------CHHHHHHHHHHHhCC
Confidence            6899999999999998832   2344444333233 689999999998654       344566777766654

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04843 Peptidases_S8_11 Peptidase S8 family domain, uncharacterized subfamily 11

Probab=97.31  E-value=0.00075  Score=50.01  Aligned_cols=75  Identities=12%  Similarity=0.077  Sum_probs=46.9

Q ss_pred             ceeeee------cccccCCCcceeeeeCCCCCChHHHhhhhcCC-CCcceeEeCCCCCCCCCcccc--CchHHHHHHHHH
Q psy13852          2 ATITMQ------HELLQISHDGRIRMLDQPYMTDLIEANSMGHE-PNLIDIYSASWGPTDDGKTVD--GPRNATMRAIVR   72 (78)
Q Consensus         2 ~~i~m~------~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~-~~~idIYS~SWGP~DdG~t~~--gP~~l~~~Al~~   72 (78)
                      |+|+.+      .||||+++|..+|+++...+.+.++ .|+.|. ...+.+.|.|||..++.....  .+.....+|+.+
T Consensus        59 GiIaa~~n~~G~~GvAp~a~l~~i~v~~~~~~~~ai~-~A~~~~~~~~v~~in~s~g~~~~~~~~~p~~~~~~~~~av~~  137 (277)
T cd04843          59 GIIVAKDNGIGVTGIAHGAQAAVVSSTRVSNTADAIL-DAADYLSPGDVILLEMQTGGPNNGYPPLPVEYEQANFDAIRT  137 (277)
T ss_pred             eeeeeecCCCceeeeccCCEEEEEEecCCCCHHHHHH-HHHhccCCCCEEEEEccccCCCcCcccCcchhhHHHHHHHHH
Confidence            567765      4899999999999996212333333 334442 345778899999987665432  122233457766


Q ss_pred             HHhcC
Q psy13852         73 GVNEH   77 (78)
Q Consensus        73 Gv~~G   77 (78)
                      ...+|
T Consensus       138 a~~~G  142 (277)
T cd04843         138 ATDLG  142 (277)
T ss_pred             HHhCC
Confidence            65555

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07482 Peptidases_S8_Lantibiotic_specific_protease Peptidase S8 family domain in Lantiobiotic (lanthionine-containing antibiotics) specific proteases

Probab=96.93  E-value=0.0015  Score=46.70  Aligned_cols=50  Identities=8%  Similarity=-0.156  Sum_probs=34.1

Q ss_pred             cccccCCCcceeeeeCCCCC-ChHHHhhhhcCC-CCcceeEeCCCCCCCCCc
Q psy13852          8 HELLQISHDGRIRMLDQPYM-TDLIEANSMGHE-PNLIDIYSASWGPTDDGK   57 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~v-td~~EA~Als~~-~~~idIYS~SWGP~DdG~   57 (78)
                      +||||+|+|-.+|+++.... +...-..++.+. .+.++|.++|||......
T Consensus        70 ~GvAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~vin~S~G~~~~~~  121 (294)
T cd07482          70 KGVAPGIGIVSYRVFGSCGSAESSWIIKAIIDAADDGVDVINLSLGGYLIIG  121 (294)
T ss_pred             ceeCCCCEEEEEEeecCCCCcCHHHHHHHHHHHHHCCCCEEEeCCccCCCCC
Confidence            58999999999999987311 222223444443 246999999999755443

Lantiobiotic (lanthionine-containing antibiotics) specific proteases are very similar in structure to serine proteases. Lantibiotics are ribosomally synthesised antimicrobial agents derived from ribosomally synthesised peptides with antimicrobial activities against Gram-positive bacteria. The proteases that cleave the N-terminal leader peptides from lantiobiotics include: epiP, nsuP, mutP, and nisP. EpiP, from Staphylococcus, is thought to cleave matured epidermin. NsuP, a dehydratase from Streptococcus and NisP, a membrane-anchored subtilisin-like serine protease from Lactococcus cleave nisin. MutP is highly similar to epiP and nisP and is thought to process the prepeptide mutacin III of S. mutans. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family h

>cd07480 Peptidases_S8_12 Peptidase S8 family domain, uncharacterized subfamily 12

Probab=96.87  E-value=0.0013  Score=48.23  Aligned_cols=51  Identities=16%  Similarity=-0.092  Sum_probs=36.5

Q ss_pred             cccccCCCcceeeeeCCC-CCChHHHhhhhcCCC-CcceeEeCCCCCCCCCcc
Q psy13852          8 HELLQISHDGRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKT   58 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t   58 (78)
                      .||||+|+|-.+|++.+. ...+..-++++.|.. +.++|+++|||...+|..
T Consensus        66 ~GvAp~a~i~~~~~~~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~  118 (297)
T cd07480          66 YGVARGAEIALIGKVLGDGGGGDGGILAGIQWAVANGADVISMSLGADFPGLV  118 (297)
T ss_pred             cccCCCCEEEEEEEEeCCCCCcHHHHHHHHHHHHHcCCCEEEeccCCCCcccc
Confidence            589999999999998652 122333345555543 467999999999887763

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07476 Peptidases_S8_thiazoline_oxidase_subtilisin-like_protease Peptidase S8 family domain in Thiazoline oxidase/subtilisin-like proteases

Probab=96.85  E-value=0.0017  Score=47.77  Aligned_cols=67  Identities=10%  Similarity=0.037  Sum_probs=46.2

Q ss_pred             cccccCCCcceeeeeCCC--CCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP--YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~--~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+++|--+|++...  ..+....+.++.|.. +.+||.++|||+...-   ..+.....+|+++..++|
T Consensus        69 ~GvAp~a~i~~~~v~~~~~~~~~~~~i~~ai~~a~~~g~~VIN~S~G~~~~~---~~~~~~l~~a~~~a~~~g  138 (267)
T cd07476          69 EGIAPLCRGLNIPIFAEDRRGCSQLDLARAINLALEQGAHIINISGGRLTQT---GEADPILANAVAMCQQNN  138 (267)
T ss_pred             eeECcCCeEEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEecCCcCCCC---CCCCHHHHHHHHHHHHCC
Confidence            489999999999998652  122345556777665 4699999999975421   123456677887776665

Thiazoline oxidase/subtilisin-like protease is produced by the symbiotic bacteria Prochloron spp. that inhabit didemnid family ascidians. The cyclic peptides of the patellamide class found in didemnid extracts are now known to be synthesized by the Prochloron spp. The prepatellamide is heterocyclized to form thiazole and oxazoline rings and the peptide is cleaved to form the two cyclic patellamides A and C. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution).

>cd07485 Peptidases_S8_Fervidolysin_like Peptidase S8 family domain in Fervidolysin

Probab=96.81  E-value=0.002  Score=46.55  Aligned_cols=70  Identities=19%  Similarity=0.086  Sum_probs=47.8

Q ss_pred             eeeeecccccCCCcceeeeeCCC-CCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhc
Q psy13852          3 TITMQHELLQISHDGRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE   76 (78)
Q Consensus         3 ~i~m~~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~   76 (78)
                      -|++.+|||+++++--+|+++.. ..++.....++.|.. +.++|.++|||......   - ....++|+...+++
T Consensus        83 ~i~~~~gvap~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~g~~~~~~---~-~~~~~~a~~~~~~~  154 (273)
T cd07485          83 GIAGAGGVAPGVKIMSIQIFAGRYYVGDDAVAAAIVYAADNGAVILQNSWGGTGGGI---Y-SPLLKDAFDYFIEN  154 (273)
T ss_pred             ccccccccCCCCEEEEEEEECCCCCccHHHHHHHHHHHHHcCCcEEEecCCCCCccc---c-CHHHHHHHHHHHHh
Confidence            36677889999999999999852 244555566666653 47999999999755311   1 23455666666555

Fervidolysin found in Fervidobacterium pennivorans is an extracellular subtilisin-like keratinase. It is contains a signal peptide, a propeptide, and a catalytic region. The tertiary structure of fervidolysin is similar to that of subtilisin. It contains a Asp/His/Ser catalytic triad and is a member of the peptidase S8 (subtilisin and kexin) family. The catalytic triad is similar to that found in trypsin-like proteases, but it does not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. Howev

>cd07498 Peptidases_S8_15 Peptidase S8 family domain, uncharacterized subfamily 15

Probab=96.79  E-value=0.0021  Score=45.11  Aligned_cols=65  Identities=22%  Similarity=0.133  Sum_probs=41.8

Q ss_pred             cccccCCCcceeeeeCCCC-CChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHh
Q psy13852          8 HELLQISHDGRIRMLDQPY-MTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVN   75 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~-vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~   75 (78)
                      .||||+++|-.+|+++... .+...-+.++.|.. +.++|.++|||..+...   .......+++.+..+
T Consensus        61 ~Gvap~a~i~~~~~~~~~~~~~~~~~~~ai~~a~~~~~~Vin~S~g~~~~~~---~~~~~~~~~~~~~~~  127 (242)
T cd07498          61 AGVAPGAKLMPVRIADSLGYAYWSDIAQAITWAADNGADVISNSWGGSDSTE---SISSAIDNAATYGRN  127 (242)
T ss_pred             EeECCCCEEEEEEEECCCCCccHHHHHHHHHHHHHCCCeEEEeccCCCCCCc---hHHHHHHHHHHHHhh
Confidence            4899999999999998731 13334445555543 57999999999865432   112233345555544

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07475 Peptidases_S8_C5a_Peptidase Peptidase S8 family domain in Streptococcal C5a peptidases

Probab=96.68  E-value=0.0024  Score=47.28  Aligned_cols=69  Identities=13%  Similarity=0.018  Sum_probs=45.4

Q ss_pred             eecccccCCCcceeeeeCC---CCCChHHHhhhhcCC-CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          6 MQHELLQISHDGRIRMLDQ---PYMTDLIEANSMGHE-PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         6 m~~gvAy~a~i~GIRmL~g---~~vtd~~EA~Als~~-~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      ..+||||+|+|-.+|+++.   ...++..-..++.+. .+.++|.++|||...+..   .+..+..+|+++...+|
T Consensus       104 ~~~GiAp~a~l~~~~v~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~---~~~~~~~~~~~~a~~~g  176 (346)
T cd07475         104 GIKGVAPEAQLLAMKVFSNPEGGSTYDDAYAKAIEDAVKLGADVINMSLGSTAGFV---DLDDPEQQAIKRAREAG  176 (346)
T ss_pred             ceEEeCCCCeEEEEEeecCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCC---CCCCHHHHHHHHHhhCC
Confidence            4579999999999999973   123333333344333 247899999999865432   44455667777766655

Streptococcal C5a peptidase (SCP), is a highly specific protease and adhesin/invasin. The subtilisin-like protease domain is located at the N-terminus and contains a protease-associated domain inserted into a loop. There are three fibronectin type III (Fn) domains at the C-terminus. SCP binds to integrins with the help of Arg-Gly-Asp motifs which are thought to stabilize conformational changes required for substrate binding. Peptidases S8 or Subtilases are a serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intr

>cd07492 Peptidases_S8_8 Peptidase S8 family domain, uncharacterized subfamily 8

Probab=96.59  E-value=0.0046  Score=43.07  Aligned_cols=64  Identities=14%  Similarity=0.090  Sum_probs=43.1

Q ss_pred             ccccCCCcceeeeeCCCC-CChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          9 ELLQISHDGRIRMLDQPY-MTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         9 gvAy~a~i~GIRmL~g~~-vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      +.+++++|..+|+++... .+...-..++.|.. +.+||+++|||...+.     +....++++.+..++|
T Consensus        56 ~~~p~~~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~v~Vin~S~G~~~~~-----~~~~~~~~~~~a~~~g  121 (222)
T cd07492          56 KYAPEAEIGSIKILGEDGRCNSFVLEKALRACVENDIRIVNLSLGGPGDR-----DFPLLKELLEYAYKAG  121 (222)
T ss_pred             ccCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCCC-----cCHHHHHHHHHHHHCC
Confidence            467899999999998731 23333445666664 6899999999986653     3344556666655543

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd04077 Peptidases_S8_PCSK9_ProteinaseK_like Peptidase S8 family domain in ProteinaseK-like proteins

Probab=96.51  E-value=0.0053  Score=43.61  Aligned_cols=63  Identities=16%  Similarity=0.008  Sum_probs=41.6

Q ss_pred             ecccccCCCcceeeeeCCC-CCChHHHhhhhcCCCC------cceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          7 QHELLQISHDGRIRMLDQP-YMTDLIEANSMGHEPN------LIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~~------~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      ..||||+++|-.+|+++.. ..+......++.|..+      .++|.++|||-..        .....+++.+..++|
T Consensus        77 ~~GvAp~a~i~~~~i~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~iin~S~g~~~--------~~~~~~~~~~~~~~g  146 (255)
T cd04077          77 TYGVAKKANLVAVKVLDCNGSGTLSGIIAGLEWVANDATKRGKPAVANMSLGGGA--------STALDAAVAAAVNAG  146 (255)
T ss_pred             ccCcCCCCeEEEEEEeCCCCCcCHHHHHHHHHHHHhcccccCCCeEEEeCCCCCC--------CHHHHHHHHHHHHCC
Confidence            3689999999999999873 2333444455555433      4799999999532        334445666655544

The peptidase S8 or Subtilase clan of proteases have a Asp/His/Ser catalytic triad that is not homologous to trypsin. This CD contains several members of this clan including: PCSK9 (Proprotein convertase subtilisin/kexin type 9), Proteinase_K, Proteinase_T, and other subtilisin-like serine proteases. PCSK9 posttranslationally regulates hepatic low-density lipoprotein receptors (LDLRs) by binding to LDLRs on the cell surface, leading to their degradation. The binding site of PCSK9 has been localized to the epidermal growth factor-like repeat A (EGF-A) domain of the LDLR. Characterized Proteinases K are secreted endopeptidases with a high degree of sequence conservation. Proteinases K are not substrate-specific and function in a wide variety of species in different pathways. It can hydrolyze keratin and other proteins with subtilisin-like specificity. The number of calcium-binding moti

>cd05561 Peptidases_S8_4 Peptidase S8 family domain, uncharacterized subfamily 4

Probab=96.39  E-value=0.0057  Score=43.96  Aligned_cols=62  Identities=10%  Similarity=0.013  Sum_probs=41.9

Q ss_pred             cccccCCCcceeeeeCCC----CCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP----YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~----~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .|||++++|-.+|+++..    ..+...-++++.|.. +.++|.++|||-+++        ....+|+++..++|
T Consensus        54 ~Gvap~a~i~~~~v~~~~~~~~~~~~~~i~~ai~~a~~~g~~VIn~S~g~~~~--------~~l~~ai~~a~~~g  120 (239)
T cd05561          54 PGLLPGADLYGADVFGRAGGGEGASALALARALDWLAEQGVRVVNISLAGPPN--------ALLAAAVAAAAARG  120 (239)
T ss_pred             cccCCCCEEEEEEEecCCCCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC--------HHHHHHHHHHHHCC
Confidence            489999999999999852    123333346666653 589999999984332        34456666666554

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07484 Peptidases_S8_Thermitase_like Peptidase S8 family domain in Thermitase-like proteins

Probab=96.38  E-value=0.0053  Score=43.62  Aligned_cols=61  Identities=15%  Similarity=0.084  Sum_probs=41.2

Q ss_pred             cccccCCCcceeeeeCCCC---CChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQPY---MTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~---vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .|+|++++|-.+|+++...   ..++.+  ++.+.. +.++|.+.|||...       +..+..++++...++|
T Consensus        89 ~Giap~a~l~~~~v~~~~~~~~~~~~~~--ai~~a~~~~~~iin~S~g~~~-------~~~~~~~~~~~a~~~g  153 (260)
T cd07484          89 AGVAPKAKIMPVKVLDANGSGSLADIAN--GIRYAADKGAKVINLSLGGGL-------GSTALQEAINYAWNKG  153 (260)
T ss_pred             EeECCCCEEEEEEEECCCCCcCHHHHHH--HHHHHHHCCCeEEEecCCCCC-------CCHHHHHHHHHHHHCC
Confidence            5899999999999998631   233333  344432 46899999999865       3445566666655554

Thermitase is a non-specific, trypsin-related serine protease with a very high specific activity. It contains a subtilisin like domain. The tertiary structure of thermitase is similar to that of subtilisin BPN'. It contains a Asp/His/Ser catalytic triad. Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) clan include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid

>cd07489 Peptidases_S8_5 Peptidase S8 family domain, uncharacterized subfamily 5

Probab=96.23  E-value=0.0039  Score=45.84  Aligned_cols=48  Identities=15%  Similarity=0.074  Sum_probs=33.5

Q ss_pred             ecccccCCCcceeeeeCCC-CCChHHHhhhhcCC-CCcceeEeCCCCCCC
Q psy13852          7 QHELLQISHDGRIRMLDQP-YMTDLIEANSMGHE-PNLIDIYSASWGPTD   54 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~-~~~idIYS~SWGP~D   54 (78)
                      .+||||+|+|-.+|+++.. ..+...-+.++.+. .+.++|.++|||...
T Consensus        87 ~~GiAp~a~i~~~~v~~~~~~~~~~~~~~ai~~a~~~~~~iIn~S~g~~~  136 (312)
T cd07489          87 FTGVAPEATLGAYRVFGCSGSTTEDTIIAAFLRAYEDGADVITASLGGPS  136 (312)
T ss_pred             eEEECCCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCEEEeCCCcCC
Confidence            3589999999999999732 22333334455444 357999999999643

gap in seq This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07491 Peptidases_S8_7 Peptidase S8 family domain, uncharacterized subfamily 7

Probab=96.13  E-value=0.0071  Score=44.08  Aligned_cols=69  Identities=20%  Similarity=0.221  Sum_probs=46.2

Q ss_pred             cccccCCCcceeeeeCCCC-------CChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQPY-------MTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~-------vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .|||++++|-.+|+++...       .+...-+.|+.|.. +.+||.++|||....- ....-....++|+.+..++|
T Consensus        60 ~gvap~a~i~~~kv~~~~~~~~~~~~~~~~~i~~Ai~~Ai~~gadIIn~S~g~~~~~-~~~~~~~~l~~ai~~A~~~G  136 (247)
T cd07491          60 CRICPSAKLYVIKLEDRPSPDSNKRSITPQSAAKAIEAAVEKKVDIISMSWTIKKPE-DNDNDINELENAIKEALDRG  136 (247)
T ss_pred             HHHCCCCeEEEEEecccCCCCCcccccCHHHHHHHHHHHHHCCCcEEEeeeeccccc-ccccchHHHHHHHHHHHhCC
Confidence            3799999999999998621       23334467777764 5899999999964321 11222445566777776665

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>cd07479 Peptidases_S8_SKI-1_like Peptidase S8 family domain in SKI-1-like proteins

Probab=96.11  E-value=0.0097  Score=43.21  Aligned_cols=47  Identities=13%  Similarity=0.058  Sum_probs=34.3

Q ss_pred             cccccCCCcceeeeeCCCCCC-hHHHhhhhcCC-CCcceeEeCCCCCCC
Q psy13852          8 HELLQISHDGRIRMLDQPYMT-DLIEANSMGHE-PNLIDIYSASWGPTD   54 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~vt-d~~EA~Als~~-~~~idIYS~SWGP~D   54 (78)
                      .||||+++|-.+|+++..... ...-..++.|. .+.+||.++|||..+
T Consensus        63 ~GvAp~a~l~~~~v~~~~~~~~~~~~~~a~~~a~~~~~~Vin~S~G~~~  111 (255)
T cd07479          63 LGFAPDAEIYIFRVFTNNQVSYTSWFLDAFNYAILTKIDVLNLSIGGPD  111 (255)
T ss_pred             eeECCCCEEEEEEeecCCCCchHHHHHHHHHhhhhcCCCEEEeeccCCC
Confidence            589999999999999763221 12234566665 358999999999654

SKI-1 (type I membrane-bound subtilisin-kexin-isoenzyme) proteins are secretory Ca2+-dependent serine proteinases cleave at nonbasic residues: Thr, Leu, and Lys. SKI-1s play a critical role in the regulation of the synthesis and metabolism of cholesterol and fatty acid metabolism. Members of the peptidases S8 and S35 clan include endopeptidases, exopeptidases and also a tripeptidyl-peptidase. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The S53 family contains a catalytic triad Glu/Asp/Ser. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme tem

>cd07477 Peptidases_S8_Subtilisin_subset Peptidase S8 family domain in Subtilisin proteins

Probab=96.10  E-value=0.0099  Score=41.07  Aligned_cols=63  Identities=21%  Similarity=0.182  Sum_probs=40.6

Q ss_pred             ecccccCCCcceeeeeCCCC---CChHHHhhhhcCCCCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          7 QHELLQISHDGRIRMLDQPY---MTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g~~---vtd~~EA~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .+||||+++|-.+|+++...   ..++.++-..-.+ +.++|.++|||..+..       ....+++....++|
T Consensus        59 ~~giap~a~i~~~~~~~~~~~~~~~~l~~ai~~a~~-~~~~Vin~S~g~~~~~-------~~~~~~~~~a~~~g  124 (229)
T cd07477          59 VVGVAPEADLYAVKVLNDDGSGTYSDIIAGIEWAIE-NGMDIINMSLGGPSDS-------PALREAIKKAYAAG  124 (229)
T ss_pred             cEeeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHH-CCCCEEEECCccCCCC-------HHHHHHHHHHHHCC
Confidence            46899999999999998631   1234433322223 4699999999975432       33455666655554

This group is composed of many different subtilisins: Pro-TK-subtilisin, subtilisin Carlsberg, serine protease Pb92 subtilisin, and BPN subtilisins just to name a few. Pro-TK-subtilisin is a serine protease from the hyperthermophilic archaeon Thermococcus kodakaraensis and consists of a signal peptide, a propeptide, and a mature domain. TK-subtilisin is matured from pro-TK-subtilisin upon autoprocessing and degradation of the propeptide. Unlike other subtilisins though, the folding of the unprocessed form of pro-TK-subtilisin is induced by Ca2+ binding which is almost completed prior to autoprocessing. Ca2+ is required for activity unlike the bacterial subtilisins. The propeptide is not required for folding of the mature domain unlike the bacterial subtilases because of the stability produced from Ca2+ binding. Subtilisin Carlsberg is extremely similar in structure to subtilisin BPN'/Novo thoug

>cd00306 Peptidases_S8_S53 Peptidase domain in the S8 and S53 families

Probab=95.54  E-value=0.036  Score=37.03  Aligned_cols=64  Identities=16%  Similarity=0.053  Sum_probs=42.5

Q ss_pred             cccccCCCcceeeeeCCCC-CChHHHhhhhcCC--CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhc
Q psy13852          8 HELLQISHDGRIRMLDQPY-MTDLIEANSMGHE--PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE   76 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~-vtd~~EA~Als~~--~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~   76 (78)
                      .|+|++++|.-+|+++... .....-..++.+.  .+.++|.++|||.....     +.....+++.+..++
T Consensus        64 ~g~a~~a~i~~~~~~~~~~~~~~~~~~~ai~~~~~~~~~~iin~S~g~~~~~-----~~~~~~~~~~~~~~~  130 (241)
T cd00306          64 VGVAPGAKLIPVKVLDGDGSGSSSDIAAAIDYAAADQGADVINLSLGGPGSP-----PSSALSEAIDYALAK  130 (241)
T ss_pred             EEeCCCCEEEEEEEecCCCCcCHHHHHHHHHHHHhccCCCEEEeCCCCCCCC-----CCHHHHHHHHHHHHh
Confidence            4789999999999998731 1333334555554  47899999999986544     344445555554443

Members of the peptidases S8 (subtilisin and kexin) and S53 (sedolisin) family include endopeptidases and exopeptidases. The S8 family has an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. Serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of subtilisin. The serine residue here is the nucleophilic equivalent of the serine residue in the S8 family, while glutamic acid has the same role here as the histidine base. However, the aspartic acid residue that acts as an electrophile is quite different. In S53, it follows glutamic acid, while in S8 it precedes histidine. The stability of these enzymes may be enhanced by calcium; some members hav

>PTZ00262 subtilisin-like protease; Provisional

Probab=95.46  E-value=0.024  Score=47.81  Aligned_cols=63  Identities=6%  Similarity=-0.197  Sum_probs=42.7

Q ss_pred             cccccCCCcceeeeeCCC-CCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+|+|-.+|+|+.. .-+...-+.|+.|.- +.++|.++|||-..       ......+|+.+..++|
T Consensus       399 ~GVAP~AkLi~vKVld~~G~G~~sdI~~AI~yA~~~GA~VINmSlG~~~-------~s~~l~~AV~~A~~kG  463 (639)
T PTZ00262        399 VGVDKRSKLIICKALDSHKLGRLGDMFKCFDYCISREAHMINGSFSFDE-------YSGIFNESVKYLEEKG  463 (639)
T ss_pred             eeeecccccceEEEecCCCCccHHHHHHHHHHHHHCCCCEEEeccccCC-------ccHHHHHHHHHHHHCC
Confidence            589999999999999852 122233345666652 57899999998432       2334567777776665

>cd04842 Peptidases_S8_Kp43_protease Peptidase S8 family domain in Kp43 proteases

Probab=95.45  E-value=0.032  Score=39.98  Aligned_cols=49  Identities=16%  Similarity=0.045  Sum_probs=33.8

Q ss_pred             eecccccCCCcceeeeeCCCC----CChHHHhhhhcCCC-CcceeEeCCCCCCCCC
Q psy13852          6 MQHELLQISHDGRIRMLDQPY----MTDLIEANSMGHEP-NLIDIYSASWGPTDDG   56 (78)
Q Consensus         6 m~~gvAy~a~i~GIRmL~g~~----vtd~~EA~Als~~~-~~idIYS~SWGP~DdG   56 (78)
                      ..+||||+++|-.+|+++...    ..+..  .++.+.. +.++|.++|||.....
T Consensus        76 ~~~GvAp~a~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~Vin~S~G~~~~~  129 (293)
T cd04842          76 LYKGVAPKAKLYFQDIGDTSGNLSSPPDLN--KLFSPMYDAGARISSNSWGSPVNN  129 (293)
T ss_pred             ccccccccCeEEEEEeeccCccccCCccHH--HHHHHHHHhCCEEEeccCCCCCcc
Confidence            468999999999999998731    12233  3333332 3489999999986543

Kp43 proteases are members of the peptidase S8 or Subtilase clan of proteases. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Kp43 is topologically similar to kexin and furin both of which are proprotein convertases, but differ in amino acids sequence and the position of its C-terminal barrel. Kp43 has 3 Ca2+ binding sites that differ from the corresponding sites in the other known subtilisin-like proteases. KP-43 protease is known to be an oxidation-resistant protease when compared with the other subtilisin-like proteases

>cd04852 Peptidases_S8_3 Peptidase S8 family domain, uncharacterized subfamily 3

Probab=95.43  E-value=0.028  Score=41.31  Aligned_cols=48  Identities=8%  Similarity=-0.072  Sum_probs=33.2

Q ss_pred             ecccccCCCcceeeeeCC-CCCChHHHhhhhcCC-CCcceeEeCCCCCCC
Q psy13852          7 QHELLQISHDGRIRMLDQ-PYMTDLIEANSMGHE-PNLIDIYSASWGPTD   54 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g-~~vtd~~EA~Als~~-~~~idIYS~SWGP~D   54 (78)
                      .+||||+++|-.+|+++. ...+...-..++.|. .+.++|.+.|||...
T Consensus       136 ~~GvAP~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~  185 (307)
T cd04852         136 ASGVAPRARIAVYKVCWPDGGCFGSDILAAIDQAIADGVDVISYSIGGGS  185 (307)
T ss_pred             EEEECCCCeEEEEEEecCCCCccHHHHHHHHHHHHHcCCCEEEeCCCCCC
Confidence            469999999999999986 122222222444443 257899999999754

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

>PF00082 Peptidase_S8: Subtilase family This is family S8 in the peptidase classification

Probab=95.32  E-value=0.0074  Score=42.61  Aligned_cols=47  Identities=11%  Similarity=0.087  Sum_probs=34.2

Q ss_pred             cccccCCCcceeeeeCCCCCChHHHhhhhcCC--CCcceeEeCCCCCCC
Q psy13852          8 HELLQISHDGRIRMLDQPYMTDLIEANSMGHE--PNLIDIYSASWGPTD   54 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~--~~~idIYS~SWGP~D   54 (78)
                      .|||++++|-.+|+++....+...-..++.+.  .+.++|++.|||+.+
T Consensus        68 ~Gva~~a~l~~~~i~~~~~~~~~~~~~ai~~~~~~~~~~Vin~S~G~~~  116 (282)
T PF00082_consen   68 NGVAPNAKLYSYKIFDNSGGTSSDLIEAIEYAVKNDGVDVINLSFGSNS  116 (282)
T ss_dssp             TCSSTTSEEEEEECSSTTSEEHHHHHHHHHHHHHHTTSSEEEECEEBEE
T ss_pred             ccccccccccccccccccccccccccchhhhhhhccCCccccccccccc
Confidence            78999999999999887322222233455554  367899999999954

; InterPro: IPR000209 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase families S8 (subfamilies S8A (subtilisin) and S8B (kexin)) and S53 (sedolisin) both of which are members of clan SB. The subtilisin family is the second largest serine protease family characterised to date. Over 200 subtilises are presently known, more than 170 of which with their complete amino acid sequence []. It is widespread, being found in eubacteria, archaebacteria, eukaryotes and viruses []. The vast majority of the family are endopeptidases, although there is an exopeptidase, tripeptidyl peptidase [, ]. Structures have been determined for several members of the subtilisin family: they exploit the same catalytic triad as the chymotrypsins, although the residues occur in a different order (HDS in chymotrypsin and DHS in subtilisin), but the structures show no other similarity [, ]. Some subtilisins are mosaic proteins, while others contain N- and C-terminal extensions that show no sequence similarity to any other known protein []. Based on sequence homology, a subdivision into six families has been proposed []. The proprotein-processing endopeptidases kexin, furin and related enzymes form a distinct subfamily known as the kexin subfamily (S8B). These preferentially cleave C-terminally to paired basic amino acids. Members of this subfamily can be identified by subtly different motifs around the active site [, ]. Members of the kexin family, along with endopeptidases R, T and K from the yeast Tritirachium and cuticle-degrading peptidase from Metarhizium, require thiol activation. This can be attributed to the presence of Cys-173 near to the active histidine [].Only 1 viral member of the subtilisin family is known, a 56kDa protease from herpes virus 1, which infects the channel catfish []. Sedolisins (serine-carboxyl peptidases) are proteolytic enzymes whose fold resembles that of subtilisin; however, they are considerably larger, with the mature catalytic domains containing approximately 375 amino acids. The defining features of these enzymes are a unique catalytic triad, Ser-Glu-Asp, as well as the presence of an aspartic acid residue in the oxyanion hole. High-resolution crystal structures have now been solved for sedolisin from Pseudomonas sp. 101, as well as for kumamolisin from a thermophilic bacterium, Bacillus sp. MN-32. Mutations in the human gene leads to a fatal neurodegenerative disease []. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 3EIF_A 1XF1_B 3F7M_A 3F7O_B 2QTW_B 2W2O_A 3GCX_A 3P5B_A 3M0C_B 2XTJ_A ....

>cd04056 Peptidases_S53 Peptidase domain in the S53 family

Probab=94.58  E-value=0.043  Score=41.94  Aligned_cols=70  Identities=11%  Similarity=0.113  Sum_probs=45.0

Q ss_pred             eeeecccccCCCcceeeeeCCCCCChHHHh--hhhcCCCCcceeEeCCCCCCCCCccccCch--HHHHHHHHHHHhcC
Q psy13852          4 ITMQHELLQISHDGRIRMLDQPYMTDLIEA--NSMGHEPNLIDIYSASWGPTDDGKTVDGPR--NATMRAIVRGVNEH   77 (78)
Q Consensus         4 i~m~~gvAy~a~i~GIRmL~g~~vtd~~EA--~Als~~~~~idIYS~SWGP~DdG~t~~gP~--~l~~~Al~~Gv~~G   77 (78)
                      |-+.||||++++|--++..+. ..++...+  .++....+..+|-|+|||-...-.   .+.  ....+++++...+|
T Consensus        80 v~~~~gvAP~a~i~~~~~~~~-~~~~~~~a~~~ai~~~~~~~~VIS~S~G~~e~~~---~~~~~~~~~~~~~~a~~~G  153 (361)
T cd04056          80 VEYAGAIAPGANITLYFAPGT-VTNGPLLAFLAAVLDNPNLPSVISISYGEPEQSL---PPAYAQRVCNLFAQAAAQG  153 (361)
T ss_pred             HHHHHhccCCCeEEEEEECCc-CccHHHHHHHHHHHcCCCCCCEEEccCCcccccc---CHHHHHHHHHHHHHHHhCC
Confidence            346799999999999999876 23444433  334444468999999999654321   122  22335666666655

Members of the peptidases S53 (sedolisin) family include endopeptidases and exopeptidases sedolisin, kumamolysin, and (PSCP) Pepstatin-insensitive Carboxyl Proteinase. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-

>cd05562 Peptidases_S53_like Peptidase domain in the S53 family

Probab=91.54  E-value=0.28  Score=36.34  Aligned_cols=41  Identities=12%  Similarity=-0.022  Sum_probs=30.4

Q ss_pred             cccccCCCcceeeeeCCCCCChHHHhhhhcCC-CCcceeEeCCCCC
Q psy13852          8 HELLQISHDGRIRMLDQPYMTDLIEANSMGHE-PNLIDIYSASWGP   52 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~-~~~idIYS~SWGP   52 (78)
                      .|||++++|--.|...+  ..++.  .++.|. .+.++|-+.|||-
T Consensus        59 ~GvAP~a~l~~~~~~~~--~~~i~--~ai~~a~~~g~~Vin~S~g~  100 (275)
T cd05562          59 HDIAPGAELAFHTAGGG--ELDFA--AAIRALAAAGADIIVDDIGY  100 (275)
T ss_pred             hccCCCCEEEEEecCCC--HHHHH--HHHHHHHHcCCCEEEecccc
Confidence            59999999998887654  44554  445554 2589999999984

Members of the peptidase S53 (sedolisin) family include endopeptidases and exopeptidases. The S53 family contains a catalytic triad Glu/Asp/Ser with an additional acidic residue Asp in the oxyanion hole, similar to that of Asn in subtilisin. The stability of these enzymes may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values. Characterized sedolisins include Kumamolisin, an extracellular calcium-dependent thermostable endopeptidase from Bacillus. The enzyme is synthesized with a 188 amino acid N-terminal preprotein region which is cleaved after the extraction into the extracellular space with low pH. One kumamolysin paralog, kumamolisin-As, is believed to be a collagenase. TPP1 is a serine protease that functi

>cd04857 Peptidases_S8_Tripeptidyl_Aminopeptidase_II Peptidase S8 family domain in Tripeptidyl aminopeptidases_II

Probab=89.86  E-value=0.26  Score=39.44  Aligned_cols=42  Identities=17%  Similarity=0.184  Sum_probs=29.8

Q ss_pred             cccccCCCcceeeeeCCCCCC------hHHHhhhhcCCC-CcceeEeCCCCC
Q psy13852          8 HELLQISHDGRIRMLDQPYMT------DLIEANSMGHEP-NLIDIYSASWGP   52 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~vt------d~~EA~Als~~~-~~idIYS~SWGP   52 (78)
                      .||||+|+|-.+|+++.. ..      ++.+  ++.+.. ..+||.++|||-
T Consensus       206 ~GVAP~A~I~svkv~d~~-~gs~~t~~~l~~--ai~~ai~~gadVIN~SlG~  254 (412)
T cd04857         206 NGVAPGAQIVSIKIGDTR-LGSMETGTALVR--AMIAAIETKCDLINMSYGE  254 (412)
T ss_pred             EEecCCCeEEEEEeccCC-CCCccchHHHHH--HHHHHHHcCCCEEEecCCc
Confidence            589999999999998762 21      2333  333332 479999999994

Tripeptidyl aminopeptidases II are member of the peptidase S8 or Subtilase family. Subtilases, or subtilisin-like serine proteases, have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure (an example of convergent evolution). Tripeptidyl aminopeptidase II removes tripeptides from the free N terminus of oligopeptides as well as having endoproteolytic activity. Some tripeptidyl aminopeptidases have been shown to cleave tripeptides and small peptides, e.g. angiotensin II and glucagon, while others are believed to be involved in MHC I processing.

>cd04847 Peptidases_S8_Subtilisin_like_2 Peptidase S8 family domain in Subtilisin-like proteins

Probab=85.49  E-value=0.64  Score=33.82  Aligned_cols=49  Identities=12%  Similarity=0.125  Sum_probs=32.0

Q ss_pred             ecccccCCCcceeeeeCCC-----CCC--hHHHhh--hhcCCCCcceeEeCCCCCCCC
Q psy13852          7 QHELLQISHDGRIRMLDQP-----YMT--DLIEAN--SMGHEPNLIDIYSASWGPTDD   55 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g~-----~vt--d~~EA~--Als~~~~~idIYS~SWGP~Dd   55 (78)
                      ..|||++++|-.+|+|+..     ..+  ++.+|-  ++..+.+.++|.+.|||-...
T Consensus        58 ~~gvap~~~l~~~kv~~~~g~~~~~~~~~~~~~ai~~a~~~~~~~~~ViN~SlG~~~~  115 (291)
T cd04847          58 NGLPRPGCRLESVRVLPPNGENDPELYGDITLRAIRRAVIQNPDIVRVFNLSLGSPLP  115 (291)
T ss_pred             CCCcccceEEEEEEEcCCCCCCCccChHHHHHHHHHHHHHhCCCceeEEEEecCCCCC
Confidence            3579999999999999872     011  233231  222223446999999997654

This family is a member of the Peptidases S8 or Subtilases serine endo- and exo-peptidase clan. They have an Asp/His/Ser catalytic triad similar to that found in trypsin-like proteases, but do not share their three-dimensional structure and are not homologous to trypsin. The stability of subtilases may be enhanced by calcium, some members have been shown to bind up to 4 ions via binding sites with different affinity. Some members of this clan contain disulfide bonds. These enzymes can be intra- and extracellular, some function at extreme temperatures and pH values.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	78
1p8j_A	471	Crystal Structure Of The Proprotein Convertase Furi		3e-13
1r64_A	481	The 2.2 A Crystal Structure Of Kex2 Protease In Com		9e-07
1ot5_A	477	The 2.4 Angstrom Crystal Sructure Of Kex2 In Comple		9e-07
2id4_A	503	The 1.9 A Structure Of Kex2 In Complex With An Ac-R		1e-06

>pdb|1P8J|A Chain A, Crystal Structure Of The Proprotein Convertase Furin Length = 471

Iteration: 1
 Score = 70.1 bits (170), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 17  GRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           G +RMLD   +TD +EA S+G  PN I IYSASWGP DDGKTVDGP      A  RGV++
Sbjct: 115 GGVRMLDGE-VTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQ 173

>pdb|1R64|A Chain A, The 2.2 A Crystal Structure Of Kex2 Protease In Complex With Ac-Arg- Glu-Lys-Boroarg Peptidyl Boronic Acid Inhibitor Length = 481

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 19  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           IR+L     T+  EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+GV E
Sbjct: 123 IRILSGDITTE-DEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTE 179

>pdb|1OT5|A Chain A, The 2.4 Angstrom Crystal Sructure Of Kex2 In Complex With A Peptidyl- Boronic Acid Inhibitor Length = 477

Iteration: 1
 Score = 48.5 bits (114), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 19  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           IR+L     T+  EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+GV E
Sbjct: 121 IRILSGDITTE-DEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTE 177

>pdb|2ID4|A Chain A, The 1.9 A Structure Of Kex2 In Complex With An Ac-R-E-R-K-Chloromethyl Ketone Inhibitor. Length = 503

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 19  IRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           IR+L     T+  EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+GV E
Sbjct: 130 IRILSGDITTE-DEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTE 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	78
1p8j_A	471	Furin precursor; prohormone convertase, SPC1, PACE	9e-13
2id4_A	503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	2e-12
2oxa_A	600	Extracellular serine protease; kexin, hydrolase; 1	2e-06

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1 Length = 471

 Score = 60.5 bits (146), Expect = 9e-13
 Identities = 35/62 (56%), Positives = 42/62 (67%), Gaps = 1/62 (1%)

Query: 17  GRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
           G +RMLD   +TD +EA S+G  PN I IYSASWGP DDGKTVDGP      A  RGV++
Sbjct: 115 GGVRMLDG-EVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQ 173

Query: 77  HQ 78
            +
Sbjct: 174 GR 175

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A* Length = 503

 Score = 59.3 bits (143), Expect = 2e-12
 Identities = 25/65 (38%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 14  SHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRG 73
           +    IR+L    +T   EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+G
Sbjct: 125 AKISGIRILSGD-ITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKG 183

Query: 74  VNEHQ 78
           V E +
Sbjct: 184 VTEGR 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	78
2id4_A	503	Kexin; KEX2, kexin, furin, proprotein, prohormone,	99.29
1p8j_A	471	Furin precursor; prohormone convertase, SPC1, PACE	99.29
3hjr_A	600	Extracellular serine protease; kexin, hydrolase; 1	98.38
2oxa_A	600	Extracellular serine protease; kexin, hydrolase; 1	97.99
3lxu_X	1354	Tripeptidyl-peptidase 2; spindle complex, aminopep	97.42
2iy9_A	347	SUBA; toxin, shiga, plasmid; 1.8A {Escherichia col	97.19
3t41_A	471	Epidermin leader peptide processing serine protea;	97.17
1gci_A	269	Subtilisin; hydrolase, serine protease; 0.78A {Bac	97.14
3i6s_A	649	Subtilisin-like protease; PA-domain, FN3-domain, h	97.06
2b6n_A	278	Proteinase K; S binding, substrate specificity, pr	96.97
1r6v_A	671	Subtilisin-like serine protease; sandwich domain,	96.94
3zxy_A	282	Subtilisin-like protein; hydrolase; 1.58A {Prochlo	96.88
3lpc_A	340	APRB2; protease, subtilase, virulence factor, hydr	96.83
1sh7_A	284	Extracellular subtilisin-like serine proteinase; c	96.83
1dbi_A	280	AK.1 serine protease; hydrolase; 1.80A {Bacillus S	96.81
2pwa_A	279	Proteinase K; structure, alanine boronic acid, hyd	96.62
2ixt_A	310	36KDA protease; serine protease, sphericase, subti	96.62
1r0r_E	274	Subtilisin carlsberg; high resolution, serine prot	96.55
1to2_E	281	Subtilisin BPN'; serine protease, hydrolase; HET:	96.53
2x8j_A	327	Intracellular subtilisin protease; hydrolase, seri	96.5
1thm_A	279	Thermitase; hydrolase(serine protease); 1.37A {The	96.48
3f7m_A	279	Alkaline serine protease VER112; verticillium psal	96.41
4dzt_A	276	Aqualysin-1, aqualysin-I; serine protease, calcium	96.33
2z2z_A	395	TK-subtilisin precursor; thermococcus kodakaraensi	96.28
3afg_A	539	Subtilisin-like serine protease; propeptide, therm	96.26
2z30_A	320	TK-subtilisin; thermococcus kodakaraensis, hydrola	96.22
1y9z_A	441	Alkaline serine protease; subtilisin-like alpha/be	96.18
4h6x_A	357	Thiazoline oxidase/subtilisin-like protease; hydro	95.82
4h6w_A	306	N-terminal cyanobactin protease; hydrolase; 2.45A	95.64
1xf1_A	926	C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {St	95.16
2qtw_B	546	Proprotein convertase subtilisin/kexin type 9; cor	95.14
1wmd_A	434	Protease; alpha-beta hydrolase fold, jelly-roll be	94.69
2p4e_P	692	Proprotein convertase subtilisin/kexin type 9; pro	94.27
3vta_A	621	Cucumisin; subtilisin-like fold, serine protease,	93.21
1t1e_A	552	Kumamolisin; proenzyme, prosubtilase, activation m	80.72

>2id4_A Kexin; KEX2, kexin, furin, proprotein, prohormone, convertase, SUBT like protease, serine protease; HET: NDG; 1.90A {Saccharomyces cerevisiae} SCOP: b.18.1.20 c.41.1.1 PDB: 1r64_A* 1ot5_A*

Probab=99.29  E-value=1.3e-12  Score=101.07  Aligned_cols=69  Identities=36%  Similarity=0.540  Sum_probs=64.6

Q ss_pred             cccccCCCcceeeeeCCCCCChHHHhhhhcCCCCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+|+|.++|++++ ..++..++.++.|..+..||+|+|||+.++++++++|..+..+|+.+++++|
T Consensus       119 ~GvAp~a~i~~~rv~~~-~~~~~~~~~ai~~a~~~~~Iin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~  187 (503)
T 2id4_A          119 VGVGYNAKISGIRILSG-DITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTEG  187 (503)
T ss_dssp             CCTTTTSEEEEEECTTS-CCCHHHHHHHTTTTTTTCSEEEECEESCCSSSCCBCCCHHHHHHHHHHHHHH
T ss_pred             EEECCCCEEEEEEeeCC-CCChHHHHHHHHhHhhcCCEEEeCCCcCCCCccccCchHHHHHHHHHHHHhc
Confidence            58999999999999999 5899999999999999899999999999999999999999999999998753

>1p8j_A Furin precursor; prohormone convertase, SPC1, PACE, P-domain; HET: DKA AR7 NAG FUL BMA MAN GAL FUC; 2.60A {Mus musculus} SCOP: b.18.1.20 c.41.1.1

Probab=99.29  E-value=2e-12  Score=99.11  Aligned_cols=69  Identities=51%  Similarity=0.788  Sum_probs=64.4

Q ss_pred             cccccCCCcceeeeeCCCCCChHHHhhhhcCCCCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+|+|.++|+|++ ..+|+.+|..+.++++.+||+|+|||+.++++++++|..+..+|+.++++++
T Consensus       106 ~GvAp~a~i~~~rv~~g-~~~~~~~ai~~a~~~~~~~Vin~S~G~~~~~~~~~~~~~~~~~a~~~a~~~~  174 (471)
T 1p8j_A          106 VGVAYNARIGGVRMLDG-EVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFRGVSQG  174 (471)
T ss_dssp             CCTTTTSEEEEEECSSS-CCCHHHHHHHHTSCTTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHHHHHHH
T ss_pred             EEECCCCeEEEEEccCC-chhHHHHHHHhhhccCCCeEEEeccCcCCCCCcccCcHHHHHHHHHHHHHhh
Confidence            68999999999999999 6999999998888888999999999999999999999999999999998763

>3hjr_A Extracellular serine protease; kexin, hydrolase; 1.65A {Aeromonas sobria}

Probab=98.38  E-value=9.3e-08  Score=74.33  Aligned_cols=49  Identities=12%  Similarity=0.127  Sum_probs=39.2

Q ss_pred             cccccCCCcceeeeeCCC---CCChHHHhhhhcCCCCcceeEeCCCCCCCCC
Q psy13852          8 HELLQISHDGRIRMLDQP---YMTDLIEANSMGHEPNLIDIYSASWGPTDDG   56 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~---~vtd~~EA~Als~~~~~idIYS~SWGP~DdG   56 (78)
                      +||||+|+|.++|+|+..   ..+|+.+|.......+.+|||+||||+....
T Consensus       133 ~GVAp~A~l~~~rvl~~~~~~~~~~~~~a~~~~~~~~~~~I~n~S~G~~~~~  184 (600)
T 3hjr_A          133 KGIAPRAQLQGFNLLDDNSQQLQKDWLYALGDSNASRDNRVFNQSYGMSVVD  184 (600)
T ss_dssp             CCSSTTCEEEEECTTSTTCCCCHHHHHHHTTSSHHHHTCSEEEECCCCCCSS
T ss_pred             EEeCCCCEEEEEEeecCCCCccHHHHHHHhhhhhhhcCCCEEecccCccccC
Confidence            689999999999999762   2456666666666678999999999987654

>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}

Probab=97.42  E-value=4.8e-05  Score=66.55  Aligned_cols=62  Identities=10%  Similarity=0.073  Sum_probs=40.4

Q ss_pred             cccccCCCcceeeeeCCCCCC----hHHHhhhhcC------CCCcceeEeCCCCCCCCCccccCchHHHHHHH
Q psy13852          8 HELLQISHDGRIRMLDQPYMT----DLIEANSMGH------EPNLIDIYSASWGPTDDGKTVDGPRNATMRAI   70 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~vt----d~~EA~Als~------~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al   70 (78)
                      .||||+|+|..+|+++.. ..    ....+.++.+      ..+.+||+|+|||+.++....+.+..+..+|+
T Consensus       290 ~GVAP~AkI~~vKVld~~-~g~~~t~s~l~~AI~~Aid~a~~~~gadVINmS~G~~~~~~~~~~l~~aI~~A~  361 (1354)
T 3lxu_X          290 DGVAPNAKIVSMTIGDGR-LGSMETGTALVRAMTKVMELCRDGRRIDVINMSYGEHANWSNSGRIGELMNEVV  361 (1354)
T ss_dssp             CCSCTTCEEEEEECBCTT-TSSCBCHHHHHHHHHHHHHHHHTTCCCCEEEECCCCCCSCSSCCHHHHHHHHHH
T ss_pred             eeecCCCEEEEEEeccCC-CCcccChHHHHHHHHHHHHHHhhcCCceEEEcCCccCCCCCccHHHHHHHHHHH
Confidence            689999999999999872 22    1222333322      33589999999999876554444444444443

>2iy9_A SUBA; toxin, shiga, plasmid; 1.8A {Escherichia coli}

Probab=97.19  E-value=0.00023  Score=51.89  Aligned_cols=64  Identities=13%  Similarity=-0.032  Sum_probs=44.1

Q ss_pred             cccccCCCcceeeeeCCCCCChHHHhhhhcCCC-------CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQPYMTDLIEANSMGHEP-------NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~~-------~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+|+|..+|+++.....++.+  ++.|..       +.++|.++|||....    ..+.....+|+....++|
T Consensus       104 ~GvAp~a~l~~~~v~~~~~~~~~~~--ai~~a~~~~~~~~~~~~Vin~S~G~~~~----~~~~~~~~~ai~~a~~~g  174 (347)
T 2iy9_A          104 YGVYPHALISSRRVIPDGVQDSWIR--AIESIMSNVFLAPGEEKIINISGGQKGV----ASASVWTELLSRMGRNND  174 (347)
T ss_dssp             CCSSTTCEEEEEECCSSBCTTHHHH--HHHHHHTCTTSCTTEEEEEEESSCBCCC-----CCHHHHHHHHHHHHHTS
T ss_pred             cccCCCCEEEEEEEecCCCHHHHHH--HHHHHHhhhhcccCCceEEEeccccCCC----CCcCHHHHHHHHHHHhCC
Confidence            7899999999999997633334444  444432       269999999995432    234566677787777665

>3t41_A Epidermin leader peptide processing serine protea; structural genomics, center for structural genomics of infec diseases, csgid; 1.95A {Staphylococcus aureus} PDB: 3qfh_A

Probab=97.17  E-value=0.00031  Score=53.00  Aligned_cols=71  Identities=11%  Similarity=-0.026  Sum_probs=43.3

Q ss_pred             ecccccCCCcceeeeeCCCCCChHHHhhhhcCC-CCcceeEeCCCCC-CCCCccccC--------chHHHHHHHHHHHhc
Q psy13852          7 QHELLQISHDGRIRMLDQPYMTDLIEANSMGHE-PNLIDIYSASWGP-TDDGKTVDG--------PRNATMRAIVRGVNE   76 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~-~~~idIYS~SWGP-~DdG~t~~g--------P~~l~~~Al~~Gv~~   76 (78)
                      ..||||+|+|..+|+++....++..-..++.|. .+.+||+++|||. ..++.+.++        ......+|+.+..++
T Consensus       215 ~~GvAp~a~l~~~kv~~~~~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~a~~~  294 (471)
T 3t41_A          215 LIGVAPNNKFTMYRVFGSKKTELLWVSKAIVQAANDGNQVINISVGSYIILDKNDHQTFRKDEKVEYDALQKAINYAKKK  294 (471)
T ss_dssp             SBCSSTTSCEEEEECCSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEEEECTTCCCSEESSCHHHHHHHHHHHHHHHHT
T ss_pred             eeEECCCCeEEEEEeccCCCCcHHHHHHHHHHHHhCCCCEEEeCCCCCCCCccccccccccccchhHHHHHHHHHHHHhC
Confidence            358999999999999985322232223344333 2579999999995 222222222        223445677776666


Q ss_pred             C
Q psy13852         77 H   77 (78)
Q Consensus        77 G   77 (78)
                      |
T Consensus       295 G  295 (471)
T 3t41_A          295 K  295 (471)
T ss_dssp             T
T ss_pred             C
Confidence            5

>1gci_A Subtilisin; hydrolase, serine protease; 0.78A {Bacillus lentus} SCOP: c.41.1.1 PDB: 1jea_A 1ndq_A 1svn_A 1tk2_A* 3bx1_A 1ah2_A 1iav_A* 1c9m_A* 1wsd_A 1mpt_A 1ndu_A 1c9j_A 1q5p_A* 1st3_A 1c9n_A*

Probab=97.14  E-value=0.00029  Score=50.30  Aligned_cols=63  Identities=10%  Similarity=0.027  Sum_probs=42.6

Q ss_pred             cccccCCCcceeeeeCCC-CCChHHHhhhhcCC-CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP-YMTDLIEANSMGHE-PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~-~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      +||||+++|-.+|+++.. ..+...-.+++.|. .+.+||.++|||.....       ....+|+.+..++|
T Consensus        80 ~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~Vin~S~G~~~~~-------~~~~~ai~~a~~~g  144 (269)
T 1gci_A           80 LGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPSPS-------ATLEQAVNSATSRG  144 (269)
T ss_dssp             CCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSSCC-------HHHHHHHHHHHHTT
T ss_pred             EEeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHHCCCeEEEeCCCCCCCC-------HHHHHHHHHHHHCC
Confidence            689999999999999752 12222334555554 25799999999986542       33456666666555

>3i6s_A Subtilisin-like protease; PA-domain, FN3-domain, hydrolase; HET: NAG FUC; 2.50A {Solanum lycopersicum} PDB: 3i74_A*

Probab=97.06  E-value=0.00016  Score=58.35  Aligned_cols=67  Identities=13%  Similarity=0.011  Sum_probs=42.4

Q ss_pred             ecccccCCCcceeeeeCCCCCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHH
Q psy13852          7 QHELLQISHDGRIRMLDQPYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRG   73 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~G   73 (78)
                      .+||||+|+|..+|+++..-.++..-..|+.|.. +.+||.|+|||........+........|..+|
T Consensus       129 ~~GvAP~A~l~~~kv~~~~g~~~~~i~~Ai~~A~~~gvdVIn~SlG~~~~~~~~~~i~~a~~~A~~~G  196 (649)
T 3i6s_A          129 ARGVAPRARLAVYKFSFNEGTFTSDLIAAMDQAVADGVDMISISYGYRFIPLYEDAISIASFGAMMKG  196 (649)
T ss_dssp             ECCSSTTCEEEEEECEETTEECHHHHHHHHHHHHHTTCSEEEECCCCCSCCGGGCHHHHHHHHHHHTT
T ss_pred             eeEECCCCEEEEEeccCCCCCCHHHHHHHHHHHHHcCCCEEEeCCccCCcccchhHHHHHHHHHHhCC
Confidence            3799999999999999742123333345555542 689999999998754433333333334454444

>2b6n_A Proteinase K; S binding, substrate specificity, proteinase K, subtilase, psychrotrophic, psychrophilic, hydrolase; 1.80A {Serratia SP}

Probab=96.97  E-value=0.00035  Score=49.87  Aligned_cols=62  Identities=13%  Similarity=-0.006  Sum_probs=42.3

Q ss_pred             cccccCCCcceeeeeCCC-CCChHHHhhhhcCCC---CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP-YMTDLIEANSMGHEP---NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~---~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+++|..+|+++.. ..+...-.+++.|..   +.++|.++|||...        .....+|+++..++|
T Consensus        85 ~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~g~~Vin~S~G~~~--------~~~~~~ai~~a~~~g  150 (278)
T 2b6n_A           85 YGVAKNVNVVGVRVLNCSGSGSNSGVIAGINWVKNNASGPAVANMSLGGGA--------SQATDDAVNAAVAAG  150 (278)
T ss_dssp             TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC--------CHHHHHHHHHHHHTT
T ss_pred             cCCCCCCeEEEEEEECCCCCccHHHHHHHHHHHHhCCCCCeEEEECCCCCc--------CHHHHHHHHHHHHCC
Confidence            589999999999999752 123333334555432   47899999999743        234556777776665

>1r6v_A Subtilisin-like serine protease; sandwich domain, propeptide, hydrolase; 1.70A {Fervidobacterium pennivorans} SCOP: c.41.1.1

Probab=96.94  E-value=0.00028  Score=57.50  Aligned_cols=63  Identities=14%  Similarity=0.087  Sum_probs=45.6

Q ss_pred             cccccCCCcceeeeeCC-------CCCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQ-------PYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g-------~~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      +||||+|+|..+|+++.       ...++..-+.++.|.. +.+||.++|||....       .....+|+.+..++|
T Consensus       218 ~GVAP~A~I~~vkv~~~~~~~~g~g~~s~~~i~~ai~~A~~~gadVIN~SlG~~~~-------s~~l~~Ai~~A~~~G  288 (671)
T 1r6v_A          218 VGVAPGAKIMPIVIFDDPALVGGNGYVGDDYVAAGIIWATDHGAKVMNHSWGGWGY-------SYTMKEAFDYAMEHG  288 (671)
T ss_dssp             CCSCTTSEEEEEESBCCHHHHCTTSBCCHHHHHHHHHHHHHTTCSEEEECEEBSCC-------CHHHHHHHHHHHHTT
T ss_pred             EEECCCCEEEEEEeccCccccCCCCccCHHHHHHHHHHHHHcCCCEEEeCCCCCCC-------CHHHHHHHHHHHhCC
Confidence            68999999999999975       1344544566666653 579999999998543       234567777777665

>3zxy_A Subtilisin-like protein; hydrolase; 1.58A {Prochloron didemni} PDB: 3zxx_A

Probab=96.88  E-value=0.00052  Score=48.66  Aligned_cols=67  Identities=12%  Similarity=-0.002  Sum_probs=46.2

Q ss_pred             cccccCCCcceeeeeCCC--CCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP--YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~--~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+|+|-.+|+++..  ..++..-++++.|.. +.+||.++|||...+.   ..+.....+|+....++|
T Consensus        68 ~GvAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~~~~Vin~S~G~~~~~---~~~~~~~~~ai~~a~~~g  137 (282)
T 3zxy_A           68 PGIAPQCRGLIVPIFSDDRRRITQLDLARGIERAVNAGAHIINISGGELTDF---GEADGWLENAVSLCRQNN  137 (282)
T ss_dssp             CCSSTTSEEEEEECSCSSSSCCCHHHHHHHHHHHHHTTCSEEEECCCEEESS---SCCCHHHHHHHHHHHHTT
T ss_pred             eeeccccceEeeEeeccccccchHHHHHHHHHHhhccCCeEEeccCcccccc---ccccHHHHHHHHHHhhcC
Confidence            689999999999998531  345555566777653 5799999999964322   233455667777766654

>3lpc_A APRB2; protease, subtilase, virulence factor, hydrolase; 1.70A {Dichelobacter nodosus} PDB: 3lpa_A 3lpd_A 3ti9_A 3ti7_A

Probab=96.83  E-value=0.00047  Score=49.86  Aligned_cols=62  Identities=15%  Similarity=0.103  Sum_probs=40.0

Q ss_pred             cccccCCCcceeeeeCCC--CCChHHHhhhhcCC-----------CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHH
Q psy13852          8 HELLQISHDGRIRMLDQP--YMTDLIEANSMGHE-----------PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGV   74 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~--~vtd~~EA~Als~~-----------~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv   74 (78)
                      +||||+|+|-.+|+++..  ..+++.++  +.|.           .+.++|.+.|||....      +......++++..
T Consensus       123 ~GvAp~a~l~~~~v~~~~~~~~~~~~~a--i~~a~~~~~~~~~~~~~~~~Vin~S~G~~~~------~~~~~~~~~~~a~  194 (340)
T 3lpc_A          123 AGVAYGAKVVPVRALGRCGGYDSDISDG--LYWAAGGRIAGIPENRNPAKVINMSLGSDGQ------CSYNAQTMIDRAT  194 (340)
T ss_dssp             CCTTTTSEEEEEECCBTTBCCHHHHHHH--HHHHHTCCCTTSCCCSSCCSEEEECCCEESC------CCHHHHHHHHHHH
T ss_pred             eeecCCCEEEEEEEecCCCCcHHHHHHH--HHHHhcccccccccccCCCeEEEeCcCCCCC------cchhHHHHHHHHH
Confidence            689999999999999853  12334433  3322           3678999999996321      2333455666555


Q ss_pred             hcC
Q psy13852         75 NEH   77 (78)
Q Consensus        75 ~~G   77 (78)
                      ++|
T Consensus       195 ~~g  197 (340)
T 3lpc_A          195 RLG  197 (340)
T ss_dssp             HHT
T ss_pred             hCC
Confidence            544

>1sh7_A Extracellular subtilisin-like serine proteinase; cold adaptation, psychrotrophic, subtilisin-like proteinase, depentent, hydrolase; HET: PMS; 1.84A {Vibrio SP} PDB: 1s2n_A*

Probab=96.83  E-value=0.00074  Score=48.60  Aligned_cols=62  Identities=11%  Similarity=-0.025  Sum_probs=42.4

Q ss_pred             cccccCCCcceeeeeCCC-CCChHHHhhhhcCCC---CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP-YMTDLIEANSMGHEP---NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~---~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+++|-.+|+++.. ..+...-..++.|..   +.++|.+.|||...        .....+|+.+..++|
T Consensus        83 ~GvAp~a~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~~~~~Vin~S~G~~~--------~~~~~~ai~~a~~~g  148 (284)
T 1sh7_A           83 YGVAKNVNIVGVRVLSCSGSGTTSGVISGVDWVAQNASGPSVANMSLGGGQ--------STALDSAVQGAIQSG  148 (284)
T ss_dssp             TCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHHCCSSEEEEECCCBSC--------CHHHHHHHHHHHHTT
T ss_pred             CCcCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhCCCCCcEEEeCCCCCC--------CHHHHHHHHHHHHCC
Confidence            589999999999999752 123333345555543   35899999999863        234556777766655

>1dbi_A AK.1 serine protease; hydrolase; 1.80A {Bacillus SP} SCOP: c.41.1.1

Probab=96.81  E-value=0.00083  Score=48.05  Aligned_cols=63  Identities=14%  Similarity=-0.015  Sum_probs=42.5

Q ss_pred             cccccCCCcceeeeeCCC-CCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      +||||+++|..+|+++.. ..+...-.+++.|.. +.+||.++|||....       .....+|+.+..++|
T Consensus        91 ~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~g~~Vin~S~G~~~~-------~~~~~~ai~~a~~~g  155 (280)
T 1dbi_A           91 AGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCH-------TTTLENAVNYAWNKG  155 (280)
T ss_dssp             CCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCCC-------CHHHHHHHHHHHHTT
T ss_pred             eEeCCCCEEEEEEEECCCCCcCHHHHHHHHHHHHHCCCCEEEeCCCCCCC-------CHHHHHHHHHHHHCC
Confidence            689999999999999752 122233345555542 579999999997532       234456777766655

>2pwa_A Proteinase K; structure, alanine boronic acid, hydrolase; 0.83A {Engyodontium album} SCOP: c.41.1.1 PDB: 1p7v_A 1p7w_A 2dqk_A 2duj_A 2g4v_A 2hd4_A 2hpz_A 2id8_A 2pq2_A 1ic6_A 2pwb_A* 2pyz_A* 2v8b_A 3aj8_A 3aj9_A 3dyb_A* 3gt3_A* 3gt4_A* 3l1k_A 3osz_A ...

Probab=96.62  E-value=0.0011  Score=47.69  Aligned_cols=62  Identities=13%  Similarity=-0.063  Sum_probs=40.5

Q ss_pred             cccccCCCcceeeeeCCC-CCChHHHhhhhcCCC--------CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP-YMTDLIEANSMGHEP--------NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~--------~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      +||||+++|-.+|+++.. ..+...-..++.|..        ..+||.++|||...        .....+|+.+..++|
T Consensus        82 ~GvAp~a~i~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~~~Vin~S~G~~~--------~~~~~~ai~~a~~~g  152 (279)
T 2pwa_A           82 YGVAKKTQLFGVKVLDDNGSGQYSTIIAGMDFVASDKNNRNCPKGVVASLSLGGGY--------SSSVNSAAARLQSSG  152 (279)
T ss_dssp             TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEEC--------CHHHHHHHHHHHHTT
T ss_pred             cccCCCCEEEEEEeEcCCCCcCHHHHHHHHHHHHhcCccccCCCccEEEecCCCCC--------CHHHHHHHHHHHHCC
Confidence            589999999999999752 123333334444432        23499999999642        244556777766655

>2ixt_A 36KDA protease; serine protease, sphericase, subtilisin like protease, hydrolase; 0.8A {Bacillus sphaericus} SCOP: c.41.1.1 PDB: 3d43_A 1ea7_A* 2gko_A*

Probab=96.62  E-value=0.0012  Score=47.19  Aligned_cols=63  Identities=13%  Similarity=0.003  Sum_probs=42.0

Q ss_pred             cccccCCCcceeeeeCCC-CCChHHHhhhhcCCCC-c-----ceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP-YMTDLIEANSMGHEPN-L-----IDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~~-~-----idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      +||||+|+|-.+|+++.. ..+...-..+|.|..+ .     .+|.++|||...+       .....+|+.+..++|
T Consensus        91 ~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~~~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~g  160 (310)
T 2ixt_A           91 YGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSAN-------NSLISSAVNYAYSKG  160 (310)
T ss_dssp             BCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECCCBSSC-------CHHHHHHHHHHHHTT
T ss_pred             EEECCCCEEEEEEEEcCCCCCcHHHHHHHHHHHHHhhhccCCCeEEEEcCCCCCC-------CHHHHHHHHHHHhCC
Confidence            689999999999999742 1233333455555432 2     3999999998653       234556777666655

>1r0r_E Subtilisin carlsberg; high resolution, serine protease, protein inhibitor, hydrolase; 1.10A {Bacillus licheniformis} SCOP: c.41.1.1 PDB: 1af4_A* 1be8_A* 1bfk_A 1bfu_A 1be6_A 1oyv_A 1cse_E 1sbc_A 1sca_A 1scb_A 1scd_A 2sec_E 2wuv_A 2wuw_E 1yu6_A 1scn_E* 1c3l_A 1avt_A* 1av7_A* 1sel_A ...

Probab=96.55  E-value=0.00079  Score=47.94  Aligned_cols=61  Identities=11%  Similarity=0.156  Sum_probs=41.6

Q ss_pred             cccccCCCcceeeeeCCC---CCChHHHhhhhcCC-CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP---YMTDLIEANSMGHE-PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~---~vtd~~EA~Als~~-~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      +||||+|+|-.+|+++..   ...++.  +++.|. .+.+||.++|||....       .....+|+++..++|
T Consensus        81 ~GvAp~a~l~~~~v~~~~g~~~~~~i~--~ai~~a~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~g  145 (274)
T 1r0r_E           81 LGVAPSVSLYAVKVLNSSGSGSYSGIV--SGIEWATTNGMDVINMSLGGASG-------STAMKQAVDNAYARG  145 (274)
T ss_dssp             CCSSTTSEEEEEECSCTTSEECHHHHH--HHHHHHHHTTCSEEEECEEBSSC-------CHHHHHHHHHHHHTT
T ss_pred             EEECCCCEEEEEEEECCCCCccHHHHH--HHHHHHHHcCCCEEEeCCCCCCC-------cHHHHHHHHHHHHCC
Confidence            689999999999999752   122333  444443 2579999999997543       234456777766655

>1to2_E Subtilisin BPN'; serine protease, hydrolase; HET: CIT 15P; 1.30A {Bacillus amyloliquefaciens} SCOP: c.41.1.1 PDB: 1tm1_E* 1tm3_E* 1tm4_E* 1lw6_E* 1tm7_E* 1tmg_E* 1to1_E* 1tm5_E* 1y1k_E* 1y33_E* 1y34_E* 1y3b_E* 1y3c_E* 1y3d_E* 1y3f_E* 1y48_E* 1y4a_E* 1y4d_E 1sup_A* 1sib_E ...

Probab=96.53  E-value=0.0011  Score=47.43  Aligned_cols=61  Identities=16%  Similarity=0.163  Sum_probs=41.1

Q ss_pred             cccccCCCcceeeeeCCC---CCChHHHhhhhcCC-CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP---YMTDLIEANSMGHE-PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~---~vtd~~EA~Als~~-~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      +||||+|+|-.+|+++..   ..+++.  +++.|. .+.+||.++|||....       .....+|+.+..++|
T Consensus        82 ~GvAp~a~l~~~kv~~~~g~~~~~~i~--~ai~~a~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~g  146 (281)
T 1to2_E           82 LGVAPSASLYAVKVLGADGSGQYSWII--NGIEWAIANNMDVINMSLGGPSG-------SAALKAAVDKAVASG  146 (281)
T ss_dssp             CCSSTTSEEEEEECSCTTSEECHHHHH--HHHHHHHHTTCSEEEECEEBSCC-------CHHHHHHHHHHHHTT
T ss_pred             eeeCCCCEEEEEEEeCCCCCccHHHHH--HHHHHHHHCCCcEEEECCcCCCC-------CHHHHHHHHHHHHCC
Confidence            689999999999999762   122333  334333 2579999999997543       234456777666655

>2x8j_A Intracellular subtilisin protease; hydrolase, serine protease, intracellular proteinase regulat; HET: CSX 1PE; 1.56A {Bacillus clausii} PDB: 2wv7_A 2wwt_A 2xrm_A*

Probab=96.50  E-value=0.00097  Score=48.77  Aligned_cols=64  Identities=16%  Similarity=0.079  Sum_probs=41.3

Q ss_pred             ecccccCCCcceeeeeCCC---CCChHHHhhh--hcC---CCCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          7 QHELLQISHDGRIRMLDQP---YMTDLIEANS--MGH---EPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g~---~vtd~~EA~A--ls~---~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      ..||||+|+|-.+|+++..   ...++.+|-.  +.+   ..+.++|.++|||...+       .....+|+.+..++|
T Consensus       103 ~~GvAp~a~l~~~kv~~~~g~~~~~~i~~ai~~a~~~~~~~~~~~~Vin~S~G~~~~-------~~~~~~ai~~a~~~g  174 (327)
T 2x8j_A          103 VVGVAPKADLFIIKALSGDGSGEMGWIAKAIRYAVDWRGPKGEQMRIITMSLGGPTD-------SEELHDAVKYAVSNN  174 (327)
T ss_dssp             CCCSSTTCEEEEEECSCTTSEECHHHHHHHHHHHHHCCCTTSCCCSEEEECEEBSCC-------CHHHHHHHHHHHHTT
T ss_pred             cEeeCCCCEEEEEEeECCCCCcCHHHHHHHHHHHHhhcccccCCceEEEECCCcCCC-------CHHHHHHHHHHHHCC
Confidence            3689999999999999752   1223443322  221   12679999999997543       233456777666655

>1thm_A Thermitase; hydrolase(serine protease); 1.37A {Thermoactinomyces vulgaris} SCOP: c.41.1.1 PDB: 2tec_E 1tec_E 3tec_E

Probab=96.48  E-value=0.0019  Score=46.01  Aligned_cols=63  Identities=19%  Similarity=0.047  Sum_probs=41.6

Q ss_pred             cccccCCCcceeeeeCCC-CCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+++|..+|+++.. ..+...-++++.|.. +.++|.++|||....       .....+|+++..++|
T Consensus        90 ~GvAp~a~l~~~~v~~~~g~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~-------~~~l~~ai~~a~~~g  154 (279)
T 1thm_A           90 AGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVG-------NSGLQQAVNYAWNKG  154 (279)
T ss_dssp             CCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSSC-------CHHHHHHHHHHHHTT
T ss_pred             EEeCCCCEEEEEEeeCCCCCccHHHHHHHHHHHHHCCCCEEEEecCCCCC-------CHHHHHHHHHHHHCC
Confidence            589999999999999752 122222234455442 579999999998643       233456666666555

>3f7m_A Alkaline serine protease VER112; verticillium psalliotae, cuticle- degrading protease, nematodes, hydrolase, secreted, zymogen; 1.60A {Lecanicillium psalliotae} SCOP: c.41.1.1 PDB: 3f7o_A

Probab=96.41  E-value=0.0017  Score=45.99  Aligned_cols=62  Identities=15%  Similarity=-0.049  Sum_probs=40.1

Q ss_pred             cccccCCCcceeeeeCCC-CCChHHHhhhhcCCC--------CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP-YMTDLIEANSMGHEP--------NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~--------~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .|||++++|-.+|+++.. ..+...-..++.|..        ..++|.+.|||..        ......+|+++..++|
T Consensus        83 ~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~~~~~~Vin~S~g~~--------~~~~~~~a~~~a~~~g  153 (279)
T 3f7m_A           83 WGVAKKVSIFGVKVLDDSGSGSLSNIIAGMDFVASDRQSRNCPRRTVASMSLGGG--------YSAALNQAAARLQSSG  153 (279)
T ss_dssp             TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHGGGSCCTTEEEEEECCCEE--------CCHHHHHHHHHHHHTT
T ss_pred             cccCCCCEEEEEEeeCCCCCcCHHHHHHHHHHHHhccccccCCCCeEEEeCCCcC--------ccHHHHHHHHHHHHCC
Confidence            589999999999999752 122222233343322        2489999999953        2345566777766655

>4dzt_A Aqualysin-1, aqualysin-I; serine protease, calcium binding, inhibitor, hydrolase-hydro inhibitor complex; HET: PMS; 1.95A {Thermus aquaticus}

Probab=96.33  E-value=0.0022  Score=45.35  Aligned_cols=62  Identities=11%  Similarity=-0.029  Sum_probs=41.3

Q ss_pred             cccccCCCcceeeeeCCC-CCChHHHhhhhcCCC---CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP-YMTDLIEANSMGHEP---NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~---~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .|||++++|-.+|+++.. ..+...-..++.|..   ..++|.++|||-..        .....+|+++..++|
T Consensus        83 ~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~~vin~S~g~~~--------~~~~~~a~~~a~~~g  148 (276)
T 4dzt_A           83 YGVAKAVNLYAVRVLDCNGSGSTSGVIAGVDWVTRNHRRPAVANMSLGGGV--------STALDNAVKNSIAAG  148 (276)
T ss_dssp             TCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHHCCSSEEEEECCCEEC--------CHHHHHHHHHHHHTT
T ss_pred             cCCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHhcCCCCeEEEECCCCCC--------CHHHHHHHHHHHhCC
Confidence            689999999999999852 123333334444432   47999999999532        244556777766665

>2z2z_A TK-subtilisin precursor; thermococcus kodakaraensis, hydrolase; 1.87A {Thermococcus kodakarensis} PDB: 2e1p_A 2zwp_A 2zwo_A

Probab=96.28  E-value=0.00085  Score=50.05  Aligned_cols=61  Identities=16%  Similarity=0.180  Sum_probs=40.1

Q ss_pred             cccccCCCcceeeeeCCC---CCChHHHhhhhcCC---------------------CCcceeEeCCCCCCCCCccccCch
Q psy13852          8 HELLQISHDGRIRMLDQP---YMTDLIEANSMGHE---------------------PNLIDIYSASWGPTDDGKTVDGPR   63 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~---~vtd~~EA~Als~~---------------------~~~idIYS~SWGP~DdG~t~~gP~   63 (78)
                      .||||+|+|..+|+++..   ..+++.++  +.|.                     .+.+||.++|||....       .
T Consensus       168 ~GvAp~a~l~~~kv~~~~g~~~~~~i~~a--i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~-------~  238 (395)
T 2z2z_A          168 VGVAPGVQIYSVRVLDARGSGSYSDIAIG--IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD-------D  238 (395)
T ss_dssp             CCSSTTCEEEEEECSCTTSEEEHHHHHHH--HHHHHHTTTTCSSTTCSSCCTTCTTSCCCSEEEECEEBSCC-------C
T ss_pred             EEECCCCEEEEEEEecCCCCccHHHHHHH--HHHHHhCccccccccccccccccccCCCCeEEEecCCCCCC-------C
Confidence            689999999999999752   12334333  3221                     2379999999997542       2


Q ss_pred             HHHHHHHHHHHhcC
Q psy13852         64 NATMRAIVRGVNEH   77 (78)
Q Consensus        64 ~l~~~Al~~Gv~~G   77 (78)
                      ....+|+.+..++|
T Consensus       239 ~~~~~ai~~a~~~g  252 (395)
T 2z2z_A          239 SYLYDMIIQAYNAG  252 (395)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCC
Confidence            34456776666655

>3afg_A Subtilisin-like serine protease; propeptide, thermococcus kodakaraensis, hydrolas protease; 2.00A {Thermococcus kodakarensis}

Probab=96.26  E-value=0.0012  Score=51.73  Aligned_cols=64  Identities=14%  Similarity=0.189  Sum_probs=40.7

Q ss_pred             cccccCCCcceeeeeCCC---CCChHHHhhhhcCCC-----CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP---YMTDLIEANSMGHEP-----NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~---~vtd~~EA~Als~~~-----~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+|+|..+|+|+..   ..+++.  .++.|..     +.+||.++|||......    ......+|+.+.+++|
T Consensus       200 ~GvAp~A~l~~~kv~~~~g~~~~~~i~--~ai~~a~~~~~~~g~~Vin~SlG~~~~~~----~~~~l~~ai~~a~~~G  271 (539)
T 3afg_A          200 KGMAPGAKLVGIKVLNGQGSGSISDII--NGVDWAVQNKDKYGIKVINLSLGSSQSSD----GTDSLSQAVNNAWDAG  271 (539)
T ss_dssp             CCSCTTCEEEEEECSCTTSEEEHHHHH--HHHHHHHHTHHHHTEEEEEECCCCCSCCC----SCSHHHHHHHHHHHTT
T ss_pred             EEECCCCEEEEEEeecCCCCcCHHHHH--HHHHHHHhhhhhcCCcEEEeCCCCCCCCc----cchHHHHHHHHHHhcC
Confidence            699999999999999862   123444  3444332     36899999999865421    1222345555555554

>2z30_A TK-subtilisin; thermococcus kodakaraensis, hydrolase; 1.65A {Thermococcus kodakarensis} PDB: 3a3o_A 3a3n_A 2zrq_A 2z57_A 2z56_A 2z58_A 3a3p_A 2z2x_A* 2z2y_A

Probab=96.22  E-value=0.0014  Score=47.53  Aligned_cols=61  Identities=16%  Similarity=0.180  Sum_probs=40.6

Q ss_pred             cccccCCCcceeeeeCCC---CCChHHHhhhhcCC---------------------CCcceeEeCCCCCCCCCccccCch
Q psy13852          8 HELLQISHDGRIRMLDQP---YMTDLIEANSMGHE---------------------PNLIDIYSASWGPTDDGKTVDGPR   63 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~---~vtd~~EA~Als~~---------------------~~~idIYS~SWGP~DdG~t~~gP~   63 (78)
                      .||||+|+|-.+|+++..   ..+++.++  +.|.                     .+.+||.++|||...+       .
T Consensus        93 ~GvAp~a~l~~~~v~~~~g~~~~~~i~~a--i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~Vin~S~G~~~~-------~  163 (320)
T 2z30_A           93 VGVAPGVQIYSVRVLDARGSGSYSDIAIG--IEQAILGPDGVADKDGDGIIAGDPDDDAAEVISMSLGGPAD-------D  163 (320)
T ss_dssp             CCSSTTCEEEEEECSCTTSEEEHHHHHHH--HHHHHHTTTTCSCTTSSSCCTTCTTSCCCSEEEECEEBSCC-------C
T ss_pred             EeeCCCCEEEEEEeeCCCCCccHHHHHHH--HHHHHhCcccccccccccccccccccCCceEEEecCCCCCC-------C
Confidence            689999999999999752   12233333  2221                     2489999999997543       2


Q ss_pred             HHHHHHHHHHHhcC
Q psy13852         64 NATMRAIVRGVNEH   77 (78)
Q Consensus        64 ~l~~~Al~~Gv~~G   77 (78)
                      ....+|+.+..++|
T Consensus       164 ~~~~~ai~~a~~~g  177 (320)
T 2z30_A          164 SYLYDMIIQAYNAG  177 (320)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHCC
Confidence            34456777766655

>1y9z_A Alkaline serine protease; subtilisin-like alpha/beta domain, insert beta barrel domain hydrolase; HET: PMS; 1.40A {Pseudoalteromonas SP} PDB: 1v6c_A* 1wvm_A*

Probab=96.18  E-value=0.005  Score=46.50  Aligned_cols=63  Identities=11%  Similarity=0.162  Sum_probs=42.5

Q ss_pred             cccccCC--CcceeeeeCCC---CCChHHHhhhhcCCCCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQIS--HDGRIRMLDQP---YMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a--~i~GIRmL~g~---~vtd~~EA~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+|  +|..+|+++..   ...++.+|-..-.+...+||.++|||....       .....+|+.+..++|
T Consensus        83 ~GvAP~a~~~l~~~kv~~~~g~~~~~~~~~ai~~a~~~~g~~Vin~S~G~~~~-------~~~~~~ai~~a~~~g  150 (441)
T 1y9z_A           83 VGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSGS-------TTTERNALNTHYNNG  150 (441)
T ss_dssp             CCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCBSCC-------BHHHHHHHHHHHHTT
T ss_pred             eEecCCCCCEEEEEEEeCCCCCcCHHHHHHHHHHHHHhcCCcEEEeCCCCCCC-------CHHHHHHHHHHHHCC
Confidence            6899996  78999999631   355666553333332379999999996543       223456777777766

>4h6x_A Thiazoline oxidase/subtilisin-like protease; hydrolase; 2.00A {Prochloron didemni} PDB: 4aks_A 4akt_A

Probab=95.82  E-value=0.0024  Score=47.06  Aligned_cols=67  Identities=9%  Similarity=-0.019  Sum_probs=35.6

Q ss_pred             cccccCCCcceeeeeCCC------CCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP------YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~------~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+|+|-.+|++...      ..+...-+.++.|.. +.++|.++|||-.....   .......+|+.+..++|
T Consensus       126 ~GvAp~a~l~~~k~~~~~~~~~~~~~~~~~~~~ai~~a~~~g~~Vin~S~G~~~~~~---~~~~~~~~ai~~a~~~g  199 (357)
T 4h6x_A          126 FGIAPNCRVINMPQDAVIRGNYDDVMSPLNLARAIDLALELGANIIHCAFCRPTQTS---EGEEILVQAIKKCQDNN  199 (357)
T ss_dssp             CCSCTTSEEEEEECTTC----------CHHHHHHHHHHHHTTCSEEEEC--------------CHHHHHHHHHHHTT
T ss_pred             eEeeccceEEeeeecccCCCCccccccHHHHHHHHHHHHHcCCCEEeeccccCCccc---cchhHHHHHHHHHhhCC
Confidence            689999999999987431      122223345555543 57899999999532211   11223455666665554

>4h6w_A N-terminal cyanobactin protease; hydrolase; 2.45A {Planktothrix agardhii nies-596}

Probab=95.64  E-value=0.0058  Score=43.36  Aligned_cols=67  Identities=12%  Similarity=0.073  Sum_probs=45.0

Q ss_pred             cccccCCCcceeeeeCCC--CCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP--YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~--~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+|+|-.+|++...  ..+...-+.++.|.. +..+|+++|||-..+.   ..+.....+|+.+..++|
T Consensus        81 ~GVAp~a~l~~~kv~~~~~~~~~~~~i~~ai~~a~~~g~~vi~~s~g~~~~~---~~~~~~~~~ai~~a~~~g  150 (306)
T 4h6w_A           81 TGIAPQCRGLIVPVFADESLKLSQLDLSRAIEQAVNNGANIINVSAGQLTDA---GEADTWLEKAIQLCQENN  150 (306)
T ss_dssp             CCSSTTSEEEECCCCCSSSCCCCHHHHHHHHHHHHHTTCSEEEECCCEEESS---SCCCHHHHHHHHHHHHTT
T ss_pred             ceeccccccceeeccccccccchHHHHHHHHHHhhcccceeeeccccccccC---CCccHHHHHHHHHHHHcC
Confidence            689999999999998532  244444456666653 5789999999853221   123455667777766655

>1xf1_A C5A peptidase, SCP; hydrolase; HET: CIT; 1.90A {Streptococcus pyogenes} PDB: 3eif_A*

Probab=95.16  E-value=0.013  Score=48.70  Aligned_cols=68  Identities=10%  Similarity=-0.035  Sum_probs=42.0

Q ss_pred             cccccCCCcceeeeeCCCCC--ChHHHhhhhcCC-CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQPYM--TDLIEANSMGHE-PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~v--td~~EA~Als~~-~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+|+|..+|+++....  .+..-..|+.+. .+.+||.|+|||..... .-+.+. ...+|+....++|
T Consensus       111 ~GvAP~A~l~~~kv~~~~g~~~~~~~i~~Ai~~Ai~~gvdVIn~SlG~~~~~-~~~~~~-~~~~ai~~A~~~G  181 (926)
T 1xf1_A          111 EGAMPEAQLLLMRVEIVNGLADYARNYAQAIRDAINLGAKVINMSFGNAALA-YANLPD-ETKKAFDYAKSKG  181 (926)
T ss_dssp             TTTCTTSEEEEEECCCCSCHHHHHHHHHHHHHHHHHTTCEEEEECCSSCCCT-TCCCCH-HHHHHHHHHHHTT
T ss_pred             EEECCCCEEEEEEeecCCCCCCcHHHHHHHHHHHHHhCCcEEEECCCCCCCC-cccccc-HHHHHHHHHHhCC
Confidence            68999999999999986210  111223445544 25789999999975432 112222 3355666666665

>2qtw_B Proprotein convertase subtilisin/kexin type 9; coronary heart disease, hypercholest low density lipoprotein receptor, autocatalytic cleavage; HET: NAG; 1.90A {Homo sapiens} PDB: 3m0c_B 3bps_A 3gcw_A 3gcx_A 3p5b_A 3p5c_A 2pmw_B 3h42_B 2w2n_A 2w2m_A 2w2p_A 2w2q_A 2xtj_A 2w2o_A

Probab=95.14  E-value=0.0045  Score=49.64  Aligned_cols=60  Identities=8%  Similarity=-0.063  Sum_probs=41.1

Q ss_pred             cccccCCCcceeeeeCCC---CCChHHHhhhhcCC-------CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP---YMTDLIEANSMGHE-------PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~---~vtd~~EA~Als~~-------~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+++|-.+|+|+..   ..+++.+  +|.|.       .+.++|.+.|||...        .....+|+.+.+++|
T Consensus        87 ~GVAP~A~L~~vkVl~~~G~g~~s~ii~--ai~~a~~~~~~~~~g~~VINmSlGg~~--------s~~l~~Ai~~A~~~G  156 (546)
T 2qtw_B           87 AGVAKGASMRSLRVLNCQGKGTVSGTLI--GLEFIRKSQLVQPVGPLVVLLPLAGGY--------SRVLNAACQRLARAG  156 (546)
T ss_dssp             TCSSTTCEEEEEECSCTTSEEEHHHHHH--HHHHHHHHHHHSCCSCEEEEECEEEEC--------CHHHHHHHHHHHHTT
T ss_pred             CCcCCCCEEEEEEEECCCCCcCHHHHHH--HHHHHHHhhhhccCCCeEEEecCCCCC--------cHHHHHHHHHHHhCC
Confidence            689999999999999852   1233443  33332       357899999998632        345566777777665

>1wmd_A Protease; alpha-beta hydrolase fold, jelly-roll beta-barrel, hydrolase; 1.30A {Bacillus SP} SCOP: b.18.1.20 c.41.1.1 PDB: 1wme_A 1wmf_A

Probab=94.69  E-value=0.017  Score=43.35  Aligned_cols=47  Identities=15%  Similarity=0.188  Sum_probs=33.6

Q ss_pred             cccccCCCcceeeeeCCC-C----CChHHHhhhhcCC-CCcceeEeCCCCCCCCC
Q psy13852          8 HELLQISHDGRIRMLDQP-Y----MTDLIEANSMGHE-PNLIDIYSASWGPTDDG   56 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~-~----vtd~~EA~Als~~-~~~idIYS~SWGP~DdG   56 (78)
                      +||||+|+|-.+|+++.. .    ..++.++  +.|. .+.++|.++|||....+
T Consensus        84 ~GvAp~a~l~~~~v~~~~g~~~~~~~~~~~a--i~~a~~~g~~Vin~S~G~~~~~  136 (434)
T 1wmd_A           84 KGMAPQANLVFQSIMDSGGGLGGLPSNLQTL--FSQAYSAGARIHTNSWGAAVNG  136 (434)
T ss_dssp             CCSSTTSEEEEEECCCTTSSCTTSCSSHHHH--HHHHHHTTCSEEEECCCBCCTT
T ss_pred             eeeCCCCEEEEEEeecCCCccccccHHHHHH--HHHHHhcCCeEEEecCCCCcCC
Confidence            689999999999999752 1    2244443  3333 25789999999987643

>2p4e_P Proprotein convertase subtilisin/kexin type 9; protease, LDL receptor, LDL, endocytosis, hydrol; 1.98A {Homo sapiens}

Probab=94.27  E-value=0.0078  Score=49.49  Aligned_cols=43  Identities=5%  Similarity=-0.089  Sum_probs=0.0

Q ss_pred             cccccCCCcceeeeeCCC---CCChHHHhhhhcCCC-------CcceeEeCCCCC
Q psy13852          8 HELLQISHDGRIRMLDQP---YMTDLIEANSMGHEP-------NLIDIYSASWGP   52 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~---~vtd~~EA~Als~~~-------~~idIYS~SWGP   52 (78)
                      .|||++++|..+|+|+..   ..+++.  .++.|..       +.++|.+.|||.
T Consensus       239 ~GVAP~A~L~~vKVl~~~G~g~~s~ii--~aI~~a~~~~~~~~~g~~VINmSlGg  291 (692)
T 2p4e_P          239 AGVAKGASMRSLRVLNCQGKGTVSGTL--IGLEFIRKSQLVQPVGPLVVLLPLAG  291 (692)
T ss_dssp             -------------------------------------------------------
T ss_pred             CccCCCCEEEEEEeecCCCCCCHHHHH--HHHHHHHhhhhcccCCceEEEecCCC
Confidence            689999999999999731   244444  4444443       368999999985

>3vta_A Cucumisin; subtilisin-like fold, serine protease, hydrolase; HET: DFP NAG FUC BMA MAN; 2.75A {Cucumis melo}

Probab=93.21  E-value=0.02  Score=45.44  Aligned_cols=56  Identities=11%  Similarity=-0.015  Sum_probs=37.3

Q ss_pred             ecccccCCCcceeeeeCCCCCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCc
Q psy13852          7 QHELLQISHDGRIRMLDQPYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGP   62 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP   62 (78)
                      .+||||+|+|.-+|++....-++.+-..++.+.. +.+||-|.|||-.........|
T Consensus       120 ~~GvAP~A~l~~~kv~~~~g~~~~di~~a~~~a~~~g~dVin~SlG~~~~~~~~~~~  176 (621)
T 3vta_A          120 ARGGVPLARIAAYKVCWNDGCSDTDILAAYDDAIADGVDIISLSVGGANPRHYFVDA  176 (621)
T ss_dssp             ECCSCTTSEEEEEECEETTEECHHHHHHHHHHHHHHTCSEEEECCCCCCGGGGGGCT
T ss_pred             EEEECCCCEEEEEEeecCCCCCHHHHHHHHHHHHHhCCCEEEecCCCCCCCCcCCcH
Confidence            4799999999999999763233333334555442 5899999999965443333333

>1t1e_A Kumamolisin; proenzyme, prosubtilase, activation mechanism, sedolisin, serine-carboxyl proteinase, hydrolase; 1.18A {Bacillus SP} SCOP: c.41.1.2 d.58.3.2 PDB: 1t1g_A 1t1i_A 1gt9_1 1gtg_1 1gtj_1* 1gtl_1* 1sio_A* 1sn7_A 1zvj_A 1siu_A 1zvk_A

Probab=80.72  E-value=0.31  Score=38.53  Aligned_cols=67  Identities=18%  Similarity=0.169  Sum_probs=40.2

Q ss_pred             eecccccCCCcceeeeeCCCCCChHHHhhh--hcCCCCcceeEeCCCCCCCCCccccCchH--HHHHHHHHHHhcC
Q psy13852          6 MQHELLQISHDGRIRMLDQPYMTDLIEANS--MGHEPNLIDIYSASWGPTDDGKTVDGPRN--ATMRAIVRGVNEH   77 (78)
Q Consensus         6 m~~gvAy~a~i~GIRmL~g~~vtd~~EA~A--ls~~~~~idIYS~SWGP~DdG~t~~gP~~--l~~~Al~~Gv~~G   77 (78)
                      +.+|||++|+|--++..+.  ..++.++-.  +....+..+|-|.|||-..+.   ..+..  ....++.+...+|
T Consensus       273 ~~~gvAp~a~i~~~~~~~~--~~~~~~ai~~av~~~~~~~~VIS~S~G~~e~~---~~~~~~~~~~~~~~~a~~~G  343 (552)
T 1t1e_A          273 VAGALAPGAKIAVYFAPNT--DAGFLNAITTAVHDPTHKPSIVSISWGGPEDS---WAPASIAAMNRAFLDAAALG  343 (552)
T ss_dssp             HHHHHCTTSEEEEEECCSS--HHHHHHHHHHHHTCTTTCCSEEEECEEEEGGG---SCHHHHHHHHHHHHHHHHTT
T ss_pred             hhhccCCCCeEEEEEcCCC--CchHHHHHHHHHhcccCCCCEEEecccCCccc---CCHHHHHHHHHHHHHHHhCC
Confidence            4678999999998886443  245554433  222236789999999964321   11222  2335666665555

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	78
d2id4a2	339	c.41.1.1 (A:122-460) Kexin, N-terminal domain {Bak	0.003

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 339

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Kexin, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 32.1 bits (71), Expect = 0.003
 Identities = 22/53 (41%), Positives = 33/53 (62%)

Query: 24  QPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNE 76
              +T   EA S+ +  ++ DIYS SWGP DDG+ + GP +   +A+V+GV E
Sbjct: 126 SGDITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKGVTE 178

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	78
d1p8ja2	334	Furin, N-terminal domain {Mouse (Mus musculus) [Ta	98.12
d2id4a2	339	Kexin, N-terminal domain {Baker's yeast (Saccharom	97.95
d1r6va_	671	Fervidolysin {Fervidobacterium pennivorans [TaxId:	96.9
d1dbia_	280	Thermostable serine protease {Bacillus sp., AK.1 [	96.88
d1t1ga_	357	Serine-carboxyl proteinase, SCP {Bacillus novosp.	96.57
d1ga6a_	369	Serine-carboxyl proteinase, SCP {Pseudomonas sp.,	96.4
d1thma_	279	Thermitase {Thermoactinomyces vulgaris [TaxId: 202	95.84
d1to2e_	281	Subtilisin {Bacillus amyloliquefaciens, Novo/BPN'	95.37
d1v6ca_	435	Alkaline serine protease Apa1 {Pseudoalteromonas s	94.33
d1wmda2	318	Alkaline serine protease kp-43, N-terminal domain	94.08
d1gcia_	269	Subtilisin {Bacillus lentus [TaxId: 1467]}	92.73
d1r0re_	274	Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1	92.6
d2ixta1	309	Sphericase {Bacillus sphaericus [TaxId: 1421]}	88.74

>d1p8ja2 c.41.1.1 (A:109-442) Furin, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Furin, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=2.3e-06  Score=58.45  Aligned_cols=64  Identities=52%  Similarity=0.792  Sum_probs=56.9

Q ss_pred             cccccCCCcceeeeeCCCCCChHHHhhhhcCCCCcceeEeCCCCCCCCCccccCchHHHHHHHHH
Q psy13852          8 HELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVR   72 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~   72 (78)
                      .|+|+++++-++|.+++ ...+..|+.++.+..+.++++++|||+.+.+..+++|..+....+..
T Consensus       105 ~g~a~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~n~S~g~~~~~~~~~~~~~~~~~~~~~  168 (334)
T d1p8ja2         105 VGVAYNARIGGVRMLDG-EVTDAVEARSLGLNPNHIHIYSASWGPEDDGKTVDGPARLAEEAFFR  168 (334)
T ss_dssp             CCTTTTSEEEEEECSSS-CCCHHHHHHHHTSCTTTCCEEEECCBSCCSSSCCBCCCHHHHHHHHH
T ss_pred             ccccccccccchhhccc-cccchHHHHHHHhhhcCCcEEeCCCCCCCcCcccCCccchhhHHHHH
Confidence            46999999999999999 69999999999999999999999999999999999998876654443

>d2id4a2 c.41.1.1 (A:122-460) Kexin, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Kexin, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.95  E-value=3.4e-06  Score=57.98  Aligned_cols=66  Identities=35%  Similarity=0.529  Sum_probs=58.1

Q ss_pred             ecccccCCCcceeeeeCCCCCChHHHhhhhcCCCCcceeEeCCCCCCCCCccccCchHHHHHHHHHH
Q psy13852          7 QHELLQISHDGRIRMLDQPYMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRG   73 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g~~vtd~~EA~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~G   73 (78)
                      ..||||++++.++|.+++ ...+.....++.+..+.++|+++|||+.+++..++++..+...++..-
T Consensus       110 ~~Gvap~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~s~g~~~~~~~~~~~~~~~~~a~~~~  175 (339)
T d2id4a2         110 GVGVGYNAKISGIRILSG-DITTEDEAASLIYGLDVNDIYSCSWGPADDGRHLQGPSDLVKKALVKG  175 (339)
T ss_dssp             CCCTTTTSEEEEEECTTS-CCCHHHHHHHTTTTTTTCSEEEECEESCCSSSCCBCCCHHHHHHHHHH
T ss_pred             ccccccccccceEEEeec-cccchHHHHHHHHHHhhCCEEeccCCCCCCcccccCccchhHHHHHHH
Confidence            368999999999999998 577888888999999999999999999999999999988877766544

>d1r6va_ c.41.1.1 (A:) Fervidolysin {Fervidobacterium pennivorans [TaxId: 93466]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Fervidolysin
species: Fervidobacterium pennivorans [TaxId: 93466]

Probab=96.90  E-value=0.00019  Score=55.42  Aligned_cols=62  Identities=15%  Similarity=0.086  Sum_probs=47.3

Q ss_pred             cccccCCCcceeeeeC--------CCCCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLD--------QPYMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~--------g~~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+|+|..+|+++        + ..++..-++++.|.. +.++|.++|||...       +.....+|+....++|
T Consensus       218 ~GvAp~a~l~~~rv~~~~~~~~~~g-~~~~~~i~~ai~~a~~~g~~Vin~S~g~~~-------~~~~~~~ai~~a~~~g  288 (671)
T d1r6va_         218 VGVAPGAKIMPIVIFDDPALVGGNG-YVGDDYVAAGIIWATDHGAKVMNHSWGGWG-------YSYTMKEAFDYAMEHG  288 (671)
T ss_dssp             CCSCTTSEEEEEESBCCHHHHCTTS-BCCHHHHHHHHHHHHHTTCSEEEECEEBSC-------CCHHHHHHHHHHHHTT
T ss_pred             eeecCcceEEEEEecccccccCCCC-cccHHHHHHHHHHHHhCCCcEEeccccccc-------CChHHHHHHHHHHhcc
Confidence            6899999999999995        4 467777778888874 57999999998643       2344566777776665

>d1dbia_ c.41.1.1 (A:) Thermostable serine protease {Bacillus sp., AK.1 [TaxId: 1409]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermostable serine protease
species: Bacillus sp., AK.1 [TaxId: 1409]

Probab=96.88  E-value=0.00045  Score=47.19  Aligned_cols=63  Identities=14%  Similarity=-0.015  Sum_probs=42.0

Q ss_pred             cccccCCCcceeeeeCCC-CCChHHHhhhhcCCC-CcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~-~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .||||+|+|-.+|+++.. ..+...-++++.|.. +.+||.++|||....       ......|+....++|
T Consensus        91 ~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~a~~~g~~iin~S~g~~~~-------~~~~~~a~~~a~~~g  155 (280)
T d1dbia_          91 AGMAPNTRILAVRALDRNGSGTLSDIADAIIYAADSGAEVINLSLGCDCH-------TTTLENAVNYAWNKG  155 (280)
T ss_dssp             CCSSSSCEEEEEECCCTTSCCCHHHHHHHHHHHHHTTCSEEEECCSSCCC-------CHHHHHHHHHHHHTT
T ss_pred             eEEeccCEEEEEEEeCCCCCcCHHHHHHHHHHHHHcCCcEeecccccccc-------chhHHHHHHHHHHCC
Confidence            589999999999999652 233444455666543 579999999997543       233345555555544

>d1t1ga_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Bacillus novosp. MN-32, kumamolisin [TaxId: 198803]

Probab=96.57  E-value=0.00025  Score=48.01  Aligned_cols=49  Identities=16%  Similarity=0.208  Sum_probs=36.2

Q ss_pred             eecccccCCCcceeeeeCCCCCChHHHh--hhhcCCCCcceeEeCCCCCCCCC
Q psy13852          6 MQHELLQISHDGRIRMLDQPYMTDLIEA--NSMGHEPNLIDIYSASWGPTDDG   56 (78)
Q Consensus         6 m~~gvAy~a~i~GIRmL~g~~vtd~~EA--~Als~~~~~idIYS~SWGP~DdG   56 (78)
                      +.+||||+|+|..+|.....  .+..++  .++....+.++|.|+|||...+.
T Consensus        85 ~~~GvAp~A~i~~~~~~~~~--~~~~~~i~~~~~~~~~~~~Vin~S~G~~~~~  135 (357)
T d1t1ga_          85 VAGALAPGAKIAVYFAPNTD--AGFLNAITTAVHDPTHKPSIVSISWGGPEDS  135 (357)
T ss_dssp             HHHHHSTTSEEEEEECCSSH--HHHHHHHHHHHHCTTTCCSEEEECCCEEGGG
T ss_pred             cceeecccCeEEEEecccCC--CchHHHHHHHHHhhhcCCeEEecccccCcCc
Confidence            46899999999999998762  333332  23555667899999999986543

>d1ga6a_ c.41.1.2 (A:) Serine-carboxyl proteinase, SCP {Pseudomonas sp., sedolisin [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Serine-carboxyl proteinase, SCP
domain: Serine-carboxyl proteinase, SCP
species: Pseudomonas sp., sedolisin [TaxId: 306]

Probab=96.40  E-value=0.00022  Score=50.04  Aligned_cols=72  Identities=10%  Similarity=0.034  Sum_probs=48.1

Q ss_pred             eecccccCCCcceeeeeCCC-CCChHHHhhhhcCC--CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          6 MQHELLQISHDGRIRMLDQP-YMTDLIEANSMGHE--PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         6 m~~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~--~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      ..+||||++++--++.++.. ...+..=..++.|.  .+..||.|+|||........+.......+++++...+|
T Consensus        86 ~~~gvAp~a~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~Vis~S~g~~~~~~~~~~~~~~~~~a~~~a~~~G  160 (369)
T d1ga6a_          86 SIVGSAGGAVQQLLFYMADQSASGNTGLTQAFNQAVSDNVAKVINVSLGWCEADANADGTLQAEDRIFATAAAQG  160 (369)
T ss_dssp             HHHHHTTSCEEEEEEEEECTTSSTTHHHHHHHHHHHHHCCCSEEEECCCEEHHHHHHTTHHHHHHHHHHHHHHTT
T ss_pred             cccccccCceEEEEEEeCCCCCcchHHHHHHHHHHHHcCCCceeeccccccccCCCcchHHHHHHHHHHHHHHCC
Confidence            46789999999999988652 12233333455554  35689999999985544334455555567787777665

>d1thma_ c.41.1.1 (A:) Thermitase {Thermoactinomyces vulgaris [TaxId: 2026]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Thermitase
species: Thermoactinomyces vulgaris [TaxId: 2026]

Probab=95.84  E-value=0.0032  Score=42.15  Aligned_cols=48  Identities=21%  Similarity=0.034  Sum_probs=34.6

Q ss_pred             cccccCCCcceeeeeCCC-CCChHHHhhhhcCCC-CcceeEeCCCCCCCC
Q psy13852          8 HELLQISHDGRIRMLDQP-YMTDLIEANSMGHEP-NLIDIYSASWGPTDD   55 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~-~vtd~~EA~Als~~~-~~idIYS~SWGP~Dd   55 (78)
                      +||||+|+|-.+|++... .-+...-..++.+.. +.++|+++|||....
T Consensus        90 ~GvAp~a~l~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~i~n~S~G~~~~  139 (279)
T d1thma_          90 AGTAPKASILAVRVLDNSGSGTWTAVANGITYAADQGAKVISLSLGGTVG  139 (279)
T ss_dssp             CCSSTTCEEEEEECSCTTSCCCHHHHHHHHHHHHHTTCSEEEECCCBSSC
T ss_pred             cccCCcceEEEEEEEecCCCCcHHHHHHHHHHHhhcCCceeccccCcccc
Confidence            589999999999998652 223333445565553 579999999997543

>d1to2e_ c.41.1.1 (E:) Subtilisin {Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus amyloliquefaciens, Novo/BPN' [TaxId: 1390]

Probab=95.37  E-value=0.0038  Score=41.93  Aligned_cols=64  Identities=14%  Similarity=0.053  Sum_probs=40.6

Q ss_pred             ecccccCCCcceeeeeCCCC-CChHHHhhhhcCC-CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          7 QHELLQISHDGRIRMLDQPY-MTDLIEANSMGHE-PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g~~-vtd~~EA~Als~~-~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      .+||||+|+|-.+|+++... .+...-..++.|. .+.++|.++|||..+.-       .....++.....+|
T Consensus        81 ~~giAp~a~l~~~kv~~~~~~~~~~~~~~ai~~a~~~~~~v~n~S~g~~~~~-------~~~~~ai~~~~~~g  146 (281)
T d1to2e_          81 VLGVAPSASLYAVKVLGADGSGQYSWIINGIEWAIANNMDVINMSLGGPSGS-------AALKAAVDKAVASG  146 (281)
T ss_dssp             BCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHHHTTCSEEEECEEBSCCC-------HHHHHHHHHHHHTT
T ss_pred             cceeecccEEEEEEEeCCCCCcCHHHHHHHHHHHHhccccccccccCCCcch-------HHHHHHHHHHHhcC
Confidence            35799999999999997631 1112223445544 35899999999965432       23345666555554

>d1v6ca_ c.41.1.1 (A:) Alkaline serine protease Apa1 {Pseudoalteromonas sp. AS-11 [TaxId: 247492]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease Apa1
species: Pseudoalteromonas sp. AS-11 [TaxId: 247492]

Probab=94.33  E-value=0.022  Score=40.24  Aligned_cols=64  Identities=11%  Similarity=0.156  Sum_probs=42.7

Q ss_pred             ccccc--CCCcceeeeeCCC---CCChHHHhhhhcCCCCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcCC
Q psy13852          8 HELLQ--ISHDGRIRMLDQP---YMTDLIEANSMGHEPNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEHQ   78 (78)
Q Consensus         8 ~gvAy--~a~i~GIRmL~g~---~vtd~~EA~Als~~~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~GR   78 (78)
                      +|||+  +++|..+|.+...   ...++.+|-..-.+.+..||-++|||...       +..+..+|+....++|+
T Consensus        83 ~GvAp~~~~~l~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~vin~S~g~~~-------~~~~~~~a~~~~~~~g~  151 (435)
T d1v6ca_          83 VGVMPNQNANIHIVKVFNEAGWGYSSSLVAAIDTCVNSGGANVVTMSLGGSG-------STTTERNALNTHYNNGV  151 (435)
T ss_dssp             CCSSCSSCSEEEEEECEETTEECCSSCHHHHHHHHHHTTCCSEEEECCCBSC-------CBHHHHHHHHHHHHTTC
T ss_pred             EEEecccCceeeeeecccccccchhhhhhhHHHHHhhcccceEEecccCCCC-------CCHHHHhhhhhccccce
Confidence            57998  8889999987441   34456554333333567899999999743       23445677777777663

>d1wmda2 c.41.1.1 (A:1-318) Alkaline serine protease kp-43, N-terminal domain {Bacillus sp. KSM-KP43 [TaxId: 109322]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Alkaline serine protease kp-43, N-terminal domain
species: Bacillus sp. KSM-KP43 [TaxId: 109322]

Probab=94.08  E-value=0.0075  Score=40.24  Aligned_cols=51  Identities=12%  Similarity=0.105  Sum_probs=33.6

Q ss_pred             ecccccCCCcceeeeeCCCC-C--ChHHHhhhhcCC-CCcceeEeCCCCCCCCCc
Q psy13852          7 QHELLQISHDGRIRMLDQPY-M--TDLIEANSMGHE-PNLIDIYSASWGPTDDGK   57 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g~~-v--td~~EA~Als~~-~~~idIYS~SWGP~DdG~   57 (78)
                      .+|||++|+|-.+|+++.+. .  ....-+.++.+. .+.++|.++|||+..++.
T Consensus        83 ~~GvAp~a~l~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~g~~~~~~  137 (318)
T d1wmda2          83 NKGMAPQANLVFQSIMDSGGGLGGLPSNLQTLFSQAYSAGARIHTNSWGAAVNGA  137 (318)
T ss_dssp             SCCSSTTSEEEEEECCCTTSSCTTSCSSHHHHHHHHHHTTCSEEEECCCBCCTTC
T ss_pred             cchhhhcccceeeeeeeecccccccchhhHHHHHHHHhcCCceeecccccccccc
Confidence            37899999999999987521 1  111111233322 357899999999977664

>d1gcia_ c.41.1.1 (A:) Subtilisin {Bacillus lentus [TaxId: 1467]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus lentus [TaxId: 1467]

Probab=92.73  E-value=0.058  Score=35.71  Aligned_cols=64  Identities=11%  Similarity=0.048  Sum_probs=40.7

Q ss_pred             ecccccCCCcceeeeeCCCC-CChHHHhhhhcCC-CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          7 QHELLQISHDGRIRMLDQPY-MTDLIEANSMGHE-PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g~~-vtd~~EA~Als~~-~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      ..|+||+++|-.+|+++... .....-..++.|. .+.++|.++|||...       +.....+++.....+|
T Consensus        79 ~~giap~a~i~~~~v~~~~~~~~~~~~~~ai~~~~~~~~~~in~s~g~~~-------~~~~~~~a~~~a~~~g  144 (269)
T d1gcia_          79 VLGVAPSAELYAVKVLGASGSGSVSSIAQGLEWAGNNGMHVANLSLGSPS-------PSATLEQAVNSATSRG  144 (269)
T ss_dssp             CCCSSTTCEEEEEECBCTTSCBCHHHHHHHHHHHHHTTCSEEEECCCBSS-------CCHHHHHHHHHHHHTT
T ss_pred             ccccCCceEEEEEEEecCCCCccHHHHHHHHHHHHhcccccccccccccc-------ccchHHHHHHhhccCc
Confidence            35899999999999987631 2222233455554 468999999999643       2333445555544443

>d1r0re_ c.41.1.1 (E:) Subtilisin {Bacillus subtilis, carlsberg [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Subtilisin
species: Bacillus subtilis, carlsberg [TaxId: 1423]

Probab=92.60  E-value=0.036  Score=36.65  Aligned_cols=49  Identities=10%  Similarity=0.131  Sum_probs=33.9

Q ss_pred             ecccccCCCcceeeeeCCC---CCChHHHhhhhcCCCCcceeEeCCCCCCCCC
Q psy13852          7 QHELLQISHDGRIRMLDQP---YMTDLIEANSMGHEPNLIDIYSASWGPTDDG   56 (78)
Q Consensus         7 ~~gvAy~a~i~GIRmL~g~---~vtd~~EA~Als~~~~~idIYS~SWGP~DdG   56 (78)
                      ..||||+|+|..+++++..   ...++.+|-.... .+.++|+++||+.....
T Consensus        80 ~~gvap~a~i~~~~~~~~~~~~~~~~i~~ai~~a~-~~~~~i~n~S~~~~~~~  131 (274)
T d1r0re_          80 VLGVAPSVSLYAVKVLNSSGSGSYSGIVSGIEWAT-TNGMDVINMSLGGASGS  131 (274)
T ss_dssp             CCCSSTTSEEEEEECSCTTSEECHHHHHHHHHHHH-HTTCSEEEECEEBSSCC
T ss_pred             ccccCCCcEEEEEEEeCCCCCcCHHHHHHHHHHHH-hcCCceeccccccccch
Confidence            3579999999999999873   1234444333222 26899999999875543

>d2ixta1 c.41.1.1 (A:1-309) Sphericase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: Subtilisin-like
superfamily: Subtilisin-like
family: Subtilases
domain: Sphericase
species: Bacillus sphaericus [TaxId: 1421]

Probab=88.74  E-value=0.13  Score=33.90  Aligned_cols=63  Identities=13%  Similarity=-0.008  Sum_probs=37.4

Q ss_pred             cccccCCCcceeeeeCCCCC-ChHHHhhhhcCC------CCcceeEeCCCCCCCCCccccCchHHHHHHHHHHHhcC
Q psy13852          8 HELLQISHDGRIRMLDQPYM-TDLIEANSMGHE------PNLIDIYSASWGPTDDGKTVDGPRNATMRAIVRGVNEH   77 (78)
Q Consensus         8 ~gvAy~a~i~GIRmL~g~~v-td~~EA~Als~~------~~~idIYS~SWGP~DdG~t~~gP~~l~~~Al~~Gv~~G   77 (78)
                      +||||+|++-.+|+++.... ....-..++.|.      ....+|.++||++...       ..+...++....++|
T Consensus        91 ~GvAp~a~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~v~~~s~~~~~~-------~~~~~~~~~~~~~~g  160 (309)
T d2ixta1          91 YGVAPDADLWAYKVLLDSGSGYSDDIAAAIRHAADQATATGTKTIISMSLGSSAN-------NSLISSAVNYAYSKG  160 (309)
T ss_dssp             BCSCTTSEEEEEECSCTTSCCCHHHHHHHHHHHHHHHHHHTCCEEEEECCCBSSC-------CHHHHHHHHHHHHTT
T ss_pred             hhhhhhccceeeeeecCCCCccccccccccccccccccccccccccccccccccc-------ccchhccccchhcCC
Confidence            68999999999999876311 222222333322      2345789999987433       334445555554443