Psyllid ID: psy13856
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 271 | 2.2.26 [Sep-21-2011] | |||||||
| P55735 | 322 | Protein SEC13 homolog OS= | yes | N/A | 0.490 | 0.413 | 0.514 | 4e-31 | |
| Q9D1M0 | 322 | Protein SEC13 homolog OS= | yes | N/A | 0.490 | 0.413 | 0.514 | 5e-31 | |
| Q5XFW8 | 322 | Protein SEC13 homolog OS= | yes | N/A | 0.490 | 0.413 | 0.514 | 6e-31 | |
| Q3ZCC9 | 322 | Protein SEC13 homolog OS= | yes | N/A | 0.490 | 0.413 | 0.507 | 6e-31 | |
| Q54DS8 | 301 | Protein transport protein | yes | N/A | 0.623 | 0.561 | 0.418 | 8e-29 | |
| Q4PCB8 | 364 | Protein transport protein | N/A | N/A | 0.376 | 0.280 | 0.448 | 1e-23 | |
| P0CS50 | 339 | Protein transport protein | yes | N/A | 0.402 | 0.321 | 0.479 | 2e-23 | |
| P0CS51 | 339 | Protein transport protein | N/A | N/A | 0.402 | 0.321 | 0.479 | 2e-23 | |
| O94319 | 297 | Protein transport protein | yes | N/A | 0.494 | 0.451 | 0.460 | 5e-23 | |
| Q5AEF2 | 298 | Protein transport protein | N/A | N/A | 0.372 | 0.338 | 0.519 | 3e-22 |
| >sp|P55735|SEC13_HUMAN Protein SEC13 homolog OS=Homo sapiens GN=SEC13 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 135 bits (339), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 91/136 (66%), Gaps = 3/136 (2%)
Query: 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158
P+ +P Y K S ++ L + +W EE KLE HSDWVRDVAWAPS GL
Sbjct: 171 PSGQKPNYIK-RFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229
Query: 159 MIASCSQDRKVIIWTSNDYV--TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216
IASCSQD +V IWT +D TW+P +++ F+DVVW+VSWS+T +IL VS GDN V+LW
Sbjct: 230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289
Query: 217 KENTDGAWQCITEMGK 232
KE+ DG W CI+++ K
Sbjct: 290 KESVDGQWVCISDVNK 305
|
Functions as a component of the nuclear pore complex (NPC) and the COPII coat. At the endoplasmic reticulum, SEC13 is involved in the biogenesis of COPII-coated vesicles. Homo sapiens (taxid: 9606) |
| >sp|Q9D1M0|SEC13_MOUSE Protein SEC13 homolog OS=Mus musculus GN=Sec13 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 90/136 (66%), Gaps = 3/136 (2%)
Query: 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158
P+ +P Y K S ++ L R +W EE KLE HSDWVRDVAWAPS GL
Sbjct: 171 PSGQKPNYIK-KFASGGCDNLIKLWREEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229
Query: 159 MIASCSQDRKVIIWTSNDYV--TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216
IASCSQD +V IWT +D W+P +++ F+DVVW+VSWS+T +IL VS GDN V+LW
Sbjct: 230 TIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289
Query: 217 KENTDGAWQCITEMGK 232
KE+ DG W CI+++ K
Sbjct: 290 KESVDGQWVCISDVNK 305
|
Functions as a component of the nuclear pore complex (NPC) and the COPII coat. At the endoplasmic reticulum, SEC13 is involved in the biogenesis of COPII-coated vesicles. Mus musculus (taxid: 10090) |
| >sp|Q5XFW8|SEC13_RAT Protein SEC13 homolog OS=Rattus norvegicus GN=Sec13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (338), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 70/136 (51%), Positives = 90/136 (66%), Gaps = 3/136 (2%)
Query: 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158
P+ +P Y K S ++ L R +W EE KLE HSDWVRDVAWAPS GL
Sbjct: 171 PSGQKPNYIK-KFASGGCDNLIKLWREEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229
Query: 159 MIASCSQDRKVIIWTSNDYV--TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216
IASCSQD +V IWT +D W+P +++ F+DVVW+VSWS+T +IL VS GDN V+LW
Sbjct: 230 TIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289
Query: 217 KENTDGAWQCITEMGK 232
KE+ DG W CI+++ K
Sbjct: 290 KESVDGQWVCISDVNK 305
|
Functions as a component of the nuclear pore complex (NPC) and the COPII coat. At the endoplasmic reticulum, SEC13 is involved in the biogenesis of COPII-coated vesicles. Rattus norvegicus (taxid: 10116) |
| >sp|Q3ZCC9|SEC13_BOVIN Protein SEC13 homolog OS=Bos taurus GN=SEC13 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 134 bits (337), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 69/136 (50%), Positives = 91/136 (66%), Gaps = 3/136 (2%)
Query: 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158
P+ +P Y K S ++ L + +W EE KLE HSDWVRDVAWAPS GL
Sbjct: 171 PSGQKPNYIK-KFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229
Query: 159 MIASCSQDRKVIIWTSNDYV--TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216
IASCSQD +V +WT +D TW+P +++ F+DVVW+VSWS+T +IL VS GDN V+LW
Sbjct: 230 TIASCSQDGRVFVWTCDDASGNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289
Query: 217 KENTDGAWQCITEMGK 232
KE+ DG W CI+++ K
Sbjct: 290 KESVDGQWVCISDVNK 305
|
Functions as a component of the nuclear pore complex (NPC) and the COPII coat. At the endoplasmic reticulum, SEC13 is involved in the biogenesis of COPII-coated vesicles. Bos taurus (taxid: 9913) |
| >sp|Q54DS8|SEC13_DICDI Protein transport protein SEC13 OS=Dictyostelium discoideum GN=sec13 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 74/177 (41%), Positives = 98/177 (55%), Gaps = 8/177 (4%)
Query: 58 GSVYLRRESNKAGALSPKLNRSATS----SFHEAAKHLGTVQSSSPACLQPKYFKLTVYS 113
GSV + +N K+ S S+ AA V S++ P +T
Sbjct: 126 GSVTIHNYNNNVWEAPQKIQVSQIGVNSVSWSPAAIPTSLVNSANTIIPAPIKRIVTGSC 185
Query: 114 TKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT 173
L +I V DKWI + +LE+H DWVRDVAWAP+ GL IASCSQDR VI+WT
Sbjct: 186 DNLIKIFKNVE----DKWILDKQLEDHKDWVRDVAWAPNIGLPYSKIASCSQDRSVIVWT 241
Query: 174 SNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230
++ W+ + FDD+VW VSWS+ G+IL VSCGDN V+LWKE D W+ I+ +
Sbjct: 242 QDENGVWSGKPLPKFDDIVWRVSWSVIGNILAVSCGDNQVTLWKEGVDSEWKLISHV 298
|
Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q4PCB8|SEC13_USTMA Protein transport protein SEC13 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=SEC13 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 52/116 (44%), Positives = 75/116 (64%), Gaps = 14/116 (12%)
Query: 129 DKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND-YVTWTPFIMNT 187
++++E L+ HSDWVRDVA+AP+ GL + +A+ SQDR V+IWT + W+ +N
Sbjct: 247 NRFVEVEALQGHSDWVRDVAFAPNVGLPRSYLATASQDRTVLIWTQDSPTAAWSKTALNP 306
Query: 188 -------------FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230
F D VW VSWS++G++L VSCGD ++LWKEN GAW+C++EM
Sbjct: 307 ISASAAAGAGSNKFPDTVWRVSWSVSGNVLAVSCGDGKITLWKENLKGAWECVSEM 362
|
Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution. Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631) |
| >sp|P0CS50|SEC13_CRYNJ Protein transport protein SEC13 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=SEC13 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 72/123 (58%), Gaps = 14/123 (11%)
Query: 122 LVRICGGD----KWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII------ 171
L+RI G D KW EE ++ H DWVRDVAWAP+ GL IAS SQDR V+I
Sbjct: 215 LIRIWGFDEEQKKWTEEETIKGHEDWVRDVAWAPNIGLPGMYIASASQDRTVLIHSRPSP 274
Query: 172 ---WTSNDYVTWTPFIMNT-FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCI 227
WTS + P + F D VW VSWSL G++L VSCGD VSLWKE W+C+
Sbjct: 275 SSSWTSAPLLPSLPQSQDPHFPDAVWRVSWSLAGNVLAVSCGDGKVSLWKEGVGKGWECV 334
Query: 228 TEM 230
++
Sbjct: 335 SDF 337
|
Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution. Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684) |
| >sp|P0CS51|SEC13_CRYNB Protein transport protein SEC13 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=SEC13 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 59/123 (47%), Positives = 72/123 (58%), Gaps = 14/123 (11%)
Query: 122 LVRICGGD----KWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII------ 171
L+RI G D KW EE ++ H DWVRDVAWAP+ GL IAS SQDR V+I
Sbjct: 215 LIRIWGFDEEQKKWTEEETIKGHEDWVRDVAWAPNIGLPGMYIASASQDRTVLIHSRPSP 274
Query: 172 ---WTSNDYVTWTPFIMNT-FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCI 227
WTS + P + F D VW VSWSL G++L VSCGD VSLWKE W+C+
Sbjct: 275 SSSWTSAPLLPSLPQSQDPHFPDAVWRVSWSLAGNVLAVSCGDGKVSLWKEGVGKGWECV 334
Query: 228 TEM 230
++
Sbjct: 335 SDF 337
|
Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution. Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643) |
| >sp|O94319|SEC13_SCHPO Protein transport protein sec13 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec13 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 108 bits (269), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 65/141 (46%), Positives = 79/141 (56%), Gaps = 7/141 (4%)
Query: 92 GTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAP 151
G+V SPA PK T L +I G + WI E L H DW RDVAWAP
Sbjct: 160 GSVVGQSPAA-GPKKLA-TAGCDNLVKIWAF--DAGVNNWILEDTLAGHVDWTRDVAWAP 215
Query: 152 SWGLSKCMIASCSQDRKVIIWTSNDYVTW--TPFIMNTFDDVVWNVSWSLTGDILTVSCG 209
S GL+K +AS SQD+ V IWT W TP F D+ W VSWSL+G+IL VSCG
Sbjct: 216 SVGLTKTYLASASQDKNVFIWTKEGDGPWQKTPLTEEKFPDIAWRVSWSLSGNILAVSCG 275
Query: 210 DNSVSLWKENTDGAWQCITEM 230
DN V L+KE+ + WQ + E+
Sbjct: 276 DNKVYLFKESQN-KWQLLNEL 295
|
Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution (By similarity). Involved in septum formation. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q5AEF2|SEC13_CANAL Protein transport protein SEC13 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=SEC13 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 54/104 (51%), Positives = 69/104 (66%), Gaps = 3/104 (2%)
Query: 131 WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIM--NTF 188
++EE KLE H+DWVRDVAW+PS L + IA+ SQDR V+IWT + W ++ F
Sbjct: 196 YVEEAKLEGHTDWVRDVAWSPS-NLIRSYIATASQDRTVLIWTQDRDGKWQKQLLTEEKF 254
Query: 189 DDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK 232
DV W SWSL+G+IL VS GDN VSLWKEN G W+ E+ +
Sbjct: 255 PDVCWRCSWSLSGNILAVSGGDNKVSLWKENLQGKWESAGEVDQ 298
|
Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. It also functions as a component of the nuclear pore complex (NPC). NPC components, collectively referred to as nucleoporins (NUPs), can play the role of both NPC structural components and of docking or interaction partners for transiently associated nuclear transport factors. SEC13 is required for efficient mRNA export from the nucleus to the cytoplasm and for correct nuclear pore biogenesis and distribution. Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 271 | ||||||
| 242017223 | 361 | protein transport protein sec13, putativ | 0.413 | 0.310 | 0.677 | 2e-40 | |
| 340713861 | 311 | PREDICTED: protein SEC13 homolog [Bombus | 0.413 | 0.360 | 0.677 | 6e-40 | |
| 156540469 | 311 | PREDICTED: protein SEC13 homolog [Nasoni | 0.413 | 0.360 | 0.677 | 1e-39 | |
| 383859895 | 311 | PREDICTED: protein SEC13 homolog [Megach | 0.413 | 0.360 | 0.677 | 1e-39 | |
| 110756630 | 311 | PREDICTED: protein SEC13 homolog [Apis m | 0.413 | 0.360 | 0.677 | 2e-39 | |
| 307201502 | 313 | Protein SEC13-like protein [Harpegnathos | 0.413 | 0.357 | 0.638 | 3e-39 | |
| 307177449 | 313 | Protein SEC13-like protein [Camponotus f | 0.413 | 0.357 | 0.644 | 3e-39 | |
| 389615099 | 184 | protein transport protein sec13, partial | 0.387 | 0.570 | 0.704 | 6e-38 | |
| 357630898 | 313 | putative protein transport protein sec13 | 0.402 | 0.348 | 0.678 | 7e-38 | |
| 332025688 | 310 | Protein SEC13-like protein [Acromyrmex e | 0.409 | 0.358 | 0.615 | 3e-37 |
| >gi|242017223|ref|XP_002429091.1| protein transport protein sec13, putative [Pediculus humanus corporis] gi|212513955|gb|EEB16353.1| protein transport protein sec13, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 172 bits (436), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 98/118 (83%), Gaps = 6/118 (5%)
Query: 128 GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187
GD+WIEE KLE HSDWVRDVAWAPS GL K +IASCSQDR+VIIW+S+D + WTP ++NT
Sbjct: 244 GDRWIEEAKLEVHSDWVRDVAWAPSLGLPKSLIASCSQDRRVIIWSSDDNINWTPTVLNT 303
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK------TSEQRAI 239
FDDVVWNVSWSLTG+IL+VS GDN VSLW+EN +G W CI+E+ K +++QRA+
Sbjct: 304 FDDVVWNVSWSLTGNILSVSGGDNKVSLWRENNEGQWMCISEVNKGQGTVSSNDQRAV 361
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340713861|ref|XP_003395453.1| PREDICTED: protein SEC13 homolog [Bombus terrestris] gi|350409642|ref|XP_003488802.1| PREDICTED: protein SEC13 homolog [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 170 bits (431), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 94/118 (79%), Gaps = 6/118 (5%)
Query: 128 GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187
GD+WIEE KLE HSDW+RDVAWAP+ G SK +ASCSQDR+VI+WTSNDY +WTP I+N
Sbjct: 194 GDRWIEEDKLEAHSDWIRDVAWAPAVGPSKAALASCSQDRRVIVWTSNDYTSWTPTILNV 253
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK------TSEQRAI 239
FDDV+WNVSWSLTG IL VS GDN VSLW+ENT+G W CI+E K +EQRA+
Sbjct: 254 FDDVIWNVSWSLTGGILAVSGGDNKVSLWRENTEGQWTCISETNKGQGNLNNTEQRAL 311
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156540469|ref|XP_001599879.1| PREDICTED: protein SEC13 homolog [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 94/118 (79%), Gaps = 6/118 (5%)
Query: 128 GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187
GDKWIEETKLE HSDWVRDVAWAP+ G + +ASCSQDR+VI+WTS DY +WTP I+N
Sbjct: 194 GDKWIEETKLEAHSDWVRDVAWAPAVGPPRAALASCSQDRRVIVWTSTDYASWTPNILNV 253
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK------TSEQRAI 239
FDDVVWNVSWSLTG IL VS GDN VSLW+ENT+G W CI+E+ K ++QRA+
Sbjct: 254 FDDVVWNVSWSLTGGILAVSGGDNQVSLWRENTEGQWICISELNKGQGNINNTDQRAL 311
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383859895|ref|XP_003705427.1| PREDICTED: protein SEC13 homolog [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 169 bits (427), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 94/118 (79%), Gaps = 6/118 (5%)
Query: 128 GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187
GD+WIEE KLE HSDWVRDVAWAP+ G SK +ASCSQDR+VI+WTSNDY +WTP I+N
Sbjct: 194 GDRWIEEDKLEAHSDWVRDVAWAPAVGPSKAALASCSQDRRVIVWTSNDYTSWTPTILNV 253
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK------TSEQRAI 239
FDDV+WNVSWSLTG IL VS GDN VSLW+ENT+G W CI+E K ++QRA+
Sbjct: 254 FDDVIWNVSWSLTGGILAVSGGDNKVSLWRENTEGQWICISETNKGQGNLNNTDQRAL 311
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|110756630|ref|XP_393516.3| PREDICTED: protein SEC13 homolog [Apis mellifera] gi|380024897|ref|XP_003696225.1| PREDICTED: protein SEC13 homolog [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 168 bits (426), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 80/118 (67%), Positives = 94/118 (79%), Gaps = 6/118 (5%)
Query: 128 GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187
GD+WIEE KLE HSDWVRDVAWAP+ G SK +ASCSQDR+VI+WTSNDY +WTP I+N
Sbjct: 194 GDRWIEEDKLEAHSDWVRDVAWAPAVGPSKAALASCSQDRRVIVWTSNDYTSWTPTILNV 253
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK------TSEQRAI 239
FDDV+WNVSWSLTG IL VS GDN VSLW+ENT+G W CI+E K ++QRA+
Sbjct: 254 FDDVIWNVSWSLTGGILAVSGGDNKVSLWRENTEGQWICISETNKGQGNLNNTDQRAL 311
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307201502|gb|EFN81265.1| Protein SEC13-like protein [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/119 (63%), Positives = 95/119 (79%), Gaps = 7/119 (5%)
Query: 128 GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187
GD+W+EE KLE HSDWVRDVAWAP+ G S+ +ASCSQDR+V++WTSNDY +W P I+N
Sbjct: 195 GDRWVEENKLEAHSDWVRDVAWAPAVGPSRAALASCSQDRRVVVWTSNDYASWIPNILNV 254
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK-------TSEQRAI 239
FDDV+WNVSWSLTG IL VS GDN VSLW+EN++G W CI+E+ K T++QRA+
Sbjct: 255 FDDVIWNVSWSLTGGILAVSGGDNKVSLWRENSEGQWACISELNKGQGNLNSTADQRAL 313
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307177449|gb|EFN66576.1| Protein SEC13-like protein [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 167 bits (424), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 76/118 (64%), Positives = 94/118 (79%), Gaps = 6/118 (5%)
Query: 128 GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187
GD+WIEE KLE HSDWVRDVAWAP+ G S+ +ASCSQDR+V++WTSNDY +WTP ++N
Sbjct: 196 GDRWIEENKLEAHSDWVRDVAWAPAVGPSRAALASCSQDRRVVVWTSNDYTSWTPNVLNV 255
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK------TSEQRAI 239
FDDV+WNVSWSLTG IL VS GDN VSLW+EN++G W CI+E+ K +QRA+
Sbjct: 256 FDDVIWNVSWSLTGGILAVSGGDNKVSLWRENSEGQWACISELNKDQGNPNNPDQRAL 313
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|389615099|dbj|BAM20542.1| protein transport protein sec13, partial [Papilio polytes] | Back alignment and taxonomy information |
|---|
Score = 163 bits (413), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 74/105 (70%), Positives = 89/105 (84%)
Query: 128 GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187
GD+W+EE +LE H DWVRDVAWAPS GL MIASCSQD++V+IW+S+D V+WTP I+NT
Sbjct: 67 GDQWVEENRLEMHMDWVRDVAWAPSLGLQHSMIASCSQDKRVVIWSSDDNVSWTPVILNT 126
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK 232
FDDVVW+VSWSLTG+IL VS GDN VSLW+EN DG W CI+E+ K
Sbjct: 127 FDDVVWSVSWSLTGNILAVSGGDNKVSLWRENADGQWLCISEVAK 171
|
Source: Papilio polytes Species: Papilio polytes Genus: Papilio Family: Papilionidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357630898|gb|EHJ78717.1| putative protein transport protein sec13 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 163 bits (413), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 74/109 (67%), Positives = 91/109 (83%)
Query: 128 GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187
GD+WIEE +LE H DWVRDVAWAPS GL + MIASCSQD++V+IW+S+D V+W+P I+NT
Sbjct: 196 GDQWIEENRLEMHMDWVRDVAWAPSLGLQRSMIASCSQDKRVVIWSSDDNVSWSPTILNT 255
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQ 236
FDDV+W+VSWSLTG+IL VS GDN VSLW+EN DG W CI+E+ K Q
Sbjct: 256 FDDVIWSVSWSLTGNILAVSGGDNKVSLWRENADGQWLCISEVAKGLGQ 304
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332025688|gb|EGI65847.1| Protein SEC13-like protein [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 161 bits (407), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 72/117 (61%), Positives = 91/117 (77%), Gaps = 6/117 (5%)
Query: 128 GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187
GD+WIEE KLE HSDWVRDVAWAP+ G S+ +ASCSQDR+++IWTSNDY +WTP ++N
Sbjct: 194 GDRWIEENKLEAHSDWVRDVAWAPAVGPSRATLASCSQDRRIVIWTSNDYTSWTPKVLNV 253
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK------TSEQRA 238
FDDV+WN+ WSLTG IL V GDN VSLW+EN++G W CI+E+ + +QRA
Sbjct: 254 FDDVIWNIGWSLTGGILAVCGGDNKVSLWRENSEGQWACISELNQDQGNLNNPDQRA 310
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 271 | ||||||
| FB|FBgn0024509 | 386 | Sec13 "Sec13 ortholog (S. cere | 0.354 | 0.248 | 0.628 | 1.1e-32 | |
| UNIPROTKB|F1PDM3 | 322 | SEC13 "Uncharacterized protein | 0.490 | 0.413 | 0.514 | 1.4e-32 | |
| UNIPROTKB|P55735 | 322 | SEC13 "Protein SEC13 homolog" | 0.490 | 0.413 | 0.514 | 1.4e-32 | |
| ZFIN|ZDB-GENE-040426-2649 | 320 | sec13 "SEC13 homolog (S. cerev | 0.487 | 0.412 | 0.522 | 1.8e-32 | |
| UNIPROTKB|Q3ZCC9 | 322 | SEC13 "Protein SEC13 homolog" | 0.490 | 0.413 | 0.507 | 1.8e-32 | |
| MGI|MGI:99832 | 322 | Sec13 "SEC13 homolog (S. cerev | 0.490 | 0.413 | 0.514 | 2.9e-32 | |
| RGD|1359555 | 322 | Sec13 "SEC13 homolog (S. cerev | 0.490 | 0.413 | 0.514 | 2.9e-32 | |
| UNIPROTKB|E1BVC4 | 320 | SEC13 "Uncharacterized protein | 0.380 | 0.321 | 0.6 | 3.7e-32 | |
| DICTYBASE|DDB_G0292052 | 301 | sec13 "putative transport prot | 0.715 | 0.644 | 0.388 | 6.9e-31 | |
| POMBASE|SPBC215.15 | 297 | sec13 "COPII-coated vesicle co | 0.490 | 0.447 | 0.471 | 5.2e-26 |
| FB|FBgn0024509 Sec13 "Sec13 ortholog (S. cerevisiae)" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 61/97 (62%), Positives = 78/97 (80%)
Query: 129 DKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSN-DYVTWTPFIMNT 187
D+W+EE +LE HSDWVRDVAWAPS GL + IA+ SQDR VI+W+SN D WT +++T
Sbjct: 230 DRWVEEHRLEAHSDWVRDVAWAPSIGLPRSQIATASQDRHVIVWSSNADLSEWTSTVLHT 289
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAW 224
FDD VW++SWS TG+IL V+ GDN+V+LWKENT+G W
Sbjct: 290 FDDAVWSISWSTTGNILAVTGGDNNVTLWKENTEGQW 326
|
|
| UNIPROTKB|F1PDM3 SEC13 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 70/136 (51%), Positives = 91/136 (66%)
Query: 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158
P+ +P Y K S ++ L + +W EE KLE HSDWVRDVAWAPS GL
Sbjct: 171 PSGQKPNYIKKFA-SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229
Query: 159 MIASCSQDRKVIIWTSNDYV--TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216
IASCSQD +V IWT +D TW+P +++ F+DVVW+VSWS+T +IL VS GDN V+LW
Sbjct: 230 TIASCSQDGRVFIWTCDDTSGNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289
Query: 217 KENTDGAWQCITEMGK 232
KE+ DG W CI+++ K
Sbjct: 290 KESVDGQWVCISDVNK 305
|
|
| UNIPROTKB|P55735 SEC13 "Protein SEC13 homolog" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 356 (130.4 bits), Expect = 1.4e-32, P = 1.4e-32
Identities = 70/136 (51%), Positives = 91/136 (66%)
Query: 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158
P+ +P Y K S ++ L + +W EE KLE HSDWVRDVAWAPS GL
Sbjct: 171 PSGQKPNYIKRFA-SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229
Query: 159 MIASCSQDRKVIIWTSNDYV--TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216
IASCSQD +V IWT +D TW+P +++ F+DVVW+VSWS+T +IL VS GDN V+LW
Sbjct: 230 TIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289
Query: 217 KENTDGAWQCITEMGK 232
KE+ DG W CI+++ K
Sbjct: 290 KESVDGQWVCISDVNK 305
|
|
| ZFIN|ZDB-GENE-040426-2649 sec13 "SEC13 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 71/136 (52%), Positives = 91/136 (66%)
Query: 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158
P +P Y K V S ++ L + G +W E+ KLE HSDWVRDV WAPS GL
Sbjct: 171 PTGQKPNYIKRFV-SGGCDNLVKLWKEEDG-QWKEDQKLEAHSDWVRDVGWAPSIGLPTS 228
Query: 159 MIASCSQDRKVIIWTSNDYV--TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216
IASCSQD +V IWT +D TWT +++ F+DVVW+VSWS+TG+IL VS GDN V+LW
Sbjct: 229 TIASCSQDGRVFIWTCDDPAGNTWTAKLLHKFNDVVWHVSWSITGNILAVSGGDNKVTLW 288
Query: 217 KENTDGAWQCITEMGK 232
KE+ DG W CI+++ K
Sbjct: 289 KESVDGQWACISDVNK 304
|
|
| UNIPROTKB|Q3ZCC9 SEC13 "Protein SEC13 homolog" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 69/136 (50%), Positives = 91/136 (66%)
Query: 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158
P+ +P Y K S ++ L + +W EE KLE HSDWVRDVAWAPS GL
Sbjct: 171 PSGQKPNYIKKFA-SGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229
Query: 159 MIASCSQDRKVIIWTSNDYV--TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216
IASCSQD +V +WT +D TW+P +++ F+DVVW+VSWS+T +IL VS GDN V+LW
Sbjct: 230 TIASCSQDGRVFVWTCDDASGNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289
Query: 217 KENTDGAWQCITEMGK 232
KE+ DG W CI+++ K
Sbjct: 290 KESVDGQWVCISDVNK 305
|
|
| MGI|MGI:99832 Sec13 "SEC13 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 70/136 (51%), Positives = 90/136 (66%)
Query: 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158
P+ +P Y K S ++ L R +W EE KLE HSDWVRDVAWAPS GL
Sbjct: 171 PSGQKPNYIKKFA-SGGCDNLIKLWREEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229
Query: 159 MIASCSQDRKVIIWTSNDYV--TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216
IASCSQD +V IWT +D W+P +++ F+DVVW+VSWS+T +IL VS GDN V+LW
Sbjct: 230 TIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289
Query: 217 KENTDGAWQCITEMGK 232
KE+ DG W CI+++ K
Sbjct: 290 KESVDGQWVCISDVNK 305
|
|
| RGD|1359555 Sec13 "SEC13 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 70/136 (51%), Positives = 90/136 (66%)
Query: 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158
P+ +P Y K S ++ L R +W EE KLE HSDWVRDVAWAPS GL
Sbjct: 171 PSGQKPNYIKKFA-SGGCDNLIKLWREEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTS 229
Query: 159 MIASCSQDRKVIIWTSNDYV--TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216
IASCSQD +V IWT +D W+P +++ F+DVVW+VSWS+T +IL VS GDN V+LW
Sbjct: 230 TIASCSQDGRVFIWTCDDASGNMWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLW 289
Query: 217 KENTDGAWQCITEMGK 232
KE+ DG W CI+++ K
Sbjct: 290 KESVDGQWVCISDVNK 305
|
|
| UNIPROTKB|E1BVC4 SEC13 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 63/105 (60%), Positives = 80/105 (76%)
Query: 130 KWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV--TWTPFIMNT 187
+W EE KLE HSDWVRDVAWAPS GL IASCSQD +V IWT +D +W+P +++
Sbjct: 200 QWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDDASGSSWSPKLLHK 259
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK 232
F+DVVW+VSWS+T +IL VS GDN V+LWKE+ DG W CI+++ K
Sbjct: 260 FNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGLWACISDVNK 304
|
|
| DICTYBASE|DDB_G0292052 sec13 "putative transport protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
Identities = 78/201 (38%), Positives = 106/201 (52%)
Query: 35 GHTLI--SCDTQAH-IGIRSTISLLQGSVYLRRESNKAGALSPKLNRS--ATSSFHEAAK 89
GH L S H G+ + GSV + +N K+ S +S +
Sbjct: 100 GHELSVNSISWAPHEFGLSLACASSDGSVTIHNYNNNVWEAPQKIQVSQIGVNSVSWSPA 159
Query: 90 HLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAW 149
+ T +S + P K V + I I + DKWI + +LE+H DWVRDVAW
Sbjct: 160 AIPTSLVNSANTIIPAPIKRIVTGSCDNLIKIFKNV--EDKWILDKQLEDHKDWVRDVAW 217
Query: 150 APSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG 209
AP+ GL IASCSQDR VI+WT ++ W+ + FDD+VW VSWS+ G+IL VSCG
Sbjct: 218 APNIGLPYSKIASCSQDRSVIVWTQDENGVWSGKPLPKFDDIVWRVSWSVIGNILAVSCG 277
Query: 210 DNSVSLWKENTDGAWQCITEM 230
DN V+LWKE D W+ I+ +
Sbjct: 278 DNQVTLWKEGVDSEWKLISHV 298
|
|
| POMBASE|SPBC215.15 sec13 "COPII-coated vesicle component Sec13" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 67/142 (47%), Positives = 81/142 (57%)
Query: 92 GTVQSSSPACLQPKYFKL-TVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWA 150
G+V SPA PK KL T L +I G + WI E L H DW RDVAWA
Sbjct: 160 GSVVGQSPAA-GPK--KLATAGCDNLVKIWAFD--AGVNNWILEDTLAGHVDWTRDVAWA 214
Query: 151 PSWGLSKCMIASCSQDRKVIIWTSNDYVTW--TPFIMNTFDDVVWNVSWSLTGDILTVSC 208
PS GL+K +AS SQD+ V IWT W TP F D+ W VSWSL+G+IL VSC
Sbjct: 215 PSVGLTKTYLASASQDKNVFIWTKEGDGPWQKTPLTEEKFPDIAWRVSWSLSGNILAVSC 274
Query: 209 GDNSVSLWKENTDGAWQCITEM 230
GDN V L+KE+ + WQ + E+
Sbjct: 275 GDNKVYLFKESQN-KWQLLNEL 295
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q3ZCC9 | SEC13_BOVIN | No assigned EC number | 0.5073 | 0.4907 | 0.4130 | yes | N/A |
| Q5XFW8 | SEC13_RAT | No assigned EC number | 0.5147 | 0.4907 | 0.4130 | yes | N/A |
| Q9D1M0 | SEC13_MOUSE | No assigned EC number | 0.5147 | 0.4907 | 0.4130 | yes | N/A |
| P55735 | SEC13_HUMAN | No assigned EC number | 0.5147 | 0.4907 | 0.4130 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 271 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-06 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-05 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-04 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 7e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 8e-04 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 0.001 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.003 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTF---DDVVW 193
L H+DWV VA++P +AS SQD + +W D T + T V
Sbjct: 131 LRGHTDWVNSVAFSPD----GTFVASSSQDGTIKLW---DLRTGKC--VATLTGHTGEVN 181
Query: 194 NVSWSLTGDILTVSCGDNSVSLW 216
+V++S G+ L S D ++ LW
Sbjct: 182 SVAFSPDGEKLLSSSSDGTIKLW 204
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 3e-06
Identities = 25/101 (24%), Positives = 42/101 (41%), Gaps = 15/101 (14%)
Query: 125 ICGGDK----WIEETK-----LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSN 175
DK W ET L H+ +V VA++P + ++S S+D+ + +W
Sbjct: 68 SGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRI----LSSSSRDKTIKVWDVE 123
Query: 176 DYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216
T D V +V++S G + S D ++ LW
Sbjct: 124 TGKCLTTL--RGHTDWVNSVAFSPDGTFVASSSQDGTIKLW 162
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.7 bits (104), Expect = 3e-05
Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Query: 123 VRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW-TSNDYVTWT 181
+++ + L H+D V +A++P +IAS S D + +W S + +
Sbjct: 180 IKLWDLRTGKPLSTLAGHTDPVSSLAFSPD---GGLLIASGSSDGTIRLWDLSTGKLLRS 236
Query: 182 PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222
++ V S+S G +L D ++ LW +
Sbjct: 237 TLSGHSDSVV---SSFSPDGSLLASGSSDGTIRLWDLRSSS 274
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 5e-05
Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 8/88 (9%)
Query: 134 ETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW-TSNDYVTWTPFIMNTFDDVV 192
L+ H+ VRDVA + +AS S D+ + +W T + V
Sbjct: 44 LRTLKGHTGPVRDVAASA----DGTYLASGSSDKTIRLWDLETGECVRT---LTGHTSYV 96
Query: 193 WNVSWSLTGDILTVSCGDNSVSLWKENT 220
+V++S G IL+ S D ++ +W T
Sbjct: 97 SSVAFSPDGRILSSSSRDKTIKVWDVET 124
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 1e-04
Identities = 23/97 (23%), Positives = 40/97 (41%), Gaps = 15/97 (15%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTF---DDVVW 193
L+ H+ V VA++P L +A+ S D + +W T ++ T V
Sbjct: 5 LKGHTGGVTCVAFSPDGKL----LATGSGDGTIKVWD-----LETGELLRTLKGHTGPVR 55
Query: 194 NVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230
+V+ S G L D ++ LW T +C+ +
Sbjct: 56 DVAASADGTYLASGSSDKTIRLWDLETG---ECVRTL 89
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.2 bits (100), Expect = 1e-04
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 5/93 (5%)
Query: 136 KLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNV 195
L HS V VA++P L +AS S D V +W + + + V ++
Sbjct: 279 TLSGHSSSVLSVAFSPDGKL----LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334
Query: 196 SWSLTGDILTVSCG-DNSVSLWKENTDGAWQCI 227
S+S G +L D ++ LW T + +
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTL 367
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 12/84 (14%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTF---DDVVW 193
L H + V VA++P L +AS S+D + +W D T + T + V
Sbjct: 215 LRGHENGVNSVAFSPDGYL----LASGSEDGTIRVW---DLRTGEC--VQTLSGHTNSVT 265
Query: 194 NVSWSLTGDILTVSCGDNSVSLWK 217
+++WS G L D ++ +W
Sbjct: 266 SLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.9 bits (86), Expect = 4e-04
Identities = 12/38 (31%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
Query: 135 TKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172
L+ H+ V VA++P ++AS S D V +W
Sbjct: 5 RTLKGHTGPVTSVAFSPD----GNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 7e-04
Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 8/108 (7%)
Query: 123 VRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP 182
+++ L H+ V VA++P + S S D + +W D T
Sbjct: 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPD----GEKLLSSSSDGTIKLW---DLSTGKC 211
Query: 183 F-IMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITE 229
+ ++ V +V++S G +L D ++ +W T Q ++
Sbjct: 212 LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG 259
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.1 bits (92), Expect = 8e-04
Identities = 21/93 (22%), Positives = 38/93 (40%), Gaps = 6/93 (6%)
Query: 129 DKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTF 188
LE HS+ V +A++P K + + S D + +W +
Sbjct: 143 TPGKLIRTLEGHSESVTSLAFSPD---GKLLASGSSLDGTIKLWDLRT--GKPLSTLAGH 197
Query: 189 DDVVWNVSWSLTGDILTVSCG-DNSVSLWKENT 220
D V ++++S G +L S D ++ LW +T
Sbjct: 198 TDPVSSLAFSPDGGLLIASGSSDGTIRLWDLST 230
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 35.8 bits (83), Expect = 0.001
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 4/43 (9%)
Query: 130 KWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172
L+ H+ V VA++P +AS S D + +W
Sbjct: 1 SGELLKTLKGHTGPVTSVAFSPD----GKYLASGSDDGTIKLW 39
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 38.1 bits (87), Expect = 0.003
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 6/94 (6%)
Query: 128 GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187
K + L+ H V ++++P +++ S D + +W D T P
Sbjct: 315 TGKLLSSLTLKGHEGPVSSLSFSPD---GSLLVSGGSDDGTIRLW---DLRTGKPLKTLE 368
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221
V +VS+S G +++ D +V LW +T
Sbjct: 369 GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTG 402
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 271 | |||
| KOG0271|consensus | 480 | 99.97 | ||
| KOG0272|consensus | 459 | 99.97 | ||
| KOG0272|consensus | 459 | 99.97 | ||
| KOG0263|consensus | 707 | 99.96 | ||
| KOG0271|consensus | 480 | 99.96 | ||
| KOG0279|consensus | 315 | 99.95 | ||
| KOG0645|consensus | 312 | 99.95 | ||
| KOG0295|consensus | 406 | 99.95 | ||
| KOG0263|consensus | 707 | 99.95 | ||
| KOG0315|consensus | 311 | 99.95 | ||
| KOG0286|consensus | 343 | 99.95 | ||
| KOG0291|consensus | 893 | 99.95 | ||
| KOG0279|consensus | 315 | 99.94 | ||
| KOG0273|consensus | 524 | 99.94 | ||
| KOG0266|consensus | 456 | 99.93 | ||
| KOG0285|consensus | 460 | 99.93 | ||
| KOG0284|consensus | 464 | 99.93 | ||
| KOG0645|consensus | 312 | 99.93 | ||
| KOG0273|consensus | 524 | 99.93 | ||
| KOG0266|consensus | 456 | 99.93 | ||
| KOG0284|consensus | 464 | 99.92 | ||
| KOG0319|consensus | 775 | 99.92 | ||
| KOG0265|consensus | 338 | 99.92 | ||
| KOG1332|consensus | 299 | 99.92 | ||
| KOG0286|consensus | 343 | 99.92 | ||
| KOG0276|consensus | 794 | 99.92 | ||
| KOG0281|consensus | 499 | 99.91 | ||
| KOG0295|consensus | 406 | 99.91 | ||
| KOG0313|consensus | 423 | 99.91 | ||
| KOG0275|consensus | 508 | 99.91 | ||
| KOG0277|consensus | 311 | 99.91 | ||
| KOG0276|consensus | 794 | 99.9 | ||
| KOG0283|consensus | 712 | 99.9 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.9 | |
| KOG2445|consensus | 361 | 99.9 | ||
| KOG0277|consensus | 311 | 99.9 | ||
| KOG0318|consensus | 603 | 99.9 | ||
| KOG0293|consensus | 519 | 99.9 | ||
| KOG0319|consensus | 775 | 99.9 | ||
| KOG0315|consensus | 311 | 99.9 | ||
| KOG0306|consensus | 888 | 99.89 | ||
| KOG0282|consensus | 503 | 99.89 | ||
| KOG0291|consensus | 893 | 99.89 | ||
| KOG0643|consensus | 327 | 99.89 | ||
| KOG0281|consensus | 499 | 99.89 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.89 | |
| KOG1407|consensus | 313 | 99.89 | ||
| KOG0640|consensus | 430 | 99.89 | ||
| KOG0278|consensus | 334 | 99.89 | ||
| KOG0292|consensus | 1202 | 99.89 | ||
| KOG0973|consensus | 942 | 99.88 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.88 | |
| KOG0269|consensus | 839 | 99.88 | ||
| KOG0316|consensus | 307 | 99.88 | ||
| KOG0264|consensus | 422 | 99.88 | ||
| KOG1446|consensus | 311 | 99.88 | ||
| KOG1332|consensus | 299 | 99.87 | ||
| KOG0292|consensus | 1202 | 99.87 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.87 | |
| KOG0318|consensus | 603 | 99.87 | ||
| KOG0306|consensus | 888 | 99.86 | ||
| KOG0310|consensus | 487 | 99.86 | ||
| KOG0282|consensus | 503 | 99.86 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.86 | |
| KOG0316|consensus | 307 | 99.86 | ||
| KOG4283|consensus | 397 | 99.86 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.86 | |
| KOG0296|consensus | 399 | 99.86 | ||
| KOG0265|consensus | 338 | 99.85 | ||
| KOG0308|consensus | 735 | 99.85 | ||
| KOG0296|consensus | 399 | 99.85 | ||
| KOG0289|consensus | 506 | 99.85 | ||
| KOG0285|consensus | 460 | 99.85 | ||
| KOG0274|consensus | 537 | 99.85 | ||
| KOG0313|consensus | 423 | 99.84 | ||
| KOG0973|consensus | 942 | 99.84 | ||
| KOG0305|consensus | 484 | 99.84 | ||
| KOG0302|consensus | 440 | 99.84 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.84 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.83 | |
| KOG0289|consensus | 506 | 99.83 | ||
| KOG0772|consensus | 641 | 99.83 | ||
| KOG0294|consensus | 362 | 99.83 | ||
| KOG0646|consensus | 476 | 99.82 | ||
| KOG0283|consensus | 712 | 99.82 | ||
| KOG0288|consensus | 459 | 99.82 | ||
| KOG0264|consensus | 422 | 99.82 | ||
| KOG0301|consensus | 745 | 99.82 | ||
| KOG0269|consensus | 839 | 99.81 | ||
| KOG0274|consensus | 537 | 99.81 | ||
| KOG0268|consensus | 433 | 99.81 | ||
| KOG0302|consensus | 440 | 99.81 | ||
| KOG0310|consensus | 487 | 99.81 | ||
| KOG0639|consensus | 705 | 99.81 | ||
| KOG0641|consensus | 350 | 99.8 | ||
| KOG0299|consensus | 479 | 99.8 | ||
| KOG0308|consensus | 735 | 99.8 | ||
| KOG0643|consensus | 327 | 99.8 | ||
| KOG0641|consensus | 350 | 99.79 | ||
| KOG0267|consensus | 825 | 99.78 | ||
| KOG0303|consensus | 472 | 99.78 | ||
| KOG0301|consensus | 745 | 99.77 | ||
| KOG1273|consensus | 405 | 99.77 | ||
| KOG0305|consensus | 484 | 99.76 | ||
| KOG0275|consensus | 508 | 99.76 | ||
| KOG0294|consensus | 362 | 99.76 | ||
| KOG0647|consensus | 347 | 99.76 | ||
| KOG0270|consensus | 463 | 99.76 | ||
| KOG1408|consensus | 1080 | 99.76 | ||
| KOG2096|consensus | 420 | 99.75 | ||
| KOG0639|consensus | 705 | 99.75 | ||
| KOG0647|consensus | 347 | 99.74 | ||
| KOG4328|consensus | 498 | 99.74 | ||
| KOG1446|consensus | 311 | 99.74 | ||
| KOG1007|consensus | 370 | 99.74 | ||
| KOG0293|consensus | 519 | 99.73 | ||
| KOG0270|consensus | 463 | 99.73 | ||
| KOG0268|consensus | 433 | 99.73 | ||
| KOG1539|consensus | 910 | 99.73 | ||
| KOG1009|consensus | 434 | 99.72 | ||
| KOG1036|consensus | 323 | 99.72 | ||
| KOG4378|consensus | 673 | 99.72 | ||
| KOG1274|consensus | 933 | 99.71 | ||
| KOG0300|consensus | 481 | 99.71 | ||
| KOG0300|consensus | 481 | 99.71 | ||
| KOG0303|consensus | 472 | 99.71 | ||
| KOG2919|consensus | 406 | 99.7 | ||
| KOG0267|consensus | 825 | 99.7 | ||
| KOG1407|consensus | 313 | 99.7 | ||
| KOG1408|consensus | 1080 | 99.7 | ||
| KOG0771|consensus | 398 | 99.7 | ||
| KOG1063|consensus | 764 | 99.69 | ||
| KOG0278|consensus | 334 | 99.69 | ||
| KOG1445|consensus | 1012 | 99.69 | ||
| KOG1445|consensus | 1012 | 99.68 | ||
| KOG0288|consensus | 459 | 99.67 | ||
| KOG2096|consensus | 420 | 99.67 | ||
| KOG0299|consensus | 479 | 99.66 | ||
| KOG0646|consensus | 476 | 99.66 | ||
| KOG0640|consensus | 430 | 99.66 | ||
| KOG0772|consensus | 641 | 99.65 | ||
| KOG0290|consensus | 364 | 99.64 | ||
| KOG2055|consensus | 514 | 99.64 | ||
| KOG1034|consensus | 385 | 99.63 | ||
| KOG1034|consensus | 385 | 99.63 | ||
| KOG0307|consensus | 1049 | 99.63 | ||
| KOG1188|consensus | 376 | 99.63 | ||
| KOG1274|consensus | 933 | 99.62 | ||
| KOG1007|consensus | 370 | 99.61 | ||
| KOG1036|consensus | 323 | 99.61 | ||
| KOG0321|consensus | 720 | 99.61 | ||
| KOG0642|consensus | 577 | 99.6 | ||
| KOG2048|consensus | 691 | 99.6 | ||
| KOG1063|consensus | 764 | 99.6 | ||
| KOG2919|consensus | 406 | 99.59 | ||
| KOG1524|consensus | 737 | 99.59 | ||
| KOG2106|consensus | 626 | 99.58 | ||
| KOG0321|consensus | 720 | 99.58 | ||
| KOG1009|consensus | 434 | 99.57 | ||
| KOG1538|consensus | 1081 | 99.57 | ||
| KOG1523|consensus | 361 | 99.57 | ||
| KOG2445|consensus | 361 | 99.57 | ||
| KOG0322|consensus | 323 | 99.56 | ||
| KOG4283|consensus | 397 | 99.56 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.55 | |
| KOG2106|consensus | 626 | 99.55 | ||
| KOG2055|consensus | 514 | 99.55 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.55 | |
| KOG0307|consensus | 1049 | 99.54 | ||
| KOG0649|consensus | 325 | 99.54 | ||
| KOG2111|consensus | 346 | 99.51 | ||
| KOG2394|consensus | 636 | 99.51 | ||
| KOG2110|consensus | 391 | 99.48 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.48 | |
| KOG1538|consensus | 1081 | 99.45 | ||
| KOG2048|consensus | 691 | 99.45 | ||
| KOG2394|consensus | 636 | 99.44 | ||
| KOG0642|consensus | 577 | 99.43 | ||
| KOG1524|consensus | 737 | 99.43 | ||
| KOG0290|consensus | 364 | 99.4 | ||
| KOG0644|consensus | 1113 | 99.39 | ||
| KOG1587|consensus | 555 | 99.39 | ||
| KOG1310|consensus | 758 | 99.38 | ||
| KOG4378|consensus | 673 | 99.37 | ||
| KOG0649|consensus | 325 | 99.37 | ||
| KOG0650|consensus | 733 | 99.36 | ||
| KOG1272|consensus | 545 | 99.36 | ||
| KOG1273|consensus | 405 | 99.34 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.34 | |
| KOG0650|consensus | 733 | 99.34 | ||
| KOG1310|consensus | 758 | 99.32 | ||
| KOG1517|consensus | 1387 | 99.32 | ||
| KOG0644|consensus | 1113 | 99.32 | ||
| KOG4328|consensus | 498 | 99.32 | ||
| KOG1587|consensus | 555 | 99.32 | ||
| KOG1188|consensus | 376 | 99.3 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.29 | |
| KOG0974|consensus | 967 | 99.29 | ||
| KOG4227|consensus | 609 | 99.29 | ||
| KOG1240|consensus | 1431 | 99.28 | ||
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.27 | |
| KOG1539|consensus | 910 | 99.24 | ||
| KOG1523|consensus | 361 | 99.23 | ||
| KOG3881|consensus | 412 | 99.23 | ||
| KOG1963|consensus | 792 | 99.22 | ||
| KOG1517|consensus | 1387 | 99.19 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.19 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.17 | |
| KOG1963|consensus | 792 | 99.16 | ||
| KOG0280|consensus | 339 | 99.15 | ||
| KOG0280|consensus | 339 | 99.14 | ||
| KOG0771|consensus | 398 | 99.13 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.11 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.11 | |
| KOG0974|consensus | 967 | 99.09 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.09 | |
| KOG1409|consensus | 404 | 99.08 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.07 | |
| KOG1272|consensus | 545 | 99.07 | ||
| KOG4227|consensus | 609 | 99.05 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.04 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.04 | |
| KOG2321|consensus | 703 | 99.03 | ||
| KOG2110|consensus | 391 | 99.03 | ||
| KOG2139|consensus | 445 | 99.03 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.99 | |
| KOG2111|consensus | 346 | 98.99 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.99 | |
| KOG0322|consensus | 323 | 98.98 | ||
| KOG3914|consensus | 390 | 98.95 | ||
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.95 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.93 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.93 | |
| KOG1240|consensus | 1431 | 98.93 | ||
| KOG1064|consensus | 2439 | 98.93 | ||
| KOG2139|consensus | 445 | 98.92 | ||
| KOG4714|consensus | 319 | 98.92 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.91 | |
| KOG4497|consensus | 447 | 98.9 | ||
| KOG4547|consensus | 541 | 98.87 | ||
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.85 | |
| KOG1334|consensus | 559 | 98.85 | ||
| KOG1409|consensus | 404 | 98.84 | ||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.82 | |
| KOG1334|consensus | 559 | 98.77 | ||
| KOG2321|consensus | 703 | 98.76 | ||
| KOG4547|consensus | 541 | 98.72 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.71 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.7 | |
| KOG2695|consensus | 425 | 98.68 | ||
| KOG4532|consensus | 344 | 98.66 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.64 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.63 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.62 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.62 | |
| KOG4497|consensus | 447 | 98.6 | ||
| KOG1354|consensus | 433 | 98.57 | ||
| KOG4190|consensus | 1034 | 98.57 | ||
| KOG3881|consensus | 412 | 98.54 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.54 | |
| KOG1354|consensus | 433 | 98.52 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.52 | |
| KOG0882|consensus | 558 | 98.52 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.49 | |
| KOG3914|consensus | 390 | 98.48 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.47 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 98.44 | |
| KOG1275|consensus | 1118 | 98.43 | ||
| KOG0309|consensus | 1081 | 98.42 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.41 | |
| KOG4714|consensus | 319 | 98.4 | ||
| KOG2041|consensus | 1189 | 98.39 | ||
| KOG0309|consensus | 1081 | 98.34 | ||
| KOG2315|consensus | 566 | 98.32 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.3 | |
| KOG2066|consensus | 846 | 98.26 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.23 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.19 | |
| KOG1064|consensus | 2439 | 98.19 | ||
| KOG2041|consensus | 1189 | 98.16 | ||
| KOG4190|consensus | 1034 | 98.16 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.15 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.14 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.09 | |
| KOG2066|consensus | 846 | 98.08 | ||
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.08 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.03 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 97.97 | |
| KOG2315|consensus | 566 | 97.94 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.84 | |
| KOG2314|consensus | 698 | 97.83 | ||
| KOG4532|consensus | 344 | 97.82 | ||
| KOG1645|consensus | 463 | 97.81 | ||
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.8 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.79 | |
| KOG2695|consensus | 425 | 97.78 | ||
| KOG4640|consensus | 665 | 97.75 | ||
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 97.72 | |
| KOG1912|consensus | 1062 | 97.67 | ||
| KOG2114|consensus | 933 | 97.6 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 97.59 | |
| KOG1645|consensus | 463 | 97.58 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 97.56 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.54 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 97.49 | |
| KOG3621|consensus | 726 | 97.45 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.32 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 97.28 | |
| KOG2314|consensus | 698 | 97.23 | ||
| KOG1920|consensus | 1265 | 97.17 | ||
| KOG4640|consensus | 665 | 97.17 | ||
| KOG3617|consensus | 1416 | 97.14 | ||
| KOG1920|consensus | 1265 | 97.14 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 97.06 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 97.04 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.04 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.02 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.01 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.97 | |
| KOG1912|consensus | 1062 | 96.96 | ||
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.95 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.9 | |
| KOG1008|consensus | 783 | 96.85 | ||
| KOG0882|consensus | 558 | 96.79 | ||
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.74 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.68 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.67 | |
| KOG1275|consensus | 1118 | 96.46 | ||
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 96.46 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 96.45 | |
| KOG1832|consensus | 1516 | 96.41 | ||
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.31 | |
| KOG2114|consensus | 933 | 96.22 | ||
| KOG1008|consensus | 783 | 96.2 | ||
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 96.14 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 96.12 | |
| KOG2444|consensus | 238 | 96.12 | ||
| KOG2395|consensus | 644 | 96.04 | ||
| KOG3621|consensus | 726 | 95.89 | ||
| KOG2444|consensus | 238 | 95.86 | ||
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 95.81 | |
| KOG1832|consensus | 1516 | 95.76 | ||
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 95.68 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 95.57 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 95.57 | |
| KOG4649|consensus | 354 | 95.5 | ||
| PHA02713 | 557 | hypothetical protein; Provisional | 95.48 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.23 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 95.04 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.89 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 94.84 | |
| KOG2079|consensus | 1206 | 94.74 | ||
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 94.66 | |
| KOG3617|consensus | 1416 | 94.63 | ||
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 94.54 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 94.23 | |
| KOG2079|consensus | 1206 | 94.16 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 93.81 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 93.65 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 93.22 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 93.09 | |
| KOG3630|consensus | 1405 | 92.97 | ||
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 92.91 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 92.82 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 92.78 | |
| KOG2395|consensus | 644 | 92.46 | ||
| KOG4441|consensus | 571 | 92.34 | ||
| KOG4441|consensus | 571 | 92.19 | ||
| PHA03098 | 534 | kelch-like protein; Provisional | 92.16 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 91.84 | |
| PF11715 | 547 | Nup160: Nucleoporin Nup120/160; InterPro: IPR02171 | 91.52 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 91.48 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 91.32 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 90.91 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 90.49 | |
| KOG4649|consensus | 354 | 90.2 | ||
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 89.35 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 88.99 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 88.72 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 88.34 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 88.27 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 87.61 | |
| KOG3630|consensus | 1405 | 87.6 | ||
| PHA03098 | 534 | kelch-like protein; Provisional | 87.46 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 87.04 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 86.9 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 86.75 | |
| KOG1897|consensus | 1096 | 86.7 | ||
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 86.62 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 86.19 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 86.13 | |
| KOG1916|consensus | 1283 | 85.09 | ||
| PHA02790 | 480 | Kelch-like protein; Provisional | 84.91 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 84.72 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 84.59 | |
| KOG1916|consensus | 1283 | 84.39 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 84.05 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 83.56 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 83.28 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 83.27 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 83.11 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 82.91 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 82.62 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 81.87 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 81.22 |
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=204.49 Aligned_cols=202 Identities=19% Similarity=0.190 Sum_probs=159.4
Q ss_pred cceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCC
Q psy13856 23 EIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 23 ~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
+-.+.+....|+|..|++|+.|.++|+||+ +.+.++|..+ |.+++|+|||+.||+|+.||+|++||- +
T Consensus 115 ~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~W----VlcvawsPDgk~iASG~~dg~I~lwdp---k 187 (480)
T KOG0271|consen 115 GEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNW----VLCVAWSPDGKKIASGSKDGSIRLWDP---K 187 (480)
T ss_pred CCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccE----EEEEEECCCcchhhccccCCeEEEecC---C
Confidence 334455666679999999999999999999 7889999999 999999999999999999999999997 6
Q ss_pred CCceeecc--ceeeEEEe---------eccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEE
Q psy13856 98 SPACLQPK--YFKLTVYS---------TKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIA 161 (271)
Q Consensus 98 ~~~~~~~~--~~~~~~~~---------~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~ 161 (271)
+++++-.. .+...+.+ ...++++ +.++|++...-.++..+.+|+.+|+|++|-- ..+|+
T Consensus 188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG-----~gliy 262 (480)
T KOG0271|consen 188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG-----EGLIY 262 (480)
T ss_pred CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC-----CceEE
Confidence 66555322 23222222 1255676 8899933222278899999999999999974 47999
Q ss_pred EEeCCCeEEEEEcCCCce--------------------------------------------------------------
Q psy13856 162 SCSQDRKVIIWTSNDYVT-------------------------------------------------------------- 179 (271)
Q Consensus 162 s~~~dg~i~iwd~~~~~~-------------------------------------------------------------- 179 (271)
+|+.|++|++|+...+.+
T Consensus 263 SgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSg 342 (480)
T KOG0271|consen 263 SGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSG 342 (480)
T ss_pred ecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEe
Confidence 999999999999865210
Q ss_pred --------e-------eeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhhhh
Q psy13856 180 --------W-------TPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRAI 239 (271)
Q Consensus 180 --------~-------~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 239 (271)
| ++..+.+|...|+.+.|+||++++|++|.|..|++|+-+++ +.+.++.+|-..+-+
T Consensus 343 sDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---k~lasfRGHv~~VYq 414 (480)
T KOG0271|consen 343 SDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---KFLASFRGHVAAVYQ 414 (480)
T ss_pred cCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---chhhhhhhccceeEE
Confidence 1 12245688899999999999999999999999999999988 666777776655443
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-30 Score=207.71 Aligned_cols=218 Identities=17% Similarity=0.230 Sum_probs=175.4
Q ss_pred ceeEEeeceeEeecc-ccccceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCe
Q psy13856 5 EWLLVSCDGLLMTLK-PTLEIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNR 78 (271)
Q Consensus 5 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~ 78 (271)
-|-+.+| -.+.+++ ++.++......|.-++..||||+.||++++|++ +..+.+|... |..++|+|+|++
T Consensus 201 vW~~~~~-~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~R----Vs~VafHPsG~~ 275 (459)
T KOG0272|consen 201 VWSVPQC-NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLAR----VSRVAFHPSGKF 275 (459)
T ss_pred EeecCCc-ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhh----heeeeecCCCce
Confidence 3444455 3444444 233444555555545778999999999999999 7889999999 999999999999
Q ss_pred EEEEeCCCcEEEEEeecCCCCceeecc-c----eeeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEE
Q psy13856 79 SATSSFHEAAKHLGTVQSSSPACLQPK-Y----FKLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVA 148 (271)
Q Consensus 79 l~s~s~d~~i~~~d~~~~~~~~~~~~~-~----~~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~ 148 (271)
|+|++.|.+-++||+ +++..+-.. + .-...|.++|..++ ..-+|++.++-.++..+.+|..+|.+|.
T Consensus 276 L~TasfD~tWRlWD~---~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~ 352 (459)
T KOG0272|consen 276 LGTASFDSTWRLWDL---ETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVA 352 (459)
T ss_pred eeecccccchhhccc---ccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEe
Confidence 999999999999999 555444322 2 34566667787777 3334433333378999999999999999
Q ss_pred EccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEec-CCCEEEEEECCCcEEEEEeCCCCceeEE
Q psy13856 149 WAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSL-TGDILTVSCGDNSVSLWKENTDGAWQCI 227 (271)
Q Consensus 149 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~v~iw~~~~~~~~~~~ 227 (271)
|+|+ |..+||||.|++++|||++...+ ...+.+|.+-|..|.|+| .|.+|++++.|++++||.-. .|.++
T Consensus 353 fsPN----Gy~lATgs~Dnt~kVWDLR~r~~--ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~---~~~~~ 423 (459)
T KOG0272|consen 353 FSPN----GYHLATGSSDNTCKVWDLRMRSE--LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTR---TWSPL 423 (459)
T ss_pred ECCC----ceEEeecCCCCcEEEeeeccccc--ceecccccchhhheEecccCCeEEEEcccCcceeeecCC---Ccccc
Confidence 9995 99999999999999999999887 889999999999999999 68999999999999999754 56999
Q ss_pred EEecccchhhhh
Q psy13856 228 TEMGKTSEQRAI 239 (271)
Q Consensus 228 ~~~~~~~~~~~~ 239 (271)
+.+.+|++.+..
T Consensus 424 ksLaGHe~kV~s 435 (459)
T KOG0272|consen 424 KSLAGHEGKVIS 435 (459)
T ss_pred hhhcCCccceEE
Confidence 999999887654
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=201.15 Aligned_cols=196 Identities=17% Similarity=0.107 Sum_probs=167.2
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCC--CCeEEEEeCCCcEEEEEeecCCCC
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPK--LNRSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
..++..+|+..|+|||.+|.+++|+. +.++.+|... +.++.|+|. +..++||+.||++++|+. ...
T Consensus 179 s~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~----v~~~~fhP~~~~~~lat~s~Dgtvklw~~---~~e 251 (459)
T KOG0272|consen 179 SGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSR----VGAAVFHPVDSDLNLATASADGTVKLWKL---SQE 251 (459)
T ss_pred eeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccc----eeeEEEccCCCccceeeeccCCceeeecc---CCC
Confidence 34445579999999999999999998 8899999999 999999996 568999999999999998 444
Q ss_pred ceeecc-ce----eeEEEeeccceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCC
Q psy13856 100 ACLQPK-YF----KLTVYSTKLTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDR 167 (271)
Q Consensus 100 ~~~~~~-~~----~~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg 167 (271)
..+..+ ++ ....|.++|++|. .+.++ ..++ ..+...+||...|.+++|.| ||.+++||+.|.
T Consensus 252 ~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk--~ElL~QEGHs~~v~~iaf~~----DGSL~~tGGlD~ 325 (459)
T KOG0272|consen 252 TPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK--SELLLQEGHSKGVFSIAFQP----DGSLAATGGLDS 325 (459)
T ss_pred cchhhhhcchhhheeeeecCCCceeeecccccchhhcccccc--hhhHhhcccccccceeEecC----CCceeeccCccc
Confidence 444443 22 5566778888888 55666 2333 45556689999999999999 899999999999
Q ss_pred eEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhhhhh
Q psy13856 168 KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRAIK 240 (271)
Q Consensus 168 ~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~ 240 (271)
.-+|||++++++ +..+.+|..+|.+|+|+|+|..||+||.|++++|||++.. .+++.+..|..-+.+.
T Consensus 326 ~~RvWDlRtgr~--im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~V 393 (459)
T KOG0272|consen 326 LGRVWDLRTGRC--IMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQV 393 (459)
T ss_pred hhheeecccCcE--EEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhhe
Confidence 999999999998 8889999999999999999999999999999999999976 6688888888777663
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=209.54 Aligned_cols=185 Identities=19% Similarity=0.225 Sum_probs=163.2
Q ss_pred cccceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeec
Q psy13856 21 TLEIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQ 95 (271)
Q Consensus 21 ~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~ 95 (271)
.+.-.+|.++..|+.++|++||.|+++|+|.+ +-.+++|..+ |+++.|+|.|.++||||.|++.++|..
T Consensus 449 GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~P----VwdV~F~P~GyYFatas~D~tArLWs~-- 522 (707)
T KOG0263|consen 449 GHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAP----VWDVQFAPRGYYFATASHDQTARLWST-- 522 (707)
T ss_pred cCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcc----eeeEEecCCceEEEecCCCceeeeeec--
Confidence 44567899999999999999999999999999 6677899999 999999999999999999999999998
Q ss_pred CCCCceeecc-----ceeeEEEeeccceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEE
Q psy13856 96 SSSPACLQPK-----YFKLTVYSTKLTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASC 163 (271)
Q Consensus 96 ~~~~~~~~~~-----~~~~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~ 163 (271)
.....++.+ ......+.+...+++ .+|++ ..++ ..++.|.||.++|.+++|+| .|.+|++|
T Consensus 523 -d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G--~~VRiF~GH~~~V~al~~Sp----~Gr~LaSg 595 (707)
T KOG0263|consen 523 -DHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTG--NSVRIFTGHKGPVTALAFSP----CGRYLASG 595 (707)
T ss_pred -ccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCC--cEEEEecCCCCceEEEEEcC----CCceEeec
Confidence 334444444 224566667777887 88888 4455 78999999999999999999 69999999
Q ss_pred eCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 164 SQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 164 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
+.||.|++||+.++.. +..+.+|++.|+++.|+.+|.+||+|+.|++|++||+..
T Consensus 596 ~ed~~I~iWDl~~~~~--v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 596 DEDGLIKIWDLANGSL--VKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred ccCCcEEEEEcCCCcc--hhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9999999999999887 788999999999999999999999999999999999874
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-29 Score=195.52 Aligned_cols=198 Identities=18% Similarity=0.213 Sum_probs=156.2
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc------eeeeccccccccccceEEEEcC-----CCCeEEEEeCCCcEEEEEee
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSP-----KLNRSATSSFHEAAKHLGTV 94 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~-----~~~~l~s~s~d~~i~~~d~~ 94 (271)
+.+.+..|||..||+|+.||.|++||. ...+.+|..+ |.+++|.| ..++|++++.||.+++||+
T Consensus 160 VlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~----It~Lawep~hl~p~~r~las~skDg~vrIWd~- 234 (480)
T KOG0271|consen 160 VLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKW----ITALAWEPLHLVPPCRRLASSSKDGSVRIWDT- 234 (480)
T ss_pred EEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccc----eeEEeecccccCCCccceecccCCCCEEEEEc-
Confidence 456667789999999999999999997 7789999999 99999976 5679999999999999998
Q ss_pred cCCCCceeecc-ceeeEEEeec--cce-----------------------------------------------------
Q psy13856 95 QSSSPACLQPK-YFKLTVYSTK--LTR----------------------------------------------------- 118 (271)
Q Consensus 95 ~~~~~~~~~~~-~~~~~~~~~~--~~~----------------------------------------------------- 118 (271)
..+.|+... +++..+.+.. |.-
T Consensus 235 --~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~ 312 (480)
T KOG0271|consen 235 --KLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGR 312 (480)
T ss_pred --cCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccc
Confidence 555555433 2222111111 000
Q ss_pred --------------------------ee-----eEEEEee-CCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCC
Q psy13856 119 --------------------------IL-----ILVRICG-GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQD 166 (271)
Q Consensus 119 --------------------------l~-----~~v~i~~-~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d 166 (271)
++ .++.+++ ...-+++..+.+|..-|+.+.|+| |+.++|+++-|
T Consensus 313 ~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP----d~r~IASaSFD 388 (480)
T KOG0271|consen 313 KPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP----DGRYIASASFD 388 (480)
T ss_pred cCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC----CccEEEEeecc
Confidence 11 2222211 111134556678999999999999 79999999999
Q ss_pred CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhhhh
Q psy13856 167 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRAI 239 (271)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 239 (271)
..|++||.++++. +..+.+|-++|+.++|+.|.++|++||.|.++++|++++. +....+.+|..++.+
T Consensus 389 kSVkLW~g~tGk~--lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tk---Kl~~DLpGh~DEVf~ 456 (480)
T KOG0271|consen 389 KSVKLWDGRTGKF--LASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTK---KLKQDLPGHADEVFA 456 (480)
T ss_pred cceeeeeCCCcch--hhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeee---eecccCCCCCceEEE
Confidence 9999999999987 8889999999999999999999999999999999999987 667778888877665
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=174.07 Aligned_cols=183 Identities=17% Similarity=0.221 Sum_probs=150.6
Q ss_pred CCCEEEEccCCCeEEeccc----------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceee
Q psy13856 34 IGHTLISCDTQAHIGIRST----------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQ 103 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~----------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~ 103 (271)
+.+.+++++.|.++.+|++ .+.+.+|... |..++.++||++.++++.|+++++||+ .+++..+
T Consensus 27 ~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~----v~dv~~s~dg~~alS~swD~~lrlWDl---~~g~~t~ 99 (315)
T KOG0279|consen 27 NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHF----VSDVVLSSDGNFALSASWDGTLRLWDL---ATGESTR 99 (315)
T ss_pred CCceEEEcccceEEEEEEeccCccccCceeeeeeccceE----ecceEEccCCceEEeccccceEEEEEe---cCCcEEE
Confidence 5678999999999999998 6788999999 999999999999999999999999999 7766655
Q ss_pred cc-ce----eeEEEeeccceee-----eEEEE-eeCCceEEeEEecC--CCcceEEEEEccCCCCCCcEEEEEeCCCeEE
Q psy13856 104 PK-YF----KLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLEN--HSDWVRDVAWAPSWGLSKCMIASCSQDRKVI 170 (271)
Q Consensus 104 ~~-~~----~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~ 170 (271)
.+ .+ ....++.+.+.++ +++++ ..-+ .+..++.. |.++|.+++|+|+. +..+|++++.|++++
T Consensus 100 ~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g--~ck~t~~~~~~~~WVscvrfsP~~--~~p~Ivs~s~DktvK 175 (315)
T KOG0279|consen 100 RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG--VCKYTIHEDSHREWVSCVRFSPNE--SNPIIVSASWDKTVK 175 (315)
T ss_pred EEEecCCceEEEEecCCCceeecCCCcceeeeeeecc--cEEEEEecCCCcCcEEEEEEcCCC--CCcEEEEccCCceEE
Confidence 54 33 3344555566666 77888 3334 33333333 37899999999962 377999999999999
Q ss_pred EEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 171 IWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 171 iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
+||+++.+. ...+.+|.+.++.++++|||..+++|+.||.+.+||++.+ ++++.++.
T Consensus 176 vWnl~~~~l--~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~a 232 (315)
T KOG0279|consen 176 VWNLRNCQL--RTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLEA 232 (315)
T ss_pred EEccCCcch--hhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEeccC
Confidence 999999775 6678899999999999999999999999999999999977 44555544
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=174.75 Aligned_cols=170 Identities=24% Similarity=0.396 Sum_probs=147.6
Q ss_pred ecccCCCCC-CCEEEEccCCCeEEeccce--------ee-eccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeec
Q psy13856 26 TYTESPLRI-GHTLISCDTQAHIGIRSTI--------SL-LQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQ 95 (271)
Q Consensus 26 ~~~~~~~~~-g~~l~s~s~d~~i~lwd~~--------~~-~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~ 95 (271)
.......|. |..||||+.|+.||+|+.. .. -.+|+.. |++++|+|.|++|++||.|.++-+|..
T Consensus 17 ~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrs----VRsvAwsp~g~~La~aSFD~t~~Iw~k-- 90 (312)
T KOG0645|consen 17 VWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRS----VRSVAWSPHGRYLASASFDATVVIWKK-- 90 (312)
T ss_pred EEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchhe----eeeeeecCCCcEEEEeeccceEEEeec--
Confidence 333333444 8899999999999999981 11 1478888 999999999999999999999988886
Q ss_pred CCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcC
Q psy13856 96 SSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSN 175 (271)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 175 (271)
.++.|+++..++||+..|-+++|++ +|++||+|+.|+.|-||...
T Consensus 91 -------------------------------~~~efecv~~lEGHEnEVK~Vaws~----sG~~LATCSRDKSVWiWe~d 135 (312)
T KOG0645|consen 91 -------------------------------EDGEFECVATLEGHENEVKCVAWSA----SGNYLATCSRDKSVWIWEID 135 (312)
T ss_pred -------------------------------CCCceeEEeeeeccccceeEEEEcC----CCCEEEEeeCCCeEEEEEec
Confidence 4567799999999999999999999 79999999999999999998
Q ss_pred CCcee-eeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchh
Q psy13856 176 DYVTW-TPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 176 ~~~~~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
.+..+ ....+++|.+.|..+.|+|...+|+++|.|++|++|+-..+..|.+..++.+|+..
T Consensus 136 eddEfec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~T 197 (312)
T KOG0645|consen 136 EDDEFECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENT 197 (312)
T ss_pred CCCcEEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccce
Confidence 55433 25678999999999999999999999999999999998878899999999999753
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-27 Score=182.24 Aligned_cols=199 Identities=18% Similarity=0.222 Sum_probs=167.9
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
.++..+....|.++++|+.|-.+.+||+ ++.+.+|... |.++.|-|.|.++++++.|.+|+.|+. .+
T Consensus 152 sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~----vS~V~f~P~gd~ilS~srD~tik~We~---~t 224 (406)
T KOG0295|consen 152 SVFDISFDASGKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHG----VSSVFFLPLGDHILSCSRDNTIKAWEC---DT 224 (406)
T ss_pred ceeEEEEecCccEEEecCCccchhheeHHHHHHHHHHhcCcccc----eeeEEEEecCCeeeecccccceeEEec---cc
Confidence 3566666678999999999999999999 7788899999 999999999999999999999999999 89
Q ss_pred Cceeecc-ceeeE----EEeeccceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCC-----------CC
Q psy13856 99 PACLQPK-YFKLT----VYSTKLTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSW-----------GL 155 (271)
Q Consensus 99 ~~~~~~~-~~~~~----~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~-----------~~ 155 (271)
+-|+.++ .++.. ....++..++ ..+++ ..++ .+...+++|+.+|.+++|.|.. ..
T Consensus 225 g~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~--~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~ 302 (406)
T KOG0295|consen 225 GYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATK--QCKAELREHEHPVECIAWAPESSYPSISEATGSTN 302 (406)
T ss_pred ceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccc--hhhhhhhccccceEEEEecccccCcchhhccCCCC
Confidence 9998877 33322 2233466676 67777 3444 6788899999999999998752 11
Q ss_pred CCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccch
Q psy13856 156 SKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSE 235 (271)
Q Consensus 156 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 235 (271)
.+.++.+++.|++|++||+.++.+ +..+.+|.+.|..++|+|.|+||+++.+|+++++||++.. .|...+..|..
T Consensus 303 ~~~~l~s~SrDktIk~wdv~tg~c--L~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~h 377 (406)
T KOG0295|consen 303 GGQVLGSGSRDKTIKIWDVSTGMC--LFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEH 377 (406)
T ss_pred CccEEEeecccceEEEEeccCCeE--EEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCcc
Confidence 346999999999999999999988 8899999999999999999999999999999999999987 77777776654
Q ss_pred hh
Q psy13856 236 QR 237 (271)
Q Consensus 236 ~~ 237 (271)
-.
T Consensus 378 fv 379 (406)
T KOG0295|consen 378 FV 379 (406)
T ss_pred ee
Confidence 43
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.8e-27 Score=200.22 Aligned_cols=202 Identities=15% Similarity=0.118 Sum_probs=165.3
Q ss_pred eeccccccceecccCCCCCCCEEEEccCCCeEEeccc------------------------------------eeeeccc
Q psy13856 16 MTLKPTLEIETYTESPLRIGHTLISCDTQAHIGIRST------------------------------------ISLLQGS 59 (271)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~------------------------------------~~~~~~h 59 (271)
.|...+.+..... ....|+..||.|-.|..|++|.+ .+.+.+|
T Consensus 372 YT~~nt~~~v~ca-~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 372 YTFHNTYQGVTCA-EFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EEEEEcCCcceeE-eecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 3444443333322 23457889999999999999987 4557899
Q ss_pred cccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-cee----eEEEeeccceee-----eEEEEeeCC
Q psy13856 60 VYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-YFK----LTVYSTKLTRIL-----ILVRICGGD 129 (271)
Q Consensus 60 ~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~~~----~~~~~~~~~~l~-----~~v~i~~~~ 129 (271)
.++ |+.+.|+|+.++|+++|.|+++|+|.+ .+..++-.. ++. ...|++.|-+|+ ++.+++...
T Consensus 451 ~GP----Vyg~sFsPd~rfLlScSED~svRLWsl---~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d 523 (707)
T KOG0263|consen 451 SGP----VYGCSFSPDRRFLLSCSEDSSVRLWSL---DTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTD 523 (707)
T ss_pred CCc----eeeeeecccccceeeccCCcceeeeec---ccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecc
Confidence 999 999999999999999999999999999 666666544 332 244566688888 777774433
Q ss_pred ceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEEC
Q psy13856 130 KWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG 209 (271)
Q Consensus 130 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 209 (271)
...+.+.+.+|-+.|.|+.|+|+ .+|+++||.|.+|++||..++.. +..+.+|.++|.+++|+|+|++|++|+.
T Consensus 524 ~~~PlRifaghlsDV~cv~FHPN----s~Y~aTGSsD~tVRlWDv~~G~~--VRiF~GH~~~V~al~~Sp~Gr~LaSg~e 597 (707)
T KOG0263|consen 524 HNKPLRIFAGHLSDVDCVSFHPN----SNYVATGSSDRTVRLWDVSTGNS--VRIFTGHKGPVTALAFSPCGRYLASGDE 597 (707)
T ss_pred cCCchhhhcccccccceEEECCc----ccccccCCCCceEEEEEcCCCcE--EEEecCCCCceEEEEEcCCCceEeeccc
Confidence 34789999999999999999994 99999999999999999999987 8899999999999999999999999999
Q ss_pred CCcEEEEEeCCCCceeEEEEecccc
Q psy13856 210 DNSVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 210 D~~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
|+.|++||+.++ ..+..+.+|.
T Consensus 598 d~~I~iWDl~~~---~~v~~l~~Ht 619 (707)
T KOG0263|consen 598 DGLIKIWDLANG---SLVKQLKGHT 619 (707)
T ss_pred CCcEEEEEcCCC---cchhhhhccc
Confidence 999999999887 5555565553
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-26 Score=169.98 Aligned_cols=190 Identities=13% Similarity=0.219 Sum_probs=153.5
Q ss_pred CCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc--
Q psy13856 32 LRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-- 105 (271)
Q Consensus 32 ~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-- 105 (271)
-.+|+.+.+||+||++||||+ .+....|..+ |+++..+|+...|++|.++|.|++||+ ....|....
T Consensus 92 ~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~sp----Vn~vvlhpnQteLis~dqsg~irvWDl---~~~~c~~~liP 164 (311)
T KOG0315|consen 92 QCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSP----VNTVVLHPNQTELISGDQSGNIRVWDL---GENSCTHELIP 164 (311)
T ss_pred eecCeEEEecCCCceEEEEeccCcccchhccCCCC----cceEEecCCcceEEeecCCCcEEEEEc---cCCccccccCC
Confidence 358999999999999999999 4555667778 999999999999999999999999999 444333222
Q ss_pred ----ceeeEEEeeccceee-----eEEEE------eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEE
Q psy13856 106 ----YFKLTVYSTKLTRIL-----ILVRI------CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVI 170 (271)
Q Consensus 106 ----~~~~~~~~~~~~~l~-----~~v~i------~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~ 170 (271)
.........++..++ |...+ .....+.++..++.|.+.+..+.++| |+.+|+++|.|.+++
T Consensus 165 e~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP----d~k~lat~ssdktv~ 240 (311)
T KOG0315|consen 165 EDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP----DVKYLATCSSDKTVK 240 (311)
T ss_pred CCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC----CCcEEEeecCCceEE
Confidence 223333444566666 55555 12224577888999999999999999 799999999999999
Q ss_pred EEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchh
Q psy13856 171 IWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 171 iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
||+.++.-. ....+.+|...++..+|+.||.||++|+.|+.+++|++..+ +.+....+|.+.
T Consensus 241 iwn~~~~~k-le~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~---k~v~qy~gh~K~ 302 (311)
T KOG0315|consen 241 IWNTDDFFK-LELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG---KEVRQYQGHHKA 302 (311)
T ss_pred EEecCCcee-eEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccC---ceeeecCCcccc
Confidence 999988621 14578899999999999999999999999999999999988 777777777654
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=170.82 Aligned_cols=194 Identities=11% Similarity=0.100 Sum_probs=157.3
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCC-
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSS- 97 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~- 97 (271)
-.+|.....+|.++|+++|.||.+.|||. .+.+.-...+ |..++|+|.|+++|+|+.|+...+|++...+
T Consensus 56 ~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~W----VMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~ 131 (343)
T KOG0286|consen 56 NKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSW----VMTCAYSPSGNFVACGGLDNKCSIYPLSTRDA 131 (343)
T ss_pred cceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCcee----EEEEEECCCCCeEEecCcCceeEEEecccccc
Confidence 44566666779999999999999999998 5566667788 9999999999999999999999999983111
Q ss_pred CC--ceeecc-ce----eeEEEeeccceee----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe
Q psy13856 98 SP--ACLQPK-YF----KLTVYSTKLTRIL----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 164 (271)
Q Consensus 98 ~~--~~~~~~-~~----~~~~~~~~~~~l~----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~ 164 (271)
.+ +..+.. .+ ..+.+..+...+. .+..+ .+.+ +....|.+|.+.|.++.++|. +++.|++|+
T Consensus 132 ~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g--~~~~~f~GH~gDV~slsl~p~---~~ntFvSg~ 206 (343)
T KOG0286|consen 132 EGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETG--QQTQVFHGHTGDVMSLSLSPS---DGNTFVSGG 206 (343)
T ss_pred cccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccc--eEEEEecCCcccEEEEecCCC---CCCeEEecc
Confidence 11 111112 22 3344444455555 44555 4566 788999999999999999997 799999999
Q ss_pred CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEec
Q psy13856 165 QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
-|+..++||++.+.+ ++.+.+|++.|++|.|.|+|.-+++|++|++.++||++.+ .++..++
T Consensus 207 cD~~aklWD~R~~~c--~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD---~~~a~ys 268 (343)
T KOG0286|consen 207 CDKSAKLWDVRSGQC--VQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRAD---QELAVYS 268 (343)
T ss_pred cccceeeeeccCcce--eEeecccccccceEEEccCCCeeeecCCCceeEEEeecCC---cEEeeec
Confidence 999999999999987 8999999999999999999999999999999999999988 4444444
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-25 Score=190.16 Aligned_cols=216 Identities=13% Similarity=0.125 Sum_probs=166.8
Q ss_pred CcceeEEeece--eEeecccccc----------ceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccc
Q psy13856 3 SKEWLLVSCDG--LLMTLKPTLE----------IETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRE 65 (271)
Q Consensus 3 ~~~~~~~~~~~--~~~~~~~~~~----------~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~ 65 (271)
.++|+.+-|.. .|..+.-..+ ..+-+..-.|||+++|+|+.||.|++||. +.++..|+..
T Consensus 318 tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~--- 394 (893)
T KOG0291|consen 318 TGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSG--- 394 (893)
T ss_pred cCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCc---
Confidence 58899998854 5555431111 12223333479999999999999999999 7889999999
Q ss_pred cceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceee----EEEeec--cceee------eEEEE--eeCCce
Q psy13856 66 SNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKL----TVYSTK--LTRIL------ILVRI--CGGDKW 131 (271)
Q Consensus 66 ~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~----~~~~~~--~~~l~------~~v~i--~~~~~~ 131 (271)
|+++.|+..|+.+++++.||+|+.||+ +..++.+++..|. ...+.+ +..+. -.|.+ ..++
T Consensus 395 -Vt~v~f~~~g~~llssSLDGtVRAwDl---kRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTG-- 468 (893)
T KOG0291|consen 395 -VTAVQFTARGNVLLSSSLDGTVRAWDL---KRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTG-- 468 (893)
T ss_pred -eEEEEEEecCCEEEEeecCCeEEeeee---cccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecC--
Confidence 999999999999999999999999999 6677777663322 222222 55554 34444 5677
Q ss_pred EEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCC
Q psy13856 132 IEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDN 211 (271)
Q Consensus 132 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 211 (271)
+.+..+.||+++|.+++|+| ++..|+++|.|++|++||+-.... ......+...+..++|+|+|.-|+++.-||
T Consensus 469 qllDiLsGHEgPVs~l~f~~----~~~~LaS~SWDkTVRiW~if~s~~--~vEtl~i~sdvl~vsfrPdG~elaVaTldg 542 (893)
T KOG0291|consen 469 QLLDILSGHEGPVSGLSFSP----DGSLLASGSWDKTVRIWDIFSSSG--TVETLEIRSDVLAVSFRPDGKELAVATLDG 542 (893)
T ss_pred eeeehhcCCCCcceeeEEcc----ccCeEEeccccceEEEEEeeccCc--eeeeEeeccceeEEEEcCCCCeEEEEEecc
Confidence 88999999999999999999 699999999999999999976532 222334667899999999999999999999
Q ss_pred cEEEEEeCCCCceeEEEEecccchh
Q psy13856 212 SVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 212 ~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
.|.+||.+.+ .....+++.+..
T Consensus 543 qItf~d~~~~---~q~~~IdgrkD~ 564 (893)
T KOG0291|consen 543 QITFFDIKEA---VQVGSIDGRKDL 564 (893)
T ss_pred eEEEEEhhhc---eeeccccchhhc
Confidence 9999999876 455555554433
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.7e-25 Score=169.61 Aligned_cols=188 Identities=15% Similarity=0.167 Sum_probs=149.2
Q ss_pred cCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceee
Q psy13856 29 ESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQ 103 (271)
Q Consensus 29 ~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~ 103 (271)
....+||++.+++|.|+++|+||+ .+.|.+|... |.+++|++|.+.+++||.|.+|++|++. ....+.
T Consensus 69 v~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~d----Vlsva~s~dn~qivSGSrDkTiklwnt~---g~ck~t 141 (315)
T KOG0279|consen 69 VVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKD----VLSVAFSTDNRQIVSGSRDKTIKLWNTL---GVCKYT 141 (315)
T ss_pred eEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCc----eEEEEecCCCceeecCCCcceeeeeeec---ccEEEE
Confidence 334569999999999999999999 7788999999 9999999999999999999999999983 322222
Q ss_pred cc------ceeeEEEeec--cceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEE
Q psy13856 104 PK------YFKLTVYSTK--LTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVI 170 (271)
Q Consensus 104 ~~------~~~~~~~~~~--~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~ 170 (271)
.. -.....|++. ...++ +++++++-..++....+.+|.+.++.+.++| ||.+.++|+.||.+.
T Consensus 142 ~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp----DGslcasGgkdg~~~ 217 (315)
T KOG0279|consen 142 IHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP----DGSLCASGGKDGEAM 217 (315)
T ss_pred EecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECC----CCCEEecCCCCceEE
Confidence 22 1233445554 23344 8999966565688889999999999999999 899999999999999
Q ss_pred EEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccc
Q psy13856 171 IWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 171 iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
+||++.+++ +. ..+|...|.+++|+|+.-.|+.+ .+..|+|||+.+. .++.++....
T Consensus 218 LwdL~~~k~--ly-sl~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~---~~v~~l~~d~ 274 (315)
T KOG0279|consen 218 LWDLNEGKN--LY-SLEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESK---AVVEELKLDG 274 (315)
T ss_pred EEEccCCce--eE-eccCCCeEeeEEecCCceeEeec-cCCceEEEeccch---hhhhhccccc
Confidence 999999885 33 34578899999999986555544 4666999999987 5555554443
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=5.3e-25 Score=177.53 Aligned_cols=191 Identities=19% Similarity=0.216 Sum_probs=158.4
Q ss_pred CCCCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc
Q psy13856 30 SPLRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 30 ~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
....+|..||+|+.||.+|+|+. +.++..|.++ |.++.|+.+|++|++++.|+++.+||. .++...+.+
T Consensus 242 ~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgP----I~slKWnk~G~yilS~~vD~ttilwd~---~~g~~~q~f 314 (524)
T KOG0273|consen 242 DWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGP----IFSLKWNKKGTYILSGGVDGTTILWDA---HTGTVKQQF 314 (524)
T ss_pred EecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCc----eEEEEEcCCCCEEEeccCCccEEEEec---cCceEEEee
Confidence 34458999999999999999998 8889999999 999999999999999999999999998 777776665
Q ss_pred ce---e-eEEEeeccceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEc
Q psy13856 106 YF---K-LTVYSTKLTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTS 174 (271)
Q Consensus 106 ~~---~-~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~ 174 (271)
.+ + .-+--.....|+ +.+++ .... .+..++.+|.+.|.++.|+| .+.+|++++.|++++||++
T Consensus 315 ~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~--~P~~t~~GH~g~V~alk~n~----tg~LLaS~SdD~TlkiWs~ 388 (524)
T KOG0273|consen 315 EFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGED--RPVKTFIGHHGEVNALKWNP----TGSLLASCSDDGTLKIWSM 388 (524)
T ss_pred eeccCCccceEEecCceEeecCCCceEEEEEecCC--CcceeeecccCceEEEEECC----CCceEEEecCCCeeEeeec
Confidence 22 2 212222233344 66776 3333 67889999999999999999 5999999999999999999
Q ss_pred CCCceeeeeeeccCCCCeEEEEEecCC---------CEEEEEECCCcEEEEEeCCCCceeEEEEecccchhhh
Q psy13856 175 NDYVTWTPFIMNTFDDVVWNVSWSLTG---------DILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRA 238 (271)
Q Consensus 175 ~~~~~~~~~~~~~h~~~v~~v~~~~~g---------~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 238 (271)
....+ ...+++|...|+.+.|+|.| ..+++++.|++|++||+..+ .++..+..|..++-
T Consensus 389 ~~~~~--~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVy 456 (524)
T KOG0273|consen 389 GQSNS--VHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVY 456 (524)
T ss_pred CCCcc--hhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceE
Confidence 88776 78899999999999999963 57999999999999999988 77777766665543
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.6e-25 Score=187.70 Aligned_cols=169 Identities=18% Similarity=0.208 Sum_probs=145.0
Q ss_pred ccceecccCCCCCCCEEEEccCCCeEEeccc------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeec
Q psy13856 22 LEIETYTESPLRIGHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQ 95 (271)
Q Consensus 22 ~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~ 95 (271)
+...+......+++.++++|+.|++|++||+ ++++++|... |++++|+|+++.+++|+.|++|++||.
T Consensus 202 h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~----v~~~~f~p~g~~i~Sgs~D~tvriWd~-- 275 (456)
T KOG0266|consen 202 HTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTY----VTSVAFSPDGNLLVSGSDDGTVRIWDV-- 275 (456)
T ss_pred cccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCc----eEEEEecCCCCEEEEecCCCcEEEEec--
Confidence 3344566666789999999999999999999 7889999999 999999999999999999999999998
Q ss_pred CCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcC
Q psy13856 96 SSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSN 175 (271)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 175 (271)
..+ ++...+.+|.+.|++++|++ ++.+|++++.|+.|++||+.
T Consensus 276 -------------------------------~~~--~~~~~l~~hs~~is~~~f~~----d~~~l~s~s~d~~i~vwd~~ 318 (456)
T KOG0266|consen 276 -------------------------------RTG--ECVRKLKGHSDGISGLAFSP----DGNLLVSASYDGTIRVWDLE 318 (456)
T ss_pred -------------------------------cCC--eEEEeeeccCCceEEEEECC----CCCEEEEcCCCccEEEEECC
Confidence 233 67888999999999999999 79999999999999999999
Q ss_pred CCceeeeeeeccCCCC--eEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchh
Q psy13856 176 DYVTWTPFIMNTFDDV--VWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 176 ~~~~~~~~~~~~h~~~--v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
++.......+.++... +++++|+|++.++++++.|+.+++||+... .+.....+|...
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~ 378 (456)
T KOG0266|consen 319 TGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNL 378 (456)
T ss_pred CCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCc
Confidence 9882114556666544 999999999999999999999999999876 555555555544
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-25 Score=172.46 Aligned_cols=148 Identities=13% Similarity=0.107 Sum_probs=134.1
Q ss_pred CCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 30 SPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 30 ~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
...|.++.+++|+.|++|+|||+ ..++.+|... |..+++|+..-++++++.|+.|++||+
T Consensus 158 avdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~----vr~vavS~rHpYlFs~gedk~VKCwDL----------- 222 (460)
T KOG0285|consen 158 AVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIET----VRGVAVSKRHPYLFSAGEDKQVKCWDL----------- 222 (460)
T ss_pred eeCCCceeEEecCCCceeEEEEcccCeEEEeecchhhe----eeeeeecccCceEEEecCCCeeEEEec-----------
Confidence 33467889999999999999999 5677889999 999999999999999999999999998
Q ss_pred cceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeee
Q psy13856 105 KYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFI 184 (271)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 184 (271)
..+ +.++.+.||-+.|.+++.+| .-+.|++|+.|.++++||+++... +..
T Consensus 223 ----------------------e~n--kvIR~YhGHlS~V~~L~lhP----Tldvl~t~grDst~RvWDiRtr~~--V~~ 272 (460)
T KOG0285|consen 223 ----------------------EYN--KVIRHYHGHLSGVYCLDLHP----TLDVLVTGGRDSTIRVWDIRTRAS--VHV 272 (460)
T ss_pred ----------------------hhh--hhHHHhccccceeEEEeccc----cceeEEecCCcceEEEeeecccce--EEE
Confidence 233 57788889999999999999 589999999999999999999776 889
Q ss_pred eccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 185 MNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 185 ~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
+.+|..+|.+|.+.|-...+++||.|++|++||+..+.
T Consensus 273 l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk 310 (460)
T KOG0285|consen 273 LSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK 310 (460)
T ss_pred ecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc
Confidence 99999999999999988889999999999999998774
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.4e-26 Score=180.78 Aligned_cols=167 Identities=22% Similarity=0.197 Sum_probs=143.2
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc----eeeecccc-ccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST----ISLLQGSV-YLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~-~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
..+.+...+.+|..++||+.+|.|++|+. ++.+++|. .. |++++|+|+...++++|.|++|++||..
T Consensus 139 s~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~ea----IRdlafSpnDskF~t~SdDg~ikiWdf~---- 210 (464)
T KOG0284|consen 139 SPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEA----IRDLAFSPNDSKFLTCSDDGTIKIWDFR---- 210 (464)
T ss_pred ccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhh----hheeccCCCCceeEEecCCCeEEEEecc----
Confidence 33444555679999999999999999999 55666665 66 9999999999999999999999999983
Q ss_pred CceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc
Q psy13856 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV 178 (271)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 178 (271)
.. +....+.+|.-.|.++.|+| ...++++||.|..|++||.+++.
T Consensus 211 -----------------------------~~--kee~vL~GHgwdVksvdWHP----~kgLiasgskDnlVKlWDprSg~ 255 (464)
T KOG0284|consen 211 -----------------------------MP--KEERVLRGHGWDVKSVDWHP----TKGLIASGSKDNLVKLWDPRSGS 255 (464)
T ss_pred -----------------------------CC--chhheeccCCCCcceeccCC----ccceeEEccCCceeEeecCCCcc
Confidence 11 34455689999999999999 48899999999999999999999
Q ss_pred eeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhhh
Q psy13856 179 TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRA 238 (271)
Q Consensus 179 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 238 (271)
+ +..+.+|...|..+.|+|++++|+++|.|..++++|+++. +++.++++|++.+.
T Consensus 256 c--l~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~ 310 (464)
T KOG0284|consen 256 C--LATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVT 310 (464)
T ss_pred h--hhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhhe
Confidence 8 8899999999999999999999999999999999999854 55666666665544
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4e-24 Score=161.58 Aligned_cols=156 Identities=22% Similarity=0.320 Sum_probs=138.6
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecC
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQS 96 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~ 96 (271)
-.+......|.|++||+||-|.++.||.- +.++.+|... |.+++|+++|++||++++|.++-+|...
T Consensus 62 rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnE----VK~Vaws~sG~~LATCSRDKSVWiWe~d-- 135 (312)
T KOG0645|consen 62 RSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENE----VKCVAWSASGNYLATCSRDKSVWIWEID-- 135 (312)
T ss_pred heeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccc----eeEEEEcCCCCEEEEeeCCCeEEEEEec--
Confidence 34455556679999999999999999986 7889999999 9999999999999999999999999982
Q ss_pred CCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC
Q psy13856 97 SSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 176 (271)
.+..+.+...+++|...|-.+.|+| ...+|+++++|.+|++|+...
T Consensus 136 ------------------------------eddEfec~aVL~~HtqDVK~V~WHP----t~dlL~S~SYDnTIk~~~~~~ 181 (312)
T KOG0645|consen 136 ------------------------------EDDEFECIAVLQEHTQDVKHVIWHP----TEDLLFSCSYDNTIKVYRDED 181 (312)
T ss_pred ------------------------------CCCcEEEEeeeccccccccEEEEcC----CcceeEEeccCCeEEEEeecC
Confidence 3446688999999999999999999 589999999999999999885
Q ss_pred Ccee-eeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 177 YVTW-TPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 177 ~~~~-~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
+..| ....+.+|...|++++|++.|..|++++.|++|+||...
T Consensus 182 dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 182 DDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred CCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 4433 366889999999999999999999999999999999953
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=175.30 Aligned_cols=179 Identities=19% Similarity=0.215 Sum_probs=145.3
Q ss_pred eeceeEeeccc---------cccceecccCCCCCCCEEEEccCCCeEEeccc----------------------------
Q psy13856 10 SCDGLLMTLKP---------TLEIETYTESPLRIGHTLISCDTQAHIGIRST---------------------------- 52 (271)
Q Consensus 10 ~~~~~~~~~~~---------~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~---------------------------- 52 (271)
++||.+..+.. .+.-.++.......|++|++++.|+++.+||.
T Consensus 254 ~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ 333 (524)
T KOG0273|consen 254 SEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFA 333 (524)
T ss_pred ecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEe
Confidence 55666665532 22334566666788999999999999999997
Q ss_pred ------------------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEee
Q psy13856 53 ------------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYST 114 (271)
Q Consensus 53 ------------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~ 114 (271)
..++.+|.+. |.++.|.|.+.+|+++|.|+++++|..
T Consensus 334 ts~td~~i~V~kv~~~~P~~t~~GH~g~----V~alk~n~tg~LLaS~SdD~TlkiWs~--------------------- 388 (524)
T KOG0273|consen 334 TSSTDGCIHVCKVGEDRPVKTFIGHHGE----VNALKWNPTGSLLASCSDDGTLKIWSM--------------------- 388 (524)
T ss_pred ecCCCceEEEEEecCCCcceeeecccCc----eEEEEECCCCceEEEecCCCeeEeeec---------------------
Confidence 5566778888 999999999999999999999999986
Q ss_pred ccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCC-----CCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCC
Q psy13856 115 KLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWG-----LSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFD 189 (271)
Q Consensus 115 ~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-----~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~ 189 (271)
.+. .....+.+|...|..+.|+|... ..+..+++++.|++|++||...+.+ ...+..|.
T Consensus 389 ------------~~~--~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~--i~~f~kH~ 452 (524)
T KOG0273|consen 389 ------------GQS--NSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVP--IHTLMKHQ 452 (524)
T ss_pred ------------CCC--cchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCce--eEeeccCC
Confidence 222 56677888999999999988531 1456899999999999999999987 78899999
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 190 DVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 190 ~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
.+|++|+|+|+|+++|+|+.||.|.||+.+++ +......+
T Consensus 453 ~pVysvafS~~g~ylAsGs~dg~V~iws~~~~---~l~~s~~~ 492 (524)
T KOG0273|consen 453 EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTG---KLVKSYQG 492 (524)
T ss_pred CceEEEEecCCCcEEEecCCCCeeEeccccch---heeEeecC
Confidence 99999999999999999999999999999877 44444444
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-24 Score=182.13 Aligned_cols=166 Identities=19% Similarity=0.246 Sum_probs=144.2
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
+......++|..+++++.|+.+++|+. ...+.+|... |.+++|+|+++++++++.|+++++||..
T Consensus 162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~----v~~~~fs~d~~~l~s~s~D~tiriwd~~---- 233 (456)
T KOG0266|consen 162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRG----VSDVAFSPDGSYLLSGSDDKTLRIWDLK---- 233 (456)
T ss_pred eEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccc----eeeeEECCCCcEEEEecCCceEEEeecc----
Confidence 344555689999999999999999998 4455789999 9999999999999999999999999982
Q ss_pred CceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc
Q psy13856 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV 178 (271)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 178 (271)
..+ ..++++++|...|++++|+| +++++++|+.|++|++||+++++
T Consensus 234 ----------------------------~~~--~~~~~l~gH~~~v~~~~f~p----~g~~i~Sgs~D~tvriWd~~~~~ 279 (456)
T KOG0266|consen 234 ----------------------------DDG--RNLKTLKGHSTYVTSVAFSP----DGNLLVSGSDDGTVRIWDVRTGE 279 (456)
T ss_pred ----------------------------CCC--eEEEEecCCCCceEEEEecC----CCCEEEEecCCCcEEEEeccCCe
Confidence 223 67888999999999999999 57999999999999999999988
Q ss_pred eeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchh
Q psy13856 179 TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 179 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
+ ...+.+|.+.|.+++|++++.+|++++.|+.|+|||+.++..- +...+.++...
T Consensus 280 ~--~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~-~~~~~~~~~~~ 334 (456)
T KOG0266|consen 280 C--VRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKL-CLKLLSGAENS 334 (456)
T ss_pred E--EEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCcee-eeecccCCCCC
Confidence 7 8899999999999999999999999999999999999876321 45556555444
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=170.99 Aligned_cols=206 Identities=17% Similarity=0.285 Sum_probs=165.7
Q ss_pred CcceeEEe-eceeEeecccccc----------ceecccCCCCCCCEEEEccCCCeEEeccc-----eeeecccccccccc
Q psy13856 3 SKEWLLVS-CDGLLMTLKPTLE----------IETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRES 66 (271)
Q Consensus 3 ~~~~~~~~-~~~~~~~~~~~~~----------~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~ 66 (271)
++.|++.. .+|.+.-+++... -.+...+..|+...+++||.||+|+|||. ...+.+|.-.
T Consensus 149 ~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwd---- 224 (464)
T KOG0284|consen 149 NGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWD---- 224 (464)
T ss_pred CCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCC----
Confidence 34555553 3677776665432 22344555668889999999999999999 5677999999
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-ce----eeEEEeeccceee-----eEEEEeeCCceEEeEE
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-YF----KLTVYSTKLTRIL-----ILVRICGGDKWIEETK 136 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~~----~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~ 136 (271)
|.+++|+|....+++||.|..|++||. +++.|+.+. .+ ....|...+.+|+ ..+++.+.+..+.+..
T Consensus 225 VksvdWHP~kgLiasgskDnlVKlWDp---rSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~ 301 (464)
T KOG0284|consen 225 VKSVDWHPTKGLIASGSKDNLVKLWDP---RSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFT 301 (464)
T ss_pred cceeccCCccceeEEccCCceeEeecC---CCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHH
Confidence 999999999999999999999999999 889998776 33 3344566677777 6677633334467788
Q ss_pred ecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q psy13856 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216 (271)
Q Consensus 137 ~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw 216 (271)
+++|+..|+++.|+|. ...+|.+|+.||.|..|.+...++. ...-.+|...|++++|+|-|.+|++|+.|.++++|
T Consensus 302 ~r~Hkkdv~~~~WhP~---~~~lftsgg~Dgsvvh~~v~~~~p~-~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw 377 (464)
T KOG0284|consen 302 YRGHKKDVTSLTWHPL---NESLFTSGGSDGSVVHWVVGLEEPL-GEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFW 377 (464)
T ss_pred hhcchhhheeeccccc---cccceeeccCCCceEEEeccccccc-cCCCcccccceeeeeccccceeEeecCCCcceeee
Confidence 8999999999999997 6889999999999999999844432 44567899999999999999999999999999999
Q ss_pred EeC
Q psy13856 217 KEN 219 (271)
Q Consensus 217 ~~~ 219 (271)
.-.
T Consensus 378 ~r~ 380 (464)
T KOG0284|consen 378 TRN 380 (464)
T ss_pred ccC
Confidence 764
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-24 Score=179.10 Aligned_cols=215 Identities=15% Similarity=0.150 Sum_probs=164.7
Q ss_pred eeceeEeeccccccceecccCCCCCCCEEEEccCCCeEEeccc---------eeeeccccccccccceEEEEcCCC-CeE
Q psy13856 10 SCDGLLMTLKPTLEIETYTESPLRIGHTLISCDTQAHIGIRST---------ISLLQGSVYLRRESNKAGALSPKL-NRS 79 (271)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~---------~~~~~~h~~~~~~~i~~~~~s~~~-~~l 79 (271)
++-|.-.-+-+.++-.+.+.+...+|.+|+|||.|+++++|.+ ++...+|... |.+++++..+ .+|
T Consensus 352 ~~~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~s----vgava~~~~~asff 427 (775)
T KOG0319|consen 352 TLPTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNS----VGAVAGSKLGASFF 427 (775)
T ss_pred ecCCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccc----cceeeecccCccEE
Confidence 3333333344444444555555567889999999999999955 6667899999 9999997644 589
Q ss_pred EEEeCCCcEEEEEeecCCCCce--ee----cc-ce----eeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcc
Q psy13856 80 ATSSFHEAAKHLGTVQSSSPAC--LQ----PK-YF----KLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDW 143 (271)
Q Consensus 80 ~s~s~d~~i~~~d~~~~~~~~~--~~----~~-~~----~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~ 143 (271)
+++|.|+++++|++...+.... .. +. .+ +....+...+.++ ++.+|+.-.+......+.||+..
T Consensus 428 vsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RG 507 (775)
T KOG0319|consen 428 VSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRG 507 (775)
T ss_pred EEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccc
Confidence 9999999999999863111111 00 00 11 2333334455666 77777222233889999999999
Q ss_pred eEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCc
Q psy13856 144 VRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGA 223 (271)
Q Consensus 144 v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~ 223 (271)
|++|.|+|+ .+.++++|.|++|+||.+.+..| .+.+.+|..+|..+.|-.+|..|++++.||-+++|+++++
T Consensus 508 vw~V~Fs~~----dq~laT~SgD~TvKIW~is~fSC--lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~-- 579 (775)
T KOG0319|consen 508 VWCVSFSKN----DQLLATCSGDKTVKIWSISTFSC--LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN-- 579 (775)
T ss_pred eEEEEeccc----cceeEeccCCceEEEEEecccee--eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch--
Confidence 999999994 78999999999999999999998 8999999999999999999999999999999999999887
Q ss_pred eeEEEEecccchhh
Q psy13856 224 WQCITEMGKTSEQR 237 (271)
Q Consensus 224 ~~~~~~~~~~~~~~ 237 (271)
+|+.++..|+...
T Consensus 580 -eC~~tlD~H~Drv 592 (775)
T KOG0319|consen 580 -ECEMTLDAHNDRV 592 (775)
T ss_pred -hhhhhhhhcccee
Confidence 7777777776443
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=159.35 Aligned_cols=204 Identities=13% Similarity=0.107 Sum_probs=166.1
Q ss_pred cccccceecccCCCCCCCEEEEccCCCeEEeccc------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEE
Q psy13856 19 KPTLEIETYTESPLRIGHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLG 92 (271)
Q Consensus 19 ~~~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d 92 (271)
.+.++-++|.....|+|.+||||+.|..|.+|++ ...+++|.++ |..+.|.+|++.+++++.|.+++.||
T Consensus 43 l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgA----VM~l~~~~d~s~i~S~gtDk~v~~wD 118 (338)
T KOG0265|consen 43 LPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGA----VMELHGMRDGSHILSCGTDKTVRGWD 118 (338)
T ss_pred cCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccce----eEeeeeccCCCEEEEecCCceEEEEe
Confidence 4677788999999999999999999999999997 7788999999 99999999999999999999999999
Q ss_pred eecCCCCceeecc-ceeeEEEeec----cceee------eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEE
Q psy13856 93 TVQSSSPACLQPK-YFKLTVYSTK----LTRIL------ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIA 161 (271)
Q Consensus 93 ~~~~~~~~~~~~~-~~~~~~~~~~----~~~l~------~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~ 161 (271)
. +++++.+.. .+...+.+++ +..++ +++++.+.++-..++.+. ..-.++++.|.. ++..+.
T Consensus 119 ~---~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d----~s~qv~ 190 (338)
T KOG0265|consen 119 A---ETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKD----TSDQVI 190 (338)
T ss_pred c---ccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecc----ccccee
Confidence 9 888887766 3444444443 33333 888883322214444443 456789999998 589999
Q ss_pred EEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC-ceeEEEEecccchh
Q psy13856 162 SCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG-AWQCITEMGKTSEQ 236 (271)
Q Consensus 162 s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~-~~~~~~~~~~~~~~ 236 (271)
+|+-|+.|++||++.... ...+.+|.+.|+.+..+|+|.++.+-+-|.++++||++.-- ...++..+.++.-.
T Consensus 191 sggIdn~ikvWd~r~~d~--~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hn 264 (338)
T KOG0265|consen 191 SGGIDNDIKVWDLRKNDG--LYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHN 264 (338)
T ss_pred eccccCceeeeccccCcc--eEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhh
Confidence 999999999999998887 88999999999999999999999999999999999997532 23446666665433
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.6e-24 Score=157.69 Aligned_cols=194 Identities=39% Similarity=0.630 Sum_probs=155.5
Q ss_pred CCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCC--CCeEEEEeCCCcEEEEEeecCCCCceee
Q psy13856 33 RIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPK--LNRSATSSFHEAAKHLGTVQSSSPACLQ 103 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~~~d~~~~~~~~~~~ 103 (271)
.-|.+||+|+.||.|.||.- ......|... |++++|.|. |-.|++++.||.|.+++.... .+-...
T Consensus 68 k~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~S----VNsV~wapheygl~LacasSDG~vsvl~~~~~-g~w~t~ 142 (299)
T KOG1332|consen 68 KFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSAS----VNSVAWAPHEYGLLLACASSDGKVSVLTYDSS-GGWTTS 142 (299)
T ss_pred ccCcEeeEeecCceEEEEecCCCchhhhhhhhhhccc----ceeecccccccceEEEEeeCCCcEEEEEEcCC-CCccch
Confidence 47999999999999999997 5666788888 999999985 458999999999999987422 111111
Q ss_pred ------ccceeeEEEeec--------------cceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCC
Q psy13856 104 ------PKYFKLTVYSTK--------------LTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLS 156 (271)
Q Consensus 104 ------~~~~~~~~~~~~--------------~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 156 (271)
..+.+...+++. .++|+ +.|+| .+.+.|...+.|.+|.+.|+.++|+|..+..
T Consensus 143 ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~ 222 (299)
T KOG1332|consen 143 KIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLP 222 (299)
T ss_pred hhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCC
Confidence 113334444433 24455 78888 4455778888899999999999999976555
Q ss_pred CcEEEEEeCCCeEEEEEcCCC-ceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEec
Q psy13856 157 KCMIASCSQDRKVIIWTSNDY-VTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
..+||+|++||++.||..+.. +.|....++.+...++++.|++.|++|+.++.|+.|.+|.-+..++|+++....
T Consensus 223 ~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~~~ 298 (299)
T KOG1332|consen 223 KSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVGEVS 298 (299)
T ss_pred ceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCCCCcEEEccccC
Confidence 679999999999999998754 456566778888999999999999999999999999999999999999987653
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-22 Score=155.28 Aligned_cols=214 Identities=14% Similarity=0.068 Sum_probs=168.3
Q ss_pred EeeceeEeecccc--ccce--------ecccCCCCCCCEEEEccCCCeEEeccc-----------eeeeccccccccccc
Q psy13856 9 VSCDGLLMTLKPT--LEIE--------TYTESPLRIGHTLISCDTQAHIGIRST-----------ISLLQGSVYLRRESN 67 (271)
Q Consensus 9 ~~~~~~~~~~~~~--~~~~--------~~~~~~~~~g~~l~s~s~d~~i~lwd~-----------~~~~~~h~~~~~~~i 67 (271)
-+.||.|..+... -+.+ +.++...|.|+++|+|+.|+...||++ .+.+.+|++- +
T Consensus 73 aSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgy----l 148 (343)
T KOG0286|consen 73 ASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGY----L 148 (343)
T ss_pred eccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccce----e
Confidence 3569988887531 1222 233444589999999999999999998 4568899999 9
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-ceeeEEEee-----ccceee-----eEEEEeeCCceEEeEE
Q psy13856 68 KAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-YFKLTVYST-----KLTRIL-----ILVRICGGDKWIEETK 136 (271)
Q Consensus 68 ~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~-----~~~~l~-----~~v~i~~~~~~~~~~~ 136 (271)
.++.|-+| ..|+++|.|.+.-+||+ ++++....+ ++..-+.+. +++.|+ ...++++.+.-.+.+.
T Consensus 149 ScC~f~dD-~~ilT~SGD~TCalWDi---e~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qt 224 (343)
T KOG0286|consen 149 SCCRFLDD-NHILTGSGDMTCALWDI---ETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQT 224 (343)
T ss_pred EEEEEcCC-CceEecCCCceEEEEEc---ccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEe
Confidence 99999985 57889999999999999 888877776 443333332 356666 6677733222289999
Q ss_pred ecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeec--cCCCCeEEEEEecCCCEEEEEECCCcEE
Q psy13856 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMN--TFDDVVWNVSWSLTGDILTVSCGDNSVS 214 (271)
Q Consensus 137 ~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~v~~~~~g~~l~s~s~D~~v~ 214 (271)
|.+|+..|++|+|.| +|.-|++|+.|+++++||++.... +..+. ....+|++++|+..|++|++|..|.++.
T Consensus 225 F~ghesDINsv~ffP----~G~afatGSDD~tcRlyDlRaD~~--~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~ 298 (343)
T KOG0286|consen 225 FEGHESDINSVRFFP----SGDAFATGSDDATCRLYDLRADQE--LAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCN 298 (343)
T ss_pred ecccccccceEEEcc----CCCeeeecCCCceeEEEeecCCcE--EeeeccCcccCCceeEEEcccccEEEeeecCCcee
Confidence 999999999999999 699999999999999999999876 33333 3345899999999999999999999999
Q ss_pred EEEeCCCCceeEEEEecccchhhhh
Q psy13856 215 LWKENTDGAWQCITEMGKTSEQRAI 239 (271)
Q Consensus 215 iw~~~~~~~~~~~~~~~~~~~~~~~ 239 (271)
+||.-.+ +.+..+.+|+.....
T Consensus 299 vWDtlk~---e~vg~L~GHeNRvSc 320 (343)
T KOG0286|consen 299 VWDTLKG---ERVGVLAGHENRVSC 320 (343)
T ss_pred Eeecccc---ceEEEeeccCCeeEE
Confidence 9998766 777888888766543
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-24 Score=179.22 Aligned_cols=161 Identities=19% Similarity=0.298 Sum_probs=147.4
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccce
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF 107 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~ 107 (271)
.-.+.+++|++|..||+|+. +..+.+|.+- |++++.+|..-+++|+|.|-.|++|+-
T Consensus 65 aRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~Dy----IR~iavHPt~P~vLtsSDDm~iKlW~w-------------- 126 (794)
T KOG0276|consen 65 ARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDY----IRSIAVHPTLPYVLTSSDDMTIKLWDW-------------- 126 (794)
T ss_pred eccceEEEecCCceEEEEecccceeeEEeeccccc----eeeeeecCCCCeEEecCCccEEEEeec--------------
Confidence 34567999999999999999 8889999999 999999999999999999999999996
Q ss_pred eeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeecc
Q psy13856 108 KLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187 (271)
Q Consensus 108 ~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 187 (271)
++.|.+.++++||+..|.+|+|+|+ |.+.|++++-|++|++|.+....+ ...+.+
T Consensus 127 --------------------e~~wa~~qtfeGH~HyVMqv~fnPk---D~ntFaS~sLDrTVKVWslgs~~~--nfTl~g 181 (794)
T KOG0276|consen 127 --------------------ENEWACEQTFEGHEHYVMQVAFNPK---DPNTFASASLDRTVKVWSLGSPHP--NFTLEG 181 (794)
T ss_pred --------------------cCceeeeeEEcCcceEEEEEEecCC---CccceeeeeccccEEEEEcCCCCC--ceeeec
Confidence 3567899999999999999999999 999999999999999999998876 889999
Q ss_pred CCCCeEEEEEecC--CCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhhhh
Q psy13856 188 FDDVVWNVSWSLT--GDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRAI 239 (271)
Q Consensus 188 h~~~v~~v~~~~~--g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 239 (271)
|...|+||+|-+- ..+|++|++|.+++|||..+. .|++++++|..+...
T Consensus 182 HekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~ 232 (794)
T KOG0276|consen 182 HEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSF 232 (794)
T ss_pred cccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceE
Confidence 9999999999874 479999999999999999987 889999998766553
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-25 Score=171.44 Aligned_cols=183 Identities=14% Similarity=0.156 Sum_probs=146.2
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccce-
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF- 107 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~- 107 (271)
|...+++|..|++|++||. ...+.+|++. |.|+.|. .+.+++||.|.+|++||. ++++++++..+
T Consensus 206 DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGS----VLCLqyd--~rviisGSSDsTvrvWDv---~tge~l~tlihH 276 (499)
T KOG0281|consen 206 DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGS----VLCLQYD--ERVIVSGSSDSTVRVWDV---NTGEPLNTLIHH 276 (499)
T ss_pred cchhhhcccccCceEEeccccHHHHHhhhcCCCc----EEeeecc--ceEEEecCCCceEEEEec---cCCchhhHHhhh
Confidence 6678999999999999998 7889999999 9999995 469999999999999999 88888887632
Q ss_pred eeEEEeec--cceee-----eEEEE---eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC
Q psy13856 108 KLTVYSTK--LTRIL-----ILVRI---CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY 177 (271)
Q Consensus 108 ~~~~~~~~--~~~l~-----~~v~i---~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 177 (271)
...+.... ..+.+ ..+.+ .......+.+.+.||.+.|+.+.|+. .+|++++.|++|++|++.+.
T Consensus 277 ceaVLhlrf~ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~------kyIVsASgDRTikvW~~st~ 350 (499)
T KOG0281|consen 277 CEAVLHLRFSNGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD------KYIVSASGDRTIKVWSTSTC 350 (499)
T ss_pred cceeEEEEEeCCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc------ceEEEecCCceEEEEeccce
Confidence 22222211 22222 45555 12222244566789999999999975 59999999999999999998
Q ss_pred ceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhhh
Q psy13856 178 VTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRA 238 (271)
Q Consensus 178 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~ 238 (271)
+. +..+.+|...|-|+.+ .++++++||.|++|++||+..+ .++..+++|++-.-
T Consensus 351 ef--vRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvR 404 (499)
T KOG0281|consen 351 EF--VRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVR 404 (499)
T ss_pred ee--ehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhh
Confidence 87 8899999999988876 5889999999999999999988 77777888775543
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.6e-23 Score=160.37 Aligned_cols=177 Identities=16% Similarity=0.280 Sum_probs=149.1
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
-+....|.|++|+|++.|.+|+.|++ +.++.+|..+ |..++.+.||..+++++.|.++++|-. .+++|
T Consensus 197 S~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ew----vr~v~v~~DGti~As~s~dqtl~vW~~---~t~~~ 269 (406)
T KOG0295|consen 197 SSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEW----VRMVRVNQDGTIIASCSNDQTLRVWVV---ATKQC 269 (406)
T ss_pred eeEEEEecCCeeeecccccceeEEecccceeEEeccCchHh----EEEEEecCCeeEEEecCCCceEEEEEe---ccchh
Confidence 34444578999999999999999999 8999999999 999999999999999999999999998 66644
Q ss_pred eecc---ceeeE--EEeec---------------cceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCC
Q psy13856 102 LQPK---YFKLT--VYSTK---------------LTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWG 154 (271)
Q Consensus 102 ~~~~---~~~~~--~~~~~---------------~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 154 (271)
.... .++.. .+.+. +..+. ++|++ ...+ .++.++.+|..+|..++|+|
T Consensus 270 k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg--~cL~tL~ghdnwVr~~af~p--- 344 (406)
T KOG0295|consen 270 KAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG--MCLFTLVGHDNWVRGVAFSP--- 344 (406)
T ss_pred hhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC--eEEEEEecccceeeeeEEcC---
Confidence 3322 22111 11111 23444 88888 4455 89999999999999999999
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEe
Q psy13856 155 LSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 155 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~ 218 (271)
.|+||+++..|+++++||+++..+ ...+..|+..|++++|+.+..++++|+-|.++++|..
T Consensus 345 -~Gkyi~ScaDDktlrvwdl~~~~c--mk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 345 -GGKYILSCADDKTLRVWDLKNLQC--MKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred -CCeEEEEEecCCcEEEEEecccee--eeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 699999999999999999999998 7888899999999999999999999999999999974
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.7e-23 Score=161.14 Aligned_cols=183 Identities=17% Similarity=0.251 Sum_probs=148.9
Q ss_pred cceecccCCCCCCCEEEEccCCCeEEeccc------------------------------eeeeccccccccccceEEEE
Q psy13856 23 EIETYTESPLRIGHTLISCDTQAHIGIRST------------------------------ISLLQGSVYLRRESNKAGAL 72 (271)
Q Consensus 23 ~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~------------------------------~~~~~~h~~~~~~~i~~~~~ 72 (271)
+-.+-+++..++|..+++||.|.+|+||+. +.++.+|++. |.++.|
T Consensus 193 k~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~----Vs~V~w 268 (423)
T KOG0313|consen 193 KRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEP----VSSVVW 268 (423)
T ss_pred ccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccc----eeeEEE
Confidence 334455566689999999999999999993 6678899999 999999
Q ss_pred cCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeec----cceee-----eEEEE----eeCCceEEeEEecC
Q psy13856 73 SPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTK----LTRIL-----ILVRI----CGGDKWIEETKLEN 139 (271)
Q Consensus 73 s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~l~-----~~v~i----~~~~~~~~~~~~~~ 139 (271)
++ ...++++|+|.+|+.||+ .++.+......+..+.+.+ .++++ ..+++ ..++. -..+.+.+
T Consensus 269 ~d-~~v~yS~SwDHTIk~WDl---etg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs-~v~~s~~g 343 (423)
T KOG0313|consen 269 SD-ATVIYSVSWDHTIKVWDL---ETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGS-VVSQSLIG 343 (423)
T ss_pred cC-CCceEeecccceEEEEEe---ecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCc-eeEEeeec
Confidence 98 678999999999999999 7777776664433333333 45555 67777 12222 45678899
Q ss_pred CCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 140 h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
|.+.|.++.|+|. +...|++|+.|+++++||+|..... +..+.+|.+.|.++.|+. +..+++|+.|++|+|+.-.
T Consensus 344 H~nwVssvkwsp~---~~~~~~S~S~D~t~klWDvRS~k~p-lydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 344 HKNWVSSVKWSPT---NEFQLVSGSYDNTVKLWDVRSTKAP-LYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred chhhhhheecCCC---CceEEEEEecCCeEEEEEeccCCCc-ceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 9999999999998 7889999999999999999987622 788999999999999974 5789999999999999744
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.4e-24 Score=168.28 Aligned_cols=163 Identities=15% Similarity=0.145 Sum_probs=140.3
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc-------------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEE
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST-------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKH 90 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~ 90 (271)
.+.-+....|||++|++||.||-|.+|++ -..+--+... |.|+.|+.|...+++|+.||.|++
T Consensus 214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~a----Vlci~FSRDsEMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDA----VLCISFSRDSEMLASGSQDGKIKV 289 (508)
T ss_pred cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccc----eEEEeecccHHHhhccCcCCcEEE
Confidence 33444556689999999999999999998 1223345666 999999999999999999999999
Q ss_pred EEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEe-cCCCcceEEEEEccCCCCCCcEEEEEeCCCeE
Q psy13856 91 LGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKL-ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 169 (271)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i 169 (271)
|.+ .++.|++ .| +.|...|+++.|+. |+..+++++.|.++
T Consensus 290 Wri---~tG~ClR--------------------------------rFdrAHtkGvt~l~FSr----D~SqiLS~sfD~tv 330 (508)
T KOG0275|consen 290 WRI---ETGQCLR--------------------------------RFDRAHTKGVTCLSFSR----DNSQILSASFDQTV 330 (508)
T ss_pred EEE---ecchHHH--------------------------------HhhhhhccCeeEEEEcc----CcchhhcccccceE
Confidence 999 5555554 33 27999999999999 79999999999999
Q ss_pred EEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccc
Q psy13856 170 IIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
++--+..+++ .+.+.+|.+.|+.+.|.++|.++++++.||+|++|+..+. +|+.+++...
T Consensus 331 RiHGlKSGK~--LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktt---eC~~Tfk~~~ 390 (508)
T KOG0275|consen 331 RIHGLKSGKC--LKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTT---ECLSTFKPLG 390 (508)
T ss_pred EEeccccchh--HHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcch---hhhhhccCCC
Confidence 9999999998 8899999999999999999999999999999999999887 7777776544
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-22 Score=152.82 Aligned_cols=152 Identities=14% Similarity=0.158 Sum_probs=129.8
Q ss_pred ecccCCCCC-CCEEEEccCCCeEEeccc------eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCC
Q psy13856 26 TYTESPLRI-GHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 26 ~~~~~~~~~-g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
.|.....++ .+.+++++.||.++|||. +..++.|... |.++.|++ +...++++|.|++||+|+-.
T Consensus 63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~E----V~Svdwn~~~r~~~ltsSWD~TiKLW~~~--- 135 (311)
T KOG0277|consen 63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKRE----VYSVDWNTVRRRIFLTSSWDGTIKLWDPN--- 135 (311)
T ss_pred eeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhh----eEEeccccccceeEEeeccCCceEeecCC---
Confidence 344444433 457889999999999998 8889999999 99999998 55578888999999999962
Q ss_pred CCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC
Q psy13856 98 SPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY 177 (271)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 177 (271)
.. ..++++.+|...|...+|+|. .++++++++.|+++++||++..
T Consensus 136 ------------------------------r~--~Sv~Tf~gh~~~Iy~a~~sp~---~~nlfas~Sgd~~l~lwdvr~~ 180 (311)
T KOG0277|consen 136 ------------------------------RP--NSVQTFNGHNSCIYQAAFSPH---IPNLFASASGDGTLRLWDVRSP 180 (311)
T ss_pred ------------------------------CC--cceEeecCCccEEEEEecCCC---CCCeEEEccCCceEEEEEecCC
Confidence 12 567789999999999999998 8999999999999999999987
Q ss_pred ceeeeeeeccCCCCeEEEEEec-CCCEEEEEECCCcEEEEEeCCC
Q psy13856 178 VTWTPFIMNTFDDVVWNVSWSL-TGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 178 ~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.. ...+..|...+.|+.|+. +..+|++|+.|+.|+.||++.-
T Consensus 181 gk--~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~ 223 (311)
T KOG0277|consen 181 GK--FMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNL 223 (311)
T ss_pred Cc--eeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhc
Confidence 65 455889999999999986 6789999999999999999753
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-23 Score=171.64 Aligned_cols=176 Identities=16% Similarity=0.197 Sum_probs=147.5
Q ss_pred CCcceeEEeec-eeEeecc--cccccee--------cccCCCCCCCEEEEccCCCeEEeccc------eeeecccccccc
Q psy13856 2 LSKEWLLVSCD-GLLMTLK--PTLEIET--------YTESPLRIGHTLISCDTQAHIGIRST------ISLLQGSVYLRR 64 (271)
Q Consensus 2 ~~~~~~~~~~~-~~~~~~~--~~~~~~~--------~~~~~~~~g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~ 64 (271)
+-|.|+++-.| ..+..+. -..++.. .+....|...+++|+|+|-+|++||. .+++.+|+.-
T Consensus 65 aRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~Hy-- 142 (794)
T KOG0276|consen 65 ARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHY-- 142 (794)
T ss_pred eccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceE--
Confidence 45789998774 4443332 1111222 34444588899999999999999999 7899999999
Q ss_pred ccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcc
Q psy13856 65 ESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDW 143 (271)
Q Consensus 65 ~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~ 143 (271)
|.+++|.| |.+.+++++-|++|++|.+ .+. .+..++++|+..
T Consensus 143 --VMqv~fnPkD~ntFaS~sLDrTVKVWsl---------------------------------gs~--~~nfTl~gHekG 185 (794)
T KOG0276|consen 143 --VMQVAFNPKDPNTFASASLDRTVKVWSL---------------------------------GSP--HPNFTLEGHEKG 185 (794)
T ss_pred --EEEEEecCCCccceeeeeccccEEEEEc---------------------------------CCC--CCceeeeccccC
Confidence 99999999 7789999999999999998 222 567788899999
Q ss_pred eEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 144 VRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 144 v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
|++|.+-|.+ |..+|++|+.|.+++|||.++..| +..+.+|...|..+.|+|.=.++++||.||+++||+-.+
T Consensus 186 VN~Vdyy~~g--dkpylIsgaDD~tiKvWDyQtk~C--V~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~T 258 (794)
T KOG0276|consen 186 VNCVDYYTGG--DKPYLISGADDLTIKVWDYQTKSC--VQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKT 258 (794)
T ss_pred cceEEeccCC--CcceEEecCCCceEEEeecchHHH--HHHhhcccccceEEEecCCCcEEEEecCCccEEEecCcc
Confidence 9999999842 567999999999999999999888 899999999999999999999999999999999998754
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=9.4e-23 Score=174.87 Aligned_cols=165 Identities=16% Similarity=0.123 Sum_probs=134.5
Q ss_pred cccceecccCCCCCCCEEEEccCCCeEEeccc------------------------------------------------
Q psy13856 21 TLEIETYTESPLRIGHTLISCDTQAHIGIRST------------------------------------------------ 52 (271)
Q Consensus 21 ~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~------------------------------------------------ 52 (271)
.++-.+++....+||++||+||.|+.||||.+
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 44455677777889999999999999999976
Q ss_pred -----------------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeec
Q psy13856 53 -----------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTK 115 (271)
Q Consensus 53 -----------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 115 (271)
+..+.+|.+. |.++.||.+ ++|+++|.|.++|+|+. ..
T Consensus 345 s~~~~~p~~~f~f~ekP~~ef~GHt~D----ILDlSWSKn-~fLLSSSMDKTVRLWh~---~~----------------- 399 (712)
T KOG0283|consen 345 SPCVLLPLKAFVFSEKPFCEFKGHTAD----ILDLSWSKN-NFLLSSSMDKTVRLWHP---GR----------------- 399 (712)
T ss_pred CccccCCCccccccccchhhhhccchh----heecccccC-CeeEeccccccEEeecC---CC-----------------
Confidence 3445678888 999999976 58999999999999998 22
Q ss_pred cceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEE
Q psy13856 116 LTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNV 195 (271)
Q Consensus 116 ~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v 195 (271)
. +++..|. |.+.|+||+|+|. |.+||++|+-|+.|+||++...+ +.....-..-|+++
T Consensus 400 -------------~--~CL~~F~-HndfVTcVaFnPv---DDryFiSGSLD~KvRiWsI~d~~---Vv~W~Dl~~lITAv 457 (712)
T KOG0283|consen 400 -------------K--ECLKVFS-HNDFVTCVAFNPV---DDRYFISGSLDGKVRLWSISDKK---VVDWNDLRDLITAV 457 (712)
T ss_pred -------------c--ceeeEEe-cCCeeEEEEeccc---CCCcEeecccccceEEeecCcCe---eEeehhhhhhheeE
Confidence 2 5666666 9999999999999 99999999999999999998866 44444445789999
Q ss_pred EEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 196 SWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 196 ~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
+|.|+|++.+.|+.+|.+++|+.... ++..-..+..+
T Consensus 458 cy~PdGk~avIGt~~G~C~fY~t~~l-k~~~~~~I~~~ 494 (712)
T KOG0283|consen 458 CYSPDGKGAVIGTFNGYCRFYDTEGL-KLVSDFHIRLH 494 (712)
T ss_pred EeccCCceEEEEEeccEEEEEEccCC-eEEEeeeEeec
Confidence 99999999999999999999998743 33333334333
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.1e-22 Score=171.19 Aligned_cols=162 Identities=17% Similarity=0.200 Sum_probs=131.5
Q ss_pred CCCCEEEEccCCCeEEeccc------------------eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEe
Q psy13856 33 RIGHTLISCDTQAHIGIRST------------------ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGT 93 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~------------------~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~ 93 (271)
+|+..+++++.+.....|+. ...+.+|.+. |.+++|+| ++++|++|+.|++|++|++
T Consensus 30 ~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~----V~~v~fsP~d~~~LaSgS~DgtIkIWdi 105 (493)
T PTZ00421 30 WDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGP----IIDVAFNPFDPQKLFTASEDGTIMGWGI 105 (493)
T ss_pred CCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCC----EEEEEEcCCCCCEEEEEeCCCEEEEEec
Confidence 36667788888788888874 1246789999 99999999 8899999999999999998
Q ss_pred ecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEE
Q psy13856 94 VQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT 173 (271)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd 173 (271)
. ...... ... ..+..+.+|...|.+++|+|. ...+|++|+.|+.|++||
T Consensus 106 ~---~~~~~~-----------------------~~~--~~l~~L~gH~~~V~~l~f~P~---~~~iLaSgs~DgtVrIWD 154 (493)
T PTZ00421 106 P---EEGLTQ-----------------------NIS--DPIVHLQGHTKKVGIVSFHPS---AMNVLASAGADMVVNVWD 154 (493)
T ss_pred C---CCcccc-----------------------ccC--cceEEecCCCCcEEEEEeCcC---CCCEEEEEeCCCEEEEEE
Confidence 3 221110 001 356678899999999999995 457999999999999999
Q ss_pred cCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccc
Q psy13856 174 SNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 174 ~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
++++.. ...+.+|...|.+++|+|+|.+|++++.|++|+|||++++ +.+.++..|.
T Consensus 155 l~tg~~--~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg---~~v~tl~~H~ 210 (493)
T PTZ00421 155 VERGKA--VEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDG---TIVSSVEAHA 210 (493)
T ss_pred CCCCeE--EEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCC---cEEEEEecCC
Confidence 998775 6678889999999999999999999999999999999876 4555555554
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.2e-22 Score=153.24 Aligned_cols=197 Identities=23% Similarity=0.380 Sum_probs=142.7
Q ss_pred CCCEEEEccCCCeEEeccc--------------eeeeccccccccccceEEEEcC--CCCeEEEEeCCCcEEEEEeecCC
Q psy13856 34 IGHTLISCDTQAHIGIRST--------------ISLLQGSVYLRRESNKAGALSP--KLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~--------------~~~~~~h~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
-|+.+|+||.|++++||.- ..++...... |+++.|.| -|-.|++++.||++|+|+..+..
T Consensus 72 fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~Dsrss----V~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~ 147 (361)
T KOG2445|consen 72 FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSS----VTDVKFAPKHLGLKLAAASADGILRIYEAPDPM 147 (361)
T ss_pred ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcc----eeEEEecchhcceEEEEeccCcEEEEEecCCcc
Confidence 4667777777777777764 2233334444 88899988 46689999999999999875332
Q ss_pred CCceeec---cc--------ee----eEEEeec---cceee----------eEEEE----eeCCceEEeEEecCCCcceE
Q psy13856 98 SPACLQP---KY--------FK----LTVYSTK---LTRIL----------ILVRI----CGGDKWIEETKLENHSDWVR 145 (271)
Q Consensus 98 ~~~~~~~---~~--------~~----~~~~~~~---~~~l~----------~~v~i----~~~~~~~~~~~~~~h~~~v~ 145 (271)
....... +. .. ...++.. ...++ +.+.| ...++|..+.++.+|..+|+
T Consensus 148 nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~ 227 (361)
T KOG2445|consen 148 NLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIR 227 (361)
T ss_pred ccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcce
Confidence 2211111 01 11 1112211 23333 45666 33347888899999999999
Q ss_pred EEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc------------------eeeeeeeccCCCCeEEEEEecCCCEEEEE
Q psy13856 146 DVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV------------------TWTPFIMNTFDDVVWNVSWSLTGDILTVS 207 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~------------------~~~~~~~~~h~~~v~~v~~~~~g~~l~s~ 207 (271)
+|+|.|+.+++..+||+++.|| |+||.++... ...+..+..|.+.|+++.|+-.|..|++.
T Consensus 228 di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsSt 306 (361)
T KOG2445|consen 228 DISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSST 306 (361)
T ss_pred eeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeec
Confidence 9999999888889999999999 9999997311 11144577899999999999999999999
Q ss_pred ECCCcEEEEEeCCCCceeEEEEecccch
Q psy13856 208 CGDNSVSLWKENTDGAWQCITEMGKTSE 235 (271)
Q Consensus 208 s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 235 (271)
+.||.|++|..+....|+|...++.+..
T Consensus 307 GdDG~VRLWkany~n~~kC~sv~~~e~~ 334 (361)
T KOG2445|consen 307 GDDGCVRLWKANYNNLWKCTSVLKAEGS 334 (361)
T ss_pred CCCceeeehhhhhhhhheeeeEEeccCC
Confidence 9999999999999999999998876544
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1e-22 Score=152.77 Aligned_cols=195 Identities=18% Similarity=0.187 Sum_probs=152.1
Q ss_pred ceeEeeccc-----------cccceecccCCCC-CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcC
Q psy13856 12 DGLLMTLKP-----------TLEIETYTESPLR-IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSP 74 (271)
Q Consensus 12 ~~~~~~~~~-----------~~~~~~~~~~~~~-~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~ 74 (271)
||.|.-+.. +++-|+|+....+ +++.++++|.|++|++|+. +.++.+|... |+..+|+|
T Consensus 82 DGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~----Iy~a~~sp 157 (311)
T KOG0277|consen 82 DGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSC----IYQAAFSP 157 (311)
T ss_pred CceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccE----EEEEecCC
Confidence 888776542 2234455555443 4567888899999999998 8899999999 99999999
Q ss_pred -CCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeec----cc-eee-----eEEEE---eeCCceEEeEEecCC
Q psy13856 75 -KLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTK----LT-RIL-----ILVRI---CGGDKWIEETKLENH 140 (271)
Q Consensus 75 -~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~-~l~-----~~v~i---~~~~~~~~~~~~~~h 140 (271)
.++.++++|.|+++++||++ ..++.+....+...+.+++ .. .++ +.|+. ..-+ .++.++.+|
T Consensus 158 ~~~nlfas~Sgd~~l~lwdvr--~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh 233 (311)
T KOG0277|consen 158 HIPNLFASASGDGTLRLWDVR--SPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGH 233 (311)
T ss_pred CCCCeEEEccCCceEEEEEec--CCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCC
Confidence 77899999999999999986 4455554444444444444 22 333 77777 2222 567888999
Q ss_pred CcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEec-CCCEEEEEECCCcEEEEEe
Q psy13856 141 SDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSL-TGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 141 ~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~v~iw~~ 218 (271)
.-.|..|+|+|. ...+||++++|-+++|||...+... ......|++-|..+.|++ ++.++|+++.|+.++||+.
T Consensus 234 ~~AVRkvk~Sph---~~~lLaSasYDmT~riw~~~~~ds~-~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 234 GLAVRKVKFSPH---HASLLASASYDMTVRIWDPERQDSA-IETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred ceEEEEEecCcc---hhhHhhhccccceEEecccccchhh-hhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 999999999997 6889999999999999999865432 556778999999999998 5789999999999999985
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-21 Score=158.33 Aligned_cols=185 Identities=16% Similarity=0.166 Sum_probs=143.0
Q ss_pred CCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCCeEEEEeCC----CcEEEEEeecCCCCce
Q psy13856 33 RIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH----EAAKHLGTVQSSSPAC 101 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d----~~i~~~d~~~~~~~~~ 101 (271)
|+|.++|+|...|+|||||. ...++.-.++ |.+++|++|+++|++.+.. |.+.+||. +..
T Consensus 69 PsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~----I~Di~Wd~ds~RI~avGEGrerfg~~F~~DS-----G~S 139 (603)
T KOG0318|consen 69 PSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGP----IKDISWDFDSKRIAAVGEGRERFGHVFLWDS-----GNS 139 (603)
T ss_pred CCceEEeecCCcCcEEEEeccCcceeeeeeeeecccc----cccceeCCCCcEEEEEecCccceeEEEEecC-----CCc
Confidence 57999999999999999998 2344555667 9999999999998887643 34545664 333
Q ss_pred eecc-ceeeEEEeec-----cceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEE
Q psy13856 102 LQPK-YFKLTVYSTK-----LTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVI 170 (271)
Q Consensus 102 ~~~~-~~~~~~~~~~-----~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~ 170 (271)
+-.+ ++...+.+++ .-+++ +.+.+.+..+++...++..|..-|.++.|+| ||.+|++.+.||++.
T Consensus 140 vGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysP----DG~~Fat~gsDgki~ 215 (603)
T KOG0318|consen 140 VGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSP----DGSRFATAGSDGKIY 215 (603)
T ss_pred cceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECC----CCCeEEEecCCccEE
Confidence 3333 3333333333 12222 5555555566788888999999999999999 799999999999999
Q ss_pred EEEcCCCceeeeeeec---cCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccch
Q psy13856 171 IWTSNDYVTWTPFIMN---TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSE 235 (271)
Q Consensus 171 iwd~~~~~~~~~~~~~---~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 235 (271)
+||-.+++. +..+. +|.+.|++++|+||+..+++++.|.+++|||+.++ +.++++.-...
T Consensus 216 iyDGktge~--vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~---slv~t~~~~~~ 278 (603)
T KOG0318|consen 216 IYDGKTGEK--VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTN---SLVSTWPMGST 278 (603)
T ss_pred EEcCCCccE--EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeecc---ceEEEeecCCc
Confidence 999999886 55555 89999999999999999999999999999999987 66666654433
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.4e-23 Score=164.20 Aligned_cols=188 Identities=18% Similarity=0.143 Sum_probs=135.6
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc--------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeec
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST--------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQ 95 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~ 95 (271)
.|++-...++||++|||++.|.+..+|++ ..++.+|... |.-+.||||.++|++|+.|..+++||.
T Consensus 225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~----V~yi~wSPDdryLlaCg~~e~~~lwDv-- 298 (519)
T KOG0293|consen 225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQP----VSYIMWSPDDRYLLACGFDEVLSLWDV-- 298 (519)
T ss_pred CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCc----eEEEEECCCCCeEEecCchHheeeccC--
Confidence 55666667789999999999999999998 5678899999 999999999999999999999999998
Q ss_pred CCCCceeecc------ceeeEEEeeccceee---------------------eEEE--------EeeCCceEEeE-----
Q psy13856 96 SSSPACLQPK------YFKLTVYSTKLTRIL---------------------ILVR--------ICGGDKWIEET----- 135 (271)
Q Consensus 96 ~~~~~~~~~~------~~~~~~~~~~~~~l~---------------------~~v~--------i~~~~~~~~~~----- 135 (271)
.++.+.... ....+.|.+++..++ ..++ +..++++-...
T Consensus 299 -~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~ 377 (519)
T KOG0293|consen 299 -DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKK 377 (519)
T ss_pred -CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEecccc
Confidence 555554333 124455556544443 0000 01111100000
Q ss_pred --E----------ecCCCcceEEEEEccC-----------------------------------------CCCCCcEEEE
Q psy13856 136 --K----------LENHSDWVRDVAWAPS-----------------------------------------WGLSKCMIAS 162 (271)
Q Consensus 136 --~----------~~~h~~~v~~v~~~p~-----------------------------------------~~~~~~~l~s 162 (271)
. +.....+|++.+.+.+ ++.+..++++
T Consensus 378 i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaS 457 (519)
T KOG0293|consen 378 IRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIAS 457 (519)
T ss_pred eeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEe
Confidence 0 0011123333332221 1225689999
Q ss_pred EeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEec-CCCEEEEEECCCcEEEEEeCC
Q psy13856 163 CSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSL-TGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 163 ~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~v~iw~~~~ 220 (271)
|+.|+.|+||+..++.. +..+.||...|+||+|+| +..++|++++||+|+||.+..
T Consensus 458 GSED~kvyIWhr~sgkl--l~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 458 GSEDSKVYIWHRISGKL--LAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred cCCCceEEEEEccCCce--eEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 99999999999999987 889999999999999999 567899999999999998764
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-22 Score=172.10 Aligned_cols=142 Identities=17% Similarity=0.215 Sum_probs=133.6
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccce
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF 107 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~ 107 (271)
|+..++||||.|.+.+||++ ..++.+|+.. |+++.|+|..+.++|+|.|++|++|.+.
T Consensus 473 ~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RG----vw~V~Fs~~dq~laT~SgD~TvKIW~is------------- 535 (775)
T KOG0319|consen 473 PNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRG----VWCVSFSKNDQLLATCSGDKTVKIWSIS------------- 535 (775)
T ss_pred CCCceEEecccccceeeecccCceEEEEeeCCccc----eEEEEeccccceeEeccCCceEEEEEec-------------
Confidence 58999999999999999999 7889999999 9999999999999999999999999982
Q ss_pred eeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeecc
Q psy13856 108 KLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187 (271)
Q Consensus 108 ~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 187 (271)
.+.++++|.||+..|..+.|-. ++..|+||+.||.+++|++.+.+| ...+.+
T Consensus 536 ----------------------~fSClkT~eGH~~aVlra~F~~----~~~qliS~~adGliKlWnikt~eC--~~tlD~ 587 (775)
T KOG0319|consen 536 ----------------------TFSCLKTFEGHTSAVLRASFIR----NGKQLISAGADGLIKLWNIKTNEC--EMTLDA 587 (775)
T ss_pred ----------------------cceeeeeecCccceeEeeeeee----CCcEEEeccCCCcEEEEeccchhh--hhhhhh
Confidence 3478999999999999999998 599999999999999999999998 889999
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 188 h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
|.+.|++++-+|...++++|+.||.|.+|.=.
T Consensus 588 H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~ 619 (775)
T KOG0319|consen 588 HNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV 619 (775)
T ss_pred ccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence 99999999999999999999999999999733
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-22 Score=147.46 Aligned_cols=187 Identities=12% Similarity=0.109 Sum_probs=144.3
Q ss_pred CCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc
Q psy13856 33 RIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
|++..||+++. ..||+||+ +.++.+|+.. |.++.|..+|+.+++||.||++|+||+ +...|.+.+
T Consensus 50 pdk~~LAaa~~-qhvRlyD~~S~np~Pv~t~e~h~kN----VtaVgF~~dgrWMyTgseDgt~kIWdl---R~~~~qR~~ 121 (311)
T KOG0315|consen 50 PDKKDLAAAGN-QHVRLYDLNSNNPNPVATFEGHTKN----VTAVGFQCDGRWMYTGSEDGTVKIWDL---RSLSCQRNY 121 (311)
T ss_pred CCcchhhhccC-CeeEEEEccCCCCCceeEEeccCCc----eEEEEEeecCeEEEecCCCceEEEEec---cCcccchhc
Confidence 58888999988 99999999 7889999999 999999999999999999999999999 556666655
Q ss_pred ceeeEE----Eeec-cceee----eEEEEeeCCceEEeEEe-cCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcC
Q psy13856 106 YFKLTV----YSTK-LTRIL----ILVRICGGDKWIEETKL-ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSN 175 (271)
Q Consensus 106 ~~~~~~----~~~~-~~~l~----~~v~i~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 175 (271)
.++..+ ..+. ..++. +.|++++-+.-.+.+.+ ......|.++...| ||.+++.+...|.+++|++-
T Consensus 122 ~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~----dgsml~a~nnkG~cyvW~l~ 197 (311)
T KOG0315|consen 122 QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMP----DGSMLAAANNKGNCYVWRLL 197 (311)
T ss_pred cCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeEEEcC----CCcEEEEecCCccEEEEEcc
Confidence 443222 2222 44444 77888322211233333 33456899999999 79999999999999999996
Q ss_pred CCc----eeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 176 DYV----TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 176 ~~~----~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
... ..++..++.|++-+..+.++|++++||++|.|.+++||+.++. ++....+++|
T Consensus 198 ~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~--~kle~~l~gh 257 (311)
T KOG0315|consen 198 NHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF--FKLELVLTGH 257 (311)
T ss_pred CCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc--eeeEEEeecC
Confidence 542 1225567899999999999999999999999999999998754 4555555555
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.6e-22 Score=168.77 Aligned_cols=208 Identities=17% Similarity=0.187 Sum_probs=163.4
Q ss_pred CcceeEEee-ceeEeeccccccceecccCCCCCCCEEEEccCCCeEEeccc--eee--------ecc-c--cccccccce
Q psy13856 3 SKEWLLVSC-DGLLMTLKPTLEIETYTESPLRIGHTLISCDTQAHIGIRST--ISL--------LQG-S--VYLRRESNK 68 (271)
Q Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~--~~~--------~~~-h--~~~~~~~i~ 68 (271)
++++.++.+ .+.+.+.-+.++-.+++.+..||+..+++||.|.+|++||+ +.. +.- | .-....+|.
T Consensus 433 ~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 433 NGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred CCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 345555554 44444545567778888888999999999999999999998 111 111 1 111244589
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeec-cceeeEEE----eeccceee-----eEEEE--eeCCceEEeEE
Q psy13856 69 AGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQP-KYFKLTVY----STKLTRIL-----ILVRI--CGGDKWIEETK 136 (271)
Q Consensus 69 ~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~----~~~~~~l~-----~~v~i--~~~~~~~~~~~ 136 (271)
|+++||||++|+.+--|.++++|-+ .+.+..-. .++...+. +.+++.++ ..|++ .+-+ .|.++
T Consensus 513 ~v~~Spdgk~LaVsLLdnTVkVyfl---DtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG--DCHKS 587 (888)
T KOG0306|consen 513 CVSVSPDGKLLAVSLLDNTVKVYFL---DTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG--DCHKS 587 (888)
T ss_pred EEEEcCCCcEEEEEeccCeEEEEEe---cceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc--hhhhh
Confidence 9999999999999999999999988 44444333 34433333 34466666 88888 5666 78899
Q ss_pred ecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q psy13856 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216 (271)
Q Consensus 137 ~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw 216 (271)
+.+|.+.|.+|.|-| ....|.+||.|+.++-||-.+-+. ...+.+|...|+|++.+|+|.+++++|.|..|++|
T Consensus 588 ~fAHdDSvm~V~F~P----~~~~FFt~gKD~kvKqWDg~kFe~--iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlw 661 (888)
T KOG0306|consen 588 FFAHDDSVMSVQFLP----KTHLFFTCGKDGKVKQWDGEKFEE--IQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLW 661 (888)
T ss_pred hhcccCceeEEEEcc----cceeEEEecCcceEEeechhhhhh--heeeccchheeeeeEEcCCCCeEEeccCCceeEee
Confidence 999999999999999 588999999999999999988776 78899999999999999999999999999999999
Q ss_pred EeCCC
Q psy13856 217 KENTD 221 (271)
Q Consensus 217 ~~~~~ 221 (271)
.....
T Consensus 662 E~tde 666 (888)
T KOG0306|consen 662 ERTDE 666 (888)
T ss_pred eccCc
Confidence 87644
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.4e-23 Score=166.44 Aligned_cols=184 Identities=15% Similarity=0.204 Sum_probs=153.6
Q ss_pred CCCEEEEccCCCeEEeccc------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccce
Q psy13856 34 IGHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF 107 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~ 107 (271)
.+.+|++|+.|+.|+||++ ++++.+|..+ |.+++|+.+|..++|+|.|+.+++||+ ++|++..
T Consensus 226 ~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~----Vrd~~~s~~g~~fLS~sfD~~lKlwDt---ETG~~~~---- 294 (503)
T KOG0282|consen 226 KGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKP----VRDASFNNCGTSFLSASFDRFLKLWDT---ETGQVLS---- 294 (503)
T ss_pred eeeEEEecCCCceEEEEEEecCcceehhhhcchhh----hhhhhccccCCeeeeeecceeeeeecc---ccceEEE----
Confidence 7899999999999999999 8899999999 999999999999999999999999999 5555433
Q ss_pred eeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeecc
Q psy13856 108 KLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187 (271)
Q Consensus 108 ~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 187 (271)
.+. -...++++.|+|. +.+.|++|+.|+.|+.||+++++. ++.+..
T Consensus 295 ----------------------------~f~-~~~~~~cvkf~pd---~~n~fl~G~sd~ki~~wDiRs~kv--vqeYd~ 340 (503)
T KOG0282|consen 295 ----------------------------RFH-LDKVPTCVKFHPD---NQNIFLVGGSDKKIRQWDIRSGKV--VQEYDR 340 (503)
T ss_pred ----------------------------EEe-cCCCceeeecCCC---CCcEEEEecCCCcEEEEeccchHH--HHHHHh
Confidence 332 2356789999996 458999999999999999999986 778889
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhhhh-----hhhhccccccccceeeecccCcc
Q psy13856 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRAI-----KKELNQSLDKWTPIHSVISTNKM 262 (271)
Q Consensus 188 h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 262 (271)
|-++|..+.|-++|..++++++|++++||+.+..-..+.+.....|..+.-. ..-..|+.++...+++.....++
T Consensus 341 hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~ 420 (503)
T KOG0282|consen 341 HLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRL 420 (503)
T ss_pred hhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEeccccccc
Confidence 9999999999999999999999999999999877555555555555444322 45667788888888887655443
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.3e-21 Score=166.19 Aligned_cols=176 Identities=18% Similarity=0.159 Sum_probs=147.7
Q ss_pred CCCCCEEEEccCC-CeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc
Q psy13856 32 LRIGHTLISCDTQ-AHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 32 ~~~g~~l~s~s~d-~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
...|+.||.|+.. |.+-+|++ +-..++|... +.+++++|||+++++|+.|+.|++||. .++-|.-++
T Consensus 316 N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~----i~~l~YSpDgq~iaTG~eDgKVKvWn~---~SgfC~vTF 388 (893)
T KOG0291|consen 316 NSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDR----ITSLAYSPDGQLIATGAEDGKVKVWNT---QSGFCFVTF 388 (893)
T ss_pred cccCCEEEEcCCccceEEEEEeeccceeeeccccccc----eeeEEECCCCcEEEeccCCCcEEEEec---cCceEEEEe
Confidence 3468989988864 79999998 5566889999 999999999999999999999999999 888888776
Q ss_pred -----ceeeEEEeeccceee-----eEEEEeeCCceEEeEEecCC-CcceEEEEEccCCCCCCcEEEEEeCCC-eEEEEE
Q psy13856 106 -----YFKLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENH-SDWVRDVAWAPSWGLSKCMIASCSQDR-KVIIWT 173 (271)
Q Consensus 106 -----~~~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~~~~l~s~~~dg-~i~iwd 173 (271)
.++...++..++.+. |+|+.++-.+++..+++... .....+++..| .|.++.+|+.|. .|.+|+
T Consensus 389 teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~----sGelV~AG~~d~F~IfvWS 464 (893)
T KOG0291|consen 389 TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP----SGELVCAGAQDSFEIFVWS 464 (893)
T ss_pred ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC----CCCEEEeeccceEEEEEEE
Confidence 335555666676666 88998555555777777653 34567888889 699999999886 599999
Q ss_pred cCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 174 SNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 174 ~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
+++++. ...+.+|+++|.+++|+|+|..|+++|.|++|++|++-.
T Consensus 465 ~qTGql--lDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~ 509 (893)
T KOG0291|consen 465 VQTGQL--LDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFS 509 (893)
T ss_pred eecCee--eehhcCCCCcceeeEEccccCeEEeccccceEEEEEeec
Confidence 999987 788999999999999999999999999999999999843
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-21 Score=147.04 Aligned_cols=186 Identities=14% Similarity=0.070 Sum_probs=152.2
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
-..-.....++|++|.+|+.|.+..+|-. +.++.+|++. |++++.+.+.+.+++|+.|.++++||. ++
T Consensus 11 RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGa----vW~~Did~~s~~liTGSAD~t~kLWDv---~t 83 (327)
T KOG0643|consen 11 RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGA----VWCCDIDWDSKHLITGSADQTAKLWDV---ET 83 (327)
T ss_pred cccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCce----EEEEEecCCcceeeeccccceeEEEEc---CC
Confidence 33344445679999999999999999976 8899999999 999999999999999999999999999 88
Q ss_pred Cceeeccceee----EEEeeccceee----------eEEEE---e-eC---CceEEeEEecCCCcceEEEEEccCCCCCC
Q psy13856 99 PACLQPKYFKL----TVYSTKLTRIL----------ILVRI---C-GG---DKWIEETKLENHSDWVRDVAWAPSWGLSK 157 (271)
Q Consensus 99 ~~~~~~~~~~~----~~~~~~~~~l~----------~~v~i---~-~~---~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 157 (271)
++++.....+. .-|+..+++++ +.|.+ . .. ..-++...+..+.+.++.+-|.| -+
T Consensus 84 Gk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~----l~ 159 (327)
T KOG0643|consen 84 GKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP----LG 159 (327)
T ss_pred CcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc----cC
Confidence 88887764433 33444455544 44444 1 11 01145666777889999999999 49
Q ss_pred cEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 158 CMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 158 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
++|++|..||.|.+||.+++... +..-..|...|+.+.+++|..+++++|.|.+-++||..+-
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~-v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl 222 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKEL-VDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL 222 (327)
T ss_pred CEEEEecCCCcEEEEEcccCcee-eechhhhccccccccccCCcceEEecccCccceeeeccce
Confidence 99999999999999999998654 5666789999999999999999999999999999999754
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.3e-23 Score=161.22 Aligned_cols=172 Identities=9% Similarity=0.103 Sum_probs=142.8
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-ce
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-YF 107 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~~ 107 (271)
+...|++||.|.+|++||+ +.++.+|... |..+.|+. .+++++|.|.++.+||........+.+.. ++
T Consensus 246 d~rviisGSSDsTvrvWDv~tge~l~tlihHcea----VLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGH 319 (499)
T KOG0281|consen 246 DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEA----VLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGH 319 (499)
T ss_pred cceEEEecCCCceEEEEeccCCchhhHHhhhcce----eEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhh
Confidence 5668999999999999999 8888999999 99999973 69999999999999998533333333433 33
Q ss_pred eeEEEe--eccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCcee
Q psy13856 108 KLTVYS--TKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTW 180 (271)
Q Consensus 108 ~~~~~~--~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 180 (271)
...+.. .+.++++ .+++++...+.++++++.+|...|.|+.+. ++++++|+.|.+|++||+..+.+
T Consensus 320 rAaVNvVdfd~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQYr------~rlvVSGSSDntIRlwdi~~G~c- 392 (499)
T KOG0281|consen 320 RAAVNVVDFDDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQYR------DRLVVSGSSDNTIRLWDIECGAC- 392 (499)
T ss_pred hhheeeeccccceEEEecCCceEEEEeccceeeehhhhcccccceehhcc------CeEEEecCCCceEEEEeccccHH-
Confidence 333333 3356666 788885555558999999999999999885 58999999999999999999998
Q ss_pred eeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 181 TPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 181 ~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
...+++|++-|.|+.|+ .+.+++|+.||+|++||+..+
T Consensus 393 -LRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aa 430 (499)
T KOG0281|consen 393 -LRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAA 430 (499)
T ss_pred -HHHHhchHHhhhheeec--CceeeeccccceEEEEecccc
Confidence 88899999999999995 568999999999999999865
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-21 Score=167.20 Aligned_cols=151 Identities=15% Similarity=0.159 Sum_probs=125.0
Q ss_pred ecccCCCC-CCCEEEEccCCCeEEeccc------------eeeeccccccccccceEEEEcCCC-CeEEEEeCCCcEEEE
Q psy13856 26 TYTESPLR-IGHTLISCDTQAHIGIRST------------ISLLQGSVYLRRESNKAGALSPKL-NRSATSSFHEAAKHL 91 (271)
Q Consensus 26 ~~~~~~~~-~g~~l~s~s~d~~i~lwd~------------~~~~~~h~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~~~ 91 (271)
+......| ++++|++|+.|++|++||+ +..+.+|... |.+++|+|++ ++|++++.|++|++|
T Consensus 78 V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~----V~~l~f~P~~~~iLaSgs~DgtVrIW 153 (493)
T PTZ00421 78 IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKK----VGIVSFHPSAMNVLASAGADMVVNVW 153 (493)
T ss_pred EEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCc----EEEEEeCcCCCCEEEEEeCCCEEEEE
Confidence 34444455 7889999999999999997 3467889998 9999999975 699999999999999
Q ss_pred EeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEE
Q psy13856 92 GTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII 171 (271)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~i 171 (271)
|+. .+ .....+.+|...|.+++|+| ++.+|++++.|+.|++
T Consensus 154 Dl~---------------------------------tg--~~~~~l~~h~~~V~sla~sp----dG~lLatgs~Dg~IrI 194 (493)
T PTZ00421 154 DVE---------------------------------RG--KAVEVIKCHSDQITSLEWNL----DGSLLCTTSKDKKLNI 194 (493)
T ss_pred ECC---------------------------------CC--eEEEEEcCCCCceEEEEEEC----CCCEEEEecCCCEEEE
Confidence 982 22 45566778999999999999 6999999999999999
Q ss_pred EEcCCCceeeeeeeccCCCC-eEEEEEecCCCEEEEEE----CCCcEEEEEeCCC
Q psy13856 172 WTSNDYVTWTPFIMNTFDDV-VWNVSWSLTGDILTVSC----GDNSVSLWKENTD 221 (271)
Q Consensus 172 wd~~~~~~~~~~~~~~h~~~-v~~v~~~~~g~~l~s~s----~D~~v~iw~~~~~ 221 (271)
||.+++.. ...+.+|.+. +..+.|.+++..+++++ .|+.|++||++..
T Consensus 195 wD~rsg~~--v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~ 247 (493)
T PTZ00421 195 IDPRDGTI--VSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKM 247 (493)
T ss_pred EECCCCcE--EEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCC
Confidence 99998876 6667788764 45788999877777654 4789999999754
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-21 Score=147.92 Aligned_cols=184 Identities=16% Similarity=0.114 Sum_probs=144.4
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
.+.....+|..|++|+.|+++++|++ -...++|.+. |-.++|+| .+..+++++.|.+|++||+ +.
T Consensus 24 ~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~s----vdql~w~~~~~d~~atas~dk~ir~wd~---r~ 96 (313)
T KOG1407|consen 24 HSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDS----VDQLCWDPKHPDLFATASGDKTIRIWDI---RS 96 (313)
T ss_pred eEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcc----hhhheeCCCCCcceEEecCCceEEEEEe---cc
Confidence 34444569999999999999999998 3345788888 88899987 5569999999999999999 55
Q ss_pred Cceeecc----ceeeEEEeeccceee----------------------------------------------eEEEEeeC
Q psy13856 99 PACLQPK----YFKLTVYSTKLTRIL----------------------------------------------ILVRICGG 128 (271)
Q Consensus 99 ~~~~~~~----~~~~~~~~~~~~~l~----------------------------------------------~~v~i~~~ 128 (271)
++|.... ......+++++.+++ |.|.|..-
T Consensus 97 ~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsy 176 (313)
T KOG1407|consen 97 GKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSY 176 (313)
T ss_pred CcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEec
Confidence 5454322 112233444433332 45555222
Q ss_pred CceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEE
Q psy13856 129 DKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC 208 (271)
Q Consensus 129 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s 208 (271)
..++++.+++.|.....||.|+| +|++||+|+.|..+-+||+...-| ...+..+.-+|+.+.|+.+|++||+||
T Consensus 177 psLkpv~si~AH~snCicI~f~p----~GryfA~GsADAlvSLWD~~ELiC--~R~isRldwpVRTlSFS~dg~~lASaS 250 (313)
T KOG1407|consen 177 PSLKPVQSIKAHPSNCICIEFDP----DGRYFATGSADALVSLWDVDELIC--ERCISRLDWPVRTLSFSHDGRMLASAS 250 (313)
T ss_pred cccccccccccCCcceEEEEECC----CCceEeeccccceeeccChhHhhh--heeeccccCceEEEEeccCcceeeccC
Confidence 23467888899999999999999 799999999999999999987666 778888999999999999999999999
Q ss_pred CCCcEEEEEeCCCCc
Q psy13856 209 GDNSVSLWKENTDGA 223 (271)
Q Consensus 209 ~D~~v~iw~~~~~~~ 223 (271)
+|.-|-|=+..++.+
T Consensus 251 EDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 251 EDHFIDIAEVETGDR 265 (313)
T ss_pred ccceEEeEecccCCe
Confidence 999998888887743
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-22 Score=152.11 Aligned_cols=190 Identities=15% Similarity=0.162 Sum_probs=146.5
Q ss_pred CCCCCCCEEEEccCCCeEEeccc-----------------------eeeeccccccccccceEEEEcCCCCeEEEEeCCC
Q psy13856 30 SPLRIGHTLISCDTQAHIGIRST-----------------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHE 86 (271)
Q Consensus 30 ~~~~~g~~l~s~s~d~~i~lwd~-----------------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~ 86 (271)
...+||.++|+||.|..|+|.|+ ++++..|.+. |.++.|+|....|++|+.|+
T Consensus 119 afs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~de----vn~l~FHPre~ILiS~srD~ 194 (430)
T KOG0640|consen 119 AFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDE----VNDLDFHPRETILISGSRDN 194 (430)
T ss_pred eeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCc----ccceeecchhheEEeccCCC
Confidence 34579999999999999999998 7788889888 99999999999999999999
Q ss_pred cEEEEEeecCCCCceeecc--ce--eeEEEeeccceee-----eEEEEeeCCceEEeEE---ecCCCcceEEEEEccCCC
Q psy13856 87 AAKHLGTVQSSSPACLQPK--YF--KLTVYSTKLTRIL-----ILVRICGGDKWIEETK---LENHSDWVRDVAWAPSWG 154 (271)
Q Consensus 87 ~i~~~d~~~~~~~~~~~~~--~~--~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~ 154 (271)
+|++||......++..+.+ .. ....+.+.|.++. ..+++-+-..+++... -.+|.+.|++|.+++
T Consensus 195 tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~--- 271 (430)
T KOG0640|consen 195 TVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS--- 271 (430)
T ss_pred eEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC---
Confidence 9999998421112222222 11 3334455577776 6666622122233322 246899999999999
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCceeeeee-eccCC-CCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 155 LSKCMIASCSQDRKVIIWTSNDYVTWTPFI-MNTFD-DVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 155 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~h~-~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
.+.+.++++.||.|++||--..+| +.. -..|. ..|.+..|..+|+|+++++.|..+++|.+.++ .++.+..+
T Consensus 272 -t~~lYvTaSkDG~IklwDGVS~rC--v~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R~l~~YtG 345 (430)
T KOG0640|consen 272 -TGSLYVTASKDGAIKLWDGVSNRC--VRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---RMLKEYTG 345 (430)
T ss_pred -CccEEEEeccCCcEEeeccccHHH--HHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---ceEEEEec
Confidence 599999999999999999888877 443 35665 47999999999999999999999999999988 56555544
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-22 Score=149.99 Aligned_cols=180 Identities=12% Similarity=0.037 Sum_probs=148.6
Q ss_pred cCCCCCCCEEEEccCCCeEEeccc------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCcee
Q psy13856 29 ESPLRIGHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACL 102 (271)
Q Consensus 29 ~~~~~~g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~ 102 (271)
+....|.++|++|+.+..+|+||+ ...+.+|.+. |..+-|....+.+++++.|++||+||. +++..+
T Consensus 106 ~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~----Ir~v~wc~eD~~iLSSadd~tVRLWD~---rTgt~v 178 (334)
T KOG0278|consen 106 VAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGG----IRTVLWCHEDKCILSSADDKTVRLWDH---RTGTEV 178 (334)
T ss_pred EEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCc----ceeEEEeccCceEEeeccCCceEEEEe---ccCcEE
Confidence 334468889999999999999999 6678899999 999999988888999999999999999 777777
Q ss_pred eccce----eeEEEeeccceee----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEc
Q psy13856 103 QPKYF----KLTVYSTKLTRIL----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTS 174 (271)
Q Consensus 103 ~~~~~----~~~~~~~~~~~l~----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~ 174 (271)
+...+ .....+.+++++. +.|+.++...+..++.++ -...|.+.+.+|+ ...++.|+.|..++.||.
T Consensus 179 ~sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~----k~~fVaGged~~~~kfDy 253 (334)
T KOG0278|consen 179 QSLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPK----KEFFVAGGEDFKVYKFDY 253 (334)
T ss_pred EEEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeecc-CccccccccccCC----CceEEecCcceEEEEEec
Confidence 66644 3344555677766 677775555556666665 3456888999994 799999999999999999
Q ss_pred CCCceeeeee-eccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 175 NDYVTWTPFI-MNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 175 ~~~~~~~~~~-~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
.+++. +.. ..+|.++|.||.|+|+|...++||.||+|+||....++
T Consensus 254 ~TgeE--i~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~ 300 (334)
T KOG0278|consen 254 NTGEE--IGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGK 300 (334)
T ss_pred cCCce--eeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCC
Confidence 99987 444 38999999999999999999999999999999987653
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.2e-21 Score=166.43 Aligned_cols=207 Identities=16% Similarity=0.195 Sum_probs=165.4
Q ss_pred cceeEEee-ceeEeecc----------ccccceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccc
Q psy13856 4 KEWLLVSC-DGLLMTLK----------PTLEIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESN 67 (271)
Q Consensus 4 ~~~~~~~~-~~~~~~~~----------~~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i 67 (271)
.-|.+++- .|.+.-|. ..++..+......|.+.+++||++|-.|++|++ +.++.+|-+- |
T Consensus 21 rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rrclftL~GHlDY----V 96 (1202)
T KOG0292|consen 21 RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLDY----V 96 (1202)
T ss_pred CCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccceehhhhccccce----e
Confidence 44666654 55555432 234455666677789999999999999999999 7788999999 9
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-ceeeE----EEeeccceee-----eEEEE-ee---------
Q psy13856 68 KAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-YFKLT----VYSTKLTRIL-----ILVRI-CG--------- 127 (271)
Q Consensus 68 ~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~~~~~----~~~~~~~~l~-----~~v~i-~~--------- 127 (271)
+.+.|++.--+++|+|.|.+|++|+- .+.+|+... ++..- .|.+....++ .+|++ +.
T Consensus 97 Rt~~FHheyPWIlSASDDQTIrIWNw---qsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~ 173 (1202)
T KOG0292|consen 97 RTVFFHHEYPWILSASDDQTIRIWNW---QSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKA 173 (1202)
T ss_pred EEeeccCCCceEEEccCCCeEEEEec---cCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCC
Confidence 99999998889999999999999998 788888766 33222 2333344444 56665 11
Q ss_pred CC-------------------ceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccC
Q psy13856 128 GD-------------------KWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTF 188 (271)
Q Consensus 128 ~~-------------------~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h 188 (271)
.+ ..-....++||...|+-++|+| .-.+|+||+.|+.|++|.+...+.|++..+.+|
T Consensus 174 pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhp----TlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH 249 (1202)
T KOG0292|consen 174 PGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHP----TLPLIVSGADDRQVKLWRMNETKAWEVDTCRGH 249 (1202)
T ss_pred CCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecC----CcceEEecCCcceeeEEEeccccceeehhhhcc
Confidence 01 1123456789999999999999 478999999999999999999999989999999
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 189 DDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 189 ~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.+.|.++-|+|...++++.|.|++|++||+...
T Consensus 250 ~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 250 YNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 999999999999999999999999999999754
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-22 Score=172.83 Aligned_cols=185 Identities=18% Similarity=0.249 Sum_probs=151.0
Q ss_pred cceecccCCCCCCCEEEEcc--CCCeEEeccc-----------------eeeeccccccccccceEEEEcCCCCeEEEEe
Q psy13856 23 EIETYTESPLRIGHTLISCD--TQAHIGIRST-----------------ISLLQGSVYLRRESNKAGALSPKLNRSATSS 83 (271)
Q Consensus 23 ~~~~~~~~~~~~g~~l~s~s--~d~~i~lwd~-----------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s 83 (271)
+..+|.+...|||..++||+ .|+.+++|+. +.....|.+. |.|+.|+|||++||+||
T Consensus 13 ~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~s----v~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 13 EKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGS----VNCVRFSPDGSYLASGS 88 (942)
T ss_pred CeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCc----eeEEEECCCCCeEeecc
Confidence 34478888889999999999 9999999997 4455678888 99999999999999999
Q ss_pred CCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEE
Q psy13856 84 FHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASC 163 (271)
Q Consensus 84 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~ 163 (271)
.|+.|.+|+.. ....-....-.... .....|+....+.+|...|..++|+| ++.+++++
T Consensus 89 DD~~v~iW~~~---~~~~~~~fgs~g~~--------------~~vE~wk~~~~l~~H~~DV~Dv~Wsp----~~~~lvS~ 147 (942)
T KOG0973|consen 89 DDRLVMIWERA---EIGSGTVFGSTGGA--------------KNVESWKVVSILRGHDSDVLDVNWSP----DDSLLVSV 147 (942)
T ss_pred CcceEEEeeec---ccCCcccccccccc--------------cccceeeEEEEEecCCCccceeccCC----CccEEEEe
Confidence 99999999972 21000000000000 02246789999999999999999999 69999999
Q ss_pred eCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhh
Q psy13856 164 SQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQR 237 (271)
Q Consensus 164 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 237 (271)
+.|++|.+|+.++.+. ...+.+|.+.|-.+.|.|-|+|||+-++|++|+||+..+ |....++.++...+
T Consensus 148 s~DnsViiwn~~tF~~--~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~d---w~i~k~It~pf~~~ 216 (942)
T KOG0973|consen 148 SLDNSVIIWNAKTFEL--LKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSD---WGIEKSITKPFEES 216 (942)
T ss_pred cccceEEEEcccccee--eeeeecccccccceEECCccCeeeeecCCceEEEEEccc---ceeeEeeccchhhC
Confidence 9999999999999865 889999999999999999999999999999999999553 67777776655443
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-21 Score=165.97 Aligned_cols=155 Identities=14% Similarity=0.208 Sum_probs=123.6
Q ss_pred EccCCCeEEeccc-----eeeeccccccccccceEEEEcCC-CCeEEEEeCCCcEEEEEeecCCCCce-eeccceeeEEE
Q psy13856 40 SCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPK-LNRSATSSFHEAAKHLGTVQSSSPAC-LQPKYFKLTVY 112 (271)
Q Consensus 40 s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~-~~~l~s~s~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~ 112 (271)
.|+.++.|++|+. +..+.+|.+. |.+++|+|+ +++|++|+.|++|++|++. ++.. ..
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~gH~~~----V~~lafsP~~~~lLASgS~DgtIrIWDi~---t~~~~~~--------- 112 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLKGHTSS----ILDLQFNPCFSEILASGSEDLTIRVWEIP---HNDESVK--------- 112 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEcCCCCC----EEEEEEcCCCCCEEEEEeCCCeEEEEECC---CCCcccc---------
Confidence 3677899999987 6778999999 999999996 7899999999999999983 2111 10
Q ss_pred eeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCe
Q psy13856 113 STKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVV 192 (271)
Q Consensus 113 ~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v 192 (271)
... .....+.+|...|.+++|+|. ...++++++.|+.|++||++++.. ...+. |...|
T Consensus 113 --------------~i~--~p~~~L~gH~~~V~sVaf~P~---g~~iLaSgS~DgtIrIWDl~tg~~--~~~i~-~~~~V 170 (568)
T PTZ00420 113 --------------EIK--DPQCILKGHKKKISIIDWNPM---NYYIMCSSGFDSFVNIWDIENEKR--AFQIN-MPKKL 170 (568)
T ss_pred --------------ccc--cceEEeecCCCcEEEEEECCC---CCeEEEEEeCCCeEEEEECCCCcE--EEEEe-cCCcE
Confidence 000 234567789999999999995 334568999999999999998774 33343 56789
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccch
Q psy13856 193 WNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSE 235 (271)
Q Consensus 193 ~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 235 (271)
.+++|+|+|.+|++++.|+.|+|||++++ ..+.++.+|.+
T Consensus 171 ~SlswspdG~lLat~s~D~~IrIwD~Rsg---~~i~tl~gH~g 210 (568)
T PTZ00420 171 SSLKWNIKGNLLSGTCVGKHMHIIDPRKQ---EIASSFHIHDG 210 (568)
T ss_pred EEEEECCCCCEEEEEecCCEEEEEECCCC---cEEEEEecccC
Confidence 99999999999999999999999999976 55566666654
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=171.42 Aligned_cols=145 Identities=14% Similarity=0.236 Sum_probs=127.5
Q ss_pred CCCEEEEccCCCeEEeccc--------eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 34 IGHTLISCDTQAHIGIRST--------ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
+.++||+++..|.|.+||+ +..+..|+.. +.++.|++ ..++|++||+||.|++||++ .
T Consensus 99 ~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs----~~~ldfh~tep~iliSGSQDg~vK~~DlR---~------ 165 (839)
T KOG0269|consen 99 YSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERS----ANKLDFHSTEPNILISGSQDGTVKCWDLR---S------ 165 (839)
T ss_pred hhhhheeecCCCcEEEEecCccccchhhhHhhhhccc----eeeeeeccCCccEEEecCCCceEEEEeee---c------
Confidence 5678999999999999999 4578899999 99999998 56799999999999999984 1
Q ss_pred cceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeee
Q psy13856 105 KYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFI 184 (271)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 184 (271)
. ....++.+....|..|+|+|. .+.+|+++...|.+.+||++....+ ...
T Consensus 166 ------------------------~--~S~~t~~~nSESiRDV~fsp~---~~~~F~s~~dsG~lqlWDlRqp~r~-~~k 215 (839)
T KOG0269|consen 166 ------------------------K--KSKSTFRSNSESIRDVKFSPG---YGNKFASIHDSGYLQLWDLRQPDRC-EKK 215 (839)
T ss_pred ------------------------c--cccccccccchhhhceeeccC---CCceEEEecCCceEEEeeccCchhH-HHH
Confidence 1 234455567889999999998 7999999999999999999988754 567
Q ss_pred eccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 185 MNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 185 ~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+.+|.++|.|+.|+|++.+||+|+.|++|+||+..+.
T Consensus 216 ~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~ 252 (839)
T KOG0269|consen 216 LTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDS 252 (839)
T ss_pred hhcccCceEEEeecCCCceeeecCCCccEEEEeccCC
Confidence 8899999999999999999999999999999999754
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=145.34 Aligned_cols=188 Identities=16% Similarity=0.129 Sum_probs=151.1
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
+.......||++.++|+.|.+|++|+. ++++.+|... |.+++.+.|...+++|+.|..+.+||. .+++
T Consensus 20 V~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E----VlD~~~s~Dnskf~s~GgDk~v~vwDV---~TGk 92 (307)
T KOG0316|consen 20 VRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE----VLDAALSSDNSKFASCGGDKAVQVWDV---NTGK 92 (307)
T ss_pred eEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCce----eeeccccccccccccCCCCceEEEEEc---ccCe
Confidence 333445569999999999999999999 8999999999 999999999999999999999999999 8888
Q ss_pred eeecc-ceeeEE----Eeeccceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCe
Q psy13856 101 CLQPK-YFKLTV----YSTKLTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK 168 (271)
Q Consensus 101 ~~~~~-~~~~~~----~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~ 168 (271)
..+.+ .+...+ +.-+...++ ..+++ -....+++++.+....+.|.+|..+. ..|++|+.||+
T Consensus 93 v~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~------heIvaGS~DGt 166 (307)
T KOG0316|consen 93 VDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAE------HEIVAGSVDGT 166 (307)
T ss_pred eeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecc------cEEEeeccCCc
Confidence 87766 332222 222233333 66777 34555688999998899999999875 69999999999
Q ss_pred EEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 169 VIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 169 i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
++.||++.+.. ..-+ ...+|++++|+++++.++.++-|+++++.|-.++ +.++..++|
T Consensus 167 vRtydiR~G~l--~sDy--~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGh 224 (307)
T KOG0316|consen 167 VRTYDIRKGTL--SSDY--FGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGH 224 (307)
T ss_pred EEEEEeeccee--ehhh--cCCcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhccc
Confidence 99999999874 2333 3458999999999999999999999999998877 333444444
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-21 Score=157.23 Aligned_cols=155 Identities=21% Similarity=0.249 Sum_probs=129.7
Q ss_pred ecccCCCCCCC-EEEEccCCCeEEeccc------------eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEE
Q psy13856 26 TYTESPLRIGH-TLISCDTQAHIGIRST------------ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHL 91 (271)
Q Consensus 26 ~~~~~~~~~g~-~l~s~s~d~~i~lwd~------------~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~ 91 (271)
-|..+..+... .|++|+.|++|.+||+ ...+.+|+.. |.+++|++ +...+++++.|+.+.+|
T Consensus 180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~----VeDV~~h~~h~~lF~sv~dd~~L~iw 255 (422)
T KOG0264|consen 180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDV----VEDVAWHPLHEDLFGSVGDDGKLMIW 255 (422)
T ss_pred ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcc----eehhhccccchhhheeecCCCeEEEE
Confidence 44444443333 6999999999999998 5667899999 99999998 45688999999999999
Q ss_pred EeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEE
Q psy13856 92 GTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII 171 (271)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~i 171 (271)
|++ +. .-++.....+|.+.|+|++|+|. ++..||+||.|++|++
T Consensus 256 D~R---~~------------------------------~~~~~~~~~ah~~~vn~~~fnp~---~~~ilAT~S~D~tV~L 299 (422)
T KOG0264|consen 256 DTR---SN------------------------------TSKPSHSVKAHSAEVNCVAFNPF---NEFILATGSADKTVAL 299 (422)
T ss_pred EcC---CC------------------------------CCCCcccccccCCceeEEEeCCC---CCceEEeccCCCcEEE
Confidence 994 11 11445566789999999999998 7889999999999999
Q ss_pred EEcCCCceeeeeeeccCCCCeEEEEEecC-CCEEEEEECCCcEEEEEeCCC
Q psy13856 172 WTSNDYVTWTPFIMNTFDDVVWNVSWSLT-GDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 172 wd~~~~~~~~~~~~~~h~~~v~~v~~~~~-g~~l~s~s~D~~v~iw~~~~~ 221 (271)
||+|+... ....+.+|...|.+|.|+|+ ...||+++.|+.+.+||+..-
T Consensus 300 wDlRnL~~-~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~i 349 (422)
T KOG0264|consen 300 WDLRNLNK-PLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRI 349 (422)
T ss_pred eechhccc-CceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEecccc
Confidence 99998765 37789999999999999997 578999999999999999753
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.4e-20 Score=142.60 Aligned_cols=165 Identities=10% Similarity=0.148 Sum_probs=130.6
Q ss_pred eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc---ceeeEEEeeccceee-----eEEE
Q psy13856 53 ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK---YFKLTVYSTKLTRIL-----ILVR 124 (271)
Q Consensus 53 ~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~l~-----~~v~ 124 (271)
++.+.||... |.+++.+|-+..+++++.|++|++||+ +..+|.-.. ..+...+.+.|-.+| ..|+
T Consensus 93 lRYF~GH~~~----V~sL~~sP~~d~FlS~S~D~tvrLWDl---R~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~~Ik 165 (311)
T KOG1446|consen 93 LRYFPGHKKR----VNSLSVSPKDDTFLSSSLDKTVRLWDL---RVKKCQGLLNLSGRPIAAFDPEGLIFALANGSELIK 165 (311)
T ss_pred EEEcCCCCce----EEEEEecCCCCeEEecccCCeEEeeEe---cCCCCceEEecCCCcceeECCCCcEEEEecCCCeEE
Confidence 7778899999 999999999899999999999999999 555554433 557778888888888 4677
Q ss_pred E-----eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCe---EEEE
Q psy13856 125 I-----CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVV---WNVS 196 (271)
Q Consensus 125 i-----~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v---~~v~ 196 (271)
+ .+.+++.......+-....+.+.|+| ||.+|+.+...+.+++.|.-.+.. ...+..+...- ...+
T Consensus 166 LyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~----dGK~iLlsT~~s~~~~lDAf~G~~--~~tfs~~~~~~~~~~~a~ 239 (311)
T KOG1446|consen 166 LYDLRSFDKGPFTTFSITDNDEAEWTDLEFSP----DGKSILLSTNASFIYLLDAFDGTV--KSTFSGYPNAGNLPLSAT 239 (311)
T ss_pred EEEecccCCCCceeEccCCCCccceeeeEEcC----CCCEEEEEeCCCcEEEEEccCCcE--eeeEeeccCCCCcceeEE
Confidence 7 22333333332234567789999999 799999999999999999999885 55555554322 5788
Q ss_pred EecCCCEEEEEECCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 197 WSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 197 ~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
|.||++++++|+.||+|.+|+++++ +.+..+.+.
T Consensus 240 ftPds~Fvl~gs~dg~i~vw~~~tg---~~v~~~~~~ 273 (311)
T KOG1446|consen 240 FTPDSKFVLSGSDDGTIHVWNLETG---KKVAVLRGP 273 (311)
T ss_pred ECCCCcEEEEecCCCcEEEEEcCCC---cEeeEecCC
Confidence 9999999999999999999999988 666777664
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-22 Score=147.77 Aligned_cols=164 Identities=24% Similarity=0.333 Sum_probs=139.9
Q ss_pred CCCCEEEEccCCCeEEeccc--------eeeeccccccccccceEEEEcC--CCCeEEEEeCCCcEEEEEeecCCCCcee
Q psy13856 33 RIGHTLISCDTQAHIGIRST--------ISLLQGSVYLRRESNKAGALSP--KLNRSATSSFHEAAKHLGTVQSSSPACL 102 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~~~d~~~~~~~~~~ 102 (271)
-.|.+||||+.|++|+|+.. +..|.+|.++ |+.++|.. .|++||+++.||.|.+|.-
T Consensus 21 yygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GP----Vwqv~wahPk~G~iLAScsYDgkVIiWke--------- 87 (299)
T KOG1332|consen 21 YYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGP----VWKVAWAHPKFGTILASCSYDGKVIIWKE--------- 87 (299)
T ss_pred hhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCC----eeEEeecccccCcEeeEeecCceEEEEec---------
Confidence 46889999999999999998 7789999999 99999975 8999999999999988986
Q ss_pred eccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCcee-e
Q psy13856 103 QPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTW-T 181 (271)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~ 181 (271)
.+++|....+...|...|++|+|.|+. -|-.|+.++.||.|.+.+.+....+ .
T Consensus 88 ------------------------~~g~w~k~~e~~~h~~SVNsV~waphe--ygl~LacasSDG~vsvl~~~~~g~w~t 141 (299)
T KOG1332|consen 88 ------------------------ENGRWTKAYEHAAHSASVNSVAWAPHE--YGLLLACASSDGKVSVLTYDSSGGWTT 141 (299)
T ss_pred ------------------------CCCchhhhhhhhhhcccceeecccccc--cceEEEEeeCCCcEEEEEEcCCCCccc
Confidence 345667777788899999999999963 3668899999999999999876322 2
Q ss_pred eeeeccCCCCeEEEEEecC---C-----------CEEEEEECCCcEEEEEeCCCCceeEEEEecccchh
Q psy13856 182 PFIMNTFDDVVWNVSWSLT---G-----------DILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 182 ~~~~~~h~~~v~~v~~~~~---g-----------~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
..+...|.-.|++++|.|- | ..|++|+-|+.|+||+.+.+ .|....++++|..-
T Consensus 142 ~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dw 209 (299)
T KOG1332|consen 142 SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDW 209 (299)
T ss_pred hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchh
Confidence 4567789999999999996 4 45999999999999999866 88888888888643
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.6e-21 Score=165.50 Aligned_cols=198 Identities=16% Similarity=0.159 Sum_probs=160.9
Q ss_pred ccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCcee
Q psy13856 28 TESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACL 102 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~ 102 (271)
..+..|....++++-..|.|.+||. +..+..|.++ |++++|+|++-+++||+.|..|++|+. ++.+|+
T Consensus 14 glsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGp----VRgv~FH~~qplFVSGGDDykIkVWnY---k~rrcl 86 (1202)
T KOG0292|consen 14 GLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGP----VRGVDFHPTQPLFVSGGDDYKIKVWNY---KTRRCL 86 (1202)
T ss_pred ceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCc----cceeeecCCCCeEEecCCccEEEEEec---ccceeh
Confidence 4455677788999999999999999 7888999999 999999999999999999999999999 888887
Q ss_pred ecc-ceee----EEEeeccceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEE
Q psy13856 103 QPK-YFKL----TVYSTKLTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVI 170 (271)
Q Consensus 103 ~~~-~~~~----~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~ 170 (271)
-+. ++-. ..|...-..+. .+|+| +.++ +++..+.||...|.|.+|+| ..++++|+|-|-+||
T Consensus 87 ftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr--~~iavltGHnHYVMcAqFhp----tEDlIVSaSLDQTVR 160 (1202)
T KOG0292|consen 87 FTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR--KCIAVLTGHNHYVMCAQFHP----TEDLIVSASLDQTVR 160 (1202)
T ss_pred hhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCC--ceEEEEecCceEEEeeccCC----ccceEEEecccceEE
Confidence 665 3322 22222222222 88999 5666 89999999999999999999 589999999999999
Q ss_pred EEEcCCC---------------------------ceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCc
Q psy13856 171 IWTSNDY---------------------------VTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGA 223 (271)
Q Consensus 171 iwd~~~~---------------------------~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~ 223 (271)
+||+..- .......+.+|...|+-++|+|.-.++++|++|..|++|..+....
T Consensus 161 VWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa 240 (1202)
T KOG0292|consen 161 VWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA 240 (1202)
T ss_pred EEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc
Confidence 9998531 1122456789999999999999999999999999999999987766
Q ss_pred eeEEEEecccchhhhh
Q psy13856 224 WQCITEMGKTSEQRAI 239 (271)
Q Consensus 224 ~~~~~~~~~~~~~~~~ 239 (271)
|+ +.+..+|-.+++.
T Consensus 241 WE-vDtcrgH~nnVss 255 (1202)
T KOG0292|consen 241 WE-VDTCRGHYNNVSS 255 (1202)
T ss_pred ee-ehhhhcccCCcce
Confidence 64 3566666655543
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=4e-20 Score=169.61 Aligned_cols=176 Identities=12% Similarity=0.054 Sum_probs=139.1
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCceeeccce
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF 107 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~ 107 (271)
++.+|++++.||+|++||+ +..+.+|.+. |++++|+| ++.+|++|+.|++|++||+ .++.++.....
T Consensus 544 ~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~----V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~---~~~~~~~~~~~ 616 (793)
T PLN00181 544 IKSQVASSNFEGVVQVWDVARSQLVTEMKEHEKR----VWSIDYSSADPTLLASGSDDGSVKLWSI---NQGVSIGTIKT 616 (793)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeEEEEecCCCCC----EEEEEEcCCCCCEEEEEcCCCEEEEEEC---CCCcEEEEEec
Confidence 5788999999999999998 6677899999 99999997 7889999999999999999 55555544321
Q ss_pred ----eeEEE-eeccceee-----eEEEEeeCCc-eEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC
Q psy13856 108 ----KLTVY-STKLTRIL-----ILVRICGGDK-WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 108 ----~~~~~-~~~~~~l~-----~~v~i~~~~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 176 (271)
....+ ...+..++ +.|++++... ......+.+|...|.++.|.+ +.+|++++.|+.|++||++.
T Consensus 617 ~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~~-----~~~lvs~s~D~~ikiWd~~~ 691 (793)
T PLN00181 617 KANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFVD-----SSTLVSSSTDNTLKLWDLSM 691 (793)
T ss_pred CCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEeC-----CCEEEEEECCCEEEEEeCCC
Confidence 12222 23366666 7788822211 124567789999999999974 67999999999999999975
Q ss_pred Cc----eeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 177 YV----TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 177 ~~----~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.. ......+.+|...+.+++|+|++.+|++|+.|+.|++|+....
T Consensus 692 ~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 692 SISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 31 1115678899999999999999999999999999999997654
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=7e-20 Score=150.04 Aligned_cols=206 Identities=15% Similarity=0.133 Sum_probs=148.4
Q ss_pred cccceecccCCCCCCCEEEEccCCCeEEeccc------------------------------------------------
Q psy13856 21 TLEIETYTESPLRIGHTLISCDTQAHIGIRST------------------------------------------------ 52 (271)
Q Consensus 21 ~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~------------------------------------------------ 52 (271)
.++-.+|..+..||++.++++|.|.+++|||+
T Consensus 233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~ 312 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSV 312 (603)
T ss_pred CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCCh
Confidence 55567899999999999999999999999998
Q ss_pred eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCcee----------------------------ec
Q psy13856 53 ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACL----------------------------QP 104 (271)
Q Consensus 53 ~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~----------------------------~~ 104 (271)
+..+.+|... |+++..+|++++|++|+.||.|.-|+.-.+...+.. +.
T Consensus 313 ~~~i~GHnK~----ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~ 388 (603)
T KOG0318|consen 313 LKVISGHNKS----ITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRV 388 (603)
T ss_pred hheecccccc----eeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEE
Confidence 4556788888 999999999999999999999999987432221110 00
Q ss_pred c-----c-----------eeeEEEeecc---------------------------------------ceee-----eEEE
Q psy13856 105 K-----Y-----------FKLTVYSTKL---------------------------------------TRIL-----ILVR 124 (271)
Q Consensus 105 ~-----~-----------~~~~~~~~~~---------------------------------------~~l~-----~~v~ 124 (271)
. . .|..+..... ..++ +.++
T Consensus 389 ~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvh 468 (603)
T KOG0318|consen 389 ISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVH 468 (603)
T ss_pred EecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEE
Confidence 0 0 0011111001 0111 3333
Q ss_pred E--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCC
Q psy13856 125 I--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGD 202 (271)
Q Consensus 125 i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~ 202 (271)
+ ...........+..|.++|++|+++| |+.+||+|...+.+.+||..+.+.. ...+.-|...|++++|+|+..
T Consensus 469 vysl~g~~l~ee~~~~~h~a~iT~vaySp----d~~yla~~Da~rkvv~yd~~s~~~~-~~~w~FHtakI~~~aWsP~n~ 543 (603)
T KOG0318|consen 469 VYSLSGDELKEEAKLLEHRAAITDVAYSP----DGAYLAAGDASRKVVLYDVASREVK-TNRWAFHTAKINCVAWSPNNK 543 (603)
T ss_pred EEEecCCcccceeeeecccCCceEEEECC----CCcEEEEeccCCcEEEEEcccCcee-cceeeeeeeeEEEEEeCCCce
Confidence 3 11111122334456999999999999 7999999999999999999887652 445556999999999999999
Q ss_pred EEEEEECCCcEEEEEeCCCCceeEEEEecccchhh
Q psy13856 203 ILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQR 237 (271)
Q Consensus 203 ~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 237 (271)
++|+|+-|-.|.||+++.... .+.-...|....
T Consensus 544 ~vATGSlDt~Viiysv~kP~~--~i~iknAH~~gV 576 (603)
T KOG0318|consen 544 LVATGSLDTNVIIYSVKKPAK--HIIIKNAHLGGV 576 (603)
T ss_pred EEEeccccceEEEEEccChhh--heEeccccccCc
Confidence 999999999999999985532 244444555443
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=9.5e-21 Score=160.91 Aligned_cols=197 Identities=14% Similarity=0.067 Sum_probs=162.3
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC--
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS-- 98 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~-- 98 (271)
.......|.+.++++|...|.+.+||+ +.+.++|.+. |++++.+||++.+++||.|.+|++|+..--..
T Consensus 415 ~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdga----IWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~ 490 (888)
T KOG0306|consen 415 ILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGA----IWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVP 490 (888)
T ss_pred EEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccc----eeeeeecCCCCceEEecCCcEEEEEeEEEEeccC
Confidence 345556688999999999999999999 7788899999 99999999999999999999999998621011
Q ss_pred C---ceee-----cc----ceeeEEEeeccceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcE
Q psy13856 99 P---ACLQ-----PK----YFKLTVYSTKLTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCM 159 (271)
Q Consensus 99 ~---~~~~-----~~----~~~~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~ 159 (271)
+ +.+. +. ..-....++++++++ +++++ .++- +..-++.||.=+|.|+..+| |+.+
T Consensus 491 gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtl--KFflsLYGHkLPV~smDIS~----DSkl 564 (888)
T KOG0306|consen 491 GTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL--KFFLSLYGHKLPVLSMDISP----DSKL 564 (888)
T ss_pred cccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecce--eeeeeecccccceeEEeccC----CcCe
Confidence 1 1111 11 123344566788888 88888 4443 67788999999999999999 7999
Q ss_pred EEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhh
Q psy13856 160 IASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQR 237 (271)
Q Consensus 160 l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 237 (271)
+++||.|+.|++|-+.=+.| .+.+.+|.+.|.+|.|-|....+++++.|+.|+-||- .+++++..+.+|....
T Consensus 565 ivTgSADKnVKiWGLdFGDC--HKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg---~kFe~iq~L~~H~~ev 637 (888)
T KOG0306|consen 565 IVTGSADKNVKIWGLDFGDC--HKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDG---EKFEEIQKLDGHHSEV 637 (888)
T ss_pred EEeccCCCceEEeccccchh--hhhhhcccCceeEEEEcccceeEEEecCcceEEeech---hhhhhheeeccchhee
Confidence 99999999999999999998 7889999999999999999999999999999999984 4567788887776543
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.8e-21 Score=154.89 Aligned_cols=169 Identities=20% Similarity=0.246 Sum_probs=137.5
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCC-CeEEEEeCCCcEEEEEeecCC
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKL-NRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~~~d~~~~~ 97 (271)
-..|....-.||.++|+|+..|.|+++|. +..+++|+.+ +..+.|+|++ +.+++|+.|+.+++||+
T Consensus 69 ~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~ap----v~~~~f~~~d~t~l~s~sDd~v~k~~d~---- 140 (487)
T KOG0310|consen 69 DVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAP----VHVTKFSPQDNTMLVSGSDDKVVKYWDL---- 140 (487)
T ss_pred cceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCc----eeEEEecccCCeEEEecCCCceEEEEEc----
Confidence 34566767789999999999999999998 7788999999 9999999955 57888888888988887
Q ss_pred CCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC
Q psy13856 98 SPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY 177 (271)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 177 (271)
.+. .....+.+|++.|.+.+|+|. .+.+++|||+||.|++||.+..
T Consensus 141 -----------------------------s~a--~v~~~l~~htDYVR~g~~~~~---~~hivvtGsYDg~vrl~DtR~~ 186 (487)
T KOG0310|consen 141 -----------------------------STA--YVQAELSGHTDYVRCGDISPA---NDHIVVTGSYDGKVRLWDTRSL 186 (487)
T ss_pred -----------------------------CCc--EEEEEecCCcceeEeeccccC---CCeEEEecCCCceEEEEEeccC
Confidence 222 335578899999999999997 6789999999999999999987
Q ss_pred ceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhhhh
Q psy13856 178 VTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRAI 239 (271)
Q Consensus 178 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 239 (271)
.. ......|..+|-++.+-|.|..+++++. +.|++||+.+++ +.+..+..|.+.++.
T Consensus 187 ~~--~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~--qll~~~~~H~KtVTc 243 (487)
T KOG0310|consen 187 TS--RVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGG--QLLTSMFNHNKTVTC 243 (487)
T ss_pred Cc--eeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCc--eehhhhhcccceEEE
Confidence 53 3344568889999999999999999985 579999998665 334444445555544
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.7e-21 Score=154.82 Aligned_cols=181 Identities=14% Similarity=0.155 Sum_probs=130.0
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc---eeeeccccccccccceEEEEcCCC-CeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST---ISLLQGSVYLRRESNKAGALSPKL-NRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~---~~~~~~h~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
.+-...+..+|..++|+|.|+.|++||+ ......|.+. .++++.|+|++ +.+++|+.|+.|+.||+ ++++
T Consensus 260 ~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~~~---~~~cvkf~pd~~n~fl~G~sd~ki~~wDi---Rs~k 333 (503)
T KOG0282|consen 260 PVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHLDK---VPTCVKFHPDNQNIFLVGGSDKKIRQWDI---RSGK 333 (503)
T ss_pred hhhhhhccccCCeeeeeecceeeeeeccccceEEEEEecCC---CceeeecCCCCCcEEEEecCCCcEEEEec---cchH
Confidence 3455666789999999999999999999 3333444433 16799999988 78999999999999999 5555
Q ss_pred eeeccce-----eeEEEeeccceee------------------------------------------------eEEEE--
Q psy13856 101 CLQPKYF-----KLTVYSTKLTRIL------------------------------------------------ILVRI-- 125 (271)
Q Consensus 101 ~~~~~~~-----~~~~~~~~~~~l~------------------------------------------------~~v~i-- 125 (271)
.++.... ....|-..+++++ +.+.+
T Consensus 334 vvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs 413 (503)
T KOG0282|consen 334 VVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFS 413 (503)
T ss_pred HHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEe
Confidence 5433311 1111222222222 22222
Q ss_pred -eeCCceEEeEEecCCC--cceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecC-C
Q psy13856 126 -CGGDKWIEETKLENHS--DWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLT-G 201 (271)
Q Consensus 126 -~~~~~~~~~~~~~~h~--~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~-g 201 (271)
...-+......+++|. +.-..+.|+| ||.+|++|..||.+.+||.++... ...+..|.+++..+.|+|. .
T Consensus 414 ~~~~~r~nkkK~feGh~vaGys~~v~fSp----DG~~l~SGdsdG~v~~wdwkt~kl--~~~lkah~~~ci~v~wHP~e~ 487 (503)
T KOG0282|consen 414 TVPPFRLNKKKRFEGHSVAGYSCQVDFSP----DGRTLCSGDSDGKVNFWDWKTTKL--VSKLKAHDQPCIGVDWHPVEP 487 (503)
T ss_pred cccccccCHhhhhcceeccCceeeEEEcC----CCCeEEeecCCccEEEeechhhhh--hhccccCCcceEEEEecCCCc
Confidence 0000112234456664 3456788999 899999999999999999999776 7788999999999999996 5
Q ss_pred CEEEEEECCCcEEEEE
Q psy13856 202 DILTVSCGDNSVSLWK 217 (271)
Q Consensus 202 ~~l~s~s~D~~v~iw~ 217 (271)
..+|+++.||.|++|+
T Consensus 488 Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 488 SKVATCGWDGLIKIWD 503 (503)
T ss_pred ceeEecccCceeEecC
Confidence 7899999999999996
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.1e-19 Score=157.25 Aligned_cols=150 Identities=9% Similarity=0.049 Sum_probs=118.0
Q ss_pred ecccCCCCC-CCEEEEccCCCeEEeccce-------------eeeccccccccccceEEEEcCCCCe-EEEEeCCCcEEE
Q psy13856 26 TYTESPLRI-GHTLISCDTQAHIGIRSTI-------------SLLQGSVYLRRESNKAGALSPKLNR-SATSSFHEAAKH 90 (271)
Q Consensus 26 ~~~~~~~~~-g~~l~s~s~d~~i~lwd~~-------------~~~~~h~~~~~~~i~~~~~s~~~~~-l~s~s~d~~i~~ 90 (271)
+......|+ +.+|++|+.|++|++||+. ..+.+|... |.+++|+|++.. |++++.|++|++
T Consensus 77 V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~----V~sVaf~P~g~~iLaSgS~DgtIrI 152 (568)
T PTZ00420 77 ILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKK----ISIIDWNPMNYYIMCSSGFDSFVNI 152 (568)
T ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCc----EEEEEECCCCCeEEEEEeCCCeEEE
Confidence 344444454 7899999999999999981 246789888 999999998875 579999999999
Q ss_pred EEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEE
Q psy13856 91 LGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVI 170 (271)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~ 170 (271)
||+ .++ .....+. |...|.+++|+| +|.+|++++.|+.|+
T Consensus 153 WDl---~tg--------------------------------~~~~~i~-~~~~V~Slswsp----dG~lLat~s~D~~Ir 192 (568)
T PTZ00420 153 WDI---ENE--------------------------------KRAFQIN-MPKKLSSLKWNI----KGNLLSGTCVGKHMH 192 (568)
T ss_pred EEC---CCC--------------------------------cEEEEEe-cCCcEEEEEECC----CCCEEEEEecCCEEE
Confidence 998 222 1222333 557899999999 699999999999999
Q ss_pred EEEcCCCceeeeeeeccCCCCeEE-----EEEecCCCEEEEEECCC----cEEEEEeCCC
Q psy13856 171 IWTSNDYVTWTPFIMNTFDDVVWN-----VSWSLTGDILTVSCGDN----SVSLWKENTD 221 (271)
Q Consensus 171 iwd~~~~~~~~~~~~~~h~~~v~~-----v~~~~~g~~l~s~s~D~----~v~iw~~~~~ 221 (271)
+||++++.. ...+.+|.+.+.. ..|++++.+|++++.|+ +|+|||++..
T Consensus 193 IwD~Rsg~~--i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~ 250 (568)
T PTZ00420 193 IIDPRKQEI--ASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNT 250 (568)
T ss_pred EEECCCCcE--EEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCC
Confidence 999999876 6678888875433 34558889999988774 7999999853
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.1e-20 Score=137.07 Aligned_cols=193 Identities=11% Similarity=0.071 Sum_probs=145.8
Q ss_pred cceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCC
Q psy13856 23 EIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 23 ~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
.-|+.......|...+++|+.|..+.+||+ ++.+.+|.+. |+.++|+.+...+++|+.|.++++||-+. +
T Consensus 59 G~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aq----VNtV~fNeesSVv~SgsfD~s~r~wDCRS-~ 133 (307)
T KOG0316|consen 59 GHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQ----VNTVRFNEESSVVASGSFDSSVRLWDCRS-R 133 (307)
T ss_pred CceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccce----eeEEEecCcceEEEeccccceeEEEEccc-C
Confidence 345555555668889999999999999999 8889999999 99999999999999999999999999853 3
Q ss_pred CCceeecc-ceeeEEEeec--cceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCC
Q psy13856 98 SPACLQPK-YFKLTVYSTK--LTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDR 167 (271)
Q Consensus 98 ~~~~~~~~-~~~~~~~~~~--~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg 167 (271)
..+.++.+ .....+.+.+ ...++ ++++. ...+ +..... -..+|++++|++ |++..+.++.|+
T Consensus 134 s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G--~l~sDy--~g~pit~vs~s~----d~nc~La~~l~s 205 (307)
T KOG0316|consen 134 SFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKG--TLSSDY--FGHPITSVSFSK----DGNCSLASSLDS 205 (307)
T ss_pred CCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecc--eeehhh--cCCcceeEEecC----CCCEEEEeeccc
Confidence 34444444 3333333333 33333 55555 3333 222222 246899999999 799999999999
Q ss_pred eEEEEEcCCCceeeeeeeccCCCCeEE--EEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 168 KVIIWTSNDYVTWTPFIMNTFDDVVWN--VSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 168 ~i~iwd~~~~~~~~~~~~~~h~~~v~~--v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
++++.|..+++. ...+.+|.+.-+. .+++....++++|++||.|++||+-.. ..+..+..+
T Consensus 206 tlrLlDk~tGkl--L~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~---~~~sk~~~~ 268 (307)
T KOG0316|consen 206 TLRLLDKETGKL--LKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDE---TQISKLSVV 268 (307)
T ss_pred eeeecccchhHH--HHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccc---eeeeeeccC
Confidence 999999999987 7788899876554 456666789999999999999999866 444444443
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-20 Score=145.06 Aligned_cols=188 Identities=18% Similarity=0.219 Sum_probs=140.8
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc------------e----eeeccccccccccceEEEEcC-CCCeEEEEeCCCc
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST------------I----SLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEA 87 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~------------~----~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~ 87 (271)
......+ ..|+++++|+.||.|.+||+ . ..-+.|.....+.|.++.|-| |.-.+.++|.|.+
T Consensus 47 NsL~id~-tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDht 125 (397)
T KOG4283|consen 47 NSLQIDL-TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHT 125 (397)
T ss_pred ceeeecc-ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccce
Confidence 3344444 36899999999999999998 0 012334444444499999999 5558899999999
Q ss_pred EEEEEeecCCCCceeeccceeeEEEeec-------cceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCC
Q psy13856 88 AKHLGTVQSSSPACLQPKYFKLTVYSTK-------LTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSW 153 (271)
Q Consensus 88 i~~~d~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 153 (271)
+++||. .+.+....+..+..+++.. --+++ ..|++ ...+ .+.+.+.||.+.|.+|.|+|.
T Consensus 126 lKVWDt---nTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SG--s~sH~LsGHr~~vlaV~Wsp~- 199 (397)
T KOG4283|consen 126 LKVWDT---NTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASG--SFSHTLSGHRDGVLAVEWSPS- 199 (397)
T ss_pred EEEeec---ccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCC--cceeeeccccCceEEEEeccC-
Confidence 999999 7766666555555554433 12233 45666 5566 678899999999999999996
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCC-ceee------------eeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 154 GLSKCMIASCSQDRKVIIWTSNDY-VTWT------------PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 154 ~~~~~~l~s~~~dg~i~iwd~~~~-~~~~------------~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
..-.|++|+.||.|++||++.. .++. .+.-..|.+.|+.++|..++.++++++.|..+++|+...
T Consensus 200 --~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 200 --SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred --ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeeccc
Confidence 4567899999999999999865 2210 111235778899999999999999999999999999876
Q ss_pred C
Q psy13856 221 D 221 (271)
Q Consensus 221 ~ 221 (271)
+
T Consensus 278 G 278 (397)
T KOG4283|consen 278 G 278 (397)
T ss_pred C
Confidence 5
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-19 Score=143.94 Aligned_cols=184 Identities=20% Similarity=0.240 Sum_probs=143.6
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
.+......+++++|++++.||.|++|+. ...+..|... +..+.|+|+++.+++++.|+.+++|+. ..+
T Consensus 11 ~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~~~~i~i~~~---~~~ 83 (289)
T cd00200 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP----VRDVAASADGTYLASGSSDKTIRLWDL---ETG 83 (289)
T ss_pred CEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcc----eeEEEECCCCCEEEEEcCCCeEEEEEc---Ccc
Confidence 3444445568999999999999999998 4667788888 889999999999999999999999998 433
Q ss_pred ceeecc-c----eeeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeE
Q psy13856 100 ACLQPK-Y----FKLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 169 (271)
Q Consensus 100 ~~~~~~-~----~~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i 169 (271)
+..... . .....+...+..++ +.+.+.+....+....+..|...+.++.|+| ++.++++++.|+.+
T Consensus 84 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~~~~i 159 (289)
T cd00200 84 ECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP----DGTFVASSSQDGTI 159 (289)
T ss_pred cceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcC----cCCEEEEEcCCCcE
Confidence 333222 1 12233333345555 5666622222266777788999999999999 58888888889999
Q ss_pred EEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 170 IIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
++||.+..+. ...+..|...+.+++|+|++..+++++.|+.|++||++..
T Consensus 160 ~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~ 209 (289)
T cd00200 160 KLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG 209 (289)
T ss_pred EEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC
Confidence 9999987765 5667788889999999999999999999999999999864
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=7e-20 Score=143.89 Aligned_cols=171 Identities=15% Similarity=0.150 Sum_probs=143.8
Q ss_pred eeEEeeceeEeeccccccceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEE
Q psy13856 6 WLLVSCDGLLMTLKPTLEIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSA 80 (271)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~ 80 (271)
.+..+-|-++.++... .-+.|..+..|+.++++||+.|..-.+|+. ...+.+|.+. |.++.|+.+|.+||
T Consensus 48 ~~~~~mDdS~~tF~~H-~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDS----Vt~~~FshdgtlLA 122 (399)
T KOG0296|consen 48 ALEVDMDDSLVTFDKH-TDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDS----VTCCSFSHDGTLLA 122 (399)
T ss_pred Hhhcccccceeehhhc-CCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCc----eEEEEEccCceEEE
Confidence 3444446677777532 456777777789999999999999999999 7888999999 99999999999999
Q ss_pred EEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEE
Q psy13856 81 TSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMI 160 (271)
Q Consensus 81 s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l 160 (271)
||..+|.|++|.. .++. ....+..--+.+.=+.|+| .+..|
T Consensus 123 TGdmsG~v~v~~~---stg~--------------------------------~~~~~~~e~~dieWl~WHp----~a~il 163 (399)
T KOG0296|consen 123 TGDMSGKVLVFKV---STGG--------------------------------EQWKLDQEVEDIEWLKWHP----RAHIL 163 (399)
T ss_pred ecCCCccEEEEEc---ccCc--------------------------------eEEEeecccCceEEEEecc----cccEE
Confidence 9999999999998 3222 2223333445677799999 48999
Q ss_pred EEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 161 ASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 161 ~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
+.|+.||.+.+|.+.+... .+.+.+|..++++=.|.|+|+.++++..||+|++|++.++.
T Consensus 164 lAG~~DGsvWmw~ip~~~~--~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 164 LAGSTDGSVWMWQIPSQAL--CKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred EeecCCCcEEEEECCCcce--eeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc
Confidence 9999999999999988644 78899999999999999999999999999999999999983
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.2e-20 Score=140.20 Aligned_cols=203 Identities=15% Similarity=0.186 Sum_probs=156.2
Q ss_pred cceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCC-CeEEEEeCCCcEEEEEeecC
Q psy13856 23 EIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKL-NRSATSSFHEAAKHLGTVQS 96 (271)
Q Consensus 23 ~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~~~d~~~~ 96 (271)
.-.+......+|+..|++++.|.+++.||. +..+++|... |.++.-+.-| .++.+++.|+++++||.
T Consensus 90 sgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~----vNs~~p~rrg~~lv~SgsdD~t~kl~D~--- 162 (338)
T KOG0265|consen 90 SGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSF----VNSLDPSRRGPQLVCSGSDDGTLKLWDI--- 162 (338)
T ss_pred cceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccce----eeecCccccCCeEEEecCCCceEEEEee---
Confidence 344555566789999999999999999999 7778899998 8888755433 47889999999999999
Q ss_pred CCCceeecc--ceeeEE--Eeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCC
Q psy13856 97 SSPACLQPK--YFKLTV--YSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDR 167 (271)
Q Consensus 97 ~~~~~~~~~--~~~~~~--~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg 167 (271)
++..++++. .+.... |...+.... +.|++++..+-.....+.||.+.|+.+..+| +|.++.+-+.|.
T Consensus 163 R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~----~gs~llsnsMd~ 238 (338)
T KOG0265|consen 163 RKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSR----YGSFLLSNSMDN 238 (338)
T ss_pred cccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEecc----CCCccccccccc
Confidence 666666665 443332 333333333 6777743333367889999999999999999 699999999999
Q ss_pred eEEEEEcCCCc--eeeeeeeccCC----CCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhhhh
Q psy13856 168 KVIIWTSNDYV--TWTPFIMNTFD----DVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRAI 239 (271)
Q Consensus 168 ~i~iwd~~~~~--~~~~~~~~~h~----~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 239 (271)
++++||++.-. ..++..+.+|. --....+|+|+++.+.+|+.|..+++||..+. ..++.+.+|.+....
T Consensus 239 tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~ 313 (338)
T KOG0265|consen 239 TVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNE 313 (338)
T ss_pred eEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccc---cEEEEcCCcceeEEE
Confidence 99999998532 11155565553 34567899999999999999999999998876 678888888776543
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=157.91 Aligned_cols=191 Identities=14% Similarity=0.162 Sum_probs=149.6
Q ss_pred CCCCEEEEccCCCeEEeccc-----------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC--
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP-- 99 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~-- 99 (271)
|++++|.|||.||.|++|+. +..++.|.++ |.+++..-+++.|+++|.|.+|++|+. +..
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDW----VNDiiL~~~~~tlIS~SsDtTVK~W~~---~~~~~ 107 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDW----VNDIILCGNGKTLISASSDTTVKVWNA---HKDNT 107 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhH----HhhHHhhcCCCceEEecCCceEEEeec---ccCcc
Confidence 67889999999999999998 5567899999 999999999999999999999999998 443
Q ss_pred ceeecc----ce-eeEEE-eeccceee-----eEEEE--eeCCc--------eEEeEEec-CCCcceEEEEEccCCCCCC
Q psy13856 100 ACLQPK----YF-KLTVY-STKLTRIL-----ILVRI--CGGDK--------WIEETKLE-NHSDWVRDVAWAPSWGLSK 157 (271)
Q Consensus 100 ~~~~~~----~~-~~~~~-~~~~~~l~-----~~v~i--~~~~~--------~~~~~~~~-~h~~~v~~v~~~p~~~~~~ 157 (271)
-|..+. .| ..... ......++ +.|.+ .+.+. ......+. |+...|++++.++ .+
T Consensus 108 ~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~----t~ 183 (735)
T KOG0308|consen 108 FCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ----TG 183 (735)
T ss_pred hhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC----cc
Confidence 344333 22 22222 12223333 56666 12110 01223333 7889999999999 48
Q ss_pred cEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhh
Q psy13856 158 CMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQR 237 (271)
Q Consensus 158 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 237 (271)
..|++|+..+.+++||.++... ...+.+|+.-|.++-.++||..++++|.||+|++||+.-. .|+.++..|.+.+
T Consensus 184 t~ivsGgtek~lr~wDprt~~k--imkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~V 258 (735)
T KOG0308|consen 184 TIIVSGGTEKDLRLWDPRTCKK--IMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGV 258 (735)
T ss_pred eEEEecCcccceEEeccccccc--eeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCce
Confidence 9999999999999999999876 6778899999999999999999999999999999999866 7888888887764
Q ss_pred hh
Q psy13856 238 AI 239 (271)
Q Consensus 238 ~~ 239 (271)
-+
T Consensus 259 Wa 260 (735)
T KOG0308|consen 259 WA 260 (735)
T ss_pred EE
Confidence 43
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=142.14 Aligned_cols=172 Identities=13% Similarity=0.112 Sum_probs=130.4
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccc-
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKY- 106 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~- 106 (271)
|-+..|+.|+.||.+-+|.+ .+.+.+|... +++-.|.|+|++++++..|++|++|+. ++++.+....
T Consensus 158 p~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~----ct~G~f~pdGKr~~tgy~dgti~~Wn~---ktg~p~~~~~~ 230 (399)
T KOG0296|consen 158 PRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSP----CTCGEFIPDGKRILTGYDDGTIIVWNP---KTGQPLHKITQ 230 (399)
T ss_pred ccccEEEeecCCCcEEEEECCCcceeeEecCCCCC----cccccccCCCceEEEEecCceEEEEec---CCCceeEEecc
Confidence 56777888888888888877 6778899999 999999999999999999999999998 5544432211
Q ss_pred -----ee--------eEEEeec------------cce---------------------------------ee-----eEE
Q psy13856 107 -----FK--------LTVYSTK------------LTR---------------------------------IL-----ILV 123 (271)
Q Consensus 107 -----~~--------~~~~~~~------------~~~---------------------------------l~-----~~v 123 (271)
.+ ..+.... ++. .| ++|
T Consensus 231 ~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i 310 (399)
T KOG0296|consen 231 AEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTI 310 (399)
T ss_pred cccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceE
Confidence 00 0000000 000 00 444
Q ss_pred EEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCE
Q psy13856 124 RICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDI 203 (271)
Q Consensus 124 ~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~ 203 (271)
.|.+... ..++..-.|+..|..+.|-+ ..+|++++.+|.|+.||.|++.. ...+.+|...|.+++++|++++
T Consensus 311 ~iyD~a~-~~~R~~c~he~~V~~l~w~~-----t~~l~t~c~~g~v~~wDaRtG~l--~~~y~GH~~~Il~f~ls~~~~~ 382 (399)
T KOG0296|consen 311 AIYDLAA-STLRHICEHEDGVTKLKWLN-----TDYLLTACANGKVRQWDARTGQL--KFTYTGHQMGILDFALSPQKRL 382 (399)
T ss_pred EEEeccc-chhheeccCCCceEEEEEcC-----cchheeeccCceEEeeeccccce--EEEEecCchheeEEEEcCCCcE
Confidence 4422221 22334445889999999987 47999999999999999999997 8899999999999999999999
Q ss_pred EEEEECCCcEEEEEeC
Q psy13856 204 LTVSCGDNSVSLWKEN 219 (271)
Q Consensus 204 l~s~s~D~~v~iw~~~ 219 (271)
++++|.|++.++|+..
T Consensus 383 vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 383 VVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEecCCCeEEEEecC
Confidence 9999999999999864
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-19 Score=144.64 Aligned_cols=181 Identities=15% Similarity=0.143 Sum_probs=141.3
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccc--
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKY-- 106 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~-- 106 (271)
....+++|+.|..+.++|. +.+++||... |+.+.|+|+...+++++.|..|++|...........+...
T Consensus 230 s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kk----i~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~ 305 (506)
T KOG0289|consen 230 SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKK----ITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEP 305 (506)
T ss_pred CCCcceecCCCCceEEEecchhhhhhhccCcceE----EEEEEeccchhheeecCCcceEEeeccccccCcccccccccc
Confidence 3567999999999999998 8899999999 9999999999999999999999999984333333333221
Q ss_pred eeeEEEeeccceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce
Q psy13856 107 FKLTVYSTKLTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT 179 (271)
Q Consensus 107 ~~~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 179 (271)
+......+.+.+|. +.... ..++.......-++..-.+++.+|+| ||.+|.+|..|+.++|||+.....
T Consensus 306 V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHp----DgLifgtgt~d~~vkiwdlks~~~ 381 (506)
T KOG0289|consen 306 VTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHP----DGLIFGTGTPDGVVKIWDLKSQTN 381 (506)
T ss_pred ceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcC----CceEEeccCCCceEEEEEcCCccc
Confidence 22333334466766 45544 34442222222222334588999999 899999999999999999998875
Q ss_pred eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCce
Q psy13856 180 WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAW 224 (271)
Q Consensus 180 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~ 224 (271)
...+.+|+++|..++|+.+|-+|+++++|+.|++||++....+
T Consensus 382 --~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~ 424 (506)
T KOG0289|consen 382 --VAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNF 424 (506)
T ss_pred --cccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhccc
Confidence 7889999999999999999999999999999999999866433
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.4e-20 Score=146.33 Aligned_cols=142 Identities=16% Similarity=0.180 Sum_probs=127.7
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecccee
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFK 108 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~ 108 (271)
--.++++++.|+.|+.||+ ++.+.+|-.. |++++.+|.-..|++|+.|.++|+||++
T Consensus 204 rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~----V~~L~lhPTldvl~t~grDst~RvWDiR-------------- 265 (460)
T KOG0285|consen 204 RHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSG----VYCLDLHPTLDVLVTGGRDSTIRVWDIR-------------- 265 (460)
T ss_pred cCceEEEecCCCeeEEEechhhhhHHHhccccce----eEEEeccccceeEEecCCcceEEEeeec--------------
Confidence 3458999999999999999 7888999999 9999999999999999999999999983
Q ss_pred eEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccC
Q psy13856 109 LTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTF 188 (271)
Q Consensus 109 ~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h 188 (271)
.. ..+..+.||..+|.+|.+.|. ...+++|+.|++|++||++.++. ...+..|
T Consensus 266 -------------------tr--~~V~~l~GH~~~V~~V~~~~~----dpqvit~S~D~tvrlWDl~agkt--~~tlt~h 318 (460)
T KOG0285|consen 266 -------------------TR--ASVHVLSGHTNPVASVMCQPT----DPQVITGSHDSTVRLWDLRAGKT--MITLTHH 318 (460)
T ss_pred -------------------cc--ceEEEecCCCCcceeEEeecC----CCceEEecCCceEEEeeeccCce--eEeeecc
Confidence 23 567888999999999999984 66789999999999999999986 7778889
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 189 DDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 189 ~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
...|.+++.+|....+|+++.|+ ++-|++..+
T Consensus 319 kksvral~lhP~e~~fASas~dn-ik~w~~p~g 350 (460)
T KOG0285|consen 319 KKSVRALCLHPKENLFASASPDN-IKQWKLPEG 350 (460)
T ss_pred cceeeEEecCCchhhhhccCCcc-ceeccCCcc
Confidence 99999999999999999999885 899998755
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-19 Score=156.29 Aligned_cols=183 Identities=14% Similarity=0.126 Sum_probs=155.4
Q ss_pred CCEEEEccCCCeEEeccc-----eee-eccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-ce
Q psy13856 35 GHTLISCDTQAHIGIRST-----ISL-LQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-YF 107 (271)
Q Consensus 35 g~~l~s~s~d~~i~lwd~-----~~~-~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~~ 107 (271)
+.++++++.|++|++|+. +.. +.+|.+. |++++|..-+.++++|+.|.++++||. .++.|.... .+
T Consensus 218 ~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~----V~~l~~~~~~~~lvsgS~D~t~rvWd~---~sg~C~~~l~gh 290 (537)
T KOG0274|consen 218 DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGG----VWGLAFPSGGDKLVSGSTDKTERVWDC---STGECTHSLQGH 290 (537)
T ss_pred cCeEEecCCCceeEEeecccceEEEeeccCCCCC----ceeEEEecCCCEEEEEecCCcEEeEec---CCCcEEEEecCC
Confidence 667999999999999998 555 8999999 999999987889999999999999998 999999888 45
Q ss_pred eeEEEeec--cceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc
Q psy13856 108 KLTVYSTK--LTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV 178 (271)
Q Consensus 108 ~~~~~~~~--~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 178 (271)
...+...+ ...+. .+|++ ..++ .++..+.+|.++|.++..+ +.++++|+.|++|++||..+.+
T Consensus 291 ~stv~~~~~~~~~~~sgs~D~tVkVW~v~n~--~~l~l~~~h~~~V~~v~~~------~~~lvsgs~d~~v~VW~~~~~~ 362 (537)
T KOG0274|consen 291 TSSVRCLTIDPFLLVSGSRDNTVKVWDVTNG--ACLNLLRGHTGPVNCVQLD------EPLLVSGSYDGTVKVWDPRTGK 362 (537)
T ss_pred CceEEEEEccCceEeeccCCceEEEEeccCc--ceEEEeccccccEEEEEec------CCEEEEEecCceEEEEEhhhce
Confidence 55444444 33333 78888 4455 7888888999999999996 4799999999999999999988
Q ss_pred eeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhh
Q psy13856 179 TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQR 237 (271)
Q Consensus 179 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 237 (271)
+ +..+.+|..+|+++.+.+. ..+++|+.|++|++||+++.. +|+..+.+|..-+
T Consensus 363 c--l~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v 416 (537)
T KOG0274|consen 363 C--LKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLV 416 (537)
T ss_pred e--eeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCcccc
Confidence 8 8899999999999988765 899999999999999998642 6777787776665
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.9e-19 Score=142.20 Aligned_cols=220 Identities=17% Similarity=0.191 Sum_probs=136.8
Q ss_pred cceeEEee-ceeEeeccc-cccceecc-----------cCCCCCCCEEEEccCCCeEEeccc---------eeeeccccc
Q psy13856 4 KEWLLVSC-DGLLMTLKP-TLEIETYT-----------ESPLRIGHTLISCDTQAHIGIRST---------ISLLQGSVY 61 (271)
Q Consensus 4 ~~~~~~~~-~~~~~~~~~-~~~~~~~~-----------~~~~~~g~~l~s~s~d~~i~lwd~---------~~~~~~h~~ 61 (271)
.+|.+..| ||....+.. ......+. ..+.+....++++|.|.++++|.. ++..+||..
T Consensus 115 ~~~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~ 194 (423)
T KOG0313|consen 115 SKWILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKR 194 (423)
T ss_pred CceEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhccccc
Confidence 57888877 777766532 22211111 111123347999999999999988 444569999
Q ss_pred cccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCC
Q psy13856 62 LRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHS 141 (271)
Q Consensus 62 ~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~ 141 (271)
. |-+++..++|.++++||.|..+++|+... .....++.... . +-...-+-...+.-.++..+.||.
T Consensus 195 ~----V~sVsv~~sgtr~~SgS~D~~lkiWs~~~-~~~~~~E~~s~-------~--rrk~~~~~~~~~~r~P~vtl~GHt 260 (423)
T KOG0313|consen 195 S----VDSVSVDSSGTRFCSGSWDTMLKIWSVET-DEEDELESSSN-------R--RRKKQKREKEGGTRTPLVTLEGHT 260 (423)
T ss_pred c----eeEEEecCCCCeEEeecccceeeecccCC-Cccccccccch-------h--hhhhhhhhhcccccCceEEecccc
Confidence 9 99999999999999999999999999311 11111110000 0 000000000000113444555555
Q ss_pred cceEEEEEccCC------------------------------------CCCCcEEEEEeCCCeEEEEEcCCCce-eeeee
Q psy13856 142 DWVRDVAWAPSW------------------------------------GLSKCMIASCSQDRKVIIWTSNDYVT-WTPFI 184 (271)
Q Consensus 142 ~~v~~v~~~p~~------------------------------------~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~ 184 (271)
.+|.+|.|++.. .+...+|++|+.|..+++||.+++.. .....
T Consensus 261 ~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s 340 (423)
T KOG0313|consen 261 EPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQS 340 (423)
T ss_pred cceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEe
Confidence 555555554410 00345566666666666666655431 23556
Q ss_pred eccCCCCeEEEEEecCC-CEEEEEECCCcEEEEEeCCCCceeEEEEecccchhhhh
Q psy13856 185 MNTFDDVVWNVSWSLTG-DILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRAI 239 (271)
Q Consensus 185 ~~~h~~~v~~v~~~~~g-~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 239 (271)
+.+|.+.|.++.|+|.. .+|++++.|+++++||+++. +.+++.+.+|......
T Consensus 341 ~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~--k~plydI~~h~DKvl~ 394 (423)
T KOG0313|consen 341 LIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST--KAPLYDIAGHNDKVLS 394 (423)
T ss_pred eecchhhhhheecCCCCceEEEEEecCCeEEEEEeccC--CCcceeeccCCceEEE
Confidence 88999999999999964 56889999999999999976 3588888888655443
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-19 Score=160.09 Aligned_cols=193 Identities=21% Similarity=0.217 Sum_probs=153.3
Q ss_pred cceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCC
Q psy13856 23 EIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 23 ~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
+..+......||+.+||++|.|++|.+|+. +..+++|... |..+.|.|-|++||+=+.|++|++|++.+..
T Consensus 129 ~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~----VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~ 204 (942)
T KOG0973|consen 129 DSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSL----VKGVSWDPIGKYFASQSDDRTLKVWRTSDWG 204 (942)
T ss_pred CCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccccc----ccceEECCccCeeeeecCCceEEEEEcccce
Confidence 344455555569999999999999999998 8889999999 9999999999999999999999999973211
Q ss_pred CCcee--------eccceeeEEEeeccceee---------eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCC----
Q psy13856 98 SPACL--------QPKYFKLTVYSTKLTRIL---------ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLS---- 156 (271)
Q Consensus 98 ~~~~~--------~~~~~~~~~~~~~~~~l~---------~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~---- 156 (271)
..+.+ ...++...-|+++|++|+ ..+.|.+.+.|+....|-||.+++.+++|+|....+
T Consensus 205 i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~n 284 (942)
T KOG0973|consen 205 IEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKN 284 (942)
T ss_pred eeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhcccccc
Confidence 11111 111345567889999998 566665557789999999999999999999864111
Q ss_pred -----C----cEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 157 -----K----CMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 157 -----~----~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
+ ..+|+|+.|++|-||.....++. ....+-....|..++|+|||..|+.+|.||+|.++.++.
T Consensus 285 g~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl-~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 285 GTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPL-FVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEE 356 (942)
T ss_pred CCccCCCcceEEEEEecCCccEEEEecCCCCch-hhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcch
Confidence 1 26899999999999999776652 222233467899999999999999999999999999974
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-19 Score=150.29 Aligned_cols=201 Identities=15% Similarity=0.147 Sum_probs=157.0
Q ss_pred eeceeEeeccccccceecccCCCCCCCEEEEccCCCeEEeccc-----eeeecc-ccccccccceEEEEcCCCCeEEEEe
Q psy13856 10 SCDGLLMTLKPTLEIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQG-SVYLRRESNKAGALSPKLNRSATSS 83 (271)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~-h~~~~~~~i~~~~~s~~~~~l~s~s 83 (271)
.++|.+..+....+..+.+..+.++|.+|+.|..+|.|.|||. +..+.+ |... |-+++|. +..+.+|+
T Consensus 204 ~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~r----vg~laW~--~~~lssGs 277 (484)
T KOG0305|consen 204 ASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASR----VGSLAWN--SSVLSSGS 277 (484)
T ss_pred cCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCce----eEEEecc--CceEEEec
Confidence 3456656655443556677777789999999999999999998 666777 8888 9999998 67899999
Q ss_pred CCCcEEEEEeecCCCCceeecc-ce----eeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCC
Q psy13856 84 FHEAAKHLGTVQSSSPACLQPK-YF----KLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSW 153 (271)
Q Consensus 84 ~d~~i~~~d~~~~~~~~~~~~~-~~----~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~ 153 (271)
.|+.|..+|++ ......... .+ -...++.++.++| +.+.|++.........+.+|.+.|.+++|+|-
T Consensus 278 r~~~I~~~dvR--~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~- 354 (484)
T KOG0305|consen 278 RDGKILNHDVR--ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPW- 354 (484)
T ss_pred CCCcEEEEEEe--cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCC-
Confidence 99999999995 222222212 22 3344667788888 77888333333678888999999999999997
Q ss_pred CCCCcEEEEEe--CCCeEEEEEcCCCce-----------------------------------e------eeeeeccCCC
Q psy13856 154 GLSKCMIASCS--QDRKVIIWTSNDYVT-----------------------------------W------TPFIMNTFDD 190 (271)
Q Consensus 154 ~~~~~~l~s~~--~dg~i~iwd~~~~~~-----------------------------------~------~~~~~~~h~~ 190 (271)
...+||+|+ .|+.|++||..++.. | ....+.+|..
T Consensus 355 --q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~ 432 (484)
T KOG0305|consen 355 --QSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS 432 (484)
T ss_pred --ccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc
Confidence 688999976 599999999986431 1 1345678999
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 191 VVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 191 ~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.|..++++|||..+++|+.|.++++|++-..
T Consensus 433 RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 433 RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 9999999999999999999999999998653
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.7e-20 Score=144.63 Aligned_cols=154 Identities=17% Similarity=0.264 Sum_probs=123.2
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc--------eeeeccccccccccceEEEEcCCC-CeEEEEeCCCcEEEEEeecC
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST--------ISLLQGSVYLRRESNKAGALSPKL-NRSATSSFHEAAKHLGTVQS 96 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~~~d~~~~ 96 (271)
...+||...|. |+||.--+.|++|.. -.-+.+|+.. |-++.|||.. ..|+|||.|++|++||++
T Consensus 216 ~LdWSp~~~g~-LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~S----VEDLqWSptE~~vfaScS~DgsIrIWDiR-- 288 (440)
T KOG0302|consen 216 GLDWSPIKTGR-LLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKS----VEDLQWSPTEDGVFASCSCDGSIRIWDIR-- 288 (440)
T ss_pred eeecccccccc-cccCccccceEeeeeccCceeecCccccccccc----hhhhccCCccCceEEeeecCceEEEEEec--
Confidence 45566655554 788888899999998 4556679999 9999999955 489999999999999994
Q ss_pred CCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC
Q psy13856 97 SSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 176 (271)
.++. +.....+.|.+.|+.|.|+.. ..+||+|+.||+++|||+++
T Consensus 289 -s~~~------------------------------~~~~~~kAh~sDVNVISWnr~----~~lLasG~DdGt~~iwDLR~ 333 (440)
T KOG0302|consen 289 -SGPK------------------------------KAAVSTKAHNSDVNVISWNRR----EPLLASGGDDGTLSIWDLRQ 333 (440)
T ss_pred -CCCc------------------------------cceeEeeccCCceeeEEccCC----cceeeecCCCceEEEEEhhh
Confidence 2210 122223789999999999984 55999999999999999987
Q ss_pred Cce-eeeeeeccCCCCeEEEEEecC-CCEEEEEECCCcEEEEEeCCC
Q psy13856 177 YVT-WTPFIMNTFDDVVWNVSWSLT-GDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 177 ~~~-~~~~~~~~h~~~v~~v~~~~~-g~~l~s~s~D~~v~iw~~~~~ 221 (271)
-+. .++..+..|..+|++|.|+|. ...|++++.|.+|.|||+...
T Consensus 334 ~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE 380 (440)
T KOG0302|consen 334 FKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE 380 (440)
T ss_pred ccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeecc
Confidence 532 126688899999999999995 567888889999999999754
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.8e-18 Score=137.91 Aligned_cols=190 Identities=18% Similarity=0.229 Sum_probs=145.7
Q ss_pred ccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCcee
Q psy13856 28 TESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACL 102 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~ 102 (271)
.....++++.+++++.|+.|++|+. ...+..|... +.++.|+++++++++++.|+.+++|+. .+++..
T Consensus 56 ~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~i~~~~~---~~~~~~ 128 (289)
T cd00200 56 DVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSY----VSSVAFSPDGRILSSSSRDKTIKVWDV---ETGKCL 128 (289)
T ss_pred EEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCc----EEEEEEcCCCCEEEEecCCCeEEEEEC---CCcEEE
Confidence 3344568889999999999999998 5566778877 999999999889988888999999998 444443
Q ss_pred eccc-----eeeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEE
Q psy13856 103 QPKY-----FKLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172 (271)
Q Consensus 103 ~~~~-----~~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iw 172 (271)
.... .....+...+.+++ +.+.+.+....+....+..|...+.++.|+| ++..+++++.|+.+++|
T Consensus 129 ~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~~~~i~i~ 204 (289)
T cd00200 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP----DGEKLLSSSSDGTIKLW 204 (289)
T ss_pred EEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECC----CcCEEEEecCCCcEEEE
Confidence 3321 22333444455555 5666622222256677778888999999999 58889999999999999
Q ss_pred EcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 173 TSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 173 d~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
|.+.... ...+..|...+.+++|+|++.++++++.|+.|++|++... .....+..+
T Consensus 205 d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~---~~~~~~~~~ 260 (289)
T cd00200 205 DLSTGKC--LGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG---ECVQTLSGH 260 (289)
T ss_pred ECCCCce--ecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCc---eeEEEcccc
Confidence 9988665 5566688889999999999889988888999999999865 455555544
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-18 Score=159.45 Aligned_cols=196 Identities=15% Similarity=0.056 Sum_probs=144.2
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccce-------------eeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEE
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRSTI-------------SLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHL 91 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~~-------------~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~ 91 (271)
+......++|+++|+|+.|+.|++|+.. ..+. +... +.+++|++ ++.+|++++.|++|++|
T Consensus 486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~----v~~l~~~~~~~~~las~~~Dg~v~lW 560 (793)
T PLN00181 486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSK----LSGICWNSYIKSQVASSNFEGVVQVW 560 (793)
T ss_pred EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCc----eeeEEeccCCCCEEEEEeCCCeEEEE
Confidence 4555566799999999999999999961 1111 2234 78999987 47899999999999999
Q ss_pred EeecCCCCceeecc-ce----eeEEEee-ccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEE
Q psy13856 92 GTVQSSSPACLQPK-YF----KLTVYST-KLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMI 160 (271)
Q Consensus 92 d~~~~~~~~~~~~~-~~----~~~~~~~-~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l 160 (271)
|. .+++.+... .+ ....+.. ++..++ +.|++++......+..+..+ ..+.++.|++. ++.+|
T Consensus 561 d~---~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~---~g~~l 633 (793)
T PLN00181 561 DV---ARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTK-ANICCVQFPSE---SGRSL 633 (793)
T ss_pred EC---CCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecC-CCeEEEEEeCC---CCCEE
Confidence 98 555555443 23 2333443 456666 78888332222566666644 67999999764 68999
Q ss_pred EEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC---CceeEEEEecccch
Q psy13856 161 ASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD---GAWQCITEMGKTSE 235 (271)
Q Consensus 161 ~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~---~~~~~~~~~~~~~~ 235 (271)
++|+.|+.|++||+++.... ...+.+|...|.++.|. ++.+|++++.|++|++||++.. ..+..+..+.+|..
T Consensus 634 atgs~dg~I~iwD~~~~~~~-~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~ 709 (793)
T PLN00181 634 AFGSADHKVYYYDLRNPKLP-LCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN 709 (793)
T ss_pred EEEeCCCeEEEEECCCCCcc-ceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC
Confidence 99999999999999876521 45677899999999997 6789999999999999999743 13456666666543
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.1e-18 Score=140.06 Aligned_cols=213 Identities=16% Similarity=0.162 Sum_probs=163.4
Q ss_pred ceeEeeccccccceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCC
Q psy13856 12 DGLLMTLKPTLEIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHE 86 (271)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~ 86 (271)
+-.+.+++ +....+......++...+++++.|..|++|.. ......|... |+.+..+|.|.+|++++.|+
T Consensus 251 ~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~----V~~ls~h~tgeYllsAs~d~ 325 (506)
T KOG0289|consen 251 NQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEP----VTGLSLHPTGEYLLSASNDG 325 (506)
T ss_pred hhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeeccccccCcccccccccc----ceeeeeccCCcEEEEecCCc
Confidence 33344443 22334444445568889999999999999998 5566789999 99999999999999999999
Q ss_pred cEEEEEeecCCCCceeecc-------ceeeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCC
Q psy13856 87 AAKHLGTVQSSSPACLQPK-------YFKLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWG 154 (271)
Q Consensus 87 ~i~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 154 (271)
+.-..|. +++.++... .+....+.+++..|. +.+++++-.....+..|.+|+++|..|+|+.+
T Consensus 326 ~w~Fsd~---~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsEN-- 400 (506)
T KOG0289|consen 326 TWAFSDI---SSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSEN-- 400 (506)
T ss_pred eEEEEEc---cCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccC--
Confidence 9977777 666665433 245666777777777 88898332222578889999999999999994
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccc
Q psy13856 155 LSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 155 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
|.||++++.|+.|++||+|..+.+....+.. ...+.+++|.+.|.+|+.++.|=+|++++-. ...|.++..+..+.
T Consensus 401 --GY~Lat~add~~V~lwDLRKl~n~kt~~l~~-~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~-~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 401 --GYWLATAADDGSVKLWDLRKLKNFKTIQLDE-KKEVNSLSFDQSGTYLGIAGSDLQVYICKKK-TKSWTEIKELADHS 476 (506)
T ss_pred --ceEEEEEecCCeEEEEEehhhcccceeeccc-cccceeEEEcCCCCeEEeecceeEEEEEecc-cccceeeehhhhcc
Confidence 9999999999999999999977632222222 2379999999999999999887777777644 46899999998887
Q ss_pred hhhh
Q psy13856 235 EQRA 238 (271)
Q Consensus 235 ~~~~ 238 (271)
+...
T Consensus 477 g~st 480 (506)
T KOG0289|consen 477 GLST 480 (506)
T ss_pred cccc
Confidence 5443
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.9e-20 Score=150.25 Aligned_cols=79 Identities=18% Similarity=0.245 Sum_probs=65.1
Q ss_pred CCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce-eeeeeeccCCC--CeEEEEEecCCCEEEEEECCCcEEE
Q psy13856 139 NHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT-WTPFIMNTFDD--VVWNVSWSLTGDILTVSCGDNSVSL 215 (271)
Q Consensus 139 ~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~v~i 215 (271)
+..-.++.++|+| |+.+||+|+.||.|.+|+...... .....-.+|.. .|+||.|+++|++|++-+.|+++++
T Consensus 315 g~Rv~~tsC~~nr----dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv 390 (641)
T KOG0772|consen 315 GKRVPVTSCAWNR----DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV 390 (641)
T ss_pred CcccCceeeecCC----CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence 3456788999999 799999999999999999865321 11233457765 8999999999999999999999999
Q ss_pred EEeCCC
Q psy13856 216 WKENTD 221 (271)
Q Consensus 216 w~~~~~ 221 (271)
||++.-
T Consensus 391 WDLrq~ 396 (641)
T KOG0772|consen 391 WDLRQF 396 (641)
T ss_pred eecccc
Confidence 999754
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.4e-19 Score=136.60 Aligned_cols=172 Identities=10% Similarity=0.099 Sum_probs=137.9
Q ss_pred CEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccce-ee
Q psy13856 36 HTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF-KL 109 (271)
Q Consensus 36 ~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~-~~ 109 (271)
..|++|+.||.|.+|+. +..+++|.+. |+.++.+|.+++.++.+.|+.+++|++..++...+...... ..
T Consensus 98 shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~----Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~ 173 (362)
T KOG0294|consen 98 SHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ----VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATL 173 (362)
T ss_pred hheeeecCCCcEEEEEcCCeEEeeeecccccc----cceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCccee
Confidence 37999999999999998 8899999999 99999999999999999999999999987777777666533 55
Q ss_pred EEEeeccceee----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeee
Q psy13856 110 TVYSTKLTRIL----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPF 183 (271)
Q Consensus 110 ~~~~~~~~~l~----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 183 (271)
..|...|.+|+ ..|-+ .+.. .....+. ....+.++.|-. +..+++|+.|+.|.+||.....+ ..
T Consensus 174 v~w~~~Gd~F~v~~~~~i~i~q~d~A--~v~~~i~-~~~r~l~~~~l~-----~~~L~vG~d~~~i~~~D~ds~~~--~~ 243 (362)
T KOG0294|consen 174 VSWSPQGDHFVVSGRNKIDIYQLDNA--SVFREIE-NPKRILCATFLD-----GSELLVGGDNEWISLKDTDSDTP--LT 243 (362)
T ss_pred eEEcCCCCEEEEEeccEEEEEecccH--hHhhhhh-ccccceeeeecC-----CceEEEecCCceEEEeccCCCcc--ce
Confidence 66777788776 34444 1222 1222221 224566777764 78999999999999999998665 77
Q ss_pred eeccCCCCeEEEEE--ecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 184 IMNTFDDVVWNVSW--SLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 184 ~~~~h~~~v~~v~~--~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.+.+|...|..+.+ +|++.+|+++|.||.|++||++..
T Consensus 244 ~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 244 EFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 88999999999884 467899999999999999999754
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=145.15 Aligned_cols=158 Identities=13% Similarity=0.117 Sum_probs=120.3
Q ss_pred CCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccc
Q psy13856 32 LRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKY 106 (271)
Q Consensus 32 ~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~ 106 (271)
.++|.+|+.|...|.|.+|.+ +..+.+|-.. |+++.|+-||.+|+|||.||.|.+|.+.+ .+..
T Consensus 90 ~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~----ITcL~fs~dgs~iiTgskDg~V~vW~l~~-----lv~a-- 158 (476)
T KOG0646|consen 90 SNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQS----ITCLKFSDDGSHIITGSKDGAVLVWLLTD-----LVSA-- 158 (476)
T ss_pred CCCceEEEeecccCcEEEEEeccccHHHHHHhhccc----eeEEEEeCCCcEEEecCCCccEEEEEEEe-----eccc--
Confidence 478999999989999999999 7788999999 99999999999999999999999999721 0000
Q ss_pred eeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce-------
Q psy13856 107 FKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT------- 179 (271)
Q Consensus 107 ~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~------- 179 (271)
..+....+.+.+..|.-+|+++...+.+ -..+++|+|.|.++++||+..+..
T Consensus 159 -------------------~~~~~~~p~~~f~~HtlsITDl~ig~Gg--~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp 217 (476)
T KOG0646|consen 159 -------------------DNDHSVKPLHIFSDHTLSITDLQIGSGG--TNARLYTASEDRTIKLWDLSLGVLLLTITFP 217 (476)
T ss_pred -------------------ccCCCccceeeeccCcceeEEEEecCCC--ccceEEEecCCceEEEEEeccceeeEEEecC
Confidence 1122235666677777777777666521 245677777777777777654210
Q ss_pred ------------------------------------------------eeeeeeccCCC--CeEEEEEecCCCEEEEEEC
Q psy13856 180 ------------------------------------------------WTPFIMNTFDD--VVWNVSWSLTGDILTVSCG 209 (271)
Q Consensus 180 ------------------------------------------------~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~ 209 (271)
.....+.+|.+ +|+|++.+-||..|++|+.
T Consensus 218 ~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~ 297 (476)
T KOG0646|consen 218 SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDE 297 (476)
T ss_pred CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCC
Confidence 11334567777 9999999999999999999
Q ss_pred CCcEEEEEeCCC
Q psy13856 210 DNSVSLWKENTD 221 (271)
Q Consensus 210 D~~v~iw~~~~~ 221 (271)
||+|.|||+.+.
T Consensus 298 dg~VcvWdi~S~ 309 (476)
T KOG0646|consen 298 DGKVCVWDIYSK 309 (476)
T ss_pred CCCEEEEecchH
Confidence 999999999876
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1e-18 Score=150.28 Aligned_cols=181 Identities=14% Similarity=0.165 Sum_probs=132.7
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
++..++. ..++|+++|.|.+||||++ --....|.+. |+|++|+| |.+++++|+-|+.+|||.+ ...+
T Consensus 372 ILDlSWS-Kn~fLLSSSMDKTVRLWh~~~~~CL~~F~Hndf----VTcVaFnPvDDryFiSGSLD~KvRiWsI---~d~~ 443 (712)
T KOG0283|consen 372 ILDLSWS-KNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDF----VTCVAFNPVDDRYFISGSLDGKVRLWSI---SDKK 443 (712)
T ss_pred heecccc-cCCeeEeccccccEEeecCCCcceeeEEecCCe----eEEEEecccCCCcEeecccccceEEeec---CcCe
Confidence 3444443 3568999999999999999 2234578888 99999999 8889999999999999998 4444
Q ss_pred eeecc----ceeeEEEeeccceee-----eEEEE--eeCCceEEeEEecCC------CcceEEEEEccCCCCCCcEEEEE
Q psy13856 101 CLQPK----YFKLTVYSTKLTRIL-----ILVRI--CGGDKWIEETKLENH------SDWVRDVAWAPSWGLSKCMIASC 163 (271)
Q Consensus 101 ~~~~~----~~~~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h------~~~v~~v~~~p~~~~~~~~l~s~ 163 (271)
..... ..+...+.++|+..+ |.+++ ..+.++.....+.-| ...|+++.|.|. +...++..
T Consensus 444 Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~---~~~~vLVT 520 (712)
T KOG0283|consen 444 VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPG---DPDEVLVT 520 (712)
T ss_pred eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCC---CCCeEEEe
Confidence 44332 336677888888766 66666 222222221122111 237999999996 66678888
Q ss_pred eCCCeEEEEEcCCCceeeeeeeccCCC--CeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 164 SQDRKVIIWTSNDYVTWTPFIMNTFDD--VVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 164 ~~dg~i~iwd~~~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
+.|..|+|+|.++... +..+.++.. .-....|+.||++|+++++|..|+||+..
T Consensus 521 SnDSrIRI~d~~~~~l--v~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~ 576 (712)
T KOG0283|consen 521 SNDSRIRIYDGRDKDL--VHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKND 576 (712)
T ss_pred cCCCceEEEeccchhh--hhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCC
Confidence 8999999999977654 445555532 34567899999999999999999999974
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.5e-19 Score=142.84 Aligned_cols=196 Identities=12% Similarity=0.086 Sum_probs=147.7
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
+......+++..+++++.|+.+++|++ ..++.+|++. |+++.|......+++|+.|.+|++||+ ....
T Consensus 222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdk----Vt~ak~~~~~~~vVsgs~DRtiK~WDl---~k~~ 294 (459)
T KOG0288|consen 222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDK----VTAAKFKLSHSRVVSGSADRTIKLWDL---QKAY 294 (459)
T ss_pred cceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccc----eeeehhhccccceeeccccchhhhhhh---hhhh
Confidence 344445578899999999999999999 7889999999 999999987777999999999999999 7788
Q ss_pred eeeccceeeEEEeec--cceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEE
Q psy13856 101 CLQPKYFKLTVYSTK--LTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT 173 (271)
Q Consensus 101 ~~~~~~~~~~~~~~~--~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd 173 (271)
|.+.......+.... ...++ +.|+.++...-.+..+...+. .|+++..++ ++..+.+++.|.++.+.|
T Consensus 295 C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~----~g~~lLsssRDdtl~viD 369 (459)
T KOG0288|consen 295 CSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSM----DGLELLSSSRDDTLKVID 369 (459)
T ss_pred eeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeecc----CCeEEeeecCCCceeeee
Confidence 887764422222211 12222 667773322115666666554 899999999 699999999999999999
Q ss_pred cCCCceeeeeeeccC--CCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchh
Q psy13856 174 SNDYVTWTPFIMNTF--DDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 174 ~~~~~~~~~~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
.++.+......-.+. ...++.+.|+|++.|+++||.||.|+||++.++ ++...+......
T Consensus 370 lRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tg---KlE~~l~~s~s~ 431 (459)
T KOG0288|consen 370 LRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTG---KLEKVLSLSTSN 431 (459)
T ss_pred cccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCc---eEEEEeccCCCC
Confidence 998764212222222 234889999999999999999999999999987 666666554443
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-19 Score=143.42 Aligned_cols=146 Identities=19% Similarity=0.223 Sum_probs=122.6
Q ss_pred CCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 33 RIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
.+..++++++.|+.+.|||. .....+|++. |.|++|+| ++..||+||.|++|++||++
T Consensus 238 ~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~----vn~~~fnp~~~~ilAT~S~D~tV~LwDlR---------- 303 (422)
T KOG0264|consen 238 LHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAE----VNCVAFNPFNEFILATGSADKTVALWDLR---------- 303 (422)
T ss_pred cchhhheeecCCCeEEEEEcCCCCCCCcccccccCCc----eeEEEeCCCCCceEEeccCCCcEEEeech----------
Confidence 36778999999999999999 3556788888 99999999 56689999999999999984
Q ss_pred cceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce-----
Q psy13856 105 KYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT----- 179 (271)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~----- 179 (271)
+-. .++..+.+|...|..|.|+|. ....||+++.|+++.+||+..-..
T Consensus 304 ----------------------nL~--~~lh~~e~H~dev~~V~WSPh---~etvLASSg~D~rl~vWDls~ig~eq~~e 356 (422)
T KOG0264|consen 304 ----------------------NLN--KPLHTFEGHEDEVFQVEWSPH---NETVLASSGTDRRLNVWDLSRIGEEQSPE 356 (422)
T ss_pred ----------------------hcc--cCceeccCCCcceEEEEeCCC---CCceeEecccCCcEEEEeccccccccChh
Confidence 112 577889999999999999998 688999999999999999965221
Q ss_pred -------eeeeeeccCCCCeEEEEEecCC-CEEEEEECCCcEEEEEeC
Q psy13856 180 -------WTPFIMNTFDDVVWNVSWSLTG-DILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 180 -------~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~v~iw~~~ 219 (271)
.....-.||...|..+.|+|+. ..+++.+.|+.+.||+..
T Consensus 357 da~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 357 DAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred hhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecc
Confidence 1123445899999999999975 567888899999999986
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.5e-19 Score=149.05 Aligned_cols=167 Identities=17% Similarity=0.236 Sum_probs=140.9
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-c
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-Y 106 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~ 106 (271)
.++-++++|+.|..|.+|.. +.++++|... |.++....++. ++|||+|.++++|.. +++.... .
T Consensus 69 ~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn----VC~ls~~~~~~-~iSgSWD~TakvW~~-----~~l~~~l~g 138 (745)
T KOG0301|consen 69 SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN----VCSLSIGEDGT-LISGSWDSTAKVWRI-----GELVYSLQG 138 (745)
T ss_pred ccCcceEeecccceEEEEecCCCCchhhhhccccc----eeeeecCCcCc-eEecccccceEEecc-----hhhhcccCC
Confidence 35567999999999999998 8899999999 99999888877 899999999999987 3333333 5
Q ss_pred eeeEEEeec----cceee----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc
Q psy13856 107 FKLTVYSTK----LTRIL----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV 178 (271)
Q Consensus 107 ~~~~~~~~~----~~~l~----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 178 (271)
++..+|... ..++. .+|+++..+ +.+++|.+|.+.|+.+++-| ...|+||+.||.|++|++ +++
T Consensus 139 H~asVWAv~~l~e~~~vTgsaDKtIklWk~~--~~l~tf~gHtD~VRgL~vl~-----~~~flScsNDg~Ir~w~~-~ge 210 (745)
T KOG0301|consen 139 HTASVWAVASLPENTYVTGSADKTIKLWKGG--TLLKTFSGHTDCVRGLAVLD-----DSHFLSCSNDGSIRLWDL-DGE 210 (745)
T ss_pred cchheeeeeecCCCcEEeccCcceeeeccCC--chhhhhccchhheeeeEEec-----CCCeEeecCCceEEEEec-cCc
Confidence 666665543 33333 888887777 78999999999999999998 568999999999999999 455
Q ss_pred eeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 179 TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 179 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
+ +..+.+|++-|++++..+++..++++++|++++||+..
T Consensus 211 ~--l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~ 249 (745)
T KOG0301|consen 211 V--LLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD 249 (745)
T ss_pred e--eeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC
Confidence 5 78899999999999988888999999999999999975
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-19 Score=154.26 Aligned_cols=158 Identities=20% Similarity=0.197 Sum_probs=124.4
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCceeeccce
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF 107 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~ 107 (271)
...+|+|||.||.|++||+ ..++.+.... |++++|+| .+..++++...|.+++||++
T Consensus 145 ep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSES----iRDV~fsp~~~~~F~s~~dsG~lqlWDlR------------- 207 (839)
T KOG0269|consen 145 EPNILISGSQDGTVKCWDLRSKKSKSTFRSNSES----IRDVKFSPGYGNKFASIHDSGYLQLWDLR------------- 207 (839)
T ss_pred CccEEEecCCCceEEEEeeecccccccccccchh----hhceeeccCCCceEEEecCCceEEEeecc-------------
Confidence 4568999999999999999 5666776666 99999998 67899999999999999994
Q ss_pred eeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeecc
Q psy13856 108 KLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187 (271)
Q Consensus 108 ~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 187 (271)
... ++...+.+|.++|.++.|+| ++.+||+||.|+.|+|||+...+......++
T Consensus 208 -------------------qp~--r~~~k~~AH~GpV~c~nwhP----nr~~lATGGRDK~vkiWd~t~~~~~~~~tIn- 261 (839)
T KOG0269|consen 208 -------------------QPD--RCEKKLTAHNGPVLCLNWHP----NREWLATGGRDKMVKIWDMTDSRAKPKHTIN- 261 (839)
T ss_pred -------------------Cch--hHHHHhhcccCceEEEeecC----CCceeeecCCCccEEEEeccCCCccceeEEe-
Confidence 112 46667789999999999999 5999999999999999999876642222332
Q ss_pred CCCCeEEEEEecCCC-EEEEEEC--CCcEEEEEeCCCCceeEEEEecccchh
Q psy13856 188 FDDVVWNVSWSLTGD-ILTVSCG--DNSVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 188 h~~~v~~v~~~~~g~-~l~s~s~--D~~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
-..+|.+|.|.|... +||+++. |..|+|||++. .+.+..++..|...
T Consensus 262 Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR--PYIP~~t~~eH~~~ 311 (839)
T KOG0269|consen 262 TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR--PYIPYATFLEHTDS 311 (839)
T ss_pred ecceeeeeeeccCccchhhhhhccccceEEEEeecc--ccccceeeeccCcc
Confidence 245899999999754 5666654 88999999973 34455555555433
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-18 Score=149.47 Aligned_cols=178 Identities=16% Similarity=0.184 Sum_probs=148.5
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccc-e
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKY-F 107 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~-~ 107 (271)
-+..|++|+.|.++++||. ...+.+|... +.++... +.++++|+.|.+|++|++ ..+.++.... +
T Consensus 260 ~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~st----v~~~~~~--~~~~~sgs~D~tVkVW~v---~n~~~l~l~~~h 330 (537)
T KOG0274|consen 260 GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSS----VRCLTID--PFLLVSGSRDNTVKVWDV---TNGACLNLLRGH 330 (537)
T ss_pred CCCEEEEEecCCcEEeEecCCCcEEEEecCCCce----EEEEEcc--CceEeeccCCceEEEEec---cCcceEEEeccc
Confidence 3778999999999999999 8889999999 8888775 457888999999999999 8888888875 6
Q ss_pred eeEEEeec--cceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC-ce
Q psy13856 108 KLTVYSTK--LTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY-VT 179 (271)
Q Consensus 108 ~~~~~~~~--~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~-~~ 179 (271)
...+.+.. +..++ +.|++++....++++++.+|..+|.++.+.+ ...+++|+.|++|++||+++. ++
T Consensus 331 ~~~V~~v~~~~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~-----~~~~~Sgs~D~~IkvWdl~~~~~c 405 (537)
T KOG0274|consen 331 TGPVNCVQLDEPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDS-----ENRLLSGSLDTTIKVWDLRTKRKC 405 (537)
T ss_pred cccEEEEEecCCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecC-----cceEEeeeeccceEeecCCchhhh
Confidence 55444433 55555 7788844445599999999999999998876 279999999999999999998 66
Q ss_pred eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 180 WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 180 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
...+.+|.+-+..+.+ .+++|++++.|++|++||.+++ ++...+++
T Consensus 406 --~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~---~~~~~~~~ 451 (537)
T KOG0274|consen 406 --IHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEG---ECLRTLEG 451 (537)
T ss_pred --hhhhcCCccccccccc--ccceeEeccccccEEEeecccC---ceeeeecc
Confidence 7889999988866654 4679999999999999999887 66676766
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.6e-19 Score=139.95 Aligned_cols=184 Identities=14% Similarity=0.129 Sum_probs=137.1
Q ss_pred eecccCCCCCC-CEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 25 ETYTESPLRIG-HTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 25 ~~~~~~~~~~g-~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
.+++..-.|+. ..++||+.||.|++||+ +..++.|.+. |.++.+.. ..++++++|.+|+.|-.. .
T Consensus 68 GV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~----V~Gi~v~~--~~~~tvgdDKtvK~wk~~---~ 138 (433)
T KOG0268|consen 68 GVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGL----VRGICVTQ--TSFFTVGDDKTVKQWKID---G 138 (433)
T ss_pred ccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCc----eeeEEecc--cceEEecCCcceeeeecc---C
Confidence 34444444555 56999999999999999 7889999999 99999986 678899999999999963 1
Q ss_pred CceeeccceeeEEEeec----cceee---eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEE
Q psy13856 99 PACLQPKYFKLTVYSTK----LTRIL---ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII 171 (271)
Q Consensus 99 ~~~~~~~~~~~~~~~~~----~~~l~---~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~i 171 (271)
....++.........+ ...++ ..|.|++.....++..+....+.|.++.|+|. ....|++|+.|+.|.+
T Consensus 139 -~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpv---ETsILas~~sDrsIvL 214 (433)
T KOG0268|consen 139 -PPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPV---ETSILASCASDRSIVL 214 (433)
T ss_pred -CcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCC---cchheeeeccCCceEE
Confidence 2232221111111122 23333 45666443333678888888889999999997 5778899989999999
Q ss_pred EEcCCCce----------------------------------------eeeeeeccCCCCeEEEEEecCCCEEEEEECCC
Q psy13856 172 WTSNDYVT----------------------------------------WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDN 211 (271)
Q Consensus 172 wd~~~~~~----------------------------------------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 211 (271)
||++...+ .+.....+|.++|.+|+|+|.|+-+++||.|.
T Consensus 215 yD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDk 294 (433)
T KOG0268|consen 215 YDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDK 294 (433)
T ss_pred EecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhccccccc
Confidence 99987432 01233457888999999999999999999999
Q ss_pred cEEEEEeCCC
Q psy13856 212 SVSLWKENTD 221 (271)
Q Consensus 212 ~v~iw~~~~~ 221 (271)
+|+||..+.+
T Consensus 295 sIRIf~~~~~ 304 (433)
T KOG0268|consen 295 SIRIFPVNHG 304 (433)
T ss_pred eEEEeecCCC
Confidence 9999998743
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.7e-19 Score=139.05 Aligned_cols=170 Identities=17% Similarity=0.236 Sum_probs=133.6
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc---------------------eeeeccccccccccceEEEEcCCCC-eEEEEeC
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST---------------------ISLLQGSVYLRRESNKAGALSPKLN-RSATSSF 84 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~---------------------~~~~~~h~~~~~~~i~~~~~s~~~~-~l~s~s~ 84 (271)
...++..+..+.++-+..|.|.||++ +.++.+|... =++++|||-.. .|++|..
T Consensus 157 vr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~E----Gy~LdWSp~~~g~LlsGDc 232 (440)
T KOG0302|consen 157 VRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGE----GYGLDWSPIKTGRLLSGDC 232 (440)
T ss_pred eeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCcc----ceeeecccccccccccCcc
Confidence 34445556778888999999999998 5667788877 78999999332 5788888
Q ss_pred CCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEE-eEEecCCCcceEEEEEccCCCCCCcEEEEE
Q psy13856 85 HEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIE-ETKLENHSDWVRDVAWAPSWGLSKCMIASC 163 (271)
Q Consensus 85 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~-~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~ 163 (271)
-+.|++|.. .+ +.|.. ...+.+|+..|..++|+|. ....|+||
T Consensus 233 ~~~I~lw~~---~~------------------------------g~W~vd~~Pf~gH~~SVEDLqWSpt---E~~vfaSc 276 (440)
T KOG0302|consen 233 VKGIHLWEP---ST------------------------------GSWKVDQRPFTGHTKSVEDLQWSPT---EDGVFASC 276 (440)
T ss_pred ccceEeeee---cc------------------------------CceeecCccccccccchhhhccCCc---cCceEEee
Confidence 888989987 22 22222 2345679999999999997 68899999
Q ss_pred eCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchh
Q psy13856 164 SQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 164 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
|.||+|+|||+|.+.........+|.+.|+-+.|+....+||+|++||+++|||++.-..-+++..++.|...
T Consensus 277 S~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~p 349 (440)
T KOG0302|consen 277 SCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAP 349 (440)
T ss_pred ecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCC
Confidence 9999999999999854334455899999999999998889999999999999999864333556666665543
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-18 Score=138.67 Aligned_cols=174 Identities=16% Similarity=0.145 Sum_probs=137.1
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCC-CCeEEEEeCCCcEEEEEeecCCCCceeeccc
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPK-LNRSATSSFHEAAKHLGTVQSSSPACLQPKY 106 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~-~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~ 106 (271)
.+++.+++|++|+.+++||+ ...+.+|++- |++.+|+|- +..++|||.||.||+||++. ....+....
T Consensus 121 ~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDY----VR~g~~~~~~~hivvtGsYDg~vrl~DtR~--~~~~v~eln 194 (487)
T KOG0310|consen 121 QDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDY----VRCGDISPANDHIVVTGSYDGKVRLWDTRS--LTSRVVELN 194 (487)
T ss_pred cCCeEEEecCCCceEEEEEcCCcEEEEEecCCcce----eEeeccccCCCeEEEecCCCceEEEEEecc--CCceeEEec
Confidence 57889999999999999999 4478899999 999999994 56899999999999999952 213333332
Q ss_pred e----eeEEEeeccceee----eEEEE-e-e-CCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcC
Q psy13856 107 F----KLTVYSTKLTRIL----ILVRI-C-G-GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSN 175 (271)
Q Consensus 107 ~----~~~~~~~~~~~l~----~~v~i-~-~-~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 175 (271)
+ ...++-+.+..++ +.+++ + . .+ +.+..+..|...|+|+++.. ++..|++|+-|+.+++||..
T Consensus 195 hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s----~~~rLlS~sLD~~VKVfd~t 268 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLAS----DSTRLLSGSLDRHVKVFDTT 268 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeec----CCceEeecccccceEEEEcc
Confidence 2 3344445567777 88888 2 2 34 56666667999999999998 68999999999999999976
Q ss_pred CCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 176 DYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 176 ~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+-+ +..-....++|.+++.+|+++.++.|..||.+.+=+....
T Consensus 269 ~~K---vv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k 311 (487)
T KOG0310|consen 269 NYK---VVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVK 311 (487)
T ss_pred ceE---EEEeeecccceeeEEecCCCceEEEecccceeeeehhhcc
Confidence 644 3333457889999999999999999999998877754433
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.2e-19 Score=145.72 Aligned_cols=177 Identities=15% Similarity=0.154 Sum_probs=143.9
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
|.....||.++.++|..||.|+|||+ ++.+++|++. +.|+..++||..|-+|+-|.++|.||+ ++++.
T Consensus 513 yALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDG----ascIdis~dGtklWTGGlDntvRcWDl---regrq 585 (705)
T KOG0639|consen 513 YALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG----ASCIDISKDGTKLWTGGLDNTVRCWDL---REGRQ 585 (705)
T ss_pred hhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCC----ceeEEecCCCceeecCCCccceeehhh---hhhhh
Confidence 55555689999999999999999999 7889999999 999999999999999999999999999 66666
Q ss_pred eeccceeeEEEeec----cceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEE
Q psy13856 102 LQPKYFKLTVYSTK----LTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII 171 (271)
Q Consensus 102 ~~~~~~~~~~~~~~----~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~i 171 (271)
+....+...+|+.. +..++ +.+.+ ...+ .....+.-|++.|.++.|++. |.+|++.+.|..+..
T Consensus 586 lqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~sk--p~kyqlhlheScVLSlKFa~c----GkwfvStGkDnlLna 659 (705)
T KOG0639|consen 586 LQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSK--PEKYQLHLHESCVLSLKFAYC----GKWFVSTGKDNLLNA 659 (705)
T ss_pred hhhhhhhhhheecccCCCccceeeecccCcEEEEecCC--ccceeecccccEEEEEEeccc----CceeeecCchhhhhh
Confidence 66555555555543 66666 55666 3333 334456678999999999994 999999999999999
Q ss_pred EEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 172 WTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 172 wd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
|..-.+.. +... ...+.|.+...+.|.+++++|+.|.+..+|.+.
T Consensus 660 wrtPyGas--iFqs-kE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV~ 704 (705)
T KOG0639|consen 660 WRTPYGAS--IFQS-KESSSVLSCDISFDDKYIVTGSGDKKATVYEVI 704 (705)
T ss_pred ccCccccc--eeec-cccCcceeeeeccCceEEEecCCCcceEEEEEe
Confidence 99877654 2222 245689999999999999999999999998763
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.1e-18 Score=125.90 Aligned_cols=188 Identities=12% Similarity=-0.008 Sum_probs=130.0
Q ss_pred cccceecccCCCCCCCEEEEccCCCeEEeccc----------eeeeccccccccccceEEEEcCC----CCeEEEEe-CC
Q psy13856 21 TLEIETYTESPLRIGHTLISCDTQAHIGIRST----------ISLLQGSVYLRRESNKAGALSPK----LNRSATSS-FH 85 (271)
Q Consensus 21 ~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~----------~~~~~~h~~~~~~~i~~~~~s~~----~~~l~s~s-~d 85 (271)
.+.-.+|+....|+|++|++|+.|.+|++.-+ --.+.-|.+. |++++|-.+ +..|++++ .|
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgt----irdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGT----IRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCc----eeeeEEecCCCcCceEEEecCCCc
Confidence 34466788888899999999999999999766 2345567777 888888543 33555543 45
Q ss_pred CcEEEE--------EeecCCCCceeeccceeeEEEeec-cceeeeEEEEeeCCceEEeEEe----cC---CCcceEEEEE
Q psy13856 86 EAAKHL--------GTVQSSSPACLQPKYFKLTVYSTK-LTRILILVRICGGDKWIEETKL----EN---HSDWVRDVAW 149 (271)
Q Consensus 86 ~~i~~~--------d~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~v~i~~~~~~~~~~~~----~~---h~~~v~~v~~ 149 (271)
..|++- ....++++..+.........+... .. .+|+.++-+...++..+ .+ ..+.|.+++.
T Consensus 163 c~iy~tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqd---ktirfwdlrv~~~v~~l~~~~~~~glessavaav~v 239 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQD---KTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAV 239 (350)
T ss_pred ceEEEeecCCCCcceeecCCcccEEEEEEecCcEEEccCCC---ceEEEEeeeccceeeeccCcccCCCcccceeEEEEE
Confidence 555553 233445555544332222111111 11 22333111110222222 11 2367999999
Q ss_pred ccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 150 APSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 150 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.| .|++|++|..|..+.+||++.++. ++.+..|...|.||.|+|...|+++++.|.+|++-|+..+
T Consensus 240 dp----sgrll~sg~~dssc~lydirg~r~--iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd 305 (350)
T KOG0641|consen 240 DP----SGRLLASGHADSSCMLYDIRGGRM--IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD 305 (350)
T ss_pred CC----CcceeeeccCCCceEEEEeeCCce--eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence 99 699999999999999999999887 8889999999999999999999999999999999999754
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.4e-18 Score=138.08 Aligned_cols=181 Identities=13% Similarity=0.085 Sum_probs=142.1
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
+++....+||.+||+|+.|..|.||+. ++.+.+|.+. |.+++|-.....+++++.|+++++|++ ....
T Consensus 205 il~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~----V~~L~fr~gt~~lys~s~Drsvkvw~~---~~~s 277 (479)
T KOG0299|consen 205 ILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGA----VSSLAFRKGTSELYSASADRSVKVWSI---DQLS 277 (479)
T ss_pred eEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccc----eeeeeeecCccceeeeecCCceEEEeh---hHhH
Confidence 444445579999999999999999999 7889999999 999999988889999999999999998 5555
Q ss_pred eeecc-ceeeEEEeec---cceee------eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeE
Q psy13856 101 CLQPK-YFKLTVYSTK---LTRIL------ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 169 (271)
Q Consensus 101 ~~~~~-~~~~~~~~~~---~~~l~------~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i 169 (271)
.+.+. .++..+...+ -.+.+ +++++ .... ...-.+.+|.+.+-|++|-. ...|++|+.||.|
T Consensus 278 ~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e--esqlifrg~~~sidcv~~In-----~~HfvsGSdnG~I 350 (479)
T KOG0299|consen 278 YVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE--ESQLIFRGGEGSIDCVAFIN-----DEHFVSGSDNGSI 350 (479)
T ss_pred HHHHHhCCccceeeechhcccceEEeccccceeEEEeccc--cceeeeeCCCCCeeeEEEec-----ccceeeccCCceE
Confidence 66555 5566665555 22222 56666 2222 33445678999999999985 6899999999999
Q ss_pred EEEEcCCCceeeeeeeccC-----------CCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 170 IIWTSNDYVTWTPFIMNTF-----------DDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~h-----------~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.+|++.+.++..... .+| ..+|++++..|...++++|+.+|.|++|.+..+
T Consensus 351 aLWs~~KKkplf~~~-~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 351 ALWSLLKKKPLFTSR-LAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred EEeeecccCceeEee-ccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 999998766532211 122 238899999999999999999999999999876
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.5e-18 Score=142.73 Aligned_cols=205 Identities=17% Similarity=0.145 Sum_probs=158.5
Q ss_pred cceeEEee-ceeEeecccccccee----cccCC------------CCCCCEEEEccCCCeEEeccc-------eeeeccc
Q psy13856 4 KEWLLVSC-DGLLMTLKPTLEIET----YTESP------------LRIGHTLISCDTQAHIGIRST-------ISLLQGS 59 (271)
Q Consensus 4 ~~~~~~~~-~~~~~~~~~~~~~~~----~~~~~------------~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h 59 (271)
++.|++.. ||.+..++-..+-.. |..+- .-+|+.|+|+|.|-+|++|+. +.++..|
T Consensus 37 ~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H 116 (735)
T KOG0308|consen 37 GRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTH 116 (735)
T ss_pred CceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcc
Confidence 34455544 888888864433221 11110 146789999999999999998 6788999
Q ss_pred cccccccceEEEE-cCCCCeEEEEeCCCcEEEEEeecCCCCce--eecc----------ceeeEEEeec----cceee--
Q psy13856 60 VYLRRESNKAGAL-SPKLNRSATSSFHEAAKHLGTVQSSSPAC--LQPK----------YFKLTVYSTK----LTRIL-- 120 (271)
Q Consensus 60 ~~~~~~~i~~~~~-s~~~~~l~s~s~d~~i~~~d~~~~~~~~~--~~~~----------~~~~~~~~~~----~~~l~-- 120 (271)
.+- |.|+++ .++...+|+||-|+.|.+||+ +++.. +... +....+++.+ +..++
T Consensus 117 ~DY----Vkcla~~ak~~~lvaSgGLD~~IflWDi---n~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG 189 (735)
T KOG0308|consen 117 KDY----VKCLAYIAKNNELVASGGLDRKIFLWDI---NTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG 189 (735)
T ss_pred cch----heeeeecccCceeEEecCCCccEEEEEc---cCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence 999 999999 778889999999999999999 54422 1111 1123334433 32333
Q ss_pred ---eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEE
Q psy13856 121 ---ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSW 197 (271)
Q Consensus 121 ---~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~ 197 (271)
+.+++++....+.+..+.||+..|.++..++ ||..+++++.||+|++||+...+| ...+..|...|+++..
T Consensus 190 gtek~lr~wDprt~~kimkLrGHTdNVr~ll~~d----DGt~~ls~sSDgtIrlWdLgqQrC--l~T~~vH~e~VWaL~~ 263 (735)
T KOG0308|consen 190 GTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVND----DGTRLLSASSDGTIRLWDLGQQRC--LATYIVHKEGVWALQS 263 (735)
T ss_pred CcccceEEeccccccceeeeeccccceEEEEEcC----CCCeEeecCCCceEEeeeccccce--eeeEEeccCceEEEee
Confidence 6666644443377888899999999999999 799999999999999999999888 7889999999999999
Q ss_pred ecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 198 SLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 198 ~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+|+=.++.+|+.|+.|+.=|+++.
T Consensus 264 ~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 264 SPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred CCCcceEEecCCCCcEEecccCCc
Confidence 999999999999999999999864
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.7e-18 Score=128.34 Aligned_cols=199 Identities=12% Similarity=0.010 Sum_probs=147.0
Q ss_pred ceeEeeccccccceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEe---
Q psy13856 12 DGLLMTLKPTLEIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSS--- 83 (271)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s--- 83 (271)
||..+--...+.-.++++....+...+++|+.|.+++|||+ +..++. ... |..+.|+++|++++...
T Consensus 41 nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~-~~~----Vk~~~F~~~gn~~l~~tD~~ 115 (327)
T KOG0643|consen 41 NGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKT-NSP----VKRVDFSFGGNLILASTDKQ 115 (327)
T ss_pred CCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeec-CCe----eEEEeeccCCcEEEEEehhh
Confidence 34433333455566778777788899999999999999999 343332 234 78999999999887765
Q ss_pred --CCCcEEEEEeecCC----CCc-eeecc----ceeeEEEeeccceee-----eEEEE--eeCCceEEeEEecCCCcceE
Q psy13856 84 --FHEAAKHLGTVQSS----SPA-CLQPK----YFKLTVYSTKLTRIL-----ILVRI--CGGDKWIEETKLENHSDWVR 145 (271)
Q Consensus 84 --~d~~i~~~d~~~~~----~~~-~~~~~----~~~~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~ 145 (271)
..+.|.++|+++.. ... .++.. .....+|...++.++ +.|.. ..++ .+.+.+.+.|...|+
T Consensus 116 mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g-~~~v~s~~~h~~~In 194 (327)
T KOG0643|consen 116 MGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTG-KELVDSDEEHSSKIN 194 (327)
T ss_pred cCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccC-ceeeechhhhccccc
Confidence 34678899986332 122 11111 235566666677766 77777 2332 267777788999999
Q ss_pred EEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce----------------------------------------------
Q psy13856 146 DVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT---------------------------------------------- 179 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------------------------------------------- 179 (271)
.++++| |..+|++++.|.+-++||.++-..
T Consensus 195 d~q~s~----d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEAr 270 (327)
T KOG0643|consen 195 DLQFSR----DRTYFITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEAR 270 (327)
T ss_pred cccccC----CcceEEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhh
Confidence 999999 799999999999999999986211
Q ss_pred -------eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 180 -------WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 180 -------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
.+...+.+|-++|++|+|+|+|.-.++|+.||.|++.-++.
T Consensus 271 Fyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 271 FYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred HHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 11334567889999999999999999999999999997764
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=6.2e-17 Score=120.20 Aligned_cols=195 Identities=16% Similarity=0.079 Sum_probs=139.6
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc--------------------eeeeccccccccccceEEEEcCCCCeEEEEeCC
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST--------------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH 85 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~--------------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d 85 (271)
+..+...|+|.+.+.|+...+.|+... .+.-+.|.+. |+|.+|+|+|+++++|+.|
T Consensus 35 irav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgs----iyc~~ws~~geliatgsnd 110 (350)
T KOG0641|consen 35 IRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGS----IYCTAWSPCGELIATGSND 110 (350)
T ss_pred eeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCcc----EEEEEecCccCeEEecCCC
Confidence 344556689999999999999999876 2233567777 9999999999999999999
Q ss_pred CcEEEEEeecC---CCCceeeccce----eeEEEeec----cceee----eEEEE--eeCCceEEeEEecCCCcceEEEE
Q psy13856 86 EAAKHLGTVQS---SSPACLQPKYF----KLTVYSTK----LTRIL----ILVRI--CGGDKWIEETKLENHSDWVRDVA 148 (271)
Q Consensus 86 ~~i~~~d~~~~---~~~~~~~~~~~----~~~~~~~~----~~~l~----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~ 148 (271)
.+|++...... .++..++...+ ....|-.+ +..++ +..+| .+-++-+..+.+.+|.+-|.++-
T Consensus 111 k~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly 190 (350)
T KOG0641|consen 111 KTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY 190 (350)
T ss_pred ceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE
Confidence 99999765210 11222222211 22222221 34444 44444 22222267888999999988763
Q ss_pred -EccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeec--cC-----CCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 149 -WAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMN--TF-----DDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 149 -~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~h-----~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
|+ +..|++|+.|.+|++||++-..+ +..+. -| .++|.+|+..|.|++|++|-.|....+||++.
T Consensus 191 swn------~~m~~sgsqdktirfwdlrv~~~--v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg 262 (350)
T KOG0641|consen 191 SWN------GAMFASGSQDKTIRFWDLRVNSC--VNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG 262 (350)
T ss_pred Eec------CcEEEccCCCceEEEEeeeccce--eeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeC
Confidence 43 68999999999999999998776 44332 22 25899999999999999999999999999997
Q ss_pred CCceeEEEEecccch
Q psy13856 221 DGAWQCITEMGKTSE 235 (271)
Q Consensus 221 ~~~~~~~~~~~~~~~ 235 (271)
+ ..++++-.|..
T Consensus 263 ~---r~iq~f~phsa 274 (350)
T KOG0641|consen 263 G---RMIQRFHPHSA 274 (350)
T ss_pred C---ceeeeeCCCcc
Confidence 7 66666666553
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-19 Score=150.42 Aligned_cols=175 Identities=14% Similarity=0.121 Sum_probs=147.2
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-c
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-Y 106 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~ 106 (271)
..+..+++|+.|..+-+|.. +-.+.+|... |.++.|+++..+|++|+.+|+|++||+ ...+.++.. +
T Consensus 38 ~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hesp----IeSl~f~~~E~LlaagsasgtiK~wDl---eeAk~vrtLtg 110 (825)
T KOG0267|consen 38 KSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESP----IESLTFDTSERLLAAGSASGTIKVWDL---EEAKIVRTLTG 110 (825)
T ss_pred ccceeeccCCCceeeccccccCCchhheeeccCCc----ceeeecCcchhhhcccccCCceeeeeh---hhhhhhhhhhc
Confidence 35678999999999999998 5568999999 999999999999999999999999999 666655544 2
Q ss_pred e----eeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC
Q psy13856 107 F----KLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY 177 (271)
Q Consensus 107 ~----~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 177 (271)
+ ....|.+-+.+++ ..+++++.....+...+.+|...|..+.|+| +|.++++|+.|..++|||...+
T Consensus 111 h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP----~Gr~v~~g~ed~tvki~d~~ag 186 (825)
T KOG0267|consen 111 HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSP----DGRWVASGGEDNTVKIWDLTAG 186 (825)
T ss_pred cccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecC----CCceeeccCCcceeeeeccccc
Confidence 2 2222444466665 5555644444468899999999999999999 7999999999999999999988
Q ss_pred ceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 178 VTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 178 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
+. ...+..|++.+..+.|+|..-++++|+.|+++++||+++
T Consensus 187 k~--~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dlet 227 (825)
T KOG0267|consen 187 KL--SKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLET 227 (825)
T ss_pred cc--ccccccccccccccccCchhhhhccCCCCceeeeeccce
Confidence 86 778899999999999999999999999999999999874
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-18 Score=137.29 Aligned_cols=145 Identities=17% Similarity=0.219 Sum_probs=119.3
Q ss_pred eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCce
Q psy13856 53 ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKW 131 (271)
Q Consensus 53 ~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~ 131 (271)
.-.+.+|++. |.+++|+| +.+.|||||.|.+|.+|.+.+ .+. .. . ..
T Consensus 74 ~P~v~GHt~~----vLDi~w~PfnD~vIASgSeD~~v~vW~IPe--~~l-~~-----------------------~--lt 121 (472)
T KOG0303|consen 74 YPLVCGHTAP----VLDIDWCPFNDCVIASGSEDTKVMVWQIPE--NGL-TR-----------------------D--LT 121 (472)
T ss_pred CCCccCcccc----ccccccCccCCceeecCCCCceEEEEECCC--ccc-cc-----------------------C--cc
Confidence 4456799999 99999999 667999999999999999841 111 11 1 11
Q ss_pred EEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCC
Q psy13856 132 IEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDN 211 (271)
Q Consensus 132 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 211 (271)
+++..+.+|...|.-|+|+|. -.+.|++++.|..|.+|++.+++. ...+. |.+.|++++|+.+|.+|++.+.|.
T Consensus 122 epvv~L~gH~rrVg~V~wHPt---A~NVLlsag~Dn~v~iWnv~tgea--li~l~-hpd~i~S~sfn~dGs~l~TtckDK 195 (472)
T KOG0303|consen 122 EPVVELYGHQRRVGLVQWHPT---APNVLLSAGSDNTVSIWNVGTGEA--LITLD-HPDMVYSMSFNRDGSLLCTTCKDK 195 (472)
T ss_pred cceEEEeecceeEEEEeeccc---chhhHhhccCCceEEEEeccCCce--eeecC-CCCeEEEEEeccCCceeeeecccc
Confidence 678889999999999999997 688999999999999999999985 34444 999999999999999999999999
Q ss_pred cEEEEEeCCCCceeEEEEecccchhhh
Q psy13856 212 SVSLWKENTDGAWQCITEMGKTSEQRA 238 (271)
Q Consensus 212 ~v~iw~~~~~~~~~~~~~~~~~~~~~~ 238 (271)
+|+|||.+.+ +.+.+-..|.+.-+
T Consensus 196 kvRv~dpr~~---~~v~e~~~heG~k~ 219 (472)
T KOG0303|consen 196 KVRVIDPRRG---TVVSEGVAHEGAKP 219 (472)
T ss_pred eeEEEcCCCC---cEeeecccccCCCc
Confidence 9999999987 55555555554443
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.8e-17 Score=138.93 Aligned_cols=177 Identities=19% Similarity=0.162 Sum_probs=140.4
Q ss_pred ccceecccCCCCCCCEEEEccCCCeEEeccc---eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 22 LEIETYTESPLRIGHTLISCDTQAHIGIRST---ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 22 ~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~---~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
++..+.+.+...++. ++|||.|.++++|.. ...+++|... |+++++-|++ .++|||.|.+||+|.-
T Consensus 100 H~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l~~~l~gH~as----VWAv~~l~e~-~~vTgsaDKtIklWk~----- 168 (745)
T KOG0301|consen 100 HKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGELVYSLQGHTAS----VWAVASLPEN-TYVTGSADKTIKLWKG----- 168 (745)
T ss_pred cccceeeeecCCcCc-eEecccccceEEecchhhhcccCCcchh----eeeeeecCCC-cEEeccCcceeeeccC-----
Confidence 345556666666666 999999999999998 6779999999 9999999987 7889999999999985
Q ss_pred Cceeecc-ceeeEEEeec---c-ceee----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCe
Q psy13856 99 PACLQPK-YFKLTVYSTK---L-TRIL----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK 168 (271)
Q Consensus 99 ~~~~~~~-~~~~~~~~~~---~-~~l~----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~ 168 (271)
+.+++++ ++..++-... . .++- +.|++ ..++ .++.++.+|++.|++++..+ +...++++++|++
T Consensus 169 ~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~g--e~l~~~~ghtn~vYsis~~~----~~~~Ivs~gEDrt 242 (745)
T KOG0301|consen 169 GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDG--EVLLEMHGHTNFVYSISMAL----SDGLIVSTGEDRT 242 (745)
T ss_pred CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEeccC--ceeeeeeccceEEEEEEecC----CCCeEEEecCCce
Confidence 5566666 4444443322 3 3443 88888 5567 78999999999999999777 5889999999999
Q ss_pred EEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 169 VIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 169 i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
++||+.. ++ .+.+.--...++++.+-++|. +++|+.||.|+||..+.
T Consensus 243 lriW~~~--e~--~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k 289 (745)
T KOG0301|consen 243 LRIWKKD--EC--VQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK 289 (745)
T ss_pred EEEeecC--ce--EEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence 9999987 43 444443345899999999888 56777899999998763
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=2e-17 Score=128.17 Aligned_cols=181 Identities=13% Similarity=0.042 Sum_probs=129.6
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
.-++...+.|.+||.|+.||.|.|||+ -+.+.+|..+ |.+++||+||+.|+++|.|.++.+||+ ..+.
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~p----i~sl~WS~dgr~LltsS~D~si~lwDl---~~gs 98 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRP----ITSLCWSRDGRKLLTSSRDWSIKLWDL---LKGS 98 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccc----eeEEEecCCCCEeeeecCCceeEEEec---cCCC
Confidence 445556689999999999999999999 5678899999 999999999999999999999999999 5666
Q ss_pred eeeccceeeEEEeec------cceee-----eEEEE-eeCCceEEeEEe-cCCC-cceEEEEEccCCCCCCcEEEEEeCC
Q psy13856 101 CLQPKYFKLTVYSTK------LTRIL-----ILVRI-CGGDKWIEETKL-ENHS-DWVRDVAWAPSWGLSKCMIASCSQD 166 (271)
Q Consensus 101 ~~~~~~~~~~~~~~~------~~~l~-----~~v~i-~~~~~~~~~~~~-~~h~-~~v~~v~~~p~~~~~~~~l~s~~~d 166 (271)
+++.+.++..++... .+.++ ..+.+ ..+..-..+..- .+.. ..-.+..|.+ .|++|++|...
T Consensus 99 ~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr----~g~yIitGtsK 174 (405)
T KOG1273|consen 99 PLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDR----RGKYIITGTSK 174 (405)
T ss_pred ceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccC----CCCEEEEecCc
Confidence 766665544443332 11222 11111 111100000000 0000 1112335677 59999999999
Q ss_pred CeEEEEEcCCCceeeeeeeccC-CCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 167 RKVIIWTSNDYVTWTPFIMNTF-DDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~h-~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
|.+.++|..+.++ +..+.-- ...|..+.++..|++|+..+.|+.|+.|+++
T Consensus 175 Gkllv~~a~t~e~--vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 175 GKLLVYDAETLEC--VASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred ceEEEEecchhee--eeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 9999999999776 4444433 3789999999999999999999999999986
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.8e-17 Score=138.82 Aligned_cols=171 Identities=17% Similarity=0.173 Sum_probs=125.7
Q ss_pred CEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-c-ee
Q psy13856 36 HTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-Y-FK 108 (271)
Q Consensus 36 ~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~-~~ 108 (271)
+.++.|.. ..|.+|+. ......+... |+++.|+++|++|+.|..+|.+.+||. .+.+..+.. . +.
T Consensus 189 n~laValg-~~vylW~~~s~~v~~l~~~~~~~----vtSv~ws~~G~~LavG~~~g~v~iwD~---~~~k~~~~~~~~h~ 260 (484)
T KOG0305|consen 189 NVLAVALG-QSVYLWSASSGSVTELCSFGEEL----VTSVKWSPDGSHLAVGTSDGTVQIWDV---KEQKKTRTLRGSHA 260 (484)
T ss_pred CeEEEEec-ceEEEEecCCCceEEeEecCCCc----eEEEEECCCCCEEEEeecCCeEEEEeh---hhccccccccCCcC
Confidence 45555555 89999998 2233333566 999999999999999999999999998 444444433 2 23
Q ss_pred eEEEeec--cceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce
Q psy13856 109 LTVYSTK--LTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT 179 (271)
Q Consensus 109 ~~~~~~~--~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 179 (271)
..+.+.. ...+. +.|.. ..... .....+.+|...|..++|++ |+.++|+|+.|+.+.|||....++
T Consensus 261 ~rvg~laW~~~~lssGsr~~~I~~~dvR~~~-~~~~~~~~H~qeVCgLkws~----d~~~lASGgnDN~~~Iwd~~~~~p 335 (484)
T KOG0305|consen 261 SRVGSLAWNSSVLSSGSRDGKILNHDVRISQ-HVVSTLQGHRQEVCGLKWSP----DGNQLASGGNDNVVFIWDGLSPEP 335 (484)
T ss_pred ceeEEEeccCceEEEecCCCcEEEEEEecch-hhhhhhhcccceeeeeEECC----CCCeeccCCCccceEeccCCCccc
Confidence 3333322 22222 22332 11110 12224788999999999999 799999999999999999976665
Q ss_pred eeeeeeccCCCCeEEEEEecC-CCEEEEEEC--CCcEEEEEeCCC
Q psy13856 180 WTPFIMNTFDDVVWNVSWSLT-GDILTVSCG--DNSVSLWKENTD 221 (271)
Q Consensus 180 ~~~~~~~~h~~~v~~v~~~~~-g~~l~s~s~--D~~v~iw~~~~~ 221 (271)
...+..|..+|.+++|+|- ..+||+|+. |+.|++||..++
T Consensus 336 --~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g 378 (484)
T KOG0305|consen 336 --KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG 378 (484)
T ss_pred --cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC
Confidence 7788999999999999994 678998775 999999999866
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.5e-18 Score=133.70 Aligned_cols=150 Identities=16% Similarity=0.133 Sum_probs=128.4
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc-----eeee-ccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST-----ISLL-QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~-~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
.+.+.+..+|...+|+|+.||.|++|.+ ++.+ ++|+.. |+++.|+.|+..+++++.|.++|+.-+
T Consensus 265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkG----vt~l~FSrD~SqiLS~sfD~tvRiHGl----- 335 (508)
T KOG0275|consen 265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKG----VTCLSFSRDNSQILSASFDQTVRIHGL----- 335 (508)
T ss_pred ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccC----eeEEEEccCcchhhcccccceEEEecc-----
Confidence 3567777899999999999999999998 4444 489999 999999999999999999999999887
Q ss_pred CceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc
Q psy13856 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV 178 (271)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 178 (271)
..+ +++++++||.+.|+...|.+ ||.++++++.||+|++|+..+.+
T Consensus 336 ----------------------------KSG--K~LKEfrGHsSyvn~a~ft~----dG~~iisaSsDgtvkvW~~Ktte 381 (508)
T KOG0275|consen 336 ----------------------------KSG--KCLKEFRGHSSYVNEATFTD----DGHHIISASSDGTVKVWHGKTTE 381 (508)
T ss_pred ----------------------------ccc--hhHHHhcCccccccceEEcC----CCCeEEEecCCccEEEecCcchh
Confidence 334 56777889999999999999 79999999999999999999998
Q ss_pred eeeeeeec--cCCCCeEEEEEecC-CCEEEEEECCCcEEEEEeC
Q psy13856 179 TWTPFIMN--TFDDVVWNVSWSLT-GDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 179 ~~~~~~~~--~h~~~v~~v~~~~~-g~~l~s~s~D~~v~iw~~~ 219 (271)
| ...+. +-.-+|+++..-|. ...++.+...++|+|-++.
T Consensus 382 C--~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q 423 (508)
T KOG0275|consen 382 C--LSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ 423 (508)
T ss_pred h--hhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc
Confidence 8 44443 34458889888774 5778888889999999886
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.7e-17 Score=126.55 Aligned_cols=140 Identities=19% Similarity=0.214 Sum_probs=110.7
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCC--eEEEEeCCCcEEEEEeecCCCCceeeccc
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLN--RSATSSFHEAAKHLGTVQSSSPACLQPKY 106 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~--~l~s~s~d~~i~~~d~~~~~~~~~~~~~~ 106 (271)
+|.++||||.|.+|+|||. +..+-.|.+. |+++.|.+.-. .|++|+.||.|.+|+.
T Consensus 52 s~~~~aSGssDetI~IYDm~k~~qlg~ll~Hags----itaL~F~~~~S~shLlS~sdDG~i~iw~~------------- 114 (362)
T KOG0294|consen 52 SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGS----ITALKFYPPLSKSHLLSGSDDGHIIIWRV------------- 114 (362)
T ss_pred cceeEeccCCCCcEEEEeccchhhhcceeccccc----eEEEEecCCcchhheeeecCCCcEEEEEc-------------
Confidence 7899999999999999999 7778889999 99999998665 8999999999999997
Q ss_pred eeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeec
Q psy13856 107 FKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMN 186 (271)
Q Consensus 107 ~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 186 (271)
+.|.++..+++|.+.|+.++.+| .+.+-++.+.|+.++.||+-.++. ....
T Consensus 115 ----------------------~~W~~~~slK~H~~~Vt~lsiHP----S~KLALsVg~D~~lr~WNLV~Gr~---a~v~ 165 (362)
T KOG0294|consen 115 ----------------------GSWELLKSLKAHKGQVTDLSIHP----SGKLALSVGGDQVLRTWNLVRGRV---AFVL 165 (362)
T ss_pred ----------------------CCeEEeeeecccccccceeEecC----CCceEEEEcCCceeeeehhhcCcc---ceee
Confidence 57899999999999999999999 699999999999999999977663 1111
Q ss_pred cCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 187 TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 187 ~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
........|.|+|.|.+++.+..+ .|-||.+++
T Consensus 166 ~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~ 198 (362)
T KOG0294|consen 166 NLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDN 198 (362)
T ss_pred ccCCcceeeEEcCCCCEEEEEecc-EEEEEeccc
Confidence 111122236666666655555433 355555543
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.9e-17 Score=126.47 Aligned_cols=185 Identities=16% Similarity=0.115 Sum_probs=139.5
Q ss_pred ccceecccCCCCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCC--eEEEEeCCCcEEEEEeec
Q psy13856 22 LEIETYTESPLRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLN--RSATSSFHEAAKHLGTVQ 95 (271)
Q Consensus 22 ~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~--~l~s~s~d~~i~~~d~~~ 95 (271)
++-.+++.....||..+++|+.|+.+++||+ ...+..|.++ |..+.|-+... .|++||+|.+++.||.
T Consensus 71 ~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v~~Hd~p----vkt~~wv~~~~~~cl~TGSWDKTlKfWD~-- 144 (347)
T KOG0647|consen 71 HDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQVAAHDAP----VKTCHWVPGMNYQCLVTGSWDKTLKFWDT-- 144 (347)
T ss_pred cCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeeeeecccc----eeEEEEecCCCcceeEecccccceeeccc--
Confidence 3444566666789999999999999999999 7788899999 99999987665 8999999999999999
Q ss_pred CCCCceeeccceeeEEEeeccce--ee-----eEEEE--eeCCceEEeEEecCC----CcceEEEEEccCCCCCCcEEEE
Q psy13856 96 SSSPACLQPKYFKLTVYSTKLTR--IL-----ILVRI--CGGDKWIEETKLENH----SDWVRDVAWAPSWGLSKCMIAS 162 (271)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~--l~-----~~v~i--~~~~~~~~~~~~~~h----~~~v~~v~~~p~~~~~~~~l~s 162 (271)
+....+.....+..+++.+..+ ++ +.|.+ ..++ ..+++.+ .-.+++|+..+ |.+..+.
T Consensus 145 -R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~----~te~k~~~SpLk~Q~R~va~f~----d~~~~al 215 (347)
T KOG0647|consen 145 -RSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENP----PTEFKRIESPLKWQTRCVACFQ----DKDGFAL 215 (347)
T ss_pred -CCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCC----cchhhhhcCcccceeeEEEEEe----cCCceEe
Confidence 6666777667777777766322 11 44444 2222 1122222 23578899888 5777799
Q ss_pred EeCCCeEEEEEcCCCceeeeeeeccCCC---------CeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 163 CSQDRKVIIWTSNDYVTWTPFIMNTFDD---------VVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 163 ~~~dg~i~iwd~~~~~~~~~~~~~~h~~---------~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
|+-+|++-+..+..+.......+.-|.. +|++|+|+|....|++++.||+..+||-+..
T Consensus 216 GsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 216 GSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred eeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence 9999999999998763322445555542 5788999999889999999999999997654
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.4e-17 Score=132.77 Aligned_cols=182 Identities=17% Similarity=0.162 Sum_probs=137.8
Q ss_pred eceeEeeccccccceecccCCCCCCCEEEEccCCCeEEeccc--------eee------------------ecccccccc
Q psy13856 11 CDGLLMTLKPTLEIETYTESPLRIGHTLISCDTQAHIGIRST--------ISL------------------LQGSVYLRR 64 (271)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~--------~~~------------------~~~h~~~~~ 64 (271)
+|-.|..+-...+...+...--.-|+++|.|..|..|.|||+ .-+ -.+|++.
T Consensus 168 HD~ilpafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTda-- 245 (463)
T KOG0270|consen 168 HDFILPAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDA-- 245 (463)
T ss_pred cceeccCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHH--
Confidence 344444443344444442222245789999999999999998 011 1268888
Q ss_pred ccceEEEEcCCC-CeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcc
Q psy13856 65 ESNKAGALSPKL-NRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDW 143 (271)
Q Consensus 65 ~~i~~~~~s~~~-~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~ 143 (271)
|.+++|+..- +.|||||.|.+|++||+ ..+ ++..++..|.+.
T Consensus 246 --vl~Ls~n~~~~nVLaSgsaD~TV~lWD~---------------------------------~~g--~p~~s~~~~~k~ 288 (463)
T KOG0270|consen 246 --VLALSWNRNFRNVLASGSADKTVKLWDV---------------------------------DTG--KPKSSITHHGKK 288 (463)
T ss_pred --HHHHHhccccceeEEecCCCceEEEEEc---------------------------------CCC--CcceehhhcCCc
Confidence 8888888743 58999999999999998 334 566677789999
Q ss_pred eEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCC-CEEEEEECCCcEEEEEeCCCC
Q psy13856 144 VRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTG-DILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 144 v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~v~iw~~~~~~ 222 (271)
|.++.|+|. .+.+|++|+.|+++.+.|.|...+ ....-...+.|-.++|+|.. ..++++..||+|+-+|++..+
T Consensus 289 Vq~l~wh~~---~p~~LLsGs~D~~V~l~D~R~~~~--s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~ 363 (463)
T KOG0270|consen 289 VQTLEWHPY---EPSVLLSGSYDGTVALKDCRDPSN--SGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG 363 (463)
T ss_pred eeEEEecCC---CceEEEeccccceEEeeeccCccc--cCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC
Confidence 999999998 789999999999999999997543 33344456789999999964 567778889999999999776
Q ss_pred ceeEEEEecccchhhh
Q psy13856 223 AWQCITEMGKTSEQRA 238 (271)
Q Consensus 223 ~~~~~~~~~~~~~~~~ 238 (271)
+++.+++.|..+..
T Consensus 364 --~~vwt~~AHd~~IS 377 (463)
T KOG0270|consen 364 --KPVWTLKAHDDEIS 377 (463)
T ss_pred --CceeEEEeccCCcc
Confidence 77888888876544
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=3.6e-17 Score=138.95 Aligned_cols=163 Identities=15% Similarity=0.142 Sum_probs=114.7
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-ceeeEEEeec-------cceee-----eEEEE-eeCCceE
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-YFKLTVYSTK-------LTRIL-----ILVRI-CGGDKWI 132 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~-------~~~l~-----~~v~i-~~~~~~~ 132 (271)
+++++.+|+|++||+|..-|.++++++. .....-.. .+...+.+.. .++|+ +.|++ +....+.
T Consensus 462 ~R~~~vSp~gqhLAsGDr~GnlrVy~Lq---~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~ 538 (1080)
T KOG1408|consen 462 FRALAVSPDGQHLASGDRGGNLRVYDLQ---ELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYD 538 (1080)
T ss_pred eEEEEECCCcceecccCccCceEEEEeh---hhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccc
Confidence 7889999999999999999999999984 22222111 2222222222 23333 44555 3333445
Q ss_pred EeEEecCCCcceEEEEEccCC---------------------------------------------CCCCcEEEEEeCCC
Q psy13856 133 EETKLENHSDWVRDVAWAPSW---------------------------------------------GLSKCMIASCSQDR 167 (271)
Q Consensus 133 ~~~~~~~h~~~v~~v~~~p~~---------------------------------------------~~~~~~l~s~~~dg 167 (271)
+++++.+|...|++|.|.-+. ++...++++++.|+
T Consensus 539 l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDr 618 (1080)
T KOG1408|consen 539 LVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDR 618 (1080)
T ss_pred hhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEeccc
Confidence 555666666666555542110 11467999999999
Q ss_pred eEEEEEcCCCceeeeeeec---cCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhh
Q psy13856 168 KVIIWTSNDYVTWTPFIMN---TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQR 237 (271)
Q Consensus 168 ~i~iwd~~~~~~~~~~~~~---~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 237 (271)
.|+||++.+++. .+.+. +|++....|...|.|-|+++.+.|.++.++|+-++ +|+.++-+|.+-+
T Consensus 619 nirif~i~sgKq--~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~V 686 (1080)
T KOG1408|consen 619 NIRIFDIESGKQ--VKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAV 686 (1080)
T ss_pred ceEEEeccccce--eeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchhe
Confidence 999999999886 55554 56778889999999999999999999999999888 7777777776443
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-17 Score=126.92 Aligned_cols=138 Identities=15% Similarity=0.111 Sum_probs=99.2
Q ss_pred EEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-----ceeeEEEeeccceee-----eEEEE-----eeCCce---E
Q psy13856 71 ALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-----YFKLTVYSTKLTRIL-----ILVRI-----CGGDKW---I 132 (271)
Q Consensus 71 ~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~-----~~v~i-----~~~~~~---~ 132 (271)
-....+.+|++++.|..|.+|+. + ++.+... .......+++|++++ ..|++ ..++.+ .
T Consensus 194 GiA~~~k~imsas~dt~i~lw~l---k-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~ 269 (420)
T KOG2096|consen 194 GIAGNAKYIMSASLDTKICLWDL---K-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVK 269 (420)
T ss_pred eecCCceEEEEecCCCcEEEEec---C-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhh
Confidence 33445678999999999999997 4 5555544 224456677788888 44444 334432 3
Q ss_pred EeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC----------------------cee----------
Q psy13856 133 EETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY----------------------VTW---------- 180 (271)
Q Consensus 133 ~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~----------------------~~~---------- 180 (271)
.+.+++||.+.|...+|+| +...+++.+.||++++||..-. ++.
T Consensus 270 rvf~LkGH~saV~~~aFsn----~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~ 345 (420)
T KOG2096|consen 270 RVFSLKGHQSAVLAAAFSN----SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDS 345 (420)
T ss_pred hhheeccchhheeeeeeCC----CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcE
Confidence 4567899999999999999 6999999999999999998530 000
Q ss_pred -------eee------------eeccCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q psy13856 181 -------TPF------------IMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 181 -------~~~------------~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~ 217 (271)
.++ ....|...|.+++|+++|+++++++ |..++++.
T Consensus 346 lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 346 LAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 000 0123667899999999999999887 77788875
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=136.82 Aligned_cols=152 Identities=14% Similarity=0.148 Sum_probs=114.0
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
.++..++||+.|++|+.-.++.|||+ ...+..-... +++++.+||.+..+++..||.|.+||+ +..
T Consensus 469 RSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapa----CyALa~spDakvcFsccsdGnI~vwDL---hnq 541 (705)
T KOG0639|consen 469 RSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPA----CYALAISPDAKVCFSCCSDGNIAVWDL---HNQ 541 (705)
T ss_pred eeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchh----hhhhhcCCccceeeeeccCCcEEEEEc---ccc
Confidence 34445689999999999999999999 1122222234 778999999999999999999999999 222
Q ss_pred ceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce
Q psy13856 100 ACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT 179 (271)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 179 (271)
..++.|.||.+.+.||..++ ||..|-+|+-|++||.||++.+..
T Consensus 542 --------------------------------~~VrqfqGhtDGascIdis~----dGtklWTGGlDntvRcWDlregrq 585 (705)
T KOG0639|consen 542 --------------------------------TLVRQFQGHTDGASCIDISK----DGTKLWTGGLDNTVRCWDLREGRQ 585 (705)
T ss_pred --------------------------------eeeecccCCCCCceeEEecC----CCceeecCCCccceeehhhhhhhh
Confidence 45666667777777777766 566777777777777777665321
Q ss_pred --------------------------------------eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 180 --------------------------------------WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 180 --------------------------------------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.....+.-|++.|.++.|.+.|+++++.+.|+-+..|....+
T Consensus 586 lqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG 665 (705)
T KOG0639|consen 586 LQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG 665 (705)
T ss_pred hhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCccc
Confidence 013445667889999999999999999999999999987666
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.8e-17 Score=125.24 Aligned_cols=115 Identities=18% Similarity=0.263 Sum_probs=97.8
Q ss_pred ceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceE
Q psy13856 67 NKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVR 145 (271)
Q Consensus 67 i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~ 145 (271)
|.+++||| ....++++|+|++||+|++. ..+.+.. +....|.++|.
T Consensus 30 IS~l~FSP~~~~~~~A~SWD~tVR~wevq--------------------------------~~g~~~~-ka~~~~~~PvL 76 (347)
T KOG0647|consen 30 ISALAFSPQADNLLAAGSWDGTVRIWEVQ--------------------------------NSGQLVP-KAQQSHDGPVL 76 (347)
T ss_pred hheeEeccccCceEEecccCCceEEEEEe--------------------------------cCCcccc-hhhhccCCCeE
Confidence 99999999 55577799999999999983 1121122 44456899999
Q ss_pred EEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCC--EEEEEECCCcEEEEEeCCC
Q psy13856 146 DVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGD--ILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~--~l~s~s~D~~v~iw~~~~~ 221 (271)
+++|+. ||..+++|+.|+.+++||+.++. ...+..|..+|.++.|-+... .|++||.|.+|++||.+..
T Consensus 77 ~v~Wsd----dgskVf~g~~Dk~~k~wDL~S~Q---~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~ 147 (347)
T KOG0647|consen 77 DVCWSD----DGSKVFSGGCDKQAKLWDLASGQ---VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS 147 (347)
T ss_pred EEEEcc----CCceEEeeccCCceEEEEccCCC---eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCC
Confidence 999999 79999999999999999999986 778889999999999987654 8999999999999999865
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.1e-17 Score=130.93 Aligned_cols=181 Identities=15% Similarity=0.167 Sum_probs=130.6
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc---------eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecC
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST---------ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQS 96 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~---------~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~ 96 (271)
...-|..+..++|+|+.-|.|-+||+ +..+..|... |.++.|+| +...+++.|.||+|++-|+
T Consensus 192 l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~----Vs~l~F~P~n~s~i~ssSyDGtiR~~D~--- 264 (498)
T KOG4328|consen 192 LAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGP----VSGLKFSPANTSQIYSSSYDGTIRLQDF--- 264 (498)
T ss_pred EEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCcc----ccceEecCCChhheeeeccCceeeeeee---
Confidence 33444456678999999999999999 6778899999 99999999 4568999999999999998
Q ss_pred CCCceeeccce-------eeEEEeec-cceee----eEEEE---eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEE
Q psy13856 97 SSPACLQPKYF-------KLTVYSTK-LTRIL----ILVRI---CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIA 161 (271)
Q Consensus 97 ~~~~~~~~~~~-------~~~~~~~~-~~~l~----~~v~i---~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~ 161 (271)
+.......... ...-+..+ ...++ +.+.+ ...+ .....+.-|...|.+|+++|. ...+|+
T Consensus 265 ~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~--s~~~~~~lh~kKI~sv~~NP~---~p~~la 339 (498)
T KOG4328|consen 265 EGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDG--SEYENLRLHKKKITSVALNPV---CPWFLA 339 (498)
T ss_pred cchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCC--ccchhhhhhhcccceeecCCC---Cchhee
Confidence 33222211111 11111111 11222 43333 2222 223445568889999999998 788999
Q ss_pred EEeCCCeEEEEEcCCCceee--eeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 162 SCSQDRKVIIWTSNDYVTWT--PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 162 s~~~dg~i~iwd~~~~~~~~--~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
+++.|++.+|||++...... ......|..+|.++.|+|.+-.|++.+.|..|+|||..
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 99999999999998754311 12345788999999999987779999999999999973
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.9e-16 Score=120.93 Aligned_cols=151 Identities=13% Similarity=0.154 Sum_probs=114.0
Q ss_pred eccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccce--eeEEEeeccceee-------eEEEE-
Q psy13856 56 LQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF--KLTVYSTKLTRIL-------ILVRI- 125 (271)
Q Consensus 56 ~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~l~-------~~v~i- 125 (271)
+....+. |.++.|+++|..+++++.|-++++||..++...+.+....+ ....+......+. .+|+.
T Consensus 10 f~~~~~~----i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 10 FRETNGK----INSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYL 85 (311)
T ss_pred cccCCCc----eeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEE
Confidence 3344455 99999999999999999999999999943333333333323 3344444433333 46666
Q ss_pred -eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEE
Q psy13856 126 -CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDIL 204 (271)
Q Consensus 126 -~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l 204 (271)
..++ +.++-|.||...|.+++.+|. ++.+++++.|++|++||++..++ ...+.....+ .++|+|+|-++
T Consensus 86 sl~dN--kylRYF~GH~~~V~sL~~sP~----~d~FlS~S~D~tvrLWDlR~~~c--qg~l~~~~~p--i~AfDp~GLif 155 (311)
T KOG1446|consen 86 SLHDN--KYLRYFPGHKKRVNSLSVSPK----DDTFLSSSLDKTVRLWDLRVKKC--QGLLNLSGRP--IAAFDPEGLIF 155 (311)
T ss_pred EeecC--ceEEEcCCCCceEEEEEecCC----CCeEEecccCCeEEeeEecCCCC--ceEEecCCCc--ceeECCCCcEE
Confidence 4455 789999999999999999995 79999999999999999998775 3333333333 48899999999
Q ss_pred EEEECCCcEEEEEeCC
Q psy13856 205 TVSCGDNSVSLWKENT 220 (271)
Q Consensus 205 ~s~s~D~~v~iw~~~~ 220 (271)
|++...+.|++||++.
T Consensus 156 A~~~~~~~IkLyD~Rs 171 (311)
T KOG1446|consen 156 ALANGSELIKLYDLRS 171 (311)
T ss_pred EEecCCCeEEEEEecc
Confidence 9999888999999975
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.6e-17 Score=123.92 Aligned_cols=156 Identities=16% Similarity=0.144 Sum_probs=127.0
Q ss_pred ccceecccCCCCCCCEEEEccCCCeEEeccc------eeeeccccccccccceEEEEcCCCC-eEEEEeCCCcEEEEEee
Q psy13856 22 LEIETYTESPLRIGHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSPKLN-RSATSSFHEAAKHLGTV 94 (271)
Q Consensus 22 ~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~~~d~~ 94 (271)
.++..-.++|..||+.+++.+. +++..||+ ...-.+|... |.++.|+|+-+ +|++|+.||.|++||.+
T Consensus 171 ~~ftsg~WspHHdgnqv~tt~d-~tl~~~D~RT~~~~~sI~dAHgq~----vrdlDfNpnkq~~lvt~gDdgyvriWD~R 245 (370)
T KOG1007|consen 171 HSFTSGAWSPHHDGNQVATTSD-STLQFWDLRTMKKNNSIEDAHGQR----VRDLDFNPNKQHILVTCGDDGYVRIWDTR 245 (370)
T ss_pred ceecccccCCCCccceEEEeCC-CcEEEEEccchhhhcchhhhhcce----eeeccCCCCceEEEEEcCCCccEEEEecc
Confidence 3345567788889999888877 99999999 3444688888 99999999765 78999999999999984
Q ss_pred cCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEc
Q psy13856 95 QSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTS 174 (271)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~ 174 (271)
... .+++++.+|..+|++|.|+|. ..+++++|+.|..|.+|..
T Consensus 246 --------------------------------~tk--~pv~el~~HsHWvW~VRfn~~---hdqLiLs~~SDs~V~Lsca 288 (370)
T KOG1007|consen 246 --------------------------------KTK--FPVQELPGHSHWVWAVRFNPE---HDQLILSGGSDSAVNLSCA 288 (370)
T ss_pred --------------------------------CCC--ccccccCCCceEEEEEEecCc---cceEEEecCCCceeEEEec
Confidence 223 678889999999999999997 6789999999999999987
Q ss_pred CCCc------------------------e---eeeeeeccCCCCeEEEEEec-CCCEEEEEECCCcEEEEEeC
Q psy13856 175 NDYV------------------------T---WTPFIMNTFDDVVWNVSWSL-TGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 175 ~~~~------------------------~---~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~v~iw~~~ 219 (271)
.... + -....+..|++.|++++|+. +.-++|+-+.||.+.|=.+.
T Consensus 289 ~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 289 SSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 5311 0 11335678999999999986 67788999999999887654
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-17 Score=131.15 Aligned_cols=127 Identities=17% Similarity=0.202 Sum_probs=110.8
Q ss_pred eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceE
Q psy13856 53 ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWI 132 (271)
Q Consensus 53 ~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~ 132 (271)
.+.+..|++. |+.+.||++|++||+++.|.+..+|.+. .+..++
T Consensus 217 ~qil~~htdE----VWfl~FS~nGkyLAsaSkD~Taiiw~v~--------------------------------~d~~~k 260 (519)
T KOG0293|consen 217 WQILQDHTDE----VWFLQFSHNGKYLASASKDSTAIIWIVV--------------------------------YDVHFK 260 (519)
T ss_pred hhhHhhCCCc----EEEEEEcCCCeeEeeccCCceEEEEEEe--------------------------------cCccee
Confidence 5667889999 9999999999999999999999899873 333457
Q ss_pred EeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeee-ccCCCCeEEEEEecCCCEEEEEECCC
Q psy13856 133 EETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIM-NTFDDVVWNVSWSLTGDILTVSCGDN 211 (271)
Q Consensus 133 ~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~v~~~~~g~~l~s~s~D~ 211 (271)
..+++.+|..+|..+.|+| |.+++++|+.|..+.+||..++.. ...+ .+|...+.+++|.|||..+++|+.|+
T Consensus 261 l~~tlvgh~~~V~yi~wSP----DdryLlaCg~~e~~~lwDv~tgd~--~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr 334 (519)
T KOG0293|consen 261 LKKTLVGHSQPVSYIMWSP----DDRYLLACGFDEVLSLWDVDTGDL--RHLYPSGLGFSVSSCAWCPDGFRFVTGSPDR 334 (519)
T ss_pred eeeeeecccCceEEEEECC----CCCeEEecCchHheeeccCCcchh--hhhcccCcCCCcceeEEccCCceeEecCCCC
Confidence 8889999999999999999 799999999999999999999885 2222 34567899999999999999999999
Q ss_pred cEEEEEeCCC
Q psy13856 212 SVSLWKENTD 221 (271)
Q Consensus 212 ~v~iw~~~~~ 221 (271)
++..||++.+
T Consensus 335 ~i~~wdlDgn 344 (519)
T KOG0293|consen 335 TIIMWDLDGN 344 (519)
T ss_pred cEEEecCCcc
Confidence 9999998743
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.6e-16 Score=126.87 Aligned_cols=174 Identities=10% Similarity=0.065 Sum_probs=128.8
Q ss_pred CEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecC-CCCceeecc-ce
Q psy13856 36 HTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQS-SSPACLQPK-YF 107 (271)
Q Consensus 36 ~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~-~~~~~~~~~-~~ 107 (271)
+.|||||.|.+|++||+ ..++..|.+. |.+++|+| .+..|++|+.|+++.+.|.++. ..+..++.. ..
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~----Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~V 332 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITHHGKK----VQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEV 332 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhhcCCc----eeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccce
Confidence 57999999999999999 6677788999 99999998 6679999999999999998521 122222222 12
Q ss_pred eeEEEeecc--ceee----eEEEE---eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc
Q psy13856 108 KLTVYSTKL--TRIL----ILVRI---CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV 178 (271)
Q Consensus 108 ~~~~~~~~~--~~l~----~~v~i---~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 178 (271)
....|.... .+++ |.++- ...+ +++.+++.|.+.|.++++++. ...++++++.|+.+++|++....
T Consensus 333 Ekv~w~~~se~~f~~~tddG~v~~~D~R~~~--~~vwt~~AHd~~ISgl~~n~~---~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 333 EKVAWDPHSENSFFVSTDDGTVYYFDIRNPG--KPVWTLKAHDDEISGLSVNIQ---TPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred EEEEecCCCceeEEEecCCceEEeeecCCCC--CceeEEEeccCCcceEEecCC---CCcceeeccccceEEEEeecCCC
Confidence 233333332 2223 66665 3344 789999999999999999986 67899999999999999998655
Q ss_pred eeeeeeeccCC---CCeEEEEEecCC-CEEEEEECCCcEEEEEeCCC
Q psy13856 179 TWTPFIMNTFD---DVVWNVSWSLTG-DILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 179 ~~~~~~~~~h~---~~v~~v~~~~~g-~~l~s~s~D~~v~iw~~~~~ 221 (271)
......|. +...|.++.|+- -+++.|+..+.++|||+.+.
T Consensus 408 ---~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~ 451 (463)
T KOG0270|consen 408 ---PKSVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTN 451 (463)
T ss_pred ---CcccccccccccceeecccCCCcceEEEecCccceEEEeecccC
Confidence 23333332 346677777764 45677777778999998765
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.3e-17 Score=127.89 Aligned_cols=175 Identities=16% Similarity=0.145 Sum_probs=118.6
Q ss_pred CCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCC-CeEEEEeCCCcEEEEEeecCCCCceeeccce-
Q psy13856 35 GHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKL-NRSATSSFHEAAKHLGTVQSSSPACLQPKYF- 107 (271)
Q Consensus 35 g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~- 107 (271)
+..++||+. .|.|||. ++.+..-.+. |.++.|+|.. ..|++|+.|++|.+||.+++...+.+-...-
T Consensus 159 ~~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dt----i~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRT 232 (433)
T KOG0268|consen 159 NSVFATCGE--QIDIWDEQRDNPVSSMSWGADS----ISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRT 232 (433)
T ss_pred cccccccCc--eeeecccccCCccceeecCCCc----eeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccc
Confidence 445555554 4566665 4445555555 8899999955 4788888999999999953332222222222
Q ss_pred eeEEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceee
Q psy13856 108 KLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWT 181 (271)
Q Consensus 108 ~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 181 (271)
+...|.+..-.|+ ..+.. +...--.++....+|.+.|.+|.|+| .|.-|++||.|.+|+||..+.+..
T Consensus 233 N~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsp----tG~EfvsgsyDksIRIf~~~~~~S-- 306 (433)
T KOG0268|consen 233 NTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSP----TGQEFVSGSYDKSIRIFPVNHGHS-- 306 (433)
T ss_pred cceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCC----CcchhccccccceEEEeecCCCcc--
Confidence 3344444322222 22222 11111156777889999999999999 599999999999999999987653
Q ss_pred eeeecc-CCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 182 PFIMNT-FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 182 ~~~~~~-h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
...+.. --+.|.||.|+.|.+|+++||+|+.|++|..+..
T Consensus 307 RdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~As 347 (433)
T KOG0268|consen 307 RDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKAS 347 (433)
T ss_pred hhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchh
Confidence 222211 1247999999999999999999999999997644
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.2e-16 Score=136.02 Aligned_cols=181 Identities=14% Similarity=0.084 Sum_probs=136.5
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc-----eeee---ccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeec
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST-----ISLL---QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQ 95 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~---~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~ 95 (271)
.....+...+.|++.+.|+..|+|.+|+. ...+ ..|.+. |++++....++.+++++.+|.++.|+.
T Consensus 449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~----V~gla~D~~n~~~vsa~~~Gilkfw~f-- 522 (910)
T KOG1539|consen 449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGE----VTGLAVDGTNRLLVSAGADGILKFWDF-- 522 (910)
T ss_pred cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCc----eeEEEecCCCceEEEccCcceEEEEec--
Confidence 44444444568999999999999999999 3344 478888 999999988899999999999999998
Q ss_pred CCCCceeeccce----eeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCC
Q psy13856 96 SSSPACLQPKYF----KLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQD 166 (271)
Q Consensus 96 ~~~~~~~~~~~~----~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d 166 (271)
+.......... +..+..-....++ -.|.+.+...-+.++.|.||.+.|++++||| ||++|++++.|
T Consensus 523 -~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~----DgrWlisasmD 597 (910)
T KOG1539|consen 523 -KKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP----DGRWLISASMD 597 (910)
T ss_pred -CCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCC----CCcEEEEeecC
Confidence 54444333322 2222222233333 3444422222267889999999999999999 79999999999
Q ss_pred CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC-CcEEEEEe
Q psy13856 167 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD-NSVSLWKE 218 (271)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-~~v~iw~~ 218 (271)
++|++||+-++.. +.. ..-..+..++.|+|+|.+||+...| .-|++|--
T Consensus 598 ~tIr~wDlpt~~l--ID~-~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsN 647 (910)
T KOG1539|consen 598 STIRTWDLPTGTL--IDG-LLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSN 647 (910)
T ss_pred CcEEEEeccCcce--eee-EecCCcceeeEECCCCCEEEEEEecCceEEEEEc
Confidence 9999999999875 222 2245688999999999999999988 67999964
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=5.4e-17 Score=129.41 Aligned_cols=170 Identities=16% Similarity=0.199 Sum_probs=135.6
Q ss_pred ccCCCCCCC-EEEEccCCCeEEeccc--------------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEE
Q psy13856 28 TESPLRIGH-TLISCDTQAHIGIRST--------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLG 92 (271)
Q Consensus 28 ~~~~~~~g~-~l~s~s~d~~i~lwd~--------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d 92 (271)
+...-++.. .++||+.|..|++|.+ ...+..|... |+++.|+|+|..|+||+.+|.+.+|-
T Consensus 18 s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~a----VN~vRf~p~gelLASg~D~g~v~lWk 93 (434)
T KOG1009|consen 18 SVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRA----VNVVRFSPDGELLASGGDGGEVFLWK 93 (434)
T ss_pred EEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcce----eEEEEEcCCcCeeeecCCCceEEEEE
Confidence 333334444 8999999999999988 5667889999 99999999999999999999998887
Q ss_pred eecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEE
Q psy13856 93 TVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172 (271)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iw 172 (271)
. ..-+.... -. .. + .....|...+.+.+|...|..++|+| ++.++++++.|..+++|
T Consensus 94 ~---~~~~~~~~--d~-e~-----~--------~~ke~w~v~k~lr~h~~diydL~Ws~----d~~~l~s~s~dns~~l~ 150 (434)
T KOG1009|consen 94 Q---GDVRIFDA--DT-EA-----D--------LNKEKWVVKKVLRGHRDDIYDLAWSP----DSNFLVSGSVDNSVRLW 150 (434)
T ss_pred e---cCcCCccc--cc-hh-----h--------hCccceEEEEEecccccchhhhhccC----CCceeeeeeccceEEEE
Confidence 6 21110000 00 00 0 01224677788889999999999999 79999999999999999
Q ss_pred EcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeE
Q psy13856 173 TSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQC 226 (271)
Q Consensus 173 d~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~ 226 (271)
|+..+.. ...+..|...|..++|.|.++++++-+.|...+.+.++..+.-.+
T Consensus 151 Dv~~G~l--~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~ 202 (434)
T KOG1009|consen 151 DVHAGQL--LAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKR 202 (434)
T ss_pred Eecccee--EeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeee
Confidence 9999986 778899999999999999999999999999888888776543333
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.9e-16 Score=118.88 Aligned_cols=212 Identities=12% Similarity=0.056 Sum_probs=141.0
Q ss_pred cceeEEeeceeEeeccccc---cceecccCC-----CCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEE
Q psy13856 4 KEWLLVSCDGLLMTLKPTL---EIETYTESP-----LRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGA 71 (271)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~ 71 (271)
..+|+.+=||.|...+-.. ..+.-...| +.|...+++|+.||.|+.+|+ ...+..|... |+++.
T Consensus 26 ~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~Dln~~~~~~igth~~~----i~ci~ 101 (323)
T KOG1036|consen 26 SDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTIVTGGLDGQVRRYDLNTGNEDQIGTHDEG----IRCIE 101 (323)
T ss_pred CcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceEEEeccCceEEEEEecCCcceeeccCCCc----eEEEE
Confidence 3444444488887754211 111111122 245667999999999999999 5667889999 99999
Q ss_pred EcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeec--cceee-----eEEEEeeCCce-EEe-EEecCCCc
Q psy13856 72 LSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTK--LTRIL-----ILVRICGGDKW-IEE-TKLENHSD 142 (271)
Q Consensus 72 ~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~l~-----~~v~i~~~~~~-~~~-~~~~~h~~ 142 (271)
+++....+++||+|++|++||. +..........+..+++.+ +..|+ ..+.+.+-+.. ... ..-..-.-
T Consensus 102 ~~~~~~~vIsgsWD~~ik~wD~---R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lky 178 (323)
T KOG1036|consen 102 YSYEVGCVISGSWDKTIKFWDP---RNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKY 178 (323)
T ss_pred eeccCCeEEEcccCccEEEEec---cccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccccchhhhcccccee
Confidence 9998889999999999999998 3333333333344555544 55544 34444111100 111 11112235
Q ss_pred ceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCcee--eeeeeccCCC---------CeEEEEEecCCCEEEEEECCC
Q psy13856 143 WVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTW--TPFIMNTFDD---------VVWNVSWSLTGDILTVSCGDN 211 (271)
Q Consensus 143 ~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~h~~---------~v~~v~~~~~g~~l~s~s~D~ 211 (271)
.+.+|++-|+ +.-++.++-||+|.+=.++..+.. ....+..|.. +|++++|+|-...|+||+.||
T Consensus 179 qtR~v~~~pn----~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG 254 (323)
T KOG1036|consen 179 QTRCVALVPN----GEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDG 254 (323)
T ss_pred EEEEEEEecC----CCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCc
Confidence 6889999994 778888999999998777654210 0334555532 799999999989999999999
Q ss_pred cEEEEEeCCCCceeE
Q psy13856 212 SVSLWKENTDGAWQC 226 (271)
Q Consensus 212 ~v~iw~~~~~~~~~~ 226 (271)
.|.+||+...+....
T Consensus 255 ~V~~Wd~~~rKrl~q 269 (323)
T KOG1036|consen 255 IVNIWDLFNRKRLKQ 269 (323)
T ss_pred eEEEccCcchhhhhh
Confidence 999999987744433
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-16 Score=128.29 Aligned_cols=195 Identities=14% Similarity=0.064 Sum_probs=146.4
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
..++.+......++++|+..+.|+|||+ .+.+++|... |+++.++-...+||+++..|-|.+..+ .++
T Consensus 81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~st----vt~v~YN~~DeyiAsvs~gGdiiih~~---~t~ 153 (673)
T KOG4378|consen 81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQST----VTYVDYNNTDEYIASVSDGGDIIIHGT---KTK 153 (673)
T ss_pred hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcce----eEEEEecCCcceeEEeccCCcEEEEec---ccC
Confidence 4455666566689999999999999999 7788999999 999999999999999999999988887 555
Q ss_pred ceeecccee------eEEEeeccceee------eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCC
Q psy13856 100 ACLQPKYFK------LTVYSTKLTRIL------ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQD 166 (271)
Q Consensus 100 ~~~~~~~~~------~~~~~~~~~~l~------~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d 166 (271)
.....+..+ ..-++...+.+. |.|.+ +-++.-....-.+.|..+...|+|+|. ...+|++.+.|
T Consensus 154 ~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfsps---ne~l~vsVG~D 230 (673)
T KOG4378|consen 154 QKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPS---NEALLVSVGYD 230 (673)
T ss_pred ccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCC---ccceEEEeccc
Confidence 444443221 222333333333 77888 333332333445679999999999997 68899999999
Q ss_pred CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccc
Q psy13856 167 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
.+|.+||.+.... .. ......+...|+|.++|.+|+.|...|.|..||++... .++..+..|.
T Consensus 231 kki~~yD~~s~~s--~~-~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~ 293 (673)
T KOG4378|consen 231 KKINIYDIRSQAS--TD-RLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHD 293 (673)
T ss_pred ceEEEeecccccc--cc-eeeecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecc
Confidence 9999999987553 22 22345688999999999999999999999999998542 3444444443
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.4e-15 Score=132.34 Aligned_cols=178 Identities=20% Similarity=0.206 Sum_probs=134.4
Q ss_pred CCCCCCEEEEccCCCeEEeccce------eeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 31 PLRIGHTLISCDTQAHIGIRSTI------SLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~~------~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
..++|.+|++|+.||.|++|+.. .++..+... |.+++. ++++|++|+.+++|..|....+.....+..
T Consensus 21 ~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~----v~~ia~--~s~~f~~~s~~~tv~~y~fps~~~~~iL~R 94 (933)
T KOG1274|consen 21 YDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGEL----VSSIAC--YSNHFLTGSEQNTVLRYKFPSGEEDTILAR 94 (933)
T ss_pred EcCCCCEEEEecCCCceEEeecCCcccCCchhhccCce----eEEEee--cccceEEeeccceEEEeeCCCCCccceeee
Confidence 34689999999999999999982 222225555 666655 456999999999999999876666666666
Q ss_pred cce--eeEEEeeccceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcC
Q psy13856 105 KYF--KLTVYSTKLTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSN 175 (271)
Q Consensus 105 ~~~--~~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 175 (271)
+.. ....++.+++.++ -.|++ ..+. .....+++|.++|.++.|+|+ +++||+.+-||.|++||+.
T Consensus 95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~--s~~~~lrgh~apVl~l~~~p~----~~fLAvss~dG~v~iw~~~ 168 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS--SQEKVLRGHDAPVLQLSYDPK----GNFLAVSSCDGKVQIWDLQ 168 (933)
T ss_pred eeccceEEEEecCCcEEEeecCceeEEEEecccc--chheeecccCCceeeeeEcCC----CCEEEEEecCceEEEEEcc
Confidence 654 4445555677777 56666 3333 467788999999999999994 9999999999999999998
Q ss_pred CCce-----------------------ee--------------eeee-------------ccCCCCeEEEEEecCCCEEE
Q psy13856 176 DYVT-----------------------WT--------------PFIM-------------NTFDDVVWNVSWSLTGDILT 205 (271)
Q Consensus 176 ~~~~-----------------------~~--------------~~~~-------------~~h~~~v~~v~~~~~g~~l~ 205 (271)
++.. |. +..+ ..+.+.+.++.|+|+|.|||
T Consensus 169 ~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiA 248 (933)
T KOG1274|consen 169 DGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIA 248 (933)
T ss_pred cchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEe
Confidence 6321 00 0111 11234588999999999999
Q ss_pred EEECCCcEEEEEeCC
Q psy13856 206 VSCGDNSVSLWKENT 220 (271)
Q Consensus 206 s~s~D~~v~iw~~~~ 220 (271)
+++-||.|.|||.++
T Consensus 249 As~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 249 ASTLDGQILVWNVDT 263 (933)
T ss_pred eeccCCcEEEEeccc
Confidence 999999999999984
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.3e-16 Score=122.58 Aligned_cols=152 Identities=16% Similarity=0.158 Sum_probs=129.4
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
.+.....+..|+.+++++.|.+-.+||+ +..+.+|... .+.+.-+|..+++++++.|.+.++||.+
T Consensus 274 vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~E----LtHcstHptQrLVvTsSrDtTFRLWDFR----- 344 (481)
T KOG0300|consen 274 VVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSE----LTHCSTHPTQRLVVTSSRDTTFRLWDFR----- 344 (481)
T ss_pred ceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchh----ccccccCCcceEEEEeccCceeEeccch-----
Confidence 3445556678999999999999999999 7889999998 8989999999999999999999999983
Q ss_pred ceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce
Q psy13856 100 ACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT 179 (271)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 179 (271)
.....+..|.||.+.|+++.|.. +..+++|+.|.+|++||+++.+.
T Consensus 345 -----------------------------eaI~sV~VFQGHtdtVTS~vF~~-----dd~vVSgSDDrTvKvWdLrNMRs 390 (481)
T KOG0300|consen 345 -----------------------------EAIQSVAVFQGHTDTVTSVVFNT-----DDRVVSGSDDRTVKVWDLRNMRS 390 (481)
T ss_pred -----------------------------hhcceeeeecccccceeEEEEec-----CCceeecCCCceEEEeeeccccC
Confidence 12256788999999999999997 67899999999999999998764
Q ss_pred eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 180 WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 180 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
. +..+ .-.++++.++.+..+.+++.--++..|++||++..
T Consensus 391 p-lATI-RtdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~ 430 (481)
T KOG0300|consen 391 P-LATI-RTDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGN 430 (481)
T ss_pred c-ceee-ecCCccceeEeecCCceEEeccCCceEEEEecCCC
Confidence 2 3333 34678999999988889998888899999999843
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.2e-17 Score=126.11 Aligned_cols=207 Identities=14% Similarity=0.068 Sum_probs=151.0
Q ss_pred cccceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEee-
Q psy13856 21 TLEIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTV- 94 (271)
Q Consensus 21 ~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~- 94 (271)
.+...++..........+.+++.|.+-+||.+ +..+.+|.+. |.+++|++.+.++++++.|++..+|...
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GS----VNsikfh~s~~L~lTaSGD~taHIW~~av 221 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGS----VNSIKFHNSGLLLLTASGDETAHIWKAAV 221 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccc----eeeEEeccccceEEEccCCcchHHHHHhh
Confidence 44455566665555568999999999999999 8889999999 9999999999999999999999998731
Q ss_pred cCCCCceeeccce--eeEEEeec--cceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEE
Q psy13856 95 QSSSPACLQPKYF--KLTVYSTK--LTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVI 170 (271)
Q Consensus 95 ~~~~~~~~~~~~~--~~~~~~~~--~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~ 170 (271)
............+ .......+ .....+..+.+...--.++..+.+|.+.|.+..|-. .+..+++++.|++..
T Consensus 222 ~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~----gg~Q~vTaSWDRTAn 297 (481)
T KOG0300|consen 222 NWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA----GGQQMVTASWDRTAN 297 (481)
T ss_pred cCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc----Ccceeeeeeccccce
Confidence 0000100000000 00000000 000101111100000146778899999999999998 699999999999999
Q ss_pred EEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhhhh
Q psy13856 171 IWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRAI 239 (271)
Q Consensus 171 iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 239 (271)
+||+++++. +..+.+|....+.++-+|..+++++++.|.+.++||++. ....+..+++|...+..
T Consensus 298 lwDVEtge~--v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe--aI~sV~VFQGHtdtVTS 362 (481)
T KOG0300|consen 298 LWDVETGEV--VNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE--AIQSVAVFQGHTDTVTS 362 (481)
T ss_pred eeeeccCce--eccccCcchhccccccCCcceEEEEeccCceeEeccchh--hcceeeeecccccceeE
Confidence 999999987 889999999999999999999999999999999999983 34566777888766543
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-16 Score=124.37 Aligned_cols=148 Identities=13% Similarity=0.145 Sum_probs=119.7
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc------------eeeeccccccccccceEEEEcCC-CCeEEEEeCCCcEEEEEe
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST------------ISLLQGSVYLRRESNKAGALSPK-LNRSATSSFHEAAKHLGT 93 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~------------~~~~~~h~~~~~~~i~~~~~s~~-~~~l~s~s~d~~i~~~d~ 93 (271)
..+.|+ |.+.|||||.|.+|.+|++ +..+.+|... |--++|+|. .+.|++++.|.+|.+|+.
T Consensus 87 i~w~Pf-nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rr----Vg~V~wHPtA~NVLlsag~Dn~v~iWnv 161 (472)
T KOG0303|consen 87 IDWCPF-NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRR----VGLVQWHPTAPNVLLSAGSDNTVSIWNV 161 (472)
T ss_pred cccCcc-CCceeecCCCCceEEEEECCCcccccCcccceEEEeeccee----EEEEeecccchhhHhhccCCceEEEEec
Confidence 344444 6778999999999999998 6778999999 999999995 468999999999999998
Q ss_pred ecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEE
Q psy13856 94 VQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT 173 (271)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd 173 (271)
. ++ +.+.++. |.+.|++++|+. ||.+|++.+.|+.|+|||
T Consensus 162 ---~------------------------------tg--eali~l~-hpd~i~S~sfn~----dGs~l~TtckDKkvRv~d 201 (472)
T KOG0303|consen 162 ---G------------------------------TG--EALITLD-HPDMVYSMSFNR----DGSLLCTTCKDKKVRVID 201 (472)
T ss_pred ---c------------------------------CC--ceeeecC-CCCeEEEEEecc----CCceeeeecccceeEEEc
Confidence 2 23 3344455 999999999999 799999999999999999
Q ss_pred cCCCceeeeeeeccCCC-CeEEEEEecCCCEEEEEE---CCCcEEEEEeCCC
Q psy13856 174 SNDYVTWTPFIMNTFDD-VVWNVSWSLTGDILTVSC---GDNSVSLWKENTD 221 (271)
Q Consensus 174 ~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s---~D~~v~iw~~~~~ 221 (271)
.+.++. +..-.+|.+ .-..+.|-.+|.++.+|- .+.++-+||...-
T Consensus 202 pr~~~~--v~e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl 251 (472)
T KOG0303|consen 202 PRRGTV--VSEGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNL 251 (472)
T ss_pred CCCCcE--eeecccccCCCcceeEEeccCceeeeccccccccceeccCcccc
Confidence 999886 455567765 345677888888555553 2788999998643
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.2e-15 Score=118.80 Aligned_cols=182 Identities=14% Similarity=0.138 Sum_probs=127.7
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeee--ccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEee-cCCCCceeec
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLL--QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTV-QSSSPACLQP 104 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~--~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~-~~~~~~~~~~ 104 (271)
|+-.++++.+.|.-|++||. ...+ ..|.+. .....+++|+|||..|++| ....|++||+. .++.-....+
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de-~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t 198 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDE-YTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTT 198 (406)
T ss_pred CccceeeeccccCceeeeeccccccccchhhhhhHHh-hhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhh
Confidence 67789999999999999998 2222 233332 1223589999999999876 67899999983 2222222222
Q ss_pred cce-----eeE----EEeec-cceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC-C
Q psy13856 105 KYF-----KLT----VYSTK-LTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ-D 166 (271)
Q Consensus 105 ~~~-----~~~----~~~~~-~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~-d 166 (271)
... ... .+++. .+.++ ..+-| ...+ .++..+.+|.+.|+.++|.+ +|+.|.+|+. |
T Consensus 199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~--~pl~llggh~gGvThL~~~e----dGn~lfsGaRk~ 272 (406)
T KOG2919|consen 199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGR--RPLQLLGGHGGGVTHLQWCE----DGNKLFSGARKD 272 (406)
T ss_pred hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCC--CceeeecccCCCeeeEEecc----CcCeecccccCC
Confidence 211 111 11222 33344 45555 3334 67888889999999999999 7899998886 7
Q ss_pred CeEEEEEcCCCceeeeeeeccCCC-CeEEEEE--ecCCCEEEEEECCCcEEEEEeCCCCc
Q psy13856 167 RKVIIWTSNDYVTWTPFIMNTFDD-VVWNVSW--SLTGDILTVSCGDNSVSLWKENTDGA 223 (271)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~h~~-~v~~v~~--~~~g~~l~s~s~D~~v~iw~~~~~~~ 223 (271)
-.|..||++..... +..+.+|.+ .-.+|-| .|++++|++|+.||.|++||++.-+.
T Consensus 273 dkIl~WDiR~~~~p-v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 273 DKILCWDIRYSRDP-VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred CeEEEEeehhccch-hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCC
Confidence 88999999986643 556777765 4455655 47899999999999999999987444
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-17 Score=139.75 Aligned_cols=164 Identities=15% Similarity=0.153 Sum_probs=137.7
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccc-
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKY- 106 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~- 106 (271)
.+..+|++|+.+|+|++||+ ++++.+|... +..++|+|-+.+.++|+.|+-+++||. +...|.....
T Consensus 80 ~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~----~~sv~f~P~~~~~a~gStdtd~~iwD~---Rk~Gc~~~~~s 152 (825)
T KOG0267|consen 80 TSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN----ITSVDFHPYGEFFASGSTDTDLKIWDI---RKKGCSHTYKS 152 (825)
T ss_pred cchhhhcccccCCceeeeehhhhhhhhhhhccccC----cceeeeccceEEeccccccccceehhh---hccCceeeecC
Confidence 45678999999999999999 7889999999 999999999999999999999999999 6666666553
Q ss_pred ----eeeEEEeeccceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcC
Q psy13856 107 ----FKLTVYSTKLTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSN 175 (271)
Q Consensus 107 ----~~~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 175 (271)
....-++++|++++ ..+++ ...+ +...+|++|+..+.++.|+| ..-++++|+.|+++++||++
T Consensus 153 ~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag--k~~~ef~~~e~~v~sle~hp----~e~Lla~Gs~d~tv~f~dle 226 (825)
T KOG0267|consen 153 HTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAG--KLSKEFKSHEGKVQSLEFHP----LEVLLAPGSSDRTVRFWDLE 226 (825)
T ss_pred CcceeEEEeecCCCceeeccCCcceeeeeccccc--ccccccccccccccccccCc----hhhhhccCCCCceeeeeccc
Confidence 34455667788888 77888 3345 78889999999999999999 47788999999999999999
Q ss_pred CCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCC
Q psy13856 176 DYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDN 211 (271)
Q Consensus 176 ~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 211 (271)
+-+. +.........|.+..|+|++..+++|..+.
T Consensus 227 tfe~--I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 227 TFEV--ISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeEE--eeccCCccCCceeeeecCCceeeecCchhh
Confidence 7554 445555677899999999999998887653
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.6e-16 Score=116.86 Aligned_cols=112 Identities=17% Similarity=0.143 Sum_probs=95.4
Q ss_pred eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceE
Q psy13856 53 ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWI 132 (271)
Q Consensus 53 ~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~ 132 (271)
+..+++|... +.|+.|+|+|+++|+|+.|..+.+||+. .+.
T Consensus 182 v~si~AH~sn----CicI~f~p~GryfA~GsADAlvSLWD~~-----------------------------------ELi 222 (313)
T KOG1407|consen 182 VQSIKAHPSN----CICIEFDPDGRYFATGSADALVSLWDVD-----------------------------------ELI 222 (313)
T ss_pred ccccccCCcc----eEEEEECCCCceEeeccccceeeccChh-----------------------------------Hhh
Confidence 5566788877 8899999999999999999999999982 224
Q ss_pred EeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC
Q psy13856 133 EETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD 210 (271)
Q Consensus 133 ~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D 210 (271)
+++.+..+.=+|..++|+. ||++||+|+.|..|-|=+++++.. +.. -.+.++.+.|+|+|...+||.+++|
T Consensus 223 C~R~isRldwpVRTlSFS~----dg~~lASaSEDh~IDIA~vetGd~--~~e-I~~~~~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 223 CERCISRLDWPVRTLSFSH----DGRMLASASEDHFIDIAEVETGDR--VWE-IPCEGPTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred hheeeccccCceEEEEecc----CcceeeccCccceEEeEecccCCe--EEE-eeccCCceeEEecCCCceeeEEecC
Confidence 6666777888999999999 799999999999999999999874 333 3477899999999999999988875
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=2e-16 Score=134.46 Aligned_cols=180 Identities=14% Similarity=0.073 Sum_probs=135.7
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcC---CCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSP---KLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~---~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
......|+|+.||+|..-|++|+|++ +..+.+|... |.|+.|+. ..++||+++.|.-|.++|.- +.
T Consensus 463 R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesE----ilcLeyS~p~~~~kLLASasrdRlIHV~Dv~--rn 536 (1080)
T KOG1408|consen 463 RALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESE----ILCLEYSFPVLTNKLLASASRDRLIHVYDVK--RN 536 (1080)
T ss_pred EEEEECCCcceecccCccCceEEEEehhhhhhhheecccce----eEEEeecCchhhhHhhhhccCCceEEEEecc--cc
Confidence 34444569999999999999999999 5677899998 99999985 34689999999999999973 11
Q ss_pred Cceeecc-c---------e-----eeEEEeec---------------------------------------cceee----
Q psy13856 99 PACLQPK-Y---------F-----KLTVYSTK---------------------------------------LTRIL---- 120 (271)
Q Consensus 99 ~~~~~~~-~---------~-----~~~~~~~~---------------------------------------~~~l~---- 120 (271)
-..+++. . + .....++. .++++
T Consensus 537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ 616 (1080)
T KOG1408|consen 537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ 616 (1080)
T ss_pred cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence 1111100 0 0 00000000 11111
Q ss_pred -eEEEE--eeCCceEEeEEecC---CCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEE
Q psy13856 121 -ILVRI--CGGDKWIEETKLEN---HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWN 194 (271)
Q Consensus 121 -~~v~i--~~~~~~~~~~~~~~---h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~ 194 (271)
+.|+| ...+ +..+.|++ |++..-.+...| .+.|+++.+.|+++.++|..++++ +..+.+|...|+.
T Consensus 617 Drnirif~i~sg--Kq~k~FKgs~~~eG~lIKv~lDP----SgiY~atScsdktl~~~Df~sgEc--vA~m~GHsE~VTG 688 (1080)
T KOG1408|consen 617 DRNIRIFDIESG--KQVKSFKGSRDHEGDLIKVILDP----SGIYLATSCSDKTLCFVDFVSGEC--VAQMTGHSEAVTG 688 (1080)
T ss_pred ccceEEEecccc--ceeeeecccccCCCceEEEEECC----CccEEEEeecCCceEEEEeccchh--hhhhcCcchheee
Confidence 55555 3344 44555644 667788899999 699999999999999999999998 8899999999999
Q ss_pred EEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 195 VSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 195 v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
+.|.+|.++|++.+.||.|.+|.+..
T Consensus 689 ~kF~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 689 VKFLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred eeecccchhheeecCCceEEEEECch
Confidence 99999999999999999999999853
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.6e-16 Score=123.85 Aligned_cols=178 Identities=18% Similarity=0.135 Sum_probs=130.0
Q ss_pred CCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
...+|..|++|+.||++|+|++ +.....|... |.+++|+|||+.|++.+.| ..++|+. .++.++...
T Consensus 152 f~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~e----V~DL~FS~dgk~lasig~d-~~~VW~~---~~g~~~a~~ 223 (398)
T KOG0771|consen 152 FNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAE----VKDLDFSPDGKFLASIGAD-SARVWSV---NTGAALARK 223 (398)
T ss_pred EcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCc----cccceeCCCCcEEEEecCC-ceEEEEe---ccCchhhhc
Confidence 3468899999999999999996 4455677777 9999999999999999999 8889999 555444333
Q ss_pred c-------eeeEEEeecc---c-eee------eEEEE-----eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEE
Q psy13856 106 Y-------FKLTVYSTKL---T-RIL------ILVRI-----CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASC 163 (271)
Q Consensus 106 ~-------~~~~~~~~~~---~-~l~------~~v~i-----~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~ 163 (271)
. +..+-|..+. . +++ +.+.. +..+.+-..+........|++++.++ +|++++.|
T Consensus 224 t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~----dGkf~AlG 299 (398)
T KOG0771|consen 224 TPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSD----DGKFLALG 299 (398)
T ss_pred CCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcC----CCcEEEEe
Confidence 1 2333333333 1 122 22222 11111111111222335799999999 79999999
Q ss_pred eCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 164 SQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 164 ~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+.||.|.|++..+.+.. ...-+.|...|+.+.|+|+.+++++.+.|.+..+..+.-+
T Consensus 300 T~dGsVai~~~~~lq~~-~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 300 TMDGSVAIYDAKSLQRL-QYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred ccCCcEEEEEeceeeee-EeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEeec
Confidence 99999999999887652 3344689999999999999999999999999999988753
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.3e-16 Score=130.46 Aligned_cols=179 Identities=21% Similarity=0.286 Sum_probs=138.9
Q ss_pred ccceecccCCCCCCCEEEEccCC-----CeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEE
Q psy13856 22 LEIETYTESPLRIGHTLISCDTQ-----AHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHL 91 (271)
Q Consensus 22 ~~~~~~~~~~~~~g~~l~s~s~d-----~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~ 91 (271)
+-.++|.....|+|+++||++.. ..|++|+. .+.+.+|.-. |+.++||||+++|+++|.|.++.+|
T Consensus 524 HGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLT----VT~l~FSpdg~~LLsvsRDRt~sl~ 599 (764)
T KOG1063|consen 524 HGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLT----VTRLAFSPDGRYLLSVSRDRTVSLY 599 (764)
T ss_pred CceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceE----EEEEEECCCCcEEEEeecCceEEee
Confidence 34667777788899999999864 37899998 6779999999 9999999999999999999999999
Q ss_pred EeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEE
Q psy13856 92 GTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII 171 (271)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~i 171 (271)
...+ ...- . ......+.|+.-|+++.|+| ++.+|+|+|.|.+|++
T Consensus 600 ~~~~---~~~~--------------------------e--~~fa~~k~HtRIIWdcsW~p----de~~FaTaSRDK~VkV 644 (764)
T KOG1063|consen 600 EVQE---DIKD--------------------------E--FRFACLKAHTRIIWDCSWSP----DEKYFATASRDKKVKV 644 (764)
T ss_pred eeec---ccch--------------------------h--hhhccccccceEEEEcccCc----ccceeEEecCCceEEE
Confidence 9721 1100 0 11233678999999999999 7999999999999999
Q ss_pred EEcCCC--ceeeeeeeccCCCCeEEEEEecC-----CCEEEEEECCCcEEEEEeC------CCCceeEEEEecccchhhh
Q psy13856 172 WTSNDY--VTWTPFIMNTFDDVVWNVSWSLT-----GDILTVSCGDNSVSLWKEN------TDGAWQCITEMGKTSEQRA 238 (271)
Q Consensus 172 wd~~~~--~~~~~~~~~~h~~~v~~v~~~~~-----g~~l~s~s~D~~v~iw~~~------~~~~~~~~~~~~~~~~~~~ 238 (271)
|..... ..........+..+|+.++|.|- +..++.|-..|.|.+|... +.+.+....++..+-....
T Consensus 645 W~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 724 (764)
T KOG1063|consen 645 WEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDS 724 (764)
T ss_pred EeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHH
Confidence 999876 33212244568889999999873 3478888899999999976 4455666666666555555
Q ss_pred h
Q psy13856 239 I 239 (271)
Q Consensus 239 ~ 239 (271)
+
T Consensus 725 a 725 (764)
T KOG1063|consen 725 A 725 (764)
T ss_pred h
Confidence 4
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.4e-17 Score=123.95 Aligned_cols=160 Identities=20% Similarity=0.246 Sum_probs=133.4
Q ss_pred eecccCCC-CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 25 ETYTESPL-RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 25 ~~~~~~~~-~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
.....+|. |+|-+|++++.|+.--+-+- +.++.+|.+. |++..+..+..+.++++.|-+-++||..
T Consensus 18 vdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkga----vw~~~l~~na~~aasaaadftakvw~a~---- 89 (334)
T KOG0278|consen 18 VDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGA----VWSATLNKNATRAASAAADFTAKVWDAV---- 89 (334)
T ss_pred eEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcc----eeeeecCchhhhhhhhcccchhhhhhhh----
Confidence 33444444 79999999999998766654 9999999999 9999999998999999999999999983
Q ss_pred CceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc
Q psy13856 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV 178 (271)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 178 (271)
++ ..+++|. |..-|.+++|+. |.++|++|+.+..+++||++.++
T Consensus 90 -----------------------------tg--delhsf~-hkhivk~~af~~----ds~~lltgg~ekllrvfdln~p~ 133 (334)
T KOG0278|consen 90 -----------------------------TG--DELHSFE-HKHIVKAVAFSQ----DSNYLLTGGQEKLLRVFDLNRPK 133 (334)
T ss_pred -----------------------------hh--hhhhhhh-hhheeeeEEecc----cchhhhccchHHHhhhhhccCCC
Confidence 22 2334444 888999999999 79999999999999999998876
Q ss_pred eeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 179 TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 179 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
.. ...+.+|.+.|..+.|....+.++++++|++|++||.+++ ..+.++.-
T Consensus 134 Ap-p~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTg---t~v~sL~~ 183 (334)
T KOG0278|consen 134 AP-PKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTG---TEVQSLEF 183 (334)
T ss_pred CC-chhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccC---cEEEEEec
Confidence 42 6778999999999999988888888899999999999988 55555433
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=134.65 Aligned_cols=140 Identities=15% Similarity=0.220 Sum_probs=116.4
Q ss_pred CCeEEeccc----------eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEE
Q psy13856 44 QAHIGIRST----------ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVY 112 (271)
Q Consensus 44 d~~i~lwd~----------~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 112 (271)
-|.|-||++ +-.+.. ... |+++.|.| |...|+.++.||.|++|.+. .+..-+
T Consensus 602 gG~iai~el~~PGrLPDgv~p~l~N-gt~----vtDl~WdPFD~~rLAVa~ddg~i~lWr~~---a~gl~e--------- 664 (1012)
T KOG1445|consen 602 GGVIAIYELNEPGRLPDGVMPGLFN-GTL----VTDLHWDPFDDERLAVATDDGQINLWRLT---ANGLPE--------- 664 (1012)
T ss_pred CceEEEEEcCCCCCCCccccccccc-Cce----eeecccCCCChHHeeecccCceEEEEEec---cCCCCc---------
Confidence 389999998 222222 234 78999999 77899999999999999983 222211
Q ss_pred eeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCe
Q psy13856 113 STKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVV 192 (271)
Q Consensus 113 ~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v 192 (271)
....+...+.+|...|+++.|+|- -.+.|+++++|-+|++||+++... ...+.+|.+.|
T Consensus 665 ----------------~~~tPe~~lt~h~eKI~slRfHPL---AadvLa~asyd~Ti~lWDl~~~~~--~~~l~gHtdqI 723 (1012)
T KOG1445|consen 665 ----------------NEMTPEKILTIHGEKITSLRFHPL---AADVLAVASYDSTIELWDLANAKL--YSRLVGHTDQI 723 (1012)
T ss_pred ----------------ccCCcceeeecccceEEEEEecch---hhhHhhhhhccceeeeeehhhhhh--hheeccCcCce
Confidence 122567778899999999999997 678999999999999999999876 66789999999
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 193 WNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 193 ~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
..++|+|+|+.+|+.+.||+|++|+.++.
T Consensus 724 f~~AWSpdGr~~AtVcKDg~~rVy~Prs~ 752 (1012)
T KOG1445|consen 724 FGIAWSPDGRRIATVCKDGTLRVYEPRSR 752 (1012)
T ss_pred eEEEECCCCcceeeeecCceEEEeCCCCC
Confidence 99999999999999999999999999754
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.2e-16 Score=132.68 Aligned_cols=163 Identities=15% Similarity=0.184 Sum_probs=129.4
Q ss_pred ceeEeeccccccceecccCCCCCCCEEEEccCCCeEEeccc------------eeeeccccccccccceEEEEcC-CCCe
Q psy13856 12 DGLLMTLKPTLEIETYTESPLRIGHTLISCDTQAHIGIRST------------ISLLQGSVYLRRESNKAGALSP-KLNR 78 (271)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~------------~~~~~~h~~~~~~~i~~~~~s~-~~~~ 78 (271)
||.+..+.....+-.+.+.|+ |.+.||.++.||.|++|.+ ...+..|... |+++.|+| ....
T Consensus 618 Dgv~p~l~Ngt~vtDl~WdPF-D~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eK----I~slRfHPLAadv 692 (1012)
T KOG1445|consen 618 DGVMPGLFNGTLVTDLHWDPF-DDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEK----ITSLRFHPLAADV 692 (1012)
T ss_pred cccccccccCceeeecccCCC-ChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccce----EEEEEecchhhhH
Confidence 555555655556667888887 7788999999999999998 5678899999 99999999 4468
Q ss_pred EEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCc
Q psy13856 79 SATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158 (271)
Q Consensus 79 l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 158 (271)
|++++.|.+|++||+. .. .....+.+|.+.|.+++|+| +|+
T Consensus 693 La~asyd~Ti~lWDl~---------------------------------~~--~~~~~l~gHtdqIf~~AWSp----dGr 733 (1012)
T KOG1445|consen 693 LAVASYDSTIELWDLA---------------------------------NA--KLYSRLVGHTDQIFGIAWSP----DGR 733 (1012)
T ss_pred hhhhhccceeeeeehh---------------------------------hh--hhhheeccCcCceeEEEECC----CCc
Confidence 9999999999999982 22 34456789999999999999 799
Q ss_pred EEEEEeCCCeEEEEEcCCCceeeeeeeccC-CCCeEEEEEecCCCEEEEEECCC----cEEEEEeC
Q psy13856 159 MIASCSQDRKVIIWTSNDYVTWTPFIMNTF-DDVVWNVSWSLTGDILTVSCGDN----SVSLWKEN 219 (271)
Q Consensus 159 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~~v~~~~~g~~l~s~s~D~----~v~iw~~~ 219 (271)
.+|+.+.||++++|..+..+.. +..-.+- ...--.+.|.-+|+++++.+.|. .|.+||..
T Consensus 734 ~~AtVcKDg~~rVy~Prs~e~p-v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq 798 (1012)
T KOG1445|consen 734 RIATVCKDGTLRVYEPRSREQP-VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQ 798 (1012)
T ss_pred ceeeeecCceEEEeCCCCCCCc-cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhh
Confidence 9999999999999999887631 2211111 23456788999999998888764 57788764
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.4e-15 Score=121.75 Aligned_cols=141 Identities=17% Similarity=0.124 Sum_probs=105.9
Q ss_pred CCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceee
Q psy13856 35 GHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKL 109 (271)
Q Consensus 35 g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~ 109 (271)
+..++||..|++||+||. ......+. . |+++..++++..+.+++.|.++++.|. ++......+
T Consensus 312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~----vtSl~ls~~g~~lLsssRDdtl~viDl---Rt~eI~~~~---- 379 (459)
T KOG0288|consen 312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-R----VTSLDLSMDGLELLSSSRDDTLKVIDL---RTKEIRQTF---- 379 (459)
T ss_pred ceeeeecccccceEEEeccCCceeeEeecCc-c----eeeEeeccCCeEEeeecCCCceeeeec---ccccEEEEe----
Confidence 445667777788888885 34444444 5 899999999999999999999999998 333222210
Q ss_pred EEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccC-
Q psy13856 110 TVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTF- 188 (271)
Q Consensus 110 ~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h- 188 (271)
.......+| ..+.+.|+| ++.|+++||.||.|+||++.++++ ...+...
T Consensus 380 ----------------------sA~g~k~as--DwtrvvfSp----d~~YvaAGS~dgsv~iW~v~tgKl--E~~l~~s~ 429 (459)
T KOG0288|consen 380 ----------------------SAEGFKCAS--DWTRVVFSP----DGSYVAAGSADGSVYIWSVFTGKL--EKVLSLST 429 (459)
T ss_pred ----------------------ecccccccc--ccceeEECC----CCceeeeccCCCcEEEEEccCceE--EEEeccCC
Confidence 011111122 378899999 799999999999999999999887 3443332
Q ss_pred -CCCeEEEEEecCCCEEEEEECCCcEEEEE
Q psy13856 189 -DDVVWNVSWSLTGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 189 -~~~v~~v~~~~~g~~l~s~s~D~~v~iw~ 217 (271)
...|++++|+|.|..|++++.++.+.+|.
T Consensus 430 s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 430 SNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred CCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 23799999999999999999999999993
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-15 Score=118.05 Aligned_cols=159 Identities=14% Similarity=0.151 Sum_probs=108.1
Q ss_pred eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCC--CCceeecc---ce-eeEEEeeccceee------
Q psy13856 53 ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSS--SPACLQPK---YF-KLTVYSTKLTRIL------ 120 (271)
Q Consensus 53 ~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~--~~~~~~~~---~~-~~~~~~~~~~~l~------ 120 (271)
...+++|.+. |++++|+.||++|++++.|++|++|++.+.. .-++++.. .+ +...|+++.+.++
T Consensus 79 ~~~LKgH~~~----vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g 154 (420)
T KOG2096|consen 79 VSVLKGHKKE----VTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRG 154 (420)
T ss_pred hhhhhccCCc----eeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccC
Confidence 6778999999 9999999999999999999999999985422 12333322 22 4455666654443
Q ss_pred eEEEE-----eeCCce--EEeE-----EecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc----------
Q psy13856 121 ILVRI-----CGGDKW--IEET-----KLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV---------- 178 (271)
Q Consensus 121 ~~v~i-----~~~~~~--~~~~-----~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~---------- 178 (271)
..+++ ..++.. ..+. .-+.|...+..+-... .+.+|++++.|..|.+|+++...
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~----~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~ 230 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAG----NAKYIMSASLDTKICLWDLKGQLLQSIDTNQSS 230 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecC----CceEEEEecCCCcEEEEecCCceeeeecccccc
Confidence 33333 111211 1110 1122444455555544 47788888888888888876300
Q ss_pred -------------------------------------eeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 179 -------------------------------------TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 179 -------------------------------------~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
......+.+|.++|..++|+++...+++.|.||+.+|||.+
T Consensus 231 n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 231 NYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred ccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 01134577999999999999999999999999999999975
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.7e-15 Score=121.55 Aligned_cols=183 Identities=14% Similarity=0.076 Sum_probs=137.7
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc-----e-ee------e-----------ccccccccccceEEEEcCCCCeEE
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST-----I-SL------L-----------QGSVYLRRESNKAGALSPKLNRSA 80 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~-~~------~-----------~~h~~~~~~~i~~~~~s~~~~~l~ 80 (271)
....+....+|+.+.++++.|++|.=|++ . .. + ++|... +.+++.|+||++|+
T Consensus 143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~ke----il~~avS~Dgkyla 218 (479)
T KOG0299|consen 143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKE----ILTLAVSSDGKYLA 218 (479)
T ss_pred CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccce----eEEEEEcCCCcEEE
Confidence 34445555679999999999999999998 0 11 1 144444 89999999999999
Q ss_pred EEeCCCcEEEEEeecCCCCceeecc-ceeeEEEeec-----cceee----eEEEEeeCCceEEeEEecCCCcceEEEEEc
Q psy13856 81 TSSFHEAAKHLGTVQSSSPACLQPK-YFKLTVYSTK-----LTRIL----ILVRICGGDKWIEETKLENHSDWVRDVAWA 150 (271)
Q Consensus 81 s~s~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~-----~~~l~----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~ 150 (271)
+|+.|..|.+|+. .+.+-++.+ .+...+.+.. .+++. +.++++.-.....+.++.+|.+.|.+|.-.
T Consensus 219 tgg~d~~v~Iw~~---~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL 295 (479)
T KOG0299|consen 219 TGGRDRHVQIWDC---DTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDAL 295 (479)
T ss_pred ecCCCceEEEecC---cccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeechh
Confidence 9999999999999 555555553 3444443333 22232 777774434446778889999999999877
Q ss_pred cCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 151 PSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 151 p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
. -.+.+..|+.|+++++|++.... ..++.+|.+.+-|++|-.+ ..+++||.||.|.+|.+-..
T Consensus 296 ~----reR~vtVGgrDrT~rlwKi~ees---qlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK 358 (479)
T KOG0299|consen 296 S----RERCVTVGGRDRTVRLWKIPEES---QLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK 358 (479)
T ss_pred c----ccceEEeccccceeEEEeccccc---eeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc
Confidence 6 26677777799999999995433 5577889999999999755 67899999999999998654
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.5e-15 Score=123.16 Aligned_cols=156 Identities=13% Similarity=0.052 Sum_probs=118.8
Q ss_pred CCCCCCCEEEEccCCCeEEeccc--------------eeeeccccccccccceEEEEcCC--CCeEEEEeCCCcEEEEEe
Q psy13856 30 SPLRIGHTLISCDTQAHIGIRST--------------ISLLQGSVYLRRESNKAGALSPK--LNRSATSSFHEAAKHLGT 93 (271)
Q Consensus 30 ~~~~~g~~l~s~s~d~~i~lwd~--------------~~~~~~h~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~~~d~ 93 (271)
...-||.+|+|||.||.|.+|++ +..+..|+-. |+++...+. ..+++|+|.|.++++||+
T Consensus 130 ~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~Htls----ITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 130 KFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLS----ITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred EEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcce----eEEEEecCCCccceEEEecCCceEEEEEe
Confidence 34468999999999999999998 6778889988 999887764 358999999999999999
Q ss_pred ecCCCCceeeccceeeEEEe----eccceee-----eEEEE------e------------eCCceEEeEEecCCCc--ce
Q psy13856 94 VQSSSPACLQPKYFKLTVYS----TKLTRIL-----ILVRI------C------------GGDKWIEETKLENHSD--WV 144 (271)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~----~~~~~l~-----~~v~i------~------------~~~~~~~~~~~~~h~~--~v 144 (271)
..+..+....++..+.+ +..+.+. |.|.+ . ..+ .....+.||.+ .|
T Consensus 206 ---S~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~--t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 206 ---SLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEEN--TQINVLVGHENESAI 280 (476)
T ss_pred ---ccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCccccccccccccccc--ceeeeeccccCCcce
Confidence 77777766644332222 2233322 44433 0 112 34567788988 99
Q ss_pred EEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecC
Q psy13856 145 RDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLT 200 (271)
Q Consensus 145 ~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~ 200 (271)
+|++.+. |+.+|++|+.||.++|||.....+ ++.+....++|+.+.+.|-
T Consensus 281 TcLais~----DgtlLlSGd~dg~VcvWdi~S~Q~--iRtl~~~kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 281 TCLAIST----DGTLLLSGDEDGKVCVWDIYSKQC--IRTLQTSKGPVTNLQINPL 330 (476)
T ss_pred eEEEEec----CccEEEeeCCCCCEEEEecchHHH--HHHHhhhccccceeEeecc
Confidence 9999999 899999999999999999998776 5555556788998888664
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=4.6e-15 Score=115.02 Aligned_cols=177 Identities=12% Similarity=0.130 Sum_probs=131.7
Q ss_pred CCCCCCEEEEccCCCeEEeccc--------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCcee
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST--------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACL 102 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~ 102 (271)
..|-.+.|++|+.|++|+++|+ .+.+ ..... |.++.|+|.|.+|+.|....++++||+ ++-+|.
T Consensus 180 FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~----vrsiSfHPsGefllvgTdHp~~rlYdv---~T~Qcf 251 (430)
T KOG0640|consen 180 FHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEP----VRSISFHPSGEFLLVGTDHPTLRLYDV---NTYQCF 251 (430)
T ss_pred ecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccce----eeeEeecCCCceEEEecCCCceeEEec---cceeEe
Confidence 4467889999999999999999 2222 23344 899999999999999999999999999 776665
Q ss_pred ecc----ce----eeEEEeeccceee-----eEEEEeeCCceEEeEEe-cCCC-cceEEEEEccCCCCCCcEEEEEeCCC
Q psy13856 103 QPK----YF----KLTVYSTKLTRIL-----ILVRICGGDKWIEETKL-ENHS-DWVRDVAWAPSWGLSKCMIASCSQDR 167 (271)
Q Consensus 103 ~~~----~~----~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~-~~h~-~~v~~v~~~p~~~~~~~~l~s~~~dg 167 (271)
-.. .+ ...-++..++..+ |.|++++.-.-+++.++ +.|. ..|.+..|.. ++.|+++.+.|.
T Consensus 252 vsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftk----n~kyiLsSG~DS 327 (430)
T KOG0640|consen 252 VSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTK----NGKYILSSGKDS 327 (430)
T ss_pred eecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEcc----CCeEEeecCCcc
Confidence 332 22 3333444455544 88888332222566666 3464 5688999998 599999999999
Q ss_pred eEEEEEcCCCce----------------------------------------ee-------eeeeccCCCCeEEEEEecC
Q psy13856 168 KVIIWTSNDYVT----------------------------------------WT-------PFIMNTFDDVVWNVSWSLT 200 (271)
Q Consensus 168 ~i~iwd~~~~~~----------------------------------------~~-------~~~~~~h~~~v~~v~~~~~ 200 (271)
.+++|.+.++++ |. ...-.+|.+++..+.=+|.
T Consensus 328 ~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~ 407 (430)
T KOG0640|consen 328 TVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPV 407 (430)
T ss_pred eeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCC
Confidence 999999987543 10 0112368888999988999
Q ss_pred CCEEEEEECCCcEEEEEeC
Q psy13856 201 GDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 201 g~~l~s~s~D~~v~iw~~~ 219 (271)
+..+.+++.|..+++|.-+
T Consensus 408 ~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 408 EPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCceeeecccceeeeeeec
Confidence 9999999999999999754
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.6e-15 Score=124.68 Aligned_cols=150 Identities=11% Similarity=0.074 Sum_probs=117.2
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc--------eeeeccccc--cccccceEEEEcCCCCeEEEEeCCCcEEEEEe
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST--------ISLLQGSVY--LRRESNKAGALSPKLNRSATSSFHEAAKHLGT 93 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~--------~~~~~~h~~--~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~ 93 (271)
+...++...|||..||+|+.||.|.+|+. +..-++|.. . |+++.||+||++|++=+.|.++++||+
T Consensus 318 v~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~----Itsi~FS~dg~~LlSRg~D~tLKvWDL 393 (641)
T KOG0772|consen 318 VPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQD----ITSISFSYDGNYLLSRGFDDTLKVWDL 393 (641)
T ss_pred cCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCc----eeEEEeccccchhhhccCCCceeeeec
Confidence 33455666789999999999999999996 555677877 6 999999999999999999999999999
Q ss_pred ecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCC--CcceEEEEEccCCCCCCcEEEEEeC------
Q psy13856 94 VQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENH--SDWVRDVAWAPSWGLSKCMIASCSQ------ 165 (271)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~~~~l~s~~~------ 165 (271)
+ +..+++. ...+- .-+-+.++|+| +..+|++|..
T Consensus 394 r--q~kkpL~--------------------------------~~tgL~t~~~~tdc~FSP----d~kli~TGtS~~~~~~ 435 (641)
T KOG0772|consen 394 R--QFKKPLN--------------------------------VRTGLPTPFPGTDCCFSP----DDKLILTGTSAPNGMT 435 (641)
T ss_pred c--ccccchh--------------------------------hhcCCCccCCCCccccCC----CceEEEecccccCCCC
Confidence 5 2222222 22221 22346789999 6889998864
Q ss_pred CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q psy13856 166 DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~ 217 (271)
.|.+.+||..+-.. +..+.-....|..+.|+|.=+.++.|+.||++++|-
T Consensus 436 ~g~L~f~d~~t~d~--v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 436 AGTLFFFDRMTLDT--VYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred CceEEEEeccceee--EEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 57899999887665 555555577899999999988888899999999874
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-15 Score=114.21 Aligned_cols=148 Identities=11% Similarity=0.034 Sum_probs=117.5
Q ss_pred CCCEEEEccCCCeEEeccc--------eeeeccccccccccceEEEEcCCCC-eEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 34 IGHTLISCDTQAHIGIRST--------ISLLQGSVYLRRESNKAGALSPKLN-RSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
+-++|.++|-|-+..+||+ ...+-+|... |++++|...+. .+|+.|.||++|+||++..+-
T Consensus 162 dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKE----V~DIaf~~~s~~~FASvgaDGSvRmFDLR~leH------ 231 (364)
T KOG0290|consen 162 DPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKE----VYDIAFLKGSRDVFASVGADGSVRMFDLRSLEH------ 231 (364)
T ss_pred CcceeEeecccCeEEEEEEeeccccceeeEEEecCcc----eeEEEeccCccceEEEecCCCcEEEEEeccccc------
Confidence 5678999999999999999 2245678888 99999998654 899999999999999951110
Q ss_pred cceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCC-CeEEEEEcCCCceeeee
Q psy13856 105 KYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQD-RKVIIWTSNDYVTWTPF 183 (271)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~ 183 (271)
. ..+.+-..-..+...++|++. |.+++|+-..| ..|.|.|++.+... +.
T Consensus 232 ------------------------S--TIIYE~p~~~~pLlRLswnkq---DpnymATf~~dS~~V~iLDiR~P~tp-va 281 (364)
T KOG0290|consen 232 ------------------------S--TIIYEDPSPSTPLLRLSWNKQ---DPNYMATFAMDSNKVVILDIRVPCTP-VA 281 (364)
T ss_pred ------------------------c--eEEecCCCCCCcceeeccCcC---CchHHhhhhcCCceEEEEEecCCCcc-ee
Confidence 0 111111112467788999998 89999987665 57999999987643 77
Q ss_pred eeccCCCCeEEEEEecC-CCEEEEEECCCcEEEEEeCCC
Q psy13856 184 IMNTFDDVVWNVSWSLT-GDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 184 ~~~~h~~~v~~v~~~~~-g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.+.+|.+.|+.++|.|. ...|.++++|..+-|||+...
T Consensus 282 ~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 282 RLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred hhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 89999999999999996 678999999999999999754
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-14 Score=116.64 Aligned_cols=178 Identities=11% Similarity=0.071 Sum_probs=134.1
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCC-eEEEEeCCCcEEEEEeecCC
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLN-RSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~~~d~~~~~ 97 (271)
+-+....|...++++|+.|++++||.+ ++.+.-...+ |.+..|.|+|. .+++++....++.||+ .
T Consensus 216 I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fP----i~~a~f~p~G~~~i~~s~rrky~ysyDl---e 288 (514)
T KOG2055|consen 216 ITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFP----IQKAEFAPNGHSVIFTSGRRKYLYSYDL---E 288 (514)
T ss_pred ceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCc----cceeeecCCCceEEEecccceEEEEeec---c
Confidence 344455678899999999999999998 5555555667 99999999999 9999999999999998 4
Q ss_pred CCceeecc---ce-----eeEEEeeccceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEE
Q psy13856 98 SPACLQPK---YF-----KLTVYSTKLTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIAS 162 (271)
Q Consensus 98 ~~~~~~~~---~~-----~~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s 162 (271)
+.+..+.. .. ..-..+.++++++ +.|.+ ..++ +.+.+++ -.+.|..+.|+. |+..|++
T Consensus 289 ~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~--eli~s~K-ieG~v~~~~fsS----dsk~l~~ 361 (514)
T KOG2055|consen 289 TAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTK--ELITSFK-IEGVVSDFTFSS----DSKELLA 361 (514)
T ss_pred ccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhh--hhhheee-eccEEeeEEEec----CCcEEEE
Confidence 44443322 11 1122334466666 77777 4444 5666665 467899999997 7899999
Q ss_pred EeCCCeEEEEEcCCCceeeeeeeccCCCC--eEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 163 CSQDRKVIIWTSNDYVTWTPFIMNTFDDV--VWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 163 ~~~dg~i~iwd~~~~~~~~~~~~~~h~~~--v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
++.+|.|.+||++...+ ...+.. .+. -+++|.+++|.+||+||..|-|.|||.++
T Consensus 362 ~~~~GeV~v~nl~~~~~--~~rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 362 SGGTGEVYVWNLRQNSC--LHRFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred EcCCceEEEEecCCcce--EEEEee-cCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 99999999999999765 333332 233 35677789999999999999999999764
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=112.64 Aligned_cols=131 Identities=20% Similarity=0.208 Sum_probs=101.0
Q ss_pred ceeEEee--ce---eEeecc-ccccceecccCCCC---C-CCEEEEccCCCeEEeccc-----eeeeccccccccccceE
Q psy13856 5 EWLLVSC--DG---LLMTLK-PTLEIETYTESPLR---I-GHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKA 69 (271)
Q Consensus 5 ~~~~~~~--~~---~~~~~~-~~~~~~~~~~~~~~---~-g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~ 69 (271)
+..++.| || .+.+.. +..+-+.|+++..- + ..++|.|+.-|.|++.|+ ...+.+|... |..
T Consensus 65 rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~s----INe 140 (385)
T KOG1034|consen 65 RVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGS----INE 140 (385)
T ss_pred EEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCcc----chh
Confidence 4556666 44 223332 33455566665542 2 347888889999999999 6778999999 999
Q ss_pred EEEcCC-CCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEE
Q psy13856 70 GALSPK-LNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVA 148 (271)
Q Consensus 70 ~~~s~~-~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~ 148 (271)
+.|+|+ .++++++|.|.+||+|++ ++..|+.. ..-+.+|.+.|.++.
T Consensus 141 ik~~p~~~qlvls~SkD~svRlwnI---~~~~Cv~V-----------------------------fGG~egHrdeVLSvD 188 (385)
T KOG1034|consen 141 IKFHPDRPQLVLSASKDHSVRLWNI---QTDVCVAV-----------------------------FGGVEGHRDEVLSVD 188 (385)
T ss_pred hhcCCCCCcEEEEecCCceEEEEec---cCCeEEEE-----------------------------ecccccccCcEEEEE
Confidence 999994 579999999999999999 55555432 122357999999999
Q ss_pred EccCCCCCCcEEEEEeCCCeEEEEEcC
Q psy13856 149 WAPSWGLSKCMIASCSQDRKVIIWTSN 175 (271)
Q Consensus 149 ~~p~~~~~~~~l~s~~~dg~i~iwd~~ 175 (271)
|++ ++.+|++|+.|-++++|++.
T Consensus 189 ~~~----~gd~i~ScGmDhslk~W~l~ 211 (385)
T KOG1034|consen 189 FSL----DGDRIASCGMDHSLKLWRLN 211 (385)
T ss_pred EcC----CCCeeeccCCcceEEEEecC
Confidence 999 79999999999999999998
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=9e-15 Score=114.09 Aligned_cols=147 Identities=22% Similarity=0.302 Sum_probs=115.0
Q ss_pred CEEEEccCCCeEEeccc-----eeeecccccc-ccccceEEEEcCCCC----eEEEEeCCCcEEEEEeecCCCCceeecc
Q psy13856 36 HTLISCDTQAHIGIRST-----ISLLQGSVYL-RRESNKAGALSPKLN----RSATSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 36 ~~l~s~s~d~~i~lwd~-----~~~~~~h~~~-~~~~i~~~~~s~~~~----~l~s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
+.+++.+. +.+.+|.. +..++...+. ..++-+.++|+-+.+ ++|.|+.-|.|++.|..
T Consensus 56 ~vfatvG~-~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~----------- 123 (385)
T KOG1034|consen 56 QVFATVGG-NRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVV----------- 123 (385)
T ss_pred ceEEEeCC-cEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecc-----------
Confidence 46777776 78888887 3444322221 223367788875432 78888899999999972
Q ss_pred ceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeee-e
Q psy13856 106 YFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPF-I 184 (271)
Q Consensus 106 ~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~ 184 (271)
.+ ++...+.+|...|+.+.+.|. ..++++++|.|-.|++|++++..+..+. -
T Consensus 124 ----------------------~~--~~~~~~~ghG~sINeik~~p~---~~qlvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 124 ----------------------SG--QCSKNYRGHGGSINEIKFHPD---RPQLVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred ----------------------hh--hhccceeccCccchhhhcCCC---CCcEEEEecCCceEEEEeccCCeEEEEecc
Confidence 23 566677899999999999997 6889999999999999999998873211 3
Q ss_pred eccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 185 MNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 185 ~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+.+|.+.|.++.|+++|.++++++.|.++++|+++..
T Consensus 177 ~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~ 213 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVK 213 (385)
T ss_pred cccccCcEEEEEEcCCCCeeeccCCcceEEEEecChh
Confidence 5689999999999999999999999999999999854
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.5e-15 Score=133.68 Aligned_cols=177 Identities=14% Similarity=0.088 Sum_probs=125.6
Q ss_pred EEEEccCCCeEEeccc-----------eeeeccccccccccceEEEEcCCCC-eEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 37 TLISCDTQAHIGIRST-----------ISLLQGSVYLRRESNKAGALSPKLN-RSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 37 ~l~s~s~d~~i~lwd~-----------~~~~~~h~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
+||.|..||.|.+||. +.....|.+. |..++|++... .||+|+.||.|.+||+...++.-....
T Consensus 82 lIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~----V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~ 157 (1049)
T KOG0307|consen 82 LIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGP----VLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGS 157 (1049)
T ss_pred eeeccccCCceEEecchhhccCcchHHHhhhcccCCc----eeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCC
Confidence 5999999999999998 5667889999 99999999654 999999999999999842111111101
Q ss_pred cceeeEEEeec-----cceee-----eEEEEeeCCceEEeEEecCCCc--ceEEEEEccCCCCCCcEEEEEeCCC---eE
Q psy13856 105 KYFKLTVYSTK-----LTRIL-----ILVRICGGDKWIEETKLENHSD--WVRDVAWAPSWGLSKCMIASCSQDR---KV 169 (271)
Q Consensus 105 ~~~~~~~~~~~-----~~~l~-----~~v~i~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~~~~~l~s~~~dg---~i 169 (271)
...+..+.+.. ...|+ +...|++-+.-+.+..+..|.. .+..+.|+|+ .-..+++++.|. .|
T Consensus 158 ~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~---~aTql~~As~dd~~Pvi 234 (1049)
T KOG0307|consen 158 QAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPD---HATQLLVASGDDSAPVI 234 (1049)
T ss_pred CCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCC---CceeeeeecCCCCCcee
Confidence 11122222222 22233 3444422221134444544433 4779999997 566777777654 59
Q ss_pred EEEEcCCCceeeeeeeccCCCCeEEEEEecCC-CEEEEEECCCcEEEEEeCCC
Q psy13856 170 IIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTG-DILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~v~iw~~~~~ 221 (271)
.+||+|..... .+.+.+|...|.++.|++.. .+|++++.|+.|.+|+.+++
T Consensus 235 qlWDlR~assP-~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg 286 (1049)
T KOG0307|consen 235 QLWDLRFASSP-LKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG 286 (1049)
T ss_pred EeecccccCCc-hhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc
Confidence 99999876542 67788999999999999865 89999999999999999986
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=1.7e-14 Score=113.08 Aligned_cols=178 Identities=10% Similarity=0.093 Sum_probs=126.7
Q ss_pred CEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcC--CCCeEEEEeCCCcEEEEEeecCCCCceeecccee
Q psy13856 36 HTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSP--KLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFK 108 (271)
Q Consensus 36 ~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~ 108 (271)
..+|++...|.|++||. +..++++... +..++|.. .+..+.+|+.||+|++||++.......+.....+
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~----~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPAT----TNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCCc----ccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 56788888899999998 7888999998 89999976 5678999999999999999532222222221222
Q ss_pred ---eEEEee--ccceee---------eEEEEe--eCCceEEeEEe-cCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEE
Q psy13856 109 ---LTVYST--KLTRIL---------ILVRIC--GGDKWIEETKL-ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII 171 (271)
Q Consensus 109 ---~~~~~~--~~~~l~---------~~v~i~--~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~i 171 (271)
...+.. ..+.++ -.+.++ +..+ +.++.+ ..|.+.|++++|+|+ +.++|++||.||.+.+
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~q-q~l~~~~eSH~DDVT~lrFHP~---~pnlLlSGSvDGLvnl 192 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQ-QLLRQLNESHNDDVTQLRFHPS---DPNLLLSGSVDGLVNL 192 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEecccc-chhhhhhhhccCcceeEEecCC---CCCeEEeecccceEEe
Confidence 222222 133333 223332 2221 223333 579999999999998 8999999999999999
Q ss_pred EEcCCCcee-eeeeeccCCCCeEEEEEecCC-CEEEEEECCCcEEEEEeCCC
Q psy13856 172 WTSNDYVTW-TPFIMNTFDDVVWNVSWSLTG-DILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 172 wd~~~~~~~-~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~v~iw~~~~~ 221 (271)
||+.....- .......|.+.|.++.|..++ ..+.+-+.+++..+|+++.+
T Consensus 193 fD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~ 244 (376)
T KOG1188|consen 193 FDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDG 244 (376)
T ss_pred eecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCC
Confidence 999865321 022234577889999998876 45888889999999999876
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.5e-14 Score=122.67 Aligned_cols=163 Identities=17% Similarity=0.228 Sum_probs=124.1
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc--
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-- 105 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-- 105 (271)
.+|..+|.||.|-.|++-+. ...+++|.+. |.++.|+|.+++||+.+.||++++|++ .++.+..+.
T Consensus 106 g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~ap----Vl~l~~~p~~~fLAvss~dG~v~iw~~---~~~~~~~tl~~ 178 (933)
T KOG1274|consen 106 GSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAP----VLQLSYDPKGNFLAVSSCDGKVQIWDL---QDGILSKTLTG 178 (933)
T ss_pred cCCcEEEeecCceeEEEEeccccchheeecccCCc----eeeeeEcCCCCEEEEEecCceEEEEEc---ccchhhhhccc
Confidence 47889999999999999988 7889999999 999999999999999999999999999 555444332
Q ss_pred -----------ceeeEEEeec-cceee----eEEEEeeCCceEEeEEecC--CCcceEEEEEccCCCCCCcEEEEEeCCC
Q psy13856 106 -----------YFKLTVYSTK-LTRIL----ILVRICGGDKWIEETKLEN--HSDWVRDVAWAPSWGLSKCMIASCSQDR 167 (271)
Q Consensus 106 -----------~~~~~~~~~~-~~~l~----~~v~i~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~~~~~l~s~~~dg 167 (271)
-+....|.+. +++++ +.|++.....|.....+.. +...+..++|+|+ |.|||+++.||
T Consensus 179 v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn----G~YiAAs~~~g 254 (933)
T KOG1274|consen 179 VDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN----GKYIAASTLDG 254 (933)
T ss_pred CCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC----CcEEeeeccCC
Confidence 1133456666 44444 8888833334466555543 4455999999995 99999999999
Q ss_pred eEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCc
Q psy13856 168 KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNS 212 (271)
Q Consensus 168 ~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~ 212 (271)
.|.|||.++.+ . +.....|.+++|.|++.-+-.-..-|.
T Consensus 255 ~I~vWnv~t~~---~---~~~~~~Vc~~aw~p~~n~it~~~~~g~ 293 (933)
T KOG1274|consen 255 QILVWNVDTHE---R---HEFKRAVCCEAWKPNANAITLITALGT 293 (933)
T ss_pred cEEEEecccch---h---ccccceeEEEecCCCCCeeEEEeeccc
Confidence 99999998732 1 334568999999998765544433333
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=9.2e-15 Score=112.29 Aligned_cols=146 Identities=19% Similarity=0.233 Sum_probs=114.5
Q ss_pred CCCCCCEEEEccCCCeEEeccc------eeee-----ccccccccccceEEEEcC--CCCeEEEEeCCCcEEEEEeecCC
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST------ISLL-----QGSVYLRRESNKAGALSP--KLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~------~~~~-----~~h~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
.-||+..+++-. |..|.+|++ .+.+ ..|+.. .++-+|+| +++.+++. .|++++.||.+
T Consensus 131 w~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~----ftsg~WspHHdgnqv~tt-~d~tl~~~D~R--- 201 (370)
T KOG1007|consen 131 WEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHS----FTSGAWSPHHDGNQVATT-SDSTLQFWDLR--- 201 (370)
T ss_pred EcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccce----ecccccCCCCccceEEEe-CCCcEEEEEcc---
Confidence 347888888887 699999998 1111 123334 77889999 77787765 78999999983
Q ss_pred CCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC
Q psy13856 98 SPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY 177 (271)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 177 (271)
+..+. ...-..|...|..+.|+|+ ...+|++|+.||.|++||.++.
T Consensus 202 T~~~~-------------------------------~sI~dAHgq~vrdlDfNpn---kq~~lvt~gDdgyvriWD~R~t 247 (370)
T KOG1007|consen 202 TMKKN-------------------------------NSIEDAHGQRVRDLDFNPN---KQHILVTCGDDGYVRIWDTRKT 247 (370)
T ss_pred chhhh-------------------------------cchhhhhcceeeeccCCCC---ceEEEEEcCCCccEEEEeccCC
Confidence 22221 1112368889999999998 6789999999999999999987
Q ss_pred ceeeeeeeccCCCCeEEEEEecC-CCEEEEEECCCcEEEEEeCC
Q psy13856 178 VTWTPFIMNTFDDVVWNVSWSLT-GDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 178 ~~~~~~~~~~h~~~v~~v~~~~~-g~~l~s~s~D~~v~iw~~~~ 220 (271)
+.. +..+.+|.-.|++|.|+|. .+++++++.|..|.+|...+
T Consensus 248 k~p-v~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 248 KFP-VQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred Ccc-ccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 643 7789999999999999995 57888999999999998754
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.2e-14 Score=109.45 Aligned_cols=147 Identities=14% Similarity=0.172 Sum_probs=114.3
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
+.....+ +.+..|+.++.||.+++||+ +.....|..+ +.+++|.++ ..+++|+.||.|+.+|+. +
T Consensus 16 IS~v~f~--~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~p----lL~c~F~d~-~~~~~G~~dg~vr~~Dln---~- 84 (323)
T KOG1036|consen 16 ISSVKFS--PSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAP----LLDCAFADE-STIVTGGLDGQVRRYDLN---T- 84 (323)
T ss_pred eeeEEEc--CcCCcEEEEeccCcEEEEeccchhhhhheecCCc----eeeeeccCC-ceEEEeccCceEEEEEec---C-
Confidence 4444444 56677888889999999999 5556678888 999999974 678999999999999982 2
Q ss_pred ceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce
Q psy13856 100 ACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT 179 (271)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 179 (271)
+ ....+-.|...|.+|.+++ ....+++|+.|++|++||.+....
T Consensus 85 -----------------------------~---~~~~igth~~~i~ci~~~~----~~~~vIsgsWD~~ik~wD~R~~~~ 128 (323)
T KOG1036|consen 85 -----------------------------G---NEDQIGTHDEGIRCIEYSY----EVGCVISGSWDKTIKFWDPRNKVV 128 (323)
T ss_pred -----------------------------C---cceeeccCCCceEEEEeec----cCCeEEEcccCccEEEEecccccc
Confidence 2 2233446999999999998 477899999999999999997432
Q ss_pred eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 180 WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 180 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
...+. ....|+++.. .|..|+.|+.|..|.+||++...
T Consensus 129 --~~~~d-~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~ 166 (323)
T KOG1036|consen 129 --VGTFD-QGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLD 166 (323)
T ss_pred --ccccc-cCceEEEEec--cCCEEEEeecCceEEEEEccccc
Confidence 22222 3347887765 47789999999999999998654
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-14 Score=122.32 Aligned_cols=148 Identities=11% Similarity=0.151 Sum_probs=114.6
Q ss_pred CCCEEEEccCCCeEEeccc-----------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCcee
Q psy13856 34 IGHTLISCDTQAHIGIRST-----------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACL 102 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~ 102 (271)
..+.|+.+.+||.|.++|. +..+..|... |.++.|-|-...|++++.|.++++||+ +...+
T Consensus 63 ~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nA----ifDl~wapge~~lVsasGDsT~r~Wdv---k~s~l- 134 (720)
T KOG0321|consen 63 KEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNA----IFDLKWAPGESLLVSASGDSTIRPWDV---KTSRL- 134 (720)
T ss_pred ccceEEEecCCCceeeecchhhhcchhhhhhcccccccce----eEeeccCCCceeEEEccCCceeeeeee---cccee-
Confidence 4568999999999999998 3556789999 999999996679999999999999998 33222
Q ss_pred eccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce---
Q psy13856 103 QPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT--- 179 (271)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~--- 179 (271)
.-...+.||...|.+++|.|. +...|++|+.||.+.|||++-...
T Consensus 135 -----------------------------~G~~~~~GH~~SvkS~cf~~~---n~~vF~tGgRDg~illWD~R~n~~d~~ 182 (720)
T KOG0321|consen 135 -----------------------------VGGRLNLGHTGSVKSECFMPT---NPAVFCTGGRDGEILLWDCRCNGVDAL 182 (720)
T ss_pred -----------------------------ecceeecccccccchhhhccC---CCcceeeccCCCcEEEEEEeccchhhH
Confidence 222357799999999999998 899999999999999999974220
Q ss_pred --e-------------e-------eeeeccCCCCeEE---EEEecCCCEEEEEEC-CCcEEEEEeCCC
Q psy13856 180 --W-------------T-------PFIMNTFDDVVWN---VSWSLTGDILTVSCG-DNSVSLWKENTD 221 (271)
Q Consensus 180 --~-------------~-------~~~~~~h~~~v~~---v~~~~~g~~l~s~s~-D~~v~iw~~~~~ 221 (271)
. . ...-..+...+.+ +.+..|...||+++. |+.|++||++..
T Consensus 183 e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~ 250 (720)
T KOG0321|consen 183 EEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN 250 (720)
T ss_pred HHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence 0 0 0011123334444 555567788999888 999999999865
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.3e-14 Score=120.30 Aligned_cols=191 Identities=16% Similarity=0.110 Sum_probs=134.4
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc---------------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEE
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST---------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAK 89 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~---------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~ 89 (271)
.+.++.-.++++.+.+|+.||+|+.|++ ...+.||++. ++.+++|+....|++++.||+++
T Consensus 346 PVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtda----vw~l~~s~~~~~Llscs~DgTvr 421 (577)
T KOG0642|consen 346 PVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDA----VWLLALSSTKDRLLSCSSDGTVR 421 (577)
T ss_pred ceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccc----eeeeeecccccceeeecCCceEE
Confidence 3444555579999999999999999954 5678899999 99999999999999999999999
Q ss_pred EEEeecCCCCce-ee----ccceeeEEEeeccc---eee-eEEEE-----eeCCceEEeEEecC-------CCcceEEEE
Q psy13856 90 HLGTVQSSSPAC-LQ----PKYFKLTVYSTKLT---RIL-ILVRI-----CGGDKWIEETKLEN-------HSDWVRDVA 148 (271)
Q Consensus 90 ~~d~~~~~~~~~-~~----~~~~~~~~~~~~~~---~l~-~~v~i-----~~~~~~~~~~~~~~-------h~~~v~~v~ 148 (271)
+|+.. .... .- ...++..+--...+ .++ ..+.. .... ..+..+.. ....+..|.
T Consensus 422 ~w~~~---~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~--s~~~~~~s~~~~~~~~~~~in~vV 496 (577)
T KOG0642|consen 422 LWEPT---EESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVV--SDLLIFESSASPGPRRYPQINKVV 496 (577)
T ss_pred eeccC---CcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhh--hheeeccccCCCcccccCccceEE
Confidence 99973 2222 11 11222222111111 000 11110 0000 11111110 123467788
Q ss_pred EccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEE
Q psy13856 149 WAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCIT 228 (271)
Q Consensus 149 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~ 228 (271)
++|+ ..+.+++..|+.|+++|..++.. ...+..|...+.++++.|+|.+|++++.|+.+++|.+... .+..
T Consensus 497 s~~~----~~~~~~~hed~~Ir~~dn~~~~~--l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k---~~~~ 567 (577)
T KOG0642|consen 497 SHPT----ADITFTAHEDRSIRFFDNKTGKI--LHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK---TCVL 567 (577)
T ss_pred ecCC----CCeeEecccCCceeccccccccc--chheeeccceecceeecCCCceEEeecCCceeehhhccch---heee
Confidence 8994 78999999999999999999887 7788899999999999999999999999999999998754 4444
Q ss_pred Eeccc
Q psy13856 229 EMGKT 233 (271)
Q Consensus 229 ~~~~~ 233 (271)
+...|
T Consensus 568 es~~~ 572 (577)
T KOG0642|consen 568 ESTAH 572 (577)
T ss_pred ccccc
Confidence 44433
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.7e-13 Score=114.04 Aligned_cols=201 Identities=17% Similarity=0.188 Sum_probs=137.8
Q ss_pred cceeEEeeceeEeeccccccceecccCCCCCCCEEEEccCCCeEEeccc------eeeeccccccccccceEEEEcCCCC
Q psy13856 4 KEWLLVSCDGLLMTLKPTLEIETYTESPLRIGHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSPKLN 77 (271)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~ 77 (271)
+++.+-+| .-.+++|. ++.+.........||.+-.||.|.+|++ ...+.++.+. .|-+++|+ ++.
T Consensus 11 ~~m~vhrc--rf~d~~Ps---~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~dr---sIE~L~W~-e~~ 81 (691)
T KOG2048|consen 11 GKMQVHRC--RFVDYKPS---EIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDR---SIESLAWA-EGG 81 (691)
T ss_pred ceeEEEEE--EEEeeecc---ceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCC---ceeeEEEc-cCC
Confidence 45666666 55555543 2222222335556999999999999999 4555666544 37899999 456
Q ss_pred eEEEEeCCCcEEEEEeecCCCCceeecc-ceeeEEEeec----cceee-----eEEEE--eeCCceEEeEEecCCCcceE
Q psy13856 78 RSATSSFHEAAKHLGTVQSSSPACLQPK-YFKLTVYSTK----LTRIL-----ILVRI--CGGDKWIEETKLENHSDWVR 145 (271)
Q Consensus 78 ~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~~----~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~ 145 (271)
.|++.+.+|.|.-||+ .+++..... .....+|+.+ .+.++ |.+.. ...+..+..+.+.-.++.|.
T Consensus 82 RLFS~g~sg~i~EwDl---~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvL 158 (691)
T KOG2048|consen 82 RLFSSGLSGSITEWDL---HTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVL 158 (691)
T ss_pred eEEeecCCceEEEEec---ccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEE
Confidence 7889999999999999 555554443 3344444443 34444 53333 34444555666666779999
Q ss_pred EEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeee--ecc----CCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 146 DVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFI--MNT----FDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~----h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
+++|+| ++..+++|+.||.|++||...+...-... +.+ -..-|++|.|-.+ ..|++|..-|+|.+||..
T Consensus 159 slsw~~----~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~ 233 (691)
T KOG2048|consen 159 SLSWNP----TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSI 233 (691)
T ss_pred EEEecC----CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEccc
Confidence 999999 68899999999999999999876521111 111 2235788888766 468899999999999987
Q ss_pred CC
Q psy13856 220 TD 221 (271)
Q Consensus 220 ~~ 221 (271)
.+
T Consensus 234 ~g 235 (691)
T KOG2048|consen 234 FG 235 (691)
T ss_pred Cc
Confidence 55
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.1e-13 Score=117.53 Aligned_cols=188 Identities=18% Similarity=0.277 Sum_probs=140.4
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc--------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeec--
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST--------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQ-- 95 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~-- 95 (271)
.|.....+|+..+++-+.-|..++|.. ...+.+|.+. |.+++|+|.|.+|++.|.|.+-|+|--..
T Consensus 319 F~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~----V~dv~W~psGeflLsvs~DQTTRlFa~wg~q 394 (764)
T KOG1063|consen 319 FWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDG----VKDVDWDPSGEFLLSVSLDQTTRLFARWGRQ 394 (764)
T ss_pred eeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccccccccc----ceeeeecCCCCEEEEeccccceeeecccccc
Confidence 466667789999999999999999983 4556799999 99999999999999999999998864320
Q ss_pred ------------CCCCcee-------------------------------------------------------------
Q psy13856 96 ------------SSSPACL------------------------------------------------------------- 102 (271)
Q Consensus 96 ------------~~~~~~~------------------------------------------------------------- 102 (271)
|....|+
T Consensus 395 ~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~ 474 (764)
T KOG1063|consen 395 QEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAF 474 (764)
T ss_pred cceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCC
Confidence 0000010
Q ss_pred ---------------------------------------------eccceeeEEEeec----cceee----------eEE
Q psy13856 103 ---------------------------------------------QPKYFKLTVYSTK----LTRIL----------ILV 123 (271)
Q Consensus 103 ---------------------------------------------~~~~~~~~~~~~~----~~~l~----------~~v 123 (271)
+.+++...+++++ ++.++ ..|
T Consensus 475 ~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI 554 (764)
T KOG1063|consen 475 FPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVI 554 (764)
T ss_pred cccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEE
Confidence 0001111111111 33333 344
Q ss_pred EEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCcee--eeeeeccCCCCeEEEEEecCC
Q psy13856 124 RICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTW--TPFIMNTFDDVVWNVSWSLTG 201 (271)
Q Consensus 124 ~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~h~~~v~~v~~~~~g 201 (271)
++.+...|.....+.+|.-.|+.++|+| |+.+|++.+.|+++.+|........ .......|..-|++..|+|++
T Consensus 555 ~lw~t~~W~~~~~L~~HsLTVT~l~FSp----dg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde 630 (764)
T KOG1063|consen 555 RLWNTANWLQVQELEGHSLTVTRLAFSP----DGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE 630 (764)
T ss_pred EEEeccchhhhheecccceEEEEEEECC----CCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc
Confidence 4466666777788999999999999999 7999999999999999998654321 122467899999999999999
Q ss_pred CEEEEEECCCcEEEEEeCCC
Q psy13856 202 DILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 202 ~~l~s~s~D~~v~iw~~~~~ 221 (271)
.+++|+|.|.+|++|.....
T Consensus 631 ~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 631 KYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ceeEEecCCceEEEEeccCc
Confidence 99999999999999998754
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.1e-13 Score=107.88 Aligned_cols=195 Identities=11% Similarity=0.080 Sum_probs=140.9
Q ss_pred CCCCCCCEEEEccCCCeEEeccc-ee----------eec-------cccccccccceEEEEc-------CCCCeEEEEeC
Q psy13856 30 SPLRIGHTLISCDTQAHIGIRST-IS----------LLQ-------GSVYLRRESNKAGALS-------PKLNRSATSSF 84 (271)
Q Consensus 30 ~~~~~g~~l~s~s~d~~i~lwd~-~~----------~~~-------~h~~~~~~~i~~~~~s-------~~~~~l~s~s~ 84 (271)
...|||..|++-+.|..+++|++ .. .+. ..... |+...|- |+.+++++.++
T Consensus 56 kWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~t----vydy~wYs~M~s~qP~t~l~a~ssr 131 (406)
T KOG2919|consen 56 KWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGET----VYDYCWYSRMKSDQPSTNLFAVSSR 131 (406)
T ss_pred eeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCE----EEEEEeeeccccCCCccceeeeccc
Confidence 34579999999999999999998 00 001 11223 5655554 56779999999
Q ss_pred CCcEEEEEeecCCCCceeeccc-------eeeEEEeeccceee----eEEEE---eeCCceEEeEEec-----CCCcceE
Q psy13856 85 HEAAKHLGTVQSSSPACLQPKY-------FKLTVYSTKLTRIL----ILVRI---CGGDKWIEETKLE-----NHSDWVR 145 (271)
Q Consensus 85 d~~i~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~l~----~~v~i---~~~~~~~~~~~~~-----~h~~~v~ 145 (271)
|.-|++||..+++.....+... .-...|+.++..+. +.|++ .+.+....+.... +..+-+.
T Consensus 132 ~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis 211 (406)
T KOG2919|consen 132 DQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS 211 (406)
T ss_pred cCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee
Confidence 9999999996544443333321 13456778877766 77887 2333222222222 2367789
Q ss_pred EEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEEC-CCcEEEEEeCCCCce
Q psy13856 146 DVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG-DNSVSLWKENTDGAW 224 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-D~~v~iw~~~~~~~~ 224 (271)
+++|+|. +...++.|+.-.++=||.-...++ ...+.+|.+.|+.++|.++|+.|++|+. |-.|..||++.-+
T Consensus 212 c~a~sP~---~~~~~a~gsY~q~~giy~~~~~~p--l~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~-- 284 (406)
T KOG2919|consen 212 CFAFSPM---DSKTLAVGSYGQRVGIYNDDGRRP--LQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR-- 284 (406)
T ss_pred eeeccCC---CCcceeeecccceeeeEecCCCCc--eeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--
Confidence 9999998 788999999999999998888776 7888899999999999999999999986 7789999998542
Q ss_pred eEEEEecccch
Q psy13856 225 QCITEMGKTSE 235 (271)
Q Consensus 225 ~~~~~~~~~~~ 235 (271)
..+..+..|.+
T Consensus 285 ~pv~~L~rhv~ 295 (406)
T KOG2919|consen 285 DPVYALERHVG 295 (406)
T ss_pred chhhhhhhhcc
Confidence 34455555544
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.5e-14 Score=115.22 Aligned_cols=128 Identities=16% Similarity=0.223 Sum_probs=98.4
Q ss_pred CCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-----
Q psy13856 35 GHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK----- 105 (271)
Q Consensus 35 g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~----- 105 (271)
.+.++.++.||.+.+-+- ...+.+|.+. +.+-+|+|||.-|++++.||.|++|. +++....+.
T Consensus 75 ~d~~~i~s~DGkf~il~k~~rVE~sv~AH~~A----~~~gRW~~dGtgLlt~GEDG~iKiWS----rsGMLRStl~Q~~~ 146 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILNKSARVERSISAHAAA----ISSGRWSPDGAGLLTAGEDGVIKIWS----RSGMLRSTVVQNEE 146 (737)
T ss_pred cceEEEEcCCceEEEecccchhhhhhhhhhhh----hhhcccCCCCceeeeecCCceEEEEe----ccchHHHHHhhcCc
Confidence 357888999999999887 5567899999 99999999999999999999999998 555544433
Q ss_pred ceeeEEEeeccceee----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC
Q psy13856 106 YFKLTVYSTKLTRIL----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 106 ~~~~~~~~~~~~~l~----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 176 (271)
......|.++...+. +.+.| .... ..+...+.|.+-|.++.|+| ..+++++|+.|-+.++||...
T Consensus 147 ~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n--~k~i~WkAHDGiiL~~~W~~----~s~lI~sgGED~kfKvWD~~G 217 (737)
T KOG1524|consen 147 SIRCARWAPNSNSIVFCQGGHISIKPLAAN--SKIIRWRAHDGLVLSLSWST----QSNIIASGGEDFRFKIWDAQG 217 (737)
T ss_pred eeEEEEECCCCCceEEecCCeEEEeecccc--cceeEEeccCcEEEEeecCc----cccceeecCCceeEEeecccC
Confidence 123344555544433 55555 2222 34555678999999999999 589999999999999999764
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=8.5e-13 Score=108.58 Aligned_cols=186 Identities=14% Similarity=0.076 Sum_probs=129.0
Q ss_pred cccceecccCCCCCCCEEEEccCCCeEEeccc---------------------------------------------eee
Q psy13856 21 TLEIETYTESPLRIGHTLISCDTQAHIGIRST---------------------------------------------ISL 55 (271)
Q Consensus 21 ~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~---------------------------------------------~~~ 55 (271)
.++-.+|+...+++|.+| ||+.|..|..||- ...
T Consensus 285 aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~ 363 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT 363 (626)
T ss_pred ecCCceEEEEEecCccEe-ecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence 334456777777888855 5999999999996 122
Q ss_pred eccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeE--EEeeccceee-----eEEEEeeC
Q psy13856 56 LQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLT--VYSTKLTRIL-----ILVRICGG 128 (271)
Q Consensus 56 ~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~l~-----~~v~i~~~ 128 (271)
.++|.+. .+.++.+|+.+.++++++|+.+++|+. +...--+....+.. .+.+.+ .++ +...+.+.
T Consensus 364 v~gh~de----lwgla~hps~~q~~T~gqdk~v~lW~~---~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 364 VQGHGDE----LWGLATHPSKNQLLTCGQDKHVRLWND---HKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDT 435 (626)
T ss_pred EEecccc----eeeEEcCCChhheeeccCcceEEEccC---CceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEec
Confidence 3456666 788999999999999999999999994 33222222222222 233334 333 33333111
Q ss_pred CceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeee-ccCCCCeEEEEEecCCCEEEEE
Q psy13856 129 DKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIM-NTFDDVVWNVSWSLTGDILTVS 207 (271)
Q Consensus 129 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~v~~~~~g~~l~s~ 207 (271)
.+...+..-.. ..++++++|+| +|.+||.|+.|+.|++|.+...... .... .-+.+++..+.|++|+++|.+-
T Consensus 436 e~~~lv~~~~d-~~~ls~v~ysp----~G~~lAvgs~d~~iyiy~Vs~~g~~-y~r~~k~~gs~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 436 ETQDLVTIHTD-NEQLSVVRYSP----DGAFLAVGSHDNHIYIYRVSANGRK-YSRVGKCSGSPITHLDWSSDSQFLVSN 509 (626)
T ss_pred ccceeEEEEec-CCceEEEEEcC----CCCEEEEecCCCeEEEEEECCCCcE-EEEeeeecCceeEEeeecCCCceEEec
Confidence 11133333333 78999999999 7999999999999999999765421 2222 2234799999999999999999
Q ss_pred ECCCcEEEEEeCCC
Q psy13856 208 CGDNSVSLWKENTD 221 (271)
Q Consensus 208 s~D~~v~iw~~~~~ 221 (271)
+.|..|-.|.....
T Consensus 510 S~d~eiLyW~~~~~ 523 (626)
T KOG2106|consen 510 SGDYEILYWKPSEC 523 (626)
T ss_pred cCceEEEEEccccC
Confidence 99999999966543
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-13 Score=116.59 Aligned_cols=179 Identities=12% Similarity=0.079 Sum_probs=117.2
Q ss_pred CCCEEEEccCCCeEEeccc--------------------------------eeeeccccccccccceE---EEEcCCCCe
Q psy13856 34 IGHTLISCDTQAHIGIRST--------------------------------ISLLQGSVYLRRESNKA---GALSPKLNR 78 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~--------------------------------~~~~~~h~~~~~~~i~~---~~~s~~~~~ 78 (271)
|...+++|+.||.|.|||. +...+.|... |.+ +.+..|...
T Consensus 156 n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~t----i~ssvTvv~fkDe~t 231 (720)
T KOG0321|consen 156 NPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNT----IFSSVTVVLFKDEST 231 (720)
T ss_pred CCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCc----eeeeeEEEEEeccce
Confidence 5568999999999999998 1112233334 444 556667888
Q ss_pred EEEEeC-CCcEEEEEeecCCCCce---eecc--------ceeeEEEeec--cceee-----eEEEE--eeCCceEEeEEe
Q psy13856 79 SATSSF-HEAAKHLGTVQSSSPAC---LQPK--------YFKLTVYSTK--LTRIL-----ILVRI--CGGDKWIEETKL 137 (271)
Q Consensus 79 l~s~s~-d~~i~~~d~~~~~~~~~---~~~~--------~~~~~~~~~~--~~~l~-----~~v~i--~~~~~~~~~~~~ 137 (271)
||+++. |+.|++||++...+.-. .... .+....++.+ |.++. +.|.. ...-...++..+
T Consensus 232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~ 311 (720)
T KOG0321|consen 232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEF 311 (720)
T ss_pred eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhc
Confidence 998887 99999999952211100 1111 1122223333 45544 55555 111122455555
Q ss_pred cCCCcceEEE--EEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCC-CEEEEEECCCcEE
Q psy13856 138 ENHSDWVRDV--AWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTG-DILTVSCGDNSVS 214 (271)
Q Consensus 138 ~~h~~~v~~v--~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~v~ 214 (271)
.++...-.-+ ..+| |+.++++|+.|...++|.+...+.- ...+.+|...|.+|+|.|.. .-++++++|..++
T Consensus 312 sg~~~~sf~vks~lSp----d~~~l~SgSsd~~ayiw~vs~~e~~-~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~k 386 (720)
T KOG0321|consen 312 SGKLNSSFYVKSELSP----DDCSLLSGSSDEQAYIWVVSSPEAP-PALLLGHTREVTTVRWLPSATTPVATCSDDFRVK 386 (720)
T ss_pred cCcccceeeeeeecCC----CCceEeccCCCcceeeeeecCccCC-hhhhhCcceEEEEEeeccccCCCceeeccCcceE
Confidence 5554322222 2456 7999999999999999999887642 56788999999999999852 3466779999999
Q ss_pred EEEeCCC
Q psy13856 215 LWKENTD 221 (271)
Q Consensus 215 iw~~~~~ 221 (271)
||++..+
T Consensus 387 iW~l~~~ 393 (720)
T KOG0321|consen 387 IWRLSNG 393 (720)
T ss_pred EEeccCc
Confidence 9999654
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.7e-14 Score=111.34 Aligned_cols=135 Identities=19% Similarity=0.285 Sum_probs=107.4
Q ss_pred ceEEEEcCCCC-eEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceE
Q psy13856 67 NKAGALSPKLN-RSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVR 145 (271)
Q Consensus 67 i~~~~~s~~~~-~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~ 145 (271)
+..+.|.++.. .++||+.|..|++|.+..+..+.- ....+....+..|...|+
T Consensus 16 v~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~--------------------------~~~V~y~s~Ls~H~~aVN 69 (434)
T KOG1009|consen 16 VYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGG--------------------------DMKVEYLSSLSRHTRAVN 69 (434)
T ss_pred eEEEEeccCcccceecccCccceeeeeeeecCCCCC--------------------------ceeEEEeecccCCcceeE
Confidence 78999998766 999999999999999842221110 013366778889999999
Q ss_pred EEEEccCCCCCCcEEEEEeCCCeEEEEEcC--------C-----Cceee-eeeeccCCCCeEEEEEecCCCEEEEEECCC
Q psy13856 146 DVAWAPSWGLSKCMIASCSQDRKVIIWTSN--------D-----YVTWT-PFIMNTFDDVVWNVSWSLTGDILTVSCGDN 211 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~--------~-----~~~~~-~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 211 (271)
+|.|+| +|+++|||+.+|.+.+|-.. + .+.|. .+.+.+|...++.++|+|++.++++++-|+
T Consensus 70 ~vRf~p----~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dn 145 (434)
T KOG1009|consen 70 VVRFSP----DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDN 145 (434)
T ss_pred EEEEcC----CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccc
Confidence 999999 69999999999999999876 2 12232 346778999999999999999999999999
Q ss_pred cEEEEEeCCCCceeEEEEecccc
Q psy13856 212 SVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 212 ~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
.+++||+..+ +....+.+|.
T Consensus 146 s~~l~Dv~~G---~l~~~~~dh~ 165 (434)
T KOG1009|consen 146 SVRLWDVHAG---QLLAILDDHE 165 (434)
T ss_pred eEEEEEeccc---eeEeeccccc
Confidence 9999999876 5555554443
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.3e-14 Score=119.83 Aligned_cols=199 Identities=13% Similarity=0.144 Sum_probs=131.9
Q ss_pred eeceeEeeccccccceecccCCCCCCCEEEEccCCCeEEeccc--ee-eeccccccccccceEEEEcCCCCeEEEEeCCC
Q psy13856 10 SCDGLLMTLKPTLEIETYTESPLRIGHTLISCDTQAHIGIRST--IS-LLQGSVYLRRESNKAGALSPKLNRSATSSFHE 86 (271)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~--~~-~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~ 86 (271)
.+||.++.--..++..+|++....||.++|||+.|..|.+|+. .. .-..|.+. |.|+.|+|-...|++++-+.
T Consensus 40 ~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~----IQCMsFNP~~h~LasCsLsd 115 (1081)
T KOG1538|consen 40 TSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDA----IQCMSFNPITHQLASCSLSD 115 (1081)
T ss_pred CCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCe----eeEeecCchHHHhhhcchhh
Confidence 4566555443455677888888999999999999999999998 11 22467777 88888888777777776554
Q ss_pred cEEEEEeecCCCCceeecc---ceeeEEEeeccceee-----eEEEE-eeCCce-EEeEEecCCCcceEEEEEccCC---
Q psy13856 87 AAKHLGTVQSSSPACLQPK---YFKLTVYSTKLTRIL-----ILVRI-CGGDKW-IEETKLENHSDWVRDVAWAPSW--- 153 (271)
Q Consensus 87 ~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~l~-----~~v~i-~~~~~~-~~~~~~~~h~~~v~~v~~~p~~--- 153 (271)
.- +|.. ......+.. ....+.|+.+|++++ |+|.+ ...+.- ..+...-|..++|++|+|+|..
T Consensus 116 Fg-lWS~---~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G 191 (1081)
T KOG1538|consen 116 FG-LWSP---EQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEG 191 (1081)
T ss_pred cc-ccCh---hhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCC
Confidence 44 5654 222222211 335566677777777 66666 222210 1111222344566666666541
Q ss_pred ---------------------------------------CCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEE
Q psy13856 154 ---------------------------------------GLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWN 194 (271)
Q Consensus 154 ---------------------------------------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~ 194 (271)
.++|+++..|+.|+.+.+|..+.-. ...+.....+|+.
T Consensus 192 ~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gvr---LGTvg~~D~WIWt 268 (1081)
T KOG1538|consen 192 RNDILAVADWGQTLSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRDGVR---LGTVGEQDSWIWT 268 (1081)
T ss_pred ccceEEEEeccceeEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEeecCeE---EeeccccceeEEE
Confidence 1246777777777777777644322 4445556789999
Q ss_pred EEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 195 VSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 195 v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
|+..|++++++.|+.||+|--|++-
T Consensus 269 V~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 269 VQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEccCCceEEEEEccCeeehhhhH
Confidence 9999999999999999999999884
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-14 Score=109.78 Aligned_cols=154 Identities=16% Similarity=0.183 Sum_probs=131.9
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc--------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecC
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST--------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQS 96 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~ 96 (271)
.+++....+|++.+|.+-....|.||.. ..+++.|... |++++|+|..+.|++|+.|..-++|...
T Consensus 12 pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~----vtgvdWap~snrIvtcs~drnayVw~~~-- 85 (361)
T KOG1523|consen 12 PITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKI----VTGVDWAPKSNRIVTCSHDRNAYVWTQP-- 85 (361)
T ss_pred ceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcc----eeEEeecCCCCceeEccCCCCccccccC--
Confidence 3455666789999999999999999987 7788999999 9999999999999999999999999973
Q ss_pred CCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC
Q psy13856 97 SSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 176 (271)
.++.|++.-.+..+....++|.|+|+ .+.||+|+.-+.|.||-++.
T Consensus 86 ------------------------------~~~~WkptlvLlRiNrAAt~V~WsP~----enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 86 ------------------------------SGGTWKPTLVLLRINRAATCVKWSPK----ENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred ------------------------------CCCeeccceeEEEeccceeeEeecCc----CceEEeccCccEEEEEEEec
Confidence 34566676677778899999999994 89999999999999999988
Q ss_pred Ccee--eeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEe
Q psy13856 177 YVTW--TPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 177 ~~~~--~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~ 218 (271)
.+.| ...+-..+.+.|.+++|+|++-+|+.|+.|++.++|..
T Consensus 132 ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSa 175 (361)
T KOG1523|consen 132 ENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSA 175 (361)
T ss_pred ccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEE
Confidence 7654 12234567789999999999999999999999999964
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.6e-13 Score=106.29 Aligned_cols=137 Identities=21% Similarity=0.343 Sum_probs=110.9
Q ss_pred ccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEE
Q psy13856 57 QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETK 136 (271)
Q Consensus 57 ~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~ 136 (271)
.+|.+. |.++.|.+.|+++|+|+.|+++++||.. ..++.|.+...
T Consensus 10 s~h~Dl----ihdVs~D~~GRRmAtCSsDq~vkI~d~~-------------------------------~~s~~W~~Ts~ 54 (361)
T KOG2445|consen 10 SGHKDL----IHDVSFDFYGRRMATCSSDQTVKIWDST-------------------------------SDSGTWSCTSS 54 (361)
T ss_pred cCCcce----eeeeeecccCceeeeccCCCcEEEEecc-------------------------------CCCCceEEeee
Confidence 578888 9999999999999999999999999962 14567888888
Q ss_pred ecCCCcceEEEEEc-cCCCCCCcEEEEEeCCCeEEEEEcCC------Cceee-eeeeccCCCCeEEEEEecC--CCEEEE
Q psy13856 137 LENHSDWVRDVAWA-PSWGLSKCMIASCSQDRKVIIWTSND------YVTWT-PFIMNTFDDVVWNVSWSLT--GDILTV 206 (271)
Q Consensus 137 ~~~h~~~v~~v~~~-p~~~~~~~~l~s~~~dg~i~iwd~~~------~~~~~-~~~~~~h~~~v~~v~~~~~--g~~l~s 206 (271)
.+.|.+.|..|.|. |. -|+.+|+|+.|+++.||.-.. +..|. ...+....+.|+.|.|.|. |-.||+
T Consensus 55 Wrah~~Si~rV~WAhPE---fGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~ 131 (361)
T KOG2445|consen 55 WRAHDGSIWRVVWAHPE---FGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAA 131 (361)
T ss_pred EEecCCcEEEEEecCcc---ccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEE
Confidence 89999999999997 55 489999999999999998732 12231 3345666789999999995 889999
Q ss_pred EECCCcEEEEEeCCC---CceeEEEEec
Q psy13856 207 SCGDNSVSLWKENTD---GAWQCITEMG 231 (271)
Q Consensus 207 ~s~D~~v~iw~~~~~---~~~~~~~~~~ 231 (271)
++.||.++||+.-.. .+|....+++
T Consensus 132 ~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~ 159 (361)
T KOG2445|consen 132 ASADGILRIYEAPDPMNLSQWTLQHEIQ 159 (361)
T ss_pred eccCcEEEEEecCCccccccchhhhhhh
Confidence 999999999987543 2455555554
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.5e-14 Score=108.62 Aligned_cols=141 Identities=13% Similarity=0.135 Sum_probs=110.6
Q ss_pred EEEEccCCCeEEeccc---------------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 37 TLISCDTQAHIGIRST---------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 37 ~l~s~s~d~~i~lwd~---------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
++++|-.+|.+.+||+ ..-...|... |.++.|.+.-..=++|+.+..+-+|.+.. .++.+
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qp----vlsldyas~~~rGisgga~dkl~~~Sl~~-s~gsl 241 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQP----VLSLDYASSCDRGISGGADDKLVMYSLNH-STGSL 241 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCc----ceeeeechhhcCCcCCCccccceeeeecc-ccCcc
Confidence 5788889999999998 2223467777 99999987666667788777777887731 11111
Q ss_pred eeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceee
Q psy13856 102 LQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWT 181 (271)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 181 (271)
..-.+..-..-.|..+...| |+..+|+++.|++||+|+.++..+
T Consensus 242 ------------------------------q~~~e~~lknpGv~gvrIRp----D~KIlATAGWD~RiRVyswrtl~p-- 285 (323)
T KOG0322|consen 242 ------------------------------QIRKEITLKNPGVSGVRIRP----DGKILATAGWDHRIRVYSWRTLNP-- 285 (323)
T ss_pred ------------------------------cccceEEecCCCccceEEcc----CCcEEeecccCCcEEEEEeccCCc--
Confidence 11111111234577889999 799999999999999999999887
Q ss_pred eeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEe
Q psy13856 182 PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 182 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~ 218 (271)
...+.-|...|++++|+|+..++|+++.|+.|.+|++
T Consensus 286 LAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 286 LAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 7888899999999999999999999999999999986
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.4e-14 Score=107.41 Aligned_cols=127 Identities=17% Similarity=0.210 Sum_probs=96.7
Q ss_pred ceecccCCCCCCC-EEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCC-eEEEEeCCCcEEEEEeecC
Q psy13856 24 IETYTESPLRIGH-TLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLN-RSATSSFHEAAKHLGTVQS 96 (271)
Q Consensus 24 ~~~~~~~~~~~g~-~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~~~d~~~~ 96 (271)
+-....+|+.... ++|+|..|-.|++.|+ -.++.+|.+. |.++.|+|... .|++|+.||.|++||++
T Consensus 146 VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~----vlaV~Wsp~~e~vLatgsaDg~irlWDiR-- 219 (397)
T KOG4283|consen 146 VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDG----VLAVEWSPSSEWVLATGSADGAIRLWDIR-- 219 (397)
T ss_pred eehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCc----eEEEEeccCceeEEEecCCCceEEEEEee--
Confidence 3345556665544 7888888899999999 7889999999 99999999766 68899999999999996
Q ss_pred CCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC
Q psy13856 97 SSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 176 (271)
+...|....... .......++.-..|.+.|.+++|.. ++.++++++.|.++++|+..+
T Consensus 220 rasgcf~~lD~h------------------n~k~~p~~~~n~ah~gkvngla~tS----d~~~l~~~gtd~r~r~wn~~~ 277 (397)
T KOG4283|consen 220 RASGCFRVLDQH------------------NTKRPPILKTNTAHYGKVNGLAWTS----DARYLASCGTDDRIRVWNMES 277 (397)
T ss_pred cccceeEEeecc------------------cCccCccccccccccceeeeeeecc----cchhhhhccCccceEEeeccc
Confidence 333444322110 0011122333457999999999999 799999999999999999988
Q ss_pred Cc
Q psy13856 177 YV 178 (271)
Q Consensus 177 ~~ 178 (271)
++
T Consensus 278 G~ 279 (397)
T KOG4283|consen 278 GR 279 (397)
T ss_pred Cc
Confidence 75
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.5e-12 Score=102.44 Aligned_cols=184 Identities=11% Similarity=0.072 Sum_probs=117.7
Q ss_pred CCCCCCEE-EEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCc-EEEEEeecCCCCceee
Q psy13856 31 PLRIGHTL-ISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEA-AKHLGTVQSSSPACLQ 103 (271)
Q Consensus 31 ~~~~g~~l-~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~-i~~~d~~~~~~~~~~~ 103 (271)
..++++.+ ++++.|+.|++||+ +..+. +... +.+++|+|+++.+++++.++. +..||. .++....
T Consensus 80 ~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~----~~~~~~~~dg~~l~~~~~~~~~~~~~d~---~~~~~~~ 151 (300)
T TIGR03866 80 LHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVE----PEGMAVSPDGKIVVNTSETTNMAHFIDT---KTYEIVD 151 (300)
T ss_pred ECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCC----cceEEECCCCCEEEEEecCCCeEEEEeC---CCCeEEE
Confidence 34678765 45567899999998 22222 1223 678999999999999887754 555676 4444433
Q ss_pred cc----ceeeEEEeeccceee------eEEEEeeCCceEEeEEecCC-----C--cceEEEEEccCCCCCCcEE-EEEeC
Q psy13856 104 PK----YFKLTVYSTKLTRIL------ILVRICGGDKWIEETKLENH-----S--DWVRDVAWAPSWGLSKCMI-ASCSQ 165 (271)
Q Consensus 104 ~~----~~~~~~~~~~~~~l~------~~v~i~~~~~~~~~~~~~~h-----~--~~v~~v~~~p~~~~~~~~l-~s~~~ 165 (271)
.. ......++.+++.++ +.+.+.+....+....+..+ . .....++|+| ++.++ ++.+.
T Consensus 152 ~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~----dg~~~~~~~~~ 227 (300)
T TIGR03866 152 NVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK----DGKTAFVALGP 227 (300)
T ss_pred EEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECC----CCCEEEEEcCC
Confidence 22 112334556666653 56666222211333333211 1 1234688999 57764 44455
Q ss_pred CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeCCCCceeEEEEecc
Q psy13856 166 DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
++.+.+||.++.+. .... .+...+.+++|+|+|.+|++++ .++.|++||+++. +++.+++.
T Consensus 228 ~~~i~v~d~~~~~~--~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~---~~~~~~~~ 289 (300)
T TIGR03866 228 ANRVAVVDAKTYEV--LDYL-LVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAAL---KVIKSIKV 289 (300)
T ss_pred CCeEEEEECCCCcE--EEEE-EeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCC---cEEEEEEc
Confidence 77899999987664 2222 3445789999999999998864 5899999999976 56666644
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.2e-13 Score=108.99 Aligned_cols=183 Identities=17% Similarity=0.141 Sum_probs=124.7
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
.+....+||+ +++|..+|.|.||+. .+....|.+. |.++..-.+|.+| +|+.|..|..||.. .+..+.
T Consensus 250 l~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~gg----v~~L~~lr~Gtll-SGgKDRki~~Wd~~-y~k~r~ 322 (626)
T KOG2106|consen 250 LCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGG----VFSLCMLRDGTLL-SGGKDRKIILWDDN-YRKLRE 322 (626)
T ss_pred EEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCc----eEEEEEecCccEe-ecCccceEEecccc-cccccc
Confidence 3444456776 789999999999998 3444599999 9999999998765 59999999999941 122222
Q ss_pred eecc---ceeeEEEeeccceeeeEEE---E--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEE
Q psy13856 102 LQPK---YFKLTVYSTKLTRILILVR---I--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT 173 (271)
Q Consensus 102 ~~~~---~~~~~~~~~~~~~l~~~v~---i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd 173 (271)
.+.. +....+....+..++++-+ + .-.+ .......+|....+.++.+| +.+.+++++.|+.+++|+
T Consensus 323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~--~f~~~v~gh~delwgla~hp----s~~q~~T~gqdk~v~lW~ 396 (626)
T KOG2106|consen 323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLEN--GFTLTVQGHGDELWGLATHP----SKNQLLTCGQDKHVRLWN 396 (626)
T ss_pred ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecC--CceEEEEecccceeeEEcCC----ChhheeeccCcceEEEcc
Confidence 2221 2233333333444442111 1 1122 23344567888999999999 688999999999999998
Q ss_pred cCCCce---------------------------ee--------eeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEe
Q psy13856 174 SNDYVT---------------------------WT--------PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 174 ~~~~~~---------------------------~~--------~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~ 218 (271)
-....- |. ...++.-.++++++.|+|+|.+||.|+.|+.|+||.+
T Consensus 397 ~~k~~wt~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~V 476 (626)
T KOG2106|consen 397 DHKLEWTKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRV 476 (626)
T ss_pred CCceeEEEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEE
Confidence 432110 00 1112222568999999999999999999999999999
Q ss_pred CCCC
Q psy13856 219 NTDG 222 (271)
Q Consensus 219 ~~~~ 222 (271)
+.++
T Consensus 477 s~~g 480 (626)
T KOG2106|consen 477 SANG 480 (626)
T ss_pred CCCC
Confidence 8665
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-13 Score=111.15 Aligned_cols=182 Identities=14% Similarity=0.089 Sum_probs=133.5
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
++.|.+++ ++++|+..+..|.|.+-.. +..++ -.+. |.++.|+.|++.|++++.+|.|.+||+ +.
T Consensus 306 ~e~FeVSh--d~~fia~~G~~G~I~lLhakT~eli~s~K-ieG~----v~~~~fsSdsk~l~~~~~~GeV~v~nl---~~ 375 (514)
T KOG2055|consen 306 MERFEVSH--DSNFIAIAGNNGHIHLLHAKTKELITSFK-IEGV----VSDFTFSSDSKELLASGGTGEVYVWNL---RQ 375 (514)
T ss_pred hheeEecC--CCCeEEEcccCceEEeehhhhhhhhheee-eccE----EeeEEEecCCcEEEEEcCCceEEEEec---CC
Confidence 44555555 8889999999999999876 22222 2344 789999999999999999999999999 66
Q ss_pred Cceeeccce------eeEEEeeccceee-----eEEEE-e-----eCCceEEeEEecCCCcceEEEEEccCCCCCCcEEE
Q psy13856 99 PACLQPKYF------KLTVYSTKLTRIL-----ILVRI-C-----GGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIA 161 (271)
Q Consensus 99 ~~~~~~~~~------~~~~~~~~~~~l~-----~~v~i-~-----~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~ 161 (271)
..|+..+.. ...+.+..+.+|| |.|.| . .....+++..+..-...|++++|+| |.++||
T Consensus 376 ~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~----d~qiLA 451 (514)
T KOG2055|consen 376 NSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNH----DAQILA 451 (514)
T ss_pred cceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCc----chhhhh
Confidence 677766521 3334456688888 77777 2 1222255666666678899999999 799988
Q ss_pred EEeC--CCeEEEEEcCCCceeeee-eeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 162 SCSQ--DRKVIIWTSNDYVTWTPF-IMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 162 s~~~--dg~i~iwd~~~~~~~~~~-~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
.+|. +..+++-.+.....+... ....--+.|+|++|+|.|.++|.|..+|.|.+|.+.
T Consensus 452 iaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 452 IASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred hhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 8875 677888887664321000 012223579999999999999999999999999875
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.5e-12 Score=103.36 Aligned_cols=171 Identities=12% Similarity=0.034 Sum_probs=115.2
Q ss_pred CCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeE-EEEeCCCcEEEEEeecCCCCceeecc---
Q psy13856 35 GHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRS-ATSSFHEAAKHLGTVQSSSPACLQPK--- 105 (271)
Q Consensus 35 g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l-~s~s~d~~i~~~d~~~~~~~~~~~~~--- 105 (271)
+..+++++.|+.|++||. ...+..+. . +.+++|+|+++.+ ++++.++.+++||. .+++.....
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~----~~~l~~~~dg~~l~~~~~~~~~v~~~d~---~~~~~~~~~~~~ 72 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQ-R----PRGITLSKDGKLLYVCASDSDTIQVIDL---ATGEVIGTLPSG 72 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCceEEEEECCC-C----CCceEECCCCCEEEEEECCCCeEEEEEC---CCCcEEEeccCC
Confidence 357889999999999998 45555443 3 5789999999876 56778999999998 555544332
Q ss_pred -ceeeEEEeeccceee------eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCC-eEEEEEcCCC
Q psy13856 106 -YFKLTVYSTKLTRIL------ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDR-KVIIWTSNDY 177 (271)
Q Consensus 106 -~~~~~~~~~~~~~l~------~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg-~i~iwd~~~~ 177 (271)
......+..+++.++ +.+++.+......+..+. +...+.+++|+| ++.++++++.++ .+..||.++.
T Consensus 73 ~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~-~~~~~~~~~~~~----dg~~l~~~~~~~~~~~~~d~~~~ 147 (300)
T TIGR03866 73 PDPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIP-VGVEPEGMAVSP----DGKIVVNTSETTNMAHFIDTKTY 147 (300)
T ss_pred CCccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEee-CCCCcceEEECC----CCCEEEEEecCCCeEEEEeCCCC
Confidence 112233445555443 556662222114444444 234467899999 689998888765 5677898776
Q ss_pred ceeeeeeeccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeCCC
Q psy13856 178 VTWTPFIMNTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKENTD 221 (271)
Q Consensus 178 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~~~ 221 (271)
.. ..... .......++|+|++.+|+.++ .++.|++||++++
T Consensus 148 ~~--~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~ 189 (300)
T TIGR03866 148 EI--VDNVL-VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATR 189 (300)
T ss_pred eE--EEEEE-cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc
Confidence 54 22222 223457799999999886554 5899999999876
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.1e-14 Score=127.88 Aligned_cols=181 Identities=14% Similarity=0.148 Sum_probs=131.8
Q ss_pred CCCEEEEccCCCeEEeccc--eeeeccc-cccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCceeeccce--
Q psy13856 34 IGHTLISCDTQAHIGIRST--ISLLQGS-VYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF-- 107 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~--~~~~~~h-~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~-- 107 (271)
.+++||+|+.||.|.|||+ ...-... ......+|.+++|+. ....|++++.+|++-+||++ .....+.....
T Consensus 128 q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr--~~~pii~ls~~~~ 205 (1049)
T KOG0307|consen 128 QGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLR--KKKPIIKLSDTPG 205 (1049)
T ss_pred CCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceecccc--CCCcccccccCCC
Confidence 3559999999999999999 1111111 222445699999987 44578999999999999995 33333433322
Q ss_pred ----eeEEEeecc-ceee--------eEEEEee-CCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEE
Q psy13856 108 ----KLTVYSTKL-TRIL--------ILVRICG-GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT 173 (271)
Q Consensus 108 ----~~~~~~~~~-~~l~--------~~v~i~~-~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd 173 (271)
....|..+. ..++ ..|.+++ ...-..++++++|...|.++.|++. |.++++|++.|+++.+|+
T Consensus 206 ~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~---D~~lllSsgkD~~ii~wN 282 (1049)
T KOG0307|consen 206 RMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQ---DPRLLLSSGKDNRIICWN 282 (1049)
T ss_pred ccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCC---CchhhhcccCCCCeeEec
Confidence 123333331 2222 4444422 1111467788899999999999998 889999999999999999
Q ss_pred cCCCceeeeeeeccCCCCeEEEEEecCC-CEEEEEECCCcEEEEEeCCC
Q psy13856 174 SNDYVTWTPFIMNTFDDVVWNVSWSLTG-DILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 174 ~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~v~iw~~~~~ 221 (271)
.++++. +..+....+++..+.|+|.. ..+++++.||.|.||.+...
T Consensus 283 ~~tgEv--l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~ 329 (1049)
T KOG0307|consen 283 PNTGEV--LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGT 329 (1049)
T ss_pred CCCceE--eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecC
Confidence 999886 66777777899999999964 58889999999999999754
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=2.9e-13 Score=101.87 Aligned_cols=171 Identities=12% Similarity=0.012 Sum_probs=120.3
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc---------------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEE
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST---------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKH 90 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~---------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~ 90 (271)
+|.-+..|.+++|+.|+.+|.|-+..+ +-..++|.++ |+.++|.. .+|++|+ ||.|+-
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgp----iy~~~f~d--~~Lls~g-dG~V~g 85 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGP----IYYLAFHD--DFLLSGG-DGLVYG 85 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCC----eeeeeeeh--hheeecc-CceEEE
Confidence 455556678999999999999999987 4455899999 99999983 4677775 499998
Q ss_pred EEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEE
Q psy13856 91 LGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVI 170 (271)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~ 170 (271)
|.-.+ ..+..... . +++-. .+.+.-.-.--.|+++...|. .+-++.++.|+.++
T Consensus 86 w~W~E--~~es~~~K----~--------------lwe~~--~P~~~~~~evPeINam~ldP~----enSi~~AgGD~~~y 139 (325)
T KOG0649|consen 86 WEWNE--EEESLATK----R--------------LWEVK--IPMQVDAVEVPEINAMWLDPS----ENSILFAGGDGVIY 139 (325)
T ss_pred eeehh--hhhhccch----h--------------hhhhc--CccccCcccCCccceeEeccC----CCcEEEecCCeEEE
Confidence 87531 11100000 0 00000 011110011235789999995 44444445799999
Q ss_pred EEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccc
Q psy13856 171 IWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 171 iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
-||+++++. ...+.+|++-|.++.-......+++|++||++++||.++. ++++.++...
T Consensus 140 ~~dlE~G~i--~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~---k~v~~ie~yk 198 (325)
T KOG0649|consen 140 QVDLEDGRI--QREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQ---KHVSMIEPYK 198 (325)
T ss_pred EEEecCCEE--EEEEcCCcceeeeeeecccCcceeecCCCccEEEEecccc---ceeEEecccc
Confidence 999999986 7789999999999988555566889999999999999988 6777776543
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.2e-12 Score=99.00 Aligned_cols=163 Identities=13% Similarity=0.059 Sum_probs=111.5
Q ss_pred CeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEee-cCCCCceeeccceeeEEEeec---
Q psy13856 45 AHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTV-QSSSPACLQPKYFKLTVYSTK--- 115 (271)
Q Consensus 45 ~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~~--- 115 (271)
+.+.|||- +..+. .... |.++.++++ +++.. ..+.|++|... +.+...++.+...|..+.+..
T Consensus 75 NkviIWDD~k~~~i~el~-f~~~----I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~ 146 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELS-FNSE----IKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTS 146 (346)
T ss_pred ceEEEEecccCcEEEEEE-eccc----eeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCC
Confidence 58999996 22221 2233 788888765 45554 56788899874 112222333333233333322
Q ss_pred -cceee------eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCe-EEEEEcCCCceeeeeee
Q psy13856 116 -LTRIL------ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK-VIIWTSNDYVTWTPFIM 185 (271)
Q Consensus 116 -~~~l~------~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~ 185 (271)
...++ |.|.| ........-..+.+|.+.|.+++.+- +|.++||+|..|+ |||||..+++. ...+
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~----~Gt~vATaStkGTLIRIFdt~~g~~--l~E~ 220 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNL----QGTLVATASTKGTLIRIFDTEDGTL--LQEL 220 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcC----CccEEEEeccCcEEEEEEEcCCCcE--eeee
Confidence 23444 77887 12221113466788999999999998 6999999999997 78999999987 4444
Q ss_pred ccC--CCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 186 NTF--DDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 186 ~~h--~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
..- ...|++++|+|+..+|+++|+-|+|+||.++..
T Consensus 221 RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 221 RRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 432 457999999999999999999999999999753
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.7e-13 Score=113.41 Aligned_cols=91 Identities=16% Similarity=0.090 Sum_probs=78.7
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEE
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRD 146 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~ 146 (271)
|..++|+|||++||+.|+||.+|+|+.. +. +++..++..-+...|
T Consensus 293 in~f~FS~DG~~LA~VSqDGfLRvF~fd---t~--------------------------------eLlg~mkSYFGGLLC 337 (636)
T KOG2394|consen 293 INEFAFSPDGKYLATVSQDGFLRIFDFD---TQ--------------------------------ELLGVMKSYFGGLLC 337 (636)
T ss_pred ccceeEcCCCceEEEEecCceEEEeecc---HH--------------------------------HHHHHHHhhccceEE
Confidence 7789999999999999999999999982 11 344444555678899
Q ss_pred EEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEe
Q psy13856 147 VAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWS 198 (271)
Q Consensus 147 v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~ 198 (271)
|+|+| ||+||++|++|-.|.||.+...+. +..-++|.++|..|+|.
T Consensus 338 vcWSP----DGKyIvtGGEDDLVtVwSf~erRV--VARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 338 VCWSP----DGKYIVTGGEDDLVTVWSFEERRV--VARGQGHKSWVSVVAFD 383 (636)
T ss_pred EEEcC----CccEEEecCCcceEEEEEeccceE--EEeccccccceeeEeec
Confidence 99999 899999999999999999988775 77789999999999998
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.48 E-value=7.8e-12 Score=99.29 Aligned_cols=141 Identities=13% Similarity=0.127 Sum_probs=108.6
Q ss_pred CCCEEEEccCCCeEEeccc-----e---eeeccccccccccceEEEEcCCCCeEEEEe--CCCcEEEEEeecCCCCceee
Q psy13856 34 IGHTLISCDTQAHIGIRST-----I---SLLQGSVYLRRESNKAGALSPKLNRSATSS--FHEAAKHLGTVQSSSPACLQ 103 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~---~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s--~d~~i~~~d~~~~~~~~~~~ 103 (271)
|.++|+.+-. ..|.|||+ + .....+... +.++.+++.+.+++--+ ..|.|.+||..
T Consensus 96 Nr~RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~g----l~AlS~n~~n~ylAyp~s~t~GdV~l~d~~--------- 161 (391)
T KOG2110|consen 96 NRKRLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKG----LCALSPNNANCYLAYPGSTTSGDVVLFDTI--------- 161 (391)
T ss_pred ccceEEEEEc-ccEEEEecccceeehhhhccCCCccc----eEeeccCCCCceEEecCCCCCceEEEEEcc---------
Confidence 6678888887 45999999 2 222334444 55566666666777533 45788899972
Q ss_pred ccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCe-EEEEEcCCCceeee
Q psy13856 104 PKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK-VIIWTSNDYVTWTP 182 (271)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~ 182 (271)
..+.+..+..|.+.+.+++|+| +|.+||+++..|+ |||+.+.++.. .
T Consensus 162 --------------------------nl~~v~~I~aH~~~lAalafs~----~G~llATASeKGTVIRVf~v~~G~k--l 209 (391)
T KOG2110|consen 162 --------------------------NLQPVNTINAHKGPLAALAFSP----DGTLLATASEKGTVIRVFSVPEGQK--L 209 (391)
T ss_pred --------------------------cceeeeEEEecCCceeEEEECC----CCCEEEEeccCceEEEEEEcCCccE--e
Confidence 2256777889999999999999 7999999999987 67999988876 4
Q ss_pred eeeccC--CCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 183 FIMNTF--DDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 183 ~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
..+..- ...|++++|+|++.+|++.|..++|+||+++.
T Consensus 210 ~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 210 YEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred eeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 555433 34689999999999999999999999999974
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.4e-12 Score=95.80 Aligned_cols=107 Identities=16% Similarity=0.237 Sum_probs=81.6
Q ss_pred ceEEEEcCCCCeEEEE--eCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcce
Q psy13856 67 NKAGALSPKLNRSATS--SFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWV 144 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~--s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v 144 (271)
|.+++|+|+|+.++.. ..+..+.+||. + . +.+..+. ...+
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~---~-------------------------------~--~~i~~~~--~~~~ 103 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDV---K-------------------------------G--KKIFSFG--TQPR 103 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcC---c-------------------------------c--cEeEeec--CCCc
Confidence 8999999999987554 46778999997 1 1 3333443 4567
Q ss_pred EEEEEccCCCCCCcEEEEEeC---CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEEC------CCcEEE
Q psy13856 145 RDVAWAPSWGLSKCMIASCSQ---DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG------DNSVSL 215 (271)
Q Consensus 145 ~~v~~~p~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~------D~~v~i 215 (271)
..|.|+| +|++++.++. .|.+.+||.++.+. +... .|. .+..++|+|+|++|+++.. |+.++|
T Consensus 104 n~i~wsP----~G~~l~~~g~~n~~G~l~~wd~~~~~~--i~~~-~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~I 175 (194)
T PF08662_consen 104 NTISWSP----DGRFLVLAGFGNLNGDLEFWDVRKKKK--ISTF-EHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKI 175 (194)
T ss_pred eEEEECC----CCCEEEEEEccCCCcEEEEEECCCCEE--eecc-ccC-cEEEEEEcCCCCEEEEEEeccceeccccEEE
Confidence 7899999 6999999875 36799999997554 2222 233 5789999999999999874 788999
Q ss_pred EEeC
Q psy13856 216 WKEN 219 (271)
Q Consensus 216 w~~~ 219 (271)
|++.
T Consensus 176 w~~~ 179 (194)
T PF08662_consen 176 WSFQ 179 (194)
T ss_pred EEec
Confidence 9986
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.7e-12 Score=110.37 Aligned_cols=181 Identities=13% Similarity=0.108 Sum_probs=125.1
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
.++....-|||..|+.+.. ..+.+||. ++.+++|.+. |++++|+.||+.+++|+.|..+.+|.- +..
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDt----VycVAys~dGkrFASG~aDK~VI~W~~---klE 85 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDT----VYCVAYAKDGKRFASGSADKSVIIWTS---KLE 85 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccce----EEEEEEccCCceeccCCCceeEEEecc---ccc
Confidence 4455556689997777666 68899998 8999999999 999999999999999999999988886 322
Q ss_pred ceeecc---ceeeEEEeeccceee----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEE
Q psy13856 100 ACLQPK---YFKLTVYSTKLTRIL----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172 (271)
Q Consensus 100 ~~~~~~---~~~~~~~~~~~~~l~----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iw 172 (271)
..++.. ......|.+....++ ...-++...+ +.+...+ ....+.+++|.. ||.+++.|..||+|.+-
T Consensus 86 G~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~q-K~V~K~k-ss~R~~~CsWtn----DGqylalG~~nGTIsiR 159 (1081)
T KOG1538|consen 86 GILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQ-KSVSKHK-SSSRIICCSWTN----DGQYLALGMFNGTISIR 159 (1081)
T ss_pred ceeeeccCCeeeEeecCchHHHhhhcchhhccccChhh-hhHHhhh-hheeEEEeeecC----CCcEEEEeccCceEEee
Confidence 222211 123333333344443 2222211110 1111111 235678899988 89999999999999998
Q ss_pred EcCCCceeeeeeeccCCCCeEEEEEecC-----CCEEEEEECCCcEEEEEeC
Q psy13856 173 TSNDYVTWTPFIMNTFDDVVWNVSWSLT-----GDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 173 d~~~~~~~~~~~~~~h~~~v~~v~~~~~-----g~~l~s~s~D~~v~iw~~~ 219 (271)
+....+...+..-.+..++|++++|+|. ...++......++.++.++
T Consensus 160 Nk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls 211 (1081)
T KOG1538|consen 160 NKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS 211 (1081)
T ss_pred cCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec
Confidence 7655443222333456789999999996 2578889888999999886
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-11 Score=105.42 Aligned_cols=188 Identities=13% Similarity=0.025 Sum_probs=134.0
Q ss_pred eeEEeeceeEeecccc-cc---------ceecccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccce
Q psy13856 6 WLLVSCDGLLMTLKPT-LE---------IETYTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNK 68 (271)
Q Consensus 6 ~~~~~~~~~~~~~~~~-~~---------~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~ 68 (271)
++-..-+|.+.++... .+ ..+++....|.++.++.|++||.+.+.+. -..+...++. |.
T Consensus 83 LFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sR----vL 158 (691)
T KOG2048|consen 83 LFSSGLSGSITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSR----VL 158 (691)
T ss_pred EEeecCCceEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccce----EE
Confidence 3333446777665421 11 22344445577889999999997777766 2344455677 99
Q ss_pred EEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEec-CCCcceEEE
Q psy13856 69 AGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLE-NHSDWVRDV 147 (271)
Q Consensus 69 ~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~-~h~~~v~~v 147 (271)
+++|+|++..+++|+.||.|++||. ..+..+... + ..+..+. +...-|++|
T Consensus 159 slsw~~~~~~i~~Gs~Dg~Iriwd~---~~~~t~~~~----------------------~---~~~d~l~k~~~~iVWSv 210 (691)
T KOG2048|consen 159 SLSWNPTGTKIAGGSIDGVIRIWDV---KSGQTLHII----------------------T---MQLDRLSKREPTIVWSV 210 (691)
T ss_pred EEEecCCccEEEecccCceEEEEEc---CCCceEEEe----------------------e---ecccccccCCceEEEEE
Confidence 9999999999999999999999998 443332210 0 0011111 133457888
Q ss_pred EEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCc-eeE
Q psy13856 148 AWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGA-WQC 226 (271)
Q Consensus 148 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~-~~~ 226 (271)
.|-. ...|++|..-|+|.+||...+.. .+....|...|.+++.++++..+++++.|++|.-|...+++. |..
T Consensus 211 ~~Lr-----d~tI~sgDS~G~V~FWd~~~gTL--iqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~ 283 (691)
T KOG2048|consen 211 LFLR-----DSTIASGDSAGTVTFWDSIFGTL--IQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVI 283 (691)
T ss_pred EEee-----cCcEEEecCCceEEEEcccCcch--hhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceee
Confidence 8765 46899999999999999999886 677778899999999999999999999999999998876643 655
Q ss_pred EEEecc
Q psy13856 227 ITEMGK 232 (271)
Q Consensus 227 ~~~~~~ 232 (271)
......
T Consensus 284 ~~~r~~ 289 (691)
T KOG2048|consen 284 NSRRDL 289 (691)
T ss_pred eccccC
Confidence 444333
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.5e-12 Score=104.64 Aligned_cols=173 Identities=13% Similarity=0.130 Sum_probs=113.3
Q ss_pred CCCCEEEEccCCCeEEeccc----e-eeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEee--cCCCCceeec
Q psy13856 33 RIGHTLISCDTQAHIGIRST----I-SLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTV--QSSSPACLQP 104 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~----~-~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~--~~~~~~~~~~ 104 (271)
+.+.-++.|=.-|.+.+.|. + +.+..........|+++.|-| +...++.+-.+|.++++|.. .+.+..+...
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 45555666766688888887 1 111111111113389999998 44567777899999999851 0011111111
Q ss_pred cceeeEEEeeccceee-eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeee
Q psy13856 105 KYFKLTVYSTKLTRIL-ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPF 183 (271)
Q Consensus 105 ~~~~~~~~~~~~~~l~-~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 183 (271)
-..+..++ .+-+-..+. .++....--++.|...+|+| ||.+||+.+.||.+||||..+.+. ..
T Consensus 263 --------~k~~~~f~i~t~ksk~~r--NPv~~w~~~~g~in~f~FS~----DG~~LA~VSqDGfLRvF~fdt~eL--lg 326 (636)
T KOG2394|consen 263 --------LKDGDQFAILTSKSKKTR--NPVARWHIGEGSINEFAFSP----DGKYLATVSQDGFLRIFDFDTQEL--LG 326 (636)
T ss_pred --------cCCCCeeEEeeeeccccC--CccceeEeccccccceeEcC----CCceEEEEecCceEEEeeccHHHH--HH
Confidence 11122222 000001111 23333333456899999999 899999999999999999998765 55
Q ss_pred eeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 184 IMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 184 ~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.++..-+...||+|+|||+|+++|++|--|.||.+...
T Consensus 327 ~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~er 364 (636)
T KOG2394|consen 327 VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEER 364 (636)
T ss_pred HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccc
Confidence 66677789999999999999999999999999999765
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-12 Score=109.19 Aligned_cols=132 Identities=18% Similarity=0.105 Sum_probs=106.8
Q ss_pred eeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEe
Q psy13856 55 LLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEE 134 (271)
Q Consensus 55 ~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~ 134 (271)
++..|.+. |+.++|+|..-.|++++.|+.+++|.+. .... .....++++
T Consensus 289 tl~s~~d~----ir~l~~~~sep~lit~sed~~lk~WnLq---k~~~------------------------s~~~~~epi 337 (577)
T KOG0642|consen 289 TLRSHDDC----IRALAFHPSEPVLITASEDGTLKLWNLQ---KAKK------------------------SAEKDVEPI 337 (577)
T ss_pred eeecchhh----hhhhhcCCCCCeEEEeccccchhhhhhc---ccCC------------------------ccccceeee
Confidence 45567777 8999999988899999999999999982 1100 012345789
Q ss_pred EEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC------c-e-eeeeeeccCCCCeEEEEEecCCCEEEE
Q psy13856 135 TKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY------V-T-WTPFIMNTFDDVVWNVSWSLTGDILTV 206 (271)
Q Consensus 135 ~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~------~-~-~~~~~~~~h~~~v~~v~~~~~g~~l~s 206 (271)
.+|.+|.++|.|+++.+ .+..+.+|+.||+|+.|++... . . .-...+.||.++|+.+++++....|++
T Consensus 338 ~tfraH~gPVl~v~v~~----n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Lls 413 (577)
T KOG0642|consen 338 LTFRAHEGPVLCVVVPS----NGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLS 413 (577)
T ss_pred EEEecccCceEEEEecC----CceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceee
Confidence 99999999999999999 4999999999999999966421 0 0 013357899999999999999899999
Q ss_pred EECCCcEEEEEeCCC
Q psy13856 207 SCGDNSVSLWKENTD 221 (271)
Q Consensus 207 ~s~D~~v~iw~~~~~ 221 (271)
++.||++++|+....
T Consensus 414 cs~DgTvr~w~~~~~ 428 (577)
T KOG0642|consen 414 CSSDGTVRLWEPTEE 428 (577)
T ss_pred ecCCceEEeeccCCc
Confidence 999999999998654
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.9e-12 Score=107.45 Aligned_cols=152 Identities=18% Similarity=0.097 Sum_probs=101.5
Q ss_pred eeEEeeceeEeeccccccce---------ecccCCCCCCCEEEEccCCCeEEeccc------------------------
Q psy13856 6 WLLVSCDGLLMTLKPTLEIE---------TYTESPLRIGHTLISCDTQAHIGIRST------------------------ 52 (271)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~g~~l~s~s~d~~i~lwd~------------------------ 52 (271)
.++.++||...-+...-.++ +.+....+||.-|++++.||.|++|.-
T Consensus 78 ~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S 157 (737)
T KOG1524|consen 78 LLICSNDGRFVILNKSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNS 157 (737)
T ss_pred EEEEcCCceEEEecccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCC
Confidence 45556688877765433332 345556789999999999999999986
Q ss_pred ---------------------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEE
Q psy13856 53 ---------------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTV 111 (271)
Q Consensus 53 ---------------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 111 (271)
+-.+++|.+. |.++.|++..+.+++|+.|-..++||.
T Consensus 158 ~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGi----iL~~~W~~~s~lI~sgGED~kfKvWD~------------------ 215 (737)
T KOG1524|consen 158 NSIVFCQGGHISIKPLAANSKIIRWRAHDGL----VLSLSWSTQSNIIASGGEDFRFKIWDA------------------ 215 (737)
T ss_pred CceEEecCCeEEEeecccccceeEEeccCcE----EEEeecCccccceeecCCceeEEeecc------------------
Confidence 1223445555 555555555555555555555555553
Q ss_pred EeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCC
Q psy13856 112 YSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDV 191 (271)
Q Consensus 112 ~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~ 191 (271)
.+ ..+..-..|+.+|++|+|+| + ..++.++. .+++ + .....+.
T Consensus 216 ----------------~G--~~Lf~S~~~ey~ITSva~np----d-~~~~v~S~-nt~R---~----------~~p~~GS 258 (737)
T KOG1524|consen 216 ----------------QG--ANLFTSAAEEYAITSVAFNP----E-KDYLLWSY-NTAR---F----------SSPRVGS 258 (737)
T ss_pred ----------------cC--cccccCChhccceeeeeecc----c-cceeeeee-eeee---e----------cCCCccc
Confidence 23 33444456899999999999 4 55655553 2333 1 2223568
Q ss_pred eEEEEEecCCCEEEEEECCCcEEEE
Q psy13856 192 VWNVSWSLTGDILTVSCGDNSVSLW 216 (271)
Q Consensus 192 v~~v~~~~~g~~l~s~s~D~~v~iw 216 (271)
|..++|++||..+++|...|.+.+=
T Consensus 259 ifnlsWS~DGTQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 259 IFNLSWSADGTQATCGTSTGQLIVA 283 (737)
T ss_pred eEEEEEcCCCceeeccccCceEEEe
Confidence 9999999999999999999876543
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.8e-12 Score=96.80 Aligned_cols=163 Identities=18% Similarity=0.222 Sum_probs=114.1
Q ss_pred ceeEeeccccccceecccCCCCCC-CEEEEccCCCeEEeccc------eeeeccc--cccccccceEEEEcC-CCCeEEE
Q psy13856 12 DGLLMTLKPTLEIETYTESPLRIG-HTLISCDTQAHIGIRST------ISLLQGS--VYLRRESNKAGALSP-KLNRSAT 81 (271)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~g-~~l~s~s~d~~i~lwd~------~~~~~~h--~~~~~~~i~~~~~s~-~~~~l~s 81 (271)
.|.+.|---.++-++|.......+ +.+|+.+.||.+|++|+ .-.++.. ... ..-++|++ |.+++|+
T Consensus 185 ~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~p----LlRLswnkqDpnymAT 260 (364)
T KOG0290|consen 185 SGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTP----LLRLSWNKQDPNYMAT 260 (364)
T ss_pred ccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCc----ceeeccCcCCchHHhh
Confidence 444555434455667777777655 48999999999999999 1111111 223 56788886 6778888
Q ss_pred EeCCC-cEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEE
Q psy13856 82 SSFHE-AAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMI 160 (271)
Q Consensus 82 ~s~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l 160 (271)
-..|. .|.+.|++ ... ..+..+++|.+.|++|+|.|. ....|
T Consensus 261 f~~dS~~V~iLDiR--------------------------------~P~--tpva~L~~H~a~VNgIaWaPh---S~~hi 303 (364)
T KOG0290|consen 261 FAMDSNKVVILDIR--------------------------------VPC--TPVARLRNHQASVNGIAWAPH---SSSHI 303 (364)
T ss_pred hhcCCceEEEEEec--------------------------------CCC--cceehhhcCcccccceEecCC---CCcee
Confidence 76554 46677773 122 678889999999999999998 78999
Q ss_pred EEEeCCCeEEEEEcCCCce--e-eeeeeccCCCCeEEEEEec-CCCEEEEEECCCcEEEE
Q psy13856 161 ASCSQDRKVIIWTSNDYVT--W-TPFIMNTFDDVVWNVSWSL-TGDILTVSCGDNSVSLW 216 (271)
Q Consensus 161 ~s~~~dg~i~iwd~~~~~~--~-~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~v~iw 216 (271)
++|+.|..+.+||+..... . .......-.+.|+.+.|++ .+..++.+. ++++.|.
T Consensus 304 ctaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwiai~~-~kkleiL 362 (364)
T KOG0290|consen 304 CTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWIAICF-GKKLEIL 362 (364)
T ss_pred eecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEEEEEe-cCeeeEE
Confidence 9999999999999976432 0 0111123467899999997 467777775 4555554
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.2e-13 Score=118.00 Aligned_cols=105 Identities=21% Similarity=0.204 Sum_probs=90.6
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
..+|++...+.|.++++|+.|..++||.. +....||.+. |+.++.+.+..+++++|.|..|++|.+.
T Consensus 191 naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~d----itdlavs~~n~~iaaaS~D~vIrvWrl~---- 262 (1113)
T KOG0644|consen 191 NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGD----ITDLAVSSNNTMIAAASNDKVIRVWRLP---- 262 (1113)
T ss_pred hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccc----cchhccchhhhhhhhcccCceEEEEecC----
Confidence 34788888899999999999999999998 7889999999 9999999999999999999999999982
Q ss_pred CceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcC
Q psy13856 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSN 175 (271)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 175 (271)
++ .++..+.+|++.|++++|+|. ++.+.||++++||.+
T Consensus 263 -----------------------------~~--~pvsvLrghtgavtaiafsP~--------~sss~dgt~~~wd~r 300 (1113)
T KOG0644|consen 263 -----------------------------DG--APVSVLRGHTGAVTAIAFSPR--------ASSSDDGTCRIWDAR 300 (1113)
T ss_pred -----------------------------CC--chHHHHhccccceeeeccCcc--------ccCCCCCceEecccc
Confidence 33 566677788888888888884 166778888888877
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.7e-11 Score=104.69 Aligned_cols=184 Identities=17% Similarity=0.117 Sum_probs=120.0
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-----------eeeeccccccccccceEEEEcCCC--CeEEEEeCCCcEEEEEe
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-----------ISLLQGSVYLRRESNKAGALSPKL--NRSATSSFHEAAKHLGT 93 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-----------~~~~~~h~~~~~~~i~~~~~s~~~--~~l~s~s~d~~i~~~d~ 93 (271)
+...| .+..++|.|..+|.|.+||+ -.....|... +..+.|-.+. .-+++++.||.|..|++
T Consensus 248 ~~f~p-~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~----v~~vvW~~~~~~~~f~s~ssDG~i~~W~~ 322 (555)
T KOG1587|consen 248 LKFCP-FDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEP----VTAVVWLQNEHNTEFFSLSSDGSICSWDT 322 (555)
T ss_pred EEecc-CCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcC----eEEEEEeccCCCCceEEEecCCcEeeeec
Confidence 33334 37789999999999999999 1122356666 8888887644 45999999999988976
Q ss_pred ecCCCC---ceeeccc-----------eeeEEEeec--cceee----eEEEE-eeCC-c------eEEeEEecCCCcceE
Q psy13856 94 VQSSSP---ACLQPKY-----------FKLTVYSTK--LTRIL----ILVRI-CGGD-K------WIEETKLENHSDWVR 145 (271)
Q Consensus 94 ~~~~~~---~~~~~~~-----------~~~~~~~~~--~~~l~----~~v~i-~~~~-~------~~~~~~~~~h~~~v~ 145 (271)
...... .+..... .+...+... ..+++ |.|.- ...+ + ++....+..|.++|.
T Consensus 323 ~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~ 402 (555)
T KOG1587|consen 323 DMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVY 402 (555)
T ss_pred cccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceE
Confidence 421111 0111111 111111111 22333 44444 1111 0 122334556889999
Q ss_pred EEEEccCCCCCCcEEEEEeCCCeEEEEEcC-CCceeeeeeeccCCCCeEEEEEecC-CCEEEEEECCCcEEEEEeCCC
Q psy13856 146 DVAWAPSWGLSKCMIASCSQDRKVIIWTSN-DYVTWTPFIMNTFDDVVWNVSWSLT-GDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~v~~~~~-g~~l~s~s~D~~v~iw~~~~~ 221 (271)
++.++|- ....|++++ |.+++||... ...+ ...+..+...|++++|||. ...++++..||.|.|||+...
T Consensus 403 ~v~~nPF---~~k~fls~g-DW~vriWs~~~~~~P--l~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 403 AVSRNPF---YPKNFLSVG-DWTVRIWSEDVIASP--LLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred eeecCCC---ccceeeeec-cceeEeccccCCCCc--chhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 9999995 355666666 9999999987 4343 5566777788999999996 567888888999999999743
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-12 Score=107.36 Aligned_cols=134 Identities=10% Similarity=0.047 Sum_probs=108.1
Q ss_pred eEEeccceeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEE
Q psy13856 46 HIGIRSTISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRI 125 (271)
Q Consensus 46 ~i~lwd~~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i 125 (271)
.|+--++.+.+.+|++- |.+++|+.+|.+|++||.|..+.+||..
T Consensus 36 ~lrrL~lE~eL~GH~GC----VN~LeWn~dG~lL~SGSDD~r~ivWd~~------------------------------- 80 (758)
T KOG1310|consen 36 WLRRLDLEAELTGHTGC----VNCLEWNADGELLASGSDDTRLIVWDPF------------------------------- 80 (758)
T ss_pred HHhhcchhhhhccccce----ecceeecCCCCEEeecCCcceEEeecch-------------------------------
Confidence 33334446788999999 9999999999999999999999999973
Q ss_pred eeCCceEEeEEe-cCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc--------eeeeeeeccCCCCeEEEE
Q psy13856 126 CGGDKWIEETKL-ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV--------TWTPFIMNTFDDVVWNVS 196 (271)
Q Consensus 126 ~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~~~h~~~v~~v~ 196 (271)
..++++.+ .+|...|.++.|-|.- ..+.+++|..|..|+++|+...+ ......+..|...|..++
T Consensus 81 ----~~KllhsI~TgHtaNIFsvKFvP~t--nnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria 154 (758)
T KOG1310|consen 81 ----EYKLLHSISTGHTANIFSVKFVPYT--NNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIA 154 (758)
T ss_pred ----hcceeeeeecccccceeEEeeeccC--CCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhhee
Confidence 11333333 5899999999999952 46788999999999999998421 111445667889999999
Q ss_pred EecCC-CEEEEEECCCcEEEEEeCC
Q psy13856 197 WSLTG-DILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 197 ~~~~g-~~l~s~s~D~~v~iw~~~~ 220 (271)
-.|++ ..+.++++||+++-+|++.
T Consensus 155 ~~p~~PhtfwsasEDGtirQyDiRE 179 (758)
T KOG1310|consen 155 TAPNGPHTFWSASEDGTIRQYDIRE 179 (758)
T ss_pred cCCCCCceEEEecCCcceeeecccC
Confidence 99987 7899999999999999975
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=8.4e-12 Score=102.72 Aligned_cols=173 Identities=10% Similarity=0.075 Sum_probs=119.0
Q ss_pred EEEEccCCCeEEeccc------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-ce--
Q psy13856 37 TLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-YF-- 107 (271)
Q Consensus 37 ~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~~-- 107 (271)
.+++.+.|..+++|.- +..+..-++.. -.|++......++++|+..+.|++||+ +...+.+.. .+
T Consensus 49 vvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~---~~Cv~~~s~S~y~~sgG~~~~Vkiwdl---~~kl~hr~lkdh~s 122 (673)
T KOG4378|consen 49 VVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDN---AFCVACASQSLYEISGGQSGCVKIWDL---RAKLIHRFLKDHQS 122 (673)
T ss_pred EEeecCCceeEEEecccCCCCccceeeccccch---HHHHhhhhcceeeeccCcCceeeehhh---HHHHHhhhccCCcc
Confidence 4566678899999986 22222112212 234444444489999999999999999 655555544 33
Q ss_pred --eeEEEeeccceee-----eEEEE--eeCCceEEeEEecCC-CcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC
Q psy13856 108 --KLTVYSTKLTRIL-----ILVRI--CGGDKWIEETKLENH-SDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY 177 (271)
Q Consensus 108 --~~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 177 (271)
....+.....+++ |.|.| ..++ .....|... ...|.-+.|+|. ...+|.+++.+|.|.+||+...
T Consensus 123 tvt~v~YN~~DeyiAsvs~gGdiiih~~~t~--~~tt~f~~~sgqsvRll~ys~s---kr~lL~~asd~G~VtlwDv~g~ 197 (673)
T KOG4378|consen 123 TVTYVDYNNTDEYIASVSDGGDIIIHGTKTK--QKTTTFTIDSGQSVRLLRYSPS---KRFLLSIASDKGAVTLWDVQGM 197 (673)
T ss_pred eeEEEEecCCcceeEEeccCCcEEEEecccC--ccccceecCCCCeEEEeecccc---cceeeEeeccCCeEEEEeccCC
Confidence 2333334466666 66666 3333 233344322 345678999996 5678889999999999999876
Q ss_pred ceeeeeeeccCCCCeEEEEEecC-CCEEEEEECCCcEEEEEeCCC
Q psy13856 178 VTWTPFIMNTFDDVVWNVSWSLT-GDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 178 ~~~~~~~~~~h~~~v~~v~~~~~-g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.++ ......|..+...++|+|. ..+|++.+.|..|.+||....
T Consensus 198 sp~-~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~ 241 (673)
T KOG4378|consen 198 SPI-FHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQ 241 (673)
T ss_pred Ccc-cchhhhccCCcCcceecCCccceEEEecccceEEEeecccc
Confidence 653 4456789999999999995 567889999999999999755
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.9e-11 Score=90.01 Aligned_cols=142 Identities=15% Similarity=0.114 Sum_probs=103.8
Q ss_pred CCEEEEccCCCeEEeccc-------------eeeecccc-ccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 35 GHTLISCDTQAHIGIRST-------------ISLLQGSV-YLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 35 g~~l~s~s~d~~i~lwd~-------------~~~~~~h~-~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
..+|++|+. |.|+=|.. .....-|. ....-+|+++-..|..+.++.++.|+.++.||+
T Consensus 72 d~~Lls~gd-G~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dl------- 143 (325)
T KOG0649|consen 72 DDFLLSGGD-GLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDL------- 143 (325)
T ss_pred hhheeeccC-ceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEe-------
Confidence 456777776 99999987 11112233 223456889999998888888889999999998
Q ss_pred eeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCcee
Q psy13856 101 CLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTW 180 (271)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 180 (271)
+++ +..++++||++.|.++.-.. ....+.+|+.||++|+||.++.++
T Consensus 144 --------------------------E~G--~i~r~~rGHtDYvH~vv~R~----~~~qilsG~EDGtvRvWd~kt~k~- 190 (325)
T KOG0649|consen 144 --------------------------EDG--RIQREYRGHTDYVHSVVGRN----ANGQILSGAEDGTVRVWDTKTQKH- 190 (325)
T ss_pred --------------------------cCC--EEEEEEcCCcceeeeeeecc----cCcceeecCCCccEEEEeccccce-
Confidence 456 67788999999999998854 356889999999999999999887
Q ss_pred eeeeecc--CC--------CCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 181 TPFIMNT--FD--------DVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 181 ~~~~~~~--h~--------~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+..+.. |. ..|-+++- +..+|++|+ ...+.+|.+++.
T Consensus 191 -v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrss 237 (325)
T KOG0649|consen 191 -VSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSS 237 (325)
T ss_pred -eEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCC
Confidence 343332 21 24555554 455777776 457999999865
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=1e-11 Score=104.26 Aligned_cols=100 Identities=12% Similarity=0.116 Sum_probs=80.2
Q ss_pred EEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCC
Q psy13856 132 IEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDN 211 (271)
Q Consensus 132 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 211 (271)
..++.+.....+|.+++.+| .|.-|+.|+.|+.+..+|+.-.... .+.+.-|..++++|+|++.-.++++|+.||
T Consensus 598 elvKkL~tg~kwiS~msihp----~GDnli~gs~d~k~~WfDldlsskP-yk~lr~H~~avr~Va~H~ryPLfas~sdDg 672 (733)
T KOG0650|consen 598 ELVKKLLTGSKWISSMSIHP----NGDNLILGSYDKKMCWFDLDLSSKP-YKTLRLHEKAVRSVAFHKRYPLFASGSDDG 672 (733)
T ss_pred HHHHHHhcCCeeeeeeeecC----CCCeEEEecCCCeeEEEEcccCcch-hHHhhhhhhhhhhhhhccccceeeeecCCC
Confidence 34455555667899999999 5899999999999999999865431 567888999999999999999999999999
Q ss_pred cEEEEEeC------CCCceeEEEEecccchh
Q psy13856 212 SVSLWKEN------TDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 212 ~v~iw~~~------~~~~~~~~~~~~~~~~~ 236 (271)
++.++--. .+...-+++.+.+|...
T Consensus 673 tv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~ 703 (733)
T KOG0650|consen 673 TVIVFHGMVYNDLLQNPLIVPLKRLRGHEKT 703 (733)
T ss_pred cEEEEeeeeehhhhcCCceEeeeeccCceee
Confidence 99998542 22335677888888766
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.9e-12 Score=105.55 Aligned_cols=185 Identities=11% Similarity=0.072 Sum_probs=127.8
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
|...-..||..|+.|+..|.|..+|+ ...+...-. .-+.|.++.|-.+.+++|.+ +...+++||-. |....|++..
T Consensus 133 Y~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~-GtElHClk~~ 209 (545)
T KOG1272|consen 133 YHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN-GTELHCLKRH 209 (545)
T ss_pred eeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCC-CcEEeehhhc
Confidence 55555689999999999999999998 111111110 11227788888777777665 77788899873 2334444432
Q ss_pred ceeeEEEeecccee-e-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC
Q psy13856 106 YFKLTVYSTKLTRI-L-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY 177 (271)
Q Consensus 106 ~~~~~~~~~~~~~l-~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 177 (271)
.....+--..-.+| + +-++. ...+ +.+..+....+.+..++-+| -...+-.|...|+|.+|.....
T Consensus 210 ~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~G--klVa~~~t~~G~~~vm~qNP----~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 210 IRVARLEFLPYHFLLVAASEAGFLKYQDVSTG--KLVASIRTGAGRTDVMKQNP----YNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred CchhhhcccchhheeeecccCCceEEEeechh--hhhHHHHccCCccchhhcCC----ccceEEEcCCCceEEecCCCCc
Confidence 11111111111111 1 22222 2334 45556666677888899999 4789999999999999999887
Q ss_pred ceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 178 VTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 178 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
++ ...+..|.++|.++++.++|.|++|++.|..++|||++.-.
T Consensus 284 eP--LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ 326 (545)
T KOG1272|consen 284 EP--LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFY 326 (545)
T ss_pred ch--HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccc
Confidence 76 66777899999999999999999999999999999998653
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=96.42 Aligned_cols=124 Identities=9% Similarity=0.123 Sum_probs=93.5
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEE
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRD 146 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~ 146 (271)
..++.|++-|.+||.|..||.+-+||.. ++..-+.+.+|..+|.+
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~-----------------------------------T~~iar~lsaH~~pi~s 70 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFD-----------------------------------TFRIARMLSAHVRPITS 70 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcc-----------------------------------ccchhhhhhccccceeE
Confidence 3689999999999999999999999982 22455677899999999
Q ss_pred EEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeee---------ecc------------------------C-----
Q psy13856 147 VAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFI---------MNT------------------------F----- 188 (271)
Q Consensus 147 v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---------~~~------------------------h----- 188 (271)
++|++ ||+.|+++|.|..|.+||+..+.+..... ++. |
T Consensus 71 l~WS~----dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~ 146 (405)
T KOG1273|consen 71 LCWSR----DGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPK 146 (405)
T ss_pred EEecC----CCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccC
Confidence 99999 79999999999999999998865310000 000 0
Q ss_pred ------CCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 189 ------DDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 189 ------~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
...-.+..|.+.|+++++|..-|.+.++|..+- +++..++.
T Consensus 147 d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~---e~vas~ri 193 (405)
T KOG1273|consen 147 DDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL---ECVASFRI 193 (405)
T ss_pred CCccccccccccccccCCCCEEEEecCcceEEEEecchh---eeeeeeee
Confidence 001122346777899999999999999998765 55554443
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.7e-10 Score=95.49 Aligned_cols=150 Identities=23% Similarity=0.262 Sum_probs=117.8
Q ss_pred ccCCCCCCCEEEEccC-CCeEEeccc-----eeeeccccccccccceEEEEcCCCC-eEEEEeCCCcEEEEEeecCCCCc
Q psy13856 28 TESPLRIGHTLISCDT-QAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLN-RSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~-d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
.....+++..+++++. |+.+++|+. ...+.+|... +.+++|+|++. .+++++.|+.+++||. ..+
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~d~~i~~wd~---~~~- 231 (466)
T COG2319 160 SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP----VSSLAFSPDGGLLIASGSSDGTIRLWDL---STG- 231 (466)
T ss_pred EEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCc----eEEEEEcCCcceEEEEecCCCcEEEEEC---CCC-
Confidence 3445568888888886 999999998 5677788888 99999999998 6666699999999976 211
Q ss_pred eeeccceeeEEEeeccceeeeEEEEeeCCceEEeE-EecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce
Q psy13856 101 CLQPKYFKLTVYSTKLTRILILVRICGGDKWIEET-KLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT 179 (271)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~-~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 179 (271)
.... .+.+|.... -..|+| ++.++++++.|+.+++|+.+....
T Consensus 232 -------------------------------~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 232 -------------------------------KLLRSTLSGHSDSV-VSSFSP----DGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred -------------------------------cEEeeecCCCCcce-eEeECC----CCCEEEEecCCCcEEEeeecCCCc
Confidence 2223 566777665 338999 468888999999999999987664
Q ss_pred eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 180 WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 180 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
. ...+.+|...+.++.|+|++..+++++.|+.+.+|+.....
T Consensus 276 ~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 317 (466)
T COG2319 276 L-LRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGK 317 (466)
T ss_pred E-EEEEecCCccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCc
Confidence 1 23336788999999999988888889889999999887653
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.8e-12 Score=105.33 Aligned_cols=143 Identities=15% Similarity=0.126 Sum_probs=116.3
Q ss_pred CCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
+.|...+|+.++. ..||+||+ .+.+.....+ |..++.+|.|..|+.|+.|+.+..+|+.
T Consensus 574 FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kw----iS~msihp~GDnli~gs~d~k~~WfDld----------- 637 (733)
T KOG0650|consen 574 FHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKW----ISSMSIHPNGDNLILGSYDKKMCWFDLD----------- 637 (733)
T ss_pred ecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCee----eeeeeecCCCCeEEEecCCCeeEEEEcc-----------
Confidence 3456677888877 99999999 5556666777 8999999999999999999999555651
Q ss_pred ceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcC-------CCc
Q psy13856 106 YFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSN-------DYV 178 (271)
Q Consensus 106 ~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~-------~~~ 178 (271)
... ++.+.+.-|...+++|+|++ ...+|++|+.||++.|+.-. ++.
T Consensus 638 ---------------------lss--kPyk~lr~H~~avr~Va~H~----ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpl 690 (733)
T KOG0650|consen 638 ---------------------LSS--KPYKTLRLHEKAVRSVAFHK----RYPLFASGSDDGTVIVFHGMVYNDLLQNPL 690 (733)
T ss_pred ---------------------cCc--chhHHhhhhhhhhhhhhhcc----ccceeeeecCCCcEEEEeeeeehhhhcCCc
Confidence 112 46667778999999999999 48899999999999998643 223
Q ss_pred eeeeeeeccCCCC----eEEEEEecCCCEEEEEECCCcEEEE
Q psy13856 179 TWTPFIMNTFDDV----VWNVSWSLTGDILTVSCGDNSVSLW 216 (271)
Q Consensus 179 ~~~~~~~~~h~~~----v~~v~~~~~g~~l~s~s~D~~v~iw 216 (271)
..++..+.+|... |..+.|+|...+|++++.||+|++|
T Consensus 691 iVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 691 IVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred eEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 3446778888654 8999999999999999999999998
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=5.9e-12 Score=104.80 Aligned_cols=158 Identities=15% Similarity=0.006 Sum_probs=118.3
Q ss_pred cCCCCCCCEEEEccCCCeEEeccc------eeeeccccccccccceEEEEcC--CCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 29 ESPLRIGHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSP--KLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 29 ~~~~~~g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
..+..||.+|++||.|-.+.|||. ...-.+|... |+++.|-| ..+.+++|+.|..|+++|+...+.+.
T Consensus 56 LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaN----IFsvKFvP~tnnriv~sgAgDk~i~lfdl~~~~~~~ 131 (758)
T KOG1310|consen 56 LEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTAN----IFSVKFVPYTNNRIVLSGAGDKLIKLFDLDSSKEGG 131 (758)
T ss_pred eeecCCCCEEeecCCcceEEeecchhcceeeeeecccccc----eeEEeeeccCCCeEEEeccCcceEEEEecccccccc
Confidence 334579999999999999999999 2333689999 99999998 44589999999999999984211111
Q ss_pred eeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCcee
Q psy13856 101 CLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTW 180 (271)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 180 (271)
. +.+..+..+.+..|...|-.++-.|+ ....+-+++.||+++-+|++.....
T Consensus 132 ~-------------------------d~~~~~~~~~~~cht~rVKria~~p~---~PhtfwsasEDGtirQyDiREph~c 183 (758)
T KOG1310|consen 132 M-------------------------DHGMEETTRCWSCHTDRVKRIATAPN---GPHTFWSASEDGTIRQYDIREPHVC 183 (758)
T ss_pred c-------------------------ccCccchhhhhhhhhhhhhheecCCC---CCceEEEecCCcceeeecccCCccC
Confidence 0 11222445556679999999999996 5689999999999999999874310
Q ss_pred eeee---------eccCCCCeEEEEEecC-CCEEEEEECCCcEEEEEeC
Q psy13856 181 TPFI---------MNTFDDVVWNVSWSLT-GDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 181 ~~~~---------~~~h~~~v~~v~~~~~-g~~l~s~s~D~~v~iw~~~ 219 (271)
... +...--...|+..+|. ..+|+.|+.|--.++||.+
T Consensus 184 -~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 184 -NPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred -CccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 111 1111235688999985 6789999999999999954
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=4.9e-11 Score=106.21 Aligned_cols=180 Identities=9% Similarity=0.014 Sum_probs=119.7
Q ss_pred CCCEEEEccCCCeEEeccc----------ee---eeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 34 IGHTLISCDTQAHIGIRST----------IS---LLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~----------~~---~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
|..++++|+.||.||||+- +. .+.++....+..-.-++|.....+|+++|.-..|++||. +...
T Consensus 1122 D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa---~~E~ 1198 (1387)
T KOG1517|consen 1122 DDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDA---HKEQ 1198 (1387)
T ss_pred chhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEec---ccce
Confidence 5668999999999999986 11 111121110000223567765567777777899999998 6666
Q ss_pred eeeccce--eeEEEeec-----cceee-----eEEEE-ee--CCceEEeEEecCCCcc--eEEEEEccCCCCCCcEEEEE
Q psy13856 101 CLQPKYF--KLTVYSTK-----LTRIL-----ILVRI-CG--GDKWIEETKLENHSDW--VRDVAWAPSWGLSKCMIASC 163 (271)
Q Consensus 101 ~~~~~~~--~~~~~~~~-----~~~l~-----~~v~i-~~--~~~~~~~~~~~~h~~~--v~~v~~~p~~~~~~~~l~s~ 163 (271)
+....-+ ...+.+.. +..++ |.+++ +. ...-..+...+.|.+. |..+.+.++ .-..|++|
T Consensus 1199 ~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~---G~~elvSg 1275 (1387)
T KOG1517|consen 1199 VVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ---GLGELVSG 1275 (1387)
T ss_pred eEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC---CCcceeee
Confidence 6554422 22222222 45554 88888 11 1111356677888877 999999985 23369999
Q ss_pred eCCCeEEEEEcCCCceeeeeeeccC---CCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 164 SQDRKVIIWTSNDYVTWTPFIMNTF---DDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 164 ~~dg~i~iwd~~~~~~~~~~~~~~h---~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
+.||.|++||++............| .+.++++..+++..++|+|+. +.|+||++..
T Consensus 1276 s~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G 1334 (1387)
T KOG1517|consen 1276 SQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG 1334 (1387)
T ss_pred ccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh
Confidence 9999999999998532112233333 336899999999999999998 9999999874
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.2e-13 Score=115.30 Aligned_cols=118 Identities=19% Similarity=0.201 Sum_probs=105.5
Q ss_pred eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceE
Q psy13856 53 ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWI 132 (271)
Q Consensus 53 ~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~ 132 (271)
+..+.+|... |+|+.|...|.++++|+.|..+++|.. .+. .
T Consensus 183 ikrLlgH~na----Vyca~fDrtg~~Iitgsdd~lvKiwS~---------------------------------et~--~ 223 (1113)
T KOG0644|consen 183 IKRLLGHRNA----VYCAIFDRTGRYIITGSDDRLVKIWSM---------------------------------ETA--R 223 (1113)
T ss_pred HHHHHhhhhh----eeeeeeccccceEeecCccceeeeeec---------------------------------cch--h
Confidence 5567789999 999999999999999999999999996 233 5
Q ss_pred EeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCc
Q psy13856 133 EETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNS 212 (271)
Q Consensus 133 ~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~ 212 (271)
+.....||++.|+.++.+.+ ..++++++.|..|++|.+..+.+ +..+.+|+++|++++|+|-. +.+.||+
T Consensus 224 ~lAs~rGhs~ditdlavs~~----n~~iaaaS~D~vIrvWrl~~~~p--vsvLrghtgavtaiafsP~~----sss~dgt 293 (1113)
T KOG0644|consen 224 CLASCRGHSGDITDLAVSSN----NTMIAAASNDKVIRVWRLPDGAP--VSVLRGHTGAVTAIAFSPRA----SSSDDGT 293 (1113)
T ss_pred hhccCCCCccccchhccchh----hhhhhhcccCceEEEEecCCCch--HHHHhccccceeeeccCccc----cCCCCCc
Confidence 67778899999999999884 78999999999999999999887 88899999999999999965 6778999
Q ss_pred EEEEEeC
Q psy13856 213 VSLWKEN 219 (271)
Q Consensus 213 v~iw~~~ 219 (271)
+++||.+
T Consensus 294 ~~~wd~r 300 (1113)
T KOG0644|consen 294 CRIWDAR 300 (1113)
T ss_pred eEecccc
Confidence 9999987
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=7e-11 Score=96.31 Aligned_cols=125 Identities=16% Similarity=0.127 Sum_probs=89.0
Q ss_pred ccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeE
Q psy13856 57 QGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEET 135 (271)
Q Consensus 57 ~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~ 135 (271)
.-|... |.+++++| ...+|+|+|.|++.++||++.-... . .+.-
T Consensus 319 ~lh~kK----I~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K-----------------------------~--sp~l 363 (498)
T KOG4328|consen 319 RLHKKK----ITSVALNPVCPWFLATASLDQTAKIWDLRQLRGK-----------------------------A--SPFL 363 (498)
T ss_pred hhhhcc----cceeecCCCCchheeecccCcceeeeehhhhcCC-----------------------------C--Ccce
Confidence 345555 88999999 5568999999999999998411100 0 1123
Q ss_pred EecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcC----CCceeeeeeeccCC--C--CeEEEEEecCCCEEEEE
Q psy13856 136 KLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSN----DYVTWTPFIMNTFD--D--VVWNVSWSLTGDILTVS 207 (271)
Q Consensus 136 ~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~----~~~~~~~~~~~~h~--~--~v~~v~~~~~g~~l~s~ 207 (271)
....|...|.+..|+|. ++. |++.+.|..|+|||.. ..++. ..+.+.+. . ......|.|+..++++|
T Consensus 364 st~~HrrsV~sAyFSPs---~gt-l~TT~~D~~IRv~dss~~sa~~~p~-~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg 438 (498)
T KOG4328|consen 364 STLPHRRSVNSAYFSPS---GGT-LLTTCQDNEIRVFDSSCISAKDEPL-GTIPHNNRTGRWLTPFKAAWDPDYNLIVVG 438 (498)
T ss_pred ecccccceeeeeEEcCC---CCc-eEeeccCCceEEeecccccccCCcc-ceeeccCcccccccchhheeCCCccEEEEe
Confidence 33459999999999996 455 9999999999999984 22211 22222222 1 23467899999999999
Q ss_pred ECCCcEEEEEeCCC
Q psy13856 208 CGDNSVSLWKENTD 221 (271)
Q Consensus 208 s~D~~v~iw~~~~~ 221 (271)
..-..|-|+|.+.+
T Consensus 439 ~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 439 RYPRPIDVFDGNGG 452 (498)
T ss_pred ccCcceeEEcCCCC
Confidence 99889999997755
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=7.7e-11 Score=101.89 Aligned_cols=183 Identities=19% Similarity=0.209 Sum_probs=122.3
Q ss_pred CCEEEEccCCCeEEeccc--------eeee--c---cccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 35 GHTLISCDTQAHIGIRST--------ISLL--Q---GSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 35 g~~l~s~s~d~~i~lwd~--------~~~~--~---~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
+.-++++|.||.|..|++ ...+ . +........+++++|.+ +.+.++.|+.+|.|.--.........
T Consensus 305 ~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~ 384 (555)
T KOG1587|consen 305 NTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAP 384 (555)
T ss_pred CCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccc
Confidence 366999999999999998 0111 1 11122333467899987 67789999999999553321111111
Q ss_pred --e---eecc-ceeeEEEeec----c-ceee----eEEEEeeCC-ceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe
Q psy13856 101 --C---LQPK-YFKLTVYSTK----L-TRIL----ILVRICGGD-KWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 164 (271)
Q Consensus 101 --~---~~~~-~~~~~~~~~~----~-~~l~----~~v~i~~~~-~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~ 164 (271)
+ .... .+...+.+.. . +.|. ..++|+... ...++..+..+.+.|++++|||. ....|+++.
T Consensus 385 ~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSpt---rpavF~~~d 461 (555)
T KOG1587|consen 385 EVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPT---RPAVFATVD 461 (555)
T ss_pred cccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCc---CceEEEEEc
Confidence 0 1011 1222222222 2 2222 667772222 22566777778888999999997 678999999
Q ss_pred CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 165 QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
.||.+.+||+.....-+......+....+.+.|+++|++|++|...|++++|++..
T Consensus 462 ~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 462 GDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred CCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 99999999998654332444444466778889999999999999999999999963
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.1e-11 Score=97.54 Aligned_cols=151 Identities=14% Similarity=0.101 Sum_probs=81.4
Q ss_pred cccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCc-eeeccceeeEEEeec--cceeeeEEEE--eeCCce
Q psy13856 58 GSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPA-CLQPKYFKLTVYSTK--LTRILILVRI--CGGDKW 131 (271)
Q Consensus 58 ~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~-~~~~~~~~~~~~~~~--~~~l~~~v~i--~~~~~~ 131 (271)
.|.+. |+++.|+| +.++|+|||.||-+.+||+....... .+.+..+...+.... ++.. ..|.. ....
T Consensus 163 SH~DD----VT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~y-krI~clTH~Et-- 235 (376)
T KOG1188|consen 163 SHNDD----VTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKY-KRIMCLTHMET-- 235 (376)
T ss_pred hccCc----ceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCc-ceEEEEEccCc--
Confidence 46666 99999999 77899999999999999984221111 111111111111100 0000 01111 1111
Q ss_pred EEeEEecCCCcceEE--------------------E-EEccCCCCCCcEEEEEeC-CCeEEEEEcCC---Cce-eeeeee
Q psy13856 132 IEETKLENHSDWVRD--------------------V-AWAPSWGLSKCMIASCSQ-DRKVIIWTSND---YVT-WTPFIM 185 (271)
Q Consensus 132 ~~~~~~~~h~~~v~~--------------------v-~~~p~~~~~~~~l~s~~~-dg~i~iwd~~~---~~~-~~~~~~ 185 (271)
-....++ +.+.+.. | ..+|. +...++.++. -+...++-+.. +.. .....+
T Consensus 236 f~~~ele-~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~---~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l 311 (376)
T KOG1188|consen 236 FAIYELE-DGSEETWLENPDVSADDLRKEDNCDYVINEHSPG---DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAIL 311 (376)
T ss_pred eeEEEcc-CCChhhcccCccchhhhHHhhhhhhheeecccCC---CcceEEEeccccCceeEEEeeecccccccCccccc
Confidence 1222222 1111110 1 02343 5556655554 45555554432 211 013445
Q ss_pred cc-CCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 186 NT-FDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 186 ~~-h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
++ |..-|+++.|...+.++.+|+.||.+.+|...
T Consensus 312 ~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 312 QGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 55 66778999999999999999999999999953
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=4e-10 Score=95.26 Aligned_cols=146 Identities=22% Similarity=0.291 Sum_probs=116.3
Q ss_pred CCCCC-EEEEccC-CCeEEeccc------eeeeccccccccccceEEEEcCCCCeEEEEeC-CCcEEEEEeecCCCCcee
Q psy13856 32 LRIGH-TLISCDT-QAHIGIRST------ISLLQGSVYLRRESNKAGALSPKLNRSATSSF-HEAAKHLGTVQSSSPACL 102 (271)
Q Consensus 32 ~~~g~-~l~s~s~-d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~~~d~~~~~~~~~~ 102 (271)
.+++. .++..+. |+.+.+|+. ...+..|... |..++|+|++..+++++. |+.+++|+.. .
T Consensus 119 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---- 187 (466)
T COG2319 119 SPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSES----VTSLAFSPDGKLLASGSSLDGTIKLWDLR---T---- 187 (466)
T ss_pred CCCcceEEeccCCCCccEEEEEecCCCeEEEEEecCccc----EEEEEECCCCCEEEecCCCCCceEEEEcC---C----
Confidence 55666 5555444 999999997 4677888888 999999999998888885 9999999982 1
Q ss_pred eccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCc-EEEEEeCCCeEEEEEcCCCceee
Q psy13856 103 QPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC-MIASCSQDRKVIIWTSNDYVTWT 181 (271)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~ 181 (271)
. .....+.+|...|.+++|+| ++. ++++++.|+.+++||...+..
T Consensus 188 --------------------------~--~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~d~~i~~wd~~~~~~-- 233 (466)
T COG2319 188 --------------------------G--KPLSTLAGHTDPVSSLAFSP----DGGLLIASGSSDGTIRLWDLSTGKL-- 233 (466)
T ss_pred --------------------------C--ceEEeeccCCCceEEEEEcC----CcceEEEEecCCCcEEEEECCCCcE--
Confidence 1 45556667999999999998 465 666669999999999886554
Q ss_pred ee-eeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCc
Q psy13856 182 PF-IMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGA 223 (271)
Q Consensus 182 ~~-~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~ 223 (271)
.. .+..|.... -..|+|++.++++++.|+.+++|+......
T Consensus 234 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 234 LRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred EeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 44 577787765 338999998999999999999999986643
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.2e-11 Score=107.06 Aligned_cols=141 Identities=16% Similarity=0.103 Sum_probs=117.7
Q ss_pred CCCEEEEccCCCeEEeccc----ee-eeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecccee
Q psy13856 34 IGHTLISCDTQAHIGIRST----IS-LLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFK 108 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~----~~-~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~ 108 (271)
+.-++++|+.-+.|.+|+. .. .+.+|.+. |.++.|+-||+++++.|.|.++|+|++. +.+
T Consensus 144 ~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~----iF~i~~s~dg~~i~s~SdDRsiRlW~i~---s~~-------- 208 (967)
T KOG0974|consen 144 EELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGS----IFSIVTSLDGRYIASVSDDRSIRLWPID---SRE-------- 208 (967)
T ss_pred cEEEEEeccccccEEEEeccccCCcceecccCCc----eEEEEEccCCcEEEEEecCcceeeeecc---ccc--------
Confidence 4457999999999999998 22 47899999 9999999999999999999999999982 221
Q ss_pred eEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccC
Q psy13856 109 LTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTF 188 (271)
Q Consensus 109 ~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h 188 (271)
.......+|...|+.+.+.| ..+++++.|-++++|+..... ...+.+|
T Consensus 209 -----------------------~~~~~~fgHsaRvw~~~~~~------n~i~t~gedctcrvW~~~~~~---l~~y~~h 256 (967)
T KOG0974|consen 209 -----------------------VLGCTGFGHSARVWACCFLP------NRIITVGEDCTCRVWGVNGTQ---LEVYDEH 256 (967)
T ss_pred -----------------------ccCcccccccceeEEEEecc------ceeEEeccceEEEEEecccce---ehhhhhh
Confidence 11234568999999999999 299999999999999765433 4467777
Q ss_pred C-CCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 189 D-DVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 189 ~-~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
. ..+++++..++....++++.|+.+++|++...
T Consensus 257 ~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 257 SGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred hhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 5 47899999999999999999999999999754
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=93.49 Aligned_cols=145 Identities=7% Similarity=0.005 Sum_probs=113.0
Q ss_pred CCCCEEEEccCCCeEEeccc-----------eeee-ccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----------ISLL-QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----------~~~~-~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
.++++|++|+.|..+++|++ +... ..|... |++++|....+++.+|..+++|.+.|+ ++.+
T Consensus 66 ~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SN----IF~L~F~~~N~~~~SG~~~~~VI~HDi---Et~q 138 (609)
T KOG4227|consen 66 HNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSN----IFSLEFDLENRFLYSGERWGTVIKHDI---ETKQ 138 (609)
T ss_pred cCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccc----eEEEEEccCCeeEecCCCcceeEeeec---ccce
Confidence 47899999999999999998 2222 234456 999999999999999999999988887 3222
Q ss_pred eeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEec--CCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc
Q psy13856 101 CLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLE--NHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV 178 (271)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 178 (271)
.+..+. ...+.|+.+..+|. .+.|++.+.++.|.+||.+...
T Consensus 139 --------------------------------si~V~~~~~~~~~VY~m~~~P~----DN~~~~~t~~~~V~~~D~Rd~~ 182 (609)
T KOG4227|consen 139 --------------------------------SIYVANENNNRGDVYHMDQHPT----DNTLIVVTRAKLVSFIDNRDRQ 182 (609)
T ss_pred --------------------------------eeeeecccCcccceeecccCCC----CceEEEEecCceEEEEeccCCC
Confidence 222221 23458999999994 7899999999999999998755
Q ss_pred -eeeeeeeccCCCCeEEEEEecC-CCEEEEEECCCcEEEEEeCC
Q psy13856 179 -TWTPFIMNTFDDVVWNVSWSLT-GDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 179 -~~~~~~~~~h~~~v~~v~~~~~-g~~l~s~s~D~~v~iw~~~~ 220 (271)
..............+.+.|+|. ..+|++++..+-+.+||.+.
T Consensus 183 ~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~ 226 (609)
T KOG4227|consen 183 NPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRM 226 (609)
T ss_pred CCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeecc
Confidence 3334445556678899999996 67888999889999999874
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.8e-10 Score=100.49 Aligned_cols=180 Identities=9% Similarity=0.034 Sum_probs=112.4
Q ss_pred CCCCEEEEccCCCeEEeccce------------eeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 33 RIGHTLISCDTQAHIGIRSTI------------SLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~~------------~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
+++.+++|||.||+|++|+.. .++...... +..+...+.+..+|.++.||.|++.++...+..+
T Consensus 1059 ~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr----~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~ 1134 (1431)
T KOG1240|consen 1059 EHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSR----VEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSK 1134 (1431)
T ss_pred CCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCc----eEEEEeccCCCeEEEEcCCCeEEEEEcccccccc
Confidence 466899999999999999981 112222334 6678888889999999999999998874211111
Q ss_pred ee----ecc---ceeeEE----Eeec-cc-eee-----eEEEEeeCCceEEeEEe--cCCCcceEEEEEccCCCCCCcEE
Q psy13856 101 CL----QPK---YFKLTV----YSTK-LT-RIL-----ILVRICGGDKWIEETKL--ENHSDWVRDVAWAPSWGLSKCMI 160 (271)
Q Consensus 101 ~~----~~~---~~~~~~----~~~~-~~-~l~-----~~v~i~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~~~~~l 160 (271)
.. +.. ..+..+ +... .. .++ +.+..++.+.......+ ....+.|++++.+| .++++
T Consensus 1135 ~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp----~~~Wl 1210 (1431)
T KOG1240|consen 1135 RVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP----WCNWL 1210 (1431)
T ss_pred ceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC----CceEE
Confidence 11 110 111111 1111 11 222 22222222211111111 22358899999999 58999
Q ss_pred EEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCC---CEEEEEE--CCCcEEEEEeCCC
Q psy13856 161 ASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTG---DILTVSC--GDNSVSLWKENTD 221 (271)
Q Consensus 161 ~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g---~~l~s~s--~D~~v~iw~~~~~ 221 (271)
+.|...|.+.+||++=.... .....++..++..+..+|-. ...++++ ..+.|.+|++.++
T Consensus 1211 viGts~G~l~lWDLRF~~~i-~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1211 VIGTSRGQLVLWDLRFRVPI-LSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred EEecCCceEEEEEeecCcee-ecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 99999999999999976643 33344556788888888742 4444444 4788999999877
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.27 E-value=7.7e-10 Score=95.08 Aligned_cols=189 Identities=13% Similarity=0.016 Sum_probs=115.3
Q ss_pred ecccCCCCCCCEEEEccCC---CeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEe-CCCcEEEEEeecCC
Q psy13856 26 TYTESPLRIGHTLISCDTQ---AHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSS-FHEAAKHLGTVQSS 97 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d---~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~~~d~~~~~ 97 (271)
.......|||+.|+..+.+ ..|.+||+ ...+....+. ....+|+|||+.|+.++ .++.+.+|...- .
T Consensus 206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~----~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~-~ 280 (429)
T PRK01742 206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH----NGAPAFSPDGSRLAFASSKDGVLNIYVMGA-N 280 (429)
T ss_pred cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc----cCceeECCCCCEEEEEEecCCcEEEEEEEC-C
Confidence 3445556899999887654 47999998 2233333333 45789999999888764 688776664310 3
Q ss_pred CCceeecc----ceeeEEEeeccceee------eEEEE---eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe
Q psy13856 98 SPACLQPK----YFKLTVYSTKLTRIL------ILVRI---CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 164 (271)
Q Consensus 98 ~~~~~~~~----~~~~~~~~~~~~~l~------~~v~i---~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~ 164 (271)
.+...+.. ......++++++.++ +...| ...+ .....+ ++.. ....|+| |+.+|+..+
T Consensus 281 ~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~--~~~~~l-~~~~--~~~~~Sp----DG~~ia~~~ 351 (429)
T PRK01742 281 GGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASG--GGASLV-GGRG--YSAQISA----DGKTLVMIN 351 (429)
T ss_pred CCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCC--CCeEEe-cCCC--CCccCCC----CCCEEEEEc
Confidence 33333222 124466777777655 23333 2222 111222 3333 4578999 789998888
Q ss_pred CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC-CCceeEEEEecccch
Q psy13856 165 QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT-DGAWQCITEMGKTSE 235 (271)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~-~~~~~~~~~~~~~~~ 235 (271)
.++ +.+||+.++.. ......+ ....+.|+|+|++|+.++.++...+|++.. .+ ....++..+.+
T Consensus 352 ~~~-i~~~Dl~~g~~--~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G--~~~~~l~~~~g 416 (429)
T PRK01742 352 GDN-VVKQDLTSGST--EVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADG--RFKARLPGSDG 416 (429)
T ss_pred CCC-EEEEECCCCCe--EEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCC--CceEEccCCCC
Confidence 766 55599988763 2222222 235678999999999999999888887632 12 45566655443
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=4.6e-10 Score=97.76 Aligned_cols=143 Identities=13% Similarity=0.135 Sum_probs=120.0
Q ss_pred CEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeE
Q psy13856 36 HTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLT 110 (271)
Q Consensus 36 ~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~ 110 (271)
+.++.|+.+|.+.+|++ +.+++++... |+++.=+|-=..++.|..+|+|.++++
T Consensus 173 NKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~----IT~ieqsPaLDVVaiG~~~G~ViifNl----------------- 231 (910)
T KOG1539|consen 173 NKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSR----ITAIEQSPALDVVAIGLENGTVIIFNL----------------- 231 (910)
T ss_pred eeEEEeecCCcEEEEEeccCcEEEEecccccc----eeEeccCCcceEEEEeccCceEEEEEc-----------------
Confidence 45889999999999999 7888899888 999999998889999999999999998
Q ss_pred EEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCC
Q psy13856 111 VYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDD 190 (271)
Q Consensus 111 ~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~ 190 (271)
..+ +.+.+++...+.|++++|... ....+++|+..|.+-+||++..+.. ......|.+
T Consensus 232 ----------------K~d--kil~sFk~d~g~VtslSFrtD---G~p~las~~~~G~m~~wDLe~kkl~-~v~~nah~~ 289 (910)
T KOG1539|consen 232 ----------------KFD--KILMSFKQDWGRVTSLSFRTD---GNPLLASGRSNGDMAFWDLEKKKLI-NVTRNAHYG 289 (910)
T ss_pred ----------------ccC--cEEEEEEccccceeEEEeccC---CCeeEEeccCCceEEEEEcCCCeee-eeeeccccC
Confidence 223 566777744699999999984 3446677888899999999987642 344568989
Q ss_pred CeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 191 VVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 191 ~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.|....|-|....+++++.|+.+++|-++++
T Consensus 290 sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~ 320 (910)
T KOG1539|consen 290 SVTGATFLPGEPVLVTAGADNSLKVWVFDSG 320 (910)
T ss_pred CcccceecCCCceEeeccCCCceeEEEeeCC
Confidence 9999999999999999999999999977743
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.8e-10 Score=90.09 Aligned_cols=131 Identities=23% Similarity=0.434 Sum_probs=110.9
Q ss_pred ccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcce
Q psy13856 65 ESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWV 144 (271)
Q Consensus 65 ~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v 144 (271)
..|++-+|++|.+.+|.+-....+.+|... ....|+..+++..|...|
T Consensus 11 ~pitchAwn~drt~iAv~~~~~evhiy~~~--------------------------------~~~~w~~~htls~Hd~~v 58 (361)
T KOG1523|consen 11 EPITCHAWNSDRTQIAVSPNNHEVHIYSML--------------------------------GADLWEPAHTLSEHDKIV 58 (361)
T ss_pred CceeeeeecCCCceEEeccCCceEEEEEec--------------------------------CCCCceeceehhhhCcce
Confidence 349999999999999999999899888862 223378999999999999
Q ss_pred EEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceee-eeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCc
Q psy13856 145 RDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWT-PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGA 223 (271)
Q Consensus 145 ~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~ 223 (271)
+.|.|+|. .+.|++|+.|+.-++|....+..|. ...+..+..+.++|.|+|.++.+|+||.-..|.+|-++....
T Consensus 59 tgvdWap~----snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENd 134 (361)
T KOG1523|consen 59 TGVDWAPK----SNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQEND 134 (361)
T ss_pred eEEeecCC----CCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccc
Confidence 99999994 8899999999999999996665542 335678999999999999999999999999999999988878
Q ss_pred eeEEEEec
Q psy13856 224 WQCITEMG 231 (271)
Q Consensus 224 ~~~~~~~~ 231 (271)
|-..+.++
T Consensus 135 WWVsKhik 142 (361)
T KOG1523|consen 135 WWVSKHIK 142 (361)
T ss_pred eehhhhhC
Confidence 84444443
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.5e-10 Score=90.64 Aligned_cols=149 Identities=9% Similarity=-0.028 Sum_probs=118.2
Q ss_pred CCCEEEEccCC--CeEEeccc---eeeeccccc-----ccccc--ceEEEEcCC--CCeEEEEeCCCcEEEEEeecCCCC
Q psy13856 34 IGHTLISCDTQ--AHIGIRST---ISLLQGSVY-----LRRES--NKAGALSPK--LNRSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 34 ~g~~l~s~s~d--~~i~lwd~---~~~~~~h~~-----~~~~~--i~~~~~s~~--~~~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
+-.++++|+.. ..+++||+ .+.+.+..- ..+.. ++++.|-+. ...|++++.-+.+|+||..
T Consensus 160 ~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~----- 234 (412)
T KOG3881|consen 160 DPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTR----- 234 (412)
T ss_pred CCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCc-----
Confidence 34567789998 89999999 333332211 01111 457889886 7899999999999999983
Q ss_pred ceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce
Q psy13856 100 ACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT 179 (271)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 179 (271)
.++ +++..+.--+.+++++...| +++++++|..-+.+..||.+.+..
T Consensus 235 ---------------------------~qR--RPV~~fd~~E~~is~~~l~p----~gn~Iy~gn~~g~l~~FD~r~~kl 281 (412)
T KOG3881|consen 235 ---------------------------HQR--RPVAQFDFLENPISSTGLTP----SGNFIYTGNTKGQLAKFDLRGGKL 281 (412)
T ss_pred ---------------------------ccC--cceeEeccccCcceeeeecC----CCcEEEEecccchhheecccCcee
Confidence 122 56666665678999999999 699999999999999999999875
Q ss_pred eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 180 WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 180 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
. ...+.+..+.+.++..+|.+.++|+++-|..|+|+|+.+.
T Consensus 282 ~-g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktr 322 (412)
T KOG3881|consen 282 L-GCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTR 322 (412)
T ss_pred e-ccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccc
Confidence 2 3347888999999999999999999999999999999874
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-09 Score=93.94 Aligned_cols=185 Identities=16% Similarity=0.147 Sum_probs=125.7
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCC---CeEEEEeCCCcEEEEEeecCC
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKL---NRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~---~~l~s~s~d~~i~~~d~~~~~ 97 (271)
.......+|+..++.+.. ..|.+|.. +..+.+|... +..+.+.|.. .++.+++.||.|++||- .
T Consensus 19 ~~~avfSnD~k~l~~~~~-~~V~VyS~~Tg~~i~~l~~~~a~----l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~---~ 90 (792)
T KOG1963|consen 19 KSPAVFSNDAKFLFLCTG-NFVKVYSTATGECITSLEDHTAP----LTSVIVLPSSENANYLIVCSLDGTIRVWDW---S 90 (792)
T ss_pred ecccccccCCcEEEEeeC-CEEEEEecchHhhhhhcccccCc----cceeeecCCCccceEEEEEecCccEEEecC---C
Confidence 334444568887777776 89999998 7788999999 9999998754 36789999999999997 4
Q ss_pred CCceeecccee----e------------E---------EEe---ec----cceee-------------------------
Q psy13856 98 SPACLQPKYFK----L------------T---------VYS---TK----LTRIL------------------------- 120 (271)
Q Consensus 98 ~~~~~~~~~~~----~------------~---------~~~---~~----~~~l~------------------------- 120 (271)
.+..++++... . . ++. .+ +.++.
T Consensus 91 ~~~Llkt~~~~~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~ 170 (792)
T KOG1963|consen 91 DGELLKTFDNNLPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNN 170 (792)
T ss_pred CcEEEEEEecCCceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcC
Confidence 44444332100 0 0 000 00 11110
Q ss_pred -eEEEE-----------eeCCc-eEEe-EEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC--Cceeeeee
Q psy13856 121 -ILVRI-----------CGGDK-WIEE-TKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND--YVTWTPFI 184 (271)
Q Consensus 121 -~~v~i-----------~~~~~-~~~~-~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~--~~~~~~~~ 184 (271)
+.++. ..... .... ..-..|.-.+++.+++|+ ++++|+|..||+|.+|.-.. ........
T Consensus 171 ~ge~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn----~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~ 246 (792)
T KOG1963|consen 171 SGEFKGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPN----ERYLAAGDSDGRILVWRDFGSSDDSETCTL 246 (792)
T ss_pred CceEEEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccc----cceEEEeccCCcEEEEeccccccccccceE
Confidence 11111 00000 0000 000125556789999995 99999999999999997544 33334667
Q ss_pred eccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 185 MNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 185 ~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
++=|...|.+++|+++|.+|++|+..+.+.+|.+.+++
T Consensus 247 lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~ 284 (792)
T KOG1963|consen 247 LHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGK 284 (792)
T ss_pred EEecccccceeEEecCCceEeecccceEEEEEeecCCC
Confidence 88899999999999999999999999999999998764
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.5e-09 Score=97.14 Aligned_cols=183 Identities=14% Similarity=0.061 Sum_probs=117.2
Q ss_pred CCEEEEccCCCeEEeccc--eeeeccccc--cccccceEEEEcC--CCCeEEEEeCCCcEEEEEeecCC--CCceeecc-
Q psy13856 35 GHTLISCDTQAHIGIRST--ISLLQGSVY--LRRESNKAGALSP--KLNRSATSSFHEAAKHLGTVQSS--SPACLQPK- 105 (271)
Q Consensus 35 g~~l~s~s~d~~i~lwd~--~~~~~~h~~--~~~~~i~~~~~s~--~~~~l~s~s~d~~i~~~d~~~~~--~~~~~~~~- 105 (271)
...++++.....|++||. -..+.+... .....|+.+.+-. |..++++|+.||.||+|+..... ..+.+...
T Consensus 1076 ~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~ 1155 (1387)
T KOG1517|consen 1076 EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWS 1155 (1387)
T ss_pred CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeec
Confidence 346888887799999999 223322211 1122267777643 55689999999999999875332 11222111
Q ss_pred ce---------eeEE--Eee-ccceee----eEEEEeeCCceEEeEEe-cCCCcceEEEEEccCCCCCCcEEEEEeCCCe
Q psy13856 106 YF---------KLTV--YST-KLTRIL----ILVRICGGDKWIEETKL-ENHSDWVRDVAWAPSWGLSKCMIASCSQDRK 168 (271)
Q Consensus 106 ~~---------~~~~--~~~-~~~~l~----~~v~i~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~ 168 (271)
.. ...+ |.. .|.+++ ..|+|++..+-..++.+ .+-...|+++.-+-. .|+.|++|..||.
T Consensus 1156 ~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~---~gn~i~AGfaDGs 1232 (1387)
T KOG1517|consen 1156 SLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLV---HGNIIAAGFADGS 1232 (1387)
T ss_pred cccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeeccccc---CCceEEEeecCCc
Confidence 11 1111 111 144444 45555333322333333 334556777776643 5799999999999
Q ss_pred EEEEEcCCCcee-eeeeeccCCCC--eEEEEEecCCC-EEEEEECCCcEEEEEeCC
Q psy13856 169 VIIWTSNDYVTW-TPFIMNTFDDV--VWNVSWSLTGD-ILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 169 i~iwd~~~~~~~-~~~~~~~h~~~--v~~v~~~~~g~-~l~s~s~D~~v~iw~~~~ 220 (271)
|++||.+....- .+.....|... |..+.+.+.|- .|++|+.||.|++||++.
T Consensus 1233 vRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~ 1288 (1387)
T KOG1517|consen 1233 VRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRM 1288 (1387)
T ss_pred eEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEeccc
Confidence 999999976431 14566788776 99999998765 499999999999999986
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-08 Score=84.74 Aligned_cols=189 Identities=8% Similarity=0.106 Sum_probs=116.2
Q ss_pred CCCCCCEEEEcc-CCCeEEeccce------eeec--cccccccccceEEEEcCCCCeEEE-EeCCCcEEEEEeecCCCCc
Q psy13856 31 PLRIGHTLISCD-TQAHIGIRSTI------SLLQ--GSVYLRRESNKAGALSPKLNRSAT-SSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 31 ~~~~g~~l~s~s-~d~~i~lwd~~------~~~~--~h~~~~~~~i~~~~~s~~~~~l~s-~s~d~~i~~~d~~~~~~~~ 100 (271)
..|+|+++++++ .++.|.+|++. .... .+... +..++++|+++++++ ...++.|.+||+.. .+.
T Consensus 87 ~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~----~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~--~g~ 160 (330)
T PRK11028 87 TDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEG----CHSANIDPDNRTLWVPCLKEDRIRLFTLSD--DGH 160 (330)
T ss_pred ECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCc----ccEeEeCCCCCEEEEeeCCCCEEEEEEECC--CCc
Confidence 347898777765 47899999871 1111 11122 577899999998754 45679999999842 122
Q ss_pred ee-------ecc--ce-eeEEEeeccceee------eEEEE--ee--CCceEEeEEecCC------CcceEEEEEccCCC
Q psy13856 101 CL-------QPK--YF-KLTVYSTKLTRIL------ILVRI--CG--GDKWIEETKLENH------SDWVRDVAWAPSWG 154 (271)
Q Consensus 101 ~~-------~~~--~~-~~~~~~~~~~~l~------~~v~i--~~--~~~~~~~~~~~~h------~~~v~~v~~~p~~~ 154 (271)
+. ... .. ....++.+++++. +.+.+ .+ .+.++.+..+..+ ......+.++|
T Consensus 161 l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p--- 237 (330)
T PRK11028 161 LVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP--- 237 (330)
T ss_pred ccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC---
Confidence 21 110 11 2345666677664 66665 22 2344444444322 12334688999
Q ss_pred CCCcEEEEEe-CCCeEEEEEcCCCceeeeeeeccC---CCCeEEEEEecCCCEEEEEEC-CCcEEEEEeCC-CCceeEEE
Q psy13856 155 LSKCMIASCS-QDRKVIIWTSNDYVTWTPFIMNTF---DDVVWNVSWSLTGDILTVSCG-DNSVSLWKENT-DGAWQCIT 228 (271)
Q Consensus 155 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~h---~~~v~~v~~~~~g~~l~s~s~-D~~v~iw~~~~-~~~~~~~~ 228 (271)
++++++++. .++.|.+|++..... ...+.++ ......+.|+|+|++|+++.. +++|.+|+++. .+.+..+.
T Consensus 238 -dg~~lyv~~~~~~~I~v~~i~~~~~--~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~~~g~l~~~~ 314 (330)
T PRK11028 238 -DGRHLYACDRTASLISVFSVSEDGS--VLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDGETGLLTELG 314 (330)
T ss_pred -CCCEEEEecCCCCeEEEEEEeCCCC--eEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcCCCCcEEEcc
Confidence 688887775 478999999965431 1111111 124567899999999998775 89999999863 34455555
Q ss_pred Eec
Q psy13856 229 EMG 231 (271)
Q Consensus 229 ~~~ 231 (271)
++.
T Consensus 315 ~~~ 317 (330)
T PRK11028 315 RYA 317 (330)
T ss_pred ccc
Confidence 443
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.4e-09 Score=93.55 Aligned_cols=160 Identities=15% Similarity=0.086 Sum_probs=107.3
Q ss_pred CCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCC---CcEEEEEeecCCCCce--eecc-c-eeeEEE
Q psy13856 44 QAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH---EAAKHLGTVQSSSPAC--LQPK-Y-FKLTVY 112 (271)
Q Consensus 44 d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d---~~i~~~d~~~~~~~~~--~~~~-~-~~~~~~ 112 (271)
+..|.+||. ...+..|... +.+.+|+|||+.|+..+.+ ..|++||+ .+++. +... . .....+
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~----v~~p~wSPDG~~la~~s~~~~~~~i~i~dl---~tg~~~~l~~~~g~~~~~~w 255 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQP----LMSPAWSPDGSKLAYVSFENKKSQLVVHDL---RSGARKVVASFRGHNGAPAF 255 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCc----cccceEcCCCCEEEEEEecCCCcEEEEEeC---CCCceEEEecCCCccCceeE
Confidence 468999998 5556677777 8999999999999887754 36999998 44432 2222 1 234567
Q ss_pred eeccceee------eEEEE---eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe-CCCeEEEEEcCCCceeee
Q psy13856 113 STKLTRIL------ILVRI---CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS-QDRKVIIWTSNDYVTWTP 182 (271)
Q Consensus 113 ~~~~~~l~------~~v~i---~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~ 182 (271)
+++++.++ +...| ...+ .....+..+...+....|+| |+..|+..+ .++...+|++...... .
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~--~~~~~lt~~~~~~~~~~wSp----DG~~i~f~s~~~g~~~I~~~~~~~~~-~ 328 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANG--GTPSQLTSGAGNNTEPSWSP----DGQSILFTSDRSGSPQVYRMSASGGG-A 328 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCC--CCeEeeccCCCCcCCEEECC----CCCEEEEEECCCCCceEEEEECCCCC-e
Confidence 78888776 33333 2222 23345556667788999999 688766554 5788888887543221 2
Q ss_pred eeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 183 FIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 183 ~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
..+ .+.. .+..|+|+|+.|+..+.++ +.+||+.++
T Consensus 329 ~~l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g 363 (429)
T PRK01742 329 SLV-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTSG 363 (429)
T ss_pred EEe-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCCC
Confidence 222 3433 4678999999998888765 666898765
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.2e-10 Score=96.35 Aligned_cols=137 Identities=16% Similarity=0.149 Sum_probs=111.7
Q ss_pred CCCeEEeccc---------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEe
Q psy13856 43 TQAHIGIRST---------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYS 113 (271)
Q Consensus 43 ~d~~i~lwd~---------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 113 (271)
.+..+.+|.. ...-..|... +++.++||.++++++|..||+|.+|..... +
T Consensus 179 ~~~~~~~~~v~~~~~~~~~~~~~~~Htf~----~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~-~--------------- 238 (792)
T KOG1963|consen 179 HMCKIHIYFVPKHTKHTSSRDITVHHTFN----ITCVALSPNERYLAAGDSDGRILVWRDFGS-S--------------- 238 (792)
T ss_pred EeeeEEEEEecccceeeccchhhhhhccc----ceeEEeccccceEEEeccCCcEEEEecccc-c---------------
Confidence 3366777776 1112345555 789999999999999999999999986310 0
Q ss_pred eccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeE
Q psy13856 114 TKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVW 193 (271)
Q Consensus 114 ~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~ 193 (271)
... ...+.+..|.+.|.+++|++ +|.+|.||+.++.+.+|.+.+++ .+.+....++|.
T Consensus 239 -------------~~~--~t~t~lHWH~~~V~~L~fS~----~G~~LlSGG~E~VLv~Wq~~T~~---kqfLPRLgs~I~ 296 (792)
T KOG1963|consen 239 -------------DDS--ETCTLLHWHHDEVNSLSFSS----DGAYLLSGGREGVLVLWQLETGK---KQFLPRLGSPIL 296 (792)
T ss_pred -------------ccc--ccceEEEecccccceeEEec----CCceEeecccceEEEEEeecCCC---cccccccCCeeE
Confidence 111 34566788999999999999 79999999999999999999987 667788889999
Q ss_pred EEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 194 NVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 194 ~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.+.++||+.+.+....|+.|.+....+.
T Consensus 297 ~i~vS~ds~~~sl~~~DNqI~li~~~dl 324 (792)
T KOG1963|consen 297 HIVVSPDSDLYSLVLEDNQIHLIKASDL 324 (792)
T ss_pred EEEEcCCCCeEEEEecCceEEEEeccch
Confidence 9999999999999999999999987654
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.4e-10 Score=85.26 Aligned_cols=145 Identities=12% Similarity=0.126 Sum_probs=105.8
Q ss_pred CCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 33 RIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
+.+..++++..+|.+.+-+. .+.++.|... ++...|+. +++.+.+|+.|+.+..||++ ..+..+
T Consensus 131 ~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E----~Wta~f~~~~pnlvytGgDD~~l~~~D~R--~p~~~i-- 202 (339)
T KOG0280|consen 131 TSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFE----AWTAKFSDKEPNLVYTGGDDGSLSCWDIR--IPKTFI-- 202 (339)
T ss_pred ccCceEEEEcCCCcEEEEecceeeeeeccccccccee----eeeeecccCCCceEEecCCCceEEEEEec--CCccee--
Confidence 45666888888898884443 5578899998 99999985 66799999999999999983 111111
Q ss_pred cceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeee
Q psy13856 105 KYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFI 184 (271)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 184 (271)
-+.-+-|...|.+|.-+|. .+.+|++|++|-.|++||.++... .-.
T Consensus 203 -----------------------------~~n~kvH~~GV~SI~ss~~---~~~~I~TGsYDe~i~~~DtRnm~k--Pl~ 248 (339)
T KOG0280|consen 203 -----------------------------WHNSKVHTSGVVSIYSSPP---KPTYIATGSYDECIRVLDTRNMGK--PLF 248 (339)
T ss_pred -----------------------------eecceeeecceEEEecCCC---CCceEEEeccccceeeeehhcccC--ccc
Confidence 1112348889999999986 789999999999999999996442 111
Q ss_pred eccCCCCeEEEEEecC--CCEEEEEECCCcEEEEEeCC
Q psy13856 185 MNTFDDVVWNVSWSLT--GDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 185 ~~~h~~~v~~v~~~~~--g~~l~s~s~D~~v~iw~~~~ 220 (271)
-..-.+.|+++.++|. +..|+++-..| .+|-+.+.
T Consensus 249 ~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~ 285 (339)
T KOG0280|consen 249 KAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSD 285 (339)
T ss_pred cCccccceEEEEecchhhhHHHHHHHhcC-ceEEEecc
Confidence 1223478999999995 44566665555 66676654
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=3e-09 Score=82.50 Aligned_cols=151 Identities=9% Similarity=0.025 Sum_probs=108.8
Q ss_pred CCC-EEEEccCCCeEEeccc-----eeeeccccccccc--cceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc
Q psy13856 34 IGH-TLISCDTQAHIGIRST-----ISLLQGSVYLRRE--SNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 34 ~g~-~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~--~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
+|. .++-+..+|.|.++.. ...+++-...... ...++.|++.+..++++-.+|.+.+.+.
T Consensus 83 ~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~------------ 150 (339)
T KOG0280|consen 83 DGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYE------------ 150 (339)
T ss_pred CccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEec------------
Confidence 444 5667777788888876 2222222221111 1346788888888888888888864332
Q ss_pred ceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeee
Q psy13856 106 YFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIM 185 (271)
Q Consensus 106 ~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 185 (271)
.....+..+..+.|+-..+-..|+.. +.+++.+|+.|+.+..||.+.+..+.-...
T Consensus 151 ---------------------t~~~le~vq~wk~He~E~Wta~f~~~---~pnlvytGgDD~~l~~~D~R~p~~~i~~n~ 206 (339)
T KOG0280|consen 151 ---------------------TEMVLEKVQTWKVHEFEAWTAKFSDK---EPNLVYTGGDDGSLSCWDIRIPKTFIWHNS 206 (339)
T ss_pred ---------------------ceeeeeecccccccceeeeeeecccC---CCceEEecCCCceEEEEEecCCcceeeecc
Confidence 11222455677889999999999976 789999999999999999995554323335
Q ss_pred ccCCCCeEEEEEec-CCCEEEEEECCCcEEEEEeCC
Q psy13856 186 NTFDDVVWNVSWSL-TGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 186 ~~h~~~v~~v~~~~-~g~~l~s~s~D~~v~iw~~~~ 220 (271)
..|...|.++.-+| .+.++++|+.|..|++||.+.
T Consensus 207 kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRn 242 (339)
T KOG0280|consen 207 KVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRN 242 (339)
T ss_pred eeeecceEEEecCCCCCceEEEeccccceeeeehhc
Confidence 67888999998876 588999999999999999974
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.13 E-value=9.4e-10 Score=88.95 Aligned_cols=122 Identities=16% Similarity=0.156 Sum_probs=93.4
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEE
Q psy13856 68 KAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDV 147 (271)
Q Consensus 68 ~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v 147 (271)
..++|+.+|..+++++.||++|+|+.. ....+.....|.+.|.++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~P-----------------------------------s~~t~l~e~~~~~eV~DL 192 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWP-----------------------------------SMLTILEEIAHHAEVKDL 192 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecC-----------------------------------cchhhhhhHhhcCccccc
Confidence 468999999999999999999999962 113344445688999999
Q ss_pred EEccCCCCCCcEEEEEeCCCeEEEEEcCCCceee--------------------------ee-ee--------------c
Q psy13856 148 AWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWT--------------------------PF-IM--------------N 186 (271)
Q Consensus 148 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--------------------------~~-~~--------------~ 186 (271)
.|+| |+.+|++-+.| ..+||+.+++.++. +. .. .
T Consensus 193 ~FS~----dgk~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~ 267 (398)
T KOG0771|consen 193 DFSP----DGKFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWS 267 (398)
T ss_pred eeCC----CCcEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeec
Confidence 9999 79999999999 89999998761100 00 00 0
Q ss_pred c-----------CCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 187 T-----------FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 187 ~-----------h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
+ -...|.+++.+++|+++|.|+-||.|-|++..+- ++++-++.
T Consensus 268 ~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~l---q~~~~vk~ 321 (398)
T KOG0771|consen 268 GSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSL---QRLQYVKE 321 (398)
T ss_pred cccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEecee---eeeEeehh
Confidence 0 0237889999999999999999999999998765 55555543
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.6e-08 Score=85.92 Aligned_cols=177 Identities=11% Similarity=0.038 Sum_probs=109.3
Q ss_pred cccCCCCCCCEEEEccC---CCeEEeccc----eeeeccccccccccceEEEEcCCCCeEE-EEeCCCc--EEEEEeecC
Q psy13856 27 YTESPLRIGHTLISCDT---QAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSA-TSSFHEA--AKHLGTVQS 96 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~---d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~-s~s~d~~--i~~~d~~~~ 96 (271)
......|||+.|+..+. +..|.+||+ ...+..+.+. +...+|+|||+.|+ +.+.++. |+++|.
T Consensus 205 ~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~----~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~--- 277 (435)
T PRK05137 205 LTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGM----TFAPRFSPDGRKVVMSLSQGGNTDIYTMDL--- 277 (435)
T ss_pred EeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCc----ccCcEECCCCCEEEEEEecCCCceEEEEEC---
Confidence 33444679998887653 468999998 3445555666 77899999999765 5566665 556676
Q ss_pred CCCceeeccc----eeeEEEeeccceee--------eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEE
Q psy13856 97 SSPACLQPKY----FKLTVYSTKLTRIL--------ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASC 163 (271)
Q Consensus 97 ~~~~~~~~~~----~~~~~~~~~~~~l~--------~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~ 163 (271)
..+...+... .....++.+++.++ ..+.+ ...+ ...+.+..+...+....|+| |+++|+..
T Consensus 278 ~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g--~~~~~lt~~~~~~~~~~~Sp----dG~~ia~~ 351 (435)
T PRK05137 278 RSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADG--SNPRRISFGGGRYSTPVWSP----RGDLIAFT 351 (435)
T ss_pred CCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCC--CCeEEeecCCCcccCeEECC----CCCEEEEE
Confidence 4444433321 13356777787776 23444 2222 12233333345566788999 68888776
Q ss_pred eCC---CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC------CcEEEEEeCC
Q psy13856 164 SQD---RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD------NSVSLWKENT 220 (271)
Q Consensus 164 ~~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D------~~v~iw~~~~ 220 (271)
+.+ ..|.+||...+. ...+. ....+....|+|||+.|+..+.+ ..+++++++.
T Consensus 352 ~~~~~~~~i~~~d~~~~~---~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g 413 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSG---ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTG 413 (435)
T ss_pred EcCCCceEEEEEECCCCc---eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCC
Confidence 643 368888875544 22222 22246678999999988776553 2466666653
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.7e-08 Score=80.76 Aligned_cols=182 Identities=9% Similarity=0.066 Sum_probs=109.8
Q ss_pred EEEEccCCCeEEeccc--------eeeeccccccccccceEEEEcCCCCeEEEEe-CCCcEEEEEeecCCCCce--eecc
Q psy13856 37 TLISCDTQAHIGIRST--------ISLLQGSVYLRRESNKAGALSPKLNRSATSS-FHEAAKHLGTVQSSSPAC--LQPK 105 (271)
Q Consensus 37 ~l~s~s~d~~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~~~d~~~~~~~~~--~~~~ 105 (271)
.+++...|+.|++|++ ++.+. +.+. +..++++|++++|++++ .++.|..|+.. ..+.. ....
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~----~~~l~~spd~~~lyv~~~~~~~i~~~~~~--~~g~l~~~~~~ 76 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVD-VPGQ----VQPMVISPDKRHLYVGVRPEFRVLSYRIA--DDGALTFAAES 76 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEe-cCCC----CccEEECCCCCEEEEEECCCCcEEEEEEC--CCCceEEeeee
Confidence 3555577899999998 22222 2233 67899999999887664 57888889883 22222 2211
Q ss_pred ---ce-eeEEEeeccceee------eEEEE--e-eCCce-EEeEEecCCCcceEEEEEccCCCCCCcEE-EEEeCCCeEE
Q psy13856 106 ---YF-KLTVYSTKLTRIL------ILVRI--C-GGDKW-IEETKLENHSDWVRDVAWAPSWGLSKCMI-ASCSQDRKVI 170 (271)
Q Consensus 106 ---~~-~~~~~~~~~~~l~------~~v~i--~-~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~~l-~s~~~dg~i~ 170 (271)
.. ....++.+++++. +.+.+ . .++.. .....+. +......++++| +++++ ++...++.|.
T Consensus 77 ~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p----~g~~l~v~~~~~~~v~ 151 (330)
T PRK11028 77 PLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP----DNRTLWVPCLKEDRIR 151 (330)
T ss_pred cCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC----CCCEEEEeeCCCCEEE
Confidence 11 2233455566555 45555 2 12211 1222232 223456788999 57666 5555679999
Q ss_pred EEEcCCCceeee---eeec-cCCCCeEEEEEecCCCEEEEEEC-CCcEEEEEeCC-CCceeEEEEe
Q psy13856 171 IWTSNDYVTWTP---FIMN-TFDDVVWNVSWSLTGDILTVSCG-DNSVSLWKENT-DGAWQCITEM 230 (271)
Q Consensus 171 iwd~~~~~~~~~---~~~~-~h~~~v~~v~~~~~g~~l~s~s~-D~~v~iw~~~~-~~~~~~~~~~ 230 (271)
+||+.+...... .... ........+.|+|+|++++++.. +++|.+|+++. .+.++.+.++
T Consensus 152 v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~ 217 (330)
T PRK11028 152 LFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTL 217 (330)
T ss_pred EEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEE
Confidence 999976332100 0011 11234678999999999988876 89999999974 2345555544
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.3e-09 Score=95.58 Aligned_cols=145 Identities=15% Similarity=0.129 Sum_probs=110.6
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccce
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF 107 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~ 107 (271)
-....++.+..++.+.+||. ...+............-+-++++.-++++|+.-+.|.+|+..
T Consensus 97 ~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~------------- 163 (967)
T KOG0974|consen 97 EENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPH------------- 163 (967)
T ss_pred hhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecc-------------
Confidence 34566778888899999998 222222222211222334567777799999999999899872
Q ss_pred eeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeecc
Q psy13856 108 KLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187 (271)
Q Consensus 108 ~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 187 (271)
.+. .. ..+.+|++.+.++.|+. ||.++++.|.|+++++|++.+.+.. .....+
T Consensus 164 -------------------~dn--~p-~~l~GHeG~iF~i~~s~----dg~~i~s~SdDRsiRlW~i~s~~~~-~~~~fg 216 (967)
T KOG0974|consen 164 -------------------EDN--KP-IRLKGHEGSIFSIVTSL----DGRYIASVSDDRSIRLWPIDSREVL-GCTGFG 216 (967)
T ss_pred -------------------ccC--Cc-ceecccCCceEEEEEcc----CCcEEEEEecCcceeeeeccccccc-Cccccc
Confidence 011 11 15779999999999998 7999999999999999999998753 236678
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 188 h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
|+..|+.++|.|+ .+++++.|-+.++|+.+
T Consensus 217 HsaRvw~~~~~~n--~i~t~gedctcrvW~~~ 246 (967)
T KOG0974|consen 217 HSARVWACCFLPN--RIITVGEDCTCRVWGVN 246 (967)
T ss_pred ccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence 9999999999998 89999999999999654
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=4.5e-08 Score=84.12 Aligned_cols=174 Identities=11% Similarity=0.015 Sum_probs=108.0
Q ss_pred ccCCCCCCCEEEEcc---CCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEE-eCCC--cEEEEEeecCC
Q psy13856 28 TESPLRIGHTLISCD---TQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATS-SFHE--AAKHLGTVQSS 97 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s---~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~-s~d~--~i~~~d~~~~~ 97 (271)
.....|||+.|+..+ .+..|.+|++ ...+....+. +...+|+|||+.|+.. +.++ .|++||. .
T Consensus 203 ~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~----~~~~~~SPDG~~La~~~~~~g~~~I~~~d~---~ 275 (429)
T PRK03629 203 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH----NGAPAFSPDGSKLAFALSKTGSLNLYVMDL---A 275 (429)
T ss_pred eeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC----cCCeEECCCCCEEEEEEcCCCCcEEEEEEC---C
Confidence 344557999887653 3457888887 2333333344 5578999999988754 4454 4778887 4
Q ss_pred CCceeecc----ceeeEEEeeccceee------e--EEEE-e-eCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEE
Q psy13856 98 SPACLQPK----YFKLTVYSTKLTRIL------I--LVRI-C-GGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASC 163 (271)
Q Consensus 98 ~~~~~~~~----~~~~~~~~~~~~~l~------~--~v~i-~-~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~ 163 (271)
++...+.. ......|+++++.++ + .+.+ . ..+ ....+..+........|+| |+++|+..
T Consensus 276 tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g---~~~~lt~~~~~~~~~~~Sp----DG~~Ia~~ 348 (429)
T PRK03629 276 SGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGG---APQRITWEGSQNQDADVSS----DGKFMVMV 348 (429)
T ss_pred CCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCC---CeEEeecCCCCccCEEECC----CCCEEEEE
Confidence 44443332 224556777888766 2 2322 2 223 1223333444556788999 68888776
Q ss_pred eCC---CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCc---EEEEEeC
Q psy13856 164 SQD---RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNS---VSLWKEN 219 (271)
Q Consensus 164 ~~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~---v~iw~~~ 219 (271)
+.+ ..+.+||+.++.. ..+... .......|+|||++|+.++.++. +.+++++
T Consensus 349 ~~~~g~~~I~~~dl~~g~~---~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~ 406 (429)
T PRK03629 349 SSNGGQQHIAKQDLATGGV---QVLTDT-FLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD 406 (429)
T ss_pred EccCCCceEEEEECCCCCe---EEeCCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECC
Confidence 543 3588899887763 223221 12346789999999999988764 6666664
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=5.1e-09 Score=82.92 Aligned_cols=175 Identities=14% Similarity=0.135 Sum_probs=127.3
Q ss_pred CCCEEEEccCCCeEEeccc---------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 34 IGHTLISCDTQAHIGIRST---------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~---------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
.-..|+.|-..|++.=+.+ .+....|... +..+-|+-..+.+++.+.|..+ .|-.. +.+..+..
T Consensus 79 e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~----v~~~if~~~~e~V~s~~~dk~~-~~hc~--e~~~~lg~ 151 (404)
T KOG1409|consen 79 ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQAR----VSAIVFSLTHEWVLSTGKDKQF-AWHCT--ESGNRLGG 151 (404)
T ss_pred cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcc----eeeEEecCCceeEEEeccccce-EEEee--ccCCcccc
Confidence 4456777777788877766 5566788888 9999999989999999999999 67653 33333322
Q ss_pred cceeeEEEeec---cceee----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcC
Q psy13856 105 KYFKLTVYSTK---LTRIL----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSN 175 (271)
Q Consensus 105 ~~~~~~~~~~~---~~~l~----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 175 (271)
..+........ .-.++ +.+.+ .......++..+.+|.+.+.+++|.| ...++.+|..|..+.+||+-
T Consensus 152 Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~----~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 152 YNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP----GQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred eEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC----CCcEEEeccccCceEEEecc
Confidence 21111000000 01111 33333 22233378889999999999999999 47899999999999999997
Q ss_pred CCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 176 DYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 176 ~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
-.+.. ...+.+|...|..+...+.-+.|.+++.||.|.+|+.+.
T Consensus 228 g~~g~-~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 228 GRKGT-AYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred CCcce-eeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 55432 567789999999998888888999999999999999874
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.5e-09 Score=79.72 Aligned_cols=106 Identities=14% Similarity=0.172 Sum_probs=74.4
Q ss_pred ecccCCCCCCCEEE--EccCCCeEEeccc--eeeeccccccccccceEEEEcCCCCeEEEEeCC---CcEEEEEeecCCC
Q psy13856 26 TYTESPLRIGHTLI--SCDTQAHIGIRST--ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH---EAAKHLGTVQSSS 98 (271)
Q Consensus 26 ~~~~~~~~~g~~l~--s~s~d~~i~lwd~--~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d---~~i~~~d~~~~~~ 98 (271)
+......|+|+.+| .|..++.|.+||. .....-+... +..+.|+|+|++|+.++.+ |.+.+||. ++
T Consensus 62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~~~~----~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~---~~ 134 (194)
T PF08662_consen 62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFGTQP----RNTISWSPDGRFLVLAGFGNLNGDLEFWDV---RK 134 (194)
T ss_pred eEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeecCCC----ceEEEECCCCCEEEEEEccCCCcEEEEEEC---CC
Confidence 44444556888654 4556789999999 2222233445 7889999999999998754 56999998 21
Q ss_pred CceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC------CCeEEEE
Q psy13856 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ------DRKVIIW 172 (271)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~------dg~i~iw 172 (271)
. +.+.... | ..+..++|+| ||++|+++.. |+.++||
T Consensus 135 ~--------------------------------~~i~~~~-~-~~~t~~~WsP----dGr~~~ta~t~~r~~~dng~~Iw 176 (194)
T PF08662_consen 135 K--------------------------------KKISTFE-H-SDATDVEWSP----DGRYLATATTSPRLRVDNGFKIW 176 (194)
T ss_pred C--------------------------------EEeeccc-c-CcEEEEEEcC----CCCEEEEEEeccceeccccEEEE
Confidence 1 3333332 3 3478999999 7999998874 7888999
Q ss_pred EcCC
Q psy13856 173 TSND 176 (271)
Q Consensus 173 d~~~ 176 (271)
+...
T Consensus 177 ~~~G 180 (194)
T PF08662_consen 177 SFQG 180 (194)
T ss_pred EecC
Confidence 9854
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.07 E-value=6.9e-10 Score=90.89 Aligned_cols=166 Identities=17% Similarity=0.185 Sum_probs=120.3
Q ss_pred CCcceeEE--eeceeEeeccccccceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcC
Q psy13856 2 LSKEWLLV--SCDGLLMTLKPTLEIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSP 74 (271)
Q Consensus 2 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~ 74 (271)
+-|.|+++ +....+..++.-.+ +.....+|.=-+|++++..|.++--|+ +..+..-.+. +..+.-+|
T Consensus 188 AQK~y~yvYD~~GtElHClk~~~~--v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~----~~vm~qNP 261 (545)
T KOG1272|consen 188 AQKKYVYVYDNNGTELHCLKRHIR--VARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR----TDVMKQNP 261 (545)
T ss_pred hhhceEEEecCCCcEEeehhhcCc--hhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCc----cchhhcCC
Confidence 34556555 33455666665433 344445556678999999999999998 4555555566 67788888
Q ss_pred CCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCC
Q psy13856 75 KLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWG 154 (271)
Q Consensus 75 ~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 154 (271)
-...+-.|...|+|.+|.- ... +++..+..|.++|.+|++.+
T Consensus 262 ~NaVih~GhsnGtVSlWSP---------------------------------~sk--ePLvKiLcH~g~V~siAv~~--- 303 (545)
T KOG1272|consen 262 YNAVIHLGHSNGTVSLWSP---------------------------------NSK--EPLVKILCHRGPVSSIAVDR--- 303 (545)
T ss_pred ccceEEEcCCCceEEecCC---------------------------------CCc--chHHHHHhcCCCcceEEECC---
Confidence 8889999999999999986 112 55666667999999999999
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q psy13856 155 LSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 155 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~ 217 (271)
+|.|++|.+.|+.++|||+++-.. +..+.. .-+...+++|..|. ||.+- ...|.||.
T Consensus 304 -~G~YMaTtG~Dr~~kIWDlR~~~q--l~t~~t-p~~a~~ls~Sqkgl-LA~~~-G~~v~iw~ 360 (545)
T KOG1272|consen 304 -GGRYMATTGLDRKVKIWDLRNFYQ--LHTYRT-PHPASNLSLSQKGL-LALSY-GDHVQIWK 360 (545)
T ss_pred -CCcEEeecccccceeEeeeccccc--cceeec-CCCccccccccccc-eeeec-CCeeeeeh
Confidence 699999999999999999998654 333333 34567788886653 44444 44699995
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.6e-09 Score=87.25 Aligned_cols=131 Identities=11% Similarity=-0.052 Sum_probs=100.7
Q ss_pred eeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEE
Q psy13856 54 SLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIE 133 (271)
Q Consensus 54 ~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~ 133 (271)
+-+.+|.+- |.++.|+.++++|++|+.|..+++|... ..... ... ++
T Consensus 50 KD~~~H~GC----iNAlqFS~N~~~L~SGGDD~~~~~W~~d---e~~~~------------------------k~~--KP 96 (609)
T KOG4227|consen 50 KDVREHTGC----INALQFSHNDRFLASGGDDMHGRVWNVD---ELMVR------------------------KTP--KP 96 (609)
T ss_pred hhhhhhccc----cceeeeccCCeEEeecCCcceeeeechH---HHHhh------------------------cCC--CC
Confidence 445688888 9999999999999999999999999972 11100 111 33
Q ss_pred eEEec-CCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCc
Q psy13856 134 ETKLE-NHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNS 212 (271)
Q Consensus 134 ~~~~~-~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~ 212 (271)
+.... .|.+.|.+++|+. ....+.+|..+++|..-|+++.+.+-+..-....+.|+.+..+|..+.|++.+.++.
T Consensus 97 I~~~~~~H~SNIF~L~F~~----~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~ 172 (609)
T KOG4227|consen 97 IGVMEHPHRSNIFSLEFDL----ENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKL 172 (609)
T ss_pred ceeccCccccceEEEEEcc----CCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCce
Confidence 33333 3558999999998 478999999999999999998764222222233459999999999999999999999
Q ss_pred EEEEEeCCC
Q psy13856 213 VSLWKENTD 221 (271)
Q Consensus 213 v~iw~~~~~ 221 (271)
|.+||.+..
T Consensus 173 V~~~D~Rd~ 181 (609)
T KOG4227|consen 173 VSFIDNRDR 181 (609)
T ss_pred EEEEeccCC
Confidence 999999754
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.3e-08 Score=82.40 Aligned_cols=175 Identities=12% Similarity=0.059 Sum_probs=107.3
Q ss_pred cccCCCCCCCEEEEccCC---CeEEeccc----eeeeccccccccccceEEEEcCCCCeEE-EEeCCC--cEEEEEeecC
Q psy13856 27 YTESPLRIGHTLISCDTQ---AHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSA-TSSFHE--AAKHLGTVQS 96 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d---~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~-s~s~d~--~i~~~d~~~~ 96 (271)
......|||+.|+..+.+ ..|.+||+ ...+..+.+. ..+.+|+|||+.++ +.+.++ .|++|+.
T Consensus 207 ~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~----~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~--- 279 (433)
T PRK04922 207 LSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGI----NGAPSFSPDGRRLALTLSRDGNPEIYVMDL--- 279 (433)
T ss_pred ccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCC----ccCceECCCCCEEEEEEeCCCCceEEEEEC---
Confidence 344456799988877633 46899998 3334444444 55789999999765 555555 4888887
Q ss_pred CCCceeeccce----eeEEEeeccceee------e--EEEE-e-eCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEE
Q psy13856 97 SSPACLQPKYF----KLTVYSTKLTRIL------I--LVRI-C-GGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIAS 162 (271)
Q Consensus 97 ~~~~~~~~~~~----~~~~~~~~~~~l~------~--~v~i-~-~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s 162 (271)
.++...+.... ....++.+++.++ + .+.+ . ..+..+ .+..+.......+|+| |+++|+.
T Consensus 280 ~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~---~lt~~g~~~~~~~~Sp----DG~~Ia~ 352 (433)
T PRK04922 280 GSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE---RLTFQGNYNARASVSP----DGKKIAM 352 (433)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeE---EeecCCCCccCEEECC----CCCEEEE
Confidence 44544433211 3456777777766 2 2333 2 233212 2222334455789999 6888877
Q ss_pred EeCCC---eEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC---CcEEEEEeC
Q psy13856 163 CSQDR---KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD---NSVSLWKEN 219 (271)
Q Consensus 163 ~~~dg---~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D---~~v~iw~~~ 219 (271)
.+.++ .|.+||+.++.. ..+. +........|+|+|++++..+.+ +.|.+++++
T Consensus 353 ~~~~~~~~~I~v~d~~~g~~---~~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~ 411 (433)
T PRK04922 353 VHGSGGQYRIAVMDLSTGSV---RTLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTD 411 (433)
T ss_pred EECCCCceeEEEEECCCCCe---EECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 65433 699999987663 2332 22234567899999988777653 346666654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.4e-08 Score=84.90 Aligned_cols=150 Identities=13% Similarity=0.003 Sum_probs=95.0
Q ss_pred cccCCCCCCCEEEEccCC---CeEEeccc----eeeeccccccccccceEEEEcCCCCeEE-EEeCCCcEEEEEeecCCC
Q psy13856 27 YTESPLRIGHTLISCDTQ---AHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSA-TSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d---~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~-s~s~d~~i~~~d~~~~~~ 98 (271)
......|||+.|+..+.+ ..|.+||+ ...+....+. +...+|+|||+.|+ +.+.++...+|... .
T Consensus 199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~----~~~~~~SPDG~~la~~~~~~g~~~Iy~~d--~- 271 (427)
T PRK02889 199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGS----NSAPAWSPDGRTLAVALSRDGNSQIYTVN--A- 271 (427)
T ss_pred ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCC----ccceEECCCCCEEEEEEccCCCceEEEEE--C-
Confidence 344456799988876643 45899998 3333334444 66889999999876 56778887777652 0
Q ss_pred CceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC-CCeEEEEEcC--
Q psy13856 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ-DRKVIIWTSN-- 175 (271)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~-dg~i~iwd~~-- 175 (271)
..+ ....+..+........|+| ||+.|+..+. ++...+|.+.
T Consensus 272 ----------------------------~~~---~~~~lt~~~~~~~~~~wSp----DG~~l~f~s~~~g~~~Iy~~~~~ 316 (427)
T PRK02889 272 ----------------------------DGS---GLRRLTQSSGIDTEPFFSP----DGRSIYFTSDRGGAPQIYRMPAS 316 (427)
T ss_pred ----------------------------CCC---CcEECCCCCCCCcCeEEcC----CCCEEEEEecCCCCcEEEEEECC
Confidence 111 1223333444556788999 6887776554 4666666654
Q ss_pred CCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCC---cEEEEEeCCC
Q psy13856 176 DYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDN---SVSLWKENTD 221 (271)
Q Consensus 176 ~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~---~v~iw~~~~~ 221 (271)
.+.. ..+..........+|+|+|++|+..+.++ .|.+||+.++
T Consensus 317 ~g~~---~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 317 GGAA---QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred CCce---EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCC
Confidence 3332 22222223344678999999998877654 6999998765
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-08 Score=85.50 Aligned_cols=179 Identities=13% Similarity=0.046 Sum_probs=114.2
Q ss_pred cCCCCCCCE-EEEccCCCeEEeccc---eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCcee--
Q psy13856 29 ESPLRIGHT-LISCDTQAHIGIRST---ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACL-- 102 (271)
Q Consensus 29 ~~~~~~g~~-l~s~s~d~~i~lwd~---~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~-- 102 (271)
....|||++ +|+|-..-.|++||+ --.+..|.+. ..|.-.-++.|-..++---.|.+|.+..- -|.-.
T Consensus 57 ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDa--e~V~feiLsDD~SK~v~L~~DR~IefHak----~G~hy~~ 130 (703)
T KOG2321|consen 57 IKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDA--EVVDFEILSDDYSKSVFLQNDRTIEFHAK----YGRHYRT 130 (703)
T ss_pred eEecCCCcEEEEecccCCceEEEEcccceeeeeecccc--cceeEEEeccchhhheEeecCceeeehhh----cCeeeee
Confidence 344579995 788888899999999 2234455443 11333334445455555556777744221 11111
Q ss_pred --eccceeeEEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEc
Q psy13856 103 --QPKYFKLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTS 174 (271)
Q Consensus 103 --~~~~~~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~ 174 (271)
...+...+........+. ...++ ...+ ..+..+....+.+++|..++. ..+|++|+.||.+-+||.
T Consensus 131 RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqG--rfL~P~~~~~~~lN~v~in~~----hgLla~Gt~~g~VEfwDp 204 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQG--RFLNPFETDSGELNVVSINEE----HGLLACGTEDGVVEFWDP 204 (703)
T ss_pred ecCcCCccccccCCCccEEEeecCcceEEEEcccc--ccccccccccccceeeeecCc----cceEEecccCceEEEecc
Confidence 111111111111122222 33344 5666 566777777789999999994 789999999999999999
Q ss_pred CCCceeeeee------eccCCC-----CeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 175 NDYVTWTPFI------MNTFDD-----VVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 175 ~~~~~~~~~~------~~~h~~-----~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+.... +.. +..|.+ .|+++.|+.+|-.+++|..+|.+.|||++..
T Consensus 205 R~ksr--v~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~ 260 (703)
T KOG2321|consen 205 RDKSR--VGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRAS 260 (703)
T ss_pred hhhhh--heeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccC
Confidence 87542 221 223333 4999999999999999999999999999875
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=4.9e-08 Score=78.09 Aligned_cols=178 Identities=11% Similarity=0.075 Sum_probs=115.0
Q ss_pred CCCCCCEEEEccCCCeEEeccc--eeeeccccccccccceEEEEcCCCCeEEEEeCC--CcEEEEEeecCCCCceeeccc
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST--ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH--EAAKHLGTVQSSSPACLQPKY 106 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~--~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d--~~i~~~d~~~~~~~~~~~~~~ 106 (271)
...+...|..|+.||. ++|.. ... ..|....-..|-..-|+. .++|..+.+ ..+++++. +....+....
T Consensus 13 ~Nqd~~~lsvGs~~Gy-k~~~~~~~~k-~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~---Kk~~~ICe~~ 85 (391)
T KOG2110|consen 13 FNQDSTLLSVGSKDGY-KIFSCSPFEK-CFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHF---KKKTTICEIF 85 (391)
T ss_pred eccceeEEEccCCCce-eEEecCchHH-hhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEc---ccCceEEEEe
Confidence 4457778888888763 45554 111 222222122244555664 355555444 34778887 6666666666
Q ss_pred eeeEEEeec--cceee----eEEEEeeCCceEEeEEecC---CCcceEEEEEccCCCCCCcEEEEEe--CCCeEEEEEcC
Q psy13856 107 FKLTVYSTK--LTRIL----ILVRICGGDKWIEETKLEN---HSDWVRDVAWAPSWGLSKCMIASCS--QDRKVIIWTSN 175 (271)
Q Consensus 107 ~~~~~~~~~--~~~l~----~~v~i~~~~~~~~~~~~~~---h~~~v~~v~~~p~~~~~~~~l~s~~--~dg~i~iwd~~ 175 (271)
++..+.++. -++++ ..|.|-+-..++.++++.. +...+.+++.++ .+.+++--+ ..|.|.+||..
T Consensus 86 fpt~IL~VrmNr~RLvV~Lee~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~----~n~ylAyp~s~t~GdV~l~d~~ 161 (391)
T KOG2110|consen 86 FPTSILAVRMNRKRLVVCLEESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNN----ANCYLAYPGSTTSGDVVLFDTI 161 (391)
T ss_pred cCCceEEEEEccceEEEEEcccEEEEecccceeehhhhccCCCccceEeeccCC----CCceEEecCCCCCceEEEEEcc
Confidence 666655544 23333 5566622223355555533 444455565555 467877543 36899999999
Q ss_pred CCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCc-EEEEEeCCC
Q psy13856 176 DYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNS-VSLWKENTD 221 (271)
Q Consensus 176 ~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~-v~iw~~~~~ 221 (271)
+... ...+..|.+++-+++|+++|.+||++|+.|+ ||++.+.++
T Consensus 162 nl~~--v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 162 NLQP--VNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred ccee--eeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 8776 7788899999999999999999999999886 789988777
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=7.9e-09 Score=82.41 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=101.9
Q ss_pred CCEEEEccCCCeEEeccc----eeeeccc-cccccccceEEEEcCCCC-eEEEEeCCCcEEEEEeecCCCCceeecccee
Q psy13856 35 GHTLISCDTQAHIGIRST----ISLLQGS-VYLRRESNKAGALSPKLN-RSATSSFHEAAKHLGTVQSSSPACLQPKYFK 108 (271)
Q Consensus 35 g~~l~s~s~d~~i~lwd~----~~~~~~h-~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~ 108 (271)
-..+|++..|-.||+|+- ...++.- ... |.+++|-|.+. .|+.|...|.. +|... .+...-+...
T Consensus 110 ~~~fava~nddvVriy~ksst~pt~Lks~sQrn----vtclawRPlsaselavgCr~gIc-iW~~s--~tln~~r~~~-- 180 (445)
T KOG2139|consen 110 IIAFAVATNDDVVRIYDKSSTCPTKLKSVSQRN----VTCLAWRPLSASELAVGCRAGIC-IWSDS--RTLNANRNIR-- 180 (445)
T ss_pred hhhhhhhccCcEEEEeccCCCCCceecchhhcc----eeEEEeccCCcceeeeeecceeE-EEEcC--cccccccccc--
Confidence 345888999999999997 2222222 233 89999999554 66666665554 88763 2222111100
Q ss_pred eEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC-CCeEEEEEcCCCceeeeeeecc
Q psy13856 109 LTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ-DRKVIIWTSNDYVTWTPFIMNT 187 (271)
Q Consensus 109 ~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~ 187 (271)
...... ..+-...+| .+|++++|++ ||..+++++. |..|+|||..++.. ......
T Consensus 181 ----------------~~s~~~-~qvl~~pgh-~pVtsmqwn~----dgt~l~tAS~gsssi~iWdpdtg~~--~pL~~~ 236 (445)
T KOG2139|consen 181 ----------------MMSTHH-LQVLQDPGH-NPVTSMQWNE----DGTILVTASFGSSSIMIWDPDTGQK--IPLIPK 236 (445)
T ss_pred ----------------cccccc-hhheeCCCC-ceeeEEEEcC----CCCEEeecccCcceEEEEcCCCCCc--cccccc
Confidence 000000 111222345 7899999999 7888888875 67899999999875 233333
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 188 h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
-.+.+.-+.|+|||.+|+++.-|+..++|+..
T Consensus 237 glgg~slLkwSPdgd~lfaAt~davfrlw~e~ 268 (445)
T KOG2139|consen 237 GLGGFSLLKWSPDGDVLFAATCDAVFRLWQEN 268 (445)
T ss_pred CCCceeeEEEcCCCCEEEEecccceeeeehhc
Confidence 45678889999999999999999999999754
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.5e-07 Score=81.23 Aligned_cols=160 Identities=13% Similarity=0.115 Sum_probs=105.6
Q ss_pred CeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeC---CCcEEEEEeecCCCCceeeccce----eeEEEe
Q psy13856 45 AHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSF---HEAAKHLGTVQSSSPACLQPKYF----KLTVYS 113 (271)
Q Consensus 45 ~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~---d~~i~~~d~~~~~~~~~~~~~~~----~~~~~~ 113 (271)
..|.++|. .+.+..|... +.+.+|+|||+.|+..+. +..|++|++ .++.......+ ....++
T Consensus 182 ~~l~~~d~dg~~~~~lt~~~~~----v~~p~wSpDG~~lay~s~~~g~~~i~~~dl---~~g~~~~l~~~~g~~~~~~~S 254 (435)
T PRK05137 182 KRLAIMDQDGANVRYLTDGSSL----VLTPRFSPNRQEITYMSYANGRPRVYLLDL---ETGQRELVGNFPGMTFAPRFS 254 (435)
T ss_pred eEEEEECCCCCCcEEEecCCCC----eEeeEECCCCCEEEEEEecCCCCEEEEEEC---CCCcEEEeecCCCcccCcEEC
Confidence 37888887 5556677777 899999999998887763 467999998 55544332211 234577
Q ss_pred eccceee--------eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC-CC--eEEEEEcCCCceee
Q psy13856 114 TKLTRIL--------ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ-DR--KVIIWTSNDYVTWT 181 (271)
Q Consensus 114 ~~~~~l~--------~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~ 181 (271)
++++.++ ..+.+ ...+ .....+..+........|+| |+..|+..+. +| .|+++|...+.
T Consensus 255 PDG~~la~~~~~~g~~~Iy~~d~~~--~~~~~Lt~~~~~~~~~~~sp----DG~~i~f~s~~~g~~~Iy~~d~~g~~--- 325 (435)
T PRK05137 255 PDGRKVVMSLSQGGNTDIYTMDLRS--GTTTRLTDSPAIDTSPSYSP----DGSQIVFESDRSGSPQLYVMNADGSN--- 325 (435)
T ss_pred CCCCEEEEEEecCCCceEEEEECCC--CceEEccCCCCccCceeEcC----CCCEEEEEECCCCCCeEEEEECCCCC---
Confidence 7787765 22333 2222 23344555666677899999 6888876663 33 68888877655
Q ss_pred eeeeccCCCCeEEEEEecCCCEEEEEECC---CcEEEEEeCC
Q psy13856 182 PFIMNTFDDVVWNVSWSLTGDILTVSCGD---NSVSLWKENT 220 (271)
Q Consensus 182 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~D---~~v~iw~~~~ 220 (271)
...+..+...+....|+|+|+.|+..+.+ ..|.+|++..
T Consensus 326 ~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~ 367 (435)
T PRK05137 326 PRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDG 367 (435)
T ss_pred eEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCC
Confidence 33333344556778899999999887653 3577778653
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.6e-07 Score=73.90 Aligned_cols=101 Identities=16% Similarity=0.077 Sum_probs=78.8
Q ss_pred CCCEEEE-ccCCCeEEeccc----e---eeeccccccccccceEEEEcCCCCeEEEEeCCCc-EEEEEeecCCCCceeec
Q psy13856 34 IGHTLIS-CDTQAHIGIRST----I---SLLQGSVYLRRESNKAGALSPKLNRSATSSFHEA-AKHLGTVQSSSPACLQP 104 (271)
Q Consensus 34 ~g~~l~s-~s~d~~i~lwd~----~---~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~-i~~~d~~~~~~~~~~~~ 104 (271)
+..+||. |-.-|.|.|-|+ . ..+.+|... |.+++.+.+|..+||+|..|+ ||+||. +++.
T Consensus 147 ~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~s~----Iacv~Ln~~Gt~vATaStkGTLIRIFdt---~~g~---- 215 (346)
T KOG2111|consen 147 NKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHDSD----IACVALNLQGTLVATASTKGTLIRIFDT---EDGT---- 215 (346)
T ss_pred CceEEEcCCCccceEEEEEhhhcCcCCceEEEcccCc----eeEEEEcCCccEEEEeccCcEEEEEEEc---CCCc----
Confidence 3344443 335588888888 3 678899999 999999999999999999998 678998 3333
Q ss_pred cceeeEEEeeccceeeeEEEEeeCCceEEeEEecC--CCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC
Q psy13856 105 KYFKLTVYSTKLTRILILVRICGGDKWIEETKLEN--HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY 177 (271)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~--h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 177 (271)
.+.+++. ....|.+++|+| +..+|+.+|..|++.|+.++..
T Consensus 216 ----------------------------~l~E~RRG~d~A~iy~iaFSp----~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 216 ----------------------------LLQELRRGVDRADIYCIAFSP----NSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred ----------------------------EeeeeecCCchheEEEEEeCC----CccEEEEEcCCCeEEEEEeecC
Confidence 3333322 346799999999 6999999999999999999764
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.8e-08 Score=82.23 Aligned_cols=148 Identities=16% Similarity=0.140 Sum_probs=97.2
Q ss_pred ecccCCCCCCCEEEEccCC---CeEEeccc----eeeeccccccccccceEEEEcCCCCeEE-EEeCCC--cEEEEEeec
Q psy13856 26 TYTESPLRIGHTLISCDTQ---AHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSA-TSSFHE--AAKHLGTVQ 95 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d---~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~-s~s~d~--~i~~~d~~~ 95 (271)
.+...+.|||+.|+.++.+ ..|.+||+ ...+..+.+. +.+.+|+||++.|+ +.+.++ .|++|+.
T Consensus 192 ~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~----~~~~~~spDg~~l~~~~~~~~~~~i~~~d~-- 265 (417)
T TIGR02800 192 ILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGM----NGAPAFSPDGSKLAVSLSKDGNPDIYVMDL-- 265 (417)
T ss_pred eecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCC----ccceEECCCCCEEEEEECCCCCccEEEEEC--
Confidence 4455567899988877643 47999998 3334445555 67789999998775 444444 4666665
Q ss_pred CCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC-CC--eEEEE
Q psy13856 96 SSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ-DR--KVIIW 172 (271)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~-dg--~i~iw 172 (271)
.++. ...+..+........|+| |+..|+..+. ++ .|.++
T Consensus 266 -~~~~---------------------------------~~~l~~~~~~~~~~~~s~----dg~~l~~~s~~~g~~~iy~~ 307 (417)
T TIGR02800 266 -DGKQ---------------------------------LTRLTNGPGIDTEPSWSP----DGKSIAFTSDRGGSPQIYMM 307 (417)
T ss_pred -CCCC---------------------------------EEECCCCCCCCCCEEECC----CCCEEEEEECCCCCceEEEE
Confidence 2211 122223334445678999 6887766554 33 57777
Q ss_pred EcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCC---cEEEEEeCC
Q psy13856 173 TSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDN---SVSLWKENT 220 (271)
Q Consensus 173 d~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~---~v~iw~~~~ 220 (271)
|+..++ ...+..+...+....|+|+|.+++.++.++ .|.+|++.+
T Consensus 308 d~~~~~---~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 308 DADGGE---VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred ECCCCC---EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 877655 333444455677889999999999888775 788888775
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.3e-09 Score=83.30 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=76.3
Q ss_pred EEEccCCCeEEeccc---eeee--ccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEE
Q psy13856 38 LISCDTQAHIGIRST---ISLL--QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVY 112 (271)
Q Consensus 38 l~s~s~d~~i~lwd~---~~~~--~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~ 112 (271)
=++|+.+..+..|++ ...+ ......+...|..+...||++.+|++++|+.||+|.-+
T Consensus 220 Gisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr------------------ 281 (323)
T KOG0322|consen 220 GISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR------------------ 281 (323)
T ss_pred CcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec------------------
Confidence 367788888999988 0111 11111112227889999999999999999999999872
Q ss_pred eeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEc
Q psy13856 113 STKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTS 174 (271)
Q Consensus 113 ~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~ 174 (271)
+..++..++-|.+.|++++|+| +-.++|+++.|++|-+|++
T Consensus 282 -----------------tl~pLAVLkyHsagvn~vAfsp----d~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 282 -----------------TLNPLAVLKYHSAGVNAVAFSP----DCELMAAASKDARISLWKL 322 (323)
T ss_pred -----------------cCCchhhhhhhhcceeEEEeCC----CCchhhhccCCceEEeeec
Confidence 2267778888999999999999 6899999999999999986
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=2.2e-08 Score=80.76 Aligned_cols=151 Identities=14% Similarity=0.092 Sum_probs=96.5
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC-CceeeccceeeEEE----eeccce--ee------eEEEEeeCCceEE
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSS-PACLQPKYFKLTVY----STKLTR--IL------ILVRICGGDKWIE 133 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~----~~~~~~--l~------~~v~i~~~~~~~~ 133 (271)
+..+..++.++++|.+..+....+++...... .+.+....++.... .-.... ++ ..+.+..... .+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~-~~ 143 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS-GR 143 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccc-cC
Confidence 34456778888888888888777777742221 12222221111111 111111 11 2222211010 12
Q ss_pred eEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcE
Q psy13856 134 ETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSV 213 (271)
Q Consensus 134 ~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v 213 (271)
....-||-+.+..|+|+| |+++|+++..|..|++-........ .....||+..|..++.-++ ..|+++|.|++|
T Consensus 144 ~~~~lGhvSml~dVavS~----D~~~IitaDRDEkIRvs~ypa~f~I-esfclGH~eFVS~isl~~~-~~LlS~sGD~tl 217 (390)
T KOG3914|consen 144 CEPILGHVSMLLDVAVSP----DDQFIITADRDEKIRVSRYPATFVI-ESFCLGHKEFVSTISLTDN-YLLLSGSGDKTL 217 (390)
T ss_pred cchhhhhhhhhheeeecC----CCCEEEEecCCceEEEEecCcccch-hhhccccHhheeeeeeccC-ceeeecCCCCcE
Confidence 334567999999999999 7899999999999999877664431 2345689999999998765 458999999999
Q ss_pred EEEEeCCCCce
Q psy13856 214 SLWKENTDGAW 224 (271)
Q Consensus 214 ~iw~~~~~~~~ 224 (271)
++||+.++...
T Consensus 218 r~Wd~~sgk~L 228 (390)
T KOG3914|consen 218 RLWDITSGKLL 228 (390)
T ss_pred EEEecccCCcc
Confidence 99999988443
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.1e-07 Score=81.93 Aligned_cols=160 Identities=16% Similarity=0.097 Sum_probs=102.9
Q ss_pred CeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCC---CcEEEEEeecCCCCceeeccc---e-eeEEEe
Q psy13856 45 AHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH---EAAKHLGTVQSSSPACLQPKY---F-KLTVYS 113 (271)
Q Consensus 45 ~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d---~~i~~~d~~~~~~~~~~~~~~---~-~~~~~~ 113 (271)
..|.+||. ...+..+... +.+.+|+|||+.|+..+.+ ..|++|++ ..+....... . ....++
T Consensus 184 ~~l~i~D~~g~~~~~lt~~~~~----v~~p~wSpDg~~la~~s~~~~~~~l~~~dl---~~g~~~~l~~~~g~~~~~~~S 256 (433)
T PRK04922 184 YALQVADSDGYNPQTILRSAEP----ILSPAWSPDGKKLAYVSFERGRSAIYVQDL---ATGQRELVASFRGINGAPSFS 256 (433)
T ss_pred EEEEEECCCCCCceEeecCCCc----cccccCCCCCCEEEEEecCCCCcEEEEEEC---CCCCEEEeccCCCCccCceEC
Confidence 36888887 4456666667 8899999999998887743 46888998 4444433221 1 234677
Q ss_pred eccceee--------eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC-CCe--EEEEEcCCCcee
Q psy13856 114 TKLTRIL--------ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ-DRK--VIIWTSNDYVTW 180 (271)
Q Consensus 114 ~~~~~l~--------~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~ 180 (271)
.+++.++ ..+.+ ...+ ....+..+.......+|+| |+..|+..+. +|. |.++++..+..
T Consensus 257 pDG~~l~~~~s~~g~~~Iy~~d~~~g---~~~~lt~~~~~~~~~~~sp----DG~~l~f~sd~~g~~~iy~~dl~~g~~- 328 (433)
T PRK04922 257 PDGRRLALTLSRDGNPEIYVMDLGSR---QLTRLTNHFGIDTEPTWAP----DGKSIYFTSDRGGRPQIYRVAASGGSA- 328 (433)
T ss_pred CCCCEEEEEEeCCCCceEEEEECCCC---CeEECccCCCCccceEECC----CCCEEEEEECCCCCceEEEEECCCCCe-
Confidence 7787665 23554 2233 2344555555567789999 6888776664 444 66666665542
Q ss_pred eeeeeccCCCCeEEEEEecCCCEEEEEECCC---cEEEEEeCCC
Q psy13856 181 TPFIMNTFDDVVWNVSWSLTGDILTVSCGDN---SVSLWKENTD 221 (271)
Q Consensus 181 ~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~---~v~iw~~~~~ 221 (271)
..+..+.......+|+|+|++++..+.++ .|.+|++.++
T Consensus 329 --~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g 370 (433)
T PRK04922 329 --ERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTG 370 (433)
T ss_pred --EEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCC
Confidence 22222233445689999999998776443 6899998754
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.93 E-value=7.8e-09 Score=57.02 Aligned_cols=38 Identities=26% Similarity=0.546 Sum_probs=36.2
Q ss_pred EEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEE
Q psy13856 132 IEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT 173 (271)
Q Consensus 132 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd 173 (271)
+++..+.+|.+.|.+|+|+| ++.+|++|+.|+.|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~----~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSP----DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEET----TSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEec----ccccceeeCCCCEEEEEC
Confidence 67889999999999999999 699999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.6e-07 Score=79.45 Aligned_cols=159 Identities=12% Similarity=0.039 Sum_probs=101.6
Q ss_pred eEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEe---CCCcEEEEEeecCCCCceeecc----ceeeEEEee
Q psy13856 46 HIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSS---FHEAAKHLGTVQSSSPACLQPK----YFKLTVYST 114 (271)
Q Consensus 46 ~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s---~d~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~ 114 (271)
.|.+||. .+.+..+... +.+.+|+|||+.|+..+ .+..+.+|++ .+++..... ......+++
T Consensus 180 ~l~~~d~dg~~~~~lt~~~~~----~~~p~wSPDG~~la~~s~~~g~~~i~i~dl---~~G~~~~l~~~~~~~~~~~~SP 252 (429)
T PRK03629 180 ELRVSDYDGYNQFVVHRSPQP----LMSPAWSPDGSKLAYVTFESGRSALVIQTL---ANGAVRQVASFPRHNGAPAFSP 252 (429)
T ss_pred eEEEEcCCCCCCEEeecCCCc----eeeeEEcCCCCEEEEEEecCCCcEEEEEEC---CCCCeEEccCCCCCcCCeEECC
Confidence 6888887 4445555666 88999999999888654 2356888887 444333222 123457888
Q ss_pred ccceee------e--EEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCC-Ce--EEEEEcCCCceee
Q psy13856 115 KLTRIL------I--LVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQD-RK--VIIWTSNDYVTWT 181 (271)
Q Consensus 115 ~~~~l~------~--~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d-g~--i~iwd~~~~~~~~ 181 (271)
+++.++ + .+.+ ...+ ....+..+...+....|+| |++.|+..+.+ +. |.++|...+.
T Consensus 253 DG~~La~~~~~~g~~~I~~~d~~tg---~~~~lt~~~~~~~~~~wSP----DG~~I~f~s~~~g~~~Iy~~d~~~g~--- 322 (429)
T PRK03629 253 DGSKLAFALSKTGSLNLYVMDLASG---QIRQVTDGRSNNTEPTWFP----DSQNLAYTSDQAGRPQVYKVNINGGA--- 322 (429)
T ss_pred CCCEEEEEEcCCCCcEEEEEECCCC---CEEEccCCCCCcCceEECC----CCCEEEEEeCCCCCceEEEEECCCCC---
Confidence 888776 2 3444 2233 2333444455678899999 68888766654 44 4444665554
Q ss_pred eeeeccCCCCeEEEEEecCCCEEEEEECC---CcEEEEEeCCC
Q psy13856 182 PFIMNTFDDVVWNVSWSLTGDILTVSCGD---NSVSLWKENTD 221 (271)
Q Consensus 182 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~D---~~v~iw~~~~~ 221 (271)
...+..+........|+|+|++++..+.+ ..|.+||+.++
T Consensus 323 ~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g 365 (429)
T PRK03629 323 PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 365 (429)
T ss_pred eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCC
Confidence 23333333445678999999998876653 35888888754
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.4e-08 Score=88.61 Aligned_cols=160 Identities=10% Similarity=0.050 Sum_probs=92.1
Q ss_pred ccc----eeeeccccccccccceEEEEcCCC-CeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceee----
Q psy13856 50 RST----ISLLQGSVYLRRESNKAGALSPKL-NRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRIL---- 120 (271)
Q Consensus 50 wd~----~~~~~~h~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~---- 120 (271)
|+. +..+..|... +..++.++.. .+++|||.||+||+|+.+....+. ........++..+..+.
T Consensus 1034 W~p~G~lVAhL~Ehs~~----v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~---~s~rS~ltys~~~sr~~~vt~ 1106 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSA----VIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG---GSARSELTYSPEGSRVEKVTM 1106 (1431)
T ss_pred CCccceEeehhhhcccc----ccceeecCCCCceEEEecCCceEEEeeehhhhcCc---ceeeeeEEEeccCCceEEEEe
Confidence 665 6777888888 8888887654 899999999999999984211110 00111111221221111
Q ss_pred ----eEEEE-eeCCceEEeEEecCC--Cc----------------ceEEE-EEccCCCCCCc-EEEEEeCCCeEEEEEcC
Q psy13856 121 ----ILVRI-CGGDKWIEETKLENH--SD----------------WVRDV-AWAPSWGLSKC-MIASCSQDRKVIIWTSN 175 (271)
Q Consensus 121 ----~~v~i-~~~~~~~~~~~~~~h--~~----------------~v~~v-~~~p~~~~~~~-~l~s~~~dg~i~iwd~~ 175 (271)
..+.+ ..+|..... .+ +| .. .+.++ +|... .+. .++.+..-+.|..||.+
T Consensus 1107 ~~~~~~~Av~t~DG~v~~~-~i-d~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~---~~S~~lvy~T~~~~iv~~D~r 1181 (1431)
T KOG1240|consen 1107 CGNGDQFAVSTKDGSVRVL-RI-DHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAI---VQSHVLVYATDLSRIVSWDTR 1181 (1431)
T ss_pred ccCCCeEEEEcCCCeEEEE-Ec-cccccccceeeeeecccccCCCceEEeeccccc---ccceeEEEEEeccceEEecch
Confidence 22333 344421111 11 12 00 01111 11111 223 56666667777778877
Q ss_pred CCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 176 DYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 176 ~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+....-......-.+.|++++.+|.+++++.|...|.+.+||++-+
T Consensus 1182 ~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1182 MRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 6542111122233468999999999999999999999999999866
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.93 E-value=5.6e-09 Score=97.97 Aligned_cols=199 Identities=7% Similarity=0.020 Sum_probs=126.4
Q ss_pred CCCCCCCEEEEccCCCeEEeccc-----eeeec-cccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceee
Q psy13856 30 SPLRIGHTLISCDTQAHIGIRST-----ISLLQ-GSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQ 103 (271)
Q Consensus 30 ~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~-~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~ 103 (271)
...|...+.+||+.||.+++|.. +..++ .-... |+.+.|+..|+.+..+-.||.+.+|.. .......
T Consensus 2215 ~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~----vtr~~f~~qGnk~~i~d~dg~l~l~q~---~pk~~~s 2287 (2439)
T KOG1064|consen 2215 TSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSR----VTRSRFNHQGNKFGIVDGDGDLSLWQA---SPKPYTS 2287 (2439)
T ss_pred cCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcch----hhhhhhcccCCceeeeccCCceeeccc---CCcceec
Confidence 34456778999999999999998 22222 11144 888999999999999999999999987 3222111
Q ss_pred ccce----eeEEEeeccceee--------eEEEEee---CCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCe
Q psy13856 104 PKYF----KLTVYSTKLTRIL--------ILVRICG---GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK 168 (271)
Q Consensus 104 ~~~~----~~~~~~~~~~~l~--------~~v~i~~---~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~ 168 (271)
-..+ ..-.|- +..++ +.+.+++ .....++. ..|.+.++++++.|+ ..+|++|+.+|.
T Consensus 2288 ~qchnk~~~Df~Fi--~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~----~qllisggr~G~ 2359 (2439)
T KOG1064|consen 2288 WQCHNKALSDFRFI--GSLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPK----HQLLISGGRKGE 2359 (2439)
T ss_pred cccCCccccceeee--ehhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCc----ceEEEecCCcCc
Confidence 1111 111111 11111 3444411 11112333 679999999999994 899999999999
Q ss_pred EEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccc-hh-hhhhhhhccc
Q psy13856 169 VIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTS-EQ-RAIKKELNQS 246 (271)
Q Consensus 169 i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~ 246 (271)
|++||++.... ...++. ++ ...++++++..|.++||++..- ..+.++.... .+ .......|..
T Consensus 2360 v~l~D~rqrql--~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~---~ll~~~p~e~ak~gfFr~~g~Q~~ 2424 (2439)
T KOG1064|consen 2360 VCLFDIRQRQL--RHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEF---GLLHTFPSEHAKQGFFRNIGMQIN 2424 (2439)
T ss_pred EEEeehHHHHH--HHHhhh---------hh-hhheeeccCcccceEEEEcccc---chhhcCchhhcccchhhhcCceee
Confidence 99999987553 222222 44 5678999999999999999865 3334443322 11 1223334444
Q ss_pred cccccceeeecc
Q psy13856 247 LDKWTPIHSVIS 258 (271)
Q Consensus 247 ~~~~~~~~~~~~ 258 (271)
.+....++++..
T Consensus 2425 v~~~nrifsCga 2436 (2439)
T KOG1064|consen 2425 VGQCNRIFSCGA 2436 (2439)
T ss_pred eccCceEEEecC
Confidence 566666776654
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=9.5e-08 Score=76.41 Aligned_cols=146 Identities=16% Similarity=0.110 Sum_probs=98.9
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc-------------------eeeeccccccccccceEEEEcCCCCeEEEEe-C
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST-------------------ISLLQGSVYLRRESNKAGALSPKLNRSATSS-F 84 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~-------------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s-~ 84 (271)
......|. .+..|+.|+. +-|.+|.. +..-.+| .. |++++|.+||..+++++ .
T Consensus 144 tclawRPl-saselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~p----Vtsmqwn~dgt~l~tAS~g 216 (445)
T KOG2139|consen 144 TCLAWRPL-SASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NP----VTSMQWNEDGTILVTASFG 216 (445)
T ss_pred eEEEeccC-Ccceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ce----eeEEEEcCCCCEEeecccC
Confidence 33444454 3347888888 78999987 1111233 34 89999999999999987 5
Q ss_pred CCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe
Q psy13856 85 HEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 164 (271)
Q Consensus 85 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~ 164 (271)
|..|.+||. .++.++. +. .-.-+.+.-+.|+| |+.+|.++.
T Consensus 217 sssi~iWdp---dtg~~~p------------------------------L~--~~glgg~slLkwSP----dgd~lfaAt 257 (445)
T KOG2139|consen 217 SSSIMIWDP---DTGQKIP------------------------------LI--PKGLGGFSLLKWSP----DGDVLFAAT 257 (445)
T ss_pred cceEEEEcC---CCCCccc------------------------------cc--ccCCCceeeEEEcC----CCCEEEEec
Confidence 677889998 4444322 11 11235677899999 799999999
Q ss_pred CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 165 QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
-|+..++|.....-. .....-..+.|...+|+|+|++|+.++. +.-++|.+.
T Consensus 258 ~davfrlw~e~q~wt--~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~ 309 (445)
T KOG2139|consen 258 CDAVFRLWQENQSWT--KERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLT 309 (445)
T ss_pred ccceeeeehhcccce--ecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEe
Confidence 999999997654321 1112223348999999999998766653 334456554
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=7.1e-09 Score=79.22 Aligned_cols=75 Identities=17% Similarity=0.372 Sum_probs=65.3
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEec-CCCEEEEEECCCcEEEEEeCC
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSL-TGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~v~iw~~~~ 220 (271)
..|.+++-+|. ....++.|+.||.+-+||.++... ....+..|+.+++.|.|+| ++..|++++.||.+..||.++
T Consensus 180 ~~v~~l~~hp~---qq~~v~cgt~dg~~~l~d~rn~~~-p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPA---QQHLVCCGTDDGIVGLWDARNVAM-PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcc---cccEEEEecCCCeEEEEEcccccc-hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 34889999997 678899999999999999998753 2567889999999999999 578999999999999999764
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.6e-06 Score=72.74 Aligned_cols=172 Identities=7% Similarity=0.053 Sum_probs=109.6
Q ss_pred EEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccce----e
Q psy13856 38 LISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF----K 108 (271)
Q Consensus 38 l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~----~ 108 (271)
+++-..++.|.+.|. +..+...... ...+.|+|||++++.++.|+.|.++|+ .+.+.+..... .
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~----h~~~~~s~Dgr~~yv~~rdg~vsviD~---~~~~~v~~i~~G~~~~ 81 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAP----HAGLKFSPDGRYLYVANRDGTVSVIDL---ATGKVVATIKVGGNPR 81 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTE----EEEEE-TT-SSEEEEEETTSEEEEEET---TSSSEEEEEE-SSEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCc----eeEEEecCCCCEEEEEcCCCeEEEEEC---CcccEEEEEecCCCcc
Confidence 355667799999998 4555544333 346789999999999999999999999 67777766522 3
Q ss_pred eEEEeeccceee------eEEEEeeCCceEEeEEecCC-------CcceEEEEEccCCCCCCc-EEEEEeCCCeEEEEEc
Q psy13856 109 LTVYSTKLTRIL------ILVRICGGDKWIEETKLENH-------SDWVRDVAWAPSWGLSKC-MIASCSQDRKVIIWTS 174 (271)
Q Consensus 109 ~~~~~~~~~~l~------~~v~i~~~~~~~~~~~~~~h-------~~~v~~v~~~p~~~~~~~-~l~s~~~dg~i~iwd~ 174 (271)
....+.++++++ +.+.+.+...++.++.+... ...+.+|..+|. .. ++++--.-+.|.+-|.
T Consensus 82 ~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~----~~~fVv~lkd~~~I~vVdy 157 (369)
T PF02239_consen 82 GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPG----RPEFVVNLKDTGEIWVVDY 157 (369)
T ss_dssp EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SS----SSEEEEEETTTTEEEEEET
T ss_pred eEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCC----CCEEEEEEccCCeEEEEEe
Confidence 344566788877 66777444444666665432 346778888883 55 4445455588888898
Q ss_pred CCCceeeeeeeccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeCCC
Q psy13856 175 NDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKENTD 221 (271)
Q Consensus 175 ~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~~~ 221 (271)
.+........ ...........|+|++++++.+. .++.|-++|..++
T Consensus 158 ~d~~~~~~~~-i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~ 204 (369)
T PF02239_consen 158 SDPKNLKVTT-IKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG 204 (369)
T ss_dssp TTSSCEEEEE-EE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT
T ss_pred ccccccceee-ecccccccccccCcccceeeecccccceeEEEeeccc
Confidence 7765432222 33445678899999999877754 4678999998765
|
... |
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=7.4e-09 Score=81.68 Aligned_cols=167 Identities=14% Similarity=0.116 Sum_probs=108.2
Q ss_pred CEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCC-eEEEEeCCCcEEEEEeecCCCCceeecc--c-
Q psy13856 36 HTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLN-RSATSSFHEAAKHLGTVQSSSPACLQPK--Y- 106 (271)
Q Consensus 36 ~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~~~d~~~~~~~~~~~~~--~- 106 (271)
..|+....|+.|.+|++ -..+...... +.++.|||||+ .|.+...|-.|.+|.+ .+..+.... .
T Consensus 62 ~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~ag----ls~~~WSPdgrhiL~tseF~lriTVWSL---~t~~~~~~~~pK~ 134 (447)
T KOG4497|consen 62 HILCVAYKDPKVQVWSLVQPEWYCKIDEGQAG----LSSISWSPDGRHILLTSEFDLRITVWSL---NTQKGYLLPHPKT 134 (447)
T ss_pred eeeeeeeccceEEEEEeecceeEEEeccCCCc----ceeeeECCCcceEeeeecceeEEEEEEe---ccceeEEeccccc
Confidence 35777788899999999 3444555556 78999999996 5667778999999998 555444332 1
Q ss_pred -eeeEEEeeccceee--------eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC
Q psy13856 107 -FKLTVYSTKLTRIL--------ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY 177 (271)
Q Consensus 107 -~~~~~~~~~~~~l~--------~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 177 (271)
.....+..++++-+ ..+.|..-..|..++++.-.+-..+.+.|+| ||+.+ .+||---.
T Consensus 135 ~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsP----dg~~l---------aVwd~~Le 201 (447)
T KOG4497|consen 135 NVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSP----DGNWL---------AVWDNVLE 201 (447)
T ss_pred CceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECC----CCcEE---------EEecchhh
Confidence 23344455555544 1111111223455556665566678999999 56655 46664221
Q ss_pred ceeeeeeeccC-CCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEE
Q psy13856 178 VTWTPFIMNTF-DDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITE 229 (271)
Q Consensus 178 ~~~~~~~~~~h-~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 229 (271)
...+.-| .-.+..++|+|.+++|+.|+.|+.+++.+- -.|+.+.+
T Consensus 202 ----ykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh---~tWk~f~e 247 (447)
T KOG4497|consen 202 ----YKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNH---FTWKPFGE 247 (447)
T ss_pred ----heeeeeeeccceeEEEeccccceEEeeccchhhhhhce---eeeeehhh
Confidence 1222222 246888999999999999999999998763 23555443
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.6e-07 Score=79.40 Aligned_cols=81 Identities=11% Similarity=0.236 Sum_probs=66.8
Q ss_pred EEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecC-----CCEEEE
Q psy13856 132 IEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLT-----GDILTV 206 (271)
Q Consensus 132 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~-----g~~l~s 206 (271)
..++...+....+.+++.+| |+..+++++ +.|++||+++.+. +..+.+|.++|+++.|-.+ |.++++
T Consensus 135 ~~~~~~~~~~~~~~sl~is~----D~~~l~~as--~~ik~~~~~~kev--v~~ftgh~s~v~t~~f~~~~~g~~G~~vLs 206 (541)
T KOG4547|consen 135 VIIRIWKEQKPLVSSLCISP----DGKILLTAS--RQIKVLDIETKEV--VITFTGHGSPVRTLSFTTLIDGIIGKYVLS 206 (541)
T ss_pred eeeeeeccCCCccceEEEcC----CCCEEEecc--ceEEEEEccCceE--EEEecCCCcceEEEEEEEeccccccceeee
Confidence 56666777778899999999 799999887 6899999999886 7889999999999999876 666665
Q ss_pred EE-CCCcEEEEEeCC
Q psy13856 207 SC-GDNSVSLWKENT 220 (271)
Q Consensus 207 ~s-~D~~v~iw~~~~ 220 (271)
+. .+.-+.+|..+.
T Consensus 207 sa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 207 SAAAERGITVWVVEK 221 (541)
T ss_pred ccccccceeEEEEEc
Confidence 54 466788888765
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.6e-08 Score=55.78 Aligned_cols=36 Identities=17% Similarity=0.502 Sum_probs=34.5
Q ss_pred eeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q psy13856 182 PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 182 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~ 217 (271)
...+.+|.+.|++++|+|++.+|++++.|+.|++||
T Consensus 4 ~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 4 VRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 678899999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-08 Score=83.95 Aligned_cols=155 Identities=15% Similarity=0.123 Sum_probs=116.9
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc------eeeeccccccccccceEEEEcC--CCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSP--KLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
=++.....|+.|++||.|..|.+||+ +....+|... |....|-| +.+-+++++.||.+++=.+. .
T Consensus 146 ntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~N----vfQaKFiP~s~d~ti~~~s~dgqvr~s~i~--~- 218 (559)
T KOG1334|consen 146 NTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNN----VFQAKFIPFSGDRTIVTSSRDGQVRVSEIL--E- 218 (559)
T ss_pred ceeeecccCceeeccCccceEEeehhhccCcccccccccccc----hhhhhccCCCCCcCceeccccCceeeeeec--c-
Confidence 34445578999999999999999999 4445677777 77777877 44688999999999876653 1
Q ss_pred CceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc
Q psy13856 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV 178 (271)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 178 (271)
.+..+....+..|.++|..++.-|. +..-|.+++.|+.+.-.|++...
T Consensus 219 -----------------------------t~~~e~t~rl~~h~g~vhklav~p~---sp~~f~S~geD~~v~~~Dlr~~~ 266 (559)
T KOG1334|consen 219 -----------------------------TGYVENTKRLAPHEGPVHKLAVEPD---SPKPFLSCGEDAVVFHIDLRQDV 266 (559)
T ss_pred -----------------------------ccceecceecccccCccceeeecCC---CCCcccccccccceeeeeeccCC
Confidence 2222334445569999999999997 78899999999999999998875
Q ss_pred eeeeeeecc-CCC---CeEEEEEecCC-CEEEEEECCCcEEEEEeCC
Q psy13856 179 TWTPFIMNT-FDD---VVWNVSWSLTG-DILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 179 ~~~~~~~~~-h~~---~v~~v~~~~~g-~~l~s~s~D~~v~iw~~~~ 220 (271)
......... +.. ..+.++.+|-. ..+++++.|.-+++||.+.
T Consensus 267 pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~ 313 (559)
T KOG1334|consen 267 PAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRR 313 (559)
T ss_pred ccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccc
Confidence 432222333 333 46788888865 4789999999999999864
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=5e-08 Score=77.44 Aligned_cols=98 Identities=15% Similarity=0.201 Sum_probs=78.5
Q ss_pred EEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceee
Q psy13856 37 TLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKL 109 (271)
Q Consensus 37 ~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~ 109 (271)
+-..|...|.|.+-.+ +..+.+|.+. +.++.|.+....|.+|+.|..+.+||+.
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~----~~~l~Wd~~~~~LfSg~~d~~vi~wdig--------------- 227 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGE----VTCLKWDPGQRLLFSGASDHSVIMWDIG--------------- 227 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcCcccc----eEEEEEcCCCcEEEeccccCceEEEecc---------------
Confidence 3444555566655554 7788999999 9999999999999999999999999982
Q ss_pred EEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC
Q psy13856 110 TVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 110 ~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 176 (271)
+.-....++.+|.+.|..+...+ --..+.+++.||.|.+|+++.
T Consensus 228 -------------------g~~g~~~el~gh~~kV~~l~~~~----~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 228 -------------------GRKGTAYELQGHNDKVQALSYAQ----HTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred -------------------CCcceeeeeccchhhhhhhhhhh----hheeeeeccCCCeEEEEeccc
Confidence 11134566788999999998887 367899999999999999975
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=2.1e-06 Score=73.76 Aligned_cols=181 Identities=17% Similarity=0.054 Sum_probs=103.3
Q ss_pred ccCCCCCCCE--E-EEccCCCe--EEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeC-CC----cEEEEEe
Q psy13856 28 TESPLRIGHT--L-ISCDTQAH--IGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSF-HE----AAKHLGT 93 (271)
Q Consensus 28 ~~~~~~~g~~--l-~s~s~d~~--i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~-d~----~i~~~d~ 93 (271)
....+|||+. + .+...++. |.+.++ ...+....+. ....+|||||+.|+..+. ++ .+..|+.
T Consensus 189 sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~----~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~ 264 (428)
T PRK01029 189 TPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGN----QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSL 264 (428)
T ss_pred cceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCC----ccceEECCCCCEEEEEECCCCCcceeEEEeec
Confidence 3445678864 2 24444444 555455 2333333444 456899999998876553 22 3333555
Q ss_pred ecCCCCceeecc----c-eeeEEEeeccceee------e--EEEE-ee--CCceEEeEEecCCCcceEEEEEccCCCCCC
Q psy13856 94 VQSSSPACLQPK----Y-FKLTVYSTKLTRIL------I--LVRI-CG--GDKWIEETKLENHSDWVRDVAWAPSWGLSK 157 (271)
Q Consensus 94 ~~~~~~~~~~~~----~-~~~~~~~~~~~~l~------~--~v~i-~~--~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 157 (271)
..+..+...+.. . .....++++++.++ + .+.+ .. .+ .....+..+...+....|+| ||
T Consensus 265 ~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~~lt~~~~~~~~p~wSP----DG 338 (428)
T PRK01029 265 ETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPRLLTKKYRNSSCPAWSP----DG 338 (428)
T ss_pred ccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceEEeccCCCCccceeECC----CC
Confidence 321112222111 1 13456788888766 2 2333 11 11 12333444455677899999 78
Q ss_pred cEEEEEeCC---CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEEC---CCcEEEEEeCCC
Q psy13856 158 CMIASCSQD---RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG---DNSVSLWKENTD 221 (271)
Q Consensus 158 ~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~---D~~v~iw~~~~~ 221 (271)
+.|+..+.+ ..|.+||+.+++. ..+......+....|+|||+.|+..+. ...|+++++..+
T Consensus 339 ~~Laf~~~~~g~~~I~v~dl~~g~~---~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 339 KKIAFCSVIKGVRQICVYDLATGRD---YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCe---EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 888766543 4689999988763 333333345677899999998875543 346778887654
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-08 Score=83.78 Aligned_cols=169 Identities=14% Similarity=0.055 Sum_probs=116.4
Q ss_pred ceecccCCCCCCC-EEEEccCCCeEEeccc-----------eeeeccccc--cccccceEEEEcCCCCeEEEEeCCCcEE
Q psy13856 24 IETYTESPLRIGH-TLISCDTQAHIGIRST-----------ISLLQGSVY--LRRESNKAGALSPKLNRSATSSFHEAAK 89 (271)
Q Consensus 24 ~~~~~~~~~~~g~-~l~s~s~d~~i~lwd~-----------~~~~~~h~~--~~~~~i~~~~~s~~~~~l~s~s~d~~i~ 89 (271)
+..+.....|... .+++|+.|..+|+||. +..+..|.. .....|++++|+.++.-|+++..|-.|+
T Consensus 282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY 361 (559)
T KOG1334|consen 282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY 361 (559)
T ss_pred eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence 3455555555444 8999999999999998 122222211 1122388999998888888888999998
Q ss_pred EEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCc--ceEEEEEc-cCCCCCCcEEEEEeCC
Q psy13856 90 HLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSD--WVRDVAWA-PSWGLSKCMIASCSQD 166 (271)
Q Consensus 90 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~--~v~~v~~~-p~~~~~~~~l~s~~~d 166 (271)
++.-. ...+..... . ........+.++||.. .|-.+-|- | ..+|+++|+.-
T Consensus 362 LF~~~-~~~G~~p~~----~-----------------s~~~~~~k~vYKGHrN~~TVKgVNFfGP----rsEyVvSGSDC 415 (559)
T KOG1334|consen 362 LFNKS-MGDGSEPDP----S-----------------SPREQYVKRVYKGHRNSRTVKGVNFFGP----RSEYVVSGSDC 415 (559)
T ss_pred Eeccc-cccCCCCCC----C-----------------cchhhccchhhcccccccccceeeeccC----ccceEEecCcc
Confidence 98531 011110000 0 0001123344788864 36666654 6 48999999999
Q ss_pred CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 167 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
|.|.||+..+++. +..+.+....|+|+.-+|.-.+||+++-|..|+||-+.+
T Consensus 416 GhIFiW~K~t~ei--i~~MegDr~VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 416 GHIFIWDKKTGEI--IRFMEGDRHVVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred ceEEEEecchhHH--HHHhhcccceEeccCCCCCCchhhccCCccceeeecCCc
Confidence 9999999999886 666666666899999999999999999999999998843
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.9e-07 Score=78.92 Aligned_cols=152 Identities=7% Similarity=0.057 Sum_probs=104.5
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccce
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF 107 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~ 107 (271)
++..+++.|+. ..|.-.++ +..+....+. ++++..++-..+|++|+.+|.|..||-+ ........
T Consensus 144 ~scDly~~gsg-~evYRlNLEqGrfL~P~~~~~~~----lN~v~in~~hgLla~Gt~~g~VEfwDpR---~ksrv~~l-- 213 (703)
T KOG2321|consen 144 PSCDLYLVGSG-SEVYRLNLEQGRFLNPFETDSGE----LNVVSINEEHGLLACGTEDGVVEFWDPR---DKSRVGTL-- 213 (703)
T ss_pred CCccEEEeecC-cceEEEEcccccccccccccccc----ceeeeecCccceEEecccCceEEEecch---hhhhheee--
Confidence 34566666665 45555555 5555555566 8999999998899999999999999973 32222211
Q ss_pred eeEEEeeccceeeeEEEEeeCCceEEeEEecCC-----CcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeee
Q psy13856 108 KLTVYSTKLTRILILVRICGGDKWIEETKLENH-----SDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP 182 (271)
Q Consensus 108 ~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h-----~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 182 (271)
.....+..| ...|+++.|+. +|-.++.|..+|.+.|||++...++ .
T Consensus 214 ------------------------~~~~~v~s~pg~~~~~svTal~F~d----~gL~~aVGts~G~v~iyDLRa~~pl-~ 264 (703)
T KOG2321|consen 214 ------------------------DAASSVNSHPGGDAAPSVTALKFRD----DGLHVAVGTSTGSVLIYDLRASKPL-L 264 (703)
T ss_pred ------------------------ecccccCCCccccccCcceEEEecC----CceeEEeeccCCcEEEEEcccCCce-e
Confidence 111111222 24599999998 6999999999999999999998753 2
Q ss_pred eeeccCCCCeEEEEEecC--CCEEEEEECCCcEEEEEeCCCCce
Q psy13856 183 FIMNTFDDVVWNVSWSLT--GDILTVSCGDNSVSLWKENTDGAW 224 (271)
Q Consensus 183 ~~~~~h~~~v~~v~~~~~--g~~l~s~s~D~~v~iw~~~~~~~~ 224 (271)
..-++..-+|..+.|.+. +..+++. +...++|||-.++..+
T Consensus 265 ~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~ 307 (703)
T KOG2321|consen 265 VKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPM 307 (703)
T ss_pred ecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCce
Confidence 222334568999999875 3445544 4568999999887443
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=7.1e-07 Score=75.54 Aligned_cols=150 Identities=19% Similarity=0.137 Sum_probs=106.1
Q ss_pred CCCCeEEEEeCCCcEEEEEeecCCCCceeeccc--------eeeEEEeec------------------cc--eee-----
Q psy13856 74 PKLNRSATSSFHEAAKHLGTVQSSSPACLQPKY--------FKLTVYSTK------------------LT--RIL----- 120 (271)
Q Consensus 74 ~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~--------~~~~~~~~~------------------~~--~l~----- 120 (271)
|...++|....||.+++|+. ..++....+. .....|... .. .++
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t---~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~ 79 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDT---AKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQ 79 (541)
T ss_pred chhheEeecCCCCeEEEEEc---cCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCC
Confidence 34568999999999999998 4444443321 011112111 00 011
Q ss_pred eEEEE--eeCCceEEeEEe--cCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEE
Q psy13856 121 ILVRI--CGGDKWIEETKL--ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVS 196 (271)
Q Consensus 121 ~~v~i--~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~ 196 (271)
+.|.+ ...+ +....+ ..|.+.|.++.++. +-..|.|++.|+.+..|+...... ..........+.+++
T Consensus 80 g~v~~ys~~~g--~it~~~st~~h~~~v~~~~~~~----~~~ciyS~~ad~~v~~~~~~~~~~--~~~~~~~~~~~~sl~ 151 (541)
T KOG4547|consen 80 GSVLLYSVAGG--EITAKLSTDKHYGNVNEILDAQ----RLGCIYSVGADLKVVYILEKEKVI--IRIWKEQKPLVSSLC 151 (541)
T ss_pred ccEEEEEecCC--eEEEEEecCCCCCcceeeeccc----ccCceEecCCceeEEEEeccccee--eeeeccCCCccceEE
Confidence 34444 3333 222333 45889999999988 478999999999999999988775 556667777899999
Q ss_pred EecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhhhh
Q psy13856 197 WSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQRAI 239 (271)
Q Consensus 197 ~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~~ 239 (271)
.+|||.+|++++ ++|++|++++. +.+..+.+|.+....
T Consensus 152 is~D~~~l~~as--~~ik~~~~~~k---evv~~ftgh~s~v~t 189 (541)
T KOG4547|consen 152 ISPDGKILLTAS--RQIKVLDIETK---EVVITFTGHGSPVRT 189 (541)
T ss_pred EcCCCCEEEecc--ceEEEEEccCc---eEEEEecCCCcceEE
Confidence 999999999986 57999999988 788888888877554
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=2.6e-06 Score=73.31 Aligned_cols=137 Identities=12% Similarity=0.034 Sum_probs=87.2
Q ss_pred cCCCCCCCEEE-EccCCCeEEeccc------eeeeccccccccccceEEEEcCCCCeEEEEeC-CCcEEEEEeecCCCCc
Q psy13856 29 ESPLRIGHTLI-SCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSPKLNRSATSSF-HEAAKHLGTVQSSSPA 100 (271)
Q Consensus 29 ~~~~~~g~~l~-s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~~~d~~~~~~~~ 100 (271)
....|||+.|+ +.+.++...||.+ ...+..+... .....|+|||+.|+..+. ++...+|... .
T Consensus 245 ~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~----~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~--~--- 315 (427)
T PRK02889 245 PAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQSSGI----DTEPFFSPDGRSIYFTSDRGGAPQIYRMP--A--- 315 (427)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCCCCCC----CcCeEEcCCCCEEEEEecCCCCcEEEEEE--C---
Confidence 34567998765 6778888888765 3444445544 567889999998876654 4666666652 0
Q ss_pred eeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCC---eEEEEEcCCC
Q psy13856 101 CLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDR---KVIIWTSNDY 177 (271)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg---~i~iwd~~~~ 177 (271)
..+..+.+ .+. ........|+| ||++|+..+.++ .|.+||+.++
T Consensus 316 --------------------------~~g~~~~l-t~~--g~~~~~~~~Sp----DG~~Ia~~s~~~g~~~I~v~d~~~g 362 (427)
T PRK02889 316 --------------------------SGGAAQRV-TFT--GSYNTSPRISP----DGKLLAYISRVGGAFKLYVQDLATG 362 (427)
T ss_pred --------------------------CCCceEEE-ecC--CCCcCceEECC----CCCEEEEEEccCCcEEEEEEECCCC
Confidence 01110111 112 22334678999 799988777654 6999999877
Q ss_pred ceeeeeeeccCCCCeEEEEEecCCCEEEEEECCC
Q psy13856 178 VTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDN 211 (271)
Q Consensus 178 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 211 (271)
.. ..+... .......|+|+|++|+.++.++
T Consensus 363 ~~---~~lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 363 QV---TALTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred Ce---EEccCC-CCccCceECCCCCEEEEEEecC
Confidence 63 223222 2346789999999988877643
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=6.4e-06 Score=71.07 Aligned_cols=175 Identities=11% Similarity=-0.004 Sum_probs=100.0
Q ss_pred cccCCCCCCCEEEEccCC---CeEEeccc----eeeeccccccccccceEEEEcCCCCeEE-EEeCCC--cEEEEEeecC
Q psy13856 27 YTESPLRIGHTLISCDTQ---AHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSA-TSSFHE--AAKHLGTVQS 96 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d---~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~-s~s~d~--~i~~~d~~~~ 96 (271)
......|||+.|+..+.+ ..|.+|++ ...+....+. +...+|+|||+.|+ +.+.++ .|+++|.
T Consensus 202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~----~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~--- 274 (430)
T PRK00178 202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGL----NGAPAWSPDGSKLAFVLSKDGNPEIYVMDL--- 274 (430)
T ss_pred eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCC----cCCeEECCCCCEEEEEEccCCCceEEEEEC---
Confidence 333455799988776543 36778887 3333333344 55789999999876 455555 4777787
Q ss_pred CCCceeeccc----eeeEEEeeccceee--------eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEE
Q psy13856 97 SSPACLQPKY----FKLTVYSTKLTRIL--------ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIAS 162 (271)
Q Consensus 97 ~~~~~~~~~~----~~~~~~~~~~~~l~--------~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s 162 (271)
.++...+... .....++.+++.++ ..+.+ ...+..+. +...........|+| ++.+++.
T Consensus 275 ~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~---lt~~~~~~~~~~~Sp----dg~~i~~ 347 (430)
T PRK00178 275 ASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER---VTFVGNYNARPRLSA----DGKTLVM 347 (430)
T ss_pred CCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE---eecCCCCccceEECC----CCCEEEE
Confidence 4444332221 13345677777665 23333 22332121 111122334578999 6888876
Q ss_pred EeCC-C--eEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC-C--cEEEEEeC
Q psy13856 163 CSQD-R--KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD-N--SVSLWKEN 219 (271)
Q Consensus 163 ~~~d-g--~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-~--~v~iw~~~ 219 (271)
.+.+ + .|.++|+.++.. ..+.. ........|+|+|+.++..+.+ + .+.+++++
T Consensus 348 ~~~~~~~~~l~~~dl~tg~~---~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~ 406 (430)
T PRK00178 348 VHRQDGNFHVAAQDLQRGSV---RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSIN 406 (430)
T ss_pred EEccCCceEEEEEECCCCCE---EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECC
Confidence 6643 3 578889887653 22221 1122346899999998877653 3 35555553
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.7e-07 Score=74.53 Aligned_cols=145 Identities=8% Similarity=-0.058 Sum_probs=100.7
Q ss_pred EEccCCCeEEeccc---eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeec
Q psy13856 39 ISCDTQAHIGIRST---ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTK 115 (271)
Q Consensus 39 ~s~s~d~~i~lwd~---~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~ 115 (271)
++.+.+..+-+-|+ .......... |.++.|...++.+..|..+|.|..+|++....
T Consensus 228 fs~G~sqqv~L~nvetg~~qsf~sksD----VfAlQf~~s~nLv~~GcRngeI~~iDLR~rnq----------------- 286 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQQSFQSKSD----VFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQ----------------- 286 (425)
T ss_pred ecccccceeEEEEeecccccccccchh----HHHHHhcccCCeeEecccCCcEEEEEeeeccc-----------------
Confidence 44444566666555 2111223334 88899998889999999999999999842111
Q ss_pred cceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce-eeeeeeccCCCCeE-
Q psy13856 116 LTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT-WTPFIMNTFDDVVW- 193 (271)
Q Consensus 116 ~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~- 193 (271)
+.-.+.+.+. |.+.|+++..-.. ++.+|++.+.+|+|++||.+..++ ..+..+++|...-.
T Consensus 287 -------------G~~~~a~rly-h~Ssvtslq~Lq~---s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~ 349 (425)
T KOG2695|consen 287 -------------GNGWCAQRLY-HDSSVTSLQILQF---SQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAY 349 (425)
T ss_pred -------------CCCcceEEEE-cCcchhhhhhhcc---ccceEeeccCcCceeEeeehhhhcccceeeeecccccccc
Confidence 1113444444 8888988876543 578899999999999999997654 12567788864332
Q ss_pred -EEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 194 -NVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 194 -~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
-+..++....++++++|...+||.++.+
T Consensus 350 l~~~v~~eeg~I~s~GdDcytRiWsl~~g 378 (425)
T KOG2695|consen 350 LPAHVKEEEGSIFSVGDDCYTRIWSLDSG 378 (425)
T ss_pred cccccccccceEEEccCeeEEEEEecccC
Confidence 2344566778888999999999999977
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.5e-06 Score=62.79 Aligned_cols=186 Identities=14% Similarity=-0.022 Sum_probs=114.2
Q ss_pred CCCEEEEccCCCeEEeccc------eeeeccccccccccceEEE-EcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccc
Q psy13856 34 IGHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGA-LSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKY 106 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~-~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~ 106 (271)
...+||.|+.-|...+|.. ++....|... |.-+. +.-....+..++.|.++++.++..+..+..+....
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~----v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~ 158 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNND----VTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQN 158 (344)
T ss_pred cccEEEeccccceeeeecccCcccceeeecccccc----hhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccc
Confidence 4457899988899999988 2333333222 11110 11112356677889999998874333333332221
Q ss_pred --eeeEEEeeccceee-----eEEEE---eeCCceEEeE-EecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcC
Q psy13856 107 --FKLTVYSTKLTRIL-----ILVRI---CGGDKWIEET-KLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSN 175 (271)
Q Consensus 107 --~~~~~~~~~~~~l~-----~~v~i---~~~~~~~~~~-~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 175 (271)
......+.++++.+ ..|.. ++++. ..+. ....-++.-.+.+|+. ....+|++..||++.|||++
T Consensus 159 ~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~se-y~~~~~~a~t~D~gF~~S~s~----~~~~FAv~~Qdg~~~I~DVR 233 (344)
T KOG4532|consen 159 LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESE-YIENIYEAPTSDHGFYNSFSE----NDLQFAVVFQDGTCAIYDVR 233 (344)
T ss_pred cceeeeEEcCCCceEEEecCCCcceEEEeCCccc-eeeeeEecccCCCceeeeecc----CcceEEEEecCCcEEEEEec
Confidence 23445556666666 33333 33332 3333 3333445567889998 47899999999999999999
Q ss_pred CCceee---eeeeccCCCCeEEEEEecCC--CEEEEEECCCcEEEEEeCCCCceeEEE
Q psy13856 176 DYVTWT---PFIMNTFDDVVWNVSWSLTG--DILTVSCGDNSVSLWKENTDGAWQCIT 228 (271)
Q Consensus 176 ~~~~~~---~~~~~~h~~~v~~v~~~~~g--~~l~s~s~D~~v~iw~~~~~~~~~~~~ 228 (271)
...... ...-..|.++++.+.|++.| .+|+..-.-+.+++.|.++...-+.+.
T Consensus 234 ~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 234 NMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred ccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 754310 11234588999999999866 356666667889999999775544444
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.8e-05 Score=68.53 Aligned_cols=173 Identities=9% Similarity=-0.018 Sum_probs=95.8
Q ss_pred ccCCCCCCCEEEEccCC-C--eEEeccc----eeeeccccccccccceEEEEcCCCCeEEE-EeCCCc--EEEEEeecCC
Q psy13856 28 TESPLRIGHTLISCDTQ-A--HIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSAT-SSFHEA--AKHLGTVQSS 97 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d-~--~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s-~s~d~~--i~~~d~~~~~ 97 (271)
.....|||+.|+..+.+ + .|.+||+ ...+....+. ....+|+|||+.|+. .+.++. |+++|. .
T Consensus 222 ~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~----~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl---~ 294 (448)
T PRK04792 222 SPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGI----NGAPRFSPDGKKLALVLSKDGQPEIYVVDI---A 294 (448)
T ss_pred CceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCC----cCCeeECCCCCEEEEEEeCCCCeEEEEEEC---C
Confidence 34556799988776532 3 5777776 2223322333 457899999997764 566665 656676 4
Q ss_pred CCceeecc----ceeeEEEeeccceee--------eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEE
Q psy13856 98 SPACLQPK----YFKLTVYSTKLTRIL--------ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASC 163 (271)
Q Consensus 98 ~~~~~~~~----~~~~~~~~~~~~~l~--------~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~ 163 (271)
+++..+.. ......++.+++.++ ..+.+ ..++....+ .+. .......+|+| |+++|+..
T Consensus 295 tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~--g~~~~~~~~Sp----DG~~l~~~ 367 (448)
T PRK04792 295 TKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFE--GEQNLGGSITP----DGRSMIMV 367 (448)
T ss_pred CCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecC--CCCCcCeeECC----CCCEEEEE
Confidence 44333322 123455777777765 22333 223322222 122 22334578999 67777665
Q ss_pred eC-CC--eEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEEC-CCc--EEEEEe
Q psy13856 164 SQ-DR--KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG-DNS--VSLWKE 218 (271)
Q Consensus 164 ~~-dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-D~~--v~iw~~ 218 (271)
+. ++ .|.++|+.++.. ..+.... ......|+|+|+.|+..+. ++. +++++.
T Consensus 368 ~~~~g~~~I~~~dl~~g~~---~~lt~~~-~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 368 NRTNGKFNIARQDLETGAM---QVLTSTR-LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred EecCCceEEEEEECCCCCe---EEccCCC-CCCCceECCCCCEEEEEEecCCceEEEEEEC
Confidence 54 34 455567766653 2222221 1223479999998877665 343 555554
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.5e-06 Score=70.30 Aligned_cols=74 Identities=16% Similarity=0.249 Sum_probs=62.0
Q ss_pred CCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 140 h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
..+.|.+++++| +...++.|+.||.|.+||...+.. ......-....++|+|+|.++++|+..|.+.+||..
T Consensus 258 L~s~v~~ca~sp----~E~kLvlGC~DgSiiLyD~~~~~t----~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 258 LPSQVICCARSP----SEDKLVLGCEDGSIILYDTTRGVT----LLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred cCCcceEEecCc----ccceEEEEecCCeEEEEEcCCCee----eeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 678899999999 699999999999999999877542 222334457889999999999999999999999986
Q ss_pred CC
Q psy13856 220 TD 221 (271)
Q Consensus 220 ~~ 221 (271)
.+
T Consensus 330 Ls 331 (545)
T PF11768_consen 330 LS 331 (545)
T ss_pred cC
Confidence 43
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.1e-05 Score=60.53 Aligned_cols=147 Identities=12% Similarity=0.135 Sum_probs=86.5
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-------ceee----EEEeec-------cceee----eEEE-
Q psy13856 68 KAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-------YFKL----TVYSTK-------LTRIL----ILVR- 124 (271)
Q Consensus 68 ~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-------~~~~----~~~~~~-------~~~l~----~~v~- 124 (271)
+-++||||+..||.+...|+|+++|+.. ..+.... .... .++... ..+++ +.++
T Consensus 47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g---~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~S 123 (282)
T PF15492_consen 47 RKLAWSPDCTLLAYAESTGTIRVFDLMG---SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRS 123 (282)
T ss_pred eEEEECCCCcEEEEEcCCCeEEEEeccc---ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeee
Confidence 5799999999999999999999999841 1111100 0000 011100 11222 2222
Q ss_pred --E--eeCCceEEeEEe--cC-CCcceEEEEEccCCCCCCcEEEEEeC-CC----------eEEEEEcCCCceee-----
Q psy13856 125 --I--CGGDKWIEETKL--EN-HSDWVRDVAWAPSWGLSKCMIASCSQ-DR----------KVIIWTSNDYVTWT----- 181 (271)
Q Consensus 125 --i--~~~~~~~~~~~~--~~-h~~~v~~v~~~p~~~~~~~~l~s~~~-dg----------~i~iwd~~~~~~~~----- 181 (271)
| .....++..+++ .. +...|.++.++|. .++|+.|+. .. -+..|.+-++.++-
T Consensus 124 y~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~----h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~ 199 (282)
T PF15492_consen 124 YLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPK----HRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTS 199 (282)
T ss_pred EEEEcccCCcceeeEEEEecccCCCceeEEEEcCC----CCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccc
Confidence 2 112223333333 22 3678999999994 566655553 22 25667664432100
Q ss_pred -------------------eeee---ccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 182 -------------------PFIM---NTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 182 -------------------~~~~---~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
...+ ....+.|..+..+|||..||+...+|.|.+|++.+-
T Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 200 SEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred cCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 0001 112457999999999999999999999999998753
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-05 Score=69.84 Aligned_cols=159 Identities=12% Similarity=-0.000 Sum_probs=97.7
Q ss_pred eEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCC---CcEEEEEeecCCCCceeeccc----eeeEEEee
Q psy13856 46 HIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH---EAAKHLGTVQSSSPACLQPKY----FKLTVYST 114 (271)
Q Consensus 46 ~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d---~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~ 114 (271)
.|.++|. ...+..+... +...+|+|||+.|+..+.+ ..|.+|++ .++....... .....+++
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~----~~~p~wSpDG~~la~~s~~~~~~~l~~~~l---~~g~~~~l~~~~g~~~~~~~Sp 252 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREP----ILSPRWSPDGKRIAYVSFEQKRPRIFVQNL---DTGRREQITNFEGLNGAPAWSP 252 (430)
T ss_pred EEEEECCCCCCceEEecCCCc----eeeeeECCCCCEEEEEEcCCCCCEEEEEEC---CCCCEEEccCCCCCcCCeEECC
Confidence 4666666 3445556666 7899999999998876644 35778887 4444333221 12456778
Q ss_pred ccceee--------eEEEE-e-eCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC-CC--eEEEEEcCCCceee
Q psy13856 115 KLTRIL--------ILVRI-C-GGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ-DR--KVIIWTSNDYVTWT 181 (271)
Q Consensus 115 ~~~~l~--------~~v~i-~-~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~ 181 (271)
+++.++ ..+.+ . .++ ....+..+........|+| |+..|+..+. ++ .|.++++..++.
T Consensus 253 DG~~la~~~~~~g~~~Iy~~d~~~~---~~~~lt~~~~~~~~~~~sp----Dg~~i~f~s~~~g~~~iy~~d~~~g~~-- 323 (430)
T PRK00178 253 DGSKLAFVLSKDGNPEIYVMDLASR---QLSRVTNHPAIDTEPFWGK----DGRTLYFTSDRGGKPQIYKVNVNGGRA-- 323 (430)
T ss_pred CCCEEEEEEccCCCceEEEEECCCC---CeEEcccCCCCcCCeEECC----CCCEEEEEECCCCCceEEEEECCCCCE--
Confidence 888776 23444 2 233 2334444555566788999 6777665553 33 577777766653
Q ss_pred eeeeccCCCCeEEEEEecCCCEEEEEECC-C--cEEEEEeCCC
Q psy13856 182 PFIMNTFDDVVWNVSWSLTGDILTVSCGD-N--SVSLWKENTD 221 (271)
Q Consensus 182 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-~--~v~iw~~~~~ 221 (271)
..+...........|+|+|+.++..+.+ + .|.++|+.++
T Consensus 324 -~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg 365 (430)
T PRK00178 324 -ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRG 365 (430)
T ss_pred -EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCC
Confidence 2221111223457899999998877653 3 5778888754
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=9.1e-07 Score=70.16 Aligned_cols=135 Identities=11% Similarity=0.103 Sum_probs=95.2
Q ss_pred ccCCCCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEE-EEeCCCcEEEEEeecCCCCcee
Q psy13856 28 TESPLRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSA-TSSFHEAAKHLGTVQSSSPACL 102 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~-s~s~d~~i~~~d~~~~~~~~~~ 102 (271)
..+.+|+|+++|+++. -.+.+-|. +..+..--+. |.-+.|..|..+++ ..+.|+.|.+|++.
T Consensus 13 ~c~fSp~g~yiAs~~~-yrlviRd~~tlq~~qlf~cldk----i~yieW~ads~~ilC~~yk~~~vqvwsl~-------- 79 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSR-YRLVIRDSETLQLHQLFLCLDK----IVYIEWKADSCHILCVAYKDPKVQVWSLV-------- 79 (447)
T ss_pred ceeECCCCCeeeeeee-eEEEEeccchhhHHHHHHHHHH----hhheeeeccceeeeeeeeccceEEEEEee--------
Confidence 4455689999999998 47777776 1111222334 77788998877655 45788899999982
Q ss_pred eccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCC-cEEEEEeCCCeEEEEEcCCCceee
Q psy13856 103 QPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSK-CMIASCSQDRKVIIWTSNDYVTWT 181 (271)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~ 181 (271)
+. +-...+....+.+.+++|+| || ..+.+..-|-+|.+|.+.+...
T Consensus 80 -------------------------Qp--ew~ckIdeg~agls~~~WSP----dgrhiL~tseF~lriTVWSL~t~~~-- 126 (447)
T KOG4497|consen 80 -------------------------QP--EWYCKIDEGQAGLSSISWSP----DGRHILLTSEFDLRITVWSLNTQKG-- 126 (447)
T ss_pred -------------------------cc--eeEEEeccCCCcceeeeECC----CcceEeeeecceeEEEEEEecccee--
Confidence 22 23334555678899999999 57 5666677799999999988663
Q ss_pred eeeeccCCCCeEEEEEecCCCEEEEEEC
Q psy13856 182 PFIMNTFDDVVWNVSWSLTGDILTVSCG 209 (271)
Q Consensus 182 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 209 (271)
..+.--...+..++|+|||++.+..+.
T Consensus 127 -~~~~~pK~~~kg~~f~~dg~f~ai~sR 153 (447)
T KOG4497|consen 127 -YLLPHPKTNVKGYAFHPDGQFCAILSR 153 (447)
T ss_pred -EEecccccCceeEEECCCCceeeeeec
Confidence 223322345688999999999887764
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=1.5e-06 Score=69.36 Aligned_cols=177 Identities=10% Similarity=0.056 Sum_probs=111.7
Q ss_pred CCCCEEEEccCCCeEEeccc----------eeeecccccc--------ccccceEEEEcCCCC--eEEEEeCCCcEEEEE
Q psy13856 33 RIGHTLISCDTQAHIGIRST----------ISLLQGSVYL--------RRESNKAGALSPKLN--RSATSSFHEAAKHLG 92 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~----------~~~~~~h~~~--------~~~~i~~~~~s~~~~--~l~s~s~d~~i~~~d 92 (271)
..|.+|++|..+|.|.++.- ...++.|... ..+.|..++|.++++ .++....|.+|++|.
T Consensus 35 ~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWK 114 (433)
T KOG1354|consen 35 HYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWK 114 (433)
T ss_pred cccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeee
Confidence 58999999999999999976 2234444321 234477899998665 667778999999999
Q ss_pred eecCCCCceeeccceeeEEEeeccceeeeEEEE--ee----CCceEEeEEe-cCCCcceEEEEEccCCCCCCcEEEEEeC
Q psy13856 93 TVQSSSPACLQPKYFKLTVYSTKLTRILILVRI--CG----GDKWIEETKL-ENHSDWVRDVAWAPSWGLSKCMIASCSQ 165 (271)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i--~~----~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~~l~s~~~ 165 (271)
+.+ .+........+... +.. ....+++ .. .-...+.+.+ .+|.--|.+|+++. |++.++++.
T Consensus 115 i~e--r~~k~~~~~~~~~~---~~~-~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~Ns----D~Et~lSAD- 183 (433)
T KOG1354|consen 115 IRE--RGSKKEGYNLPEEG---PPG-TITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNS----DKETFLSAD- 183 (433)
T ss_pred eec--cccccccccccccC---CCC-ccceeeceeeccccceeeeeeeeeccccceeEeeeeeecC----ccceEeecc-
Confidence 842 11111100000000 000 0012222 00 0001233333 46788899999998 788888875
Q ss_pred CCeEEEEEcCCCc-eeeeeeeccC-----CCCeEEEEEecC-CCEEEEEECCCcEEEEEeCC
Q psy13856 166 DRKVIIWTSNDYV-TWTPFIMNTF-----DDVVWNVSWSLT-GDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 166 dg~i~iwd~~~~~-~~~~~~~~~h-----~~~v~~v~~~~~-g~~l~s~s~D~~v~iw~~~~ 220 (271)
|=+|.+|+++-.. .+.+.-+..+ ...|++..|+|. .+.++.++..|+|++.|++.
T Consensus 184 dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 184 DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence 7889999997543 2222223333 457899999996 57788888899999999984
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-07 Score=77.42 Aligned_cols=151 Identities=9% Similarity=0.071 Sum_probs=103.9
Q ss_pred CCCCCCEEEEccCCCeEEeccc------------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
...|.+-+++++.|.+|++|.+ .-+++.|+.. |.++.|-.+-+++++ .|+-|.+||-.-
T Consensus 743 AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~----i~~igfL~~lr~i~S--cD~giHlWDPFi--- 813 (1034)
T KOG4190|consen 743 AIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKP----IHDIGFLADLRSIAS--CDGGIHLWDPFI--- 813 (1034)
T ss_pred hcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCc----ccceeeeeccceeee--ccCcceeecccc---
Confidence 3456678999999999999998 4467889999 999999988877765 589999999731
Q ss_pred CceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCc-EEEEEeCCCeEEEEEcCCC
Q psy13856 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC-MIASCSQDRKVIIWTSNDY 177 (271)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~-~l~s~~~dg~i~iwd~~~~ 177 (271)
++.+.. ..-...++.+..+..-|+. +.. +++.|+...+++++|.+..
T Consensus 814 gr~Laq------------------------------~~dapk~~a~~~ikcl~nv--~~~iliAgcsaeSTVKl~DaRsc 861 (1034)
T KOG4190|consen 814 GRLLAQ------------------------------MEDAPKEGAGGNIKCLENV--DRHILIAGCSAESTVKLFDARSC 861 (1034)
T ss_pred cchhHh------------------------------hhcCcccCCCceeEecccC--cchheeeeccchhhheeeecccc
Confidence 111100 0000112333333333321 233 4455578999999999987
Q ss_pred ceee-eee--eccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 178 VTWT-PFI--MNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 178 ~~~~-~~~--~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
+... .+. ..+...-+++++..+.|+.++.+-..|.|.+.|.+++.
T Consensus 862 e~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~ 909 (1034)
T KOG4190|consen 862 EWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGK 909 (1034)
T ss_pred cceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCc
Confidence 6311 111 23344568999999999999999999999999999873
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.7e-06 Score=69.91 Aligned_cols=121 Identities=12% Similarity=0.073 Sum_probs=92.0
Q ss_pred CCEEEEccCCCeEEeccc------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecccee
Q psy13856 35 GHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFK 108 (271)
Q Consensus 35 g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~ 108 (271)
...||++..-+.+|+||. +..+.--... +.++...|+++.+++|..-+.+..||.+ .+.
T Consensus 216 ~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~----is~~~l~p~gn~Iy~gn~~g~l~~FD~r---~~k-------- 280 (412)
T KOG3881|consen 216 NYKFATITRYHQVRLYDTRHQRRPVAQFDFLENP----ISSTGLTPSGNFIYTGNTKGQLAKFDLR---GGK-------- 280 (412)
T ss_pred CceEEEEecceeEEEecCcccCcceeEeccccCc----ceeeeecCCCcEEEEecccchhheeccc---Cce--------
Confidence 567999999999999999 4455555566 8999999999999999999999999983 111
Q ss_pred eEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccC
Q psy13856 109 LTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTF 188 (271)
Q Consensus 109 ~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h 188 (271)
.....+.+-.+.|++|..+| .+.++++|+-|+.+||+|..+.... ...+ -
T Consensus 281 -----------------------l~g~~~kg~tGsirsih~hp----~~~~las~GLDRyvRIhD~ktrkll-~kvY--v 330 (412)
T KOG3881|consen 281 -----------------------LLGCGLKGITGSIRSIHCHP----THPVLASCGLDRYVRIHDIKTRKLL-HKVY--V 330 (412)
T ss_pred -----------------------eeccccCCccCCcceEEEcC----CCceEEeeccceeEEEeecccchhh-hhhh--h
Confidence 22233677889999999999 5899999999999999999984431 1111 1
Q ss_pred CCCeEEEEEecC
Q psy13856 189 DDVVWNVSWSLT 200 (271)
Q Consensus 189 ~~~v~~v~~~~~ 200 (271)
.+.++++-+.++
T Consensus 331 Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 331 KSRLTFILLRDD 342 (412)
T ss_pred hccccEEEecCC
Confidence 234566666543
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.6e-05 Score=67.59 Aligned_cols=159 Identities=11% Similarity=0.008 Sum_probs=92.4
Q ss_pred eEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeC-CC--cEEEEEeecCCCCceeecc---c-eeeEEEee
Q psy13856 46 HIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSF-HE--AAKHLGTVQSSSPACLQPK---Y-FKLTVYST 114 (271)
Q Consensus 46 ~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~-d~--~i~~~d~~~~~~~~~~~~~---~-~~~~~~~~ 114 (271)
.|.++|. .+.+..+... +.+..|+|||+.|+..+. ++ .|+++|+ .+++..... . .....+++
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~----~~~p~wSPDG~~La~~s~~~g~~~L~~~dl---~tg~~~~lt~~~g~~~~~~wSP 271 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEP----LMSPAWSPDGRKLAYVSFENRKAEIFVQDI---YTQVREKVTSFPGINGAPRFSP 271 (448)
T ss_pred EEEEEeCCCCCceEeecCCCc----ccCceECCCCCEEEEEEecCCCcEEEEEEC---CCCCeEEecCCCCCcCCeeECC
Confidence 4555565 3344455555 788999999998887654 33 4777787 444332221 1 13456778
Q ss_pred ccceee------e--EEEE-e-eCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC-CC--eEEEEEcCCCceee
Q psy13856 115 KLTRIL------I--LVRI-C-GGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ-DR--KVIIWTSNDYVTWT 181 (271)
Q Consensus 115 ~~~~l~------~--~v~i-~-~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~ 181 (271)
+++.++ + .+.+ . .++ ....+..+........|+| |+..|+..+. ++ .|.++|..+++.
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg---~~~~lt~~~~~~~~p~wSp----DG~~I~f~s~~~g~~~Iy~~dl~~g~~-- 342 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATK---ALTRITRHRAIDTEPSWHP----DGKSLIFTSERGGKPQIYRVNLASGKV-- 342 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCC---CeEECccCCCCccceEECC----CCCEEEEEECCCCCceEEEEECCCCCE--
Confidence 888776 2 2444 2 233 2334444555667889999 6777765543 34 466667766553
Q ss_pred eeeeccCCCCeEEEEEecCCCEEEEEEC-CCc--EEEEEeCCC
Q psy13856 182 PFIMNTFDDVVWNVSWSLTGDILTVSCG-DNS--VSLWKENTD 221 (271)
Q Consensus 182 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~-D~~--v~iw~~~~~ 221 (271)
..+..........+|+|+|++|+..+. ++. |.++|+.++
T Consensus 343 -~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g 384 (448)
T PRK04792 343 -SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETG 384 (448)
T ss_pred -EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 222112222345689999998877665 444 444565543
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=5.3e-07 Score=71.81 Aligned_cols=123 Identities=10% Similarity=0.096 Sum_probs=80.7
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEE
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRD 146 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~ 146 (271)
|.++.++.|+..++++ .|-.|.+|.+. .+.++... |.| ....+..-..-|++
T Consensus 167 iNSIS~NsD~Et~lSA-DdLRINLWnle--i~d~sFnI------------------VDI-------KP~nmEeLteVITs 218 (433)
T KOG1354|consen 167 INSISVNSDKETFLSA-DDLRINLWNLE--IIDQSFNI------------------VDI-------KPANMEELTEVITS 218 (433)
T ss_pred eeeeeecCccceEeec-cceeeeecccc--ccCCceeE------------------EEc-------cccCHHHHHHHHhh
Confidence 8888899888888776 78888899872 11111110 000 00111222456889
Q ss_pred EEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce--------------eeeeeeccCCCCeEEEEEecCCCEEEEEECCCc
Q psy13856 147 VAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT--------------WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNS 212 (271)
Q Consensus 147 v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~ 212 (271)
..|+|. .-+.|+-.+..|+|++-|++.... .....+.+--..|..+.|+++|+|+++-+. -+
T Consensus 219 aEFhp~---~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-lt 294 (433)
T KOG1354|consen 219 AEFHPH---HCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LT 294 (433)
T ss_pred hccCHh---HccEEEEecCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ce
Confidence 999997 567888888899999999995321 001111222357889999999999988754 48
Q ss_pred EEEEEeCCC
Q psy13856 213 VSLWKENTD 221 (271)
Q Consensus 213 v~iw~~~~~ 221 (271)
|++||++-.
T Consensus 295 vk~wD~nme 303 (433)
T KOG1354|consen 295 VKLWDLNME 303 (433)
T ss_pred eEEEecccc
Confidence 999999643
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00041 Score=58.12 Aligned_cols=194 Identities=9% Similarity=0.007 Sum_probs=114.8
Q ss_pred CCCCCCCEEEEcc-CCCeEEeccc-----eee---ecccc-------ccccccceEEEEcCCCCeEEEEe-CCCcEEEEE
Q psy13856 30 SPLRIGHTLISCD-TQAHIGIRST-----ISL---LQGSV-------YLRRESNKAGALSPKLNRSATSS-FHEAAKHLG 92 (271)
Q Consensus 30 ~~~~~g~~l~s~s-~d~~i~lwd~-----~~~---~~~h~-------~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~~~d 92 (271)
...+++++|+++. .+|.|.++++ +.. ...|. .....++.++.|+|+++++++.. ....|.+|+
T Consensus 93 ~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~ 172 (345)
T PF10282_consen 93 AVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYD 172 (345)
T ss_dssp EECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred EEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEE
Confidence 3447898877775 5799999988 111 11111 01122356899999999877753 344677888
Q ss_pred eecCCCCceee-----cc--ce-eeEEEeeccceee------eEEEE---e-eCCceEEeEEecCC------CcceEEEE
Q psy13856 93 TVQSSSPACLQ-----PK--YF-KLTVYSTKLTRIL------ILVRI---C-GGDKWIEETKLENH------SDWVRDVA 148 (271)
Q Consensus 93 ~~~~~~~~~~~-----~~--~~-~~~~~~~~~~~l~------~~v~i---~-~~~~~~~~~~~~~h------~~~v~~v~ 148 (271)
... ..+.... .. .. ....+..+++++. +.|.+ . ..+.++....+... ......|.
T Consensus 173 ~~~-~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ 251 (345)
T PF10282_consen 173 IDD-DTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIA 251 (345)
T ss_dssp E-T-TS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEE
T ss_pred EeC-CCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEE
Confidence 732 1111211 11 11 3456666666554 55555 2 34544555444322 12577899
Q ss_pred EccCCCCCCcEEEEE-eCCCeEEEEEcCC--CceeeeeeeccCCCCeEEEEEecCCCEEEEEEC-CCcEEEEEeC-CCCc
Q psy13856 149 WAPSWGLSKCMIASC-SQDRKVIIWTSND--YVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG-DNSVSLWKEN-TDGA 223 (271)
Q Consensus 149 ~~p~~~~~~~~l~s~-~~dg~i~iwd~~~--~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-D~~v~iw~~~-~~~~ 223 (271)
++| |+++|..+ ..+..|.+|++.. +.......+.......+.++++|+|++|+++.. ++.|.+|+++ ..+.
T Consensus 252 isp----dg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~ 327 (345)
T PF10282_consen 252 ISP----DGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGK 327 (345)
T ss_dssp E-T----TSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTE
T ss_pred Eec----CCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCc
Confidence 999 68776554 4578899999943 332223333333445789999999999998875 6799999986 3456
Q ss_pred eeEEE
Q psy13856 224 WQCIT 228 (271)
Q Consensus 224 ~~~~~ 228 (271)
+....
T Consensus 328 l~~~~ 332 (345)
T PF10282_consen 328 LTPVG 332 (345)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 65554
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.9e-07 Score=74.38 Aligned_cols=181 Identities=9% Similarity=-0.046 Sum_probs=127.4
Q ss_pred CCCEEEEccCCCeEEeccc--------eeeeccccccccccceEEEEcCCCCeEEEEeC-CCcEEEEEeecCCCCceeec
Q psy13856 34 IGHTLISCDTQAHIGIRST--------ISLLQGSVYLRRESNKAGALSPKLNRSATSSF-HEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~~~d~~~~~~~~~~~~ 104 (271)
-.+++.+++.||.+++|.- +..+..|-.. |.+++.+-++..+.|.+. |..++++|+.+......++.
T Consensus 19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~----I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL 94 (558)
T KOG0882|consen 19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGV----ILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKL 94 (558)
T ss_pred hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHH----HHhhhccccceeEeeccCcccceeEEEeeccchhhhccc
Confidence 4578999999999999987 4556778888 889999999999999887 99999999854333334444
Q ss_pred cceeeEEEeec--cc---eee------eEEEE-eeCCce-EEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEE
Q psy13856 105 KYFKLTVYSTK--LT---RIL------ILVRI-CGGDKW-IEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII 171 (271)
Q Consensus 105 ~~~~~~~~~~~--~~---~l~------~~v~i-~~~~~~-~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~i 171 (271)
.+.|..+.... +. .++ +.+.+ +..+.. +....-.-|..+|..+.++| .+..+.+....|.|.-
T Consensus 95 ~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~q----a~Ds~vSiD~~gmVEy 170 (558)
T KOG0882|consen 95 VDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQ----AGDSAVSIDISGMVEY 170 (558)
T ss_pred ccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeec----cccceeeccccceeEe
Confidence 44433332222 21 222 44444 222211 33334455899999999999 5899999999999999
Q ss_pred EEcCCC----c---eeeee------eeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 172 WTSNDY----V---TWTPF------IMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 172 wd~~~~----~---~~~~~------~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
|..... + .+..+ .+..-.....++.|+|+|..+.+-+.|..|+++++.++.
T Consensus 171 Ws~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGk 234 (558)
T KOG0882|consen 171 WSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGK 234 (558)
T ss_pred ecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccch
Confidence 998731 1 11011 111223567899999999999999999999999999873
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-05 Score=69.19 Aligned_cols=129 Identities=13% Similarity=0.110 Sum_probs=83.5
Q ss_pred eEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCC---CcEEEEEeecCCCCceeeccceeeEEEeeccce
Q psy13856 46 HIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH---EAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTR 118 (271)
Q Consensus 46 ~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (271)
.|.++|. ...+..+... +...+|+|||++|+.++.+ ..|++|++ .+++.
T Consensus 171 ~l~~~d~~g~~~~~l~~~~~~----~~~p~~Spdg~~la~~~~~~~~~~i~v~d~---~~g~~----------------- 226 (417)
T TIGR02800 171 ELQVADYDGANPQTITRSREP----ILSPAWSPDGQKLAYVSFESGKPEIYVQDL---ATGQR----------------- 226 (417)
T ss_pred eEEEEcCCCCCCEEeecCCCc----eecccCCCCCCEEEEEEcCCCCcEEEEEEC---CCCCE-----------------
Confidence 5777776 4445556666 7888999999998877644 36878887 22211
Q ss_pred eeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEE-EEeCCC--eEEEEEcCCCceeeeeeeccCCCCeEEE
Q psy13856 119 ILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIA-SCSQDR--KVIIWTSNDYVTWTPFIMNTFDDVVWNV 195 (271)
Q Consensus 119 l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~-s~~~dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~v 195 (271)
.. +..+...+.+++|+| |+..|+ +.+.++ .|++||+.++. ...+..+.......
T Consensus 227 -------------~~---~~~~~~~~~~~~~sp----Dg~~l~~~~~~~~~~~i~~~d~~~~~---~~~l~~~~~~~~~~ 283 (417)
T TIGR02800 227 -------------EK---VASFPGMNGAPAFSP----DGSKLAVSLSKDGNPDIYVMDLDGKQ---LTRLTNGPGIDTEP 283 (417)
T ss_pred -------------EE---eecCCCCccceEECC----CCCEEEEEECCCCCccEEEEECCCCC---EEECCCCCCCCCCE
Confidence 11 122344566789999 677654 455444 58888888765 33344454445567
Q ss_pred EEecCCCEEEEEEC-CC--cEEEEEeCCC
Q psy13856 196 SWSLTGDILTVSCG-DN--SVSLWKENTD 221 (271)
Q Consensus 196 ~~~~~g~~l~s~s~-D~--~v~iw~~~~~ 221 (271)
.|+|+|+.|+..+. ++ .|+++++.++
T Consensus 284 ~~s~dg~~l~~~s~~~g~~~iy~~d~~~~ 312 (417)
T TIGR02800 284 SWSPDGKSIAFTSDRGGSPQIYMMDADGG 312 (417)
T ss_pred EECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 89999998877664 33 5777776543
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.4e-07 Score=72.18 Aligned_cols=83 Identities=17% Similarity=0.191 Sum_probs=66.5
Q ss_pred eeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEE
Q psy13856 54 SLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIE 133 (271)
Q Consensus 54 ~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~ 133 (271)
..+-+|-.. +++++|+||+++++++..|..||+-+.. ..+-.
T Consensus 145 ~~~lGhvSm----l~dVavS~D~~~IitaDRDEkIRvs~yp----------------------------------a~f~I 186 (390)
T KOG3914|consen 145 EPILGHVSM----LLDVAVSPDDQFIITADRDEKIRVSRYP----------------------------------ATFVI 186 (390)
T ss_pred chhhhhhhh----hheeeecCCCCEEEEecCCceEEEEecC----------------------------------cccch
Confidence 344578888 8999999999999999999999988762 01011
Q ss_pred eEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce
Q psy13856 134 ETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT 179 (271)
Q Consensus 134 ~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 179 (271)
..-..||+.-|..++.-+ +..|+++|.|+++++||++++++
T Consensus 187 esfclGH~eFVS~isl~~-----~~~LlS~sGD~tlr~Wd~~sgk~ 227 (390)
T KOG3914|consen 187 ESFCLGHKEFVSTISLTD-----NYLLLSGSGDKTLRLWDITSGKL 227 (390)
T ss_pred hhhccccHhheeeeeecc-----CceeeecCCCCcEEEEecccCCc
Confidence 122358999999999987 46799999999999999999875
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.47 E-value=2.3e-06 Score=67.51 Aligned_cols=62 Identities=13% Similarity=-0.010 Sum_probs=45.1
Q ss_pred CCCCEEEEccCCCeEEeccc----------eeeecccccc--------ccccceEEEEcCCCC--eEEEEeCCCcEEEEE
Q psy13856 33 RIGHTLISCDTQAHIGIRST----------ISLLQGSVYL--------RRESNKAGALSPKLN--RSATSSFHEAAKHLG 92 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~----------~~~~~~h~~~--------~~~~i~~~~~s~~~~--~l~s~s~d~~i~~~d 92 (271)
..|.++++|..-|.|.++.- +..+++|... ..+.|..+.|..++. .++..+.|.+|++|.
T Consensus 36 ~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWK 115 (460)
T COG5170 36 ETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWK 115 (460)
T ss_pred cccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeee
Confidence 46889999999999999876 3345666432 133467788876543 566677999999999
Q ss_pred ee
Q psy13856 93 TV 94 (271)
Q Consensus 93 ~~ 94 (271)
+.
T Consensus 116 iy 117 (460)
T COG5170 116 IY 117 (460)
T ss_pred ee
Confidence 85
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=98.44 E-value=9.5e-05 Score=62.22 Aligned_cols=135 Identities=7% Similarity=-0.003 Sum_probs=78.6
Q ss_pred CCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEe-CCCcEEEEEeecCCCCceeec
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSS-FHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~~~d~~~~~~~~~~~~ 104 (271)
..+||+++.+++.||.|.++|+ +..++.-.. ..++++++||++++++. .++.+.++|. ++.+.++.
T Consensus 44 ~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-----~~~i~~s~DG~~~~v~n~~~~~v~v~D~---~tle~v~~ 115 (369)
T PF02239_consen 44 FSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-----PRGIAVSPDGKYVYVANYEPGTVSVIDA---ETLEPVKT 115 (369)
T ss_dssp -TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-----EEEEEE--TTTEEEEEEEETTEEEEEET---TT--EEEE
T ss_pred ecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-----cceEEEcCCCCEEEEEecCCCceeEecc---ccccceee
Confidence 3579999888999999999999 455544444 47899999999888664 7899999998 66666655
Q ss_pred cce---e--------eEEEe-eccc-eee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEE-e
Q psy13856 105 KYF---K--------LTVYS-TKLT-RIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASC-S 164 (271)
Q Consensus 105 ~~~---~--------~~~~~-~~~~-~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~-~ 164 (271)
... + ..+.. .... +++ +.+.+ .-.....................|+| +++|++.+ .
T Consensus 116 I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp----dgry~~va~~ 191 (369)
T PF02239_consen 116 IPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP----DGRYFLVAAN 191 (369)
T ss_dssp EE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T----TSSEEEEEEG
T ss_pred cccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCc----ccceeeeccc
Confidence 411 1 12222 2233 222 55555 21111022222222345667889999 67776554 4
Q ss_pred CCCeEEEEEcCCC
Q psy13856 165 QDRKVIIWTSNDY 177 (271)
Q Consensus 165 ~dg~i~iwd~~~~ 177 (271)
.+..+-++|..+.
T Consensus 192 ~sn~i~viD~~~~ 204 (369)
T PF02239_consen 192 GSNKIAVIDTKTG 204 (369)
T ss_dssp GGTEEEEEETTTT
T ss_pred ccceeEEEeeccc
Confidence 5667888887663
|
... |
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.3e-06 Score=76.18 Aligned_cols=148 Identities=15% Similarity=0.100 Sum_probs=105.0
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeC---------CCcEEEEEeecCCC
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSF---------HEAAKHLGTVQSSS 98 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~---------d~~i~~~d~~~~~~ 98 (271)
.|++++.+|...|+|.+-|. ++++..|++. |.+++. .|+.|+++|. |..+++||++ .
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~s----iSDfDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLR---m 255 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGS----ISDFDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLR---M 255 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCceeeeeeccccc----eeeeec--cCCeEEEeecccccccccccchhhhhhhh---h
Confidence 57889999999999999998 8899999998 766544 6899999974 4456777773 1
Q ss_pred CceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEE---cC
Q psy13856 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT---SN 175 (271)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd---~~ 175 (271)
.+.+. .+.-+.++ .-+.|.|. =...++.++..|.+.+-| +.
T Consensus 256 mral~--------------------------------PI~~~~~P-~flrf~Ps---l~t~~~V~S~sGq~q~vd~~~ls 299 (1118)
T KOG1275|consen 256 MRALS--------------------------------PIQFPYGP-QFLRFHPS---LTTRLAVTSQSGQFQFVDTATLS 299 (1118)
T ss_pred hhccC--------------------------------CcccccCc-hhhhhccc---ccceEEEEecccceeeccccccC
Confidence 11111 11112122 45778886 356888888999999998 44
Q ss_pred CCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeE
Q psy13856 176 DYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQC 226 (271)
Q Consensus 176 ~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~ 226 (271)
++.. ....+..-.+.+..++++++|..++.|..+|.|.+|.-+...++..
T Consensus 300 NP~~-~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~~~P~Fn~ 349 (1118)
T KOG1275|consen 300 NPPA-GVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADRPQPQFNE 349 (1118)
T ss_pred CCcc-ceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCCCCCccCC
Confidence 4321 1233334445689999999999999999999999998655544443
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.42 E-value=7.2e-07 Score=77.69 Aligned_cols=153 Identities=15% Similarity=0.135 Sum_probs=112.4
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc--------eeeeccccccccccceEEEEcCC-CCeEEEEeCCCcEEEEEee
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST--------ISLLQGSVYLRRESNKAGALSPK-LNRSATSSFHEAAKHLGTV 94 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~~-~~~l~s~s~d~~i~~~d~~ 94 (271)
+....+++.+...+-+.......-.+|++ --.+.+|+.. |+++.|+|. ...+++++.|..+..||.+
T Consensus 70 vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsra----itd~n~~~q~pdVlatcsvdt~vh~wd~r 145 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRA----ITDINFNPQHPDVLATCSVDTYVHAWDMR 145 (1081)
T ss_pred hcceecccCCCCceeEEecCcchhhhhhhhcCCccceEEEEecCccc----eeccccCCCCCcceeeccccccceeeecc
Confidence 33456667666665444444466678988 3356799999 999999984 4589999999999999984
Q ss_pred cCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEc
Q psy13856 95 QSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTS 174 (271)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~ 174 (271)
+. . .++.....-......|+|+-. ++..+|+.. .+.+++||.
T Consensus 146 ---Sp-----------------------------~--~p~ys~~~w~s~asqVkwnyk---~p~vlassh-g~~i~vwd~ 187 (1081)
T KOG0309|consen 146 ---SP-----------------------------H--RPFYSTSSWRSAASQVKWNYK---DPNVLASSH-GNDIFVWDL 187 (1081)
T ss_pred ---CC-----------------------------C--cceeeeecccccCceeeeccc---Ccchhhhcc-CCceEEEec
Confidence 11 1 233334334455678999976 677777654 567999999
Q ss_pred CCCceeeeeeeccCCCCeEEEEEecC-CCEEEEEECCCcEEEEEeC
Q psy13856 175 NDYVTWTPFIMNTFDDVVWNVSWSLT-GDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 175 ~~~~~~~~~~~~~h~~~v~~v~~~~~-g~~l~s~s~D~~v~iw~~~ 219 (271)
+.+... ...+.+|...|+.++|+.- ...+.+++.|++|+.|+..
T Consensus 188 r~gs~p-l~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~ 232 (1081)
T KOG0309|consen 188 RKGSTP-LCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYS 232 (1081)
T ss_pred cCCCcc-eEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccc
Confidence 987653 5677889999999999863 4567788899999999985
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=0.00011 Score=61.48 Aligned_cols=143 Identities=8% Similarity=0.074 Sum_probs=110.5
Q ss_pred CCCCEEEEccCCCeEEeccc---eeeeccccccccccceEEEEcCCCCeEEEEeCCC-cEEEEEeecCCCCceeecccee
Q psy13856 33 RIGHTLISCDTQAHIGIRST---ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHE-AAKHLGTVQSSSPACLQPKYFK 108 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~---~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~-~i~~~d~~~~~~~~~~~~~~~~ 108 (271)
.+|++++..|. |..-+.+. -..--+|.+. |.-..+..+++-++.|..|| .+-++|..
T Consensus 330 ~~Gd~ia~VSR-GkaFi~~~~~~~~iqv~~~~~----VrY~r~~~~~e~~vigt~dgD~l~iyd~~-------------- 390 (668)
T COG4946 330 VNGDYIALVSR-GKAFIMRPWDGYSIQVGKKGG----VRYRRIQVDPEGDVIGTNDGDKLGIYDKD-------------- 390 (668)
T ss_pred CCCcEEEEEec-CcEEEECCCCCeeEEcCCCCc----eEEEEEccCCcceEEeccCCceEEEEecC--------------
Confidence 47999999988 76666555 3344577777 88888888888889999998 78788861
Q ss_pred eEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeee-cc
Q psy13856 109 LTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIM-NT 187 (271)
Q Consensus 109 ~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~ 187 (271)
.+ ....+...-+.|.++..+| +|.+++.+.....+.+.|+.++.. ..+ ..
T Consensus 391 -------------------~~---e~kr~e~~lg~I~av~vs~----dGK~~vvaNdr~el~vididngnv---~~idkS 441 (668)
T COG4946 391 -------------------GG---EVKRIEKDLGNIEAVKVSP----DGKKVVVANDRFELWVIDIDNGNV---RLIDKS 441 (668)
T ss_pred -------------------Cc---eEEEeeCCccceEEEEEcC----CCcEEEEEcCceEEEEEEecCCCe---eEeccc
Confidence 22 3344555668899999999 799999999889999999999884 433 34
Q ss_pred CCCCeEEEEEecCCCEEEEEECCC----cEEEEEeCCCCc
Q psy13856 188 FDDVVWNVSWSLTGDILTVSCGDN----SVSLWKENTDGA 223 (271)
Q Consensus 188 h~~~v~~v~~~~~g~~l~s~s~D~----~v~iw~~~~~~~ 223 (271)
..+-|..+.|+|+++++|-+--+| .|+++|+..+..
T Consensus 442 ~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 442 EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeE
Confidence 456789999999999999886654 699999986533
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.5e-06 Score=65.64 Aligned_cols=151 Identities=13% Similarity=0.163 Sum_probs=94.5
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc--------eeeec-cccccccccceEEEEcCCCC-eEEEEeCCCcEEEEEeecC
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST--------ISLLQ-GSVYLRRESNKAGALSPKLN-RSATSSFHEAAKHLGTVQS 96 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~--------~~~~~-~h~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~~~d~~~~ 96 (271)
+.......++.+.++.- |+++.-|. +.++. .+... ..|.+++-+|..+ .+++|+.||.+-+||.+
T Consensus 136 as~~~~~~~~~i~s~~~-g~~n~~d~~~a~~~~p~~t~~~~~~~~--~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~r-- 210 (319)
T KOG4714|consen 136 ASRKICRHGNSILSGGC-GNWNAQDNFYANTLDPIKTLIPSKKAL--DAVTALCSHPAQQHLVCCGTDDGIVGLWDAR-- 210 (319)
T ss_pred cccceeecccEEecCCc-ceEeeccceeeeccccccccccccccc--ccchhhhCCcccccEEEEecCCCeEEEEEcc--
Confidence 44444456776666655 55555443 22221 11111 1177888888554 67788899999999983
Q ss_pred CCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC
Q psy13856 97 SSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 176 (271)
. . -.+...++.|+.+++.|-|+|. ++..|.++++||.+..||..+
T Consensus 211 -n------------------------------~-~~p~S~l~ahk~~i~eV~FHpk---~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 211 -N------------------------------V-AMPVSLLKAHKAEIWEVHFHPK---NPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -c------------------------------c-cchHHHHHHhhhhhhheeccCC---CchheeEecCCCcEEEEcCCC
Confidence 1 1 0344556789999999999998 899999999999999999874
Q ss_pred CceeeeeeeccC-------------------CCCeEEE-EEecCCCEEEEEECCCcEEEEE
Q psy13856 177 YVTWTPFIMNTF-------------------DDVVWNV-SWSLTGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 177 ~~~~~~~~~~~h-------------------~~~v~~v-~~~~~g~~l~s~s~D~~v~iw~ 217 (271)
...-.-..-..| .+...++ .|.-.|..|++|++-+.|++++
T Consensus 256 ~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 256 TFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred ceEEecCccccccccccCCcccceEeeeccccccceeeeeeeccCceEEeccccceEEEec
Confidence 211000000011 1111111 2333478899998888888875
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=98.39 E-value=3.3e-06 Score=73.56 Aligned_cols=134 Identities=16% Similarity=0.210 Sum_probs=97.7
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEE
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRD 146 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~ 146 (271)
..+++|+....+++.|+.||.+++..+.+..+....+ .. + ........+.+.||.+.|..
T Consensus 17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~--gl------------a------a~snLsmNQtLeGH~~sV~v 76 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKS--GL------------A------AASNLSMNQTLEGHNASVMV 76 (1189)
T ss_pred EEEEEEcccCCeEEeccccceeEEEEccccCCccccc--cc------------c------cccccchhhhhccCcceEEE
Confidence 5799999999999999999999998873211111000 00 0 01112445678899999999
Q ss_pred EEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCce
Q psy13856 147 VAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAW 224 (271)
Q Consensus 147 v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~ 224 (271)
+.|+.+ .+.|.+...+|.|.+|-+.++.-....+-....+.|.+++|+.+|..+...-.||.|.+=.++.+..|
T Consensus 77 vTWNe~----~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIw 150 (1189)
T KOG2041|consen 77 VTWNEN----NQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIW 150 (1189)
T ss_pred EEeccc----cccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceec
Confidence 999984 78899999999999999988764222233345678999999999999999999998877766654444
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.3e-06 Score=76.09 Aligned_cols=145 Identities=17% Similarity=0.154 Sum_probs=99.4
Q ss_pred CCCEEEEccCCCeEEeccc------eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCceeeccc
Q psy13856 34 IGHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPACLQPKY 106 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~ 106 (271)
+-..+++++.|-.+..||+ +..+..-... ...++|+. +++.+| .+...-+++||++.
T Consensus 126 ~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~----asqVkwnyk~p~vla-sshg~~i~vwd~r~----------- 189 (1081)
T KOG0309|consen 126 HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSA----ASQVKWNYKDPNVLA-SSHGNDIFVWDLRK----------- 189 (1081)
T ss_pred CCcceeeccccccceeeeccCCCcceeeeeccccc----CceeeecccCcchhh-hccCCceEEEeccC-----------
Confidence 4568999999999999999 3333322233 47889986 555554 45677888999852
Q ss_pred eeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc--------
Q psy13856 107 FKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV-------- 178 (271)
Q Consensus 107 ~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~-------- 178 (271)
.+ .++..+++|...|..+.|+.. -...+.+++.|++|+.||..+..
T Consensus 190 ---------------------gs--~pl~s~K~~vs~vn~~~fnr~---~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vt 243 (1081)
T KOG0309|consen 190 ---------------------GS--TPLCSLKGHVSSVNSIDFNRF---KYSEIMSSSNDGTVKFWDYSKSTTESKRTVT 243 (1081)
T ss_pred ---------------------CC--cceEEecccceeeehHHHhhh---hhhhhcccCCCCceeeecccccccccceecc
Confidence 22 455666677777777777754 35567777788888888775410
Q ss_pred ---------------------------------------------eeeeeeeccCCCCeEEEEEecCC----------CE
Q psy13856 179 ---------------------------------------------TWTPFIMNTFDDVVWNVSWSLTG----------DI 203 (271)
Q Consensus 179 ---------------------------------------------~~~~~~~~~h~~~v~~v~~~~~g----------~~ 203 (271)
...+..+.+|.+.|....|...+ -.
T Consensus 244 t~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQ 323 (1081)
T KOG0309|consen 244 TNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQ 323 (1081)
T ss_pred ccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCcccee
Confidence 01255667888777666665422 25
Q ss_pred EEEEECCCcEEEEEeCC
Q psy13856 204 LTVSCGDNSVSLWKENT 220 (271)
Q Consensus 204 l~s~s~D~~v~iw~~~~ 220 (271)
|++=+.|.++++|.+.+
T Consensus 324 LVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 324 LVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred EEEeecCCceEeeeccH
Confidence 88999999999999863
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=98.32 E-value=1.6e-05 Score=67.22 Aligned_cols=71 Identities=13% Similarity=0.246 Sum_probs=54.3
Q ss_pred CcceEEEEEccCCCCCCcEEEEEeC---CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEEC------CC
Q psy13856 141 SDWVRDVAWAPSWGLSKCMIASCSQ---DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG------DN 211 (271)
Q Consensus 141 ~~~v~~v~~~p~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~------D~ 211 (271)
+++=+++-|+| .|++++.++- -|.+-+||+.+.++ +..+..-. -+-+.|+|||++++++.. |+
T Consensus 311 egpRN~~~fnp----~g~ii~lAGFGNL~G~mEvwDv~n~K~--i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdN 382 (566)
T KOG2315|consen 311 EGPRNTAFFNP----HGNIILLAGFGNLPGDMEVWDVPNRKL--IAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDN 382 (566)
T ss_pred CCCccceEECC----CCCEEEEeecCCCCCceEEEeccchhh--ccccccCC--ceEEEEcCCCcEEEEEeccccEEecC
Confidence 45667899999 5888888775 47899999998554 34444333 234799999999998865 78
Q ss_pred cEEEEEeC
Q psy13856 212 SVSLWKEN 219 (271)
Q Consensus 212 ~v~iw~~~ 219 (271)
.++||+..
T Consensus 383 g~Kiwhyt 390 (566)
T KOG2315|consen 383 GIKIWHYT 390 (566)
T ss_pred CeEEEEec
Confidence 99999986
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00011 Score=69.88 Aligned_cols=167 Identities=10% Similarity=-0.007 Sum_probs=100.9
Q ss_pred CCCEEEEccCCCeEEeccc----eeeecccc---------c--cccccceEEEEcCCCC-eEEEEeCCCcEEEEEeecCC
Q psy13856 34 IGHTLISCDTQAHIGIRST----ISLLQGSV---------Y--LRRESNKAGALSPKLN-RSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~----~~~~~~h~---------~--~~~~~i~~~~~s~~~~-~l~s~s~d~~i~~~d~~~~~ 97 (271)
++.++++.+.++.|++||. +..+.+.. . ........++|+|+++ ..++-+.++.|++||. .
T Consensus 694 ~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~---~ 770 (1057)
T PLN02919 694 NEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDL---K 770 (1057)
T ss_pred CCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEEC---C
Confidence 5677888888899999997 22222110 0 0112256799999988 4556667799999997 4
Q ss_pred CCceeeccceeeEEEeeccceeeeEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC
Q psy13856 98 SPACLQPKYFKLTVYSTKLTRILILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 176 (271)
++....... ..... .. ..... ..++ .... ..-..-.++++++ ++.++++-..+++|++||..+
T Consensus 771 tg~~~~~~g-g~~~~---~~---~l~~fG~~dG--~g~~---~~l~~P~Gvavd~----dG~LYVADs~N~rIrviD~~t 834 (1057)
T PLN02919 771 TGGSRLLAG-GDPTF---SD---NLFKFGDHDG--VGSE---VLLQHPLGVLCAK----DGQIYVADSYNHKIKKLDPAT 834 (1057)
T ss_pred CCcEEEEEe-ccccc---Cc---ccccccCCCC--chhh---hhccCCceeeEeC----CCcEEEEECCCCEEEEEECCC
Confidence 332211000 00000 00 00000 0000 0000 0111234789999 688899999999999999987
Q ss_pred Cceeeeeeecc--------------CCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 177 YVTWTPFIMNT--------------FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 177 ~~~~~~~~~~~--------------h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
+.. ..+.+ .-.....++++++|+++++.+.++.|++||++++.
T Consensus 835 g~v---~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 835 KRV---TTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CeE---EEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 653 22111 11256789999999988888889999999998764
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.5e-05 Score=68.04 Aligned_cols=148 Identities=11% Similarity=0.094 Sum_probs=100.3
Q ss_pred CCCEEEEccCCCeEEeccc---eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeE
Q psy13856 34 IGHTLISCDTQAHIGIRST---ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLT 110 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~---~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~ 110 (271)
.++.++-|..+|.|++.+. ......|... ..+|.+++|||.||++.+....
T Consensus 48 ~~~~~~~GtH~g~v~~~~~~~~~~~~~~~s~~----------~~~Gey~asCS~DGkv~I~sl~---------------- 101 (846)
T KOG2066|consen 48 HDKFFALGTHRGAVYLTTCQGNPKTNFDHSSS----------ILEGEYVASCSDDGKVVIGSLF---------------- 101 (846)
T ss_pred hcceeeeccccceEEEEecCCccccccccccc----------ccCCceEEEecCCCcEEEeecc----------------
Confidence 5678999999999998877 2222222211 4578999999999999666652
Q ss_pred EEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCC-CCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCC
Q psy13856 111 VYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGL-SKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFD 189 (271)
Q Consensus 111 ~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~ 189 (271)
+. ...+.+. -..++.+|+++|.+.. ....+++|+.-| +.++..+--..+....+..-.
T Consensus 102 -----------------~~--~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~e 160 (846)
T KOG2066|consen 102 -----------------TD--DEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGE 160 (846)
T ss_pred -----------------CC--ccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCc
Confidence 11 1111111 3467889999995311 356899999888 777765543322122456667
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccc
Q psy13856 190 DVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 190 ~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
++|.++.|. |+++|-++++| |++||...+ +.+..++...
T Consensus 161 G~I~~i~W~--g~lIAWand~G-v~vyd~~~~---~~l~~i~~p~ 199 (846)
T KOG2066|consen 161 GPIHSIKWR--GNLIAWANDDG-VKVYDTPTR---QRLTNIPPPS 199 (846)
T ss_pred cceEEEEec--CcEEEEecCCC-cEEEecccc---ceeeccCCCC
Confidence 899999996 77999999887 999999877 5555555543
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00084 Score=54.33 Aligned_cols=180 Identities=8% Similarity=-0.007 Sum_probs=111.6
Q ss_pred CCeEEeccc--------eeeeccccccccccceEEEEcCCCCeEEEEeCC---CcEEEEEeecCCCCceeecc-----ce
Q psy13856 44 QAHIGIRST--------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH---EAAKHLGTVQSSSPACLQPK-----YF 107 (271)
Q Consensus 44 d~~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d---~~i~~~d~~~~~~~~~~~~~-----~~ 107 (271)
+.-|.+|++ ...+-.+.+. ++-++|+|+++.|.++..+ +.|--|.+. ...+...... ..
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~n----ptyl~~~~~~~~LY~v~~~~~~ggvaay~iD-~~~G~Lt~ln~~~~~g~ 89 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGN----PTYLAVNPDQRHLYVVNEPGEEGGVAAYRID-PDDGRLTFLNRQTLPGS 89 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCC----CceEEECCCCCEEEEEEecCCcCcEEEEEEc-CCCCeEEEeeccccCCC
Confidence 467888887 1122334444 7889999999999888654 666666652 1223333221 12
Q ss_pred eeEEEe--eccceee------eEEEE---eeCCceEEeEEecCCCcc----------eEEEEEccCCCCCCcEEEEEeC-
Q psy13856 108 KLTVYS--TKLTRIL------ILVRI---CGGDKWIEETKLENHSDW----------VRDVAWAPSWGLSKCMIASCSQ- 165 (271)
Q Consensus 108 ~~~~~~--~~~~~l~------~~v~i---~~~~~~~~~~~~~~h~~~----------v~~v~~~p~~~~~~~~l~s~~~- 165 (271)
+.+-.+ .+++++. +.|.+ ..++..........|.+. +....+.| ++++++++.-
T Consensus 90 ~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP----~~~~l~v~DLG 165 (346)
T COG2706 90 PPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP----DGRYLVVPDLG 165 (346)
T ss_pred CCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC----CCCEEEEeecC
Confidence 212222 2355555 66666 333533333333335554 78889999 6888887763
Q ss_pred CCeEEEEEcCCCceeeeeee-ccCCCCeEEEEEecCCCEEEEEEC-CCcEEEEEeCCC-CceeEEEEecc
Q psy13856 166 DRKVIIWTSNDYVTWTPFIM-NTFDDVVWNVSWSLTGDILTVSCG-DNSVSLWKENTD-GAWQCITEMGK 232 (271)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~-~~h~~~v~~v~~~~~g~~l~s~s~-D~~v~iw~~~~~-~~~~~~~~~~~ 232 (271)
--+|.+|++..+........ ..-...-+.+.|+|++++.....+ +++|.+|+.+.. +++++++++.-
T Consensus 166 ~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~t 235 (346)
T COG2706 166 TDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDT 235 (346)
T ss_pred CceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeecc
Confidence 34689999986653111111 122345688999999999888876 999999999874 67777766543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0017 Score=55.74 Aligned_cols=172 Identities=10% Similarity=-0.062 Sum_probs=95.4
Q ss_pred ccCCCCCCCE-EEEccC---CCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEE-EeCC--CcEEEEEeecC
Q psy13856 28 TESPLRIGHT-LISCDT---QAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSAT-SSFH--EAAKHLGTVQS 96 (271)
Q Consensus 28 ~~~~~~~g~~-l~s~s~---d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s-~s~d--~~i~~~d~~~~ 96 (271)
.....|||+. ++..+. +..|.++|+ ...+....+. ....+|+|||+.++. .+.+ ..|.+++.
T Consensus 192 ~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~----~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl--- 264 (419)
T PRK04043 192 FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGM----LVVSDVSKDGSKLLLTMAPKGQPDIYLYDT--- 264 (419)
T ss_pred eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCc----EEeeEECCCCCEEEEEEccCCCcEEEEEEC---
Confidence 4445578874 554333 356777777 3333334444 556789999986654 4434 45666676
Q ss_pred CCCceeecc---c-eeeEEEeeccceee--------eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEE
Q psy13856 97 SSPACLQPK---Y-FKLTVYSTKLTRIL--------ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIAS 162 (271)
Q Consensus 97 ~~~~~~~~~---~-~~~~~~~~~~~~l~--------~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s 162 (271)
..+...+.. . .....++++++.++ ..|.+ ...+..+ + +...... ...|+| ||.+|+-
T Consensus 265 ~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~--r-lt~~g~~--~~~~SP----DG~~Ia~ 335 (419)
T PRK04043 265 NTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVE--Q-VVFHGKN--NSSVST----YKNYIVY 335 (419)
T ss_pred CCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeE--e-CccCCCc--CceECC----CCCEEEE
Confidence 344333222 1 23456888888777 23444 3333211 1 2111111 248999 6887776
Q ss_pred EeCC---------CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC-Cc--EEEEEeC
Q psy13856 163 CSQD---------RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD-NS--VSLWKEN 219 (271)
Q Consensus 163 ~~~d---------g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-~~--v~iw~~~ 219 (271)
.+.. ..|.+.|+..+.. ..+... .......|+|||+.++..+.+ +. +.+.+++
T Consensus 336 ~~~~~~~~~~~~~~~I~v~d~~~g~~---~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~ 400 (419)
T PRK04043 336 SSRETNNEFGKNTFNLYLISTNSDYI---RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLN 400 (419)
T ss_pred EEcCCCcccCCCCcEEEEEECCCCCe---EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecC
Confidence 6653 3678888877663 333322 223357899999987776653 33 4444444
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.1e-05 Score=76.90 Aligned_cols=145 Identities=10% Similarity=0.096 Sum_probs=99.3
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc---ceeeEEEeeccceee-----eEEEE-eeCCceEEeEEe
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK---YFKLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKL 137 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~ 137 (271)
|.++.=+|..-+-++|+.||.+++|.--.+..--+.++. ......++..|..+. |.+.+ .... +.....
T Consensus 2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p--k~~~s~ 2288 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP--KPYTSW 2288 (2439)
T ss_pred eeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC--cceecc
Confidence 667777787778889999999999986211111122222 123334444454443 55555 2222 566667
Q ss_pred cCCCcceEEEEEccCCCCCCcEEEEEe---CCCeEEEEEcCCCce-eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcE
Q psy13856 138 ENHSDWVRDVAWAPSWGLSKCMIASCS---QDRKVIIWTSNDYVT-WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSV 213 (271)
Q Consensus 138 ~~h~~~v~~v~~~p~~~~~~~~l~s~~---~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v 213 (271)
+.|........|-- ..+++++ .++.+.+||...... +.+. ..|.+.++++++.|..+.|++|+.+|.|
T Consensus 2289 qchnk~~~Df~Fi~------s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~H~~gaT~l~~~P~~qllisggr~G~v 2360 (2439)
T KOG1064|consen 2289 QCHNKALSDFRFIG------SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TCHDGGATVLAYAPKHQLLISGGRKGEV 2360 (2439)
T ss_pred ccCCccccceeeee------hhhhccccCCCCCcccchhcccCcccceee--eecCCCceEEEEcCcceEEEecCCcCcE
Confidence 77888888888853 4666655 368899999865432 1122 6799999999999999999999999999
Q ss_pred EEEEeCCC
Q psy13856 214 SLWKENTD 221 (271)
Q Consensus 214 ~iw~~~~~ 221 (271)
++||++..
T Consensus 2361 ~l~D~rqr 2368 (2439)
T KOG1064|consen 2361 CLFDIRQR 2368 (2439)
T ss_pred EEeehHHH
Confidence 99999754
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=6.1e-06 Score=71.97 Aligned_cols=151 Identities=12% Similarity=0.082 Sum_probs=113.9
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc--------------------eeeeccccccccccceEEEEcCCCCeEEEEeCC
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST--------------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH 85 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~--------------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d 85 (271)
...........++++|+.||.+++-.+ .+++.+|... |.-+.|+...+.|-+...+
T Consensus 17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~s----V~vvTWNe~~QKLTtSDt~ 92 (1189)
T KOG2041|consen 17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNAS----VMVVTWNENNQKLTTSDTS 92 (1189)
T ss_pred EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcce----EEEEEeccccccccccCCC
Confidence 344555567789999999999999876 5678899999 9999999999999999999
Q ss_pred CcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC
Q psy13856 86 EAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ 165 (271)
Q Consensus 86 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~ 165 (271)
|-|.+|-+. .+.|.....-....+.|.+++|+. ||..|+..-.
T Consensus 93 GlIiVWmly---------------------------------kgsW~EEMiNnRnKSvV~SmsWn~----dG~kIcIvYe 135 (1189)
T KOG2041|consen 93 GLIIVWMLY---------------------------------KGSWCEEMINNRNKSVVVSMSWNL----DGTKICIVYE 135 (1189)
T ss_pred ceEEEEeee---------------------------------cccHHHHHhhCcCccEEEEEEEcC----CCcEEEEEEc
Confidence 999888873 122211111122456788999998 7999999999
Q ss_pred CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 166 DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
||.|.+=.+...+.| .+.+.+. -...+.|++|.+.++.+-..|.++++|-..
T Consensus 136 DGavIVGsvdGNRIw-gKeLkg~--~l~hv~ws~D~~~~Lf~~ange~hlydnqg 187 (1189)
T KOG2041|consen 136 DGAVIVGSVDGNRIW-GKELKGQ--LLAHVLWSEDLEQALFKKANGETHLYDNQG 187 (1189)
T ss_pred cCCEEEEeeccceec-chhcchh--eccceeecccHHHHHhhhcCCcEEEecccc
Confidence 999988877765544 2333322 234688999988888888899999999653
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=8e-06 Score=69.26 Aligned_cols=137 Identities=16% Similarity=0.172 Sum_probs=93.5
Q ss_pred eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceE
Q psy13856 53 ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWI 132 (271)
Q Consensus 53 ~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~ 132 (271)
+..+.+|+.. |+.++--.+.+.+++++.|.++++|.+. ..+..+. +-.
T Consensus 728 L~nf~GH~~~----iRai~AidNENSFiSASkDKTVKLWSik--~EgD~~~--------------------------tsa 775 (1034)
T KOG4190|consen 728 LCNFTGHQEK----IRAIAAIDNENSFISASKDKTVKLWSIK--PEGDEIG--------------------------TSA 775 (1034)
T ss_pred eecccCcHHH----hHHHHhcccccceeeccCCceEEEEEec--cccCccc--------------------------cce
Confidence 5667889888 8887766677889999999999999984 2222111 114
Q ss_pred EeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeec--cCCCCeEEEEEec--CCCEEEEE-
Q psy13856 133 EETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMN--TFDDVVWNVSWSL--TGDILTVS- 207 (271)
Q Consensus 133 ~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~v~~~~--~g~~l~s~- 207 (271)
+..++..|..+|.++-|-. +.++++++ ||-|.+||..-++.. ..+. .-.+++..+..-+ +..++..+
T Consensus 776 CQfTY~aHkk~i~~igfL~----~lr~i~Sc--D~giHlWDPFigr~L--aq~~dapk~~a~~~ikcl~nv~~~iliAgc 847 (1034)
T KOG4190|consen 776 CQFTYQAHKKPIHDIGFLA----DLRSIASC--DGGIHLWDPFIGRLL--AQMEDAPKEGAGGNIKCLENVDRHILIAGC 847 (1034)
T ss_pred eeeEhhhccCcccceeeee----ccceeeec--cCcceeecccccchh--HhhhcCcccCCCceeEecccCcchheeeec
Confidence 6677888999999999988 57788876 889999998877652 2111 1122333332223 34455554
Q ss_pred ECCCcEEEEEeCCCCceeEEEEe
Q psy13856 208 CGDNSVSLWKENTDGAWQCITEM 230 (271)
Q Consensus 208 s~D~~v~iw~~~~~~~~~~~~~~ 230 (271)
+...+|+++|.+.+ .|.+..++
T Consensus 848 saeSTVKl~DaRsc-e~~~E~kV 869 (1034)
T KOG4190|consen 848 SAESTVKLFDARSC-EWTCELKV 869 (1034)
T ss_pred cchhhheeeecccc-cceeeEEe
Confidence 66889999998865 55554444
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.00048 Score=57.77 Aligned_cols=129 Identities=10% Similarity=0.114 Sum_probs=94.0
Q ss_pred CCCEEEEccCCC-eEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecccee
Q psy13856 34 IGHTLISCDTQA-HIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFK 108 (271)
Q Consensus 34 ~g~~l~s~s~d~-~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~ 108 (271)
++.-++.|..|| .+-++|. ++.+...-+. |.++..+|+|++++.+.....+.+.|+ .+++
T Consensus 370 ~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~----I~av~vs~dGK~~vvaNdr~el~vidi---dngn-------- 434 (668)
T COG4946 370 DPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGN----IEAVKVSPDGKKVVVANDRFELWVIDI---DNGN-------- 434 (668)
T ss_pred CCcceEEeccCCceEEEEecCCceEEEeeCCccc----eEEEEEcCCCcEEEEEcCceEEEEEEe---cCCC--------
Confidence 444688888888 9999998 5677777778 999999999999999887777777777 2222
Q ss_pred eEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCC----eEEEEEcCCCceeeeee
Q psy13856 109 LTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDR----KVIIWTSNDYVTWTPFI 184 (271)
Q Consensus 109 ~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~ 184 (271)
....-+...+-|+...|+| ++++||-+--+| .|+++|+..++.+.+..
T Consensus 435 ------------------------v~~idkS~~~lItdf~~~~----nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 435 ------------------------VRLIDKSEYGLITDFDWHP----NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred ------------------------eeEecccccceeEEEEEcC----CceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 1111223457899999999 589998877665 58999999877543333
Q ss_pred eccCCCCeEEEEEecCCCEEEEEE
Q psy13856 185 MNTFDDVVWNVSWSLTGDILTVSC 208 (271)
Q Consensus 185 ~~~h~~~v~~v~~~~~g~~l~s~s 208 (271)
..+|. .+-+|.|++++|.--+
T Consensus 487 ~ta~D---fsPaFD~d~ryLYfLs 507 (668)
T COG4946 487 PTAYD---FSPAFDPDGRYLYFLS 507 (668)
T ss_pred Ccccc---cCcccCCCCcEEEEEe
Confidence 33443 4557889998876544
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.00064 Score=63.82 Aligned_cols=190 Identities=14% Similarity=0.100 Sum_probs=116.0
Q ss_pred ccccceecccCCCCCCCEEEEccCCCeEEeccc----e------------------------eeecccccc---------
Q psy13856 20 PTLEIETYTESPLRIGHTLISCDTQAHIGIRST----I------------------------SLLQGSVYL--------- 62 (271)
Q Consensus 20 ~~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~----~------------------------~~~~~h~~~--------- 62 (271)
...+..+...+++||+..|+....++++.+.+- + ..++|..+.
T Consensus 117 G~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p 196 (928)
T PF04762_consen 117 GSVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDP 196 (928)
T ss_pred EEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCC
Confidence 344455667777789999999998888888653 0 001111110
Q ss_pred c-----------cccceEEEEcCCCCeEEEEeC---C---CcEEEEEeecCCCCceeecc----ce-eeEEEeeccceee
Q psy13856 63 R-----------RESNKAGALSPKLNRSATSSF---H---EAAKHLGTVQSSSPACLQPK----YF-KLTVYSTKLTRIL 120 (271)
Q Consensus 63 ~-----------~~~i~~~~~s~~~~~l~s~s~---d---~~i~~~d~~~~~~~~~~~~~----~~-~~~~~~~~~~~l~ 120 (271)
+ ...-..+.|..||+++|+.+- + ..+|+|+ +.|....+. +. ....|-+.|..+|
T Consensus 197 ~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~----ReG~L~stSE~v~gLe~~l~WrPsG~lIA 272 (928)
T PF04762_consen 197 TVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYS----REGELQSTSEPVDGLEGALSWRPSGNLIA 272 (928)
T ss_pred CCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEEC----CCceEEeccccCCCccCCccCCCCCCEEE
Confidence 0 001235789999999998874 2 4678888 344443322 11 3445666788777
Q ss_pred --------eEEEE-eeCCceEEeEEec--CCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeec-cC
Q psy13856 121 --------ILVRI-CGGDKWIEETKLE--NHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMN-TF 188 (271)
Q Consensus 121 --------~~v~i-~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~h 188 (271)
..|.+ .++|--.....+. .....|..+.|++ |+..||....|. |.+|...+..-+..+.+. ..
T Consensus 273 ~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~----ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~ 347 (928)
T PF04762_consen 273 SSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNS----DSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS 347 (928)
T ss_pred EEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECC----CCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC
Confidence 12222 4444111112222 3456799999999 799999988666 999999886644333333 22
Q ss_pred CCCeEEEEEecC-CCEEEEEECCCcEEEEEe
Q psy13856 189 DDVVWNVSWSLT-GDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 189 ~~~v~~v~~~~~-g~~l~s~s~D~~v~iw~~ 218 (271)
...+..+.|+|. ...|...+.++.+..+++
T Consensus 348 ~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~ 378 (928)
T PF04762_consen 348 SESVNFVKWDPEKPLRLHVLTSNGQYEIYDF 378 (928)
T ss_pred CCCCCceEECCCCCCEEEEEecCCcEEEEEE
Confidence 334556999995 455777777677777666
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00063 Score=58.64 Aligned_cols=159 Identities=12% Similarity=0.008 Sum_probs=86.3
Q ss_pred ccCCCCCCCEEEEccC-CC----eEEeccc--------eeeeccccccccccceEEEEcCCCCeEEEEe-CCCcEEEEEe
Q psy13856 28 TESPLRIGHTLISCDT-QA----HIGIRST--------ISLLQGSVYLRRESNKAGALSPKLNRSATSS-FHEAAKHLGT 93 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~-d~----~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~~~d~ 93 (271)
.....|||+.|+..+. +| .+.+|++ ......+... ....+|+|||+.|+..+ .++..++|..
T Consensus 235 ~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~----~~~p~wSPDG~~Laf~s~~~g~~~ly~~ 310 (428)
T PRK01029 235 MPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGT----QGNPSFSPDGTRLVFVSNKDGRPRIYIM 310 (428)
T ss_pred ceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCC----cCCeEECCCCCEEEEEECCCCCceEEEE
Confidence 3445689987775542 23 3344553 1112122222 45789999999877665 4666556643
Q ss_pred ecCCCCc-e--eecc--ceeeEEEeeccceee--------eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCc
Q psy13856 94 VQSSSPA-C--LQPK--YFKLTVYSTKLTRIL--------ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158 (271)
Q Consensus 94 ~~~~~~~-~--~~~~--~~~~~~~~~~~~~l~--------~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 158 (271)
.-...+. . +... ......++++++.++ ..+.+ ...+. .+.+......+....|+| |++
T Consensus 311 ~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~---~~~Lt~~~~~~~~p~wSp----DG~ 383 (428)
T PRK01029 311 QIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR---DYQLTTSPENKESPSWAI----DSL 383 (428)
T ss_pred ECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC---eEEccCCCCCccceEECC----CCC
Confidence 2101111 1 1111 224556888888777 23444 23332 233333334567899999 677
Q ss_pred EEEEEeC---CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecC
Q psy13856 159 MIASCSQ---DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLT 200 (271)
Q Consensus 159 ~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~ 200 (271)
.|+..+. ...|.++|+..++. ..+....+.+...+|+|-
T Consensus 384 ~L~f~~~~~g~~~L~~vdl~~g~~---~~Lt~~~g~~~~p~Ws~~ 425 (428)
T PRK01029 384 HLVYSAGNSNESELYLISLITKKT---RKIVIGSGEKRFPSWGAF 425 (428)
T ss_pred EEEEEECCCCCceEEEEECCCCCE---EEeecCCCcccCceecCC
Confidence 7664332 35688888877663 333334445666788774
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00015 Score=64.17 Aligned_cols=139 Identities=15% Similarity=0.131 Sum_probs=91.7
Q ss_pred CCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCC-----CCeEEEEeCCCcEEEEEeecCCCCcee
Q psy13856 32 LRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPK-----LNRSATSSFHEAAKHLGTVQSSSPACL 102 (271)
Q Consensus 32 ~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~-----~~~l~s~s~d~~i~~~d~~~~~~~~~~ 102 (271)
.-.|.+++|||.||+|.+-.+ .........+ +.+++++|+ .+.+++|+.-| +.++.-. -
T Consensus 80 ~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rp----iksial~Pd~~~~~sk~fv~GG~ag-lvL~er~------w- 147 (846)
T KOG2066|consen 80 ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRP----IKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN------W- 147 (846)
T ss_pred ccCCceEEEecCCCcEEEeeccCCccceeEecCCc----ceeEEeccchhhhhhhheeecCcce-EEEehhh------h-
Confidence 457999999999999998877 1111222344 789999997 45889999888 6455431 0
Q ss_pred eccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeee
Q psy13856 103 QPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP 182 (271)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 182 (271)
-+. .....+..-.++|.++.|. |++||-++.+| +++||...... .
T Consensus 148 -------------------------lgn-k~~v~l~~~eG~I~~i~W~------g~lIAWand~G-v~vyd~~~~~~--l 192 (846)
T KOG2066|consen 148 -------------------------LGN-KDSVVLSEGEGPIHSIKWR------GNLIAWANDDG-VKVYDTPTRQR--L 192 (846)
T ss_pred -------------------------hcC-ccceeeecCccceEEEEec------CcEEEEecCCC-cEEEeccccce--e
Confidence 010 1111345567899999996 57999999888 89999987654 2
Q ss_pred eeec-cC-----CCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 183 FIMN-TF-----DDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 183 ~~~~-~h-----~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
..+. .+ ......+.|.++. .|+.|-.| +|+|..++
T Consensus 193 ~~i~~p~~~~R~e~fpphl~W~~~~-~LVIGW~d-~v~i~~I~ 233 (846)
T KOG2066|consen 193 TNIPPPSQSVRPELFPPHLHWQDED-RLVIGWGD-SVKICSIK 233 (846)
T ss_pred eccCCCCCCCCcccCCCceEecCCC-eEEEecCC-eEEEEEEe
Confidence 2222 22 1123467777664 45555444 68888887
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00068 Score=63.63 Aligned_cols=176 Identities=15% Similarity=0.124 Sum_probs=101.3
Q ss_pred EEeeceeEeeccccccceecccCCCCCCCEEEEccC---CCeEEeccc--e--ee--e--ccccccccccceEEEEcCCC
Q psy13856 8 LVSCDGLLMTLKPTLEIETYTESPLRIGHTLISCDT---QAHIGIRST--I--SL--L--QGSVYLRRESNKAGALSPKL 76 (271)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~s~s~---d~~i~lwd~--~--~~--~--~~h~~~~~~~i~~~~~s~~~ 76 (271)
+.+.+|.|.-..+..+...-..++-|.|++||+.-. ...|.+|.- + .. + ...... |..++|++|+
T Consensus 241 Vy~ReG~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~----v~~l~Wn~ds 316 (928)
T PF04762_consen 241 VYSREGELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEK----VIELAWNSDS 316 (928)
T ss_pred EECCCceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCce----eeEEEECCCC
Confidence 334455555544433333345556689999998864 456777765 1 11 1 122334 8899999999
Q ss_pred CeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCC-CcceEEEEEccCCCC
Q psy13856 77 NRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENH-SDWVRDVAWAPSWGL 155 (271)
Q Consensus 77 ~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~ 155 (271)
..||..-.|. |++|-. .+-.|...+++.-. ...+..+.|+|.
T Consensus 317 ~iLAv~~~~~-vqLWt~---------------------------------~NYHWYLKqei~~~~~~~~~~~~Wdpe--- 359 (928)
T PF04762_consen 317 EILAVWLEDR-VQLWTR---------------------------------SNYHWYLKQEIRFSSSESVNFVKWDPE--- 359 (928)
T ss_pred CEEEEEecCC-ceEEEe---------------------------------eCCEEEEEEEEEccCCCCCCceEECCC---
Confidence 9999877655 888876 12233333333311 122333555554
Q ss_pred CCcEEEEEeCCCeEEEE-------------------------------EcCCCceeeee--eeccCCCCeEEEEEecCCC
Q psy13856 156 SKCMIASCSQDRKVIIW-------------------------------TSNDYVTWTPF--IMNTFDDVVWNVSWSLTGD 202 (271)
Q Consensus 156 ~~~~l~s~~~dg~i~iw-------------------------------d~~~~~~~~~~--~~~~h~~~v~~v~~~~~g~ 202 (271)
+...|.....+|.+..+ .++.....++. ..-....+|.+++|++++.
T Consensus 360 ~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~ 439 (928)
T PF04762_consen 360 KPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNS 439 (928)
T ss_pred CCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCC
Confidence 34444444443444333 33222110011 1112357899999999988
Q ss_pred EEEEEECCCcEEEEEeCCCCce
Q psy13856 203 ILTVSCGDNSVSLWKENTDGAW 224 (271)
Q Consensus 203 ~l~s~s~D~~v~iw~~~~~~~~ 224 (271)
.+++-..||.|.+|.......+
T Consensus 440 ~~avl~~d~~l~~~~~~~~~~~ 461 (928)
T PF04762_consen 440 RFAVLTSDGSLSIYEWDLKNMW 461 (928)
T ss_pred eEEEEECCCCEEEEEecCCCcc
Confidence 8899999999999997655433
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0057 Score=51.27 Aligned_cols=189 Identities=13% Similarity=0.067 Sum_probs=113.0
Q ss_pred CCCCEEEEccC----CCeEEeccc---------eeeeccccccccccceEEEEcCCCCeEEEEe-CCCcEEEEEeecCCC
Q psy13856 33 RIGHTLISCDT----QAHIGIRST---------ISLLQGSVYLRRESNKAGALSPKLNRSATSS-FHEAAKHLGTVQSSS 98 (271)
Q Consensus 33 ~~g~~l~s~s~----d~~i~lwd~---------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~~~d~~~~~~ 98 (271)
+++++|.+... ++.|..|++ +......... ...++++|++++|+++. .++.+.++++. ..
T Consensus 46 ~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~----p~~i~~~~~g~~l~vany~~g~v~v~~l~--~~ 119 (345)
T PF10282_consen 46 PDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSS----PCHIAVDPDGRFLYVANYGGGSVSVFPLD--DD 119 (345)
T ss_dssp TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSC----EEEEEECTTSSEEEEEETTTTEEEEEEEC--TT
T ss_pred eCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCC----cEEEEEecCCCEEEEEEccCCeEEEEEcc--CC
Confidence 57887777765 578888877 1111212223 46789999999888876 68999999984 22
Q ss_pred Cceeec---c--------------cee-eEEEeeccceee------eEEEE--eeCC--ceEEeEEec-CCCcceEEEEE
Q psy13856 99 PACLQP---K--------------YFK-LTVYSTKLTRIL------ILVRI--CGGD--KWIEETKLE-NHSDWVRDVAW 149 (271)
Q Consensus 99 ~~~~~~---~--------------~~~-~~~~~~~~~~l~------~~v~i--~~~~--~~~~~~~~~-~h~~~v~~v~~ 149 (271)
+..... . .++ ...++++++++. ..|.+ .+.. .+.....+. .....-+.+.|
T Consensus 120 g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f 199 (345)
T PF10282_consen 120 GSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF 199 (345)
T ss_dssp SEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE
T ss_pred cccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE
Confidence 322221 1 111 344556666655 45555 2222 233333332 23455678999
Q ss_pred ccCCCCCCcEEEE-EeCCCeEEEEEcC--CCceeeeeeec----cC--CCCeEEEEEecCCCEEEEEEC-CCcEEEEEeC
Q psy13856 150 APSWGLSKCMIAS-CSQDRKVIIWTSN--DYVTWTPFIMN----TF--DDVVWNVSWSLTGDILTVSCG-DNSVSLWKEN 219 (271)
Q Consensus 150 ~p~~~~~~~~l~s-~~~dg~i~iwd~~--~~~~~~~~~~~----~h--~~~v~~v~~~~~g~~l~s~s~-D~~v~iw~~~ 219 (271)
+| ++.++.. .-.++.|.++++. .+......... +. ......+.++|||++|.++.. ++.|.+|+++
T Consensus 200 ~p----dg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 200 SP----DGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp -T----TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred cC----CcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 99 5776644 4558899999998 33211122221 11 125788999999999887764 6789999994
Q ss_pred -CCCceeEEEEec
Q psy13856 220 -TDGAWQCITEMG 231 (271)
Q Consensus 220 -~~~~~~~~~~~~ 231 (271)
..+....+..+.
T Consensus 276 ~~~g~l~~~~~~~ 288 (345)
T PF10282_consen 276 PATGTLTLVQTVP 288 (345)
T ss_dssp TTTTTEEEEEEEE
T ss_pred cCCCceEEEEEEe
Confidence 446666666553
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0071 Score=50.34 Aligned_cols=75 Identities=12% Similarity=0.171 Sum_probs=53.2
Q ss_pred EEEEccCCCCCCcEEEEEe----------CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCC-EEEEEE-CCCcE
Q psy13856 146 DVAWAPSWGLSKCMIASCS----------QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGD-ILTVSC-GDNSV 213 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s-~D~~v 213 (271)
-++++| ++..+.... ..+.|.++|..+.+. ...+. -...+..++++||++ .|++.. .++.|
T Consensus 252 ~ia~~~----dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kv--i~~i~-vG~~~~~iavS~Dgkp~lyvtn~~s~~V 324 (352)
T TIGR02658 252 QVAYHR----ARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKR--LRKIE-LGHEIDSINVSQDAKPLLYALSTGDKTL 324 (352)
T ss_pred eEEEcC----CCCEEEEEecCCccccccCCCCEEEEEECCCCeE--EEEEe-CCCceeeEEECCCCCeEEEEeCCCCCcE
Confidence 377887 455555422 125799999988775 33333 234789999999999 777666 57889
Q ss_pred EEEEeCCCCceeEEEEe
Q psy13856 214 SLWKENTDGAWQCITEM 230 (271)
Q Consensus 214 ~iw~~~~~~~~~~~~~~ 230 (271)
.++|..+. +.+.++
T Consensus 325 sViD~~t~---k~i~~i 338 (352)
T TIGR02658 325 YIFDAETG---KELSSV 338 (352)
T ss_pred EEEECcCC---eEEeee
Confidence 99999887 666665
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0015 Score=55.83 Aligned_cols=82 Identities=17% Similarity=0.243 Sum_probs=61.8
Q ss_pred CCcceEEEEEccCCCCCCcEEEE--EeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC---CcEE
Q psy13856 140 HSDWVRDVAWAPSWGLSKCMIAS--CSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD---NSVS 214 (271)
Q Consensus 140 h~~~v~~v~~~p~~~~~~~~l~s--~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D---~~v~ 214 (271)
..++|.++.|+| ++.-|+. |-.-..+.|+|++-. ..+.--+++=+++-|+|.|++++.++.+ |.+-
T Consensus 269 k~GPVhdv~W~~----s~~EF~VvyGfMPAkvtifnlr~~-----~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mE 339 (566)
T KOG2315|consen 269 KEGPVHDVTWSP----SGREFAVVYGFMPAKVTIFNLRGK-----PVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDME 339 (566)
T ss_pred CCCCceEEEECC----CCCEEEEEEecccceEEEEcCCCC-----EeEeCCCCCccceEECCCCCEEEEeecCCCCCceE
Confidence 578999999999 5766554 446788999998763 2333345677889999999999998875 7899
Q ss_pred EEEeCCCCceeEEEEeccc
Q psy13856 215 LWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 215 iw~~~~~~~~~~~~~~~~~ 233 (271)
+||+.+. +++.+++..
T Consensus 340 vwDv~n~---K~i~~~~a~ 355 (566)
T KOG2315|consen 340 VWDVPNR---KLIAKFKAA 355 (566)
T ss_pred EEeccch---hhccccccC
Confidence 9999764 555555443
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0055 Score=51.99 Aligned_cols=87 Identities=11% Similarity=0.152 Sum_probs=63.1
Q ss_pred CCcceEEEEEccCCCCCCcEEEEE--eCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC---CcEE
Q psy13856 140 HSDWVRDVAWAPSWGLSKCMIASC--SQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD---NSVS 214 (271)
Q Consensus 140 h~~~v~~v~~~p~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D---~~v~ 214 (271)
-.++|...+|.|. ++.|+.. -.+-.+.++|++.. ..+....+.=+.+.|+|.+++++.++.| |.+-
T Consensus 273 ~~~pVhdf~W~p~----S~~F~vi~g~~pa~~s~~~lr~N-----l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~ 343 (561)
T COG5354 273 LKDPVHDFTWEPL----SSRFAVISGYMPASVSVFDLRGN-----LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIE 343 (561)
T ss_pred ccccceeeeeccc----CCceeEEecccccceeecccccc-----eEEecCCcccccccccCcccEEEEecCCccccceE
Confidence 3578899999994 6655554 47889999999873 2233334555778899999999998876 5799
Q ss_pred EEEeCCCCceeEEEEecccchhh
Q psy13856 215 LWKENTDGAWQCITEMGKTSEQR 237 (271)
Q Consensus 215 iw~~~~~~~~~~~~~~~~~~~~~ 237 (271)
+|+.. +++.++..+.+...+.
T Consensus 344 i~~~~--~rf~~~~~~~~~n~s~ 364 (561)
T COG5354 344 IFDPA--GRFKVAGAFNGLNTSY 364 (561)
T ss_pred EeccC--CceEEEEEeecCCceE
Confidence 99965 5677887776655443
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0014 Score=56.12 Aligned_cols=85 Identities=11% Similarity=-0.081 Sum_probs=59.2
Q ss_pred CCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeC-----------CCcEEEEEeecC
Q psy13856 32 LRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSF-----------HEAAKHLGTVQS 96 (271)
Q Consensus 32 ~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~-----------d~~i~~~d~~~~ 96 (271)
+|-|.+|+|-.. .-|.+|-- ...-..|.+ |.-+.|||..++|+|-|. ...+.+||+
T Consensus 219 SP~GTYL~t~Hk-~GI~lWGG~~f~r~~RF~Hp~-----Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI--- 289 (698)
T KOG2314|consen 219 SPKGTYLVTFHK-QGIALWGGESFDRIQRFYHPG-----VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI--- 289 (698)
T ss_pred cCCceEEEEEec-cceeeecCccHHHHHhccCCC-----ceeeecCCccceEEEecCCccccCcccCCCceEEEEEc---
Confidence 468999999988 66888976 112235665 689999999999998762 256889999
Q ss_pred CCCceeecc--------ceeeEEEeeccceee----eEEEE
Q psy13856 97 SSPACLQPK--------YFKLTVYSTKLTRIL----ILVRI 125 (271)
Q Consensus 97 ~~~~~~~~~--------~~~~~~~~~~~~~l~----~~v~i 125 (271)
.+|...+.+ .-+.--|+.+.+++| ..+.|
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~sisI 330 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGNSISI 330 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccceEEE
Confidence 445444333 125566777788888 55555
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0022 Score=50.09 Aligned_cols=158 Identities=6% Similarity=-0.064 Sum_probs=98.8
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-------ee-eeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCC
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-------IS-LLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~-~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
.......+|+.++++.+....|-+|.+ .. .....++. =.+..|+.....+|++++||++.+||++...
T Consensus 161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~----gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~ 236 (344)
T KOG4532|consen 161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDH----GFYNSFSENDLQFAVVFQDGTCAIYDVRNMA 236 (344)
T ss_pred eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCC----ceeeeeccCcceEEEEecCCcEEEEEecccc
Confidence 344445579999999999999999988 22 12222233 5788999999999999999999999985211
Q ss_pred CCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC
Q psy13856 98 SPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY 177 (271)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 177 (271)
+. +. ....+-..|.+.+..+.|+|.+ --++|.-.=.-+.+.+.|+++.
T Consensus 237 tp--m~----------------------------~~sstrp~hnGa~R~c~Fsl~g--~lDLLf~sEhfs~~hv~D~R~~ 284 (344)
T KOG4532|consen 237 TP--MA----------------------------EISSTRPHHNGAFRVCRFSLYG--LLDLLFISEHFSRVHVVDTRNY 284 (344)
T ss_pred cc--hh----------------------------hhcccCCCCCCceEEEEecCCC--cceEEEEecCcceEEEEEcccC
Confidence 11 11 0111112488999999999831 1234444334578999999997
Q ss_pred ceeeeee-----eccCC-CCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 178 VTWTPFI-----MNTFD-DVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 178 ~~~~~~~-----~~~h~-~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
...+... ...|. +.+..-.|+.++.-+.+.+.+ .+.=|++..
T Consensus 285 ~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~s 332 (344)
T KOG4532|consen 285 VNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILS 332 (344)
T ss_pred ceeeEEecCccccccccccccccccccCCCcccccccch-hhheeeccc
Confidence 6522222 12233 336677777776655555544 244455443
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.1e-05 Score=60.58 Aligned_cols=133 Identities=12% Similarity=0.118 Sum_probs=87.8
Q ss_pred eeeeccccccccccceEEEEcCCCC-eEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCce
Q psy13856 53 ISLLQGSVYLRRESNKAGALSPKLN-RSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKW 131 (271)
Q Consensus 53 ~~~~~~h~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~ 131 (271)
.+.+..|... |.+++|||..+ ++..++.+.+|++.|+. +.
T Consensus 186 sq~lp~~g~~----IrdlafSp~~~GLl~~asl~nkiki~dle---------------------------------t~-- 226 (463)
T KOG1645|consen 186 SQILPGEGSF----IRDLAFSPFNEGLLGLASLGNKIKIMDLE---------------------------------TS-- 226 (463)
T ss_pred hhcccccchh----hhhhccCccccceeeeeccCceEEEEecc---------------------------------cc--
Confidence 4556677778 99999999877 78889999999999982 12
Q ss_pred EEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeecc--CCCCeEEEEEe------cCCCE
Q psy13856 132 IEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT--FDDVVWNVSWS------LTGDI 203 (271)
Q Consensus 132 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~v~~~------~~g~~ 203 (271)
..+..+..| ..+++++|+-+ +.++|..|-..|.|.+||++..+.. ...+.+ -..+|..++.- +.|.+
T Consensus 227 ~~vssy~a~-~~~wSC~wDld---e~h~IYaGl~nG~VlvyD~R~~~~~-~~e~~a~~t~~pv~~i~~~~~n~~f~~ggl 301 (463)
T KOG1645|consen 227 CVVSSYIAY-NQIWSCCWDLD---ERHVIYAGLQNGMVLVYDMRQPEGP-LMELVANVTINPVHKIAPVQPNKIFTSGGL 301 (463)
T ss_pred eeeeheecc-CCceeeeeccC---CcceeEEeccCceEEEEEccCCCch-HhhhhhhhccCcceeecccCccccccccce
Confidence 334444545 88999999987 7889999999999999999987642 122211 12344433322 23555
Q ss_pred EEEEECCCcEEEEEeCC-CCceeEEEEec
Q psy13856 204 LTVSCGDNSVSLWKENT-DGAWQCITEMG 231 (271)
Q Consensus 204 l~s~s~D~~v~iw~~~~-~~~~~~~~~~~ 231 (271)
|+.++.+ +..|++.. .+.|.++.+++
T Consensus 302 Lv~~lt~--l~f~ei~~s~~~~p~vlele 328 (463)
T KOG1645|consen 302 LVFALTV--LQFYEIVFSAECLPCVLELE 328 (463)
T ss_pred EEeeehh--hhhhhhhccccCCCcccccC
Confidence 5555543 45566542 23344444444
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.80 E-value=7e-05 Score=64.19 Aligned_cols=66 Identities=12% Similarity=0.035 Sum_probs=54.4
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc---eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEe
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST---ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGT 93 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~---~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~ 93 (271)
..+.+....|+.+.++.|+.||.|++||. ...+....-. +..++|+|+|..+++|+..|.+++||.
T Consensus 260 s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~----P~~iaWHp~gai~~V~s~qGelQ~FD~ 328 (545)
T PF11768_consen 260 SQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFI----PTLIAWHPDGAIFVVGSEQGELQCFDM 328 (545)
T ss_pred CcceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeeccc----ceEEEEcCCCcEEEEEcCCceEEEEEe
Confidence 34555666688999999999999999998 3333344444 789999999999999999999999997
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.79 E-value=9.5e-05 Score=39.21 Aligned_cols=38 Identities=29% Similarity=0.449 Sum_probs=33.1
Q ss_pred EEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEE
Q psy13856 132 IEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT 173 (271)
Q Consensus 132 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd 173 (271)
.+...+..|...|.++.|+| .+.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP----DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC----CCCEEEEecCCCeEEEcC
Confidence 45667778999999999999 478999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00021 Score=57.40 Aligned_cols=109 Identities=10% Similarity=-0.008 Sum_probs=76.8
Q ss_pred CCCCCCEEEEccCCCeEEeccce---------eeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 31 PLRIGHTLISCDTQAHIGIRSTI---------SLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~~---------~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
....+.++..|+..|.|-..|+. ...--|... |+++..-. ++++|++.+.+|+|++||.+ .-+
T Consensus 260 f~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ss----vtslq~Lq~s~q~LmaS~M~gkikLyD~R---~~K 332 (425)
T KOG2695|consen 260 FAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSS----VTSLQILQFSQQKLMASDMTGKIKLYDLR---ATK 332 (425)
T ss_pred hcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcc----hhhhhhhccccceEeeccCcCceeEeeeh---hhh
Confidence 33467899999999999999991 122235555 77766554 67889999999999999983 111
Q ss_pred eeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEE--EccCCCCCCcEEEEEeCCCeEEEEEcCCCc
Q psy13856 101 CLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVA--WAPSWGLSKCMIASCSQDRKVIIWTSNDYV 178 (271)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~--~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 178 (271)
| + ..++.++||-..-.-+- ..+ ....+++++.|-..+||.++.+.
T Consensus 333 ~---------------------------~--~~V~qYeGHvN~~a~l~~~v~~----eeg~I~s~GdDcytRiWsl~~gh 379 (425)
T KOG2695|consen 333 C---------------------------K--KSVMQYEGHVNLSAYLPAHVKE----EEGSIFSVGDDCYTRIWSLDSGH 379 (425)
T ss_pred c---------------------------c--cceeeeeccccccccccccccc----ccceEEEccCeeEEEEEecccCc
Confidence 1 1 23667778855433333 334 35678889999999999999876
Q ss_pred e
Q psy13856 179 T 179 (271)
Q Consensus 179 ~ 179 (271)
.
T Consensus 380 L 380 (425)
T KOG2695|consen 380 L 380 (425)
T ss_pred e
Confidence 4
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00018 Score=62.10 Aligned_cols=75 Identities=19% Similarity=0.351 Sum_probs=62.3
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeE-EEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVW-NVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~-~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
..+..+.|+|. ..+||.+..+|.+.+....-.+ +..+.-+...+. +++|.|||+.||.|-.||+|++.|...
T Consensus 21 ~~i~~~ewnP~----~dLiA~~t~~gelli~R~n~qR---lwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 21 INIKRIEWNPK----MDLIATRTEKGELLIHRLNWQR---LWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred cceEEEEEcCc----cchhheeccCCcEEEEEeccce---eEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccC
Confidence 45778999994 8999999999999999887545 444554555665 999999999999999999999999987
Q ss_pred CCc
Q psy13856 221 DGA 223 (271)
Q Consensus 221 ~~~ 223 (271)
+..
T Consensus 94 ~~~ 96 (665)
T KOG4640|consen 94 GGR 96 (665)
T ss_pred CCc
Confidence 653
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00011 Score=39.00 Aligned_cols=36 Identities=22% Similarity=0.400 Sum_probs=31.9
Q ss_pred eeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q psy13856 182 PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 182 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~ 217 (271)
...+..|...|.++.|++++.++++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 445667888999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0023 Score=56.96 Aligned_cols=143 Identities=10% Similarity=0.089 Sum_probs=101.6
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCC------------CeEEEEeCCCcEEEEEeecC
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKL------------NRSATSSFHEAAKHLGTVQS 96 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~------------~~l~s~s~d~~i~~~d~~~~ 96 (271)
.+-+||-|+. ..|.+-|. ++.+..|... |..+.|.|.. -.||++...|.|.+||..
T Consensus 25 ~~GLiAygsh-slV~VVDs~s~q~iqsie~h~s~----V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~-- 97 (1062)
T KOG1912|consen 25 PSGLIAYGSH-SLVSVVDSRSLQLIQSIELHQSA----VTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFV-- 97 (1062)
T ss_pred ccceEEEecC-ceEEEEehhhhhhhhccccCccc----eeEEEeccCCCchhccCccccceeEEeccccCcEEEEEeh--
Confidence 4556777777 77777776 7888899988 9999998732 156777788999899972
Q ss_pred CCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC
Q psy13856 97 SSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 176 (271)
. + ..+..+..|.+++..++|-|..+.....+++-....++.+|+..+
T Consensus 98 -~------------------------------~--s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdt 144 (1062)
T KOG1912|consen 98 -L------------------------------A--SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDT 144 (1062)
T ss_pred -h------------------------------h--hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccC
Confidence 1 1 223345567888899999875432346788888889999999999
Q ss_pred CceeeeeeeccCCCCeEEEEEec-CCCEEEEEECCCcEEEEEe
Q psy13856 177 YVTWTPFIMNTFDDVVWNVSWSL-TGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 177 ~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~v~iw~~ 218 (271)
++. .-..........|+.+.| |.+.+..-+..|.+.+-+.
T Consensus 145 G~k--~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~ 185 (1062)
T KOG1912|consen 145 GEK--FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKD 185 (1062)
T ss_pred Cce--eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEec
Confidence 875 333333345667788888 5666666666777777765
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.02 Score=51.81 Aligned_cols=179 Identities=9% Similarity=0.066 Sum_probs=107.9
Q ss_pred eeEEeeceeEeeccccccc----eecccC-----CCCCC-CEEEEccCCCe-----EEeccc-----------e--eeec
Q psy13856 6 WLLVSCDGLLMTLKPTLEI----ETYTES-----PLRIG-HTLISCDTQAH-----IGIRST-----------I--SLLQ 57 (271)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~----~~~~~~-----~~~~g-~~l~s~s~d~~-----i~lwd~-----------~--~~~~ 57 (271)
..+-+++|.+.-+...... -.|..+ ..-++ .+|++-+.|+. +++|++ + ..+.
T Consensus 38 vvigt~~G~V~~Ln~s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~ 117 (933)
T KOG2114|consen 38 VVIGTADGRVVILNSSFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIF 117 (933)
T ss_pred EEEeeccccEEEecccceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeee
Confidence 3344667877776544333 233333 12344 47888777654 899998 1 1223
Q ss_pred ccccc-ccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEE
Q psy13856 58 GSVYL-RRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETK 136 (271)
Q Consensus 58 ~h~~~-~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~ 136 (271)
.|..+ ....+.+++.+.+-+.++.|-.+|.|.++.- ...+ +.+ ....-
T Consensus 118 ~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~G------Di~R-----------------------Drg--sr~~~ 166 (933)
T KOG2114|consen 118 TIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKG------DILR-----------------------DRG--SRQDY 166 (933)
T ss_pred ccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcC------cchh-----------------------ccc--cceee
Confidence 32222 2333678899988889999999999966642 1111 111 11111
Q ss_pred ecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q psy13856 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216 (271)
Q Consensus 137 ~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw 216 (271)
......+|+++.+.. ++...+-...-..|.+|.+.... .....+..|...++|..|++....+++++ +..+.+|
T Consensus 167 ~~~~~~pITgL~~~~----d~~s~lFv~Tt~~V~~y~l~gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY 240 (933)
T KOG2114|consen 167 SHRGKEPITGLALRS----DGKSVLFVATTEQVMLYSLSGRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFY 240 (933)
T ss_pred eccCCCCceeeEEec----CCceeEEEEecceeEEEEecCCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEE
Confidence 122357899999987 45542222234579999988544 22455778888999999988655455554 4569999
Q ss_pred EeCCC
Q psy13856 217 KENTD 221 (271)
Q Consensus 217 ~~~~~ 221 (271)
+.+..
T Consensus 241 ~sd~~ 245 (933)
T KOG2114|consen 241 DSDGR 245 (933)
T ss_pred cCCCc
Confidence 87644
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0085 Score=57.46 Aligned_cols=130 Identities=6% Similarity=-0.102 Sum_probs=78.1
Q ss_pred ceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceE
Q psy13856 67 NKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVR 145 (271)
Q Consensus 67 i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~ 145 (271)
..+++|+| ++..+++.+.++.|++|+. ..+...... .++... ...+ .. .....-....
T Consensus 685 P~gVa~dp~~g~LyVad~~~~~I~v~d~---~~g~v~~~~--------G~G~~~------~~~g--~~--~~~~~~~~P~ 743 (1057)
T PLN02919 685 PWDVCFEPVNEKVYIAMAGQHQIWEYNI---SDGVTRVFS--------GDGYER------NLNG--SS--GTSTSFAQPS 743 (1057)
T ss_pred CeEEEEecCCCeEEEEECCCCeEEEEEC---CCCeEEEEe--------cCCccc------cCCC--Cc--cccccccCcc
Confidence 46899999 5666777788899999997 333221100 000000 0000 00 0001123456
Q ss_pred EEEEccCCCCCCc-EEEEEeCCCeEEEEEcCCCceeeee-----------eeccC--------CCCeEEEEEecCCCEEE
Q psy13856 146 DVAWAPSWGLSKC-MIASCSQDRKVIIWTSNDYVTWTPF-----------IMNTF--------DDVVWNVSWSLTGDILT 205 (271)
Q Consensus 146 ~v~~~p~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~-----------~~~~h--------~~~v~~v~~~~~g~~l~ 205 (271)
.|+++| ++. ++++-+.++.|++||+.++...... .+... -.....++++++|.+++
T Consensus 744 GIavsp----dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYV 819 (1057)
T PLN02919 744 GISLSP----DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYV 819 (1057)
T ss_pred EEEEeC----CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEE
Confidence 799999 565 6666777899999999865421000 00000 11346889999999888
Q ss_pred EEECCCcEEEEEeCCC
Q psy13856 206 VSCGDNSVSLWKENTD 221 (271)
Q Consensus 206 s~s~D~~v~iw~~~~~ 221 (271)
+-+.++.|++||..++
T Consensus 820 ADs~N~rIrviD~~tg 835 (1057)
T PLN02919 820 ADSYNHKIKKLDPATK 835 (1057)
T ss_pred EECCCCEEEEEECCCC
Confidence 8888999999998754
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00027 Score=57.86 Aligned_cols=85 Identities=14% Similarity=0.341 Sum_probs=68.3
Q ss_pred eEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCC-CEEEEEEC
Q psy13856 131 WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTG-DILTVSCG 209 (271)
Q Consensus 131 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~ 209 (271)
++....+.+|...|.+++|+|. ..-++..++.+.+|+|.|+++... +..+..+ ..+++++|..+. .++..|-.
T Consensus 183 fkssq~lp~~g~~IrdlafSp~---~~GLl~~asl~nkiki~dlet~~~--vssy~a~-~~~wSC~wDlde~h~IYaGl~ 256 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPF---NEGLLGLASLGNKIKIMDLETSCV--VSSYIAY-NQIWSCCWDLDERHVIYAGLQ 256 (463)
T ss_pred cchhhcccccchhhhhhccCcc---ccceeeeeccCceEEEEeccccee--eeheecc-CCceeeeeccCCcceeEEecc
Confidence 3455566778899999999995 333789999999999999998765 5566666 799999999875 56667777
Q ss_pred CCcEEEEEeCCC
Q psy13856 210 DNSVSLWKENTD 221 (271)
Q Consensus 210 D~~v~iw~~~~~ 221 (271)
.|.|.|||++..
T Consensus 257 nG~VlvyD~R~~ 268 (463)
T KOG1645|consen 257 NGMVLVYDMRQP 268 (463)
T ss_pred CceEEEEEccCC
Confidence 999999999754
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0023 Score=51.00 Aligned_cols=148 Identities=11% Similarity=0.083 Sum_probs=87.7
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEE
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRD 146 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~ 146 (271)
|+++.|...|.++++|...|.+-+|... +...|...+......+ ...+..+.++. -...|..
T Consensus 29 ItaVefd~tg~YlatGDkgGRVvlfer~--~s~~ceykf~teFQsh---------------e~EFDYLkSle-ieEKin~ 90 (460)
T COG5170 29 ITAVEFDETGLYLATGDKGGRVVLFERE--KSYGCEYKFFTEFQSH---------------ELEFDYLKSLE-IEEKINA 90 (460)
T ss_pred eeEEEeccccceEeecCCCceEEEeecc--cccccchhhhhhhccc---------------ccchhhhhhcc-HHHHhhh
Confidence 8899999999999999999999888753 2222221100000000 00001111111 2346778
Q ss_pred EEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce----------------------------------------eeeeee-
Q psy13856 147 VAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT----------------------------------------WTPFIM- 185 (271)
Q Consensus 147 v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~----------------------------------------~~~~~~- 185 (271)
|.|.... ....++..+.|++|++|.+..... .+...+
T Consensus 91 I~w~~~t--~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvya 168 (460)
T COG5170 91 IEWFDDT--GRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYA 168 (460)
T ss_pred eeeecCC--CcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecc
Confidence 8887421 355777778899999998864200 001111
Q ss_pred ccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccch
Q psy13856 186 NTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSE 235 (271)
Q Consensus 186 ~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 235 (271)
..|.--++++.|+.|...++++. |-.|.+|++.-...-=.+-.++++..
T Consensus 169 NaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nm 217 (460)
T COG5170 169 NAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNM 217 (460)
T ss_pred ccceeEeeeeeecCchheeeecc-ceeeeeccccccCCceEEEeccCccH
Confidence 35666688999999988877764 77899999874332223444555543
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.037 Score=47.64 Aligned_cols=140 Identities=12% Similarity=-0.008 Sum_probs=81.4
Q ss_pred ceEEEEcCCCCe-EEEEeCC---CcEEEEEeecCCCCceeecc---c-eeeEEEeeccceee--------eEEEE-e-eC
Q psy13856 67 NKAGALSPKLNR-SATSSFH---EAAKHLGTVQSSSPACLQPK---Y-FKLTVYSTKLTRIL--------ILVRI-C-GG 128 (271)
Q Consensus 67 i~~~~~s~~~~~-l~s~s~d---~~i~~~d~~~~~~~~~~~~~---~-~~~~~~~~~~~~l~--------~~v~i-~-~~ 128 (271)
+....|+|||+. ++..+.+ ..|+++|+ .+++..... . .....++++++.++ ..+.+ . ..
T Consensus 190 ~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl---~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~ 266 (419)
T PRK04043 190 NIFPKWANKEQTAFYYTSYGERKPTLYKYNL---YTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNT 266 (419)
T ss_pred eEeEEECCCCCcEEEEEEccCCCCEEEEEEC---CCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCC
Confidence 678999999984 5544433 45777787 444443332 1 23355788887776 34444 2 33
Q ss_pred CceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC-CC--eEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEE
Q psy13856 129 DKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ-DR--KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILT 205 (271)
Q Consensus 129 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~ 205 (271)
+. .+.+..+........|+| ||+.|+-.+. .+ .|.+.|+..++. ..... ... ....|+|+|+.|+
T Consensus 267 g~---~~~LT~~~~~d~~p~~SP----DG~~I~F~Sdr~g~~~Iy~~dl~~g~~--~rlt~-~g~--~~~~~SPDG~~Ia 334 (419)
T PRK04043 267 KT---LTQITNYPGIDVNGNFVE----DDKRIVFVSDRLGYPNIFMKKLNSGSV--EQVVF-HGK--NNSSVSTYKNYIV 334 (419)
T ss_pred Cc---EEEcccCCCccCccEECC----CCCEEEEEECCCCCceEEEEECCCCCe--EeCcc-CCC--cCceECCCCCEEE
Confidence 32 233333333334567999 6876655553 33 577778776653 12221 111 1248999999888
Q ss_pred EEECC---------CcEEEEEeCCC
Q psy13856 206 VSCGD---------NSVSLWKENTD 221 (271)
Q Consensus 206 s~s~D---------~~v~iw~~~~~ 221 (271)
..+.. ..|.+.++.++
T Consensus 335 ~~~~~~~~~~~~~~~~I~v~d~~~g 359 (419)
T PRK04043 335 YSSRETNNEFGKNTFNLYLISTNSD 359 (419)
T ss_pred EEEcCCCcccCCCCcEEEEEECCCC
Confidence 77653 25677777654
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.039 Score=44.97 Aligned_cols=185 Identities=10% Similarity=0.055 Sum_probs=105.2
Q ss_pred CCCCEEEEccC---CCeEEeccc------eeeeccccccccccceEEEEcCCCCeEEEEe-CCCcEEEEEeec-CCCCce
Q psy13856 33 RIGHTLISCDT---QAHIGIRST------ISLLQGSVYLRRESNKAGALSPKLNRSATSS-FHEAAKHLGTVQ-SSSPAC 101 (271)
Q Consensus 33 ~~g~~l~s~s~---d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~~~d~~~-~~~~~~ 101 (271)
++++.|.++.. +|.|.-|.+ +..+ .+....-....-+++++++++++++. ..+.|.++-+.+ +.-...
T Consensus 49 ~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~l-n~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~ 127 (346)
T COG2706 49 PDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFL-NRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPV 127 (346)
T ss_pred CCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEe-eccccCCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccc
Confidence 57767766654 466666665 1211 11110011146789999999888876 557888887742 111111
Q ss_pred eeccce--------------eeEEEeeccceee------eEEEE--eeCCceEEeEEec-CCCcceEEEEEccCCCCCCc
Q psy13856 102 LQPKYF--------------KLTVYSTKLTRIL------ILVRI--CGGDKWIEETKLE-NHSDWVRDVAWAPSWGLSKC 158 (271)
Q Consensus 102 ~~~~~~--------------~~~~~~~~~~~l~------~~v~i--~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~ 158 (271)
++...+ -...+++++++++ ..|.+ ..++.+....... .....-+.|.|+| +++
T Consensus 128 v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHp----n~k 203 (346)
T COG2706 128 VQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHP----NGK 203 (346)
T ss_pred eeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcC----CCc
Confidence 121111 1233445566666 33333 2344322222111 2234467899999 488
Q ss_pred EEEEEeC-CCeEEEEEcCCC--ceeeeeeec----cC--CCCeEEEEEecCCCEEEEEEC-CCcEEEEEeCCCC
Q psy13856 159 MIASCSQ-DRKVIIWTSNDY--VTWTPFIMN----TF--DDVVWNVSWSLTGDILTVSCG-DNSVSLWKENTDG 222 (271)
Q Consensus 159 ~l~s~~~-dg~i~iwd~~~~--~~~~~~~~~----~h--~~~v~~v~~~~~g~~l~s~s~-D~~v~iw~~~~~~ 222 (271)
+....++ +++|.+|..... +..+++.+. .. ......+..++||++|.++.. ...|.+|.++..+
T Consensus 204 ~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~ 277 (346)
T COG2706 204 YAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDG 277 (346)
T ss_pred EEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCC
Confidence 7766665 899999999873 211122111 12 235677889999999988764 4578888887653
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0013 Score=57.67 Aligned_cols=115 Identities=13% Similarity=0.051 Sum_probs=82.9
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEE
Q psy13856 68 KAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDV 147 (271)
Q Consensus 68 ~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v 147 (271)
.=-+++..+++++.|+.-|.+++|.- +.+.... ....+..+.+..+
T Consensus 37 ~lTc~dst~~~l~~GsS~G~lyl~~R---~~~~~~~-------------------------------~~~~~~~~~~~~~ 82 (726)
T KOG3621|consen 37 KLTCVDATEEYLAMGSSAGSVYLYNR---HTGEMRK-------------------------------LKNEGATGITCVR 82 (726)
T ss_pred EEEEeecCCceEEEecccceEEEEec---Cchhhhc-------------------------------ccccCccceEEEE
Confidence 33445667889999999999988885 3222211 1112234556667
Q ss_pred EEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeee----eeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 148 AWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPF----IMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 148 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
..++ +..++|.|+..|.|.++-+......... .-..|...|++++|++++..+++|...|+|..-.+++
T Consensus 83 ~vs~----~e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 83 SVSS----VEYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred Eecc----hhHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 7788 5788899999999999988764321111 1124678999999999999999999999999998876
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.022 Score=45.01 Aligned_cols=35 Identities=11% Similarity=0.272 Sum_probs=31.2
Q ss_pred CCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc
Q psy13856 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV 178 (271)
Q Consensus 140 h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 178 (271)
..+.|..|..+| |+..||+.+.+|.|.+|++-.-.
T Consensus 228 ~~d~i~kmSlSP----dg~~La~ih~sG~lsLW~iPsL~ 262 (282)
T PF15492_consen 228 EQDGIFKMSLSP----DGSLLACIHFSGSLSLWEIPSLR 262 (282)
T ss_pred CCCceEEEEECC----CCCEEEEEEcCCeEEEEecCcch
Confidence 457899999999 79999999999999999997654
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0013 Score=37.37 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=29.6
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 189 DDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 189 ~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
...|.+++|+|...+||.++.||.|.++.++..
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLNWQ 43 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECCCc
Confidence 457999999999999999999999999998543
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.05 Score=46.99 Aligned_cols=69 Identities=14% Similarity=0.238 Sum_probs=43.9
Q ss_pred EEEEEccCCCCCCcEEEEEe---CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEEC------CCcEEE
Q psy13856 145 RDVAWAPSWGLSKCMIASCS---QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG------DNSVSL 215 (271)
Q Consensus 145 ~~v~~~p~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~------D~~v~i 215 (271)
+.+.|+| .|.+++.+. ..|.+.++|+...... ......| ...+.+.|.|.|+|+++++. |.--+|
T Consensus 496 N~vfwsP----kG~fvvva~l~s~~g~l~F~D~~~a~~k-~~~~~eh-~~at~veWDPtGRYvvT~ss~wrhk~d~GYri 569 (698)
T KOG2314|consen 496 NTVFWSP----KGRFVVVAALVSRRGDLEFYDTDYADLK-DTASPEH-FAATEVEWDPTGRYVVTSSSSWRHKVDNGYRI 569 (698)
T ss_pred ceEEEcC----CCcEEEEEEecccccceEEEecchhhhh-hccCccc-cccccceECCCCCEEEEeeehhhhccccceEE
Confidence 4567777 367665543 4577778877643321 1112233 25677999999999999876 455677
Q ss_pred EEeC
Q psy13856 216 WKEN 219 (271)
Q Consensus 216 w~~~ 219 (271)
|++.
T Consensus 570 ~tfq 573 (698)
T KOG2314|consen 570 FTFQ 573 (698)
T ss_pred EEee
Confidence 7765
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.056 Score=50.88 Aligned_cols=188 Identities=15% Similarity=0.163 Sum_probs=105.7
Q ss_pred CCCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCC--CCcee--
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSS--SPACL-- 102 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~--~~~~~-- 102 (271)
.+.++..++.+..+|.|.+-|. +.....-... |.+.+||||+..++-.+.++++.+ ...+.. ..+.+
T Consensus 76 fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~G----I~aaswS~Dee~l~liT~~~tll~-mT~~f~~i~E~~L~~ 150 (1265)
T KOG1920|consen 76 FLADTNSICVITALGDIILVDPETLELEIVGNVDNG----ISAASWSPDEELLALITGRQTLLF-MTKDFEPIAEKPLDA 150 (1265)
T ss_pred EecccceEEEEecCCcEEEEcccccceeeeeeccCc----eEEEeecCCCcEEEEEeCCcEEEE-Eeccccchhcccccc
Confidence 3446666777788888888888 3333344455 899999999999999988888844 221000 00000
Q ss_pred ---------ecc-------c---------------------------eeeEEEeeccceee----------eEEEE-eeC
Q psy13856 103 ---------QPK-------Y---------------------------FKLTVYSTKLTRIL----------ILVRI-CGG 128 (271)
Q Consensus 103 ---------~~~-------~---------------------------~~~~~~~~~~~~l~----------~~v~i-~~~ 128 (271)
..- + -+...|-.+|++++ +.+++ ...
T Consensus 151 d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE 230 (1265)
T KOG1920|consen 151 DDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE 230 (1265)
T ss_pred ccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc
Confidence 000 0 01133444466665 23333 222
Q ss_pred CceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe---CCCeEEEEEcCCCceee-eeeeccCCCCeEEEEEecCCCEE
Q psy13856 129 DKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS---QDRKVIIWTSNDYVTWT-PFIMNTFDDVVWNVSWSLTGDIL 204 (271)
Q Consensus 129 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~v~~~~~g~~l 204 (271)
+ .+...-......=.+++|-| .|.++++-. .|+.|.++..+..+.-. ..........+..++|+.++.+|
T Consensus 231 g--~Lns~se~~~~l~~~LsWkP----sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiL 304 (1265)
T KOG1920|consen 231 G--ALNSTSEPVEGLQHSLSWKP----SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDIL 304 (1265)
T ss_pred c--hhhcccCcccccccceeecC----CCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCCce
Confidence 2 11111111122335899999 588888854 35678888754433200 00112223348999999999999
Q ss_pred EE---EECCCcEEEEEeCCCCceeEEEEe
Q psy13856 205 TV---SCGDNSVSLWKENTDGAWQCITEM 230 (271)
Q Consensus 205 ~s---~s~D~~v~iw~~~~~~~~~~~~~~ 230 (271)
|. ......|++|-..+ -.|-.-.++
T Consensus 305 Av~~~~~e~~~v~lwt~~N-yhWYLKq~l 332 (1265)
T KOG1920|consen 305 AVVTSNLENSLVQLWTTGN-YHWYLKQEL 332 (1265)
T ss_pred eeeecccccceEEEEEecC-eEEEEEEEE
Confidence 88 44445599998753 345443333
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.0039 Score=54.25 Aligned_cols=92 Identities=13% Similarity=0.135 Sum_probs=70.1
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceE-
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVR- 145 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~- 145 (271)
+.-+.|+|.-..+|.+..+|.+-+... .|..+.++.-|...++
T Consensus 23 i~~~ewnP~~dLiA~~t~~gelli~R~------------------------------------n~qRlwtip~p~~~v~~ 66 (665)
T KOG4640|consen 23 IKRIEWNPKMDLIATRTEKGELLIHRL------------------------------------NWQRLWTIPIPGENVTA 66 (665)
T ss_pred eEEEEEcCccchhheeccCCcEEEEEe------------------------------------ccceeEeccCCCCccce
Confidence 567889998889999999998866665 2456667766666666
Q ss_pred EEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEec
Q psy13856 146 DVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSL 199 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~ 199 (271)
+++|.| ||.+||.|-.||+|++-|..++... ......-...|.++.|.+
T Consensus 67 sL~W~~----DGkllaVg~kdG~I~L~Dve~~~~l-~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 67 SLCWRP----DGKLLAVGFKDGTIRLHDVEKGGRL-VSFLFSVETDISKGIWDR 115 (665)
T ss_pred eeeecC----CCCEEEEEecCCeEEEEEccCCCce-eccccccccchheeeccc
Confidence 999999 8999999999999999999987752 111223345777777763
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0013 Score=59.19 Aligned_cols=71 Identities=20% Similarity=0.353 Sum_probs=61.2
Q ss_pred eEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 144 VRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 144 v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
+++++|+|. .-.|+.|-.-|.+.+|.....+. ......|..++.-+.|+|+|..+.++..-|.|.+|....
T Consensus 62 atSLCWHpe----~~vLa~gwe~g~~~v~~~~~~e~--htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 62 ATSLCWHPE----EFVLAQGWEMGVSDVQKTNTTET--HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred hhhhccChH----HHHHhhccccceeEEEecCCcee--eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 457999994 67888898999999999887664 455678999999999999999999999999999998863
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.056 Score=50.88 Aligned_cols=188 Identities=11% Similarity=0.020 Sum_probs=102.1
Q ss_pred cccceecccCCCCCCCEEEEccCCCeEEeccc------eee----------------------eccccc-----------
Q psy13856 21 TLEIETYTESPLRIGHTLISCDTQAHIGIRST------ISL----------------------LQGSVY----------- 61 (271)
Q Consensus 21 ~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~------~~~----------------------~~~h~~----------- 61 (271)
..+..+-..++.||++.++-...++++.+-+. .+. +++..+
T Consensus 107 ~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~e 186 (1265)
T KOG1920|consen 107 NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKE 186 (1265)
T ss_pred eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccc
Confidence 34445566777789999888888888877543 111 111100
Q ss_pred -c-----ccccceEEEEcCCCCeEEEEe----CC-CcEEEEEeecCCCCceee---cc--ceeeEEEeeccceee-----
Q psy13856 62 -L-----RRESNKAGALSPKLNRSATSS----FH-EAAKHLGTVQSSSPACLQ---PK--YFKLTVYSTKLTRIL----- 120 (271)
Q Consensus 62 -~-----~~~~i~~~~~s~~~~~l~s~s----~d-~~i~~~d~~~~~~~~~~~---~~--~~~~~~~~~~~~~l~----- 120 (271)
. ....=..+.|.-||.++++.. .+ ..+++||. + +..-. .. -.....|-+.|..++
T Consensus 187 k~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~dr---E-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~ 262 (1265)
T KOG1920|consen 187 KALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDR---E-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCK 262 (1265)
T ss_pred ccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecc---c-chhhcccCcccccccceeecCCCCeEeeeeec
Confidence 0 000012488889999988732 33 78999996 2 22211 11 123344555555555
Q ss_pred ---eEEEE-eeCCce--EEeEEecCCCcceEEEEEccCCCCCCcEEEE---EeCCCeEEEEEcCCCceeeeeeeccCCCC
Q psy13856 121 ---ILVRI-CGGDKW--IEETKLENHSDWVRDVAWAPSWGLSKCMIAS---CSQDRKVIIWTSNDYVTWTPFIMNTFDDV 191 (271)
Q Consensus 121 ---~~v~i-~~~~~~--~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s---~~~dg~i~iwd~~~~~~~~~~~~~~h~~~ 191 (271)
+.|.+ ..+|-- .....+......+..++|+. ++..|+. ......|++|...+..-+ .+......+.
T Consensus 263 ~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns----~sdiLAv~~~~~e~~~v~lwt~~NyhWY-LKq~l~~~~~ 337 (1265)
T KOG1920|consen 263 TSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNS----NSDILAVVTSNLENSLVQLWTTGNYHWY-LKQELQFSQK 337 (1265)
T ss_pred CCCCcEEEEecCCccccccccCCcccccchheeeecC----CCCceeeeecccccceEEEEEecCeEEE-EEEEEecccc
Confidence 33444 333310 11111222334489999999 5888877 555556999999886543 3333333333
Q ss_pred eEEEEEecCC-CEEEEEECCCcEEEEEe
Q psy13856 192 VWNVSWSLTG-DILTVSCGDNSVSLWKE 218 (271)
Q Consensus 192 v~~v~~~~~g-~~l~s~s~D~~v~iw~~ 218 (271)
.. +.|+|.. ..|..-..+|...++++
T Consensus 338 ~~-~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 338 AL-LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred cc-ccccCCCceeEEEEecCCcEEEEEE
Confidence 22 7788853 22333335666555554
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.017 Score=48.95 Aligned_cols=57 Identities=11% Similarity=-0.042 Sum_probs=38.3
Q ss_pred CcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q psy13856 157 KCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw 216 (271)
+..++.++.+|.+.++|..+++. ...+..+...+..--.-.+ ..|+.++.||.|+.|
T Consensus 320 g~~l~~~~~~G~l~~~d~~tG~~--~~~~~~~~~~~~~sp~~~~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 320 GGYLVVGDFEGYLHWLSREDGSF--VARLKTDGSGIASPPVVVG-DGLLVQTRDGDLYAF 376 (377)
T ss_pred CCEEEEEeCCCEEEEEECCCCCE--EEEEEcCCCccccCCEEEC-CEEEEEeCCceEEEe
Confidence 46888899999999999998875 4444444433322111123 457888889998776
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.019 Score=48.88 Aligned_cols=127 Identities=13% Similarity=0.121 Sum_probs=80.3
Q ss_pred CeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEE--eCCCcEEEEEeecCCCCceeeccceeeEEEeeccce
Q psy13856 45 AHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATS--SFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTR 118 (271)
Q Consensus 45 ~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~--s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (271)
.++.|+++ +.....-.+. |.++.|.|.++.+++. ..+..+.++|++
T Consensus 255 snLyl~~~~e~~i~V~~~~~~p----Vhdf~W~p~S~~F~vi~g~~pa~~s~~~lr------------------------ 306 (561)
T COG5354 255 SNLYLLRITERSIPVEKDLKDP----VHDFTWEPLSSRFAVISGYMPASVSVFDLR------------------------ 306 (561)
T ss_pred ceEEEEeecccccceecccccc----ceeeeecccCCceeEEecccccceeecccc------------------------
Confidence 34555555 2222344566 8999999988876654 477778788862
Q ss_pred eeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCC---CeEEEEEcCCCceeeeeeeccCCCCeEEE
Q psy13856 119 ILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQD---RKVIIWTSNDYVTWTPFIMNTFDDVVWNV 195 (271)
Q Consensus 119 l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~v 195 (271)
+ ..... .-+..=..+.|+| .+++++.++-| |.+-+||...... ....+.+-. ..-+
T Consensus 307 ----------~--Nl~~~--~Pe~~rNT~~fsp----~~r~il~agF~nl~gni~i~~~~~rf~-~~~~~~~~n--~s~~ 365 (561)
T COG5354 307 ----------G--NLRFY--FPEQKRNTIFFSP----HERYILFAGFDNLQGNIEIFDPAGRFK-VAGAFNGLN--TSYC 365 (561)
T ss_pred ----------c--ceEEe--cCCcccccccccC----cccEEEEecCCccccceEEeccCCceE-EEEEeecCC--ceEe
Confidence 1 11111 1223334578999 48888887765 6799999766432 122333332 2346
Q ss_pred EEecCCCEEEEEEC------CCcEEEEEeCC
Q psy13856 196 SWSLTGDILTVSCG------DNSVSLWKENT 220 (271)
Q Consensus 196 ~~~~~g~~l~s~s~------D~~v~iw~~~~ 220 (271)
.|+|+++++.+... |+.++||++..
T Consensus 366 ~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 366 DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred eccCCceEEEecCCCcccccCcceEEEEecC
Confidence 79999999877643 78899999964
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.11 Score=41.14 Aligned_cols=140 Identities=14% Similarity=0.022 Sum_probs=83.5
Q ss_pred CCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEc-CCCCeEEEEeCCCcEEEEEeecCCCCceeecccee
Q psy13856 34 IGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALS-PKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFK 108 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s-~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~ 108 (271)
++.++++--..+.|..|+. ...+.. .. ..++++. +++ .++.+..++.. ++|. .++
T Consensus 11 ~g~l~~~D~~~~~i~~~~~~~~~~~~~~~--~~----~~G~~~~~~~g-~l~v~~~~~~~-~~d~---~~g--------- 70 (246)
T PF08450_consen 11 DGRLYWVDIPGGRIYRVDPDTGEVEVIDL--PG----PNGMAFDRPDG-RLYVADSGGIA-VVDP---DTG--------- 70 (246)
T ss_dssp TTEEEEEETTTTEEEEEETTTTEEEEEES--SS----EEEEEEECTTS-EEEEEETTCEE-EEET---TTT---------
T ss_pred CCEEEEEEcCCCEEEEEECCCCeEEEEec--CC----CceEEEEccCC-EEEEEEcCceE-EEec---CCC---------
Confidence 5667777767788888877 111111 11 4577777 554 44555555444 5565 222
Q ss_pred eEEEeeccceeeeEEEEeeCCceEEeEEec--C-CCcceEEEEEccCCCCCCcEEEEEeCC--------CeEEEEEcCCC
Q psy13856 109 LTVYSTKLTRILILVRICGGDKWIEETKLE--N-HSDWVRDVAWAPSWGLSKCMIASCSQD--------RKVIIWTSNDY 177 (271)
Q Consensus 109 ~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~--~-h~~~v~~v~~~p~~~~~~~~l~s~~~d--------g~i~iwd~~~~ 177 (271)
.++.+.... . .....+.++++| +|++.++.... |.+..++.. +
T Consensus 71 ---------------------~~~~~~~~~~~~~~~~~~ND~~vd~----~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~ 124 (246)
T PF08450_consen 71 ---------------------KVTVLADLPDGGVPFNRPNDVAVDP----DGNLYVTDSGGGGASGIDPGSVYRIDPD-G 124 (246)
T ss_dssp ---------------------EEEEEEEEETTCSCTEEEEEEEE-T----TS-EEEEEECCBCTTCGGSEEEEEEETT-S
T ss_pred ---------------------cEEEEeeccCCCcccCCCceEEEcC----CCCEEEEecCCCccccccccceEEECCC-C
Confidence 222222221 2 345678899999 68887776654 557777766 3
Q ss_pred ceeeeeeeccCCCCeEEEEEecCCCEEE-EEECCCcEEEEEeCCCC
Q psy13856 178 VTWTPFIMNTFDDVVWNVSWSLTGDILT-VSCGDNSVSLWKENTDG 222 (271)
Q Consensus 178 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~-s~s~D~~v~iw~~~~~~ 222 (271)
+ ...+...-...+.++|+|+++.|+ +-+..+.|..++++..+
T Consensus 125 ~---~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~ 167 (246)
T PF08450_consen 125 K---VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADG 167 (246)
T ss_dssp E---EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTT
T ss_pred e---EEEEecCcccccceEECCcchheeecccccceeEEEeccccc
Confidence 3 333333345678999999998776 45567889999987543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.12 Score=41.03 Aligned_cols=136 Identities=9% Similarity=0.030 Sum_probs=78.8
Q ss_pred CCCCEEEEccCC--------CeEEeccc---eeeeccccccccccceEEEEcCCCCeEE-EEeCCCcEEEEEeecCCCCc
Q psy13856 33 RIGHTLISCDTQ--------AHIGIRST---ISLLQGSVYLRRESNKAGALSPKLNRSA-TSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 33 ~~g~~l~s~s~d--------~~i~lwd~---~~~~~~h~~~~~~~i~~~~~s~~~~~l~-s~s~d~~i~~~d~~~~~~~~ 100 (271)
++|.+.++.... |.|..++. ...+...-.. ...++|+|+++.|+ +-+..+.|..++.. ..+.
T Consensus 95 ~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~----pNGi~~s~dg~~lyv~ds~~~~i~~~~~~--~~~~ 168 (246)
T PF08450_consen 95 PDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGF----PNGIAFSPDGKTLYVADSFNGRIWRFDLD--ADGG 168 (246)
T ss_dssp TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESS----EEEEEEETTSSEEEEEETTTTEEEEEEEE--TTTC
T ss_pred CCCCEEEEecCCCccccccccceEEECCCCeEEEEecCccc----ccceEECCcchheeecccccceeEEEecc--cccc
Confidence 577777765543 33444444 2222222333 57899999998665 55677777777762 1111
Q ss_pred eeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCcee
Q psy13856 101 CLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTW 180 (271)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 180 (271)
.+. ..+....+....+..-.++++. +|++.++....+.|.+++.+ ++.
T Consensus 169 ~~~--------------------------~~~~~~~~~~~~g~pDG~~vD~----~G~l~va~~~~~~I~~~~p~-G~~- 216 (246)
T PF08450_consen 169 ELS--------------------------NRRVFIDFPGGPGYPDGLAVDS----DGNLWVADWGGGRIVVFDPD-GKL- 216 (246)
T ss_dssp CEE--------------------------EEEEEEE-SSSSCEEEEEEEBT----TS-EEEEEETTTEEEEEETT-SCE-
T ss_pred cee--------------------------eeeeEEEcCCCCcCCCcceEcC----CCCEEEEEcCCCEEEEECCC-ccE-
Confidence 011 0012222332334467899998 68888888889999999987 554
Q ss_pred eeeeeccCCCCeEEEEEe-cCCCEEEEE
Q psy13856 181 TPFIMNTFDDVVWNVSWS-LTGDILTVS 207 (271)
Q Consensus 181 ~~~~~~~h~~~v~~v~~~-~~g~~l~s~ 207 (271)
...+.--...+++++|. ++...|+..
T Consensus 217 -~~~i~~p~~~~t~~~fgg~~~~~L~vT 243 (246)
T PF08450_consen 217 -LREIELPVPRPTNCAFGGPDGKTLYVT 243 (246)
T ss_dssp -EEEEE-SSSSEEEEEEESTTSSEEEEE
T ss_pred -EEEEcCCCCCEEEEEEECCCCCEEEEE
Confidence 33333334588999994 565555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.14 Score=41.63 Aligned_cols=191 Identities=16% Similarity=0.106 Sum_probs=99.8
Q ss_pred cceeEE-ee-ceeEe-eccccccceecccC-CCCCCCEEEEc-----cCCCeEEeccc------eeeeccccccccccce
Q psy13856 4 KEWLLV-SC-DGLLM-TLKPTLEIETYTES-PLRIGHTLISC-----DTQAHIGIRST------ISLLQGSVYLRRESNK 68 (271)
Q Consensus 4 ~~~~~~-~~-~~~~~-~~~~~~~~~~~~~~-~~~~g~~l~s~-----s~d~~i~lwd~------~~~~~~h~~~~~~~i~ 68 (271)
+.|+++ .| +|.+. .+.....-+.|-.- .++||++|.+. +..|.|-+||. +..+..|.-. .-
T Consensus 27 G~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIG----PH 102 (305)
T PF07433_consen 27 GTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIG----PH 102 (305)
T ss_pred CcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcC----hh
Confidence 344433 44 44444 33333344444332 34789988775 44589999998 5556666655 67
Q ss_pred EEEEcCCCCeEEEEe-------CCCc-----------EEEEEeecCCCCceeecccee-------eEEEeec--cceee-
Q psy13856 69 AGALSPKLNRSATSS-------FHEA-----------AKHLGTVQSSSPACLQPKYFK-------LTVYSTK--LTRIL- 120 (271)
Q Consensus 69 ~~~~s~~~~~l~s~s-------~d~~-----------i~~~d~~~~~~~~~~~~~~~~-------~~~~~~~--~~~l~- 120 (271)
.+.+.|||..|+.+. ..|. +-..|. .++..+.....+ ....... +..+.
T Consensus 103 el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~---~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a 179 (305)
T PF07433_consen 103 ELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDA---RSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFA 179 (305)
T ss_pred hEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEec---CCCceeeeeecCccccccceeeEEecCCCcEEEE
Confidence 889999997766652 1122 222333 445444432221 1111111 11111
Q ss_pred -----------eEEEEeeCCceEEeEEec-------CCCcceEEEEEccCCCCCCcEE-EEEeCCCeEEEEEcCCCceee
Q psy13856 121 -----------ILVRICGGDKWIEETKLE-------NHSDWVRDVAWAPSWGLSKCMI-ASCSQDRKVIIWTSNDYVTWT 181 (271)
Q Consensus 121 -----------~~v~i~~~~~~~~~~~~~-------~h~~~v~~v~~~p~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~ 181 (271)
..+-+...+ .....+. .-.+++-+|++++ ++.++ +|+=.-+.+.+||..++..
T Consensus 180 ~Q~qg~~~~~~PLva~~~~g--~~~~~~~~p~~~~~~l~~Y~gSIa~~~----~g~~ia~tsPrGg~~~~~d~~tg~~-- 251 (305)
T PF07433_consen 180 MQYQGDPGDAPPLVALHRRG--GALRLLPAPEEQWRRLNGYIGSIAADR----DGRLIAVTSPRGGRVAVWDAATGRL-- 251 (305)
T ss_pred EecCCCCCccCCeEEEEcCC--CcceeccCChHHHHhhCCceEEEEEeC----CCCEEEEECCCCCEEEEEECCCCCE--
Confidence 111111111 1111111 1246788999999 57666 5555678899999999874
Q ss_pred eeeeccCCCCeEEEEEecCCCEEEEEECCCcE
Q psy13856 182 PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSV 213 (271)
Q Consensus 182 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v 213 (271)
..... -..+..++-.+++ ++++.+ .|.+
T Consensus 252 ~~~~~--l~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 252 LGSVP--LPDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred eeccc--cCceeeeeecCCc-eEEeCC-CccE
Confidence 22111 2245667666666 444444 4554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.073 Score=46.04 Aligned_cols=136 Identities=13% Similarity=-0.018 Sum_probs=68.4
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceee----eEEEEeeCCceEEeEEecCCCc
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRIL----ILVRICGGDKWIEETKLENHSD 142 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~v~i~~~~~~~~~~~~~~h~~ 142 (271)
+..+.++|+|+.++.++. |...++.. ...+..........+|...+++.+ +.|.+..+-.......+.. ..
T Consensus 35 p~~ls~npngr~v~V~g~-geY~iyt~---~~~r~k~~G~g~~~vw~~~n~yAv~~~~~~I~I~kn~~~~~~k~i~~-~~ 109 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGD-GEYEIYTA---LAWRNKAFGSGLSFVWSSRNRYAVLESSSTIKIYKNFKNEVVKSIKL-PF 109 (443)
T ss_dssp -SEEEE-TTSSEEEEEET-TEEEEEET---TTTEEEEEEE-SEEEE-TSSEEEEE-TTS-EEEEETTEE-TT------SS
T ss_pred CeeEEECCCCCEEEEEcC-CEEEEEEc---cCCcccccCceeEEEEecCccEEEEECCCeEEEEEcCccccceEEcC-Cc
Confidence 679999999999888654 44447774 222222222234455555444433 4455511110011111111 11
Q ss_pred ceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 143 WVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 143 ~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
.+..|-. |.+|+..+.+ .|.+||+.+... +..+... +|..|.|+++|.+++..+.+ .+.|++.+.
T Consensus 110 ~~~~If~-------G~LL~~~~~~-~i~~yDw~~~~~--i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 110 SVEKIFG-------GNLLGVKSSD-FICFYDWETGKL--IRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp -EEEEE--------SSSEEEEETT-EEEEE-TTT--E--EEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred ccceEEc-------CcEEEEECCC-CEEEEEhhHcce--eeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 2233322 4667666644 899999999775 4444422 48999999999999999855 688888753
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.058 Score=48.54 Aligned_cols=172 Identities=12% Similarity=-0.003 Sum_probs=100.8
Q ss_pred CEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcC---CC-CeEEEEeCCCcEEEEEeecCCCCceeeccc
Q psy13856 36 HTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSP---KL-NRSATSSFHEAAKHLGTVQSSSPACLQPKY 106 (271)
Q Consensus 36 ~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~---~~-~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~ 106 (271)
-+||++...|.|.+||+ +..+..|... +.++.|-+ +. ..|+......++-+|+. .+|.......
T Consensus 80 lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~----~qdl~W~~~rd~Srd~LlaIh~ss~lvLwnt---dtG~k~Wk~~ 152 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASVINWLSHSNDS----VQDLCWVPARDDSRDVLLAIHGSSTLVLWNT---DTGEKFWKYD 152 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhhhhhhcCCCcc----hhheeeeeccCcchheeEEecCCcEEEEEEc---cCCceeeccc
Confidence 36889999999999999 5566777787 88888865 44 36666677788889988 7777766553
Q ss_pred e---eeEEEeec---cceee-----eEEEE-------eeCCceEEeEEecCCCc----------------c---------
Q psy13856 107 F---KLTVYSTK---LTRIL-----ILVRI-------CGGDKWIEETKLENHSD----------------W--------- 143 (271)
Q Consensus 107 ~---~~~~~~~~---~~~l~-----~~v~i-------~~~~~~~~~~~~~~h~~----------------~--------- 143 (271)
+ ....+..+ .+.+. |.+-+ ..+..-+..+.-..|.+ .
T Consensus 153 ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity 232 (1062)
T KOG1912|consen 153 YSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITY 232 (1062)
T ss_pred cCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHH
Confidence 3 22222222 12221 22211 11111122222222221 0
Q ss_pred eEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecC--CCEEEEEECCCcEEEEEeCC
Q psy13856 144 VRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLT--GDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 144 v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~--g~~l~s~s~D~~v~iw~~~~ 220 (271)
....+|+|. .+-++-....+.+.++|++-..+.....+. .+.+.=+.|-|+ ...|++.-.||.+.||--+.
T Consensus 233 ~a~faf~p~----~rn~lfi~~prellv~dle~~~~l~vvpie--r~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 233 CAQFAFSPH----WRNILFITFPRELLVFDLEYECCLAVVPIE--RGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred HHhhhcChh----hhceEEEEeccceEEEcchhhceeEEEEec--cCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 013556774 333333445678999999877663222233 333344566665 46788999999999997654
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.061 Score=46.51 Aligned_cols=158 Identities=11% Similarity=0.090 Sum_probs=79.5
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccceeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRSTISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
....+-.|+|+.++.++. |.-.++.....-....+. ...+.|.+. +.+|+-....+|.++...+....+.+...
T Consensus 35 p~~ls~npngr~v~V~g~-geY~iyt~~~~r~k~~G~----g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~~~~k~i~~~ 108 (443)
T PF04053_consen 35 PQSLSHNPNGRFVLVCGD-GEYEIYTALAWRNKAFGS----GLSFVWSSR-NRYAVLESSSTIKIYKNFKNEVVKSIKLP 108 (443)
T ss_dssp -SEEEE-TTSSEEEEEET-TEEEEEETTTTEEEEEEE-----SEEEE-TS-SEEEEE-TTS-EEEEETTEE-TT-----S
T ss_pred CeeEEECCCCCEEEEEcC-CEEEEEEccCCcccccCc----eeEEEEecC-ccEEEEECCCeEEEEEcCccccceEEcCC
Confidence 344445579998888555 888877751111122333 567889985 45677767888988754322222233333
Q ss_pred ceeeEEEeeccceee----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC--
Q psy13856 106 YFKLTVYSTKLTRIL----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY-- 177 (271)
Q Consensus 106 ~~~~~~~~~~~~~l~----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~-- 177 (271)
.....++. |..|. +.+.+ +.++ +.++.+.-. +|..|.|++ ++.+++..+.+ .+.+++....
T Consensus 109 ~~~~~If~--G~LL~~~~~~~i~~yDw~~~--~~i~~i~v~--~vk~V~Ws~----~g~~val~t~~-~i~il~~~~~~~ 177 (443)
T PF04053_consen 109 FSVEKIFG--GNLLGVKSSDFICFYDWETG--KLIRRIDVS--AVKYVIWSD----DGELVALVTKD-SIYILKYNLEAV 177 (443)
T ss_dssp S-EEEEE---SSSEEEEETTEEEEE-TTT----EEEEESS---E-EEEEE-T----TSSEEEEE-S--SEEEEEE-HHHH
T ss_pred cccceEEc--CcEEEEECCCCEEEEEhhHc--ceeeEEecC--CCcEEEEEC----CCCEEEEEeCC-eEEEEEecchhc
Confidence 32344454 66655 44555 4455 667776632 489999999 68999998866 5677766543
Q ss_pred -----cee--eeeeeccCCCCeEEEEEecC
Q psy13856 178 -----VTW--TPFIMNTFDDVVWNVSWSLT 200 (271)
Q Consensus 178 -----~~~--~~~~~~~h~~~v~~v~~~~~ 200 (271)
+.. ....+......|.+.+|..+
T Consensus 178 ~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d 207 (443)
T PF04053_consen 178 AAIPEEGVEDAFELIHEISERIKSGCWVED 207 (443)
T ss_dssp HHBTTTB-GGGEEEEEEE-S--SEEEEETT
T ss_pred ccccccCchhceEEEEEecceeEEEEEEcC
Confidence 000 02233333457777777765
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.066 Score=36.39 Aligned_cols=100 Identities=14% Similarity=0.039 Sum_probs=65.9
Q ss_pred ceEEEEcC---CC-CeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCc
Q psy13856 67 NKAGALSP---KL-NRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSD 142 (271)
Q Consensus 67 i~~~~~s~---~~-~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~ 142 (271)
|+++++.. || +.|+.|+.|..||+|+-. ..+.++.. .+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~-------------------------------------e~~~Ei~e-~~ 43 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD-------------------------------------EIVAEITE-TD 43 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC-------------------------------------cEEEEEec-cc
Confidence 45555543 44 489999999999999851 34555553 45
Q ss_pred ceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEec-C--C-CEEEEEECCCcEE
Q psy13856 143 WVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSL-T--G-DILTVSCGDNSVS 214 (271)
Q Consensus 143 ~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~-~--g-~~l~s~s~D~~v~ 214 (271)
.|.++.-.. +..|+-+..+|+|-+|+... +.|..+ ....+.++++.. + | .-|++|-.+|.|-
T Consensus 44 ~v~~L~~~~-----~~~F~Y~l~NGTVGvY~~~~-RlWRiK----SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 44 KVTSLCSLG-----GGRFAYALANGTVGVYDRSQ-RLWRIK----SKNQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred ceEEEEEcC-----CCEEEEEecCCEEEEEeCcc-eeeeec----cCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 677777665 47899999999999998643 444222 222355555443 3 2 3688888888764
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.00023 Score=61.75 Aligned_cols=142 Identities=13% Similarity=0.121 Sum_probs=93.4
Q ss_pred CCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcC-CCCeEEEEe----CCCcEEEEEeecCCCCce
Q psy13856 34 IGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSP-KLNRSATSS----FHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s----~d~~i~~~d~~~~~~~~~ 101 (271)
|..+++.|..+|.|.+-.+ -....+|... +++++|++ |.+.||.|- .|..+.+||+. ++-.
T Consensus 69 d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~----Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~---s~lt 141 (783)
T KOG1008|consen 69 DRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARP----CTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN---SLLT 141 (783)
T ss_pred chhhhhhccccCceEEeecCCcccccceeccccccc----ccccccccccHHHHHhhhhhhcccCCccceecc---cccC
Confidence 3457899999999998877 3344556666 88999998 556776663 55678899983 2211
Q ss_pred eeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceee
Q psy13856 102 LQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWT 181 (271)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 181 (271)
.. ...+.... +......+++|-. +..++.+|...+.+.++|++...
T Consensus 142 vP------------------------ke~~~fs~---~~l~gqns~cwlr----d~klvlaGm~sr~~~ifdlRqs~--- 187 (783)
T KOG1008|consen 142 VP------------------------KESPLFSS---STLDGQNSVCWLR----DTKLVLAGMTSRSVHIFDLRQSL--- 187 (783)
T ss_pred CC------------------------cccccccc---ccccCcccccccc----Ccchhhcccccchhhhhhhhhhh---
Confidence 00 00001111 1223344788885 78899999999999999998533
Q ss_pred eeeeccCCCCeEEEEEec-CCCEEEEEECCCcEEEEE
Q psy13856 182 PFIMNTFDDVVWNVSWSL-TGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 182 ~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~v~iw~ 217 (271)
.....-.+..+..+..+| .+.++++-. |+.|.+||
T Consensus 188 ~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD 223 (783)
T KOG1008|consen 188 DSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWD 223 (783)
T ss_pred hhhhhhhhhhcccceecCCCCCceeccc-cCceeecc
Confidence 111122233566677788 677877666 99999999
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.035 Score=46.72 Aligned_cols=87 Identities=15% Similarity=0.141 Sum_probs=62.4
Q ss_pred CCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceee------------------------------eeeeccCC
Q psy13856 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWT------------------------------PFIMNTFD 189 (271)
Q Consensus 140 h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------------------------------~~~~~~h~ 189 (271)
......++.|+| ++..+.+-+.|..|++++..+++..+ ...+..|.
T Consensus 200 ~Kt~pts~Efsp----~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~ 275 (558)
T KOG0882|consen 200 AKTEPTSFEFSP----DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHG 275 (558)
T ss_pred cccCccceEEcc----ccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhc
Confidence 345678999999 79999999999999999998754200 00112233
Q ss_pred C-CeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccc
Q psy13856 190 D-VVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 190 ~-~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
. .-..+.|...|++|+.++-=| |++.++.++ .+++.+...+
T Consensus 276 ~~~~~~~~fdes~~flly~t~~g-ikvin~~tn---~v~ri~gk~e 317 (558)
T KOG0882|consen 276 STVGTNAVFDESGNFLLYGTILG-IKVINLDTN---TVVRILGKDE 317 (558)
T ss_pred CcccceeEEcCCCCEEEeeccee-EEEEEeecC---eEEEEeccch
Confidence 3 346788999999999998665 899999887 5555554433
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.053 Score=36.83 Aligned_cols=69 Identities=10% Similarity=0.058 Sum_probs=47.4
Q ss_pred eEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEe
Q psy13856 144 VRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 144 v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~ 218 (271)
|+++++..--+...+.|+.|+.|..|++|+-.. . ...+. -.+.|.+++-... ..++.+-.+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e--~--~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE--I--VAEIT-ETDKVTSLCSLGG-GRFAYALANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc--E--EEEEe-cccceEEEEEcCC-CEEEEEecCCEEEEEeC
Confidence 567777653111246899999999999998654 1 22333 3456777766555 56888888999988875
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.36 Score=41.57 Aligned_cols=33 Identities=9% Similarity=0.179 Sum_probs=28.2
Q ss_pred CCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 189 DDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 189 ~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.+++..++.||+|+++|.-..+|.+.+...+-.
T Consensus 216 ~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 216 DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred CCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 358999999999999999999999988875544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.24 Score=42.24 Aligned_cols=154 Identities=12% Similarity=0.054 Sum_probs=85.2
Q ss_pred cceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc-eee--ccceeeEEEeeccceeeeEEEE---eeC---CceEEeEE
Q psy13856 66 SNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA-CLQ--PKYFKLTVYSTKLTRILILVRI---CGG---DKWIEETK 136 (271)
Q Consensus 66 ~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~-~~~--~~~~~~~~~~~~~~~l~~~v~i---~~~---~~~~~~~~ 136 (271)
.|..+.|+++..-|+.|...|.|-+|.....+... ... ...+..+-+..... -...+.| ... .-+.+...
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNS-PGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGS-S-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCC-CcceEEehhhCCcccccccCchhh
Confidence 47899999998899999999999887652111111 000 00000000000000 0022223 011 12456666
Q ss_pred ecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeecc------CCCCeEEEEEec-----CC---C
Q psy13856 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT------FDDVVWNVSWSL-----TG---D 202 (271)
Q Consensus 137 ~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------h~~~v~~v~~~~-----~g---~ 202 (271)
+....++|++++.+. =-++|.|..+|.+.|.|+|.+.......+.. ....+.++.|.. |+ -
T Consensus 82 ~~~~~g~vtal~~S~-----iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 82 LDAKQGPVTALKNSD-----IGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp E---S-SEEEEEE-B-----TSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred eeccCCcEeEEecCC-----CcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence 666789999999985 4699999999999999998876432223333 234688888883 22 4
Q ss_pred EEEEEECCCcEEEEEeC--CCCcee
Q psy13856 203 ILTVSCGDNSVSLWKEN--TDGAWQ 225 (271)
Q Consensus 203 ~l~s~s~D~~v~iw~~~--~~~~~~ 225 (271)
.|++|...|.+.+|++. .++.|.
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~f~ 181 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGRFS 181 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-EE
T ss_pred EEEEEeCCCCEEEEEEecCCCCceE
Confidence 68899999999999885 334454
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.023 Score=51.81 Aligned_cols=95 Identities=11% Similarity=0.125 Sum_probs=64.4
Q ss_pred CCeEEEEeCCCcEEEEEeecCCCCceeeccce---eeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEE
Q psy13856 76 LNRSATSSFHEAAKHLGTVQSSSPACLQPKYF---KLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDV 147 (271)
Q Consensus 76 ~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v 147 (271)
+..++.|+....+-.+|. ++.+..+...+ ...+....++.+. |+|.+.+...++.++++..|.+.|.++
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl---~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDf 223 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDL---NTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDF 223 (1118)
T ss_pred Ccceeecchhhheeeeec---ccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeee
Confidence 345555655555557887 55555444422 2344444455555 888885556668999999999999887
Q ss_pred EEccCCCCCCcEEEEEeC---------CCeEEEEEcCCCce
Q psy13856 148 AWAPSWGLSKCMIASCSQ---------DRKVIIWTSNDYVT 179 (271)
Q Consensus 148 ~~~p~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~ 179 (271)
.. .|+.|++||. |..|+|||+++.+.
T Consensus 224 Dv------~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra 258 (1118)
T KOG1275|consen 224 DV------QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA 258 (1118)
T ss_pred ec------cCCeEEEeecccccccccccchhhhhhhhhhhc
Confidence 65 4789999985 55689999998654
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=96.46 E-value=0.015 Score=32.96 Aligned_cols=31 Identities=26% Similarity=0.531 Sum_probs=27.8
Q ss_pred CcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcC
Q psy13856 141 SDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSN 175 (271)
Q Consensus 141 ~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 175 (271)
...|..++|+| ..++||.+..||.|.++.+.
T Consensus 11 ~~~v~~~~w~P----~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCP----TMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECC----CCCEEEEEECCCeEEEEECC
Confidence 45689999999 58999999999999999984
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.47 Score=40.24 Aligned_cols=69 Identities=7% Similarity=0.024 Sum_probs=44.9
Q ss_pred CcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCC-CeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 157 KCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDD-VVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
+..+..++.||.+..+|..+++. ......... ....... .+..+++++.||.|+++|..++ +.+.+++.
T Consensus 279 ~~~vyv~~~~G~l~~~d~~tG~~--~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG---~~~~~~~~ 348 (377)
T TIGR03300 279 DNRLYVTDADGVVVALDRRSGSE--LWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDG---SFVARLKT 348 (377)
T ss_pred CCEEEEECCCCeEEEEECCCCcE--EEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCC---CEEEEEEc
Confidence 56777788899999999988764 222211111 1111111 3678889999999999998877 45555543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.0043 Score=56.31 Aligned_cols=122 Identities=15% Similarity=0.049 Sum_probs=84.4
Q ss_pred eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceE
Q psy13856 53 ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWI 132 (271)
Q Consensus 53 ~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~ 132 (271)
.+.++.|... -++++|+-+.++|+.|+..|.|++++.. ++ .
T Consensus 1094 w~~frd~~~~----fTc~afs~~~~hL~vG~~~Geik~~nv~---------------------------------sG--~ 1134 (1516)
T KOG1832|consen 1094 WRSFRDETAL----FTCIAFSGGTNHLAVGSHAGEIKIFNVS---------------------------------SG--S 1134 (1516)
T ss_pred chhhhccccc----eeeEEeecCCceEEeeeccceEEEEEcc---------------------------------Cc--c
Confidence 5566777777 7899999999999999999999999982 23 3
Q ss_pred EeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCC--eEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC
Q psy13856 133 EETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDR--KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD 210 (271)
Q Consensus 133 ~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D 210 (271)
......+|.++|+-+.-+. ||..+++.+.-. -..+|++...... ...+ ..-.++.|+.....-+.|..-
T Consensus 1135 ~e~s~ncH~SavT~vePs~----dgs~~Ltsss~S~PlsaLW~~~s~~~~-~Hsf----~ed~~vkFsn~~q~r~~gt~~ 1205 (1516)
T KOG1832|consen 1135 MEESVNCHQSAVTLVEPSV----DGSTQLTSSSSSSPLSALWDASSTGGP-RHSF----DEDKAVKFSNSLQFRALGTEA 1205 (1516)
T ss_pred ccccccccccccccccccC----CcceeeeeccccCchHHHhccccccCc-cccc----cccceeehhhhHHHHHhcccc
Confidence 3445567999999998777 677666555433 4678998763210 1222 233567787664444445444
Q ss_pred CcEEEEEeCCCC
Q psy13856 211 NSVSLWKENTDG 222 (271)
Q Consensus 211 ~~v~iw~~~~~~ 222 (271)
....+||+.++.
T Consensus 1206 d~a~~YDvqT~~ 1217 (1516)
T KOG1832|consen 1206 DDALLYDVQTCS 1217 (1516)
T ss_pred cceEEEecccCc
Confidence 568899998773
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.29 Score=45.23 Aligned_cols=69 Identities=12% Similarity=0.130 Sum_probs=52.1
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEe
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~ 218 (271)
....|++-.. .-+||.|+.+|.||+||.-..+. ...+.+...+|..|+.+.||+++++.+ +..|.+++.
T Consensus 578 ~~Fs~~aTt~-----~G~iavgs~~G~IRLyd~~g~~A--KT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 578 NNFSCFATTE-----DGYIAVGSNKGDIRLYDRLGKRA--KTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CCceEEEecC-----CceEEEEeCCCcEEeecccchhh--hhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 3455665554 56899999999999999543221 445667789999999999999988777 456777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.46 Score=43.49 Aligned_cols=157 Identities=11% Similarity=-0.058 Sum_probs=95.5
Q ss_pred CCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCC-CeEEEEeCCCc-----EEEEEeecCCCCcee
Q psy13856 33 RIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKL-NRSATSSFHEA-----AKHLGTVQSSSPACL 102 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~-~~l~s~s~d~~-----i~~~d~~~~~~~~~~ 102 (271)
+++..++.|+.||.|.+.+- ++.++.+... +...-+.-++ ++|++.+.|+. +++|++. ....-
T Consensus 33 s~~~~vvigt~~G~V~~Ln~s~~~~~~fqa~~~s----iv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~le---k~~~n 105 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNSSFQLIRGFQAYEQS----IVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLE---KVDKN 105 (933)
T ss_pred CCCceEEEeeccccEEEecccceeeehheecchh----hhhHhhcccCceEEEEEeecCCCCceEEEEeccc---ccCCC
Confidence 46778999999999999987 3555665554 4333344344 68888877654 7889873 11100
Q ss_pred eccceeeEEEeeccceeeeEEEEeeCCceEEeE-EecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc--e
Q psy13856 103 QPKYFKLTVYSTKLTRILILVRICGGDKWIEET-KLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV--T 179 (271)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~-~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~--~ 179 (271)
.. |.+. +.+++ .. .......++.+++.+. +-..+|.|-.+|.|..+.-.-.+ .
T Consensus 106 ~s---P~c~---------~~~ri--------~~~~np~~~~p~s~l~Vs~----~l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 106 NS---PQCL---------YEHRI--------FTIKNPTNPSPASSLAVSE----DLKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred CC---ccee---------eeeee--------eccCCCCCCCcceEEEEEc----cccEEEEEecCcEEEEEcCcchhccc
Confidence 00 0000 00111 00 0011346778888888 57899999999999988643221 1
Q ss_pred eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 180 WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 180 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
........-.++|+.+++..++..++-...-..|.+|.+..
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~g 202 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSG 202 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecC
Confidence 11223344467999999999887633333456799999873
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.0018 Score=56.36 Aligned_cols=143 Identities=12% Similarity=0.119 Sum_probs=86.7
Q ss_pred CCCEEEEcc----CCCeEEeccce---------eeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 34 IGHTLISCD----TQAHIGIRSTI---------SLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 34 ~g~~l~s~s----~d~~i~lwd~~---------~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
|...||+|- .|..+.|||.- ..+.+ .......++.|-.+.+.+.+|.....+.++|+++
T Consensus 114 Dtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~---~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq----- 185 (783)
T KOG1008|consen 114 DTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSS---STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ----- 185 (783)
T ss_pred cHHHHHhhhhhhcccCCccceecccccCCCcccccccc---ccccCccccccccCcchhhcccccchhhhhhhhh-----
Confidence 445566652 45689999981 11111 0122255677777878888888888888888731
Q ss_pred eeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEE-cCCCce
Q psy13856 101 CLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT-SNDYVT 179 (271)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd-~~~~~~ 179 (271)
.+.....-.+..+..+..+|- .+.|+++-. ||.|.+|| .++-+.
T Consensus 186 -------------------------------s~~~~~svnTk~vqG~tVdp~---~~nY~cs~~-dg~iAiwD~~rnien 230 (783)
T KOG1008|consen 186 -------------------------------SLDSVSSVNTKYVQGITVDPF---SPNYFCSNS-DGDIAIWDTYRNIEN 230 (783)
T ss_pred -------------------------------hhhhhhhhhhhhcccceecCC---CCCceeccc-cCceeeccchhhhcc
Confidence 111111112345666777774 467888777 99999999 554433
Q ss_pred eeeeeeccCC----CCeEEEEEecCC-CEEEEEEC-CCcEEEEEeCC
Q psy13856 180 WTPFIMNTFD----DVVWNVSWSLTG-DILTVSCG-DNSVSLWKENT 220 (271)
Q Consensus 180 ~~~~~~~~h~----~~v~~v~~~~~g-~~l~s~s~-D~~v~iw~~~~ 220 (271)
. ...+...+ ..+..++|+|.. ..+++.+. .++|+.+++..
T Consensus 231 p-l~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 231 P-LQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred H-HHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 1 22222222 348999999952 34555554 57899999853
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.47 Score=37.12 Aligned_cols=174 Identities=9% Similarity=-0.067 Sum_probs=92.6
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
.....+.+++..+++++.++.|..||. +..... ... +.... ..++..++.++.++.++.+|. .+++
T Consensus 27 ~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~----~~~~~-~~~~~~v~v~~~~~~l~~~d~---~tG~ 97 (238)
T PF13360_consen 27 GPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGP----ISGAP-VVDGGRVYVGTSDGSLYALDA---KTGK 97 (238)
T ss_dssp SEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSC----GGSGE-EEETTEEEEEETTSEEEEEET---TTSC
T ss_pred CccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccc----cccee-eecccccccccceeeeEeccc---CCcc
Confidence 333335556777777788899999997 222222 111 11111 223456666778888888887 6666
Q ss_pred eeecc-c--------eeeEEEeeccceee-----eEEEE--eeCCceEEeEEecCCCcc----e-------EEEEEccCC
Q psy13856 101 CLQPK-Y--------FKLTVYSTKLTRIL-----ILVRI--CGGDKWIEETKLENHSDW----V-------RDVAWAPSW 153 (271)
Q Consensus 101 ~~~~~-~--------~~~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~----v-------~~v~~~p~~ 153 (271)
.+... . .........+..+. +.+.. ..++ +.+......... + ..+.+.
T Consensus 98 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG--~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~--- 172 (238)
T PF13360_consen 98 VLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG--KLLWKYPVGEPRGSSPISSFSDINGSPVIS--- 172 (238)
T ss_dssp EEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT--EEEEEEESSTT-SS--EEEETTEEEEEECC---
T ss_pred eeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC--cEEEEeecCCCCCCcceeeecccccceEEE---
Confidence 65542 1 01111222233333 33444 3556 444444333211 1 222222
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 154 GLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 154 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
++ .+..++.++.+..+|..+++. ..... ...+.. ....++..|+.++.++.|..||++++
T Consensus 173 --~~-~v~~~~~~g~~~~~d~~tg~~--~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG 232 (238)
T PF13360_consen 173 --DG-RVYVSSGDGRVVAVDLATGEK--LWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDLKTG 232 (238)
T ss_dssp --TT-EEEEECCTSSEEEEETTTTEE--EEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEETTTT
T ss_pred --CC-EEEEEcCCCeEEEEECCCCCE--EEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEECCCC
Confidence 24 666666677544349998873 21111 222222 13467788888889999999999987
|
... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.59 Score=39.18 Aligned_cols=67 Identities=12% Similarity=0.045 Sum_probs=48.7
Q ss_pred EccCCCCCCcEEEEEeC----------CCeEEEEEcCCCceeeeeeecc----C---CCCeEEEEEecCCCEEEEEE-C-
Q psy13856 149 WAPSWGLSKCMIASCSQ----------DRKVIIWTSNDYVTWTPFIMNT----F---DDVVWNVSWSLTGDILTVSC-G- 209 (271)
Q Consensus 149 ~~p~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~----h---~~~v~~v~~~~~g~~l~s~s-~- 209 (271)
++| |+..+..+.. +..|.+||..+.+. ...+.- + ......++++|||++|+... .
T Consensus 53 ~sp----Dg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~--~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p 126 (352)
T TIGR02658 53 VAS----DGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP--IADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSP 126 (352)
T ss_pred ECC----CCCEEEEEeccccccccCCCCCEEEEEECccCcE--EeEEccCCCchhhccCccceEEECCCCCEEEEecCCC
Confidence 888 5666655554 78999999999875 333321 1 22345789999999998776 3
Q ss_pred CCcEEEEEeCCC
Q psy13856 210 DNSVSLWKENTD 221 (271)
Q Consensus 210 D~~v~iw~~~~~ 221 (271)
+..|.+.|+.++
T Consensus 127 ~~~V~VvD~~~~ 138 (352)
T TIGR02658 127 SPAVGVVDLEGK 138 (352)
T ss_pred CCEEEEEECCCC
Confidence 789999999877
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.025 Score=43.35 Aligned_cols=63 Identities=8% Similarity=0.079 Sum_probs=46.1
Q ss_pred CCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCC-CCeEEEEEecCCCEEEEE--ECCCcEEEEEeCC
Q psy13856 156 SKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFD-DVVWNVSWSLTGDILTVS--CGDNSVSLWKENT 220 (271)
Q Consensus 156 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~-~~v~~v~~~~~g~~l~s~--s~D~~v~iw~~~~ 220 (271)
++.+..+++.||.++.|+....+. .-....|. .++.....+..+.+++.+ |.|..++.|++..
T Consensus 113 ~~~~~c~~~~dg~ir~~n~~p~k~--~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 113 DSSLGCVGAQDGRIRACNIKPNKV--LGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccceeEEeccCCceeeeccccCce--eeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 566889999999999999987764 33444555 455555566667777777 7788888888754
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.17 Score=43.74 Aligned_cols=60 Identities=12% Similarity=0.164 Sum_probs=47.2
Q ss_pred CCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEe
Q psy13856 156 SKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 156 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~ 218 (271)
..-+|+.||.+|.|++||.-.... ...+.+...+|..|..+.+|.+++..+ +..+.+.+.
T Consensus 440 ~sG~IvvgS~~GdIRLYdri~~~A--KTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 440 ESGYIVVGSLKGDIRLYDRIGRRA--KTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred CCceEEEeecCCcEEeehhhhhhh--hhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 356999999999999999843332 446788889999999999999988776 455666655
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.049 Score=48.30 Aligned_cols=106 Identities=11% Similarity=0.058 Sum_probs=75.5
Q ss_pred CCCCEEEEccCCCeEEeccc----eeeec--cccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccc
Q psy13856 33 RIGHTLISCDTQAHIGIRST----ISLLQ--GSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKY 106 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~----~~~~~--~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~ 106 (271)
..+.+++.|+.-|.+.+|+- +..++ +..+. +..+..+++..++|.|+..|.|.++-+. ....-.
T Consensus 43 st~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~----~~~~~vs~~e~lvAagt~~g~V~v~ql~---~~~p~~--- 112 (726)
T KOG3621|consen 43 ATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGI----TCVRSVSSVEYLVAAGTASGRVSVFQLN---KELPRD--- 112 (726)
T ss_pred cCCceEEEecccceEEEEecCchhhhcccccCccce----EEEEEecchhHhhhhhcCCceEEeehhh---ccCCCc---
Confidence 36789999999999999997 22222 23344 5677789998999999999999776652 111100
Q ss_pred eeeEEEeeccceeeeEEEEeeCCceEEeEEe-cCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC
Q psy13856 107 FKLTVYSTKLTRILILVRICGGDKWIEETKL-ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 107 ~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 176 (271)
...+... +.|...|++++|++ ++..+.+|...|+|..-.+..
T Consensus 113 ------------------------~~~~t~~d~~~~~rVTal~Ws~----~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 113 ------------------------LDYVTPCDKSHKCRVTALEWSK----NGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ------------------------ceeeccccccCCceEEEEEecc----cccEEeecCCCceEEEEEech
Confidence 0111111 23888999999999 699999999999988777665
|
|
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.031 Score=42.87 Aligned_cols=88 Identities=11% Similarity=-0.038 Sum_probs=49.3
Q ss_pred ceeEEeeceeEeecccccc-ceeccc-------CCCCCCCEEEEccCCCeEEeccceeeecccccc---ccccc-eEEEE
Q psy13856 5 EWLLVSCDGLLMTLKPTLE-IETYTE-------SPLRIGHTLISCDTQAHIGIRSTISLLQGSVYL---RRESN-KAGAL 72 (271)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~~~-------~~~~~g~~l~s~s~d~~i~lwd~~~~~~~h~~~---~~~~i-~~~~~ 72 (271)
-++..++||.+-+.+.... ....++ ....-+.-++.|+.||.|.+|..- .+..|... ....| ..+.-
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n-~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRVVTASAKLMVGTSDGAVYVFNWN-LEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhcceeecccCceEEeecccceEEEecCC-ccchHHHhhhcccccceecccc
Confidence 3556678888877643211 111111 111345568889999999999871 01112111 00001 12333
Q ss_pred cCCCCeEEEEeCCCcEEEEEe
Q psy13856 73 SPKLNRSATSSFHEAAKHLGT 93 (271)
Q Consensus 73 s~~~~~l~s~s~d~~i~~~d~ 93 (271)
..++.+..+++.|+.||.|..
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~ 131 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNI 131 (238)
T ss_pred ccccceeEEeccCCceeeecc
Confidence 345668889999999999987
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.87 Score=41.09 Aligned_cols=83 Identities=16% Similarity=0.288 Sum_probs=55.6
Q ss_pred EEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC------Cceee-e--eeeccCC-CCeEEEEEecCC
Q psy13856 132 IEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND------YVTWT-P--FIMNTFD-DVVWNVSWSLTG 201 (271)
Q Consensus 132 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~------~~~~~-~--~~~~~h~-~~v~~v~~~~~g 201 (271)
+....+ ...+.|.++.|.... +++.+++.|....|.+|.-.. ...|. + ..+..|+ .+|.+..|-++|
T Consensus 64 E~~~~f-~~~~~I~dLDWtst~--d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G 140 (631)
T PF12234_consen 64 EYEESF-SEDDPIRDLDWTSTP--DGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDG 140 (631)
T ss_pred EEeeee-cCCCceeeceeeecC--CCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCC
Confidence 333444 456889999998543 789999999999999986521 11111 1 1234454 579999999998
Q ss_pred CEEEEEECCCcEEEEEeC
Q psy13856 202 DILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 202 ~~l~s~s~D~~v~iw~~~ 219 (271)
.+++.+ ++.+.|++-.
T Consensus 141 ~LvV~s--GNqlfv~dk~ 156 (631)
T PF12234_consen 141 TLVVGS--GNQLFVFDKW 156 (631)
T ss_pred eEEEEe--CCEEEEECCC
Confidence 766554 4678888743
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=95.76 E-value=0.014 Score=53.15 Aligned_cols=85 Identities=14% Similarity=0.163 Sum_probs=70.1
Q ss_pred eEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC
Q psy13856 131 WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD 210 (271)
Q Consensus 131 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D 210 (271)
++..+++..|....+|++|+- +.+.|+.|+..|.|+++++.++.. ......|.++|+.+.-+.+|..+++.+.-
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~----~~~hL~vG~~~Geik~~nv~sG~~--e~s~ncH~SavT~vePs~dgs~~Ltsss~ 1164 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG----GTNHLAVGSHAGEIKIFNVSSGSM--EESVNCHQSAVTLVEPSVDGSTQLTSSSS 1164 (1516)
T ss_pred cccchhhhccccceeeEEeec----CCceEEeeeccceEEEEEccCccc--cccccccccccccccccCCcceeeeeccc
Confidence 455566778888999999998 689999999999999999999875 66788999999999988899887766553
Q ss_pred C--cEEEEEeCCC
Q psy13856 211 N--SVSLWKENTD 221 (271)
Q Consensus 211 ~--~v~iw~~~~~ 221 (271)
. -..+|+..+.
T Consensus 1165 S~PlsaLW~~~s~ 1177 (1516)
T KOG1832|consen 1165 SSPLSALWDASST 1177 (1516)
T ss_pred cCchHHHhccccc
Confidence 3 4678988653
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.91 Score=37.20 Aligned_cols=151 Identities=10% Similarity=0.084 Sum_probs=77.5
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
......+||++++.++.-....-||. ...+..|.......|.++.|+|++...+.+ ..+.++.=+.. .
T Consensus 148 ~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~--~-------- 216 (302)
T PF14870_consen 148 NDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDP--D-------- 216 (302)
T ss_dssp EEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-T--T--------
T ss_pred EeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCC--C--------
Confidence 33444579998888888555667887 444555554444458999999998765544 88888665520 0
Q ss_pred ceeeEEEeeccceeeeEEEEeeCCceEE-eEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeee
Q psy13856 106 YFKLTVYSTKLTRILILVRICGGDKWIE-ETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFI 184 (271)
Q Consensus 106 ~~~~~~~~~~~~~l~~~v~i~~~~~~~~-~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 184 (271)
....|.. +.....-.-.+..++|.+ +....++|+ .|. .+.....++.|....
T Consensus 217 ---------------------~~~~w~~~~~~~~~~~~~~ld~a~~~----~~~~wa~gg-~G~-l~~S~DgGktW~~~~ 269 (302)
T PF14870_consen 217 ---------------------DGETWSEPIIPIKTNGYGILDLAYRP----PNEIWAVGG-SGT-LLVSTDGGKTWQKDR 269 (302)
T ss_dssp ---------------------EEEEE---B-TTSS--S-EEEEEESS----SS-EEEEES-TT--EEEESSTTSS-EE-G
T ss_pred ---------------------CccccccccCCcccCceeeEEEEecC----CCCEEEEeC-Ccc-EEEeCCCCccceECc
Confidence 0001111 111111223478899998 567777666 454 345667777764332
Q ss_pred -eccCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q psy13856 185 -MNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216 (271)
Q Consensus 185 -~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw 216 (271)
...-...++.+.|.++.+-++.| .+|.|--|
T Consensus 270 ~~~~~~~n~~~i~f~~~~~gf~lG-~~G~ll~~ 301 (302)
T PF14870_consen 270 VGENVPSNLYRIVFVNPDKGFVLG-QDGVLLRY 301 (302)
T ss_dssp GGTTSSS---EEEEEETTEEEEE--STTEEEEE
T ss_pred cccCCCCceEEEEEcCCCceEEEC-CCcEEEEe
Confidence 22345678999998765555555 57766544
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.84 Score=35.65 Aligned_cols=70 Identities=13% Similarity=0.024 Sum_probs=43.6
Q ss_pred CcEEEEEeCCCeEEEEEcCCCceeeeee-eccC--C-CCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEec
Q psy13856 157 KCMIASCSQDRKVIIWTSNDYVTWTPFI-MNTF--D-DVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~h--~-~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
+..++.+..|+.++.+|..+++. ... .... . ...........+..++.+..++.|..+|++++ +.+.+..
T Consensus 76 ~~~v~v~~~~~~l~~~d~~tG~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~ 149 (238)
T PF13360_consen 76 GGRVYVGTSDGSLYALDAKTGKV--LWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYP 149 (238)
T ss_dssp TTEEEEEETTSEEEEEETTTSCE--EEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEE
T ss_pred ccccccccceeeeEecccCCcce--eeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEee
Confidence 45556666788999999888875 222 1111 1 11222233334788888888999999999887 4444443
|
... |
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=95.57 E-value=1.3 Score=37.85 Aligned_cols=58 Identities=9% Similarity=-0.062 Sum_probs=37.9
Q ss_pred CcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEE-EEEecCCCEEEEEECCCcEEEEEe
Q psy13856 157 KCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWN-VSWSLTGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~-v~~~~~g~~l~s~s~D~~v~iw~~ 218 (271)
+.+++.++.||.+.+.|..+++. .....-....+.+ -.+ .+..|+.++.||.|+.+++
T Consensus 335 ~g~l~v~~~~G~l~~ld~~tG~~--~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 335 NGYLVVGDSEGYLHWINREDGRF--VAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CCEEEEEeCCCEEEEEECCCCCE--EEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 45777889999999999999875 2332222222221 111 2457888899999988764
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=95.50 E-value=0.84 Score=36.11 Aligned_cols=68 Identities=7% Similarity=0.087 Sum_probs=49.1
Q ss_pred CcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCe-EEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEe
Q psy13856 157 KCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVV-WNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v-~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 230 (271)
+++++.|+..|.+++.+..++.. ...+..- +.| .+....+++..+..++.|++.+..|+.+. .++...
T Consensus 63 gdfVV~GCy~g~lYfl~~~tGs~--~w~f~~~-~~vk~~a~~d~~~glIycgshd~~~yalD~~~~---~cVyks 131 (354)
T KOG4649|consen 63 GDFVVLGCYSGGLYFLCVKTGSQ--IWNFVIL-ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY---GCVYKS 131 (354)
T ss_pred CCEEEEEEccCcEEEEEecchhh--eeeeeeh-hhhccceEEcCCCceEEEecCCCcEEEeccccc---ceEEec
Confidence 67899999999999999999854 2222211 122 23345778999999999999999998865 444443
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.34 Score=43.54 Aligned_cols=69 Identities=13% Similarity=0.288 Sum_probs=39.7
Q ss_pred CcEEEEEeCC------CeEEEEEcCCCceee-eeeeccCCCCeEEEEEecCCCEEEEEECCC--cEEEEEeCCCCceeEE
Q psy13856 157 KCMIASCSQD------RKVIIWTSNDYVTWT-PFIMNTFDDVVWNVSWSLTGDILTVSCGDN--SVSLWKENTDGAWQCI 227 (271)
Q Consensus 157 ~~~l~s~~~d------g~i~iwd~~~~~~~~-~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~--~v~iw~~~~~~~~~~~ 227 (271)
+.+.+.|+.+ ..+..||..+...|. ...+.........+. -+|.+.++|+.|+ .+..||+.++ +|..+
T Consensus 464 ~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd~~~~-~W~~~ 540 (557)
T PHA02713 464 DDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFNVYTY-EWNHI 540 (557)
T ss_pred CEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcCcccc-cccch
Confidence 5666667654 246788888722232 222222222222222 2678889999888 7888887754 67654
Q ss_pred E
Q psy13856 228 T 228 (271)
Q Consensus 228 ~ 228 (271)
.
T Consensus 541 ~ 541 (557)
T PHA02713 541 C 541 (557)
T ss_pred h
Confidence 3
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.23 E-value=1.9 Score=38.76 Aligned_cols=76 Identities=9% Similarity=0.004 Sum_probs=53.3
Q ss_pred CCcceEEEEEccCCCCCCcEEEEEe-CCCeEEEEEcCCCceee----------eeeeccCCCCeEEEEEecCCCEEEEEE
Q psy13856 140 HSDWVRDVAWAPSWGLSKCMIASCS-QDRKVIIWTSNDYVTWT----------PFIMNTFDDVVWNVSWSLTGDILTVSC 208 (271)
Q Consensus 140 h~~~v~~v~~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~----------~~~~~~h~~~v~~v~~~~~g~~l~s~s 208 (271)
-....+.+.++| ||.+++.++ .+.++.+.|+.+.+.+. .....- ...-...+|.++|....+-.
T Consensus 319 VGKsPHGV~vSP----DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G~aytslf 393 (635)
T PRK02888 319 VPKNPHGVNTSP----DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLF 393 (635)
T ss_pred CCCCccceEECC----CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCCCEEEeEe
Confidence 345567899999 688776555 58999999998744200 111111 22344678999998888888
Q ss_pred CCCcEEEEEeCC
Q psy13856 209 GDNSVSLWKENT 220 (271)
Q Consensus 209 ~D~~v~iw~~~~ 220 (271)
-|..|..|++..
T Consensus 394 ~dsqv~kwn~~~ 405 (635)
T PRK02888 394 LDSQIVKWNIEA 405 (635)
T ss_pred ecceeEEEehHH
Confidence 899999999864
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.04 E-value=2.1 Score=37.06 Aligned_cols=165 Identities=17% Similarity=0.071 Sum_probs=83.1
Q ss_pred ecccCCCCCCCEEEEc---cCC-CeEEeccc-------eeeeccccccccccceEEEEcCCCCeEE-EEeCCCcEEE--E
Q psy13856 26 TYTESPLRIGHTLISC---DTQ-AHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSA-TSSFHEAAKH--L 91 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~---s~d-~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~-s~s~d~~i~~--~ 91 (271)
.......+++..++-. ... ..+.++++ +..+.++. ..-+|+|||++|+ +...|+...+ .
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~-------~~P~fspDG~~l~f~~~rdg~~~iy~~ 267 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN-------GAPAFSPDGSKLAFSSSRDGSPDIYLM 267 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc-------CCccCCCCCCEEEEEECCCCCccEEEE
Confidence 3444445666653333 222 35777776 22223333 3468999999665 4556666554 4
Q ss_pred EeecCCCCceeecc---ce-eeEEEeeccceee--------eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCc
Q psy13856 92 GTVQSSSPACLQPK---YF-KLTVYSTKLTRIL--------ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158 (271)
Q Consensus 92 d~~~~~~~~~~~~~---~~-~~~~~~~~~~~l~--------~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 158 (271)
|+ ..+...+.. .. ....++++|+.++ ..|.+ ..++ ...+.+......-..-.|+| ||.
T Consensus 268 dl---~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g--~~~~riT~~~~~~~~p~~Sp----dG~ 338 (425)
T COG0823 268 DL---DGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEG--SQVTRLTFSGGGNSNPVWSP----DGD 338 (425)
T ss_pred cC---CCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCC--CceeEeeccCCCCcCccCCC----CCC
Confidence 55 333322211 11 3456777788877 23333 2222 11222222222222666788 788
Q ss_pred EEEEEeCC-Ce--EEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEEC
Q psy13856 159 MIASCSQD-RK--VIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG 209 (271)
Q Consensus 159 ~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 209 (271)
+|+..+.. |. |.+.|..++..+ .. .........-.|.++|..+...+.
T Consensus 339 ~i~~~~~~~g~~~i~~~~~~~~~~~--~~-lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 339 KIVFESSSGGQWDIDKNDLASGGKI--RI-LTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred EEEEEeccCCceeeEEeccCCCCcE--EE-ccccccCCCCCcCCCCceEEEecc
Confidence 88877753 44 666666555421 11 112222334456777776655544
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.12 Score=28.47 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=26.1
Q ss_pred CCeEEEEEecCC---CEEEEEECCCcEEEEEeCC
Q psy13856 190 DVVWNVSWSLTG---DILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 190 ~~v~~v~~~~~g---~~l~s~s~D~~v~iw~~~~ 220 (271)
+++.++.|+|.+ .+|+.+-.-+.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 478999999854 5888888889999999985
|
It contains a characteristic DLL sequence motif. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.84 E-value=1 Score=40.49 Aligned_cols=34 Identities=24% Similarity=0.319 Sum_probs=22.8
Q ss_pred CCCEEEEEECC------CcEEEEEeCCCCceeEEEEeccc
Q psy13856 200 TGDILTVSCGD------NSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 200 ~g~~l~s~s~D------~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
++.+.+.|+.+ ..+..||+.++.+|..+..+...
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~ 502 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR 502 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc
Confidence 56777777654 24678998864579877766543
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.21 Score=46.73 Aligned_cols=72 Identities=18% Similarity=0.188 Sum_probs=53.0
Q ss_pred CCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCe---EEEEEecCCCEEEEEECCCcEEEE
Q psy13856 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVV---WNVSWSLTGDILTVSCGDNSVSLW 216 (271)
Q Consensus 140 h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v---~~v~~~~~g~~l~s~s~D~~v~iw 216 (271)
-.++|++++|+. +|..++.|-.+|.|.+||+..++. .+.+..|..++ .-+.+..++..++++..-|. +|
T Consensus 129 v~~~Vtsvafn~----dg~~l~~G~~~G~V~v~D~~~~k~--l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~ 200 (1206)
T KOG2079|consen 129 VQGPVTSVAFNQ----DGSLLLAGLGDGHVTVWDMHRAKI--LKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FW 200 (1206)
T ss_pred cCCcceeeEecC----CCceeccccCCCcEEEEEccCCcc--eeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eE
Confidence 357899999998 799999999999999999999776 45454454444 44445556666777766665 56
Q ss_pred EeC
Q psy13856 217 KEN 219 (271)
Q Consensus 217 ~~~ 219 (271)
++.
T Consensus 201 ~lv 203 (1206)
T KOG2079|consen 201 KLV 203 (1206)
T ss_pred EEE
Confidence 653
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.66 E-value=1.8 Score=37.39 Aligned_cols=152 Identities=14% Similarity=0.071 Sum_probs=81.8
Q ss_pred ceEEEEcCCCCeEEEEe---CC-CcEEEEEeecCCCCceeeccce-eeEEEeeccceee------e--EEEE-eeCCceE
Q psy13856 67 NKAGALSPKLNRSATSS---FH-EAAKHLGTVQSSSPACLQPKYF-KLTVYSTKLTRIL------I--LVRI-CGGDKWI 132 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s---~d-~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~l~------~--~v~i-~~~~~~~ 132 (271)
+..-+|+|++..++-.+ .. ..+.++++..+........... ....+++++++++ + .+.+ +-.+ +
T Consensus 195 ~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~--~ 272 (425)
T COG0823 195 ILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDG--K 272 (425)
T ss_pred eeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCC--C
Confidence 56678999988655442 22 3577888844333333332222 4455777788777 2 2333 2222 1
Q ss_pred EeEEecCCCcceEEEEEccCCCCCCcEEEEEe-CCCeEEEE--EcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEEC
Q psy13856 133 EETKLENHSDWVRDVAWAPSWGLSKCMIASCS-QDRKVIIW--TSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG 209 (271)
Q Consensus 133 ~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~-~dg~i~iw--d~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 209 (271)
....+..-.+.-..=.|+| ||.+++-.+ ..|.-.|| +.+... ...+......-..-.|+|+|++++..+.
T Consensus 273 ~~~~Lt~~~gi~~~Ps~sp----dG~~ivf~Sdr~G~p~I~~~~~~g~~---~~riT~~~~~~~~p~~SpdG~~i~~~~~ 345 (425)
T COG0823 273 NLPRLTNGFGINTSPSWSP----DGSKIVFTSDRGGRPQIYLYDLEGSQ---VTRLTFSGGGNSNPVWSPDGDKIVFESS 345 (425)
T ss_pred cceecccCCccccCccCCC----CCCEEEEEeCCCCCcceEEECCCCCc---eeEeeccCCCCcCccCCCCCCEEEEEec
Confidence 1222333333333566777 677765544 45654555 444433 2222222222226779999999888775
Q ss_pred C-Cc--EEEEEeCCCCceeEE
Q psy13856 210 D-NS--VSLWKENTDGAWQCI 227 (271)
Q Consensus 210 D-~~--v~iw~~~~~~~~~~~ 227 (271)
. |. |.+.++.++..|..+
T Consensus 346 ~~g~~~i~~~~~~~~~~~~~l 366 (425)
T COG0823 346 SGGQWDIDKNDLASGGKIRIL 366 (425)
T ss_pred cCCceeeEEeccCCCCcEEEc
Confidence 3 44 677777666544443
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.15 Score=46.57 Aligned_cols=71 Identities=13% Similarity=0.146 Sum_probs=57.1
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEE
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRD 146 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~ 146 (271)
+.+++|+|..-.|+.|-.-|-+.+|.. .+. +.......|..+|..
T Consensus 62 atSLCWHpe~~vLa~gwe~g~~~v~~~---------------------------------~~~--e~htv~~th~a~i~~ 106 (1416)
T KOG3617|consen 62 ATSLCWHPEEFVLAQGWEMGVSDVQKT---------------------------------NTT--ETHTVVETHPAPIQG 106 (1416)
T ss_pred hhhhccChHHHHHhhccccceeEEEec---------------------------------CCc--eeeeeccCCCCCcee
Confidence 457889998778888878888877776 112 344445679999999
Q ss_pred EEEccCCCCCCcEEEEEeCCCeEEEEEcCC
Q psy13856 147 VAWAPSWGLSKCMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 147 v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 176 (271)
+.|+| +|..++++..-|.+.+|....
T Consensus 107 l~wS~----~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 107 LDWSH----DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred EEecC----CCCeEEEcCCCceeEEEEeee
Confidence 99999 799999999999999998863
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.19 Score=27.74 Aligned_cols=32 Identities=19% Similarity=0.249 Sum_probs=26.8
Q ss_pred cceEEEEEccCCCCCC--cEEEEEeCCCeEEEEEcCC
Q psy13856 142 DWVRDVAWAPSWGLSK--CMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~--~~l~s~~~dg~i~iwd~~~ 176 (271)
+.|.++.|+|. .+ ++|+..=.-+.+.++|+++
T Consensus 1 GAvR~~kFsP~---~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPE---PGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCC---CCcccEEEEEccCCeEEEEEccc
Confidence 46889999986 45 7888888889999999995
|
It contains a characteristic DLL sequence motif. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.63 Score=43.12 Aligned_cols=97 Identities=11% Similarity=0.026 Sum_probs=63.8
Q ss_pred EEEEccCCCeEEeccc-ee---ee--ccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeE
Q psy13856 37 TLISCDTQAHIGIRST-IS---LL--QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLT 110 (271)
Q Consensus 37 ~l~s~s~d~~i~lwd~-~~---~~--~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~ 110 (271)
..+.|-.++.+-.||. +. .. ..|....-....|++-+.+| +||.|+.+|.||+||-. +.
T Consensus 544 ~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~----g~---------- 608 (794)
T PF08553_consen 544 QTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL----GK---------- 608 (794)
T ss_pred ceEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc----ch----------
Confidence 3455556688889998 21 11 22222211224466666565 78999999999999952 11
Q ss_pred EEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEc
Q psy13856 111 VYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTS 174 (271)
Q Consensus 111 ~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~ 174 (271)
+....+.+-..+|..|..+. ||+|+++.+ +..+.+++.
T Consensus 609 ---------------------~AKT~lp~lG~pI~~iDvt~----DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 609 ---------------------RAKTALPGLGDPIIGIDVTA----DGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ---------------------hhhhcCCCCCCCeeEEEecC----CCcEEEEee-cceEEEEEE
Confidence 23344556779999999999 799887777 556777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.077 Score=49.45 Aligned_cols=72 Identities=18% Similarity=0.238 Sum_probs=54.4
Q ss_pred CcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEE
Q psy13856 157 KCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITE 229 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 229 (271)
+.+++.|+..|.+...|+...-.+ ...-..-.++|.+++|+.+|..++.|-.+|.|.+||...+...+.+..
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~-~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e 170 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGP-LHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE 170 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccch-hhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence 568899999999999998764321 111122356999999999999999999999999999987744444433
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=93.81 E-value=3.1 Score=34.00 Aligned_cols=136 Identities=7% Similarity=0.035 Sum_probs=85.7
Q ss_pred EEEEcC-CCCeEEEEeCCCcE-EEEEeecCCCCceeecc-------ceeeEEEeeccceee----------eEEEE-eeC
Q psy13856 69 AGALSP-KLNRSATSSFHEAA-KHLGTVQSSSPACLQPK-------YFKLTVYSTKLTRIL----------ILVRI-CGG 128 (271)
Q Consensus 69 ~~~~s~-~~~~l~s~s~d~~i-~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~----------~~v~i-~~~ 128 (271)
.++.+| .+..++.+-.-|+. .+||. .++...... ++...+|+.++++|. +.|-| +..
T Consensus 9 ~~a~~p~~~~avafaRRPG~~~~v~D~---~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~ 85 (305)
T PF07433_consen 9 GVAAHPTRPEAVAFARRPGTFALVFDC---RTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA 85 (305)
T ss_pred ceeeCCCCCeEEEEEeCCCcEEEEEEc---CCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence 566777 44555666555553 35676 444443222 557788999988877 77777 444
Q ss_pred CceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC------------------CCeEEEEEcCCCceeeeeee--ccC
Q psy13856 129 DKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ------------------DRKVIIWTSNDYVTWTPFIM--NTF 188 (271)
Q Consensus 129 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~------------------dg~i~iwd~~~~~~~~~~~~--~~h 188 (271)
..+..+.++..|.-.-..+.+.| |+..|+.+-. +-.+..-|..+++......+ .-|
T Consensus 86 ~~~~ri~E~~s~GIGPHel~l~p----DG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~ 161 (305)
T PF07433_consen 86 RGYRRIGEFPSHGIGPHELLLMP----DGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH 161 (305)
T ss_pred CCcEEEeEecCCCcChhhEEEcC----CCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc
Confidence 46688888888876677888999 6755555421 12244445555554333334 346
Q ss_pred CCCeEEEEEecCCCEEEEEECCC
Q psy13856 189 DDVVWNVSWSLTGDILTVSCGDN 211 (271)
Q Consensus 189 ~~~v~~v~~~~~g~~l~s~s~D~ 211 (271)
..++.-++++++|..++..-..+
T Consensus 162 ~lSiRHLa~~~~G~V~~a~Q~qg 184 (305)
T PF07433_consen 162 QLSIRHLAVDGDGTVAFAMQYQG 184 (305)
T ss_pred ccceeeEEecCCCcEEEEEecCC
Confidence 67889999999887766655443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=93.65 E-value=5.3 Score=36.12 Aligned_cols=62 Identities=10% Similarity=-0.054 Sum_probs=43.5
Q ss_pred CCcEEEEEeCCCeEEEEEcCC----CceeeeeeeccCCCCeEEEEEecCCCEEEEEEC-CCcEEEEEeCCC
Q psy13856 156 SKCMIASCSQDRKVIIWTSND----YVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG-DNSVSLWKENTD 221 (271)
Q Consensus 156 ~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-D~~v~iw~~~~~ 221 (271)
+|++... .++.|.+.|.++ +.. ...+-.-......+.++|||+++++++. +.+|.+.|+...
T Consensus 287 dGK~~~V--~gn~V~VID~~t~~~~~~~--v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~ 353 (635)
T PRK02888 287 AGKFKTI--GGSKVPVVDGRKAANAGSA--LTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL 353 (635)
T ss_pred CCCEEEE--CCCEEEEEECCccccCCcc--eEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence 3554444 357899999887 322 2222233456778999999999887776 899999999864
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=93.22 E-value=1.1 Score=35.01 Aligned_cols=72 Identities=10% Similarity=0.233 Sum_probs=51.5
Q ss_pred CCcEEEEEeCCCeEEEEEcCCCceeeee-----eec-------cCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCc
Q psy13856 156 SKCMIASCSQDRKVIIWTSNDYVTWTPF-----IMN-------TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGA 223 (271)
Q Consensus 156 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~-------~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~ 223 (271)
.+.++++-..+|.+++||+.+.+..... .+. .....|..+..+.+|.-+++-+ +|..+.|+.+- +.
T Consensus 21 ~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L-~~ 98 (219)
T PF07569_consen 21 NGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL-GC 98 (219)
T ss_pred CCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc-ce
Confidence 4678999999999999999986542111 122 3456788899998898777765 67889998763 45
Q ss_pred eeEEEE
Q psy13856 224 WQCITE 229 (271)
Q Consensus 224 ~~~~~~ 229 (271)
|..+..
T Consensus 99 W~~vsd 104 (219)
T PF07569_consen 99 WIRVSD 104 (219)
T ss_pred eEEecc
Confidence 666543
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=93.09 E-value=4.4 Score=33.54 Aligned_cols=128 Identities=10% Similarity=0.010 Sum_probs=70.8
Q ss_pred CcEEEEEeecC-CCCceeecc---ceeeEE---Eeeccceee---eEEEE--eeCCc-eEEeEEecCCCcceEEEEEccC
Q psy13856 86 EAAKHLGTVQS-SSPACLQPK---YFKLTV---YSTKLTRIL---ILVRI--CGGDK-WIEETKLENHSDWVRDVAWAPS 152 (271)
Q Consensus 86 ~~i~~~d~~~~-~~~~~~~~~---~~~~~~---~~~~~~~l~---~~v~i--~~~~~-~~~~~~~~~h~~~v~~v~~~p~ 152 (271)
|.+.++++... .....++.. .....+ ....+..++ +.+.+ ..... +.....+..+ ..+.++....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~~~~lv~~~g~~l~v~~l~~~~~l~~~~~~~~~-~~i~sl~~~~- 139 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSFNGRLVVAVGNKLYVYDLDNSKTLLKKAFYDSP-FYITSLSVFK- 139 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEETTEEEEEETTEEEEEEEETTSSEEEEEEE-BS-SSEEEEEEET-
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhhCCEEEEeecCEEEEEEccCcccchhhheecce-EEEEEEeccc-
Confidence 88999998421 001222221 222222 223345444 66666 34443 4444444433 3666666653
Q ss_pred CCCCCcEEEEEeCCCeEEEEEcCCCc-eeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 153 WGLSKCMIASCSQDRKVIIWTSNDYV-TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 153 ~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
++++.|..-..+.++..+... ......-......+.++.|-++++.++.+..+|.+.++..+.
T Consensus 140 -----~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 140 -----NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp -----TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred -----cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 588888888888877555422 111111223345688888887767999999999999999863
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=92.97 E-value=0.81 Score=43.47 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=55.8
Q ss_pred CcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 141 SDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 141 ~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
.....++.|+|. -....+.+..|+.|++..+..... ...-.......++++|+|.|..++.|...|++.-|.+.
T Consensus 155 ~vf~~~~~wnP~---vp~n~av~l~dlsl~V~~~~~~~~--~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~ 228 (1405)
T KOG3630|consen 155 PVFQLKNVWNPL---VPLNSAVDLSDLSLRVKSTKQLAQ--NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS 228 (1405)
T ss_pred ccccccccccCC---ccchhhhhccccchhhhhhhhhhh--hhcccCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence 345568999997 356678888899999987764332 11112345678999999999999999999999888775
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=92.91 E-value=1.8 Score=32.31 Aligned_cols=43 Identities=23% Similarity=0.546 Sum_probs=35.2
Q ss_pred CeEEEEEecCC------CEEEEEECCCcEEEEEeCC--CCceeEEEEeccc
Q psy13856 191 VVWNVSWSLTG------DILTVSCGDNSVSLWKENT--DGAWQCITEMGKT 233 (271)
Q Consensus 191 ~v~~v~~~~~g------~~l~s~s~D~~v~iw~~~~--~~~~~~~~~~~~~ 233 (271)
.+.+++|+|.| .+|++-..++.|.||.... .++|.++..+...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~~~~~W~~v~dvs~~ 137 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGNPQGEWNRVADVSEA 137 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCCccccEeeeeehhHH
Confidence 78899999953 6899999999999998765 5789888776554
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=92.82 E-value=6.4 Score=35.72 Aligned_cols=76 Identities=16% Similarity=0.212 Sum_probs=47.1
Q ss_pred CcceEEEEEccCCCCCCcEEEEEeCCCeEEE---EEcCCCceeee---eee-ccCCCCeEEEEEecCCCEEEEEECCCcE
Q psy13856 141 SDWVRDVAWAPSWGLSKCMIASCSQDRKVII---WTSNDYVTWTP---FIM-NTFDDVVWNVSWSLTGDILTVSCGDNSV 213 (271)
Q Consensus 141 ~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~i---wd~~~~~~~~~---~~~-~~h~~~v~~v~~~~~g~~l~s~s~D~~v 213 (271)
...|..+.|+| ||..++... ++.|.+ -....+.. .+ ..+ ......+.++.|..++.++ .+..++..
T Consensus 447 ~g~Issl~wSp----DG~RiA~i~-~g~v~Va~Vvr~~~G~~-~l~~~~~l~~~l~~~~~~l~W~~~~~L~-V~~~~~~~ 519 (591)
T PRK13616 447 PGPISELQLSR----DGVRAAMII-GGKVYLAVVEQTEDGQY-ALTNPREVGPGLGDTAVSLDWRTGDSLV-VGRSDPEH 519 (591)
T ss_pred CCCcCeEEECC----CCCEEEEEE-CCEEEEEEEEeCCCCce-eecccEEeecccCCccccceEecCCEEE-EEecCCCC
Confidence 45799999999 788887766 577776 33333321 11 112 2233446889999998855 55555555
Q ss_pred EEEEeCCCCc
Q psy13856 214 SLWKENTDGA 223 (271)
Q Consensus 214 ~iw~~~~~~~ 223 (271)
.+|.+.-++.
T Consensus 520 ~v~~v~vDG~ 529 (591)
T PRK13616 520 PVWYVNLDGS 529 (591)
T ss_pred ceEEEecCCc
Confidence 5676655443
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=92.78 E-value=3.3 Score=36.75 Aligned_cols=68 Identities=13% Similarity=0.318 Sum_probs=43.9
Q ss_pred EEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC-CcEEEEEe
Q psy13856 146 DVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD-NSVSLWKE 218 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-~~v~iw~~ 218 (271)
.+.|+|+ ...|+.-.....-.+++++.........+ .-.+-|.|.+|.+||+.|+.+-.. =.-+|||-
T Consensus 117 GCVWHPk----~~iL~VLT~~dvSV~~sV~~d~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 117 GCVWHPK----KAILTVLTARDVSVLPSVHCDSSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cccccCC----CceEEEEecCceeEeeeeeeCCceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 6789995 66666655544445667765543212223 445789999999999887766543 34667764
|
|
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=92.46 E-value=1.7 Score=37.86 Aligned_cols=95 Identities=9% Similarity=0.067 Sum_probs=59.3
Q ss_pred EEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEE
Q psy13856 39 ISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTV 111 (271)
Q Consensus 39 ~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~ 111 (271)
+.|-.|..|.-||. +..-++|....-..-.|++-..+| +++.||.+|-||+||-. +.
T Consensus 398 lvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri----~~----------- 461 (644)
T KOG2395|consen 398 LVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRI----GR----------- 461 (644)
T ss_pred EEeecCCceEEecccccCcceeeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehhh----hh-----------
Confidence 34456688888888 333445544322223344444444 88999999999999951 11
Q ss_pred EeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEc
Q psy13856 112 YSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTS 174 (271)
Q Consensus 112 ~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~ 174 (271)
.....+.+-..+|..|..+. +|.+|+..+ +.++.+-+.
T Consensus 462 --------------------~AKTAlPgLG~~I~hVdvta----dGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 462 --------------------RAKTALPGLGDAIKHVDVTA----DGKWILATC-KTYLLLIDT 499 (644)
T ss_pred --------------------hhhhcccccCCceeeEEeec----cCcEEEEec-ccEEEEEEE
Confidence 23344556778888888887 678776655 456666555
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=92.34 E-value=8.4 Score=34.88 Aligned_cols=95 Identities=17% Similarity=0.144 Sum_probs=52.7
Q ss_pred eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCe-----EEEEEcCCCceeeeeeeccCCCCeEEEEEecC
Q psy13856 126 CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK-----VIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLT 200 (271)
Q Consensus 126 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~ 200 (271)
..++.|..+..+..-........+ ++.+.+.||.|+. +..||..+..-..+..+....+.+..+. -+
T Consensus 451 P~t~~W~~~~~M~~~R~~~g~a~~------~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~--~~ 522 (571)
T KOG4441|consen 451 PETNTWTLIAPMNTRRSGFGVAVL------NGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV--LG 522 (571)
T ss_pred CCCCceeecCCcccccccceEEEE------CCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEE--EC
Confidence 344556665555443333333333 3677788887763 6778877755211111222222232222 25
Q ss_pred CCEEEEEECCC-----cEEEEEeCCCCceeEEEE
Q psy13856 201 GDILTVSCGDN-----SVSLWKENTDGAWQCITE 229 (271)
Q Consensus 201 g~~l~s~s~D~-----~v~iw~~~~~~~~~~~~~ 229 (271)
+...+.|+.|+ +|..||+.++ .|.....
T Consensus 523 ~~ly~vGG~~~~~~l~~ve~ydp~~d-~W~~~~~ 555 (571)
T KOG4441|consen 523 GKLYAVGGFDGNNNLNTVECYDPETD-TWTEVTE 555 (571)
T ss_pred CEEEEEecccCccccceeEEcCCCCC-ceeeCCC
Confidence 67778888875 5788887754 7877655
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=92.19 E-value=5.2 Score=36.20 Aligned_cols=73 Identities=21% Similarity=0.286 Sum_probs=42.7
Q ss_pred CCcEEEEEeCCCe-----EEEEEcCCCceeeeeeeccCCCCeEEEEE-ecCCCEEEEEECCC------cEEEEEeCCCCc
Q psy13856 156 SKCMIASCSQDRK-----VIIWTSNDYVTWTPFIMNTFDDVVWNVSW-SLTGDILTVSCGDN------SVSLWKENTDGA 223 (271)
Q Consensus 156 ~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~h~~~v~~v~~-~~~g~~l~s~s~D~------~v~iw~~~~~~~ 223 (271)
+|.+.+.||.||. +-.||..+.+ |. ....+......... .-+|.+.+.|+.|+ ++..||+.++ .
T Consensus 380 ~g~iYavGG~dg~~~l~svE~YDp~~~~-W~--~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~-~ 455 (571)
T KOG4441|consen 380 DGKLYAVGGFDGEKSLNSVECYDPVTNK-WT--PVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETN-T 455 (571)
T ss_pred CCEEEEEeccccccccccEEEecCCCCc-cc--ccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCC-c
Confidence 4788899998865 6677776644 21 11112222232222 23677888887654 5788888754 6
Q ss_pred eeEEEEecc
Q psy13856 224 WQCITEMGK 232 (271)
Q Consensus 224 ~~~~~~~~~ 232 (271)
|..+..+..
T Consensus 456 W~~~~~M~~ 464 (571)
T KOG4441|consen 456 WTLIAPMNT 464 (571)
T ss_pred eeecCCccc
Confidence 766655443
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.16 E-value=5.2 Score=35.77 Aligned_cols=71 Identities=10% Similarity=0.044 Sum_probs=37.4
Q ss_pred CcEEEEEeCC--------CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC-----CcEEEEEeCCCCc
Q psy13856 157 KCMIASCSQD--------RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD-----NSVSLWKENTDGA 223 (271)
Q Consensus 157 ~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-----~~v~iw~~~~~~~ 223 (271)
+.+++.|+.+ ..+.+||..+..-.....+.........+. .++.+++.|+.+ +.+.+||+.+ ..
T Consensus 438 ~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~-~~ 514 (534)
T PHA03098 438 GKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKT-NT 514 (534)
T ss_pred CEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCC-CE
Confidence 4566666543 237888887754211111111111111122 266777777654 4688898875 47
Q ss_pred eeEEEEe
Q psy13856 224 WQCITEM 230 (271)
Q Consensus 224 ~~~~~~~ 230 (271)
|..+..+
T Consensus 515 W~~~~~~ 521 (534)
T PHA03098 515 WTLFCKF 521 (534)
T ss_pred EEecCCC
Confidence 8766553
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=91.84 E-value=9.6 Score=35.46 Aligned_cols=98 Identities=14% Similarity=-0.010 Sum_probs=55.2
Q ss_pred cccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC-CceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCc
Q psy13856 64 RESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS-PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSD 142 (271)
Q Consensus 64 ~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~ 142 (271)
..+|..+.++|+|++++-.|..+.. +..+. +. +..-........+ .++++.| ... . ....+..
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~v~-V~~LP--~r~g~~~~~~~g~~~i-------~Crt~~v-~~~---~--~~~~~~~ 147 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRGVV-VLELP--RRWGKNGEFEDGKKEI-------NCRTVPV-DER---F--FTSNSSL 147 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCcEE-EEEec--cccCccccccCCCcce-------eEEEEEe-chh---h--ccCCCCc
Confidence 3457789999999999988886655 66653 11 1000000000000 0011111 000 0 0113456
Q ss_pred ceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc
Q psy13856 143 WVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV 178 (271)
Q Consensus 143 ~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 178 (271)
.|..+.|+|.. .++..|+.-..|+++|+||+....
T Consensus 148 ~i~qv~WhP~s-~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 148 EIKQVRWHPWS-ESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred eEEEEEEcCCC-CCCCeEEEEecCCEEEEEecCCCC
Confidence 78999999951 135678888889999999997643
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates | Back alignment and domain information |
|---|
Probab=91.52 E-value=1.6 Score=39.22 Aligned_cols=74 Identities=18% Similarity=0.309 Sum_probs=44.4
Q ss_pred CCcEEEEEeCCCeEEEEEcCC----CceeeeeeeccC--------------------CCCeEEEEEec----CCCEEEEE
Q psy13856 156 SKCMIASCSQDRKVIIWTSND----YVTWTPFIMNTF--------------------DDVVWNVSWSL----TGDILTVS 207 (271)
Q Consensus 156 ~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~h--------------------~~~v~~v~~~~----~g~~l~s~ 207 (271)
+...++.+..||.+....... +..+....+..+ ...+..++.+. +..+|++-
T Consensus 157 ~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~tl 236 (547)
T PF11715_consen 157 SEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFTL 236 (547)
T ss_dssp SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEEE
T ss_pred CCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEEE
Confidence 356777788899888887764 222211111111 23455566666 67899999
Q ss_pred ECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 208 CGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 208 s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
+.|+++|+|++.++ .++.....
T Consensus 237 ~~D~~LRiW~l~t~---~~~~~~~~ 258 (547)
T PF11715_consen 237 SRDHTLRIWSLETG---QCLATIDL 258 (547)
T ss_dssp ETTSEEEEEETTTT---CEEEEEET
T ss_pred eCCCeEEEEECCCC---eEEEEecc
Confidence 99999999999988 55555433
|
The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=91.48 E-value=5 Score=36.90 Aligned_cols=75 Identities=12% Similarity=0.034 Sum_probs=52.7
Q ss_pred CcceEEEEEc--cCCCCCCcEEEEEeCCCeEEEEEcCCCce-eeeeeeccCCCCeEEEEEecCC---C---EEEEEECCC
Q psy13856 141 SDWVRDVAWA--PSWGLSKCMIASCSQDRKVIIWTSNDYVT-WTPFIMNTFDDVVWNVSWSLTG---D---ILTVSCGDN 211 (271)
Q Consensus 141 ~~~v~~v~~~--p~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~h~~~v~~v~~~~~g---~---~l~s~s~D~ 211 (271)
...+++++++ . ..++||.++....|.||-...... ........|..-|-+|+|-++. . .+++++-.|
T Consensus 163 ~~SaWGLdIh~~~----~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G 238 (717)
T PF08728_consen 163 GASAWGLDIHDYK----KSRLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISG 238 (717)
T ss_pred CCceeEEEEEecC----cceEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccC
Confidence 4578899988 5 478899998888888887765321 0011122355678899998752 2 788888999
Q ss_pred cEEEEEeC
Q psy13856 212 SVSLWKEN 219 (271)
Q Consensus 212 ~v~iw~~~ 219 (271)
.+.+|++.
T Consensus 239 ~v~~~~I~ 246 (717)
T PF08728_consen 239 EVWTFKIK 246 (717)
T ss_pred cEEEEEEE
Confidence 99999883
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.32 E-value=4.2 Score=36.85 Aligned_cols=62 Identities=10% Similarity=0.050 Sum_probs=38.5
Q ss_pred eEEEEEccCCCCCCcEEEEEeCC-CeEEEE-----------EcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCC
Q psy13856 144 VRDVAWAPSWGLSKCMIASCSQD-RKVIIW-----------TSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDN 211 (271)
Q Consensus 144 v~~v~~~p~~~~~~~~l~s~~~d-g~i~iw-----------d~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 211 (271)
.+.-.|+| |+..+.+.... ..+++. ++..++. .. .....|..+.|+|||..++... ++
T Consensus 399 ~t~PsWsp----DG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~---~~--~~~g~Issl~wSpDG~RiA~i~-~g 468 (591)
T PRK13616 399 LTRPSWSL----DADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV---AS--RVPGPISELQLSRDGVRAAMII-GG 468 (591)
T ss_pred CCCceECC----CCCceEEEecCcceEEEeccCCCceEEEEeccCchh---hh--ccCCCcCeEEECCCCCEEEEEE-CC
Confidence 67788898 67766666432 222222 3322221 11 3356799999999999888766 46
Q ss_pred cEEE
Q psy13856 212 SVSL 215 (271)
Q Consensus 212 ~v~i 215 (271)
+|++
T Consensus 469 ~v~V 472 (591)
T PRK13616 469 KVYL 472 (591)
T ss_pred EEEE
Confidence 7766
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=90.91 E-value=2.3 Score=35.84 Aligned_cols=72 Identities=18% Similarity=0.141 Sum_probs=45.0
Q ss_pred CcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeecc-------C---------CCCeEEEEEecCCCEE
Q psy13856 141 SDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT-------F---------DDVVWNVSWSLTGDIL 204 (271)
Q Consensus 141 ~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-------h---------~~~v~~v~~~~~g~~l 204 (271)
...+....|+| +|+.++-.. ++.|.+++...+....+ ...+ - -+.-..+-|+|||++|
T Consensus 42 ~~~~~~~~~sP----~g~~~~~v~-~~nly~~~~~~~~~~~l-T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~l 115 (353)
T PF00930_consen 42 PPKLQDAKWSP----DGKYIAFVR-DNNLYLRDLATGQETQL-TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYL 115 (353)
T ss_dssp ETTBSEEEE-S----SSTEEEEEE-TTEEEEESSTTSEEEES-ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEE
T ss_pred ccccccceeec----CCCeeEEEe-cCceEEEECCCCCeEEe-ccccceeEEcCccceeccccccccccceEECCCCCEE
Confidence 56788999999 688888876 67899998766543111 1111 0 1123567899999999
Q ss_pred EEEECC-CcEEEEEe
Q psy13856 205 TVSCGD-NSVSLWKE 218 (271)
Q Consensus 205 ~s~s~D-~~v~iw~~ 218 (271)
|....| ..|..+.+
T Consensus 116 a~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 116 AFLRFDEREVPEYPL 130 (353)
T ss_dssp EEEEEE-TTS-EEEE
T ss_pred EEEEECCcCCceEEe
Confidence 887764 45555544
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=90.49 E-value=3.7 Score=37.72 Aligned_cols=109 Identities=12% Similarity=0.035 Sum_probs=68.2
Q ss_pred CCCEEEEccCCCeEEeccc------eeee----c----------cccccccccceEEEEc--CCCCeEEEEeCCCcEEEE
Q psy13856 34 IGHTLISCDTQAHIGIRST------ISLL----Q----------GSVYLRRESNKAGALS--PKLNRSATSSFHEAAKHL 91 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~------~~~~----~----------~h~~~~~~~i~~~~~s--~~~~~l~s~s~d~~i~~~ 91 (271)
+.+.|+.|.+||.|.+|.. +... . .-......++++++++ ...++||.++....|.+|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVF 192 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVF 192 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEE
Confidence 4568999999999999987 1111 0 0001112347889998 777788888888888777
Q ss_pred EeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCC-CCCCc-EEEEEeCCCeE
Q psy13856 92 GTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSW-GLSKC-MIASCSQDRKV 169 (271)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~-~~~~~-~l~s~~~dg~i 169 (271)
-.. .. +.+.....+. .|...|.+|+|-+.- +..|. ++++++-.|.+
T Consensus 193 af~---l~----------------------------~~r~~~~~s~-~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v 240 (717)
T PF08728_consen 193 AFA---LV----------------------------DERFYHVPSH-QHSHNIPNVSFLDDDLDPNGHVKVVATDISGEV 240 (717)
T ss_pred EEe---cc----------------------------cccccccccc-ccccCCCeeEeecCCCCCccceEEEEEeccCcE
Confidence 652 10 0000111111 266778899998742 11132 78888999999
Q ss_pred EEEEc
Q psy13856 170 IIWTS 174 (271)
Q Consensus 170 ~iwd~ 174 (271)
.+|++
T Consensus 241 ~~~~I 245 (717)
T PF08728_consen 241 WTFKI 245 (717)
T ss_pred EEEEE
Confidence 99887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=90.20 E-value=8.2 Score=30.80 Aligned_cols=69 Identities=9% Similarity=-0.078 Sum_probs=46.4
Q ss_pred CCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccce-EEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNK-AGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~-~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
+.--|++++.|+..|.+.+-+. ...+..-.. |. .....+++..+..|+.|+..+..|. ++..|+..
T Consensus 59 a~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~-----vk~~a~~d~~~glIycgshd~~~yalD~---~~~~cVyk 130 (354)
T KOG4649|consen 59 AIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVILET-----VKVRAQCDFDGGLIYCGSHDGNFYALDP---KTYGCVYK 130 (354)
T ss_pred eEEECCEEEEEEccCcEEEEEecchhheeeeeehhh-----hccceEEcCCCceEEEecCCCcEEEecc---cccceEEe
Confidence 3335778888888888888776 222221111 22 2345668899999999999999998 66666655
Q ss_pred cce
Q psy13856 105 KYF 107 (271)
Q Consensus 105 ~~~ 107 (271)
...
T Consensus 131 skc 133 (354)
T KOG4649|consen 131 SKC 133 (354)
T ss_pred ccc
Confidence 433
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=89.35 E-value=9.9 Score=31.73 Aligned_cols=25 Identities=8% Similarity=-0.089 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEE
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLG 92 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d 92 (271)
.++++|.|||+.+++ -..|.|++++
T Consensus 4 P~~~a~~pdG~l~v~-e~~G~i~~~~ 28 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVA-ERSGRIWVVD 28 (331)
T ss_dssp EEEEEEETTSCEEEE-ETTTEEEEEE
T ss_pred ceEEEEeCCCcEEEE-eCCceEEEEe
Confidence 689999999877665 5699998887
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=88.99 E-value=12 Score=30.87 Aligned_cols=82 Identities=13% Similarity=0.256 Sum_probs=43.8
Q ss_pred CCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEE-cCCCceeeeeeecc--CCCCeEEEEEecCCCEEEEEECCCcEEEE
Q psy13856 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT-SNDYVTWTPFIMNT--FDDVVWNVSWSLTGDILTVSCGDNSVSLW 216 (271)
Q Consensus 140 h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~v~iw 216 (271)
-...|.++.|.| ++.+.+.+ ..|.+++=+ ....+.|....... -.-.+..++|.+++...++|+ .|.+ +.
T Consensus 185 ~~~riq~~gf~~----~~~lw~~~-~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l-~~ 257 (302)
T PF14870_consen 185 SSRRIQSMGFSP----DGNLWMLA-RGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTL-LV 257 (302)
T ss_dssp SSS-EEEEEE-T----TS-EEEEE-TTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-E-EE
T ss_pred ccceehhceecC----CCCEEEEe-CCcEEEEccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccE-EE
Confidence 357899999999 56665544 788888877 23333332222222 122478999999888777665 5544 33
Q ss_pred EeCCCCceeEEE
Q psy13856 217 KENTDGAWQCIT 228 (271)
Q Consensus 217 ~~~~~~~~~~~~ 228 (271)
..+.+..|+...
T Consensus 258 S~DgGktW~~~~ 269 (302)
T PF14870_consen 258 STDGGKTWQKDR 269 (302)
T ss_dssp ESSTTSS-EE-G
T ss_pred eCCCCccceECc
Confidence 344555676643
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=88.72 E-value=11 Score=30.10 Aligned_cols=82 Identities=9% Similarity=0.095 Sum_probs=52.0
Q ss_pred EEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEE
Q psy13856 135 TKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVS 214 (271)
Q Consensus 135 ~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~ 214 (271)
+.+.+-...+.+++|+|. ++.+++.....+.|...+.. ++......+.+ .+..-.|++..++.++++.-.++.+.
T Consensus 15 ~~l~g~~~e~SGLTy~pd---~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g-~~D~EgI~y~g~~~~vl~~Er~~~L~ 89 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPD---TGTLFAVQDEPGEIYELSLD-GKVLRRIPLDG-FGDYEGITYLGNGRYVLSEERDQRLY 89 (248)
T ss_dssp EE-TT--S-EEEEEEETT---TTEEEEEETTTTEEEEEETT---EEEEEE-SS--SSEEEEEE-STTEEEEEETTTTEEE
T ss_pred eECCCccCCccccEEcCC---CCeEEEEECCCCEEEEEcCC-CCEEEEEeCCC-CCCceeEEEECCCEEEEEEcCCCcEE
Confidence 445566667999999995 56788888889999888864 45422223333 34667788887777777665689999
Q ss_pred EEEeCCC
Q psy13856 215 LWKENTD 221 (271)
Q Consensus 215 iw~~~~~ 221 (271)
++++...
T Consensus 90 ~~~~~~~ 96 (248)
T PF06977_consen 90 IFTIDDD 96 (248)
T ss_dssp EEEE---
T ss_pred EEEEecc
Confidence 9999543
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=88.34 E-value=16 Score=31.50 Aligned_cols=147 Identities=6% Similarity=-0.054 Sum_probs=77.5
Q ss_pred CCCCCCEEEEccCCCeEEeccc-eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceee
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST-ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKL 109 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~-~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~ 109 (271)
..+||.+++.+..-..++-||- ...++.+.......+.++.|.+++..++.+ .+|.+ ++.. ..+.....
T Consensus 246 ~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~---d~G~~~~~----- 315 (398)
T PLN00033 246 RSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSK---GTGLTEED----- 315 (398)
T ss_pred EcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEec---CCCCcccc-----
Confidence 3456666666655333344554 111222222222337889999888776655 66776 4433 11111000
Q ss_pred EEEeeccceeeeEEEEeeCCceEEeEEec--CCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeee-ec
Q psy13856 110 TVYSTKLTRILILVRICGGDKWIEETKLE--NHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFI-MN 186 (271)
Q Consensus 110 ~~~~~~~~~l~~~v~i~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~ 186 (271)
. ...... .-...+.++.|.+ ++..+++| ..|.+... ...++.|.... ..
T Consensus 316 -------------------~---~f~~~~~~~~~~~l~~v~~~~----d~~~~a~G-~~G~v~~s-~D~G~tW~~~~~~~ 367 (398)
T PLN00033 316 -------------------F---DFEEADIKSRGFGILDVGYRS----KKEAWAAG-GSGILLRS-TDGGKSWKRDKGAD 367 (398)
T ss_pred -------------------c---ceeecccCCCCcceEEEEEcC----CCcEEEEE-CCCcEEEe-CCCCcceeEccccC
Confidence 0 111111 1123578898887 45655554 57766554 45566553322 23
Q ss_pred cCCCCeEEEEEecCCCEEEEEECCCcEEEE
Q psy13856 187 TFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216 (271)
Q Consensus 187 ~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw 216 (271)
.-...++++.|.++++.+++| .+|.|.-|
T Consensus 368 ~~~~~ly~v~f~~~~~g~~~G-~~G~il~~ 396 (398)
T PLN00033 368 NIAANLYSVKFFDDKKGFVLG-NDGVLLRY 396 (398)
T ss_pred CCCcceeEEEEcCCCceEEEe-CCcEEEEe
Confidence 345678999998877766655 46766444
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=88.27 E-value=16 Score=31.47 Aligned_cols=123 Identities=18% Similarity=0.125 Sum_probs=65.8
Q ss_pred ceEEEEcCCCCeEEEE-eCCC----cEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCC
Q psy13856 67 NKAGALSPKLNRSATS-SFHE----AAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHS 141 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~-s~d~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~ 141 (271)
+....++|+|++++-+ +..| .++++|+ .+++.+. ..+..
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl---~tg~~l~-------------------------------d~i~~-- 169 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDL---ETGKFLP-------------------------------DGIEN-- 169 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEET---TTTEEEE-------------------------------EEEEE--
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEEC---CCCcCcC-------------------------------Ccccc--
Confidence 4478899999987754 4434 4778887 4443222 11111
Q ss_pred cceEEEEEccCCCCCCcEEEEEe-C----------CCeEEEEEcCCCceeeeeeeccCCCC--eEEEEEecCCCEEEEEE
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCS-Q----------DRKVIIWTSNDYVTWTPFIMNTFDDV--VWNVSWSLTGDILTVSC 208 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~-~----------dg~i~iwd~~~~~~~~~~~~~~h~~~--v~~v~~~~~g~~l~s~s 208 (271)
.....+.|.+ ++..|+-.. . ...|+.|.+.+...-....+...... ...+..++++++|+..+
T Consensus 170 ~~~~~~~W~~----d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~ 245 (414)
T PF02897_consen 170 PKFSSVSWSD----DGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISS 245 (414)
T ss_dssp EESEEEEECT----TSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEE
T ss_pred cccceEEEeC----CCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEE
Confidence 1112388888 455443333 2 23477777776543112334433332 56788899999877544
Q ss_pred C---C-CcEEEEEeCCC----CceeEEEE
Q psy13856 209 G---D-NSVSLWKENTD----GAWQCITE 229 (271)
Q Consensus 209 ~---D-~~v~iw~~~~~----~~~~~~~~ 229 (271)
. + ..+++.++... ..|.++..
T Consensus 246 ~~~~~~s~v~~~d~~~~~~~~~~~~~l~~ 274 (414)
T PF02897_consen 246 SSGTSESEVYLLDLDDGGSPDAKPKLLSP 274 (414)
T ss_dssp ESSSSEEEEEEEECCCTTTSS-SEEEEEE
T ss_pred EccccCCeEEEEeccccCCCcCCcEEEeC
Confidence 3 2 34777777653 35655543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.61 E-value=14 Score=30.05 Aligned_cols=163 Identities=10% Similarity=0.064 Sum_probs=87.3
Q ss_pred CCCCE-EEEccCCCeEEeccceeeeccccccccccceEEEEcCCC-CeEEEEeCCCcE-EEEEeecCCCCceeec----c
Q psy13856 33 RIGHT-LISCDTQAHIGIRSTISLLQGSVYLRRESNKAGALSPKL-NRSATSSFHEAA-KHLGTVQSSSPACLQP----K 105 (271)
Q Consensus 33 ~~g~~-l~s~s~d~~i~lwd~~~~~~~h~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i-~~~d~~~~~~~~~~~~----~ 105 (271)
+||++ .++.+.+|.+..=-. + ... .-.++|+|.. .-++-+=.-|+. .++|..+......+.. .
T Consensus 45 ~dgs~g~a~~~eaGk~v~~~~---l---paR----~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RH 114 (366)
T COG3490 45 RDGSFGAATLSEAGKIVFATA---L---PAR----GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRH 114 (366)
T ss_pred cCCceeEEEEccCCceeeeee---c---ccc----cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCce
Confidence 56664 666677776642111 0 011 2245555532 233334333432 2566532222222211 2
Q ss_pred ceeeEEEeeccceee----------eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC------C-C
Q psy13856 106 YFKLTVYSTKLTRIL----------ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ------D-R 167 (271)
Q Consensus 106 ~~~~~~~~~~~~~l~----------~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~------d-g 167 (271)
++..-+++.++.+|. +.|-+ +-...+..+.++..|.-.-..+.|.+ ||+.++.+.. | |
T Consensus 115 fyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~----DGrtlvvanGGIethpdfg 190 (366)
T COG3490 115 FYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMA----DGRTLVVANGGIETHPDFG 190 (366)
T ss_pred eecccccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEec----CCcEEEEeCCceecccccC
Confidence 567788888888776 66767 44455677888888887778899999 7888877642 0 1
Q ss_pred -----------eEEEEEcCCCceeeeeeec--cCCCCeEEEEEecCCCEEEEEEC
Q psy13856 168 -----------KVIIWTSNDYVTWTPFIMN--TFDDVVWNVSWSLTGDILTVSCG 209 (271)
Q Consensus 168 -----------~i~iwd~~~~~~~~~~~~~--~h~~~v~~v~~~~~g~~l~s~s~ 209 (271)
++.+-|..++..++...+. -+...+..++..+||..++-+-.
T Consensus 191 R~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy 245 (366)
T COG3490 191 RTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQY 245 (366)
T ss_pred ccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEe
Confidence 1222232233322222222 23346777777777776665544
|
|
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=87.60 E-value=3.5 Score=39.52 Aligned_cols=63 Identities=14% Similarity=0.133 Sum_probs=42.3
Q ss_pred CCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccC-CCCeEEEEEecCCCEEEE
Q psy13856 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTF-DDVVWNVSWSLTGDILTV 206 (271)
Q Consensus 140 h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~~v~~~~~g~~l~s 206 (271)
-...+++++|+| .|..++.|-..|++.-|-..-.....+...... ...|.+|+|-....++++
T Consensus 197 ~t~~~Tav~WSp----rGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 197 VTNSQTAVLWSP----RGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred cccceeeEEecc----ccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 356788999999 499999999999998887644321001111111 357899999877666554
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.46 E-value=21 Score=31.98 Aligned_cols=70 Identities=11% Similarity=0.104 Sum_probs=35.9
Q ss_pred CcEEEEEeCC------CeEEEEEcCCCceeeee-eeccCCCCeEEEEEecCCCEEEEEECCC--------cEEEEEeCCC
Q psy13856 157 KCMIASCSQD------RKVIIWTSNDYVTWTPF-IMNTFDDVVWNVSWSLTGDILTVSCGDN--------SVSLWKENTD 221 (271)
Q Consensus 157 ~~~l~s~~~d------g~i~iwd~~~~~~~~~~-~~~~h~~~v~~v~~~~~g~~l~s~s~D~--------~v~iw~~~~~ 221 (271)
+.+.+.||.+ ..+..||..+.. |... .+...... .++ ...++.+.+.|+.++ .+.+||+.+
T Consensus 390 ~~iYv~GG~~~~~~~~~~v~~yd~~t~~-W~~~~~~p~~r~~-~~~-~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~- 465 (534)
T PHA03098 390 NLIYVIGGISKNDELLKTVECFSLNTNK-WSKGSPLPISHYG-GCA-IYHDGKIYVIGGISYIDNIKVYNIVESYNPVT- 465 (534)
T ss_pred CEEEEECCcCCCCcccceEEEEeCCCCe-eeecCCCCccccC-ceE-EEECCEEEEECCccCCCCCcccceEEEecCCC-
Confidence 5666666632 457888887644 2111 11111111 112 223566666666432 378888775
Q ss_pred CceeEEEEe
Q psy13856 222 GAWQCITEM 230 (271)
Q Consensus 222 ~~~~~~~~~ 230 (271)
+.|..+..+
T Consensus 466 ~~W~~~~~~ 474 (534)
T PHA03098 466 NKWTELSSL 474 (534)
T ss_pred CceeeCCCC
Confidence 478766543
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=87.04 E-value=10 Score=33.35 Aligned_cols=61 Identities=13% Similarity=0.198 Sum_probs=48.6
Q ss_pred CCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 156 SKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 156 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
..-++|.++..|-|++||.-..+. ...+.+...+|..+....+|.++++.+. ..+.+-|+.
T Consensus 572 esGyIa~as~kGDirLyDRig~rA--KtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 572 ESGYIAAASRKGDIRLYDRIGKRA--KTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP 632 (776)
T ss_pred cCceEEEecCCCceeeehhhcchh--hhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence 467999999999999999765443 4567778889999999999999887774 457777764
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.90 E-value=16 Score=30.14 Aligned_cols=107 Identities=7% Similarity=-0.023 Sum_probs=59.6
Q ss_pred ceEEEEcCCCCeEEEEeC-CCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceE
Q psy13856 67 NKAGALSPKLNRSATSSF-HEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVR 145 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~ 145 (271)
.++++||||++.|..+-. .+.|.-++... ..+. ..++ .....+....+..=
T Consensus 165 ~NGla~SpDg~tly~aDT~~~~i~r~~~d~-~~g~--------------------------~~~~-~~~~~~~~~~G~PD 216 (307)
T COG3386 165 PNGLAFSPDGKTLYVADTPANRIHRYDLDP-ATGP--------------------------IGGR-RGFVDFDEEPGLPD 216 (307)
T ss_pred cCceEECCCCCEEEEEeCCCCeEEEEecCc-ccCc--------------------------cCCc-ceEEEccCCCCCCC
Confidence 568999999987766643 35565555410 0000 0010 11122222334444
Q ss_pred EEEEccCCCCCCcEEEEEeCCC-eEEEEEcCCCceeeeeeeccCCCCeEEEEEe-cCCCEEEEEE
Q psy13856 146 DVAWAPSWGLSKCMIASCSQDR-KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWS-LTGDILTVSC 208 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~dg-~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s 208 (271)
.++... +|.+.+++...| .|.+|+.. ++. ...+.-....+.+++|- |+.+.|+..+
T Consensus 217 G~~vDa----dG~lw~~a~~~g~~v~~~~pd-G~l--~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 217 GMAVDA----DGNLWVAAVWGGGRVVRFNPD-GKL--LGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ceEEeC----CCCEEEecccCCceEEEECCC-CcE--EEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 566676 578776555454 89999988 665 44444444677888885 4555554444
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=86.75 E-value=19 Score=31.16 Aligned_cols=86 Identities=8% Similarity=0.084 Sum_probs=52.6
Q ss_pred ecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEE--EEecC--------------
Q psy13856 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNV--SWSLT-------------- 200 (271)
Q Consensus 137 ~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v--~~~~~-------------- 200 (271)
+......+.+|+.+| ++.+.|....=|+|.++|+..+.. +...++..++=..- ...+.
T Consensus 303 l~D~~R~~~~i~~sP----~~~laA~tDslGRV~LiD~~~~~v--vrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 303 LPDSKREGESICLSP----SGRLAAVTDSLGRVLLIDVARGIV--VRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred eccCCceEEEEEECC----CCCEEEEEcCCCcEEEEECCCChh--hhhhccCccceEEEEEeecccccccccccccCCCC
Confidence 334445678899999 588888877779999999988654 33344443221110 00000
Q ss_pred --CC-EEEEEECCCcEEEEEeCCCCceeEEEEec
Q psy13856 201 --GD-ILTVSCGDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 201 --g~-~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
.. +++-+-.-|.|.||.++.+ ..+..+.
T Consensus 377 ~~~l~LvIyaprRg~lEvW~~~~g---~Rv~a~~ 407 (415)
T PF14655_consen 377 RFALFLVIYAPRRGILEVWSMRQG---PRVAAFN 407 (415)
T ss_pred cceEEEEEEeccCCeEEEEecCCC---CEEEEEE
Confidence 11 2344556889999999987 4544443
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=86.70 E-value=30 Score=33.05 Aligned_cols=60 Identities=13% Similarity=0.132 Sum_probs=47.1
Q ss_pred CcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 157 KCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
|.++|.- ...|++|++...+. ......|..++..+...-.|..++.|.--+.+.+...+.
T Consensus 840 gkllA~I--n~~vrLye~t~~~e--Lr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~ 899 (1096)
T KOG1897|consen 840 GKLLAGI--NQSVRLYEWTTERE--LRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKG 899 (1096)
T ss_pred CeEEEec--CcEEEEEEccccce--ehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEec
Confidence 5666654 46899999988754 566667888899999988999999998888888777654
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=86.62 E-value=24 Score=32.31 Aligned_cols=96 Identities=16% Similarity=0.185 Sum_probs=58.9
Q ss_pred EEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEe--cCCCEEEEEEC
Q psy13856 132 IEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWS--LTGDILTVSCG 209 (271)
Q Consensus 132 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~--~~g~~l~s~s~ 209 (271)
....++........-+.-+.. +..-+.-+....+.|||.+.+... ........+.|.++.|. |+|+.+++.+.
T Consensus 20 ~~t~~~~T~i~~~~li~gss~----~k~a~V~~~~~~LtIWD~~~~~lE-~~~~f~~~~~I~dLDWtst~d~qsiLaVGf 94 (631)
T PF12234_consen 20 LLTSTFETGISNPSLISGSSI----KKIAVVDSSRSELTIWDTRSGVLE-YEESFSEDDPIRDLDWTSTPDGQSILAVGF 94 (631)
T ss_pred EEEEEEecCCCCcceEeeccc----CcEEEEECCCCEEEEEEcCCcEEE-EeeeecCCCceeeceeeecCCCCEEEEEEc
Confidence 333444433334444444442 333334444567999999887632 22222446789999996 57889999999
Q ss_pred CCcEEEEEe------CCCCceeEEEEecc
Q psy13856 210 DNSVSLWKE------NTDGAWQCITEMGK 232 (271)
Q Consensus 210 D~~v~iw~~------~~~~~~~~~~~~~~ 232 (271)
.+.|.+|-. +....|..+.++.-
T Consensus 95 ~~~v~l~~Q~R~dy~~~~p~w~~i~~i~i 123 (631)
T PF12234_consen 95 PHHVLLYTQLRYDYTNKGPSWAPIRKIDI 123 (631)
T ss_pred CcEEEEEEccchhhhcCCcccceeEEEEe
Confidence 999999964 22345777776643
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=86.19 E-value=20 Score=30.43 Aligned_cols=62 Identities=13% Similarity=0.231 Sum_probs=35.3
Q ss_pred CcceEEEEEccCCCCCCcEEEEEeCC-------------------CeEEEEEcCCCceeeeeee-ccCCCCeEEEEEecC
Q psy13856 141 SDWVRDVAWAPSWGLSKCMIASCSQD-------------------RKVIIWTSNDYVTWTPFIM-NTFDDVVWNVSWSLT 200 (271)
Q Consensus 141 ~~~v~~v~~~p~~~~~~~~l~s~~~d-------------------g~i~iwd~~~~~~~~~~~~-~~h~~~v~~v~~~~~ 200 (271)
......+.|.| |+.+.++-+.. |.+..++..... ...+ .++ ...+.++|+++
T Consensus 123 ~~~~~~l~~gp----DG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~---~e~~a~G~-rnp~Gl~~d~~ 194 (367)
T TIGR02604 123 HHSLNSLAWGP----DGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGK---LRVVAHGF-QNPYGHSVDSW 194 (367)
T ss_pred cccccCceECC----CCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCe---EEEEecCc-CCCccceECCC
Confidence 34567888888 56655544311 345555554433 2222 232 34568999999
Q ss_pred CCEEEEEECC
Q psy13856 201 GDILTVSCGD 210 (271)
Q Consensus 201 g~~l~s~s~D 210 (271)
|.++++-..+
T Consensus 195 G~l~~tdn~~ 204 (367)
T TIGR02604 195 GDVFFCDNDD 204 (367)
T ss_pred CCEEEEccCC
Confidence 9887765443
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=86.13 E-value=16 Score=29.19 Aligned_cols=144 Identities=10% Similarity=0.009 Sum_probs=68.2
Q ss_pred ceEEEEcCCCCeEEEEe-CCCcEEEEEeecCCCCceeeccce-----eeEEEeeccceee------eEEEE--e--eCCc
Q psy13856 67 NKAGALSPKLNRSATSS-FHEAAKHLGTVQSSSPACLQPKYF-----KLTVYSTKLTRIL------ILVRI--C--GGDK 130 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s-~d~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~------~~v~i--~--~~~~ 130 (271)
+.+++|.|+.+.|++.. ..+.|..++ ..++.++...+ ...+....+..++ +.+.+ . ....
T Consensus 24 ~SGLTy~pd~~tLfaV~d~~~~i~els----~~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~ 99 (248)
T PF06977_consen 24 LSGLTYNPDTGTLFAVQDEPGEIYELS----LDGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTS 99 (248)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEEE----TT--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT
T ss_pred ccccEEcCCCCeEEEEECCCCEEEEEc----CCCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccc
Confidence 89999999877665554 445553334 44666655422 2333333333333 22322 1 1111
Q ss_pred e--EEeEEe-----cCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC---Cceeeeeee------ccCCCCeEE
Q psy13856 131 W--IEETKL-----ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND---YVTWTPFIM------NTFDDVVWN 194 (271)
Q Consensus 131 ~--~~~~~~-----~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~---~~~~~~~~~------~~h~~~v~~ 194 (271)
. .....+ ..+...+..++|+|. ++.|..+-...-..+|.+.. ......... ..+...+..
T Consensus 100 ~~~~~~~~~~l~~~~~~N~G~EGla~D~~----~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~ 175 (248)
T PF06977_consen 100 LDRADVQKISLGFPNKGNKGFEGLAYDPK----TNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSG 175 (248)
T ss_dssp --EEEEEEEE---S---SS--EEEEEETT----TTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---E
T ss_pred cchhhceEEecccccCCCcceEEEEEcCC----CCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccc
Confidence 0 111111 124456889999995 44444555555556666653 211111111 123346788
Q ss_pred EEEecC-CCEEEEEECCCcEEEEEe
Q psy13856 195 VSWSLT-GDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 195 v~~~~~-g~~l~s~s~D~~v~iw~~ 218 (271)
++++|. +.+++.+..+..|..+|.
T Consensus 176 l~~~p~t~~lliLS~es~~l~~~d~ 200 (248)
T PF06977_consen 176 LSYDPRTGHLLILSDESRLLLELDR 200 (248)
T ss_dssp EEEETTTTEEEEEETTTTEEEEE-T
T ss_pred eEEcCCCCeEEEEECCCCeEEEECC
Confidence 999996 566777777888888883
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=85.09 E-value=1.5 Score=40.88 Aligned_cols=57 Identities=12% Similarity=-0.087 Sum_probs=43.2
Q ss_pred CCCCEEEEccCCCeEEeccc----eeeeccccccccccceEE-----------EEcCCCCeEEEEeCCCcEEEEEe
Q psy13856 33 RIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAG-----------ALSPKLNRSATSSFHEAAKHLGT 93 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~-----------~~s~~~~~l~s~s~d~~i~~~d~ 93 (271)
++..+++.+-.++.|++... ...+.+|..+ +..+ ..||||+.++.+..||.++.|.+
T Consensus 193 ~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~----~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 193 VNKVYICYGLKGGEIRLLNINRALRSLFRSHSQR----VTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccceeeeccCCCceeEeeechHHHHHHHhcCCC----cccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 34567777888888888666 5556678776 4443 36899999999999999988876
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=84.91 E-value=27 Score=30.88 Aligned_cols=70 Identities=9% Similarity=0.055 Sum_probs=37.7
Q ss_pred CCcEEEEEeCCC---eEEEEEcCCCceeeee-eeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEec
Q psy13856 156 SKCMIASCSQDR---KVIIWTSNDYVTWTPF-IMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 156 ~~~~l~s~~~dg---~i~iwd~~~~~~~~~~-~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
++.+.+.||.++ .+..||.++.. |... .+....... ++ ...++.+.+.|+ .+.+||+++ ++|..+..+.
T Consensus 362 ~g~IYviGG~~~~~~~ve~ydp~~~~-W~~~~~m~~~r~~~-~~-~~~~~~IYv~GG---~~e~ydp~~-~~W~~~~~m~ 434 (480)
T PHA02790 362 NNVIYVIGGHSETDTTTEYLLPNHDQ-WQFGPSTYYPHYKS-CA-LVFGRRLFLVGR---NAEFYCESS-NTWTLIDDPI 434 (480)
T ss_pred CCEEEEecCcCCCCccEEEEeCCCCE-EEeCCCCCCccccc-eE-EEECCEEEEECC---ceEEecCCC-CcEeEcCCCC
Confidence 356777777553 46678876643 3211 111111111 12 133566666663 577899875 5898777664
Q ss_pred c
Q psy13856 232 K 232 (271)
Q Consensus 232 ~ 232 (271)
.
T Consensus 435 ~ 435 (480)
T PHA02790 435 Y 435 (480)
T ss_pred C
Confidence 4
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=84.72 E-value=35 Score=31.96 Aligned_cols=77 Identities=14% Similarity=0.121 Sum_probs=52.1
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC---------Cc-eeeeeee--------ccCCCCeEEEEEecC---
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND---------YV-TWTPFIM--------NTFDDVVWNVSWSLT--- 200 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~---------~~-~~~~~~~--------~~h~~~v~~v~~~~~--- 200 (271)
-.|..|..+| +|.+++..|..|.+.+.=.+. ++ ...+..+ ..+...|..+.|+|.
T Consensus 85 f~v~~i~~n~----~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~ 160 (717)
T PF10168_consen 85 FEVHQISLNP----TGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSES 160 (717)
T ss_pred eeEEEEEECC----CCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCC
Confidence 4678899999 689998888777544433221 11 1111111 123457899999996
Q ss_pred CCEEEEEECCCcEEEEEeCCCC
Q psy13856 201 GDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 201 g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
+.+|+.=..|+++++||+....
T Consensus 161 ~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 161 DSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred CCeEEEEecCCEEEEEecCCCC
Confidence 5788888899999999997543
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=84.59 E-value=20 Score=29.13 Aligned_cols=48 Identities=10% Similarity=0.057 Sum_probs=35.3
Q ss_pred CCCCCEEEEccCC-----CeEEeccc------eeeeccccccccccceEEEEcCCCCeEEEEe
Q psy13856 32 LRIGHTLISCDTQ-----AHIGIRST------ISLLQGSVYLRRESNKAGALSPKLNRSATSS 83 (271)
Q Consensus 32 ~~~g~~l~s~s~d-----~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s 83 (271)
++||.+|...-.| |.|-+||. +..+..|.-. .-.+.+.+||+.++.+.
T Consensus 122 s~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiG----pHev~lm~DGrtlvvan 180 (366)
T COG3490 122 SPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIG----PHEVTLMADGRTLVVAN 180 (366)
T ss_pred CCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcC----cceeEEecCCcEEEEeC
Confidence 3688876655333 78999998 5556667666 67889999999887763
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=84.39 E-value=0.98 Score=41.94 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=50.6
Q ss_pred CcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEE-----------EEecCCCEEEEEEC
Q psy13856 141 SDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNV-----------SWSLTGDILTVSCG 209 (271)
Q Consensus 141 ~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v-----------~~~~~g~~l~s~s~ 209 (271)
...+.-|.|+|-.. ...++..+-.++.+++....... ...+.+|...+..+ ..+|||..++.++.
T Consensus 180 gs~~~~V~wcp~~~-~~~~ic~~~~~~~i~lL~~~ra~---~~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~ 255 (1283)
T KOG1916|consen 180 GSDPQLVSWCPIAV-NKVYICYGLKGGEIRLLNINRAL---RSLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAIS 255 (1283)
T ss_pred CCCcceeeeccccc-ccceeeeccCCCceeEeeechHH---HHHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeec
Confidence 34556677776211 34677777778888887776543 34455565443332 36899999999999
Q ss_pred CCcEEEEEeC
Q psy13856 210 DNSVSLWKEN 219 (271)
Q Consensus 210 D~~v~iw~~~ 219 (271)
||.+++|.+.
T Consensus 256 dG~v~f~Qiy 265 (1283)
T KOG1916|consen 256 DGSVGFYQIY 265 (1283)
T ss_pred CCccceeeee
Confidence 9999999874
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=84.05 E-value=26 Score=29.96 Aligned_cols=59 Identities=5% Similarity=0.058 Sum_probs=37.2
Q ss_pred CcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 157 KCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+..+..++.+|.+..+|..+++. .-... .. ....+ ...+..++.++.|+.+..+|..++
T Consensus 256 ~~~vy~~~~~g~l~ald~~tG~~--~W~~~-~~-~~~~~--~~~~~~vy~~~~~g~l~ald~~tG 314 (394)
T PRK11138 256 GGVVYALAYNGNLVALDLRSGQI--VWKRE-YG-SVNDF--AVDGGRIYLVDQNDRVYALDTRGG 314 (394)
T ss_pred CCEEEEEEcCCeEEEEECCCCCE--EEeec-CC-CccCc--EEECCEEEEEcCCCeEEEEECCCC
Confidence 34566677899999999998863 11111 11 11111 124566777778889999988766
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=83.56 E-value=29 Score=30.10 Aligned_cols=73 Identities=10% Similarity=0.128 Sum_probs=47.1
Q ss_pred eEEEEEccCCCCC-CcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 144 VRDVAWAPSWGLS-KCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 144 v~~v~~~p~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
...+++-|-++.. ..+|..-+.||.+.+|+-+...- ...+.. ---.-.++|.+.-..+++++.+..+.-|+..
T Consensus 131 a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f--~~~lp~-~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 131 AYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAF--SRFLPD-FLLPGPLCYCPRTDSFVTASSSWTLECYKYQ 204 (418)
T ss_pred eeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEE--EEEcCC-CCCCcCeEEeecCCEEEEecCceeEEEecHH
Confidence 3444444432222 57899999999999999766331 222222 1122346788888888899888888888874
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=83.28 E-value=4.6 Score=33.99 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=38.7
Q ss_pred CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 166 DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.+.+.+||+.++.. ..+......+....|+|+|+.++... ++.|++++..++
T Consensus 22 ~~~y~i~d~~~~~~---~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~ 73 (353)
T PF00930_consen 22 KGDYYIYDIETGEI---TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATG 73 (353)
T ss_dssp EEEEEEEETTTTEE---EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTS
T ss_pred ceeEEEEecCCCce---EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCC
Confidence 46789999998763 33333356788899999999999887 678999987655
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=83.27 E-value=26 Score=29.32 Aligned_cols=58 Identities=10% Similarity=0.197 Sum_probs=36.1
Q ss_pred EEEEEcCCCceeeeeeeccCCCCeEEEEEecCCC-EEEEE-ECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 169 VIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGD-ILTVS-CGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 169 i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~-s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
|.++|+.+.+. +..+.- ..++.++..+.+.. +|++. ..++.+.+||..++ +.+.++++
T Consensus 271 VWv~D~~t~kr--v~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tG---k~~~~~~~ 330 (342)
T PF06433_consen 271 VWVYDLKTHKR--VARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATG---KLVRSIEQ 330 (342)
T ss_dssp EEEEETTTTEE--EEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT-----EEEEE--
T ss_pred EEEEECCCCeE--EEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCC---cEEeehhc
Confidence 77777777664 333331 23577899988754 55544 45889999999988 55555543
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=83.11 E-value=15 Score=31.79 Aligned_cols=151 Identities=10% Similarity=-0.093 Sum_probs=84.7
Q ss_pred CCCCEEEEccCCCeEEeccc-eeee------ccccccccccce-EEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 33 RIGHTLISCDTQAHIGIRST-ISLL------QGSVYLRRESNK-AGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-~~~~------~~h~~~~~~~i~-~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
|||+.+..-+. ..+.++++ .+.+ ....+..+..|. .+..-..|..+..+..||-|..|-... +.+
T Consensus 230 Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr-~~~----- 302 (733)
T COG4590 230 PDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR-RDG----- 302 (733)
T ss_pred CCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee-cCC-----
Confidence 78886665555 67888877 1111 111111111122 222233456778888999998886521 111
Q ss_pred cceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeee
Q psy13856 105 KYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFI 184 (271)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 184 (271)
...+..++.++-....+..+.-.. ..+-+++-...|++..+.....+. -.
T Consensus 303 -----------------------~p~l~h~R~f~l~pa~~~~l~pe~----~rkgF~~l~~~G~L~~f~st~~~~---lL 352 (733)
T COG4590 303 -----------------------QPHLNHIRNFKLAPAEVQFLLPET----NRKGFYSLYRNGTLQSFYSTSEKL---LL 352 (733)
T ss_pred -----------------------CCcceeeeccccCcccceeecccc----ccceEEEEcCCCceeeeecccCcc---ee
Confidence 111223333332334444443222 356777788888888887665442 22
Q ss_pred eccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 185 MNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 185 ~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+..--+...-++++|.+.+|++-. .|+++++.+++.
T Consensus 353 ~~~~~~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr 388 (733)
T COG4590 353 FERAYQAPQLVAMSPNQAYLLSED-QGKIRLAQLENR 388 (733)
T ss_pred hhhhhcCcceeeeCcccchheeec-CCceEEEEecCC
Confidence 233334566789999999987764 568999988754
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=82.91 E-value=25 Score=29.01 Aligned_cols=151 Identities=11% Similarity=-0.009 Sum_probs=77.1
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc--ee---eeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST--IS---LLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~--~~---~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
..++...+. +|. |+.+.. +.|.+|++ -. ....+... ..+.++.. .+++++.|..-..+.++... ..
T Consensus 89 g~V~ai~~~-~~~-lv~~~g-~~l~v~~l~~~~~l~~~~~~~~~--~~i~sl~~--~~~~I~vgD~~~sv~~~~~~--~~ 159 (321)
T PF03178_consen 89 GPVTAICSF-NGR-LVVAVG-NKLYVYDLDNSKTLLKKAFYDSP--FYITSLSV--FKNYILVGDAMKSVSLLRYD--EE 159 (321)
T ss_dssp S-EEEEEEE-TTE-EEEEET-TEEEEEEEETTSSEEEEEEE-BS--SSEEEEEE--ETTEEEEEESSSSEEEEEEE--TT
T ss_pred CcceEhhhh-CCE-EEEeec-CEEEEEEccCcccchhhheecce--EEEEEEec--cccEEEEEEcccCEEEEEEE--cc
Confidence 334555554 444 444444 79999988 11 11111121 01334433 35688888877788777542 11
Q ss_pred CceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC-
Q psy13856 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY- 177 (271)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~- 177 (271)
.. .+..+.. .....+++++.+-+ +++.++.+..+|.+.++.....
T Consensus 160 ~~-----------------------------~l~~va~-d~~~~~v~~~~~l~----d~~~~i~~D~~gnl~~l~~~~~~ 205 (321)
T PF03178_consen 160 NN-----------------------------KLILVAR-DYQPRWVTAAEFLV----DEDTIIVGDKDGNLFVLRYNPEI 205 (321)
T ss_dssp TE------------------------------EEEEEE-ESS-BEEEEEEEE-----SSSEEEEEETTSEEEEEEE-SS-
T ss_pred CC-----------------------------EEEEEEe-cCCCccEEEEEEec----CCcEEEEEcCCCeEEEEEECCCC
Confidence 11 1111111 11345688888886 3469999999999999988631
Q ss_pred ------c-eeeeeeeccCCCCeEEE---EEec--CC------CEEEEEECCCcEEEEE
Q psy13856 178 ------V-TWTPFIMNTFDDVVWNV---SWSL--TG------DILTVSCGDNSVSLWK 217 (271)
Q Consensus 178 ------~-~~~~~~~~~h~~~v~~v---~~~~--~g------~~l~s~s~D~~v~iw~ 217 (271)
. ...........+.|+++ ++.| .+ ..++.++.+|.|...-
T Consensus 206 ~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l~ 263 (321)
T PF03178_consen 206 PNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVLI 263 (321)
T ss_dssp SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEEE
T ss_pred cccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEEE
Confidence 1 11111122234567776 4445 12 1377777888887543
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=82.62 E-value=34 Score=30.27 Aligned_cols=63 Identities=10% Similarity=0.162 Sum_probs=33.9
Q ss_pred CCcEEEEEeCCCeEEEEEcCCCceeee-eeeccCCCCeEEEEEecCCCEEEEEECC-----CcEEEEEeCCCCcee
Q psy13856 156 SKCMIASCSQDRKVIIWTSNDYVTWTP-FIMNTFDDVVWNVSWSLTGDILTVSCGD-----NSVSLWKENTDGAWQ 225 (271)
Q Consensus 156 ~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~h~~~v~~v~~~~~g~~l~s~s~D-----~~v~iw~~~~~~~~~ 225 (271)
++.+.+.|+ .+.+||.++.. |.. ..+....... +++ -.+|++.+.|+.+ ..+..||+.++ +|.
T Consensus 407 ~~~IYv~GG---~~e~ydp~~~~-W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~-~W~ 475 (480)
T PHA02790 407 GRRLFLVGR---NAEFYCESSNT-WTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTY-SWN 475 (480)
T ss_pred CCEEEEECC---ceEEecCCCCc-EeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCcccceEEEEECCCC-eEE
Confidence 356666664 46788887644 321 1121111112 122 2367788888754 35788888754 563
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=81.87 E-value=19 Score=26.81 Aligned_cols=35 Identities=23% Similarity=0.560 Sum_probs=28.0
Q ss_pred cceEEEEEccCC-CC-CCcEEEEEeCCCeEEEEEcCC
Q psy13856 142 DWVRDVAWAPSW-GL-SKCMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 142 ~~v~~v~~~p~~-~~-~~~~l~s~~~dg~i~iwd~~~ 176 (271)
..+.+++|+|.+ +. .+++|+....++.|.+|....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 478999999953 11 467899999999999998764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=81.22 E-value=35 Score=29.50 Aligned_cols=53 Identities=13% Similarity=0.115 Sum_probs=35.7
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeecc-CCCCeEEEEEecC
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT-FDDVVWNVSWSLT 200 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~v~~~~~ 200 (271)
+++..++.|| +++++|.-..+|.+.+.+..-.+.+ ..+.. -......+.|+-+
T Consensus 217 ~~i~~iavSp----ng~~iAl~t~~g~l~v~ssDf~~~~--~e~~~~~~~~p~~~~WCG~ 270 (410)
T PF04841_consen 217 GPIIKIAVSP----NGKFIALFTDSGNLWVVSSDFSEKL--CEFDTDSKSPPKQMAWCGN 270 (410)
T ss_pred CCeEEEEECC----CCCEEEEEECCCCEEEEECccccee--EEeecCcCCCCcEEEEECC
Confidence 5799999999 5899999999999988876544432 11111 1234456666654
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 271 | ||||
| 3bg0_A | 316 | Architecture Of A Coat For The Nuclear Pore Membran | 4e-32 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 2e-21 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 5e-21 | ||
| 2pm6_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 1e-20 | ||
| 2pm9_B | 297 | Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O | 1e-20 | ||
| 2pm7_B | 297 | Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF | 2e-20 | ||
| 3fm0_A | 345 | Crystal Structure Of Wd40 Protein Ciao1 Length = 34 | 1e-05 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-05 |
| >pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane Length = 316 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
| >pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297 | Back alignment and structure |
|
| >pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297 | Back alignment and structure |
|
| >pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297 | Back alignment and structure |
|
| >pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 271 | |||
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.97 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.97 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 99.96 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.96 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.96 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.96 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.96 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.96 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 99.96 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.96 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.96 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 99.96 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.96 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.96 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.96 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.96 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.96 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.95 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 99.95 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.95 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.95 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.95 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.95 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.95 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.95 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 99.95 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.95 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.95 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.95 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.94 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.94 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.94 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.94 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.94 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.94 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.94 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.94 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.94 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.94 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.94 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.93 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.93 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.93 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.93 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.93 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.93 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.93 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.92 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.92 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.92 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.92 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.92 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.92 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.92 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.92 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.92 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.92 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.91 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.91 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.91 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.91 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.91 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.91 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.91 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.91 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.91 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.91 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.9 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.9 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.9 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.9 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.9 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.9 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.9 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.9 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.9 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.9 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.9 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.9 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.9 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.9 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.9 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.9 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.9 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.9 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.89 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.89 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.89 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.89 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.89 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.89 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.89 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.89 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.89 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.89 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.89 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.89 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.89 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.89 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.89 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.89 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.88 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.88 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.88 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.88 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.88 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.88 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.88 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.88 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.88 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.88 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.88 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.88 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.88 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.88 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.87 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.87 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.87 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.86 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.85 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.83 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.82 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.79 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.79 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.79 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.77 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.76 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.76 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.76 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.74 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.67 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.65 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.65 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.62 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.62 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.61 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.6 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.59 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.58 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.58 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.57 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.57 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.57 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.54 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.53 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.51 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.5 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.5 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.49 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.49 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.49 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.48 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.47 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.47 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.45 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.44 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.43 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.38 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.38 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.37 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.37 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.37 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.34 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.33 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.29 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.25 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.2 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.18 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.16 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.14 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.14 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.13 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.13 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.12 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.1 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.09 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.09 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.07 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.07 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.04 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.02 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 98.99 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.98 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 98.93 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.92 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 98.92 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 98.91 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 98.87 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 98.86 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 98.85 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 98.85 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 98.84 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 98.83 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.78 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.76 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.72 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 98.63 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.6 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 98.59 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 98.58 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.55 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 98.53 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 98.53 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.52 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.5 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 98.49 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.47 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.46 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.4 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.39 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 98.39 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 98.32 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.3 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.27 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.24 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.07 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.07 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.06 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.03 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.98 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 97.98 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 97.95 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 97.83 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 97.71 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.65 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 97.58 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 97.42 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 97.41 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 97.3 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.28 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.28 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 97.23 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 97.19 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.18 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 97.13 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 97.1 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 97.1 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 97.0 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 96.98 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 96.93 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 96.93 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.9 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 96.87 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 96.78 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.78 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 96.76 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.7 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 96.57 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 96.48 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 96.43 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 96.42 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 96.39 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 96.36 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 96.28 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 96.17 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 96.14 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.99 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 95.87 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 95.81 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 95.8 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.73 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 95.63 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.62 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 95.59 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 95.58 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 95.28 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.26 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 95.17 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 95.11 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 94.97 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 94.74 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 94.55 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 94.29 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 94.12 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.01 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 93.93 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 93.72 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 93.71 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 93.66 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 93.51 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 93.24 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 93.07 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 93.03 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 92.84 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 92.72 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 92.35 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 92.15 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 92.15 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 92.06 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 91.89 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 91.7 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 91.6 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 91.59 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 91.55 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 91.5 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 91.09 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 91.02 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 90.96 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 90.92 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 90.91 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 90.88 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 90.78 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 90.7 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 89.77 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 89.25 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 89.13 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 88.63 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 88.56 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 86.98 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 86.89 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 86.36 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 86.26 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 86.08 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 85.74 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 82.52 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 81.55 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 80.98 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 80.75 |
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=201.79 Aligned_cols=195 Identities=17% Similarity=0.169 Sum_probs=163.9
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
+......+++.++++++.|++|++||+ +..+..|... +.+++|+|++++|++++.|+.+++|+. .++.
T Consensus 83 v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~~~~~~~~~----~~~~~~spdg~~l~~g~~dg~v~i~~~---~~~~ 155 (321)
T 3ow8_A 83 VVSVDISHTLPIAASSSLDAHIRLWDLENGKQIKSIDAGPVD----AWTLAFSPDSQYLATGTHVGKVNIFGV---ESGK 155 (321)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTC----CCCEEECTTSSEEEEECTTSEEEEEET---TTCS
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEECCCCCEEEEEeCCCcc----EEEEEECCCCCEEEEEcCCCcEEEEEc---CCCc
Confidence 344445578999999999999999998 5667788877 899999999999999999999999998 5555
Q ss_pred eeecc-----ceeeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEE
Q psy13856 101 CLQPK-----YFKLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVI 170 (271)
Q Consensus 101 ~~~~~-----~~~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~ 170 (271)
..... ......+++++++++ +.|++.+....+.+..+.+|...|.+++|+| ++.+|++|+.|+.|+
T Consensus 156 ~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~sp----d~~~l~s~s~dg~i~ 231 (321)
T 3ow8_A 156 KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSP----DSQLLVTASDDGYIK 231 (321)
T ss_dssp EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECT----TSCEEEEECTTSCEE
T ss_pred eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcC----CCCEEEEEcCCCeEE
Confidence 44332 224556777788887 7788832222278888999999999999999 699999999999999
Q ss_pred EEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchh
Q psy13856 171 IWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 171 iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
+||++.... ...+.+|...|.+++|+|++.+|++++.|++|++||++++ +++.++.+|...
T Consensus 232 iwd~~~~~~--~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~---~~~~~~~~h~~~ 292 (321)
T 3ow8_A 232 IYDVQHANL--AGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTR---TCVHTFFDHQDQ 292 (321)
T ss_dssp EEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCCSSC
T ss_pred EEECCCcce--eEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---EEEEEEcCCCCc
Confidence 999998876 6788899999999999999999999999999999999877 788888777654
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=203.32 Aligned_cols=183 Identities=19% Similarity=0.111 Sum_probs=147.4
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCC-eEEEEeCCCcEEEEEeecCCCC
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLN-RSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
+......|+|++|++|+.|++|++||+ +..+.+|... |.+++|+|++. +|++++.|++|++||+ +++
T Consensus 130 V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~----V~~~~~~~~~~~~l~s~s~D~~v~iwd~---~~~ 202 (344)
T 4gqb_B 130 VSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ----VTCVAASPHKDSVFLSCSEDNRILLWDT---RCP 202 (344)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECSSCTTEEEEEETTSCEEEEET---TSS
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc----eEEEEecCCCCCceeeeccccccccccc---ccc
Confidence 455556689999999999999999998 7888999999 99999999885 7899999999999999 555
Q ss_pred ceeeccc-------eeeEEEeec-cceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCC
Q psy13856 100 ACLQPKY-------FKLTVYSTK-LTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQD 166 (271)
Q Consensus 100 ~~~~~~~-------~~~~~~~~~-~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d 166 (271)
++..... .....+... +++++ +.|++.+....+++..+.+|...|++++|+|+ ...+|++|+.|
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~---g~~~lasgs~D 279 (344)
T 4gqb_B 203 KPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPH---SVPFLASLSED 279 (344)
T ss_dssp SCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSS---SSCCEEEEETT
T ss_pred ceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccC---CCeEEEEEeCC
Confidence 5554331 123334443 45555 78898332223778899999999999999994 34689999999
Q ss_pred CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCC-EEEEEECCCcEEEEEeCCC
Q psy13856 167 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGD-ILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~v~iw~~~~~ 221 (271)
++|++||.++++ ...+.+|.+.|++++|+|++. +|++++.|++|++|++.+.
T Consensus 280 ~~i~vwd~~~~~---~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~v~~~ 332 (344)
T 4gqb_B 280 CSLAVLDSSLSE---LFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTE 332 (344)
T ss_dssp SCEEEECTTCCE---EEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECCC-
T ss_pred CeEEEEECCCCc---EEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEECCCC
Confidence 999999998876 456789999999999999975 6779999999999999754
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.1e-28 Score=197.97 Aligned_cols=209 Identities=11% Similarity=0.104 Sum_probs=164.9
Q ss_pred eeceeEeeccccccceecccCCC----CCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCCe
Q psy13856 10 SCDGLLMTLKPTLEIETYTESPL----RIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNR 78 (271)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~----~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~ 78 (271)
+.-|.+......++-.++..... +++.+|++|+.|++|++|++ ...+.+|... |.+++|++++..
T Consensus 19 ~~~g~~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~----v~~~~~~~~~~~ 94 (321)
T 3ow8_A 19 NQYGILFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLG----VVSVDISHTLPI 94 (321)
T ss_dssp --CEEEEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC----EEEEEECSSSSE
T ss_pred hhhhheeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCC----EEEEEECCCCCE
Confidence 33455544333444444444443 35789999999999999997 3457899999 999999999999
Q ss_pred EEEEeCCCcEEEEEeecCCCCceeeccc-----eeeEEEeeccceee-----eEEEE--eeCCceEEeEEecCCCcceEE
Q psy13856 79 SATSSFHEAAKHLGTVQSSSPACLQPKY-----FKLTVYSTKLTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRD 146 (271)
Q Consensus 79 l~s~s~d~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~ 146 (271)
+++++.|++|++||+ .+++++.... .....++++++.++ +.+++ ...+ .....+..|...|.+
T Consensus 95 l~s~s~D~~i~lWd~---~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~--~~~~~~~~~~~~v~~ 169 (321)
T 3ow8_A 95 AASSSLDAHIRLWDL---ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG--KKEYSLDTRGKFILS 169 (321)
T ss_dssp EEEEETTSEEEEEET---TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC--SEEEEEECSSSCEEE
T ss_pred EEEEeCCCcEEEEEC---CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC--ceeEEecCCCceEEE
Confidence 999999999999998 6666655441 23456777788877 78888 2333 566778889999999
Q ss_pred EEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeE
Q psy13856 147 VAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQC 226 (271)
Q Consensus 147 v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~ 226 (271)
++|+| ++.+|++|+.|+.|++||+++++. ...+.+|..+|++++|+|++.+|++++.|+.|++||++.. +.
T Consensus 170 ~~~sp----dg~~lasg~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~ 240 (321)
T 3ow8_A 170 IAYSP----DGKYLASGAIDGIINIFDIATGKL--LHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NL 240 (321)
T ss_dssp EEECT----TSSEEEEEETTSCEEEEETTTTEE--EEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CE
T ss_pred EEECC----CCCEEEEEcCCCeEEEEECCCCcE--EEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---ce
Confidence 99999 799999999999999999998876 6778899999999999999999999999999999999876 55
Q ss_pred EEEecccchh
Q psy13856 227 ITEMGKTSEQ 236 (271)
Q Consensus 227 ~~~~~~~~~~ 236 (271)
...+.+|...
T Consensus 241 ~~~~~~h~~~ 250 (321)
T 3ow8_A 241 AGTLSGHASW 250 (321)
T ss_dssp EEEECCCSSC
T ss_pred eEEEcCCCCc
Confidence 5666666543
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=195.32 Aligned_cols=199 Identities=14% Similarity=0.159 Sum_probs=161.9
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
.+......|++++|++|+.||+|++||+ +..+..|... |.+++|+|++++|++|+.|++|++||. .++
T Consensus 15 ~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~s~d~~i~vwd~---~~~ 87 (304)
T 2ynn_A 15 RVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETP----VRAGKFIARKNWIIVGSDDFRIRVFNY---NTG 87 (304)
T ss_dssp CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEEEGGGTEEEEEETTSEEEEEET---TTC
T ss_pred ceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCc----EEEEEEeCCCCEEEEECCCCEEEEEEC---CCC
Confidence 3455556679999999999999999998 6778889998 999999999999999999999999998 666
Q ss_pred ceeecc-ce----eeEEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCe
Q psy13856 100 ACLQPK-YF----KLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK 168 (271)
Q Consensus 100 ~~~~~~-~~----~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~ 168 (271)
+++... .+ ....+++++.+++ +.|++ ...........+.+|...|.+++|+|. ++.+|++|+.|+.
T Consensus 88 ~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~---~~~~l~sgs~D~~ 164 (304)
T 2ynn_A 88 EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK---DPSTFASGCLDRT 164 (304)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTT---CTTEEEEEETTSE
T ss_pred cEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCC---CCCEEEEEeCCCe
Confidence 666544 22 4455666677777 88888 322222566788999999999999996 6899999999999
Q ss_pred EEEEEcCCCceeeeeeeccCCCCeEEEEEec--CCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhh
Q psy13856 169 VIIWTSNDYVTWTPFIMNTFDDVVWNVSWSL--TGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQR 237 (271)
Q Consensus 169 i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~--~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 237 (271)
|++||++..... .....+|...+..++|+| ++.+|++++.|++|++||++++ +++.++.+|....
T Consensus 165 v~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v 231 (304)
T 2ynn_A 165 VKVWSLGQSTPN-FTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNV 231 (304)
T ss_dssp EEEEETTCSSCS-EEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCE
T ss_pred EEEEECCCCCcc-ceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCE
Confidence 999999876642 333456678899999987 6789999999999999999877 7778888776543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-28 Score=205.76 Aligned_cols=199 Identities=17% Similarity=0.237 Sum_probs=162.1
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
+......+++.+|++|+.|++|++||+ +..+.+|... |.+++|+|++++|++|+.|++|++||. .++.
T Consensus 153 V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~----V~~v~~~p~~~~l~s~s~D~~i~~wd~---~~~~ 225 (410)
T 1vyh_C 153 VQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHN----VSSVSIMPNGDHIVSASRDKTIKMWEV---QTGY 225 (410)
T ss_dssp EEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSC----EEEEEECSSSSEEEEEETTSEEEEEET---TTCC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCC----EEEEEEeCCCCEEEEEeCCCeEEEEEC---CCCc
Confidence 344445679999999999999999998 6778899999 999999999999999999999999999 7777
Q ss_pred eeecc-ce----eeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCC----------------
Q psy13856 101 CLQPK-YF----KLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWG---------------- 154 (271)
Q Consensus 101 ~~~~~-~~----~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~---------------- 154 (271)
++... .+ ....+..++..++ +.|++++.........+.+|...|.+++|+|...
T Consensus 226 ~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (410)
T 1vyh_C 226 CVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSG 305 (410)
T ss_dssp EEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-----
T ss_pred EEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccC
Confidence 76554 22 3344555677776 7888833222267788899999999999998410
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccc
Q psy13856 155 LSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 155 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
..+.+|++|+.|+.|++||++++.+ ...+.+|...|.+++|+|+|.+|++++.|++|++||+.++ +++..+.+|.
T Consensus 306 ~~g~~l~sgs~D~~i~iwd~~~~~~--~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---~~~~~~~~h~ 380 (410)
T 1vyh_C 306 KPGPFLLSGSRDKTIKMWDVSTGMC--LMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHE 380 (410)
T ss_dssp --CCEEEEEETTSEEEEEETTTTEE--EEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECCS
T ss_pred CCCCEEEEEeCCCeEEEEECCCCce--EEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCCC
Confidence 0156899999999999999999876 6788899999999999999999999999999999999876 4556666665
Q ss_pred hh
Q psy13856 235 EQ 236 (271)
Q Consensus 235 ~~ 236 (271)
..
T Consensus 381 ~~ 382 (410)
T 1vyh_C 381 HF 382 (410)
T ss_dssp SC
T ss_pred Cc
Confidence 43
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=192.74 Aligned_cols=193 Identities=13% Similarity=0.061 Sum_probs=152.8
Q ss_pred cCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC-cee
Q psy13856 29 ESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP-ACL 102 (271)
Q Consensus 29 ~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~-~~~ 102 (271)
....+++++|++|+.|++|++||+ +..+.+|.+. |.+++|+|++++|++|+.|++|++||. +.+ .+.
T Consensus 61 ~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~sgs~D~~v~lWd~---~~~~~~~ 133 (304)
T 2ynn_A 61 GKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY----IRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWALE 133 (304)
T ss_dssp EEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSSSEEEEEETTSCEEEEEG---GGTTEEE
T ss_pred EEEeCCCCEEEEECCCCEEEEEECCCCcEEEEEeCCCCc----EEEEEEcCCCCEEEEECCCCeEEEEEC---CCCcchh
Confidence 344578999999999999999998 6778899999 999999999999999999999999998 444 222
Q ss_pred ecc-ce----eeEEEee-ccceee-----eEEEEeeCCceEEe-EEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEE
Q psy13856 103 QPK-YF----KLTVYST-KLTRIL-----ILVRICGGDKWIEE-TKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVI 170 (271)
Q Consensus 103 ~~~-~~----~~~~~~~-~~~~l~-----~~v~i~~~~~~~~~-~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~ 170 (271)
... .+ ....+++ ++..++ +.|++++-...... ....+|...+..+.|+|.. ++.+|++|+.|+.|+
T Consensus 134 ~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~s~s~D~~i~ 211 (304)
T 2ynn_A 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP--DKPYMITASDDLTIK 211 (304)
T ss_dssp EEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCST--TCCEEEEEETTSEEE
T ss_pred hhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcC--CCCEEEEEcCCCeEE
Confidence 222 22 3344554 355666 88888322111222 3334567889999998742 578999999999999
Q ss_pred EEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccch
Q psy13856 171 IWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSE 235 (271)
Q Consensus 171 iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 235 (271)
+||++++.+ ...+.+|...|.+++|+|++.+|++++.|++|++||+++. +....+..+..
T Consensus 212 iWd~~~~~~--~~~~~~h~~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~---~~~~~~~~~~~ 271 (304)
T 2ynn_A 212 IWDYQTKSC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLNVGLE 271 (304)
T ss_dssp EEETTTTEE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---CEEEEECCSSS
T ss_pred EEeCCCCcc--ceeeCCCCCCEEEEEECCCCCEEEEEcCCCeEEEEECCCC---ceeeeccCCCc
Confidence 999999876 7788999999999999999999999999999999999876 66677766543
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=198.57 Aligned_cols=184 Identities=21% Similarity=0.299 Sum_probs=151.3
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc--------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecC
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST--------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQS 96 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~ 96 (271)
..+.....|+|++||+|+.|++|++||. .....+|... |.+++|+|++++|++|+.|+++++|+.
T Consensus 18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~----v~~~~~sp~g~~l~s~s~D~~v~iw~~--- 90 (345)
T 3fm0_A 18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRT----VRKVAWSPCGNYLASASFDATTCIWKK--- 90 (345)
T ss_dssp CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSC----EEEEEECTTSSEEEEEETTSCEEEEEE---
T ss_pred cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCc----EEEEEECCCCCEEEEEECCCcEEEEEc---
Confidence 4555666779999999999999999998 1123689998 999999999999999999999999998
Q ss_pred CCC--ceeecc-c----eeeEEEeeccceee-----eEEEE--ee-CCceEEeEEecCCCcceEEEEEccCCCCCCcEEE
Q psy13856 97 SSP--ACLQPK-Y----FKLTVYSTKLTRIL-----ILVRI--CG-GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIA 161 (271)
Q Consensus 97 ~~~--~~~~~~-~----~~~~~~~~~~~~l~-----~~v~i--~~-~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~ 161 (271)
..+ .+.... . .....+++++++++ +.|++ .. ......+..+.+|...|.+++|+| ++.+|+
T Consensus 91 ~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p----~~~~l~ 166 (345)
T 3fm0_A 91 NQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP----SQELLA 166 (345)
T ss_dssp CCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS----SSSCEE
T ss_pred cCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC----CCCEEE
Confidence 433 233332 2 24455667788887 77888 22 233456778899999999999999 699999
Q ss_pred EEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 162 SCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 162 s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
+|+.|+.|++||.+.........+.+|...|++++|+|+|.+|++++.|++|+||+..
T Consensus 167 s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~ 224 (345)
T 3fm0_A 167 SASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQY 224 (345)
T ss_dssp EEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred EEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccc
Confidence 9999999999999887543356788999999999999999999999999999999974
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-27 Score=194.07 Aligned_cols=193 Identities=13% Similarity=0.165 Sum_probs=155.4
Q ss_pred ecccCCCCC-CCEEEEccCCCeEEeccc----------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEee
Q psy13856 26 TYTESPLRI-GHTLISCDTQAHIGIRST----------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTV 94 (271)
Q Consensus 26 ~~~~~~~~~-g~~l~s~s~d~~i~lwd~----------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~ 94 (271)
+......++ +++|++|+.|++|++|++ +..+.+|... |.+++|+|++++|++|+.|++|++||.
T Consensus 20 V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~----v~~~~~s~dg~~l~s~s~D~~v~~wd~- 94 (319)
T 3frx_A 20 VTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI----VQDCTLTADGAYALSASWDKTLRLWDV- 94 (319)
T ss_dssp EEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSC----EEEEEECTTSSEEEEEETTSEEEEEET-
T ss_pred EEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCccc----EEEEEECCCCCEEEEEeCCCEEEEEEC-
Confidence 344444454 479999999999999987 4567899999 999999999999999999999999999
Q ss_pred cCCCCceeecc-ce----eeEEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCC--CCCcEEE
Q psy13856 95 QSSSPACLQPK-YF----KLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWG--LSKCMIA 161 (271)
Q Consensus 95 ~~~~~~~~~~~-~~----~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~--~~~~~l~ 161 (271)
.+++++... .+ ....+..++..++ +.|++ ...+ ..+..+.+|...|.++.|.|... .++.+++
T Consensus 95 --~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~ 170 (319)
T 3frx_A 95 --ATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTII 170 (319)
T ss_dssp --TTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEEE
T ss_pred --CCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEE
Confidence 777766554 22 3334555567776 78888 4444 57788899999999999998421 1345899
Q ss_pred EEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 162 SCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 162 s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
+++.|+.|++||+++... ...+.+|...|++++|+|+|.+|++++.|++|++||+... +.+..+..
T Consensus 171 s~~~d~~i~~wd~~~~~~--~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~ 236 (319)
T 3frx_A 171 SAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA 236 (319)
T ss_dssp EEETTSCEEEEETTTTEE--EEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC
T ss_pred EEeCCCEEEEEECCcchh--heeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC
Confidence 999999999999998775 6678899999999999999999999999999999999876 45555543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-27 Score=201.52 Aligned_cols=195 Identities=17% Similarity=0.213 Sum_probs=163.8
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
+......|++.+|++|+.|++|++||+ ...+.+|.+. |.+++|+|++++|++|+.|++|++||. ...+
T Consensus 111 V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~----V~~v~~~~~~~~l~sgs~D~~i~iwd~---~~~~ 183 (410)
T 1vyh_C 111 VTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDS----VQDISFDHSGKLLASCSADMTIKLWDF---QGFE 183 (410)
T ss_dssp EEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSC----EEEEEECTTSSEEEEEETTSCCCEEET---TSSC
T ss_pred EEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCc----EEEEEEcCCCCEEEEEeCCCeEEEEeC---CCCc
Confidence 344445678999999999999999998 6788999999 999999999999999999999999998 6666
Q ss_pred eeecc-c----eeeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEE
Q psy13856 101 CLQPK-Y----FKLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVI 170 (271)
Q Consensus 101 ~~~~~-~----~~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~ 170 (271)
++... . .....+.++++.++ +.|++++-..-.++..+.+|...|.++.++| ++.+|++|+.|+.|+
T Consensus 184 ~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~----~g~~l~s~s~D~~v~ 259 (410)
T 1vyh_C 184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQ----DGTLIASCSNDQTVR 259 (410)
T ss_dssp EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT----TSSEEEEEETTSCEE
T ss_pred eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECC----CCCEEEEEcCCCeEE
Confidence 66554 2 24445566677776 8888833222267888999999999999999 699999999999999
Q ss_pred EEEcCCCceeeeeeeccCCCCeEEEEEecC--------------------CCEEEEEECCCcEEEEEeCCCCceeEEEEe
Q psy13856 171 IWTSNDYVTWTPFIMNTFDDVVWNVSWSLT--------------------GDILTVSCGDNSVSLWKENTDGAWQCITEM 230 (271)
Q Consensus 171 iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~--------------------g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 230 (271)
+||++++.+ ...+.+|...|.+++|+|+ |.+|++|+.|++|++||++++ .++..+
T Consensus 260 vwd~~~~~~--~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~ 334 (410)
T 1vyh_C 260 VWVVATKEC--KAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTL 334 (410)
T ss_dssp EEETTTCCE--EEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEE
T ss_pred EEECCCCce--eeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEE
Confidence 999998876 6778899999999999996 678999999999999999877 667777
Q ss_pred cccchh
Q psy13856 231 GKTSEQ 236 (271)
Q Consensus 231 ~~~~~~ 236 (271)
.+|...
T Consensus 335 ~~h~~~ 340 (410)
T 1vyh_C 335 VGHDNW 340 (410)
T ss_dssp ECCSSC
T ss_pred ECCCCc
Confidence 766543
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.5e-28 Score=200.03 Aligned_cols=185 Identities=15% Similarity=0.050 Sum_probs=146.3
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCC-eEEEEeCCCcEEEEEeecCCCC
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLN-RSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
+......|+|++|++|+.|+.|++||. +..+.+|... |.+++|+|++. .+++++.|++|++||. +++
T Consensus 142 V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~----v~~v~~s~~~~~~~~s~~~dg~v~~wd~---~~~ 214 (357)
T 4g56_B 142 VKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSE----VNCVAACPGKDTIFLSCGEDGRILLWDT---RKP 214 (357)
T ss_dssp EEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTCSSCEEEEETTSCEEECCT---TSS
T ss_pred EEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCC----EEEEEEccCCCceeeeeccCCceEEEEC---CCC
Confidence 445556689999999999999999998 6778899999 99999999875 7899999999999998 444
Q ss_pred ceeecc---c----eeeEEEeec-cceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCC
Q psy13856 100 ACLQPK---Y----FKLTVYSTK-LTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQD 166 (271)
Q Consensus 100 ~~~~~~---~----~~~~~~~~~-~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d 166 (271)
+..... . .....++++ +.+++ +.|++.+....+....+.+|...|++++|+|. ++.+|++|+.|
T Consensus 215 ~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~---~~~~lasgs~D 291 (357)
T 4g56_B 215 KPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYH---SSPFLASISED 291 (357)
T ss_dssp SCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSS---SSCCEEEEETT
T ss_pred ceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCC---CCCEEEEEeCC
Confidence 443322 1 133445554 44555 67888322222677888999999999999995 45789999999
Q ss_pred CeEEEEEcCCCceeeeeeeccCCCCeEEEEEec-CCCEEEEEECCCcEEEEEeCCCCc
Q psy13856 167 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSL-TGDILTVSCGDNSVSLWKENTDGA 223 (271)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~v~iw~~~~~~~ 223 (271)
++|++||+++++. ....+|.+.|++++|+| ++.+|++++.|++|++|++...++
T Consensus 292 ~~i~iwd~~~~~~---~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~ 346 (357)
T 4g56_B 292 CTVAVLDADFSEV---FRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR 346 (357)
T ss_dssp SCEEEECTTSCEE---EEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred CEEEEEECCCCcE---eEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence 9999999998774 34458999999999998 799999999999999999976543
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-26 Score=196.16 Aligned_cols=197 Identities=16% Similarity=0.137 Sum_probs=154.7
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
......|+|++|++|+.|+.|++||+ +..+.+|... |.+++|+|++++|++++.|++|++||+ .++++
T Consensus 127 ~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~----v~~~~~~p~~~~l~s~s~d~~v~iwd~---~~~~~ 199 (393)
T 1erj_A 127 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD----IYSLDYFPSGDKLVSGSGDRTVRIWDL---RTGQC 199 (393)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEETTSEEEEEET---TTTEE
T ss_pred EEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCC----EEEEEEcCCCCEEEEecCCCcEEEEEC---CCCee
Confidence 34455679999999999999999998 6778899999 999999999999999999999999998 66666
Q ss_pred eeccc----eeeEEEee-ccceee-----eEEEEeeCCceEEeEEe-------cCCCcceEEEEEccCCCCCCcEEEEEe
Q psy13856 102 LQPKY----FKLTVYST-KLTRIL-----ILVRICGGDKWIEETKL-------ENHSDWVRDVAWAPSWGLSKCMIASCS 164 (271)
Q Consensus 102 ~~~~~----~~~~~~~~-~~~~l~-----~~v~i~~~~~~~~~~~~-------~~h~~~v~~v~~~p~~~~~~~~l~s~~ 164 (271)
..... .....++. ++++++ +.|++.+...-..+..+ .+|...|.+++|+| ++.+|++|+
T Consensus 200 ~~~~~~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~----~g~~l~s~s 275 (393)
T 1erj_A 200 SLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR----DGQSVVSGS 275 (393)
T ss_dssp EEEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT----TSSEEEEEE
T ss_pred EEEEEcCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECC----CCCEEEEEe
Confidence 54442 23344444 566776 77888322111344444 57999999999999 699999999
Q ss_pred CCCeEEEEEcCCCce----------eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccc
Q psy13856 165 QDRKVIIWTSNDYVT----------WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 165 ~dg~i~iwd~~~~~~----------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
.|+.|++||+++... .....+.+|...|.+++|+|++.+|++++.|+.|++||+.++ +.+..+.+|.
T Consensus 276 ~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~ 352 (393)
T 1erj_A 276 LDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHR 352 (393)
T ss_dssp TTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCS
T ss_pred CCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCC
Confidence 999999999976321 113456789999999999999999999999999999999877 5667777776
Q ss_pred hhh
Q psy13856 235 EQR 237 (271)
Q Consensus 235 ~~~ 237 (271)
...
T Consensus 353 ~~v 355 (393)
T 1erj_A 353 NSV 355 (393)
T ss_dssp SCE
T ss_pred CCE
Confidence 543
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=196.73 Aligned_cols=191 Identities=7% Similarity=0.010 Sum_probs=146.4
Q ss_pred cCCCCCCCEEEEccCCCeEEeccc---------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC
Q psy13856 29 ESPLRIGHTLISCDTQAHIGIRST---------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 29 ~~~~~~g~~l~s~s~d~~i~lwd~---------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
....++ ..|++|+.||+|+|||+ ...+.+|.+. |++++|+|++++|++|+.|++|++||+ .++
T Consensus 88 ~~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~----V~~v~~spdg~~l~sgs~d~~i~iwd~---~~~ 159 (344)
T 4gqb_B 88 LTWVGE-RGILVASDSGAVELWELDENETLIVSKFCKYEHDDI----VSTVSVLSSGTQAVSGSKDICIKVWDL---AQQ 159 (344)
T ss_dssp EEEETT-TEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSC----EEEEEECTTSSEEEEEETTSCEEEEET---TTT
T ss_pred EEEeCC-CeEEEEECCCEEEEEeccCCCceeEeeccccCCCCC----EEEEEECCCCCEEEEEeCCCeEEEEEC---CCC
Confidence 334455 46889999999999998 1234589999 999999999999999999999999999 777
Q ss_pred ceeecc-ce----eeEEEeeccc-eee-----eEEEEeeCCceEEeEEe--cCCCcceEEEEEccCCCCCCcEEEEEeCC
Q psy13856 100 ACLQPK-YF----KLTVYSTKLT-RIL-----ILVRICGGDKWIEETKL--ENHSDWVRDVAWAPSWGLSKCMIASCSQD 166 (271)
Q Consensus 100 ~~~~~~-~~----~~~~~~~~~~-~l~-----~~v~i~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~~~~~l~s~~~d 166 (271)
+++... .+ ....++.++. .++ +.|++++....+....+ ..|...+.+++|+|. ++.+|++|+.|
T Consensus 160 ~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~l~sg~~d 236 (344)
T 4gqb_B 160 VVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQ---QSEVFVFGDEN 236 (344)
T ss_dssp EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSS---CTTEEEEEETT
T ss_pred cEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCC---CCcceEEeccC
Confidence 777665 22 3344555554 444 77888322211444444 345667999999996 68899999999
Q ss_pred CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCC-CEEEEEECCCcEEEEEeCCCCceeEEEEecccchh
Q psy13856 167 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTG-DILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
|.|++||++++++ ...+.+|...|++++|+|++ .+|++|+.|++|+|||++++ + +.++.+|...
T Consensus 237 g~v~~wd~~~~~~--~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~~ 301 (344)
T 4gqb_B 237 GTVSLVDTKSTSC--VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRDF 301 (344)
T ss_dssp SEEEEEESCC--C--CEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSSC
T ss_pred CcEEEEECCCCcE--EEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCCC
Confidence 9999999999886 77889999999999999997 68999999999999999865 3 3456676654
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=191.93 Aligned_cols=188 Identities=11% Similarity=0.100 Sum_probs=150.9
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
-.++.....|++++|++|+.|++|++||. +..+..|... |.+++|+|++++|++|+.|+.+++|+......
T Consensus 56 ~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~ 131 (340)
T 1got_B 56 AKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSW----VMTCAYAPSGNYVACGGLDNICSIYNLKTREG 131 (340)
T ss_dssp SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSC----EEEEEECTTSSEEEEEETTCEEEEEETTTCSB
T ss_pred CceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCcc----EEEEEECCCCCEEEEEeCCCeEEEEECccCCC
Confidence 34455555679999999999999999998 6677889998 99999999999999999999999999832111
Q ss_pred C-ceeecc-ce----eeEEEeeccceee----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCe
Q psy13856 99 P-ACLQPK-YF----KLTVYSTKLTRIL----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK 168 (271)
Q Consensus 99 ~-~~~~~~-~~----~~~~~~~~~~~l~----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~ 168 (271)
. ...... .+ ....+..++..+. +.|++++.........+.+|.+.|.+++|+| ++.++++|+.|+.
T Consensus 132 ~~~~~~~~~~h~~~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~sg~~d~~ 207 (340)
T 1got_B 132 NVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAP----DTRLFVSGACDAS 207 (340)
T ss_dssp SCEEEEEEECCSSCEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT----TSSEEEEEETTSC
T ss_pred cceeEEEecCCCccEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECC----CCCEEEEEeCCCc
Confidence 1 111111 11 2233444444333 7788833222277888999999999999999 6999999999999
Q ss_pred EEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 169 VIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 169 i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
|++||++++.. ...+.+|...|++++|+|++.+|++++.|++|++||++.+
T Consensus 208 v~~wd~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~ 258 (340)
T 1got_B 208 AKLWDVREGMC--RQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD 258 (340)
T ss_dssp EEEEETTTCSE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred EEEEECCCCee--EEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC
Confidence 99999998876 6788899999999999999999999999999999999876
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-26 Score=192.61 Aligned_cols=188 Identities=24% Similarity=0.288 Sum_probs=142.7
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
+......|+|++|++|+.|++|++|+. +..+.+|... |.+++|+|++++|++|+.|++|++||+.....
T Consensus 64 v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~----v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~ 139 (345)
T 3fm0_A 64 VRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENE----VKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE 139 (345)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSC----EEEEEECTTSSEEEEEETTSCEEEEEECTTSC
T ss_pred EEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCC----ceEEEEeCCCCEEEEEECCCeEEEEECCCCCC
Confidence 444555679999999999999999987 4677899999 99999999999999999999999999843222
Q ss_pred Cceeecc-----ceeeEEEeeccceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCC
Q psy13856 99 PACLQPK-----YFKLTVYSTKLTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQD 166 (271)
Q Consensus 99 ~~~~~~~-----~~~~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d 166 (271)
..++... ......++++++.++ +.|++ ...+.+.+...+.+|...|.+++|+| ++.+|++|+.|
T Consensus 140 ~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp----~g~~l~s~s~D 215 (345)
T 3fm0_A 140 YECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDP----SGQRLASCSDD 215 (345)
T ss_dssp EEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECT----TSSEEEEEETT
T ss_pred eEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECC----CCCEEEEEeCC
Confidence 2333322 224456677787777 77888 44554566788999999999999999 69999999999
Q ss_pred CeEEEEEcCCCce--------------------------------------------------e---------------e
Q psy13856 167 RKVIIWTSNDYVT--------------------------------------------------W---------------T 181 (271)
Q Consensus 167 g~i~iwd~~~~~~--------------------------------------------------~---------------~ 181 (271)
++|++|+...... | .
T Consensus 216 ~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~ 295 (345)
T 3fm0_A 216 RTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLT 295 (345)
T ss_dssp SCEEEEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEE
T ss_pred CeEEEeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEE
Confidence 9999998632100 0 0
Q ss_pred eeeeccCCCCeEEEEEecCC-CEEEEEECCCcEEEEEeCCC
Q psy13856 182 PFIMNTFDDVVWNVSWSLTG-DILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 182 ~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~v~iw~~~~~ 221 (271)
.....+|...|++++|+|++ .+|++|+.||+|++|++...
T Consensus 296 ~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~ 336 (345)
T 3fm0_A 296 AHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRP 336 (345)
T ss_dssp EEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-
T ss_pred eeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCC
Confidence 00123577788888888876 47888888888888887765
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.5e-27 Score=195.99 Aligned_cols=190 Identities=12% Similarity=0.041 Sum_probs=136.2
Q ss_pred cCCCCCCCEEE--EccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 29 ESPLRIGHTLI--SCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 29 ~~~~~~g~~l~--s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
....|||++++ +++.|++|++||+ +..+ .|... |.+++|+|||+++++++.++ +++|+. .++..
T Consensus 139 v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~-~~~~~----V~~v~fspdg~~l~s~s~~~-~~~~~~---~~~~~ 209 (365)
T 4h5i_A 139 VYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEI-ETRGE----VKDLHFSTDGKVVAYITGSS-LEVIST---VTGSC 209 (365)
T ss_dssp EEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEE-ECSSC----CCEEEECTTSSEEEEECSSC-EEEEET---TTCCE
T ss_pred EEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEe-CCCCc----eEEEEEccCCceEEecccee-EEEEEe---ccCcc
Confidence 33457999865 5668999999999 3334 46677 99999999999999998665 557776 44444
Q ss_pred eecc-------ceeeEEEeeccceee-----e----EEEE--eeCCc--eEEeEEecCCCcceEEEEEccCCCCCCcEEE
Q psy13856 102 LQPK-------YFKLTVYSTKLTRIL-----I----LVRI--CGGDK--WIEETKLENHSDWVRDVAWAPSWGLSKCMIA 161 (271)
Q Consensus 102 ~~~~-------~~~~~~~~~~~~~l~-----~----~v~i--~~~~~--~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~ 161 (271)
.... ......++++++.++ + .+++ ..... ......+.+|...|++++|+| ++.+||
T Consensus 210 ~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp----dg~~la 285 (365)
T 4h5i_A 210 IARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM----KGELAV 285 (365)
T ss_dssp EEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT----TSCEEE
T ss_pred eeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC----CCCceE
Confidence 3221 124455677777766 1 3333 22221 123456788999999999999 799999
Q ss_pred EEeCCCeEEEEEcCCCceeeeee-eccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC-----ceeEEEEeccc
Q psy13856 162 SCSQDRKVIIWTSNDYVTWTPFI-MNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG-----AWQCITEMGKT 233 (271)
Q Consensus 162 s~~~dg~i~iwd~~~~~~~~~~~-~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~-----~~~~~~~~~~~ 233 (271)
+|+.|++|+|||+++++. ... +.+|..+|++|+|+|||++|+++|.|++|+||++..+- .++.+.+++.|
T Consensus 286 sgs~D~~V~iwd~~~~~~--~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~~~~~~s~~~~l~kl~~~ 361 (365)
T 4h5i_A 286 LASNDNSIALVKLKDLSM--SKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLNYANYTSMKQKISKLEHH 361 (365)
T ss_dssp EEETTSCEEEEETTTTEE--EEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTTTTC--------------
T ss_pred EEcCCCEEEEEECCCCcE--EEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCCCcCccCccccceeeecc
Confidence 999999999999999876 444 57899999999999999999999999999999996431 24555555544
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-26 Score=188.10 Aligned_cols=193 Identities=32% Similarity=0.573 Sum_probs=143.9
Q ss_pred CCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCC--CCeEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 34 IGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPK--LNRSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
++++|++|+.|++|++||+ +..+.+|... |.+++|+|+ +.+|++++.|++|++||............
T Consensus 66 ~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~----v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~ 141 (297)
T 2pm7_B 66 FGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSAS----VNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIII 141 (297)
T ss_dssp GCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSC----EEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEE
T ss_pred cCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCc----eeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeee
Confidence 5899999999999999998 3456778888 999999997 88999999999999999842211111111
Q ss_pred cc----eeeEEEeec-------------cceee-----eEEEE--eeCC--ceEEeEEecCCCcceEEEEEccCCCCCCc
Q psy13856 105 KY----FKLTVYSTK-------------LTRIL-----ILVRI--CGGD--KWIEETKLENHSDWVRDVAWAPSWGLSKC 158 (271)
Q Consensus 105 ~~----~~~~~~~~~-------------~~~l~-----~~v~i--~~~~--~~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 158 (271)
.. .....+++. ++.++ +.|++ ...+ .+.....+.+|...|.+++|+|.. ..+.
T Consensus 142 ~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~-~~~~ 220 (297)
T 2pm7_B 142 DAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTV-LLRS 220 (297)
T ss_dssp ECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCC-SSSE
T ss_pred ecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCC-CCce
Confidence 11 123334433 34565 77888 2322 234677889999999999999940 0148
Q ss_pred EEEEEeCCCeEEEEEcCCCce-eeeeee--ccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEec
Q psy13856 159 MIASCSQDRKVIIWTSNDYVT-WTPFIM--NTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 159 ~l~s~~~dg~i~iwd~~~~~~-~~~~~~--~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
+|++|+.|++|++||++.... +....+ ..|...|++++|+|+|++|++++.|+.|++|+.+..+.|+++.++.
T Consensus 221 ~las~s~D~~v~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~~g~w~~~~~~~ 296 (297)
T 2pm7_B 221 YMASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 296 (297)
T ss_dssp EEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEC----
T ss_pred EEEEEECCCcEEEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECCCCcEEeccccc
Confidence 999999999999999987431 112233 5788899999999999999999999999999998888898887664
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-27 Score=192.21 Aligned_cols=197 Identities=39% Similarity=0.665 Sum_probs=147.8
Q ss_pred CCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCC--CCeEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 34 IGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPK--LNRSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
++.+|++|+.|++|++||+ ...+.+|... |.+++|+|+ +.+|++|+.|++|++|+............
T Consensus 70 ~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~----V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~ 145 (316)
T 3bg1_A 70 YGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSS----VNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKI 145 (316)
T ss_dssp GSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSC----CCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred CCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCc----eEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeee
Confidence 5899999999999999998 3456789998 999999997 78999999999999999842111011111
Q ss_pred c-c----eeeEEEeec-----------------cceee-----eEEEE-ee--CCceEEeEEecCCCcceEEEEEccCCC
Q psy13856 105 K-Y----FKLTVYSTK-----------------LTRIL-----ILVRI-CG--GDKWIEETKLENHSDWVRDVAWAPSWG 154 (271)
Q Consensus 105 ~-~----~~~~~~~~~-----------------~~~l~-----~~v~i-~~--~~~~~~~~~~~~h~~~v~~v~~~p~~~ 154 (271)
. . .....+++. +++++ +.|++ .. .+.+.....+.+|...|.+++|+|...
T Consensus 146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~ 225 (316)
T 3bg1_A 146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG 225 (316)
T ss_dssp TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence 1 1 122223332 24555 67887 22 233467788899999999999999411
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCc--eeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 155 LSKCMIASCSQDRKVIIWTSNDYV--TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 155 ~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
.++.+|++|+.|++|++|+++... .+....+..|...|++++|+|++.+|++++.|++|++|+....+.|.++.++..
T Consensus 226 ~~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~~g~~~~~~~~~~ 305 (316)
T 3bg1_A 226 LPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNK 305 (316)
T ss_dssp CSCCEEEEEETTCEEEEEECSSTTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEECTTSCEEEEEECC-
T ss_pred CCCceEEEEcCCCeEEEEEccCccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECCCCcEEEeeeccC
Confidence 113899999999999999997631 111345677899999999999999999999999999999988889999998876
Q ss_pred cc
Q psy13856 233 TS 234 (271)
Q Consensus 233 ~~ 234 (271)
..
T Consensus 306 ~~ 307 (316)
T 3bg1_A 306 GQ 307 (316)
T ss_dssp --
T ss_pred CC
Confidence 43
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=4.2e-26 Score=187.52 Aligned_cols=189 Identities=20% Similarity=0.304 Sum_probs=149.6
Q ss_pred CCCEEEEccCCCeEEeccc--------------eeeeccccccccccceEEEEcCC--CCeEEEEeCCCcEEEEEeecCC
Q psy13856 34 IGHTLISCDTQAHIGIRST--------------ISLLQGSVYLRRESNKAGALSPK--LNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~--------------~~~~~~h~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
|+.+|++|+.|+.|++||+ +..+..|... |.+++|+|+ +++|++++.|+.|++||+.
T Consensus 70 d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~--- 142 (351)
T 3f3f_A 70 YGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGS----LYSVKFAPAHLGLKLACLGNDGILRLYDAL--- 142 (351)
T ss_dssp GCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSC----EEEEEECCGGGCSEEEEEETTCEEEEEECS---
T ss_pred CCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCc----eeEEEEcCCCCCcEEEEecCCCcEEEecCC---
Confidence 6999999999999999998 3456788888 999999999 9999999999999999984
Q ss_pred CCceeeccc------------------eeeEEEeec---cceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEE
Q psy13856 98 SPACLQPKY------------------FKLTVYSTK---LTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAW 149 (271)
Q Consensus 98 ~~~~~~~~~------------------~~~~~~~~~---~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~ 149 (271)
++....... .....+.+. +..++ +.+.+ ...+.......+.+|...|.+++|
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~ 222 (351)
T 3f3f_A 143 EPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISW 222 (351)
T ss_dssp STTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEE
T ss_pred ChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEE
Confidence 433332211 122233332 45555 55544 344444567888899999999999
Q ss_pred ccCCCCCC----cEEEEEeCCCeEEEEEcCCCc--------------------------------------------eee
Q psy13856 150 APSWGLSK----CMIASCSQDRKVIIWTSNDYV--------------------------------------------TWT 181 (271)
Q Consensus 150 ~p~~~~~~----~~l~s~~~dg~i~iwd~~~~~--------------------------------------------~~~ 181 (271)
+| ++ .+|++|+.||.|++||++... ...
T Consensus 223 ~p----~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (351)
T 3f3f_A 223 AP----SIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVEL 298 (351)
T ss_dssp CC----CSSCSSEEEEEEETTSCEEEEEEEECC---------------------------------------CCSEEEEE
T ss_pred CC----CCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeeeecccccccE
Confidence 99 45 899999999999999998641 012
Q ss_pred eeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 182 PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 182 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
...+.+|...|++++|+|++.+|++++.||.|++|++++++.+.++..+..+
T Consensus 299 ~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~~ 350 (351)
T 3f3f_A 299 LSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 350 (351)
T ss_dssp EEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEEEEEC--
T ss_pred EEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhheeehccc
Confidence 4567789999999999999999999999999999999999999999988764
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.4e-26 Score=188.65 Aligned_cols=194 Identities=10% Similarity=0.040 Sum_probs=155.5
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc---------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCC
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST---------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~---------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
......|++.+|++|+.|+.|++|++ ...+.+|.+. |.+++|++++. +++++.|++|++||. .
T Consensus 101 ~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~-l~s~s~d~~i~~wd~---~ 172 (340)
T 1got_B 101 MTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGY----LSCCRFLDDNQ-IVTSSGDTTCALWDI---E 172 (340)
T ss_dssp EEEEECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSC----EEEEEEEETTE-EEEEETTSCEEEEET---T
T ss_pred EEEEECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCcc----EEEEEECCCCc-EEEEECCCcEEEEEC---C
Confidence 44445679999999999999999997 3457789998 99999998864 889999999999998 6
Q ss_pred CCceeecc-ce----eeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCC
Q psy13856 98 SPACLQPK-YF----KLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDR 167 (271)
Q Consensus 98 ~~~~~~~~-~~----~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg 167 (271)
++.+.... .+ ....+++++..++ +.|++++.........+.+|...|.+++|+| ++.+|++|+.|+
T Consensus 173 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p----~~~~l~s~s~d~ 248 (340)
T 1got_B 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFP----NGNAFATGSDDA 248 (340)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECT----TSSEEEEEETTS
T ss_pred CCcEEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcC----CCCEEEEEcCCC
Confidence 66666544 22 3444556677776 7888833222267888999999999999999 699999999999
Q ss_pred eEEEEEcCCCceeeeeee--ccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhh
Q psy13856 168 KVIIWTSNDYVTWTPFIM--NTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQR 237 (271)
Q Consensus 168 ~i~iwd~~~~~~~~~~~~--~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 237 (271)
.|++||++.... ...+ ..+...|.+++|+|+|.+|++|+.|+.|++||+... +.+..+.+|....
T Consensus 249 ~v~iwd~~~~~~--~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~---~~~~~~~~h~~~v 315 (340)
T 1got_B 249 TCRLFDLRADQE--LMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRV 315 (340)
T ss_dssp CEEEEETTTTEE--EEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECCSSCE
T ss_pred cEEEEECCCCcE--EEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccC---cEeeEeecCCCcE
Confidence 999999998765 3333 234458999999999999999999999999999876 5667777776543
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.95 E-value=7.6e-26 Score=184.71 Aligned_cols=196 Identities=20% Similarity=0.172 Sum_probs=159.4
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
.+......|++++|++|+.|+.|++|+. ...+.+|... |.+++|+|++++|++++.|+.|++||. .++
T Consensus 25 ~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~~~d~~i~vwd~---~~~ 97 (312)
T 4ery_A 25 AVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG----ISDVAWSSDSNLLVSASDDKTLKIWDV---SSG 97 (312)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC----EEEEEECTTSSEEEEEETTSEEEEEET---TTC
T ss_pred cEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCc----eEEEEEcCCCCEEEEECCCCEEEEEEC---CCC
Confidence 3444455679999999999999999998 6678899999 999999999999999999999999998 666
Q ss_pred ceeecc-ce----eeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeE
Q psy13856 100 ACLQPK-YF----KLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 169 (271)
Q Consensus 100 ~~~~~~-~~----~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i 169 (271)
+++... .+ ....+..+++.++ +.+++.+....+....+..|...|.+++|+| ++.+|++|+.|+.|
T Consensus 98 ~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~d~~i 173 (312)
T 4ery_A 98 KCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR----DGSLIVSSSYDGLC 173 (312)
T ss_dssp CEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCE
T ss_pred cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC----CCCEEEEEeCCCcE
Confidence 665544 22 3344566677777 7788833222267788899999999999999 69999999999999
Q ss_pred EEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccch
Q psy13856 170 IIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSE 235 (271)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 235 (271)
++||++++... ......+...+..++|+|++.+|++++.|+.|++||++.+ +++..+.++..
T Consensus 174 ~~wd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~ 235 (312)
T 4ery_A 174 RIWDTASGQCL-KTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKN 235 (312)
T ss_dssp EEEETTTCCEE-EEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECSSCC
T ss_pred EEEECCCCcee-eEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEecCC
Confidence 99999987752 2234456778999999999999999999999999999876 66666666543
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.3e-26 Score=186.81 Aligned_cols=190 Identities=15% Similarity=0.160 Sum_probs=144.6
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcC--CCCeEEEEeCCCcEEEEEeec
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSP--KLNRSATSSFHEAAKHLGTVQ 95 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~~~d~~~ 95 (271)
.+......++|++||+|+.|++|++||+ +..+.+|.+. |++++|++ ++++|++|+.|++|++||.
T Consensus 11 ~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~----V~~v~~s~~~~g~~l~s~s~D~~v~iWd~-- 84 (297)
T 2pm7_B 11 MIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGP----VWRVDWAHPKFGTILASCSYDGKVMIWKE-- 84 (297)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSC----EEEEEECCGGGCSEEEEEETTTEEEEEEB--
T ss_pred ceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCC----eEEEEecCCCcCCEEEEEcCCCEEEEEEc--
Confidence 3444445579999999999999999997 5678899999 99999986 4889999999999999998
Q ss_pred CCCCc--eeecc-----ceeeEEEeec--cceee-----eEEEE-e-eCCceEEeEEecCCCcceEEEEEccCCC-----
Q psy13856 96 SSSPA--CLQPK-----YFKLTVYSTK--LTRIL-----ILVRI-C-GGDKWIEETKLENHSDWVRDVAWAPSWG----- 154 (271)
Q Consensus 96 ~~~~~--~~~~~-----~~~~~~~~~~--~~~l~-----~~v~i-~-~~~~~~~~~~~~~h~~~v~~v~~~p~~~----- 154 (271)
.++. .+... ......+.++ +..++ +.|++ . ..........+.+|...|.+++|+|...
T Consensus 85 -~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~ 163 (297)
T 2pm7_B 85 -ENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGE 163 (297)
T ss_dssp -SSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------
T ss_pred -CCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccccc
Confidence 4332 11111 2234455554 55666 78888 2 2221122456788999999999999410
Q ss_pred ----CCCcEEEEEeCCCeEEEEEcCCCce-e-eeeeeccCCCCeEEEEEecCC---CEEEEEECCCcEEEEEeCCC
Q psy13856 155 ----LSKCMIASCSQDRKVIIWTSNDYVT-W-TPFIMNTFDDVVWNVSWSLTG---DILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 155 ----~~~~~l~s~~~dg~i~iwd~~~~~~-~-~~~~~~~h~~~v~~v~~~~~g---~~l~s~s~D~~v~iw~~~~~ 221 (271)
.++.+|++|+.|+.|++||++.+.. + ....+.+|...|++++|+|++ .+|++++.|++|+||+++..
T Consensus 164 ~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~ 239 (297)
T 2pm7_B 164 HNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE 239 (297)
T ss_dssp ------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred CCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence 0146999999999999999987652 1 245678999999999999984 89999999999999999764
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=187.03 Aligned_cols=191 Identities=13% Similarity=0.100 Sum_probs=153.3
Q ss_pred cceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCC
Q psy13856 23 EIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 23 ~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
.-.++.....|++.+|+||+.|++|++||. ...+..|... |.+++|+|++..+++|+.|+.+++|+.....
T Consensus 64 ~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~----v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~ 139 (354)
T 2pbi_B 64 GNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTW----VMACAYAPSGCAIACGGLDNKCSVYPLTFDK 139 (354)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSC----CCEEEECTTSSEEEEESTTSEEEEEECCCCT
T ss_pred CCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCC----EEEEEECCCCCEEEEeeCCCCEEEEEEeccc
Confidence 334555566679999999999999999997 5667778888 9999999999999999999999999973211
Q ss_pred CCc---eeecc-----ceeeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe
Q psy13856 98 SPA---CLQPK-----YFKLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 164 (271)
Q Consensus 98 ~~~---~~~~~-----~~~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~ 164 (271)
... ..... ......+..++..++ +.|++++-...+.+..+.+|...|.+++|+|.. ++.+|++|+
T Consensus 140 ~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~--~g~~l~sgs 217 (354)
T 2pbi_B 140 NENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSE--TGNTFVSGG 217 (354)
T ss_dssp TCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCS--SCCEEEEEE
T ss_pred cccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCC--CCCEEEEEe
Confidence 111 11111 123445566666666 889993322226788899999999999998841 368999999
Q ss_pred CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 165 QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.||.|++||++++.+ ...+.+|...|++++|+|++.+|++++.|++|++||++.+
T Consensus 218 ~Dg~v~~wd~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~ 272 (354)
T 2pbi_B 218 CDKKAMVWDMRSGQC--VQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD 272 (354)
T ss_dssp TTSCEEEEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT
T ss_pred CCCeEEEEECCCCcE--EEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC
Confidence 999999999999886 6778899999999999999999999999999999999866
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-26 Score=185.21 Aligned_cols=180 Identities=14% Similarity=0.209 Sum_probs=133.6
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
......++|.+|++|+.|++|++||+ +..+.+|... |.+++|+|++++|++|+.|++|++||. +. .+
T Consensus 69 ~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~s~D~~i~vwd~---~~-~~ 140 (319)
T 3frx_A 69 QDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSD----VMSVDIDKKASMIISGSRDKTIKVWTI---KG-QC 140 (319)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEECTTSCEEEEEETTSCEEEEET---TS-CE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCc----EEEEEEcCCCCEEEEEeCCCeEEEEEC---CC-Ce
Confidence 33445679999999999999999998 6778899999 999999999999999999999999997 33 33
Q ss_pred eecc-ce----eeEEEeec------cceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC
Q psy13856 102 LQPK-YF----KLTVYSTK------LTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ 165 (271)
Q Consensus 102 ~~~~-~~----~~~~~~~~------~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~ 165 (271)
+... .+ ....+.+. +..++ +.|++++....+....+.+|...|.+++|+| ++.+|++|+.
T Consensus 141 ~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp----~g~~l~s~~~ 216 (319)
T 3frx_A 141 LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASP----DGTLIASAGK 216 (319)
T ss_dssp EEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECT----TSSEEEEEET
T ss_pred EEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcC----CCCEEEEEeC
Confidence 3222 22 12222221 22444 7788843333367788899999999999999 6999999999
Q ss_pred CCeEEEEEcCCCceeeeeeec------------------------------------------------cCCCCeEEEEE
Q psy13856 166 DRKVIIWTSNDYVTWTPFIMN------------------------------------------------TFDDVVWNVSW 197 (271)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~------------------------------------------------~h~~~v~~v~~ 197 (271)
||.|++||+++.+. ...+. .|...+.+++|
T Consensus 217 dg~i~iwd~~~~~~--~~~~~~~~~v~~~~~sp~~~~la~~~~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 294 (319)
T 3frx_A 217 DGEIMLWNLAAKKA--MYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294 (319)
T ss_dssp TCEEEEEETTTTEE--EEEEECCSCEEEEEECSSSSEEEEEETTEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEE
T ss_pred CCeEEEEECCCCcE--EEEecCCCcEEEEEEcCCCCEEEEEcCCCcEEEEeCcCeeeeccCccccccccCcCcceeEEEE
Confidence 99999999987543 11111 12345667777
Q ss_pred ecCCCEEEEEECCCcEEEEEeCC
Q psy13856 198 SLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 198 ~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
+|+|++|++|+.|+.|++|++.+
T Consensus 295 spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 295 SADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp CTTSSEEEEEETTSCEEEEEEEE
T ss_pred CCCCCEEEEeecCceEEEEEEee
Confidence 77777777777777777777654
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-25 Score=185.38 Aligned_cols=196 Identities=18% Similarity=0.211 Sum_probs=146.4
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc------------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEe
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGT 93 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~ 93 (271)
+......|++.+|++|+.|++|++||. +..+.+|... |.+++|+|++++|++|+.|++|++||.
T Consensus 61 v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~----V~~v~~sp~g~~las~s~D~~v~iwd~ 136 (330)
T 2hes_X 61 IRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENE----VKGVAWSNDGYYLATCSRDKSVWIWET 136 (330)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----C----EEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred EEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCc----EEEEEECCCCCEEEEEeCCCEEEEEec
Confidence 444555679999999999999999986 3457889999 999999999999999999999999998
Q ss_pred ecC-CCCceeecc-c----eeeEEEeeccceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEE
Q psy13856 94 VQS-SSPACLQPK-Y----FKLTVYSTKLTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMI 160 (271)
Q Consensus 94 ~~~-~~~~~~~~~-~----~~~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l 160 (271)
... ...+++... . .....+++++..++ +.|++ ...+.+.++..+.+|...|.+++|+|.. ++.+|
T Consensus 137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l 214 (330)
T 2hes_X 137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTE--GVFRL 214 (330)
T ss_dssp CTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSS--SSCEE
T ss_pred cCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCC--CeeEE
Confidence 321 122333332 2 24455667777777 78888 3344456788999999999999999931 16789
Q ss_pred EEEeCCCeEEEEEcCCCc-----e-eeeeeecc-CCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEE
Q psy13856 161 ASCSQDRKVIIWTSNDYV-----T-WTPFIMNT-FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITE 229 (271)
Q Consensus 161 ~s~~~dg~i~iwd~~~~~-----~-~~~~~~~~-h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 229 (271)
++|+.|++|++||++... . .....+.. |...|++++|++++ +|++++.|+.|++|+...+ .|+....
T Consensus 215 ~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~-~~~~~~~ 288 (330)
T 2hes_X 215 CSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDG-EWKVFAK 288 (330)
T ss_dssp EEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETT-EEEEEEE
T ss_pred EEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC-ceEEEec
Confidence 999999999999987541 0 11233444 89999999999765 8999999999999998743 4544443
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-27 Score=199.72 Aligned_cols=183 Identities=15% Similarity=0.037 Sum_probs=144.4
Q ss_pred cccCCCC-CCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCC
Q psy13856 27 YTESPLR-IGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 27 ~~~~~~~-~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
.+....| ++.+||+|+.||.|+|||+ ...+.+|.+. |++++|+| ++++|++|+.|++|++||+ +
T Consensus 123 ~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~----V~~l~f~p~~~~~l~s~s~D~~v~iwd~---~ 195 (435)
T 4e54_B 123 TSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGS----ITGLKFNPLNTNQFYASSMEGTTRLQDF---K 195 (435)
T ss_dssp EEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCC----CCEEEECSSCTTEEEEECSSSCEEEEET---T
T ss_pred EEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCC----EEEEEEeCCCCCEEEEEeCCCEEEEeec---c
Confidence 3334444 5679999999999999998 3445689999 99999998 7889999999999999998 4
Q ss_pred CCceeecc-------ceeeEEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe
Q psy13856 98 SPACLQPK-------YFKLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 164 (271)
Q Consensus 98 ~~~~~~~~-------~~~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~ 164 (271)
........ ......++.++..++ +.|++ ...+ +.+..+.+|...|.+++|+|. ...+|++|+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~--~~~~~~~~h~~~v~~v~~~p~---~~~~~~s~s 270 (435)
T 4e54_B 196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDG--KELWNLRMHKKKVTHVALNPC---CDWFLATAS 270 (435)
T ss_dssp SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSS--CBCCCSBCCSSCEEEEEECTT---CSSEEEEEE
T ss_pred CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCc--ceeEEEecccceEEeeeecCC---CceEEEEec
Confidence 43332211 112344566677777 77888 4444 566778899999999999995 456899999
Q ss_pred CCCeEEEEEcCCCceee-eeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 165 QDRKVIIWTSNDYVTWT-PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 165 ~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.|+.|++||+++..... .....+|...|++++|+|+|.+|++++.|+.|+|||+.+.
T Consensus 271 ~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~ 328 (435)
T 4e54_B 271 VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW 328 (435)
T ss_dssp TTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS
T ss_pred CcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC
Confidence 99999999998765321 2234679999999999999999999999999999999865
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-25 Score=185.65 Aligned_cols=216 Identities=13% Similarity=0.048 Sum_probs=164.2
Q ss_pred ceeEEee-ceeEeecccc--cc--------ceecccCCCCCCCEEEEccCCCeEEeccc-----------eeeecccccc
Q psy13856 5 EWLLVSC-DGLLMTLKPT--LE--------IETYTESPLRIGHTLISCDTQAHIGIRST-----------ISLLQGSVYL 62 (271)
Q Consensus 5 ~~~~~~~-~~~~~~~~~~--~~--------~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----------~~~~~~h~~~ 62 (271)
.+++..+ ||.+..+... .. ..+......|+|..+++|+.|+.+++|++ ...+.+|...
T Consensus 77 ~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~ 156 (354)
T 2pbi_B 77 RRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNY 156 (354)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSC
T ss_pred CEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCc
Confidence 3444433 7777766421 11 11233445679999999999999999986 3456789888
Q ss_pred ccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-cee----eEEEee--ccceee-----eEEEEeeCCc
Q psy13856 63 RRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-YFK----LTVYST--KLTRIL-----ILVRICGGDK 130 (271)
Q Consensus 63 ~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~~~----~~~~~~--~~~~l~-----~~v~i~~~~~ 130 (271)
|.+++|+|++..|++++.|++|++||+ .+++++... .+. ...+.. ++..++ +.+++++...
T Consensus 157 ----v~~~~~~~~~~~l~t~s~D~~v~lwd~---~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~ 229 (354)
T 2pbi_B 157 ----LSACSFTNSDMQILTASGDGTCALWDV---ESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRS 229 (354)
T ss_dssp ----EEEEEECSSSSEEEEEETTSEEEEEET---TTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTT
T ss_pred ----EEEEEEeCCCCEEEEEeCCCcEEEEeC---CCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCC
Confidence 999999999999999999999999999 677766554 222 222333 245666 7888833222
Q ss_pred eEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeec--cCCCCeEEEEEecCCCEEEEEE
Q psy13856 131 WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMN--TFDDVVWNVSWSLTGDILTVSC 208 (271)
Q Consensus 131 ~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~v~~~~~g~~l~s~s 208 (271)
-+++..+.+|...|.+++|+| ++.+|++|+.|++|++||++.... ...+. .+...+.+++|+|+|.+|++++
T Consensus 230 ~~~~~~~~~h~~~v~~v~~~p----~~~~l~s~s~D~~v~lwd~~~~~~--~~~~~~~~~~~~~~~~~~s~~g~~l~~g~ 303 (354)
T 2pbi_B 230 GQCVQAFETHESDVNSVRYYP----SGDAFASGSDDATCRLYDLRADRE--VAIYSKESIIFGASSVDFSLSGRLLFAGY 303 (354)
T ss_dssp CCEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTTTEE--EEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CcEEEEecCCCCCeEEEEEeC----CCCEEEEEeCCCeEEEEECCCCcE--EEEEcCCCcccceeEEEEeCCCCEEEEEE
Confidence 267888999999999999999 699999999999999999998765 33333 3345789999999999999999
Q ss_pred CCCcEEEEEeCCCCceeEEEEecccchh
Q psy13856 209 GDNSVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 209 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
.|++|++||+..+ ..+..+.+|...
T Consensus 304 ~d~~i~vwd~~~~---~~~~~l~~h~~~ 328 (354)
T 2pbi_B 304 NDYTINVWDVLKG---SRVSILFGHENR 328 (354)
T ss_dssp TTSCEEEEETTTC---SEEEEECCCSSC
T ss_pred CCCcEEEEECCCC---ceEEEEECCCCc
Confidence 9999999999876 566677776654
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-25 Score=199.62 Aligned_cols=188 Identities=16% Similarity=0.209 Sum_probs=150.0
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCCeEEEEeCC----CcEEEEEee
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH----EAAKHLGTV 94 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d----~~i~~~d~~ 94 (271)
+......|||++||+|+.|++|+|||+ ...+.+|.+. |.+++|+|+++.|++++.+ +.|++||.
T Consensus 62 v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~----v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~- 136 (611)
T 1nr0_A 62 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP----VKDISWDSESKRIAAVGEGRERFGHVFLFDT- 136 (611)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSC----EEEEEECTTSCEEEEEECCSSCSEEEEETTT-
T ss_pred eEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCc----eEEEEECCCCCEEEEEECCCCceeEEEEeeC-
Confidence 344555689999999999999999997 3467789998 9999999999999998875 47888875
Q ss_pred cCCCCceeecc-----ceeeEEEeeccc-eee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEE
Q psy13856 95 QSSSPACLQPK-----YFKLTVYSTKLT-RIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASC 163 (271)
Q Consensus 95 ~~~~~~~~~~~-----~~~~~~~~~~~~-~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~ 163 (271)
+.+.... ......+++++. .++ +.+++++....+....+.+|...|.+++|+| ++.+|++|
T Consensus 137 ----~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fsp----dg~~las~ 208 (611)
T 1nr0_A 137 ----GTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP----DGSLFAST 208 (611)
T ss_dssp ----CCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT----TSSEEEEE
T ss_pred ----CCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECC----CCCEEEEE
Confidence 2222222 224455666654 355 7888844333477888999999999999999 79999999
Q ss_pred eCCCeEEEEEcCCCceeeeeeec-------cCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEec
Q psy13856 164 SQDRKVIIWTSNDYVTWTPFIMN-------TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 164 ~~dg~i~iwd~~~~~~~~~~~~~-------~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
+.|++|++||..+++. ...+. +|.+.|++++|+|+|.+|++++.|++|++||++++ +++.++.
T Consensus 209 s~D~~i~lwd~~~g~~--~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~---~~~~~~~ 278 (611)
T 1nr0_A 209 GGDGTIVLYNGVDGTK--TGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL---KVEKTIP 278 (611)
T ss_dssp ETTSCEEEEETTTCCE--EEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEE
T ss_pred ECCCcEEEEECCCCcE--eeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCC---ceeeeec
Confidence 9999999999988775 44442 79999999999999999999999999999999876 5555554
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.9e-26 Score=198.90 Aligned_cols=172 Identities=23% Similarity=0.292 Sum_probs=147.7
Q ss_pred cCCCCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 29 ESPLRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 29 ~~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
....|||++|++++.|+.|++||. +..+.+|... |.+++|+|++++|++++.|+.+++|+. . ++.+..
T Consensus 391 ~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~----v~~~~~s~d~~~l~~~~~d~~v~~w~~---~-~~~~~~ 462 (577)
T 2ymu_A 391 VAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS----VWGVAFSPDDQTIASASDDKTVKLWNR---N-GQLLQT 462 (577)
T ss_dssp EEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSC----EEEEEECTTSSEEEEEETTSEEEEEET---T-SCEEEE
T ss_pred EEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCC----eEEEEECCCCCEEEEEcCCCEEEEEEC---C-CCEEEE
Confidence 334579999999999999999998 6778899999 999999999999999999999999995 2 334333
Q ss_pred c-c----eeeEEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEE
Q psy13856 105 K-Y----FKLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT 173 (271)
Q Consensus 105 ~-~----~~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd 173 (271)
. . .....+++++++++ +.|++ ..++ +.++.+.+|...|++++|+| ++.+|++++.|+.|++||
T Consensus 463 ~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~--~~~~~~~~h~~~v~~l~~s~----dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 463 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSP----DGQTIASASDDKTVKLWN 536 (577)
T ss_dssp EECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECT----TSSCEEEEETTSEEEEEC
T ss_pred EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC--CEEEEEeCCCCCEEEEEEcC----CCCEEEEEECcCEEEEEe
Confidence 2 2 24456677788887 78888 5555 67889999999999999999 799999999999999999
Q ss_pred cCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q psy13856 174 SNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 174 ~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~ 217 (271)
. +++. ...+.+|.+.|++++|+|||++|++++.|++|++||
T Consensus 537 ~-~~~~--~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 537 R-NGQL--LQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp T-TSCE--EEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred C-CCCE--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 6 4454 677889999999999999999999999999999997
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-25 Score=182.36 Aligned_cols=196 Identities=15% Similarity=0.156 Sum_probs=152.4
Q ss_pred cceecccCCCCC-CCEEEEccCCCeEEeccc----------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEE
Q psy13856 23 EIETYTESPLRI-GHTLISCDTQAHIGIRST----------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHL 91 (271)
Q Consensus 23 ~~~~~~~~~~~~-g~~l~s~s~d~~i~lwd~----------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~ 91 (271)
.-.+......|+ +++|+|||.|++|++||+ ...+.+|... |.+++|+|++++|++++.|+.+++|
T Consensus 38 ~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~----V~~~~~s~dg~~l~s~~~d~~i~~~ 113 (340)
T 4aow_A 38 NGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHF----VSDVVISSDGQFALSGSWDGTLRLW 113 (340)
T ss_dssp SSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSC----EEEEEECTTSSEEEEEETTSEEEEE
T ss_pred cCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCC----EEEEEECCCCCEEEEEcccccceEE
Confidence 334455555566 689999999999999997 4567899999 9999999999999999999999999
Q ss_pred EeecCCCCceeecc-----ceeeEEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEE
Q psy13856 92 GTVQSSSPACLQPK-----YFKLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMI 160 (271)
Q Consensus 92 d~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l 160 (271)
+. ......... ......+...+..++ +.+++ .............+|...+..++|++.. ...++
T Consensus 114 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~ 188 (340)
T 4aow_A 114 DL---TTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNS--SNPII 188 (340)
T ss_dssp ET---TTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCS--SSCEE
T ss_pred ee---cccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCC--CCcEE
Confidence 98 444443332 113333444456665 66777 3233224455667899999999999842 35688
Q ss_pred EEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 161 ASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 161 ~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
++++.|+.|++||.++.+. ...+.+|.+.|++++|+|++.+|++++.|+.|++||++.. +++..+..
T Consensus 189 ~s~~~d~~i~i~d~~~~~~--~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~ 255 (340)
T 4aow_A 189 VSCGWDKLVKVWNLANCKL--KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG 255 (340)
T ss_dssp EEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC
T ss_pred EEEcCCCEEEEEECCCCce--eeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---ceeeeecC
Confidence 9999999999999999876 6778899999999999999999999999999999999876 45555544
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=199.44 Aligned_cols=189 Identities=15% Similarity=0.173 Sum_probs=152.2
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
........|||++|++++. +.|++|++ ...+.+|... |++++|+|+|++|++|+.|++|++||...+ ..
T Consensus 20 ~~~~~~~spdg~~l~~~~~-~~v~l~~~~~~~~~~~~~~h~~~----v~~~~~spdg~~lasg~~d~~v~lWd~~~~-~~ 93 (611)
T 1nr0_A 20 TAVVLGNTPAGDKIQYCNG-TSVYTVPVGSLTDTEIYTEHSHQ----TTVAKTSPSGYYCASGDVHGNVRIWDTTQT-TH 93 (611)
T ss_dssp CCCCCEECTTSSEEEEEET-TEEEEEETTCSSCCEEECCCSSC----EEEEEECTTSSEEEEEETTSEEEEEESSST-TC
T ss_pred ceeEEeeCCCCCEEEeCCC-CEEEEecCCCcccCeEecCCCCc----eEEEEECCCCcEEEEEeCCCCEEEeECCCC-cc
Confidence 3455555689999999985 79999998 6778999999 999999999999999999999999998321 11
Q ss_pred ceeecc-----ceeeEEEeeccceee---------eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCc-EEEEEe
Q psy13856 100 ACLQPK-----YFKLTVYSTKLTRIL---------ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC-MIASCS 164 (271)
Q Consensus 100 ~~~~~~-----~~~~~~~~~~~~~l~---------~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~-~l~s~~ 164 (271)
...... ......|+++++.++ +.+++.+.+ .....+.+|...|.+++|+| ++. .|++|+
T Consensus 94 ~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~--~~~~~l~gh~~~v~~v~f~p----~~~~~l~s~s 167 (611)
T 1nr0_A 94 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG--TSNGNLTGQARAMNSVDFKP----SRPFRIISGS 167 (611)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC--CBCBCCCCCSSCEEEEEECS----SSSCEEEEEE
T ss_pred eeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC--CCcceecCCCCCceEEEECC----CCCeEEEEEe
Confidence 122111 234566777788877 256664455 45667889999999999999 454 699999
Q ss_pred CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEe
Q psy13856 165 QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230 (271)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~ 230 (271)
.|++|++||..+.+. ...+.+|...|++++|+|+|.+|++++.|++|++||+.++ +++..+
T Consensus 168 ~D~~v~lwd~~~~~~--~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g---~~~~~~ 228 (611)
T 1nr0_A 168 DDNTVAIFEGPPFKF--KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG---TKTGVF 228 (611)
T ss_dssp TTSCEEEEETTTBEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEEC
T ss_pred CCCeEEEEECCCCeE--eeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC---cEeeee
Confidence 999999999887665 6778899999999999999999999999999999998776 444444
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.8e-25 Score=182.32 Aligned_cols=186 Identities=23% Similarity=0.239 Sum_probs=144.4
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc-------eeee-cc-ccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeec
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST-------ISLL-QG-SVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQ 95 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~-~~-h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~ 95 (271)
.++...+.++ +|++|+.|++|++||+ ...+ .+ |... |.+++|+|++++|++|+.|++|++|+...
T Consensus 16 ~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~----v~~v~~sp~~~~las~s~D~~v~iw~~~~ 89 (330)
T 2hes_X 16 KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKA----IRSVAWRPHTSLLAAGSFDSTVSIWAKEE 89 (330)
T ss_dssp CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSC----EEEEEECTTSSEEEEEETTSCEEEEEC--
T ss_pred ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCC----EEEEEECCCCCEEEEEeCCCcEEEEEccc
Confidence 3344444444 9999999999999998 2333 34 8888 99999999999999999999999999732
Q ss_pred CC----CCceeecc-c----eeeEEEeeccceee-----eEEEE-ee--C-CceEEeEEecCCCcceEEEEEccCCCCCC
Q psy13856 96 SS----SPACLQPK-Y----FKLTVYSTKLTRIL-----ILVRI-CG--G-DKWIEETKLENHSDWVRDVAWAPSWGLSK 157 (271)
Q Consensus 96 ~~----~~~~~~~~-~----~~~~~~~~~~~~l~-----~~v~i-~~--~-~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 157 (271)
.. ...+.... . .....+++++++++ +.|++ .. . ..++++..+.+|...|.+++|+| ++
T Consensus 90 ~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p----~~ 165 (330)
T 2hes_X 90 SADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP----SE 165 (330)
T ss_dssp -----CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS----SS
T ss_pred CcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC----CC
Confidence 11 12222222 2 23455667788887 78888 22 1 23467788899999999999999 69
Q ss_pred cEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecC--CCEEEEEECCCcEEEEEeCC
Q psy13856 158 CMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLT--GDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 158 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~--g~~l~s~s~D~~v~iw~~~~ 220 (271)
.+|++|+.|++|++||...+.......+.+|...|++++|+|+ +.+|++++.|++|++|+++.
T Consensus 166 ~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~ 230 (330)
T 2hes_X 166 ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMG 230 (330)
T ss_dssp SEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEE
T ss_pred CEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecC
Confidence 9999999999999999877632226778899999999999998 77899999999999999864
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.2e-26 Score=190.54 Aligned_cols=199 Identities=11% Similarity=0.065 Sum_probs=151.0
Q ss_pred ccceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecC
Q psy13856 22 LEIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQS 96 (271)
Q Consensus 22 ~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~ 96 (271)
+.-.++.....|++.+|++|+.|++|++||. ...+..|... |.+++|+|++++|++|+.|+.+++|++...
T Consensus 65 H~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~----v~~~~~s~~g~~las~~~d~~v~iw~~~~~ 140 (380)
T 3iz6_a 65 HSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPW----VMECAFAPNGQSVACGGLDSACSIFNLSSQ 140 (380)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTT----CCCCEECTTSSEEEECCSSSCCEEEECCCC
T ss_pred cccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCC----EEEEEECCCCCEEEEeeCCCcEEEEECCCC
Confidence 3445566666679999999999999999998 6778899999 999999999999999999999999998321
Q ss_pred CC----Cceeecc-ce----eeEEEeec-cceee-----eEEEEeeCCceEEeEEe-----cCCCcceEEEEEccCCCCC
Q psy13856 97 SS----PACLQPK-YF----KLTVYSTK-LTRIL-----ILVRICGGDKWIEETKL-----ENHSDWVRDVAWAPSWGLS 156 (271)
Q Consensus 97 ~~----~~~~~~~-~~----~~~~~~~~-~~~l~-----~~v~i~~~~~~~~~~~~-----~~h~~~v~~v~~~p~~~~~ 156 (271)
.. ....... .+ ....+... ...++ +.|++++...-..+..+ .+|...|.+++|+|. +
T Consensus 141 ~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---~ 217 (380)
T 3iz6_a 141 ADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSL---N 217 (380)
T ss_dssp SSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSS---S
T ss_pred ccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecC---C
Confidence 10 0111111 11 12222332 33344 77888322211445555 679999999999875 6
Q ss_pred CcEEEEEeCCCeEEEEEcCCC-ceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 157 KCMIASCSQDRKVIIWTSNDY-VTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
+.+|++|+.|+.|++||++.. .. ...+.+|.+.|++++|+|++.+|++++.|++|++||++++ .++..+..
T Consensus 218 ~~~l~sgs~D~~v~~wd~~~~~~~--~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~ 289 (380)
T 3iz6_a 218 ANMFISGSCDTTVRLWDLRITSRA--VRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNR 289 (380)
T ss_dssp CCEEEEEETTSCEEEEETTTTCCC--CEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECC
T ss_pred CCEEEEEECCCeEEEEECCCCCcc--eEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecc
Confidence 899999999999999999854 33 6778899999999999999999999999999999999877 45544443
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-25 Score=181.33 Aligned_cols=176 Identities=19% Similarity=0.211 Sum_probs=141.0
Q ss_pred CCCCEEEEccCCCeEEeccc------------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 33 RIGHTLISCDTQAHIGIRST------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
+++.+|++|+.|++|++||+ ...+.+|... |.+++|+|++.++++|+.|++|++||+ ++++
T Consensus 37 ~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~----V~~~~~~~~~~~l~s~s~D~~v~lwd~---~~~~ 109 (343)
T 2xzm_R 37 EDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHF----VSDLALSQENCFAISSSWDKTLRLWDL---RTGT 109 (343)
T ss_dssp CCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSC----EEEEEECSSTTEEEEEETTSEEEEEET---TSSC
T ss_pred CCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCc----eEEEEECCCCCEEEEEcCCCcEEEEEC---CCCc
Confidence 38999999999999999997 3457899999 999999999999999999999999999 6666
Q ss_pred eeecc-ce----eeEEEeeccceee-----eEEEE-eeCCceEEeEEe---cCCCcceEEEEEccCC------CCCCcEE
Q psy13856 101 CLQPK-YF----KLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKL---ENHSDWVRDVAWAPSW------GLSKCMI 160 (271)
Q Consensus 101 ~~~~~-~~----~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~---~~h~~~v~~v~~~p~~------~~~~~~l 160 (271)
++... .+ ....++++++.++ +.|++ ...+ ...... .+|...|.+++|+|.. .+.+.+|
T Consensus 110 ~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l 187 (343)
T 2xzm_R 110 TYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG--ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYF 187 (343)
T ss_dssp EEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS--CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEE
T ss_pred EEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC--CceeeeecccCCCceeeeeeeccccccccccCCCCCEE
Confidence 66544 22 4455666777777 77888 3223 222222 3788999999999941 0012799
Q ss_pred EEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 161 ASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 161 ~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
++++.|+.|++||.. ... ...+.+|...|.+++|+|+|.+|++++.|+.|++||+..
T Consensus 188 ~s~~~d~~i~iwd~~-~~~--~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 188 ASVGWDGRLKVWNTN-FQI--RYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp EEEETTSEEEEEETT-TEE--EEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred EEEcCCCEEEEEcCC-Cce--eEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 999999999999954 333 567789999999999999999999999999999999943
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-25 Score=184.89 Aligned_cols=192 Identities=8% Similarity=0.031 Sum_probs=143.7
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc---------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCC
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST---------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~---------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
......|++. +++++.||+|++||+ .....+|... |.+++|+|++++|++|+.|++|++||. .
T Consensus 98 ~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~----V~~v~~spdg~~l~sgs~dg~v~iwd~---~ 169 (357)
T 4g56_B 98 TDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDI----VKTLSVFSDGTQAVSGGKDFSVKVWDL---S 169 (357)
T ss_dssp EEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSC----EEEEEECSSSSEEEEEETTSCEEEEET---T
T ss_pred EEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCC----EEEEEECCCCCEEEEEeCCCeEEEEEC---C
Confidence 3444456765 556778899999998 1234578888 999999999999999999999999998 6
Q ss_pred CCceeecc-ce----eeEEEeeccc-eee-----eEEEEe--eCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe
Q psy13856 98 SPACLQPK-YF----KLTVYSTKLT-RIL-----ILVRIC--GGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 164 (271)
Q Consensus 98 ~~~~~~~~-~~----~~~~~~~~~~-~l~-----~~v~i~--~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~ 164 (271)
+++++... .+ ....++.++. .++ +.|+++ ..+.......+..|...+.+++|+|. ++.+|++|+
T Consensus 170 ~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~---~~~~la~g~ 246 (357)
T 4g56_B 170 QKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPE---KDDTFACGD 246 (357)
T ss_dssp TTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTT---STTEEEEEE
T ss_pred CCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhc---ccceEEEee
Confidence 77766554 22 3334444443 444 778882 23321222234557788999999996 578999999
Q ss_pred CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCC-CEEEEEECCCcEEEEEeCCCCceeEEEEecccch
Q psy13856 165 QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTG-DILTVSCGDNSVSLWKENTDGAWQCITEMGKTSE 235 (271)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 235 (271)
.|+.|++||+++++. ...+.+|...|++++|+|++ .+|++++.|++|+|||++++ +.+..+ +|..
T Consensus 247 ~d~~i~~wd~~~~~~--~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---~~~~~~-~H~~ 312 (357)
T 4g56_B 247 ETGNVSLVNIKNPDS--AQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---EVFRDL-SHRD 312 (357)
T ss_dssp SSSCEEEEESSCGGG--CEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---EEEEEC-CCSS
T ss_pred cccceeEEECCCCcE--eEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---cEeEEC-CCCC
Confidence 999999999998876 77888999999999999987 68999999999999999876 444433 4543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=188.43 Aligned_cols=176 Identities=22% Similarity=0.253 Sum_probs=142.3
Q ss_pred ccceecccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcC--CCCeEEEEeCCCcEEEEE
Q psy13856 22 LEIETYTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSP--KLNRSATSSFHEAAKHLG 92 (271)
Q Consensus 22 ~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~~~d 92 (271)
++-.+......++|++|++|+.|++|++||+ +..+.+|.+. |++++|++ ++++|++|+.|++|++||
T Consensus 12 H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~----V~~v~~~~~~~~~~l~s~s~D~~v~iWd 87 (316)
T 3bg1_A 12 HEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGP----VWQVAWAHPMYGNILASCSYDRKVIIWR 87 (316)
T ss_dssp --CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSC----EEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred ccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCcc----EEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence 3444555555679999999999999999997 4567899999 99999986 489999999999999999
Q ss_pred eecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEE
Q psy13856 93 TVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172 (271)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iw 172 (271)
.. + +.+.....+.+|...|.+++|+|.. ++.+|++|+.|+.|++|
T Consensus 88 ~~---~------------------------------~~~~~~~~~~~h~~~V~~v~~~p~~--~g~~lasgs~D~~i~lw 132 (316)
T 3bg1_A 88 EE---N------------------------------GTWEKSHEHAGHDSSVNSVCWAPHD--YGLILACGSSDGAISLL 132 (316)
T ss_dssp CS---S------------------------------SCCCEEEEECCCSSCCCEEEECCTT--TCSCEEEECSSSCEEEE
T ss_pred CC---C------------------------------CcceEEEEccCCCCceEEEEECCCC--CCcEEEEEcCCCCEEEE
Confidence 82 2 2223455677899999999999931 27899999999999999
Q ss_pred EcCCCceee-eeeeccCCCCeEEEEEecC-----------------CCEEEEEECCCcEEEEEeCCCCceeEEEEecccc
Q psy13856 173 TSNDYVTWT-PFIMNTFDDVVWNVSWSLT-----------------GDILTVSCGDNSVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 173 d~~~~~~~~-~~~~~~h~~~v~~v~~~~~-----------------g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
|++....+. ...+.+|...|.+++|+|+ +.+|++|+.|++|++||++..+.|.+...+.+|.
T Consensus 133 d~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~ 212 (316)
T 3bg1_A 133 TYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS 212 (316)
T ss_dssp EECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCS
T ss_pred ecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCC
Confidence 998764321 3456789999999999997 4789999999999999998766777887887776
Q ss_pred hh
Q psy13856 235 EQ 236 (271)
Q Consensus 235 ~~ 236 (271)
..
T Consensus 213 ~~ 214 (316)
T 3bg1_A 213 DW 214 (316)
T ss_dssp SC
T ss_pred Cc
Confidence 43
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-24 Score=190.71 Aligned_cols=190 Identities=23% Similarity=0.260 Sum_probs=157.9
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCcee
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACL 102 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~ 102 (271)
......|+|.+|++|+.|+.|++||. +..+.+|... |.+++|+|++++|++++.|+.|++|+. +++.+
T Consensus 348 ~~~~~s~~g~~l~~~~~dg~v~~~~~~~~~~~~~~~~~~~----v~~~~~s~dg~~l~~~~~d~~v~~~~~----~~~~~ 419 (577)
T 2ymu_A 348 WGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSS----VRGVAFSPDGQTIASASDDKTVKLWNR----NGQLL 419 (577)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTCCEEEEEECCSSC----EEEEEECTTSSCEEEEETTSEEEEECT----TCCEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEcCCCCEEEEecCCCCC----eEEEEECCCCCEEEEEeCCCEEEEEeC----CCCEE
Confidence 34445689999999999999999998 6778899998 999999999999999999999999994 23444
Q ss_pred ecc-c----eeeEEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEE
Q psy13856 103 QPK-Y----FKLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII 171 (271)
Q Consensus 103 ~~~-~----~~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~i 171 (271)
... . .....+++++++++ +.+++ ..++ +.+..+.+|...|.+++|+| ++.+|++++.|+.|++
T Consensus 420 ~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~--~~~~~~~~~~~~v~~~~~sp----d~~~las~~~d~~i~i 493 (577)
T 2ymu_A 420 QTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVRGVAFSP----DGQTIASASDDKTVKL 493 (577)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTS--CEEEEEECCSSCEEEEEECT----TSCEEEEEETTSEEEE
T ss_pred EEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECCC--CEEEEEcCCCCCEEEEEEcC----CCCEEEEEeCCCEEEE
Confidence 332 2 23455666777777 78888 5455 67788899999999999999 7999999999999999
Q ss_pred EEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchhh
Q psy13856 172 WTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQR 237 (271)
Q Consensus 172 wd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 237 (271)
||.. ++. ...+.+|...|++++|+|+|++|++++.|+.|++||.. + +++..+.+|....
T Consensus 494 w~~~-~~~--~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~-~---~~~~~~~~h~~~v 552 (577)
T 2ymu_A 494 WNRN-GQL--LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-G---QLLQTLTGHSSSV 552 (577)
T ss_dssp EETT-SCE--EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT-S---CEEEEEECCSSCE
T ss_pred EcCC-CCE--EEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCC-C---CEEEEEcCCCCCE
Confidence 9964 454 67788999999999999999999999999999999964 4 5677777776553
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.9e-24 Score=179.05 Aligned_cols=192 Identities=31% Similarity=0.535 Sum_probs=149.6
Q ss_pred CCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCC--CCeEEEEeCCCcEEEEEeecCCCCceee
Q psy13856 33 RIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPK--LNRSATSSFHEAAKHLGTVQSSSPACLQ 103 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~~~d~~~~~~~~~~~ 103 (271)
.++.+|++|+.|+.|++||+ +..+..|... |.+++|+|+ +.+|++++.|+.|++||...........
T Consensus 67 ~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~ 142 (379)
T 3jrp_A 67 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS----VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPII 142 (379)
T ss_dssp GGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC----EEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEE
T ss_pred CCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcc----eEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEE
Confidence 34899999999999999998 4556778888 999999999 9999999999999999984322222222
Q ss_pred cc----ceeeEEEee-------------ccceee-----eEEEE--ee--CCceEEeEEecCCCcceEEEEEccCCCCC-
Q psy13856 104 PK----YFKLTVYST-------------KLTRIL-----ILVRI--CG--GDKWIEETKLENHSDWVRDVAWAPSWGLS- 156 (271)
Q Consensus 104 ~~----~~~~~~~~~-------------~~~~l~-----~~v~i--~~--~~~~~~~~~~~~h~~~v~~v~~~p~~~~~- 156 (271)
.. ......+.+ ++..++ +.|++ .. ...+.....+.+|...|.+++|+| +
T Consensus 143 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp----~~ 218 (379)
T 3jrp_A 143 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP----TV 218 (379)
T ss_dssp EECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC----CC
T ss_pred ecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECC----CC
Confidence 11 123344554 356666 67777 22 222456778899999999999999 6
Q ss_pred --CcEEEEEeCCCeEEEEEcCCCcee---eeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEec
Q psy13856 157 --KCMIASCSQDRKVIIWTSNDYVTW---TPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 157 --~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
+.+|++++.||.|++||++.+... .......|...|++++|+|++.+|++++.||.|++|+++..+.|.....+.
T Consensus 219 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~ 298 (379)
T 3jrp_A 219 LLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGEVH 298 (379)
T ss_dssp SSSEEEEEEETTSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEEEEEEEEC
T ss_pred CCCCeEEEEeCCCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcccccccee
Confidence 899999999999999999886421 122234588899999999999999999999999999999888888877665
Q ss_pred c
Q psy13856 232 K 232 (271)
Q Consensus 232 ~ 232 (271)
.
T Consensus 299 ~ 299 (379)
T 3jrp_A 299 Q 299 (379)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.94 E-value=6.6e-26 Score=189.56 Aligned_cols=190 Identities=14% Similarity=0.161 Sum_probs=142.2
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCC
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
.+......|++++|++|+.|+.|++||+ ...+.+|... |.+++|+|++++|++++.|+.|++||...+.
T Consensus 13 ~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~----v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~ 88 (377)
T 3dwl_C 13 PSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKI----VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG 88 (377)
T ss_dssp CCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSC----EEEEEECTTTCCEEEEETTSSEEEC------
T ss_pred cEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCce----EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC
Confidence 4555556679999999999999999998 4567789998 9999999999999999999999999984222
Q ss_pred CC-ceeeccce----eeEEEeeccceee-----eEEEE--eeCC-ceEEeEEecC-CCcceEEEEEccCCCCCCcEEEEE
Q psy13856 98 SP-ACLQPKYF----KLTVYSTKLTRIL-----ILVRI--CGGD-KWIEETKLEN-HSDWVRDVAWAPSWGLSKCMIASC 163 (271)
Q Consensus 98 ~~-~~~~~~~~----~~~~~~~~~~~l~-----~~v~i--~~~~-~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~ 163 (271)
.. .......+ ....++.+++.++ +.+++ ...+ .+.....+.+ |...|.+++|+| ++.+|+++
T Consensus 89 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~----~~~~l~~~ 164 (377)
T 3dwl_C 89 TWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHP----NNVLLAAG 164 (377)
T ss_dssp CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECT----TSSEEEEE
T ss_pred ceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcC----CCCEEEEE
Confidence 01 12222222 3444555677776 67888 2222 1224677777 999999999999 69999999
Q ss_pred eCCCeEEEEEcCCCc----------------eeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCc
Q psy13856 164 SQDRKVIIWTSNDYV----------------TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGA 223 (271)
Q Consensus 164 ~~dg~i~iwd~~~~~----------------~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~ 223 (271)
+.|+.|++||++... ......+ +|...|.+++|+|++.+|++++.|+.|++||++++..
T Consensus 165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~ 239 (377)
T 3dwl_C 165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ 239 (377)
T ss_dssp ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence 999999999986321 1113344 8999999999999999999999999999999987643
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.94 E-value=8e-25 Score=197.35 Aligned_cols=184 Identities=16% Similarity=0.185 Sum_probs=147.7
Q ss_pred CCCEEEEccCCCeEEeccc----------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceee
Q psy13856 34 IGHTLISCDTQAHIGIRST----------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQ 103 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~----------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~ 103 (271)
++++|+||+.|++|++|++ ...+.+|... |.+++|+|++++|++|+.|++|++||+ .++.+..
T Consensus 394 ~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~----v~~v~~s~~g~~l~sgs~Dg~v~vwd~---~~~~~~~ 466 (694)
T 3dm0_A 394 NADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHF----VEDVVLSSDGQFALSGSWDGELRLWDL---AAGVSTR 466 (694)
T ss_dssp CCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSC----EEEEEECTTSSEEEEEETTSEEEEEET---TTTEEEE
T ss_pred CCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCc----EEEEEECCCCCEEEEEeCCCcEEEEEC---CCCccee
Confidence 4579999999999999997 3467899999 999999999999999999999999998 6666655
Q ss_pred cc-ce----eeEEEeeccceee-----eEEEEee-CCc--eEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEE
Q psy13856 104 PK-YF----KLTVYSTKLTRIL-----ILVRICG-GDK--WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVI 170 (271)
Q Consensus 104 ~~-~~----~~~~~~~~~~~l~-----~~v~i~~-~~~--~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~ 170 (271)
.. .+ ....++.+++.++ +.|++++ .+. ........+|...|.+++|+|+. ...++++|+.|+.|+
T Consensus 467 ~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~--~~~~l~s~s~d~~v~ 544 (694)
T 3dm0_A 467 RFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT--LQPTIVSASWDKTVK 544 (694)
T ss_dssp EEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS--SSCEEEEEETTSCEE
T ss_pred EEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC--CcceEEEEeCCCeEE
Confidence 44 22 3455666677777 7888832 221 11111225788999999999941 136899999999999
Q ss_pred EEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEec
Q psy13856 171 IWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 171 iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
+||+++... ...+.+|.+.|++++|+|++.+|++++.|+.|++||+.++ +++..+.
T Consensus 545 vwd~~~~~~--~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~ 600 (694)
T 3dm0_A 545 VWNLSNCKL--RSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLE 600 (694)
T ss_dssp EEETTTCCE--EEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCB
T ss_pred EEECCCCcE--EEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEec
Confidence 999998776 6778899999999999999999999999999999999876 4444443
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.94 E-value=5e-24 Score=176.43 Aligned_cols=179 Identities=13% Similarity=0.116 Sum_probs=137.9
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
......|++.++++|+.|++|++||+ +..+.+|... |.+++|+|++++|++++.|++|++||. .....
T Consensus 80 ~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~----v~~v~~sp~~~~l~s~~~d~~i~~wd~---~~~~~ 152 (343)
T 2xzm_R 80 SDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSE----VYSVAFSPDNRQILSAGAEREIKLWNI---LGECK 152 (343)
T ss_dssp EEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSC----EEEEEECSSTTEEEEEETTSCEEEEES---SSCEE
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCc----EEEEEECCCCCEEEEEcCCCEEEEEec---cCCce
Confidence 33445579999999999999999998 6778899999 999999999999999999999999998 32211
Q ss_pred eecc-------ceeeEEEeecc----------ceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCc
Q psy13856 102 LQPK-------YFKLTVYSTKL----------TRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC 158 (271)
Q Consensus 102 ~~~~-------~~~~~~~~~~~----------~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~ 158 (271)
.... ......+++.+ .+++ +.|++ .... .....+.+|...|.+++|+| ++.
T Consensus 153 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~--~~~~~~~~h~~~v~~~~~s~----~g~ 226 (343)
T 2xzm_R 153 FSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNF--QIRYTFKAHESNVNHLSISP----NGK 226 (343)
T ss_dssp EECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETTT--EEEEEEECCSSCEEEEEECT----TSS
T ss_pred eeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCCC--ceeEEEcCccccceEEEECC----CCC
Confidence 1111 11233333333 3455 78888 4333 66778889999999999999 699
Q ss_pred EEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 159 MIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 159 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+|++|+.|+.|++||+..... ......+...|.+++|+|++.+++++ .|+.|++|++.+.
T Consensus 227 ~l~sgs~dg~v~iwd~~~~~~--~~~~~~~~~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~ 286 (343)
T 2xzm_R 227 YIATGGKDKKLLIWDILNLTY--PQREFDAGSTINQIAFNPKLQWVAVG-TDQGVKIFNLMTQ 286 (343)
T ss_dssp EEEEEETTCEEEEEESSCCSS--CSEEEECSSCEEEEEECSSSCEEEEE-ESSCEEEEESSSC
T ss_pred EEEEEcCCCeEEEEECCCCcc--cceeecCCCcEEEEEECCCCCEEEEE-CCCCEEEEEeCCC
Confidence 999999999999999955432 22222355679999999999988765 4788999999765
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-25 Score=183.35 Aligned_cols=151 Identities=14% Similarity=0.135 Sum_probs=124.4
Q ss_pred CCCCEEEEccCCCeEEeccc------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccc
Q psy13856 33 RIGHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKY 106 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~ 106 (271)
+++.+|++|+.|++|++||+ +..+.+|.+. |.+++|+|++++|++|+.|++|++||. .++.++....
T Consensus 216 ~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~----v~~v~~~p~~~~l~s~s~D~~i~lwd~---~~~~~~~~~~ 288 (380)
T 3iz6_a 216 LNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGD----INSVKFFPDGQRFGTGSDDGTCRLFDM---RTGHQLQVYN 288 (380)
T ss_dssp SSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSC----CCEEEECTTSSEEEEECSSSCEEEEET---TTTEEEEEEC
T ss_pred CCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCC----eEEEEEecCCCeEEEEcCCCeEEEEEC---CCCcEEEEec
Confidence 37889999999999999997 5678899999 999999999999999999999999998 4444333110
Q ss_pred eeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeee-
Q psy13856 107 FKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIM- 185 (271)
Q Consensus 107 ~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~- 185 (271)
.. ......+...|.+++|+| ++.++++|+.||.|++||...++. ...+
T Consensus 289 ~~-------------------------~~~~~~~~~~v~~~~~s~----~g~~l~~g~~dg~i~vwd~~~~~~--~~~~~ 337 (380)
T 3iz6_a 289 RE-------------------------PDRNDNELPIVTSVAFSI----SGRLLFAGYSNGDCYVWDTLLAEM--VLNLG 337 (380)
T ss_dssp CC-------------------------CSSSCCSSCSCSEEEECS----SSSEEEEECTTSCEEEEETTTCCE--EEEEC
T ss_pred cc-------------------------ccccccccCceEEEEECC----CCCEEEEEECCCCEEEEECCCCce--EEEEe
Confidence 00 000012334689999999 699999999999999999988775 3333
Q ss_pred ---ccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 186 ---NTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 186 ---~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.+|.+.|++++|+|+|.+|++|+.|++|++|++...
T Consensus 338 ~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 338 TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp CSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSS
T ss_pred cccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCC
Confidence 689999999999999999999999999999998754
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.93 E-value=9.5e-24 Score=178.00 Aligned_cols=181 Identities=18% Similarity=0.200 Sum_probs=144.6
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCC
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
+......|++.+|++|+.|++|++||+ ...+ .+... +.+++|+| ++++|++|+.|+.|++||. .++
T Consensus 168 v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~-~~~~~----v~~~~~~~~~~~~l~~~s~d~~v~iwd~---~~~ 239 (393)
T 1erj_A 168 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTL-SIEDG----VTTVAVSPGDGKYIAAGSLDRAVRVWDS---ETG 239 (393)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-ECSSC----EEEEEECSTTCCEEEEEETTSCEEEEET---TTC
T ss_pred EEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEE-EcCCC----cEEEEEECCCCCEEEEEcCCCcEEEEEC---CCC
Confidence 445555689999999999999999998 2233 34555 89999999 8999999999999999998 555
Q ss_pred ceeecc------------ceeeEEEeeccceee-----eEEEEeeCC------------ceEEeEEecCCCcceEEEEEc
Q psy13856 100 ACLQPK------------YFKLTVYSTKLTRIL-----ILVRICGGD------------KWIEETKLENHSDWVRDVAWA 150 (271)
Q Consensus 100 ~~~~~~------------~~~~~~~~~~~~~l~-----~~v~i~~~~------------~~~~~~~~~~h~~~v~~v~~~ 150 (271)
.++... ......++.+++.++ +.|++++-. ...+...+.+|...|.+++|+
T Consensus 240 ~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~ 319 (393)
T 1erj_A 240 FLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 319 (393)
T ss_dssp CEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEEC
T ss_pred cEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEEC
Confidence 554332 123445666677777 778882111 013456778999999999999
Q ss_pred cCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEec------CCCEEEEEECCCcEEEEEeCC
Q psy13856 151 PSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSL------TGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 151 p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~------~g~~l~s~s~D~~v~iw~~~~ 220 (271)
| ++.+|++|+.|+.|++||.+++.. ...+.+|...|.+++|++ ++.+|++|+.|++|+||++..
T Consensus 320 ~----~~~~l~sgs~D~~v~iwd~~~~~~--~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 320 Q----NDEYILSGSKDRGVLFWDKKSGNP--LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp G----GGCEEEEEETTSEEEEEETTTCCE--EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred C----CCCEEEEEeCCCeEEEEECCCCeE--EEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 9 689999999999999999999886 677889999999999986 678999999999999999863
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-23 Score=170.16 Aligned_cols=207 Identities=13% Similarity=0.122 Sum_probs=144.3
Q ss_pred CcceeEEeeceeEeecccc------------ccceecccCCCCCCCEEEEccCCCeEEeccc-----e------------
Q psy13856 3 SKEWLLVSCDGLLMTLKPT------------LEIETYTESPLRIGHTLISCDTQAHIGIRST-----I------------ 53 (271)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~------------ 53 (271)
+...|.+.+|+.+.-+... ....+......|++++|++|+.|++|++||+ +
T Consensus 35 ~~~~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~ 114 (318)
T 4ggc_A 35 SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS 114 (318)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred CCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEE
Confidence 3445666777776655321 1112344555689999999999999999997 2
Q ss_pred -----------------------------eeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 54 -----------------------------SLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 54 -----------------------------~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
..+.+|... +..++|+++++++++++.|+.|++||...++.......
T Consensus 115 ~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~ 190 (318)
T 4ggc_A 115 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE----VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 190 (318)
T ss_dssp EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC----EEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSE
T ss_pred eecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCc----eEEEEEcCCCCEEEEEecCcceeEEECCCCccccccee
Confidence 223345555 77889999999999999999999999843221111111
Q ss_pred --cc----eeeEEEeeccceee--------eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEE--eCCCe
Q psy13856 105 --KY----FKLTVYSTKLTRIL--------ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASC--SQDRK 168 (271)
Q Consensus 105 --~~----~~~~~~~~~~~~l~--------~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~--~~dg~ 168 (271)
.. .....+......+. +.+++.+...... .....+...+..+.|+|. +..++++ +.|+.
T Consensus 191 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~-~~~~~~~~~v~~~~~~~~----~~~~~~~sg~~d~~ 265 (318)
T 4ggc_A 191 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGAC-LSAVDAHSQVCSILWSPH----YKELISGHGFAQNQ 265 (318)
T ss_dssp EECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCE-EEEEECSSCEEEEEEETT----TTEEEEEECTTTCC
T ss_pred eecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccc-cccccceeeeeeeeeccc----ccceEEEEEcCCCE
Confidence 11 12222333333222 6788722222123 233447788999999994 6666554 47999
Q ss_pred EEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 169 VIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 169 i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
|++||+++++. ...+.+|.+.|++++|+|+|.+|++|+.|++|+|||+..
T Consensus 266 i~iwd~~~~~~--~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 266 LVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp EEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred EEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 99999999887 778899999999999999999999999999999999864
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.93 E-value=9.4e-24 Score=172.26 Aligned_cols=195 Identities=15% Similarity=0.201 Sum_probs=151.8
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
+......|++++|++|+.|+.|++||+ +..+.+|... |.+++|+|++++|++|+.|+.|++||. ++++
T Consensus 68 v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~d~~i~iwd~---~~~~ 140 (312)
T 4ery_A 68 ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNY----VFCCNFNPQSNLIVSGSFDESVRIWDV---KTGK 140 (312)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSSSEEEEEETTSCEEEEET---TTCC
T ss_pred eEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCC----EEEEEEcCCCCEEEEEeCCCcEEEEEC---CCCE
Confidence 344445579999999999999999998 6778899999 999999999999999999999999998 6666
Q ss_pred eeecc-c----eeeEEEeeccceee-----eEEEEeeCCceEEeEEe-cCCCcceEEEEEccCCCCCCcEEEEEeCCCeE
Q psy13856 101 CLQPK-Y----FKLTVYSTKLTRIL-----ILVRICGGDKWIEETKL-ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 169 (271)
Q Consensus 101 ~~~~~-~----~~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i 169 (271)
+.... . .....++.+++.++ +.+++.+....+....+ ..+...+..++|+| ++.+|++++.|+.|
T Consensus 141 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~~d~~i 216 (312)
T 4ery_A 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP----NGKYILAATLDNTL 216 (312)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT----TSSEEEEEETTTEE
T ss_pred EEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECC----CCCEEEEEcCCCeE
Confidence 65544 1 23344556677776 77888322221444444 45667899999999 69999999999999
Q ss_pred EEEEcCCCceeeeeeeccCCCCeEE--EEEe-cCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchh
Q psy13856 170 IIWTSNDYVTWTPFIMNTFDDVVWN--VSWS-LTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~h~~~v~~--v~~~-~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
++||+++++. ...+.+|.....+ ..++ +++.+|++|+.|+.|++||+.++ +.+.++.+|...
T Consensus 217 ~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~ 281 (312)
T 4ery_A 217 KLWDYSKGKC--LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTK---EIVQKLQGHTDV 281 (312)
T ss_dssp EEEETTTTEE--EEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTC---CEEEEECCCSSC
T ss_pred EEEECCCCcE--EEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCc---hhhhhhhccCCc
Confidence 9999998876 6667777654332 3344 67899999999999999999877 667778777654
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-23 Score=174.57 Aligned_cols=194 Identities=13% Similarity=0.118 Sum_probs=150.7
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCC
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
.+......|++++|++|+.|+.|++||. +..+.+|... |.+++|+|++++|++++.|+.|++||. .
T Consensus 10 ~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~~~~~dg~i~vwd~---~ 82 (372)
T 1k8k_C 10 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ----VTGVDWAPDSNRIVTCGTDRNAYVWTL---K 82 (372)
T ss_dssp CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSC----EEEEEEETTTTEEEEEETTSCEEEEEE---E
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCc----ccEEEEeCCCCEEEEEcCCCeEEEEEC---C
Confidence 3444555679999999999999999998 4567789888 999999999999999999999999998 4
Q ss_pred CCceeec---c----ceeeEEEeeccceee-----eEEEE--eeCC-ceEEeE-EecCCCcceEEEEEccCCCCCCcEEE
Q psy13856 98 SPACLQP---K----YFKLTVYSTKLTRIL-----ILVRI--CGGD-KWIEET-KLENHSDWVRDVAWAPSWGLSKCMIA 161 (271)
Q Consensus 98 ~~~~~~~---~----~~~~~~~~~~~~~l~-----~~v~i--~~~~-~~~~~~-~~~~h~~~v~~v~~~p~~~~~~~~l~ 161 (271)
.++.... . ......++.+++.++ +.+++ .... .+.... ...+|...|.+++|+| ++.+|+
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~l~ 158 (372)
T 1k8k_C 83 GRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP----NSVLLA 158 (372)
T ss_dssp TTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT----TSSEEE
T ss_pred CCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcC----CCCEEE
Confidence 4443222 1 123445566677776 66776 2222 222333 3467899999999999 689999
Q ss_pred EEeCCCeEEEEEcC------------------CCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCc
Q psy13856 162 SCSQDRKVIIWTSN------------------DYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGA 223 (271)
Q Consensus 162 s~~~dg~i~iwd~~------------------~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~ 223 (271)
+++.|+.|++||++ .+.. ...+..|...|.+++|+|++.+|++++.|+.|++||++++
T Consensus 159 ~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-- 234 (372)
T 1k8k_C 159 AGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL--MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK-- 234 (372)
T ss_dssp EEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE--EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT--
T ss_pred EEcCCCCEEEEEcccccccccccccccccccchhhh--eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC--
Confidence 99999999999964 3333 5667789999999999999999999999999999999876
Q ss_pred eeEEEEecccc
Q psy13856 224 WQCITEMGKTS 234 (271)
Q Consensus 224 ~~~~~~~~~~~ 234 (271)
+++..+..+.
T Consensus 235 -~~~~~~~~~~ 244 (372)
T 1k8k_C 235 -MAVATLASET 244 (372)
T ss_dssp -TEEEEEECSS
T ss_pred -ceeEEEccCC
Confidence 4555555543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.7e-24 Score=183.42 Aligned_cols=208 Identities=14% Similarity=0.032 Sum_probs=153.9
Q ss_pred eeccccccceecccCCCC-CCCEEEEccCCCeEEeccc-e---------eeeccccccccccceEEEEcCCCCeEEEEeC
Q psy13856 16 MTLKPTLEIETYTESPLR-IGHTLISCDTQAHIGIRST-I---------SLLQGSVYLRRESNKAGALSPKLNRSATSSF 84 (271)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~-~g~~l~s~s~d~~i~lwd~-~---------~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~ 84 (271)
.++...+.-.+......| ++.+|++|+.||+|++||+ . .....|... |.+++|+|++++|++|+.
T Consensus 56 ~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~s~ 131 (437)
T 3gre_A 56 ATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSST----VTQITMIPNFDAFAVSSK 131 (437)
T ss_dssp EEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSC----EEEEEECTTSSEEEEEET
T ss_pred eeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCC----EEEEEEeCCCCEEEEEeC
Confidence 334233444556666667 8999999999999999998 1 111267888 999999999999999999
Q ss_pred CCcEEEEEeecCCCCceeeccc-ee----------------eEE--Eeeccceee-----eEEEEeeCCceEEeEEecC-
Q psy13856 85 HEAAKHLGTVQSSSPACLQPKY-FK----------------LTV--YSTKLTRIL-----ILVRICGGDKWIEETKLEN- 139 (271)
Q Consensus 85 d~~i~~~d~~~~~~~~~~~~~~-~~----------------~~~--~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~- 139 (271)
|+.|++||+.....+++..... .. ... +..++..++ +.|++.+....+.+..+.+
T Consensus 132 dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 211 (437)
T 3gre_A 132 DGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENS 211 (437)
T ss_dssp TSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECC
T ss_pred CCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccC
Confidence 9999999983211333332221 00 000 112355555 7888833222367778877
Q ss_pred -CCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeec-cCCCCeEEEEEec----CCCEEEEEECCCcE
Q psy13856 140 -HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMN-TFDDVVWNVSWSL----TGDILTVSCGDNSV 213 (271)
Q Consensus 140 -h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~v~~~~----~g~~l~s~s~D~~v 213 (271)
|...|.+++|+| ++.+|++|+.||.|++||++.+.. ...+. .|...|.+++|+| ++.+|++++.|+.|
T Consensus 212 ~h~~~v~~~~~s~----~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i 285 (437)
T 3gre_A 212 PRHGAVSSICIDE----ECCVLILGTTRGIIDIWDIRFNVL--IRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFL 285 (437)
T ss_dssp GGGCCEEEEEECT----TSCEEEEEETTSCEEEEETTTTEE--EEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEE
T ss_pred CCCCceEEEEECC----CCCEEEEEcCCCeEEEEEcCCccE--EEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcE
Confidence 889999999999 699999999999999999998775 45544 7888999996665 57899999999999
Q ss_pred EEEEeCCCCceeEEEEecccchh
Q psy13856 214 SLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 214 ~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
++||++++ +++..+.++...
T Consensus 286 ~iwd~~~~---~~~~~~~~~~~~ 305 (437)
T 3gre_A 286 TIWNFVKG---HCQYAFINSDEQ 305 (437)
T ss_dssp EEEETTTT---EEEEEEESSSSC
T ss_pred EEEEcCCC---cEEEEEEcCCCC
Confidence 99999877 677777766533
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-23 Score=188.02 Aligned_cols=190 Identities=14% Similarity=0.159 Sum_probs=147.9
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
......+++++|++|+.|++|++||+ ...+.+|... |.+++|+|++++|++|+.|++|++||. .....
T Consensus 434 ~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~----v~~~~~s~~~~~l~s~s~D~~i~iwd~---~~~~~ 506 (694)
T 3dm0_A 434 EDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKD----VLSVAFSLDNRQIVSASRDRTIKLWNT---LGECK 506 (694)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEECTTSSCEEEEETTSCEEEECT---TSCEE
T ss_pred EEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCC----EEEEEEeCCCCEEEEEeCCCEEEEEEC---CCCcc
Confidence 34445679999999999999999998 6778899999 999999999999999999999999997 32222
Q ss_pred eecc----c----eeeEEEeecc--ceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCC
Q psy13856 102 LQPK----Y----FKLTVYSTKL--TRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQD 166 (271)
Q Consensus 102 ~~~~----~----~~~~~~~~~~--~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d 166 (271)
.... . .....++..+ ..++ +.|++++....+....+.+|.+.|.+++|+| ++.+|++|+.|
T Consensus 507 ~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp----dg~~l~sg~~D 582 (694)
T 3dm0_A 507 YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP----DGSLCASGGKD 582 (694)
T ss_dssp EEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT----TSSEEEEEETT
T ss_pred eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC----CCCEEEEEeCC
Confidence 2111 1 2333444443 2344 7888833333367788999999999999999 69999999999
Q ss_pred CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccc
Q psy13856 167 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
|.|++||+++++. ...+. +...+.+++|+|++.+|++++ |+.|++||++++ ..+..+..+.
T Consensus 583 g~i~iwd~~~~~~--~~~~~-~~~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~---~~~~~~~~~~ 643 (694)
T 3dm0_A 583 GVVLLWDLAEGKK--LYSLE-ANSVIHALCFSPNRYWLCAAT-EHGIKIWDLESK---SIVEDLKVDL 643 (694)
T ss_dssp SBCEEEETTTTEE--EECCB-CSSCEEEEEECSSSSEEEEEE-TTEEEEEETTTT---EEEEEECCCC
T ss_pred CeEEEEECCCCce--EEEec-CCCcEEEEEEcCCCcEEEEEc-CCCEEEEECCCC---CChhhhcccc
Confidence 9999999998875 44443 456899999999998887776 566999999877 6666665543
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-23 Score=175.17 Aligned_cols=183 Identities=14% Similarity=0.040 Sum_probs=147.0
Q ss_pred ceecccCCCCCC-CEEEEccCCCeEEeccc-----eeee--ccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEee
Q psy13856 24 IETYTESPLRIG-HTLISCDTQAHIGIRST-----ISLL--QGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTV 94 (271)
Q Consensus 24 ~~~~~~~~~~~g-~~l~s~s~d~~i~lwd~-----~~~~--~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~ 94 (271)
..+......|++ ++|++|+.|+.|++||+ ...+ .+|... |.+++|+| ++++|++++.|+.|++||+
T Consensus 74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~~l~s~~~d~~i~iwd~- 148 (383)
T 3ei3_B 74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDA----ITGMKFNQFNTNQLFVSSIRGATTLRDF- 148 (383)
T ss_dssp SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCB----EEEEEEETTEEEEEEEEETTTEEEEEET-
T ss_pred CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCc----eeEEEeCCCCCCEEEEEeCCCEEEEEEC-
Confidence 344555566788 89999999999999999 3333 368888 99999999 7899999999999999998
Q ss_pred cCCCCceeecc--------ceeeEEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCc-E
Q psy13856 95 QSSSPACLQPK--------YFKLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC-M 159 (271)
Q Consensus 95 ~~~~~~~~~~~--------~~~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~-~ 159 (271)
.. ...... ......++.+++.++ +.|++ ...+ ..+..+.+|...|.+++|+| ++. +
T Consensus 149 --~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~h~~~v~~~~~~~----~~~~~ 219 (383)
T 3ei3_B 149 --SG-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG--HEIFKEKLHKAKVTHAEFNP----RCDWL 219 (383)
T ss_dssp --TS-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS--CEEEEEECSSSCEEEEEECS----SCTTE
T ss_pred --CC-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC--CEEEEeccCCCcEEEEEECC----CCCCE
Confidence 43 222222 123455666677777 78888 4444 67888899999999999999 566 9
Q ss_pred EEEEeCCCeEEEEEcCC----CceeeeeeeccCCCCeEEEEEec-CCCEEEEEECCCcEEEEEeCCCCc
Q psy13856 160 IASCSQDRKVIIWTSND----YVTWTPFIMNTFDDVVWNVSWSL-TGDILTVSCGDNSVSLWKENTDGA 223 (271)
Q Consensus 160 l~s~~~dg~i~iwd~~~----~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~v~iw~~~~~~~ 223 (271)
|++|+.|+.|++||+++ ... ...+ +|...|.+++|+| ++.+|++++.|+.|++||+++...
T Consensus 220 l~s~~~d~~i~iwd~~~~~~~~~~--~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~ 285 (383)
T 3ei3_B 220 MATSSVDATVKLWDLRNIKDKNSY--IAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSK 285 (383)
T ss_dssp EEEEETTSEEEEEEGGGCCSTTCE--EEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTS
T ss_pred EEEEeCCCEEEEEeCCCCCcccce--EEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCcc
Confidence 99999999999999987 332 3333 7999999999999 999999999999999999987643
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.7e-23 Score=174.44 Aligned_cols=172 Identities=21% Similarity=0.239 Sum_probs=143.8
Q ss_pred cceecccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCC--CCeEEEEeCCCcEEEEEe
Q psy13856 23 EIETYTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPK--LNRSATSSFHEAAKHLGT 93 (271)
Q Consensus 23 ~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~~~d~ 93 (271)
.-.+......|++++|++|+.||.|++||+ +..+.+|... |.+++|+++ +++|++++.|+.|++||.
T Consensus 11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~~~l~s~~~dg~v~iwd~ 86 (379)
T 3jrp_A 11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGP----VWRVDWAHPKFGTILASCSYDGKVLIWKE 86 (379)
T ss_dssp CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC----EEEEEECCGGGCSEEEEEETTSCEEEEEE
T ss_pred cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCc----EEEEEeCCCCCCCEEEEeccCCEEEEEEc
Confidence 344455555679999999999999999998 5677899999 999999987 899999999999999998
Q ss_pred ecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCC--CcEEEEEeCCCeEEE
Q psy13856 94 VQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLS--KCMIASCSQDRKVII 171 (271)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~--~~~l~s~~~dg~i~i 171 (271)
. .+.+.....+.+|...|.+++|+| + +.+|++++.|+.|++
T Consensus 87 ~---------------------------------~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~l~~~~~d~~i~v 129 (379)
T 3jrp_A 87 E---------------------------------NGRWSQIAVHAVHSASVNSVQWAP----HEYGPLLLVASSDGKVSV 129 (379)
T ss_dssp E---------------------------------TTEEEEEEEECCCSSCEEEEEECC----GGGCSEEEEEETTSEEEE
T ss_pred C---------------------------------CCceeEeeeecCCCcceEEEEeCC----CCCCCEEEEecCCCcEEE
Confidence 2 333346677788999999999999 5 899999999999999
Q ss_pred EEcCCCceeeeeeeccCCCCeEEEEEec-------------CCCEEEEEECCCcEEEEEeCCCC-ceeEEEEecccch
Q psy13856 172 WTSNDYVTWTPFIMNTFDDVVWNVSWSL-------------TGDILTVSCGDNSVSLWKENTDG-AWQCITEMGKTSE 235 (271)
Q Consensus 172 wd~~~~~~~~~~~~~~h~~~v~~v~~~~-------------~g~~l~s~s~D~~v~iw~~~~~~-~~~~~~~~~~~~~ 235 (271)
||++.........+..|...|.+++|+| ++.+|++++.|+.|++||++.+. .+.....+.+|..
T Consensus 130 ~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~ 207 (379)
T 3jrp_A 130 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD 207 (379)
T ss_dssp EECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred EecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC
Confidence 9999875433556788999999999999 69999999999999999998654 3455566666554
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=173.73 Aligned_cols=179 Identities=12% Similarity=0.100 Sum_probs=139.2
Q ss_pred ccCCCC-CCCEEEEccCCCeEEeccc-----eeee---ccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 28 TESPLR-IGHTLISCDTQAHIGIRST-----ISLL---QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 28 ~~~~~~-~g~~l~s~s~d~~i~lwd~-----~~~~---~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
.....| ++.+|++|+.|+.|++||+ +..+ .+|... |.+++|+|++++|++++.|+.|++||. ..
T Consensus 120 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~i~d~---~~ 192 (366)
T 3k26_A 120 ELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDE----VLSADYDLLGEKIMSCGMDHSLKLWRI---NS 192 (366)
T ss_dssp EEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSC----EEEEEECTTSSEEEEEETTSCEEEEES---CS
T ss_pred EEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCc----eeEEEECCCCCEEEEecCCCCEEEEEC---CC
Confidence 334456 8899999999999999998 4444 678888 999999999999999999999999998 44
Q ss_pred Cceeecc---------------------------------ceeeEEEeeccceee-----eEEEE--eeCC---------
Q psy13856 99 PACLQPK---------------------------------YFKLTVYSTKLTRIL-----ILVRI--CGGD--------- 129 (271)
Q Consensus 99 ~~~~~~~---------------------------------~~~~~~~~~~~~~l~-----~~v~i--~~~~--------- 129 (271)
++..... ......+. ++.++ +.+++ ....
T Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~ 270 (366)
T 3k26_A 193 KRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKP 270 (366)
T ss_dssp HHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCT
T ss_pred CccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccccccccc
Confidence 3332111 11122222 55555 67777 2221
Q ss_pred ---ceEEeEEecCCCcceEEEEEccCCCCC--CcEEEEEeCCCeEEEEEcCCCcee--eeeeeccC--CCCeEEEEEecC
Q psy13856 130 ---KWIEETKLENHSDWVRDVAWAPSWGLS--KCMIASCSQDRKVIIWTSNDYVTW--TPFIMNTF--DDVVWNVSWSLT 200 (271)
Q Consensus 130 ---~~~~~~~~~~h~~~v~~v~~~p~~~~~--~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~h--~~~v~~v~~~~~ 200 (271)
....+..+.+|...|.+++|+| + +.+|++|+.||.|++||+++++.. ....+.+| ...|++++|+|+
T Consensus 271 ~~~~~~~~~~~~~~~~~v~~~~~s~----~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 346 (366)
T 3k26_A 271 SESNVTILGRFDYSQCDIWYMRFSM----DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRD 346 (366)
T ss_dssp TCCCEEEEEEEECSSCCSSCCCCEE----CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTT
T ss_pred CCcchheeccccccCCcEEEEEEcC----CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCC
Confidence 1245778888999999999999 6 899999999999999999987532 13356666 789999999999
Q ss_pred CCEEEEEECCCcEEEEEeC
Q psy13856 201 GDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 201 g~~l~s~s~D~~v~iw~~~ 219 (271)
+++|++++.||.|++||+.
T Consensus 347 ~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 347 SSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp SSEEEEEETTSEEEEEEC-
T ss_pred CCeEEEEeCCCEEEEEEec
Confidence 9999999999999999975
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.2e-22 Score=164.07 Aligned_cols=203 Identities=13% Similarity=0.088 Sum_probs=158.0
Q ss_pred cceeEEeeceeEeecccc---------------ccceecccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccc
Q psy13856 4 KEWLLVSCDGLLMTLKPT---------------LEIETYTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVY 61 (271)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~ 61 (271)
+..++...||.+..+... ....+......|++++|++++.|+.|++||+ ...+..|..
T Consensus 63 ~~~l~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~ 142 (337)
T 1gxr_A 63 TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142 (337)
T ss_dssp SSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS
T ss_pred CcEEEEcCCCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCC
Confidence 345666667777665421 1112333444579999999999999999998 345677888
Q ss_pred cccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-c----eeeEEEeeccceee-----eEEEEeeCCce
Q psy13856 62 LRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-Y----FKLTVYSTKLTRIL-----ILVRICGGDKW 131 (271)
Q Consensus 62 ~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~----~~~~~~~~~~~~l~-----~~v~i~~~~~~ 131 (271)
. |.+++|+|+++++++++.|+.|++||. .+++..... . .....++.+++.++ +.+++.+....
T Consensus 143 ~----i~~~~~~~~~~~l~~~~~dg~v~~~d~---~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~ 215 (337)
T 1gxr_A 143 A----CYALAISPDSKVCFSCCSDGNIAVWDL---HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215 (337)
T ss_dssp C----EEEEEECTTSSEEEEEETTSCEEEEET---TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred c----eEEEEECCCCCEEEEEeCCCcEEEEeC---CCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC
Confidence 8 999999999999999999999999998 666555443 1 23445556677776 78888222211
Q ss_pred EEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCC
Q psy13856 132 IEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDN 211 (271)
Q Consensus 132 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 211 (271)
+....+. |...+.+++|+| ++.++++++.|+.|++||++..+ ...+..|...|.+++|+|++.+|++++.|+
T Consensus 216 ~~~~~~~-~~~~v~~~~~s~----~~~~l~~~~~~~~i~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 287 (337)
T 1gxr_A 216 RQLQQHD-FTSQIFSLGYCP----TGEWLAVGMESSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGKWFVSTGKDN 287 (337)
T ss_dssp EEEEEEE-CSSCEEEEEECT----TSSEEEEEETTSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred ceEeeec-CCCceEEEEECC----CCCEEEEEcCCCcEEEEECCCCC---eEEEcCCccceeEEEECCCCCEEEEecCCC
Confidence 4555544 778899999999 69999999999999999999876 456778999999999999999999999999
Q ss_pred cEEEEEeCCC
Q psy13856 212 SVSLWKENTD 221 (271)
Q Consensus 212 ~v~iw~~~~~ 221 (271)
.|++|++.++
T Consensus 288 ~i~~~~~~~~ 297 (337)
T 1gxr_A 288 LLNAWRTPYG 297 (337)
T ss_dssp EEEEEETTTC
T ss_pred cEEEEECCCC
Confidence 9999999876
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.92 E-value=8.4e-23 Score=173.61 Aligned_cols=208 Identities=14% Similarity=0.130 Sum_probs=147.1
Q ss_pred CcceeEEeeceeEeecccc------------ccceecccCCCCCCCEEEEccCCCeEEeccc-----e------------
Q psy13856 3 SKEWLLVSCDGLLMTLKPT------------LEIETYTESPLRIGHTLISCDTQAHIGIRST-----I------------ 53 (271)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~------------ 53 (271)
+...|.+..|+.+..+... ....+.+....|+|++|++|+.||.|++||+ +
T Consensus 115 ~~n~lAvgld~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~ 194 (420)
T 4gga_A 115 SGNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGS 194 (420)
T ss_dssp TTSEEEEEETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEE
T ss_pred CCCEEEEEeCCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEE
Confidence 3445666667666655311 1112344555679999999999999999997 2
Q ss_pred -----------------------------eeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc-eee
Q psy13856 54 -----------------------------SLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA-CLQ 103 (271)
Q Consensus 54 -----------------------------~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~-~~~ 103 (271)
..+.+|... +..+.|+|+++++++++.|+.+++|+...++... .+.
T Consensus 195 ~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~----~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~ 270 (420)
T 4gga_A 195 LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQE----VCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQ 270 (420)
T ss_dssp EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC----EEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSE
T ss_pred EeeCCCEEEEEeCCCceeEeeecccceeeEEecccccc----eeeeeecCCCCeeeeeeccccceEEeeccccccceeee
Confidence 223445555 7778899999999999999999999984322111 111
Q ss_pred cc-----ceeeEEEeecc-ceee-------eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe--CCCe
Q psy13856 104 PK-----YFKLTVYSTKL-TRIL-------ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS--QDRK 168 (271)
Q Consensus 104 ~~-----~~~~~~~~~~~-~~l~-------~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~--~dg~ 168 (271)
.. ......++... ..++ +.|++++.........+..| ..+.++.|+| ++..+++++ .|+.
T Consensus 271 ~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~-~~v~~~~~~~----~~~~lv~~sg~~d~~ 345 (420)
T 4gga_A 271 TFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH-SQVCSILWSP----HYKELISGHGFAQNQ 345 (420)
T ss_dssp EECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECS-SCEEEEEEET----TTTEEEEEECTTTCC
T ss_pred eecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccc-cceeeeeecC----CCCeEEEEEecCCCE
Confidence 11 11333444443 3333 67888332222666666644 6788999999 467776654 7999
Q ss_pred EEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 169 VIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 169 i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
|++||+.+++. +..+.+|.+.|++++|+|+|.+|++|+.|++|+|||+...
T Consensus 346 I~iwd~~~~~~--v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 346 LVIWKYPTMAK--VAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEEEETTTCCE--EEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred EEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 99999999887 7788999999999999999999999999999999998754
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.92 E-value=7.3e-23 Score=167.86 Aligned_cols=176 Identities=13% Similarity=0.121 Sum_probs=145.0
Q ss_pred ccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCcee
Q psy13856 28 TESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACL 102 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~ 102 (271)
.....|+++++++++.|+.|++||+ ...+..|... |.+++|+|++++|++++.|+.|++||. ++++..
T Consensus 146 ~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~dg~i~~~d~---~~~~~~ 218 (337)
T 1gxr_A 146 ALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG----ASCIDISNDGTKLWTGGLDNTVRSWDL---REGRQL 218 (337)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEETTSEEEEEET---TTTEEE
T ss_pred EEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCc----eEEEEECCCCCEEEEEecCCcEEEEEC---CCCceE
Confidence 3344579999999999999999998 6677889998 999999999999999999999999998 666665
Q ss_pred eccce----eeEEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEE
Q psy13856 103 QPKYF----KLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172 (271)
Q Consensus 103 ~~~~~----~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iw 172 (271)
..... ....++.+++.++ +.+++ .... .....+..|...|.+++|+| ++.+|++++.||.|++|
T Consensus 219 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~--~~~~~~~~~~~~v~~~~~~~----~~~~l~~~~~dg~i~~~ 292 (337)
T 1gxr_A 219 QQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK--PDKYQLHLHESCVLSLKFAY----CGKWFVSTGKDNLLNAW 292 (337)
T ss_dssp EEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--SCEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEE
T ss_pred eeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCC--CCeEEEcCCccceeEEEECC----CCCEEEEecCCCcEEEE
Confidence 54422 3445556677776 66777 2222 22346778999999999999 69999999999999999
Q ss_pred EcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 173 TSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 173 d~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
|+.+++. .....|...+.+++|+|++++|++++.||.|++|++.
T Consensus 293 ~~~~~~~---~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 336 (337)
T 1gxr_A 293 RTPYGAS---IFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp ETTTCCE---EEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred ECCCCeE---EEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEEEe
Confidence 9998774 2445688899999999999999999999999999974
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-23 Score=175.68 Aligned_cols=179 Identities=9% Similarity=-0.023 Sum_probs=141.8
Q ss_pred CCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-
Q psy13856 32 LRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK- 105 (271)
Q Consensus 32 ~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~- 105 (271)
.+++++|++|+.|+.|++||+ ...+.+|... |.+++|+|++++|++|+.|+.|++||+ .++++....
T Consensus 106 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~s~d~~i~iwd~---~~~~~~~~~~ 178 (420)
T 3vl1_A 106 KLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSE----ITKLKFFPSGEALISSSQDMQLKIWSV---KDGSNPRTLI 178 (420)
T ss_dssp CSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSC----EEEEEECTTSSEEEEEETTSEEEEEET---TTCCCCEEEE
T ss_pred ecCCCEEEEEECCCCEEEEeCCCcceeeecccccCc----cEEEEECCCCCEEEEEeCCCeEEEEeC---CCCcCceEEc
Confidence 479999999999999999998 5566799999 999999999999999999999999999 555444433
Q ss_pred ----ceeeEEEeeccceee-----eEEEEeeCCceEEeEEecC---CCcceEEEEE---------------------ccC
Q psy13856 106 ----YFKLTVYSTKLTRIL-----ILVRICGGDKWIEETKLEN---HSDWVRDVAW---------------------APS 152 (271)
Q Consensus 106 ----~~~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~---h~~~v~~v~~---------------------~p~ 152 (271)
......++.+++.++ +.+++++....+....+.. |...+.+++| +|
T Consensus 179 ~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 257 (420)
T 3vl1_A 179 GHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGT- 257 (420)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSC-
T ss_pred CCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcC-
Confidence 224455666777777 7788832222256666654 4445555554 56
Q ss_pred CCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCC-EEEEEECCCcEEEEEeCCCC
Q psy13856 153 WGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGD-ILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 153 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~v~iw~~~~~~ 222 (271)
++.+|++|+.||.|++||++++... ......|...|.+++|+|++. +|++++.||.|++||++++.
T Consensus 258 ---~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~ 324 (420)
T 3vl1_A 258 ---YGKYVIAGHVSGVITVHNVFSKEQT-IQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE 324 (420)
T ss_dssp ---TTEEEEEEETTSCEEEEETTTCCEE-EEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred ---CCCEEEEEcCCCeEEEEECCCCcee-EEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 6899999999999999999987752 334456889999999999998 99999999999999998753
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.92 E-value=3.6e-23 Score=169.93 Aligned_cols=165 Identities=13% Similarity=0.172 Sum_probs=131.7
Q ss_pred cceecccCCCCCCCEEEEccCCCeEEeccc---------eeeeccccccccccceEEEEcC--CCCeEEEEeCCCcEEEE
Q psy13856 23 EIETYTESPLRIGHTLISCDTQAHIGIRST---------ISLLQGSVYLRRESNKAGALSP--KLNRSATSSFHEAAKHL 91 (271)
Q Consensus 23 ~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~---------~~~~~~h~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~~~ 91 (271)
.-.+......|++.+|++|+.||.|++||+ ...+.+|... |.+++|+| ++++|++++.|+.|++|
T Consensus 11 ~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~d~~~l~s~~~dg~v~vw 86 (351)
T 3f3f_A 11 DDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSS----IVAIDWASPEYGRIIASASYDKTVKLW 86 (351)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSC----EEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred ccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCc----EEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence 344555555679999999999999999997 4455789999 99999999 69999999999999999
Q ss_pred EeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCC--CcEEEEEeCCCeE
Q psy13856 92 GTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLS--KCMIASCSQDRKV 169 (271)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~--~~~l~s~~~dg~i 169 (271)
|.. .+.... ....+.....+.+|...|.+++|+| + +.+|++++.||.|
T Consensus 87 d~~---~~~~~~-----------------------~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~l~~~~~dg~v 136 (351)
T 3f3f_A 87 EED---PDQEEC-----------------------SGRRWNKLCTLNDSKGSLYSVKFAP----AHLGLKLACLGNDGIL 136 (351)
T ss_dssp EEC---TTSCTT-----------------------SSCSEEEEEEECCCSSCEEEEEECC----GGGCSEEEEEETTCEE
T ss_pred ecC---CCcccc-----------------------cccCcceeeeecccCCceeEEEEcC----CCCCcEEEEecCCCcE
Confidence 983 322111 0112356677778999999999999 6 8899999999999
Q ss_pred EEEEcCCCce----------------------------------------------------------eeeeeeccCCCC
Q psy13856 170 IIWTSNDYVT----------------------------------------------------------WTPFIMNTFDDV 191 (271)
Q Consensus 170 ~iwd~~~~~~----------------------------------------------------------~~~~~~~~h~~~ 191 (271)
++||+++... .....+.+|...
T Consensus 137 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~ 216 (351)
T 3f3f_A 137 RLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSL 216 (351)
T ss_dssp EEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSC
T ss_pred EEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcc
Confidence 9999865431 013345578999
Q ss_pred eEEEEEecCC----CEEEEEECCCcEEEEEeCCC
Q psy13856 192 VWNVSWSLTG----DILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 192 v~~v~~~~~g----~~l~s~s~D~~v~iw~~~~~ 221 (271)
|++++|+|++ .+|++++.|+.|++||++..
T Consensus 217 i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 217 IRSISWAPSIGRWYQLIATGCKDGRIRIFKITEK 250 (351)
T ss_dssp EEEEEECCCSSCSSEEEEEEETTSCEEEEEEEEC
T ss_pred eeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCC
Confidence 9999999998 89999999999999999754
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=8.5e-23 Score=169.40 Aligned_cols=185 Identities=15% Similarity=0.092 Sum_probs=147.5
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
-.+......|++.+|++|+.||.|++||+ +..+.+|... |.+++|+|++++|++++.|+.|++||+ .+
T Consensus 33 ~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~~~dg~i~iwd~---~~ 105 (369)
T 3zwl_B 33 RPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGT----IWSIDVDCFTKYCVTGSADYSIKLWDV---SN 105 (369)
T ss_dssp SCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSC----EEEEEECTTSSEEEEEETTTEEEEEET---TT
T ss_pred ceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCc----EEEEEEcCCCCEEEEEeCCCeEEEEEC---CC
Confidence 33444455569999999999999999998 7788899999 999999999999999999999999998 66
Q ss_pred Cceeeccc----eeeEEEeeccceee----------eEEEE--eeCC-c--------eEEeEEecCCCc--ceEEEEEcc
Q psy13856 99 PACLQPKY----FKLTVYSTKLTRIL----------ILVRI--CGGD-K--------WIEETKLENHSD--WVRDVAWAP 151 (271)
Q Consensus 99 ~~~~~~~~----~~~~~~~~~~~~l~----------~~v~i--~~~~-~--------~~~~~~~~~h~~--~v~~v~~~p 151 (271)
+++..... .....++.+++.++ +.+.+ .... . ......+..|.. .+.+++|+|
T Consensus 106 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (369)
T 3zwl_B 106 GQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWST 185 (369)
T ss_dssp CCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECG
T ss_pred CcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEcC
Confidence 66655542 23445555666655 35555 1111 0 013344455665 899999999
Q ss_pred CCCCCCcEEEEEeCCCeEEEEEcCC-CceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 152 SWGLSKCMIASCSQDRKVIIWTSND-YVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 152 ~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
++.+|++++.||.|++||+++ ... ...+..|...|.+++|+|++.+|++++.|+.|++||+++.
T Consensus 186 ----~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~ 250 (369)
T 3zwl_B 186 ----KGKYIIAGHKDGKISKYDVSNNYEY--VDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL 250 (369)
T ss_dssp ----GGCEEEEEETTSEEEEEETTTTTEE--EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred ----CCCEEEEEcCCCEEEEEECCCCcEe--EEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence 699999999999999999998 443 6778889999999999999999999999999999999876
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=9.7e-23 Score=172.22 Aligned_cols=192 Identities=10% Similarity=0.043 Sum_probs=152.5
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
+......|++++|++|+.|+.|++||. +..+..|... |.+++|+|++++|++++.|+.+++|+. .++..
T Consensus 111 v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d~~i~iwd~---~~~~~ 183 (425)
T 1r5m_A 111 VTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAP----IVSVKWNKDGTHIISMDVENVTILWNV---ISGTV 183 (425)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSC----EEEEEECTTSSEEEEEETTCCEEEEET---TTTEE
T ss_pred eEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCcc----EEEEEECCCCCEEEEEecCCeEEEEEC---CCCcE
Confidence 444445679999999999999999997 6778889999 999999999999999999999999998 66655
Q ss_pred eeccc--------------------eeeEEEeeccceee----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCC
Q psy13856 102 LQPKY--------------------FKLTVYSTKLTRIL----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSK 157 (271)
Q Consensus 102 ~~~~~--------------------~~~~~~~~~~~~l~----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 157 (271)
..... .....+...+..++ +.+++.+.........+.+|...|.+++|+| ++
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~----~~ 259 (425)
T 1r5m_A 184 MQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND----TN 259 (425)
T ss_dssp EEEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET----TT
T ss_pred EEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC----CC
Confidence 54431 11222333333333 6677722221256677888999999999999 68
Q ss_pred cEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccc
Q psy13856 158 CMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 158 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
.+|++++.|+.|++||+++.+. ...+..|...|.+++|+|++ ++++++.|+.|++||++++ +.+..+..+.
T Consensus 260 ~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~ 330 (425)
T 1r5m_A 260 KLLLSASDDGTLRIWHGGNGNS--QNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---TLLALSIVDG 330 (425)
T ss_dssp TEEEEEETTSCEEEECSSSBSC--SEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---EEEEEEECTT
T ss_pred CEEEEEcCCCEEEEEECCCCcc--ceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---cEeEecccCC
Confidence 9999999999999999998776 66778899999999999999 9999999999999999876 5555555443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-22 Score=165.51 Aligned_cols=184 Identities=16% Similarity=0.144 Sum_probs=136.9
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
......|+|++|++|+.|+.|++|+. ......+... +....+++++..|++++.|+.+++||. .....
T Consensus 90 ~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~s~d~~~~~~d~---~~~~~ 162 (340)
T 4aow_A 90 SDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD----VLSVAFSSDNRQIVSGSRDKTIKLWNT---LGVCK 162 (340)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEECTTSSCEEEEETTSCEEEECT---TSCEE
T ss_pred EEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCc----eeEEEEeecCccceeecCCCeEEEEEe---CCCce
Confidence 33444579999999999999999999 4455566666 788999999999999999999999997 33322
Q ss_pred eecc--ce----eeEEEeecc--ceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCe
Q psy13856 102 LQPK--YF----KLTVYSTKL--TRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK 168 (271)
Q Consensus 102 ~~~~--~~----~~~~~~~~~--~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~ 168 (271)
.... .+ ....+.... ..++ +.+++.+....+....+.+|.+.|.+++|+| ++.+|++|+.|+.
T Consensus 163 ~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~----~~~~l~s~s~Dg~ 238 (340)
T 4aow_A 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSP----DGSLCASGGKDGQ 238 (340)
T ss_dssp EEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT----TSSEEEEEETTCE
T ss_pred EEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECC----CCCEEEEEeCCCe
Confidence 2211 11 223333332 2333 6677733333377888999999999999999 6999999999999
Q ss_pred EEEEEcCCCceee--------------------------------------ee---------eeccCCCCeEEEEEecCC
Q psy13856 169 VIIWTSNDYVTWT--------------------------------------PF---------IMNTFDDVVWNVSWSLTG 201 (271)
Q Consensus 169 i~iwd~~~~~~~~--------------------------------------~~---------~~~~h~~~v~~v~~~~~g 201 (271)
|++||+++..... .. ...+|...|++++|+|+|
T Consensus 239 i~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg 318 (340)
T 4aow_A 239 AMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADG 318 (340)
T ss_dssp EEEEETTTTEEEEEEECSSCEEEEEECSSSSEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTS
T ss_pred EEEEEeccCceeeeecCCceEEeeecCCCCceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCC
Confidence 9999988643200 00 112567789999999999
Q ss_pred CEEEEEECCCcEEEEEeCCC
Q psy13856 202 DILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 202 ~~l~s~s~D~~v~iw~~~~~ 221 (271)
++|++|+.||.|+|||++++
T Consensus 319 ~~l~sgs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 319 QTLFAGYTDNLVRVWQVTIG 338 (340)
T ss_dssp SEEEEEETTSCEEEEEEEC-
T ss_pred CEEEEEeCCCEEEEEeCCCc
Confidence 99999999999999999876
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=168.91 Aligned_cols=194 Identities=10% Similarity=0.024 Sum_probs=152.0
Q ss_pred ccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 28 TESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
.....|++++|++++.|+.|++||+ ...+..|... |.+++|+|++++|++++.|+.+++|+........
T Consensus 57 ~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~ 132 (372)
T 1k8k_C 57 GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA----ARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW 132 (372)
T ss_dssp EEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC----EEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred EEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCc----eeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce
Confidence 3334579999999999999999998 2234678888 9999999999999999999999999995322111
Q ss_pred eeecc------ceeeEEEeeccceee-----eEEEEee------------------CCceEEeEEecCCCcceEEEEEcc
Q psy13856 101 CLQPK------YFKLTVYSTKLTRIL-----ILVRICG------------------GDKWIEETKLENHSDWVRDVAWAP 151 (271)
Q Consensus 101 ~~~~~------~~~~~~~~~~~~~l~-----~~v~i~~------------------~~~~~~~~~~~~h~~~v~~v~~~p 151 (271)
..... ......++.+++.++ +.+++.+ ......+..+.+|...|.+++|+|
T Consensus 133 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 212 (372)
T 1k8k_C 133 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 212 (372)
T ss_dssp EEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECS
T ss_pred eeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECC
Confidence 12111 224445566677776 6777732 111267788889999999999999
Q ss_pred CCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC-CCceeEEEEe
Q psy13856 152 SWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT-DGAWQCITEM 230 (271)
Q Consensus 152 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~-~~~~~~~~~~ 230 (271)
++.+|++++.|+.|++||+++++. ...+..|...|.+++|+|++.+|+++ .|+.|++|+++. .+.|..+..+
T Consensus 213 ----~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~ 285 (372)
T 1k8k_C 213 ----NGSRVAWVSHDSTVCLADADKKMA--VATLASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRL 285 (372)
T ss_dssp ----SSSEEEEEETTTEEEEEEGGGTTE--EEEEECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCC
T ss_pred ----CCCEEEEEeCCCEEEEEECCCCce--eEEEccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeecc
Confidence 689999999999999999998876 67788899999999999999988888 899999999986 2567776665
Q ss_pred cc
Q psy13856 231 GK 232 (271)
Q Consensus 231 ~~ 232 (271)
..
T Consensus 286 ~~ 287 (372)
T 1k8k_C 286 DV 287 (372)
T ss_dssp CC
T ss_pred Cc
Confidence 54
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.91 E-value=4.2e-23 Score=174.90 Aligned_cols=184 Identities=11% Similarity=-0.001 Sum_probs=139.9
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
+......|++++|++|+.|+.|++||+ +..+.+|... |.+++|+|++++|++++.|++|++||. .+++
T Consensus 142 v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~~~d~~v~iwd~---~~~~ 214 (420)
T 3vl1_A 142 ITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRAT----VTDIAIIDRGRNVLSASLDGTIRLWEC---GTGT 214 (420)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSC----EEEEEEETTTTEEEEEETTSCEEEEET---TTTE
T ss_pred cEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCc----EEEEEEcCCCCEEEEEcCCCcEEEeEC---CCCc
Confidence 344445679999999999999999998 6778899999 999999999999999999999999998 6665
Q ss_pred eeeccce--------eeE---------------------EEeeccceee-----eEEEEeeCCceEEeEE-ecCCCcceE
Q psy13856 101 CLQPKYF--------KLT---------------------VYSTKLTRIL-----ILVRICGGDKWIEETK-LENHSDWVR 145 (271)
Q Consensus 101 ~~~~~~~--------~~~---------------------~~~~~~~~l~-----~~v~i~~~~~~~~~~~-~~~h~~~v~ 145 (271)
+...... ... .++.+++.++ +.+++.+......... ..+|...|.
T Consensus 215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~ 294 (420)
T 3vl1_A 215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCN 294 (420)
T ss_dssp EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSCEE
T ss_pred eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCCce
Confidence 5544311 111 1223455555 6777722111133333 456889999
Q ss_pred EEEEccCCCCCCc-EEEEEeCCCeEEEEEcCCCceeeeeeecc-CCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 146 DVAWAPSWGLSKC-MIASCSQDRKVIIWTSNDYVTWTPFIMNT-FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 146 ~v~~~p~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
+++|+| ++. +|++|+.||.|++||++++... ...+.. |...+.++.| +++.+|++++.|+.|++|++....
T Consensus 295 ~~~~~~----~~~~~l~~g~~dg~i~vwd~~~~~~~-~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 295 SLTVDG----NNANYIYAGYENGMLAQWDLRSPECP-VGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp EEEECS----SCTTEEEEEETTSEEEEEETTCTTSC-SEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCTT
T ss_pred eEEEeC----CCCCEEEEEeCCCeEEEEEcCCCcCc-hhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCCC
Confidence 999999 466 9999999999999999987542 344554 6778888855 578899999999999999998643
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.5e-23 Score=182.59 Aligned_cols=173 Identities=9% Similarity=-0.041 Sum_probs=134.3
Q ss_pred CCCEEEEccCCCeEEeccc--e--------------eeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCC
Q psy13856 34 IGHTLISCDTQAHIGIRST--I--------------SLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~--~--------------~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
++.+||+|+.||+|++||+ . ..+.+|... |.+++|+++ ..|++|+.||+|++||+ +
T Consensus 224 ~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~----v~sv~~s~~-~~lasgs~DgtV~lWD~---~ 295 (524)
T 2j04_B 224 LVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSL----ITTFDFLSP-TTVVCGFKNGFVAEFDL---T 295 (524)
T ss_dssp SSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTC----EEEEEESSS-SEEEEEETTSEEEEEET---T
T ss_pred CCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCC----EEEEEecCC-CeEEEEeCCCEEEEEEC---C
Confidence 4689999999999999998 1 145678888 999999986 48999999999999998 4
Q ss_pred CCce-eecc-ce----eeE--EEeecc-ceee-----eEEEEeeCCceEEeEEecCCCc--ceEEEEEccCCCCCCcEEE
Q psy13856 98 SPAC-LQPK-YF----KLT--VYSTKL-TRIL-----ILVRICGGDKWIEETKLENHSD--WVRDVAWAPSWGLSKCMIA 161 (271)
Q Consensus 98 ~~~~-~~~~-~~----~~~--~~~~~~-~~l~-----~~v~i~~~~~~~~~~~~~~h~~--~v~~v~~~p~~~~~~~~l~ 161 (271)
++.. .... .+ ... .+..++ ..++ +.+++++....++...+.+|.. .|.+++|+| ++..++
T Consensus 296 ~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp----~~~~l~ 371 (524)
T 2j04_B 296 DPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCP----QIYSYI 371 (524)
T ss_dssp BCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEET----TTTEEE
T ss_pred CCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCC----CcCeEE
Confidence 3322 1111 22 222 233445 5666 8899933222244445556653 588999999 688999
Q ss_pred EEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 162 SCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 162 s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
+++.|++|++||++.+.+ ...+.+|.+.|++|+|+|+|.+|++|+.|++|++|++..
T Consensus 372 s~~~d~tv~lwd~~~~~~--~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~ 428 (524)
T 2j04_B 372 YSDGASSLRAVPSRAAFA--VHPLVSRETTITAIGVSRLHPMVLAGSADGSLIITNAAR 428 (524)
T ss_dssp EECSSSEEEEEETTCTTC--CEEEEECSSCEEEEECCSSCCBCEEEETTTEEECCBSCS
T ss_pred EeCCCCcEEEEECccccc--ceeeecCCCceEEEEeCCCCCeEEEEECCCEEEEEechH
Confidence 999999999999998876 566788999999999999999999999999999999753
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.3e-23 Score=189.52 Aligned_cols=173 Identities=9% Similarity=0.067 Sum_probs=125.7
Q ss_pred CCCCCCCEEEEccCCCeEEeccc----e---eeec---------cccccccccceEEEEcCCCCeEEEEeCCCcEEEEEe
Q psy13856 30 SPLRIGHTLISCDTQAHIGIRST----I---SLLQ---------GSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGT 93 (271)
Q Consensus 30 ~~~~~g~~l~s~s~d~~i~lwd~----~---~~~~---------~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~ 93 (271)
...|++++|++|+.|++|++||+ + ..+. +|... |++++|+|++++||+|+.|++|++|+.
T Consensus 442 ~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~----V~svafspdg~~LAsgs~DgtV~lwd~ 517 (902)
T 2oaj_A 442 LPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELA----VDKISFAAETLELAVSIETGDVVLFKY 517 (902)
T ss_dssp CCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCC----EEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred cccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCc----eeEEEecCCCCeEEEEecCcEEEEEEe
Confidence 34579999999999999999998 1 1111 67778 999999999999999999999999998
Q ss_pred ecCCCCceeec----------cceeeEEEeec-cceeeeEEEE-e-e----CCceEEeEEecCCCcceEEEEEccCCCCC
Q psy13856 94 VQSSSPACLQP----------KYFKLTVYSTK-LTRILILVRI-C-G----GDKWIEETKLENHSDWVRDVAWAPSWGLS 156 (271)
Q Consensus 94 ~~~~~~~~~~~----------~~~~~~~~~~~-~~~l~~~v~i-~-~----~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 156 (271)
.. ++.... ..+.. +... +.. +...+ . . ...++++..+.+|.+.|++|+|+| |
T Consensus 518 ~~---~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSp----d 586 (902)
T 2oaj_A 518 EV---NQFYSVENRPESGDLEMNFRR--FSLNNTNG--VLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSN----I 586 (902)
T ss_dssp EE---CCC---------------CCS--CCGGGSSC--SEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECB----T
T ss_pred cC---ccccCccccCCCcccceeeee--ccccCCcc--ccccccccCCCCCCCccceeEEEEcCCCcEEEEEecC----C
Confidence 43 211000 00000 0000 000 00001 0 0 001356788899999999999999 7
Q ss_pred CcEEEEEeCCCeEEEEEcCCCceee---eeeec-cCCCCeEEEEEe-----cCC---CEEEEEECCCcEEEEEe
Q psy13856 157 KCMIASCSQDRKVIIWTSNDYVTWT---PFIMN-TFDDVVWNVSWS-----LTG---DILTVSCGDNSVSLWKE 218 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~-~h~~~v~~v~~~-----~~g---~~l~s~s~D~~v~iw~~ 218 (271)
| +||+|+.|++|++||++...... ...+. +|.+.|++|+|+ ||| .+|++|+.|++|++||+
T Consensus 587 G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~ 659 (902)
T 2oaj_A 587 G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKI 659 (902)
T ss_dssp S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEE
T ss_pred c-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEE
Confidence 8 99999999999999998765321 11233 899999999999 885 89999999999999999
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=6e-23 Score=189.67 Aligned_cols=185 Identities=9% Similarity=-0.001 Sum_probs=144.2
Q ss_pred cceecccCCCCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 23 EIETYTESPLRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 23 ~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
...+......|++++||+|+.||.|++|+. ......|... |.+++|+| +++|++++.|++|++||+ .+
T Consensus 17 ~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~----V~~l~fsp-g~~L~S~s~D~~v~lWd~---~~ 88 (902)
T 2oaj_A 17 SSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSA----IKEMRFVK-GIYLVVINAKDTVYVLSL---YS 88 (902)
T ss_dssp SSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCC----EEEEEEET-TTEEEEEETTCEEEEEET---TT
T ss_pred CCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCC----EEEEEEcC-CCEEEEEECcCeEEEEEC---CC
Confidence 344555666679999999999999999998 2222356777 99999999 889999999999999999 66
Q ss_pred Cceeeccce----eeEEEeeccceee-----eEEEEe--eCCceEEe---------EEecCCCcceEEEEEccCCCCCCc
Q psy13856 99 PACLQPKYF----KLTVYSTKLTRIL-----ILVRIC--GGDKWIEE---------TKLENHSDWVRDVAWAPSWGLSKC 158 (271)
Q Consensus 99 ~~~~~~~~~----~~~~~~~~~~~l~-----~~v~i~--~~~~~~~~---------~~~~~h~~~v~~v~~~p~~~~~~~ 158 (271)
++++....+ ....++.++++++ +.|+++ ..+..... ..+.+|.+.|.+++|+|. ++.
T Consensus 89 ~~~~~~~~~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~---~~~ 165 (902)
T 2oaj_A 89 QKVLTTVFVPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR---DIG 165 (902)
T ss_dssp CSEEEEEECSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT---EEE
T ss_pred CcEEEEEcCCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC---CCC
Confidence 666655422 3444556677777 788882 23311111 234679999999999995 468
Q ss_pred EEEEEeCCCeEEEEEcCCCceeeeeeeccC------------------CCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 159 MIASCSQDRKVIIWTSNDYVTWTPFIMNTF------------------DDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 159 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h------------------~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
.+++|+.|+.| +||+++.+. ...+..| ...|++++|+|+|.+|++++.|++|++||+++
T Consensus 166 ~l~~g~~dg~v-lWd~~~~~~--~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~ 242 (902)
T 2oaj_A 166 TVLISYEYVTL-TYSLVENEI--KQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANS 242 (902)
T ss_dssp EEEEECSSCEE-EEETTTTEE--EEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTT
T ss_pred EEEEEeCCCcE-EEECCCCce--EEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCC
Confidence 99999999999 999998775 4444443 57899999999999999999999999999987
Q ss_pred C
Q psy13856 221 D 221 (271)
Q Consensus 221 ~ 221 (271)
+
T Consensus 243 g 243 (902)
T 2oaj_A 243 G 243 (902)
T ss_dssp C
T ss_pred C
Confidence 6
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-22 Score=163.82 Aligned_cols=169 Identities=9% Similarity=-0.000 Sum_probs=127.6
Q ss_pred CCCCEEEEcc--CCCeEEeccc------eeeeccccccccccceEEEEcC---CCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 33 RIGHTLISCD--TQAHIGIRST------ISLLQGSVYLRRESNKAGALSP---KLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 33 ~~g~~l~s~s--~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~---~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
++|+++.+++ .|+.|++|++ +..+.+|... +..++|++ ++..|++++.|++|++||. +++++
T Consensus 143 ~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~----v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl---~TGk~ 215 (356)
T 2w18_A 143 TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPE----ETILTFAEVQGMQEALLGTTIMNNIVIWNL---KTGQL 215 (356)
T ss_dssp TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCS----SCEEEEEEEETSTTEEEEEETTSEEEEEET---TTCCE
T ss_pred CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCc----eeeEEeeccCCCCceEEEecCCCcEEEEEC---CCCcE
Confidence 4566666643 6899999998 5666788888 99999999 7799999999999999999 88888
Q ss_pred eeccc-e-------eeEEEeecccee------------e-----eEEEE--eeCCceEEeEEe-----cCCCcceEEEEE
Q psy13856 102 LQPKY-F-------KLTVYSTKLTRI------------L-----ILVRI--CGGDKWIEETKL-----ENHSDWVRDVAW 149 (271)
Q Consensus 102 ~~~~~-~-------~~~~~~~~~~~l------------~-----~~v~i--~~~~~~~~~~~~-----~~h~~~v~~v~~ 149 (271)
+..+. . ....+++++..+ + +++++ ..++ +.+..+ .+|...+.+..+
T Consensus 216 l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tg--k~l~v~~~~~p~Gh~~~~lsg~~ 293 (356)
T 2w18_A 216 LKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTT--LSVGVMLYCLPPGQAGRFLEGDV 293 (356)
T ss_dssp EEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTT--EEEEEEEECCCTTCCCCEEEEEE
T ss_pred EEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCC--EEEEEEEeeccCCCcceeEcccc
Confidence 77662 1 123466666654 2 66777 2333 343333 366555443333
Q ss_pred ccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeE-EEEEecCCCEEEEEECCCcEEEEEe
Q psy13856 150 APSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVW-NVSWSLTGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 150 ~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~-~v~~~~~g~~l~s~s~D~~v~iw~~ 218 (271)
++.++++|+.|++|+|||+.++++ ...+.+|...+. +++|+|+|++|++|+.|++|+|||+
T Consensus 294 ------sg~~lASgS~DgTIkIWDl~tGk~--l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 294 ------KDHCAAAILTSGTIAIWDLLLGQC--TALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp ------ETTEEEEEETTSCEEEEETTTCSE--EEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred ------CCCEEEEEcCCCcEEEEECCCCcE--EEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 356899999999999999999987 778888987665 5899999999999999999999996
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.6e-22 Score=160.62 Aligned_cols=192 Identities=10% Similarity=0.058 Sum_probs=150.0
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
+..... +++.+|++|+.||.|++||+ ...+..|... |.+++|+|+++++++++.|+.+++|++......+
T Consensus 21 v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~ 95 (313)
T 3odt_A 21 VRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGF----LNSVCYDSEKELLLFGGKDTMINGVPLFATSGED 95 (313)
T ss_dssp EEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSC----EEEEEEETTTTEEEEEETTSCEEEEETTCCTTSC
T ss_pred cEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCcc----EEEEEECCCCCEEEEecCCCeEEEEEeeecCCCC
Confidence 333334 78999999999999999998 6667888888 9999999999999999999999999986444334
Q ss_pred eeecc-ce--eeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEE
Q psy13856 101 CLQPK-YF--KLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172 (271)
Q Consensus 101 ~~~~~-~~--~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iw 172 (271)
..... .+ .......++..++ +.+++.+.+ .....+..|...+.++.|.|. ++.++++++.|+.|++|
T Consensus 96 ~~~~~~~~~~~i~~~~~~~~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~v~~~~~~~~---~~~~l~~~~~d~~i~i~ 170 (313)
T 3odt_A 96 PLYTLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEG--SLVYNLQAHNASVWDAKVVSF---SENKFLTASADKTIKLW 170 (313)
T ss_dssp C-CEECCCSSCEEEEEEETTEEEEEETTSEEEEEETT--EEEEEEECCSSCEEEEEEEET---TTTEEEEEETTSCEEEE
T ss_pred cccchhhcccCEEEEEecCCEEEEEeCCCCEEEEcCC--cEEEecccCCCceeEEEEccC---CCCEEEEEECCCCEEEE
Confidence 33332 12 2222222455665 788885555 778888899999999999985 68999999999999999
Q ss_pred EcCCCceeeeeeecc-CCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccch
Q psy13856 173 TSNDYVTWTPFIMNT-FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSE 235 (271)
Q Consensus 173 d~~~~~~~~~~~~~~-h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 235 (271)
|.. .. ...+.. |...+.+++|+|++. +++++.|+.|++||++++ +.+..+..|..
T Consensus 171 d~~--~~--~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~ 226 (313)
T 3odt_A 171 QND--KV--IKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTYEGHES 226 (313)
T ss_dssp ETT--EE--EEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred ecC--ce--EEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhhhcCCc
Confidence 943 22 444555 889999999999988 999999999999999876 55666665543
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-23 Score=173.20 Aligned_cols=198 Identities=13% Similarity=0.145 Sum_probs=151.1
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc---------eeeeccccccccccceEEEEcCC-CCeEEEEeCCCcEEEEEeecC
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST---------ISLLQGSVYLRRESNKAGALSPK-LNRSATSSFHEAAKHLGTVQS 96 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~---------~~~~~~h~~~~~~~i~~~~~s~~-~~~l~s~s~d~~i~~~d~~~~ 96 (271)
......|++.+|++|+.|+.|++||+ +..+.+|... |.+++|+|+ +++|++++.|+.|++||....
T Consensus 71 ~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~ 146 (416)
T 2pm9_A 71 NDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSS----VKTVKFNAKQDNVLASGGNNGEIFIWDMNKC 146 (416)
T ss_dssp EEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSC----CCEEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred EEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccc----eEEEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence 34444579999999999999999998 4456788888 999999998 899999999999999998432
Q ss_pred C------CCceeec-c----ceeeEEEeec-cceee-----eEEEEeeCCceEEeEEecCC------CcceEEEEEccCC
Q psy13856 97 S------SPACLQP-K----YFKLTVYSTK-LTRIL-----ILVRICGGDKWIEETKLENH------SDWVRDVAWAPSW 153 (271)
Q Consensus 97 ~------~~~~~~~-~----~~~~~~~~~~-~~~l~-----~~v~i~~~~~~~~~~~~~~h------~~~v~~v~~~p~~ 153 (271)
. ....... . ......++.+ +..++ +.|++.+....+....+..| ...|.+++|+|.
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~- 225 (416)
T 2pm9_A 147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPK- 225 (416)
T ss_dssp SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSS-
T ss_pred ccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCC-
Confidence 2 1111100 1 2244556665 45555 77888322222666677665 788999999995
Q ss_pred CCCCcEEEEEeCCC---eEEEEEcCCCceeeeeeec-cCCCCeEEEEEec-CCCEEEEEECCCcEEEEEeCCCCceeEEE
Q psy13856 154 GLSKCMIASCSQDR---KVIIWTSNDYVTWTPFIMN-TFDDVVWNVSWSL-TGDILTVSCGDNSVSLWKENTDGAWQCIT 228 (271)
Q Consensus 154 ~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~-~h~~~v~~v~~~~-~g~~l~s~s~D~~v~iw~~~~~~~~~~~~ 228 (271)
+..++++++.|+ .|++||+++.... ...+. +|...|.+++|+| ++.+|++++.|+.|++||++++ +.+.
T Consensus 226 --~~~~l~~~~~d~~~~~i~~~d~~~~~~~-~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---~~~~ 299 (416)
T 2pm9_A 226 --NSTRVATATGSDNDPSILIWDLRNANTP-LQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---EQLS 299 (416)
T ss_dssp --CTTEEEEEECCSSSCCCCEEETTSTTSC-SBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---CEEE
T ss_pred --CCCEEEEEECCCCCceEEEEeCCCCCCC-cEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---ccce
Confidence 347999999999 9999999986321 55666 8999999999999 8999999999999999999876 5666
Q ss_pred Eecccch
Q psy13856 229 EMGKTSE 235 (271)
Q Consensus 229 ~~~~~~~ 235 (271)
.+..|..
T Consensus 300 ~~~~~~~ 306 (416)
T 2pm9_A 300 QFPARGN 306 (416)
T ss_dssp EEECSSS
T ss_pred eecCCCC
Confidence 6666543
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.91 E-value=5.4e-22 Score=170.38 Aligned_cols=185 Identities=12% Similarity=0.120 Sum_probs=148.2
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccc-e
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKY-F 107 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~-~ 107 (271)
++.+|++|+.||.|++||. +..+.+|.+. |.+++|+|++ .+++|+.|++|++||. .++++..... +
T Consensus 131 ~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~----V~~l~~~~~~-~l~s~s~dg~i~vwd~---~~~~~~~~~~~h 202 (464)
T 3v7d_B 131 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG----VWALKYAHGG-ILVSGSTDRTVRVWDI---KKGCCTHVFEGH 202 (464)
T ss_dssp ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECSTT-EEEEEETTSCEEEEET---TTTEEEEEECCC
T ss_pred CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcC----EEEEEEcCCC-EEEEEeCCCCEEEEEC---CCCcEEEEECCC
Confidence 6789999999999999998 7778899999 9999999988 9999999999999999 6666665542 2
Q ss_pred ----eeEEEe--eccceee-----eEEEE-e-eCCce---------------------EEeEEecCCCcceEEEEEccCC
Q psy13856 108 ----KLTVYS--TKLTRIL-----ILVRI-C-GGDKW---------------------IEETKLENHSDWVRDVAWAPSW 153 (271)
Q Consensus 108 ----~~~~~~--~~~~~l~-----~~v~i-~-~~~~~---------------------~~~~~~~~h~~~v~~v~~~p~~ 153 (271)
....+. .++..++ +.+++ . ..... .....+.+|...+.++. +
T Consensus 203 ~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~-- 278 (464)
T 3v7d_B 203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVS--G-- 278 (464)
T ss_dssp SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEE--E--
T ss_pred CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEc--C--
Confidence 222233 2345555 66777 1 11100 02567788999998884 4
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 154 GLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 154 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
++.++++|+.|+.|++||+++++. ...+.+|...|.+++|+|++.++++++.|+.|++||++++ +++..+.+|
T Consensus 279 --~~~~l~~~~~d~~i~vwd~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~~~~~~~h 351 (464)
T 3v7d_B 279 --HGNIVVSGSYDNTLIVWDVAQMKC--LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---ELMYTLQGH 351 (464)
T ss_dssp --ETTEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---EEEEEECCC
T ss_pred --CCCEEEEEeCCCeEEEEECCCCcE--EEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cEEEEEeCC
Confidence 478999999999999999998876 6778899999999999999999999999999999999877 677777776
Q ss_pred chhh
Q psy13856 234 SEQR 237 (271)
Q Consensus 234 ~~~~ 237 (271)
....
T Consensus 352 ~~~v 355 (464)
T 3v7d_B 352 TALV 355 (464)
T ss_dssp SSCE
T ss_pred CCcE
Confidence 6543
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-22 Score=166.92 Aligned_cols=181 Identities=8% Similarity=0.018 Sum_probs=136.8
Q ss_pred CCCCCEEEEccCCCeEEeccc------eeeeccccccccccceEEE----EcCCCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 32 LRIGHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGA----LSPKLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 32 ~~~g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~----~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
.+++.+|++|+.|+.|++||+ ...+..|.+.....+.+++ |+|+++++++++.|+.|++||. +.++.
T Consensus 126 s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~---~~~~~ 202 (357)
T 3i2n_A 126 GEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDL---RNMAL 202 (357)
T ss_dssp C-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEET---TTTEE
T ss_pred CCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEEC---ccCce
Confidence 578999999999999999998 4455555542222388888 7889999999999999999998 65555
Q ss_pred eeccc----eeeEEEee---ccceee-----eEEEE--eeCCceEEe-----EEecCCCcceEEEEEccCCCCCCc-EEE
Q psy13856 102 LQPKY----FKLTVYST---KLTRIL-----ILVRI--CGGDKWIEE-----TKLENHSDWVRDVAWAPSWGLSKC-MIA 161 (271)
Q Consensus 102 ~~~~~----~~~~~~~~---~~~~l~-----~~v~i--~~~~~~~~~-----~~~~~h~~~v~~v~~~p~~~~~~~-~l~ 161 (271)
..... .....++. ++..++ +.+++ ...+ ... ..+.+|...|.+++|+| ++. +|+
T Consensus 203 ~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~l~ 276 (357)
T 3i2n_A 203 RWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ--HPTKGFASVSEKAHKSTVWQVRHLP----QNRELFL 276 (357)
T ss_dssp EEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE--ETTTEEEEEEEECCSSCEEEEEEET----TEEEEEE
T ss_pred eeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC--CcccceeeeccCCCcCCEEEEEECC----CCCcEEE
Confidence 44332 23445555 566666 67777 2222 222 23458999999999999 566 899
Q ss_pred EEeCCCeEEEEEcCCCcee-----------------eeeeeccCCCCeEEEEEecCCCEEE-EEECCCcEEEEEeCCC
Q psy13856 162 SCSQDRKVIIWTSNDYVTW-----------------TPFIMNTFDDVVWNVSWSLTGDILT-VSCGDNSVSLWKENTD 221 (271)
Q Consensus 162 s~~~dg~i~iwd~~~~~~~-----------------~~~~~~~h~~~v~~v~~~~~g~~l~-s~s~D~~v~iw~~~~~ 221 (271)
+|+.||.|++||++.+... ....+.+|...|.+++|+|++.+|+ +++.|+.|++|++...
T Consensus 277 ~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 277 TAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp EEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred EEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 9999999999999864321 2556778999999999999999998 8999999999999754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.90 E-value=4.7e-22 Score=167.08 Aligned_cols=189 Identities=14% Similarity=0.080 Sum_probs=146.8
Q ss_pred cCCCCC----C---CEEEEccCCCeEEeccc----------eeeeccc-----cccccccceEEEEc----CCCCe-EEE
Q psy13856 29 ESPLRI----G---HTLISCDTQAHIGIRST----------ISLLQGS-----VYLRRESNKAGALS----PKLNR-SAT 81 (271)
Q Consensus 29 ~~~~~~----g---~~l~s~s~d~~i~lwd~----------~~~~~~h-----~~~~~~~i~~~~~s----~~~~~-l~s 81 (271)
....++ + .+|++++.|+.|++||+ ...+..| ... |.+++|+ |+++. |++
T Consensus 68 ~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~~~~l~~ 143 (397)
T 1sq9_A 68 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHS----FWALKWGASNDRLLSHRLVA 143 (397)
T ss_dssp EEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSC----EEEEEEECCC----CEEEEE
T ss_pred EEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCc----EEEEEEeeccCCCCceEEEE
Confidence 334467 8 99999999999999998 2445667 466 9999999 99999 999
Q ss_pred EeCCCcEEEEEeec------CCCCc-----eee---------ccceeeEEEeeccceee-----eEEEEeeCCceEEeEE
Q psy13856 82 SSFHEAAKHLGTVQ------SSSPA-----CLQ---------PKYFKLTVYSTKLTRIL-----ILVRICGGDKWIEETK 136 (271)
Q Consensus 82 ~s~d~~i~~~d~~~------~~~~~-----~~~---------~~~~~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~ 136 (271)
++.|+.|++||... ..... .+. ........++.++ .++ +.+++.+....+.+..
T Consensus 144 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~ 222 (397)
T 1sq9_A 144 TDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYN 222 (397)
T ss_dssp EETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEE
T ss_pred EeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEE
Confidence 99999999999953 22222 221 1122445566667 666 7888832222267788
Q ss_pred ecC---C---CcceEEEEEccCCCCCCcEEEEEeCC---CeEEEEEcCCCceeeeeeecc-------------CCCCeEE
Q psy13856 137 LEN---H---SDWVRDVAWAPSWGLSKCMIASCSQD---RKVIIWTSNDYVTWTPFIMNT-------------FDDVVWN 194 (271)
Q Consensus 137 ~~~---h---~~~v~~v~~~p~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~-------------h~~~v~~ 194 (271)
+.. | ...|.+++|+| ++.+|++++.| +.|++||+++++. ...+.. |...|.+
T Consensus 223 ~~~~~~h~~~~~~i~~i~~~~----~~~~l~~~~~d~~~g~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~ 296 (397)
T 1sq9_A 223 FESQHSMINNSNSIRSVKFSP----QGSLLAIAHDSNSFGCITLYETEFGER--IGSLSVPTHSSQASLGEFAHSSWVMS 296 (397)
T ss_dssp EECCC---CCCCCEEEEEECS----STTEEEEEEEETTEEEEEEEETTTCCE--EEEECBC--------CCBSBSSCEEE
T ss_pred EeccccccccCCccceEEECC----CCCEEEEEecCCCCceEEEEECCCCcc--cceeccCcccccccccccccCCcEEE
Confidence 888 8 99999999999 69999999999 9999999998876 666777 9999999
Q ss_pred EEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEec
Q psy13856 195 VSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 195 v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
++|+|++.+|++++.|+.|++||+++. +.+..+.
T Consensus 297 ~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~ 330 (397)
T 1sq9_A 297 LSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLN 330 (397)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEE
T ss_pred EEECCCCCEEEEEeCCCeEEEEEcCCC---ceeEEEe
Confidence 999999999999999999999999877 6677776
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=171.08 Aligned_cols=157 Identities=18% Similarity=0.280 Sum_probs=130.4
Q ss_pred EEEEccCCCeEEeccc---------eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCceeeccc
Q psy13856 37 TLISCDTQAHIGIRST---------ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPACLQPKY 106 (271)
Q Consensus 37 ~l~s~s~d~~i~lwd~---------~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~ 106 (271)
++++++.||.|++|++ +..+.+|... |.+++|+| ++++|++|+.|+.|++|++ .++.....
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~----V~~~~~~p~~~~~l~s~s~dg~v~vw~~---~~~~~~~~-- 119 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAP----VLDIAWCPHNDNVIASGSEDCTVMVWEI---PDGGLVLP-- 119 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSC----EEEEEECTTCTTEEEEEETTSEEEEEEC---CTTCCSSC--
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceEecCCCC----EEEEEeCCCCCCEEEEEeCCCeEEEEEc---cCCCCccc--
Confidence 4556899999999997 3456789999 99999999 9999999999999999998 33322110
Q ss_pred eeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCC-cEEEEEeCCCeEEEEEcCCCceeeeeee
Q psy13856 107 FKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSK-CMIASCSQDRKVIIWTSNDYVTWTPFIM 185 (271)
Q Consensus 107 ~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 185 (271)
.. ..+..+.+|...|.+++|+| ++ .+|++|+.|+.|++||+++++. ...+
T Consensus 120 ---------------------~~--~~~~~~~~h~~~v~~~~~~p----~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~ 170 (402)
T 2aq5_A 120 ---------------------LR--EPVITLEGHTKRVGIVAWHP----TAQNVLLSAGCDNVILVWDVGTGAA--VLTL 170 (402)
T ss_dssp ---------------------BC--SCSEEEECCSSCEEEEEECS----SBTTEEEEEETTSCEEEEETTTTEE--EEEE
T ss_pred ---------------------cC--CceEEecCCCCeEEEEEECc----CCCCEEEEEcCCCEEEEEECCCCCc--cEEE
Confidence 00 34566778999999999999 45 7999999999999999998876 5666
Q ss_pred --ccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEe-cccc
Q psy13856 186 --NTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM-GKTS 234 (271)
Q Consensus 186 --~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~~~~ 234 (271)
..|...|.+++|+|++.+|++++.|+.|++||++++ +.+..+ ..|.
T Consensus 171 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~ 219 (402)
T 2aq5_A 171 GPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKG---TVVAEKDRPHE 219 (402)
T ss_dssp CTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTT---EEEEEEECSSC
T ss_pred ecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCC---ceeeeeccCCC
Confidence 789999999999999999999999999999999876 566666 4444
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=166.23 Aligned_cols=186 Identities=11% Similarity=0.050 Sum_probs=136.5
Q ss_pred cccCCCCC---CCEEEEccCCCeEEeccc------eeeeccccccccccceEEE------EcCCCCeEEEEeCCCcEEEE
Q psy13856 27 YTESPLRI---GHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGA------LSPKLNRSATSSFHEAAKHL 91 (271)
Q Consensus 27 ~~~~~~~~---g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~------~s~~~~~l~s~s~d~~i~~~ 91 (271)
......|+ +.+|++|+.|+.|++||+ +..+.+|... |.+++ |+|++++|++++.|+.|++|
T Consensus 69 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vw 144 (357)
T 3i2n_A 69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEI----INAIDGIGGLGIGEGAPEIVTGSRDGTVKVW 144 (357)
T ss_dssp EEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSC----EEEEEEESGGGCC-CCCEEEEEETTSCEEEE
T ss_pred EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccc----eEEEeeccccccCCCccEEEEEeCCCeEEEE
Confidence 33344455 799999999999999998 5667889998 99995 46899999999999999999
Q ss_pred EeecCCCCc-eeecc---------ceeeEE----Eeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccC
Q psy13856 92 GTVQSSSPA-CLQPK---------YFKLTV----YSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPS 152 (271)
Q Consensus 92 d~~~~~~~~-~~~~~---------~~~~~~----~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~ 152 (271)
|.. .+. ..... ...... ++.++..++ +.+++.+....+. .....|...|.+++|+|.
T Consensus 145 d~~---~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~~~~v~~~~~~~~ 220 (357)
T 3i2n_A 145 DPR---QKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMAL-RWETNIKNGVCSLEFDRK 220 (357)
T ss_dssp CTT---SCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEE-EEEEECSSCEEEEEESCS
T ss_pred eCC---CCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCce-eeecCCCCceEEEEcCCC
Confidence 984 333 22221 111222 335566666 7888822221133 344668899999999981
Q ss_pred CCCCCcEEEEEeCCCeEEEEEcCCCcee---eeeeeccCCCCeEEEEEecCCC-EEEEEECCCcEEEEEeCCC
Q psy13856 153 WGLSKCMIASCSQDRKVIIWTSNDYVTW---TPFIMNTFDDVVWNVSWSLTGD-ILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 153 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~v~iw~~~~~ 221 (271)
. .++.++++++.||.|++||+++.... ....+.+|...|++++|+|++. +|++++.||.|++||++..
T Consensus 221 ~-~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 292 (357)
T 3i2n_A 221 D-ISMNKLVATSLEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYP 292 (357)
T ss_dssp S-SSCCEEEEEESTTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECC
T ss_pred C-CCCCEEEEECCCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCC
Confidence 0 01789999999999999999875431 1113348999999999999998 8999999999999999864
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-23 Score=185.94 Aligned_cols=192 Identities=31% Similarity=0.532 Sum_probs=147.8
Q ss_pred CCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCC--CCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPK--LNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
+..++++|++|+.||.|++||+ ...+.+|... |.+++|+|+ ++.+++|+.|+.|++||.........
T Consensus 63 ~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~----V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~ 138 (753)
T 3jro_A 63 HPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSAS----VNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSP 138 (753)
T ss_dssp CTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSC----EEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCC
T ss_pred CCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCC----eEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcce
Confidence 3334999999999999999998 4566788888 999999999 99999999999999999843222222
Q ss_pred eeccc----eeeEEEee-------------ccceee-----eEEEE--ee--CCceEEeEEecCCCcceEEEEEccCCCC
Q psy13856 102 LQPKY----FKLTVYST-------------KLTRIL-----ILVRI--CG--GDKWIEETKLENHSDWVRDVAWAPSWGL 155 (271)
Q Consensus 102 ~~~~~----~~~~~~~~-------------~~~~l~-----~~v~i--~~--~~~~~~~~~~~~h~~~v~~v~~~p~~~~ 155 (271)
..... .....+.+ ++..++ +.|++ .. .........+.+|...|.+++|+|
T Consensus 139 ~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp---- 214 (753)
T 3jro_A 139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSP---- 214 (753)
T ss_dssp EEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECC----
T ss_pred eEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEecc----
Confidence 22111 23334444 355666 77887 22 223366778899999999999999
Q ss_pred C---CcEEEEEeCCCeEEEEEcCCCcee---eeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEE
Q psy13856 156 S---KCMIASCSQDRKVIIWTSNDYVTW---TPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITE 229 (271)
Q Consensus 156 ~---~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~ 229 (271)
+ +.++++|+.||.|++||++++... .......|...|++++|+|+|.+|++++.||.|++|+++.++.|.....
T Consensus 215 ~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~~~~~~~~ 294 (753)
T 3jro_A 215 TVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKWEPAGE 294 (753)
T ss_dssp CCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSSCCBCCCC
T ss_pred CCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCCCcccccc
Confidence 5 899999999999999999886421 1233456888999999999999999999999999999987766655544
Q ss_pred e
Q psy13856 230 M 230 (271)
Q Consensus 230 ~ 230 (271)
.
T Consensus 295 ~ 295 (753)
T 3jro_A 295 V 295 (753)
T ss_dssp B
T ss_pred c
Confidence 3
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.90 E-value=4.1e-22 Score=168.34 Aligned_cols=176 Identities=16% Similarity=0.159 Sum_probs=141.1
Q ss_pred CCCEEEEccCCCeEEeccc------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc--
Q psy13856 34 IGHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-- 105 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-- 105 (271)
++..+++|+.|+.|++||+ ...+.+|... |.+++|+|++++|++|+.|+.|++||. .++......
T Consensus 185 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~s~~~d~~v~iwd~---~~~~~~~~~~~ 257 (401)
T 4aez_A 185 NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE----VCGLAWRSDGLQLASGGNDNVVQIWDA---RSSIPKFTKTN 257 (401)
T ss_dssp ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSC----EEEEEECTTSSEEEEEETTSCEEEEET---TCSSEEEEECC
T ss_pred CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCC----eeEEEEcCCCCEEEEEeCCCeEEEccC---CCCCccEEecC
Confidence 6789999999999999998 6677889999 999999999999999999999999998 555554433
Q ss_pred ---ceeeEEEeeccce-ee-------eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEE--EeCCCeEEEE
Q psy13856 106 ---YFKLTVYSTKLTR-IL-------ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIAS--CSQDRKVIIW 172 (271)
Q Consensus 106 ---~~~~~~~~~~~~~-l~-------~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s--~~~dg~i~iw 172 (271)
......++..+.. ++ +.+++.+.........+. +...|.+++|+| ++.++++ |+.||.|++|
T Consensus 258 ~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~----~~~~l~~~~g~~dg~i~v~ 332 (401)
T 4aez_A 258 HNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSP----HSKEIMSTHGFPDNNLSIW 332 (401)
T ss_dssp CSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECS----SSSEEEEEECTTTCEEEEE
T ss_pred CcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECC----CCCeEEEEeecCCCcEEEE
Confidence 2244455554433 33 567773322225666665 668899999999 6888888 4489999999
Q ss_pred EcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 173 TSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 173 d~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
|+.++.......+.+|...|.+++|+|++.+|++++.||.|++|++.++
T Consensus 333 ~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~ 381 (401)
T 4aez_A 333 SYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDG 381 (401)
T ss_dssp EEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC-
T ss_pred ecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence 9998765435557799999999999999999999999999999999876
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-22 Score=171.03 Aligned_cols=196 Identities=11% Similarity=0.057 Sum_probs=144.4
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc----------------eeeecccc------------ccccccceEEEEcCC
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST----------------ISLLQGSV------------YLRRESNKAGALSPK 75 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~----------------~~~~~~h~------------~~~~~~i~~~~~s~~ 75 (271)
-.+......|+|++||+|+.||.|++||+ ...+.+|. .. |.+++|+|+
T Consensus 29 ~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~----V~~l~~~~~ 104 (447)
T 3dw8_B 29 DIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEK----INKIRWLPQ 104 (447)
T ss_dssp GSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCC----CCEEEECCC
T ss_pred CcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCc----eEEEEEcCC
Confidence 34445555679999999999999999996 33567887 77 999999999
Q ss_pred C--CeEEEEeCCCcEEEEEeecCCCCcee---------------------------------------ec--c----cee
Q psy13856 76 L--NRSATSSFHEAAKHLGTVQSSSPACL---------------------------------------QP--K----YFK 108 (271)
Q Consensus 76 ~--~~l~s~s~d~~i~~~d~~~~~~~~~~---------------------------------------~~--~----~~~ 108 (271)
+ ..|++++.|++|++|+... +... .. . ...
T Consensus 105 ~~~~~l~s~s~d~~i~iw~~~~---~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~ 181 (447)
T 3dw8_B 105 KNAAQFLLSTNDKTIKLWKISE---RDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHIN 181 (447)
T ss_dssp CSSSEEEEEECSSCEEEEEEEE---EEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCC
T ss_pred CCcceEEEeCCCCeEEEEeccc---ccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceE
Confidence 8 7999999999999999842 1110 00 0 123
Q ss_pred eEEEeeccceee----eEEEEeeCC-ceEEeE-------EecCCCcceEEEEEccCCCCCC-cEEEEEeCCCeEEEEEcC
Q psy13856 109 LTVYSTKLTRIL----ILVRICGGD-KWIEET-------KLENHSDWVRDVAWAPSWGLSK-CMIASCSQDRKVIIWTSN 175 (271)
Q Consensus 109 ~~~~~~~~~~l~----~~v~i~~~~-~~~~~~-------~~~~h~~~v~~v~~~p~~~~~~-~~l~s~~~dg~i~iwd~~ 175 (271)
...++.+++.++ +.|++++.. .-.... .+.+|...|.+++|+| ++ .+|++|+.||.|++||++
T Consensus 182 ~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p----~~~~~l~s~~~dg~i~iwd~~ 257 (447)
T 3dw8_B 182 SISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP----NSCNTFVYSSSKGTIRLCDMR 257 (447)
T ss_dssp EEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS----SCTTEEEEEETTSCEEEEETT
T ss_pred EEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC----CCCcEEEEEeCCCeEEEEECc
Confidence 445556677776 778883222 113333 3568999999999999 56 999999999999999999
Q ss_pred CCceee--eeeeccCCC------------CeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 176 DYVTWT--PFIMNTFDD------------VVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 176 ~~~~~~--~~~~~~h~~------------~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
++.... ...+..|.. .|.+++|+|+|.+|++++. +.|++||++..+ +++..+..|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~--~~~~~~~~~ 326 (447)
T 3dw8_B 258 ASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMEN--RPVETYQVH 326 (447)
T ss_dssp TCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCS--SCSCCEESC
T ss_pred CCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCc--cccceeecc
Confidence 876310 245666765 8999999999999999998 999999998622 334444444
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-22 Score=168.06 Aligned_cols=185 Identities=17% Similarity=0.173 Sum_probs=143.1
Q ss_pred cceecccCCCC-CCCEEEEccCCCeEEeccc-----eeee-------------ccccccccccceEEEEcC-CCCeEEEE
Q psy13856 23 EIETYTESPLR-IGHTLISCDTQAHIGIRST-----ISLL-------------QGSVYLRRESNKAGALSP-KLNRSATS 82 (271)
Q Consensus 23 ~~~~~~~~~~~-~g~~l~s~s~d~~i~lwd~-----~~~~-------------~~h~~~~~~~i~~~~~s~-~~~~l~s~ 82 (271)
.-.+......| ++++|++|+.||.|++||+ ...+ .+|... |.+++|+| ++++|+++
T Consensus 43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~s~ 118 (408)
T 4a11_B 43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYS----VETVQWYPHDTGMFTSS 118 (408)
T ss_dssp SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSC----EEEEEECTTCTTCEEEE
T ss_pred CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCc----EEEEEEccCCCcEEEEE
Confidence 34445555667 8999999999999999998 1222 248888 99999999 77899999
Q ss_pred eCCCcEEEEEeecCCCCceeeccce----eeEEEeec---cceee-----eEEEE--eeCCceEEeEEecCCCcceEEEE
Q psy13856 83 SFHEAAKHLGTVQSSSPACLQPKYF----KLTVYSTK---LTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVA 148 (271)
Q Consensus 83 s~d~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~~---~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~ 148 (271)
+.|+.|++||. .++........ ....+... +..++ +.+++ ...+ .....+.+|...|.+++
T Consensus 119 ~~d~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~~v~~~~ 193 (408)
T 4a11_B 119 SFDKTLKVWDT---NTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSG--SCSHILQGHRQEILAVS 193 (408)
T ss_dssp ETTSEEEEEET---TTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSS--CCCEEECCCCSCEEEEE
T ss_pred eCCCeEEEeeC---CCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCc--ceeeeecCCCCcEEEEE
Confidence 99999999998 66666554422 22223332 22444 67777 2333 66778889999999999
Q ss_pred EccCCCCCCc-EEEEEeCCCeEEEEEcCCCceeeeeee---------------ccCCCCeEEEEEecCCCEEEEEECCCc
Q psy13856 149 WAPSWGLSKC-MIASCSQDRKVIIWTSNDYVTWTPFIM---------------NTFDDVVWNVSWSLTGDILTVSCGDNS 212 (271)
Q Consensus 149 ~~p~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~---------------~~h~~~v~~v~~~~~g~~l~s~s~D~~ 212 (271)
|+|. +. ++++|+.||.|++||++..... ...+ ..|...|.+++|+|++.+|++++.|+.
T Consensus 194 ~~~~----~~~ll~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~ 268 (408)
T 4a11_B 194 WSPR----YDYILATASADSRVKLWDVRRASGC-LITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNR 268 (408)
T ss_dssp ECSS----CTTEEEEEETTSCEEEEETTCSSCC-SEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred ECCC----CCcEEEEEcCCCcEEEEECCCCCcc-cccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCe
Confidence 9994 56 6999999999999999876421 2222 578899999999999999999999999
Q ss_pred EEEEEeCCC
Q psy13856 213 VSLWKENTD 221 (271)
Q Consensus 213 v~iw~~~~~ 221 (271)
|++||+.++
T Consensus 269 i~vwd~~~~ 277 (408)
T 4a11_B 269 MRLWNSSNG 277 (408)
T ss_dssp EEEEETTTC
T ss_pred EEEEECCCC
Confidence 999999865
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-23 Score=181.60 Aligned_cols=178 Identities=10% Similarity=-0.020 Sum_probs=122.7
Q ss_pred CCCCEEEEccCCCeEEeccc----e-----eeeccccccccccceEEEEcCC------CCeEEEEeCCCcEEEEEeecCC
Q psy13856 33 RIGHTLISCDTQAHIGIRST----I-----SLLQGSVYLRRESNKAGALSPK------LNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~----~-----~~~~~h~~~~~~~i~~~~~s~~------~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
|+++.+++++.|++|+||++ . ..+..|.+. |.+++|+|+ +.+|++++.|++|++||+..+.
T Consensus 171 ~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~----V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~ 246 (524)
T 2j04_B 171 EHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGE----VWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNA 246 (524)
T ss_dssp -----------CEEEEEEEEETTTCCEEEEEEEEECCCS----EEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCS
T ss_pred hhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCc----EEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCc
Confidence 56677888999999999998 1 235667788 999999996 5799999999999999984221
Q ss_pred CCc--e------eecc-----ceeeEEEeeccceee-----eEEEEeeCC-ceEEeEEecCCCcceEEE--EEccCCCCC
Q psy13856 98 SPA--C------LQPK-----YFKLTVYSTKLTRIL-----ILVRICGGD-KWIEETKLENHSDWVRDV--AWAPSWGLS 156 (271)
Q Consensus 98 ~~~--~------~~~~-----~~~~~~~~~~~~~l~-----~~v~i~~~~-~~~~~~~~~~h~~~v~~v--~~~p~~~~~ 156 (271)
... . .... ......+.. ...++ +.|++++.. ...+...+.+|...|.+| .|+| +
T Consensus 247 ~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~-~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~----~ 321 (524)
T 2j04_B 247 TDVHVFKMCEKPSLTLSLADSLITTFDFLS-PTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSD----F 321 (524)
T ss_dssp SSSSEEECCCSCSEEECCTTTCEEEEEESS-SSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCT----T
T ss_pred cccccceeecCceEEEEcCCCCEEEEEecC-CCeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCC----C
Confidence 110 0 0011 112233333 34555 889982221 113445678999999999 5667 5
Q ss_pred C-cEEEEEeCCCeEEEEEcCCCceeeeeeeccCCC--CeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 157 K-CMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDD--VVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 157 ~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+ .+|+||+.|++|++||++++.+ ...+.+|.. .|++++|+|++..+++++.|++|++||++..
T Consensus 322 g~~~laS~S~D~tvklWD~~~~~~--~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~ 387 (524)
T 2j04_B 322 EDTVVSTVAVDGYFYIFNPKDIAT--TKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA 387 (524)
T ss_dssp SCCEEEEEETTSEEEEECGGGHHH--HCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT
T ss_pred CCeEEEEeccCCeEEEEECCCCCc--ccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc
Confidence 6 8999999999999999998765 444555543 5889999999999999999999999999876
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=2e-21 Score=166.85 Aligned_cols=179 Identities=14% Similarity=0.114 Sum_probs=141.9
Q ss_pred CCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEc--CCCCeEEEEeCCCcEEEEEeecCCCCce-
Q psy13856 30 SPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALS--PKLNRSATSSFHEAAKHLGTVQSSSPAC- 101 (271)
Q Consensus 30 ~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s--~~~~~l~s~s~d~~i~~~d~~~~~~~~~- 101 (271)
...+++ .|++|+.||+|++||+ +..+.+|... |.+++|+ ++++++++|+.|+.|++||.........
T Consensus 169 ~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~----v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~ 243 (464)
T 3v7d_B 169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNST----VRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDH 243 (464)
T ss_dssp EECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC---
T ss_pred EEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCc----cEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccc
Confidence 334555 9999999999999998 6778899999 9999998 5778999999999999999842221110
Q ss_pred -------------------eecc-ce--eeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCC
Q psy13856 102 -------------------LQPK-YF--KLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWG 154 (271)
Q Consensus 102 -------------------~~~~-~~--~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 154 (271)
.... .+ .....+.++..++ +.|++.+....+.+..+.+|...|.+++|+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~--- 320 (464)
T 3v7d_B 244 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH--- 320 (464)
T ss_dssp ---CCSSEEESCGGGCTTEEEEECCCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET---
T ss_pred cccCCcceEeeccCCCeEEEEEccCccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC---
Confidence 1111 11 2222334456665 7788833222378888999999999999999
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 155 LSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 155 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
++.++++|+.||.|++||+++++. ...+.+|...|.+++|+ +.+|++++.||.|++||+++.
T Consensus 321 -~~~~l~sg~~dg~i~vwd~~~~~~--~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~ 382 (464)
T 3v7d_B 321 -ERKRCISASMDTTIRIWDLENGEL--MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDY 382 (464)
T ss_dssp -TTTEEEEEETTSCEEEEETTTTEE--EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC
T ss_pred -CCCEEEEEeCCCcEEEEECCCCcE--EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCC
Confidence 699999999999999999999876 77888999999999997 579999999999999999875
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.6e-21 Score=164.61 Aligned_cols=195 Identities=11% Similarity=0.072 Sum_probs=149.2
Q ss_pred ecccCCCC-CCCEEEEccCCCeEEeccc------------eeeeccccccccccceEEEEcCCC-CeEEEEeCCCcEEEE
Q psy13856 26 TYTESPLR-IGHTLISCDTQAHIGIRST------------ISLLQGSVYLRRESNKAGALSPKL-NRSATSSFHEAAKHL 91 (271)
Q Consensus 26 ~~~~~~~~-~g~~l~s~s~d~~i~lwd~------------~~~~~~h~~~~~~~i~~~~~s~~~-~~l~s~s~d~~i~~~ 91 (271)
+......| ++.+|++|+.||.|++||+ +..+.+|... |.+++|+|++ ++|++++.|+.|++|
T Consensus 84 V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~----v~~~~~~p~~~~~l~s~~~dg~i~iw 159 (402)
T 2aq5_A 84 VLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKR----VGIVAWHPTAQNVLLSAGCDNVILVW 159 (402)
T ss_dssp EEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSC----EEEEEECSSBTTEEEEEETTSCEEEE
T ss_pred EEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCe----EEEEEECcCCCCEEEEEcCCCEEEEE
Confidence 34444556 8899999999999999998 3456789998 9999999998 699999999999999
Q ss_pred EeecCCCCceeecc---ce----eeEEEeeccceee-----eEEEEeeCCceEEeEEe-cCCCcc-eEEEEEccCCCCCC
Q psy13856 92 GTVQSSSPACLQPK---YF----KLTVYSTKLTRIL-----ILVRICGGDKWIEETKL-ENHSDW-VRDVAWAPSWGLSK 157 (271)
Q Consensus 92 d~~~~~~~~~~~~~---~~----~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~-~~h~~~-v~~v~~~p~~~~~~ 157 (271)
|+ .++++.... .+ ....++.++..++ +.+++.+......+..+ .+|.+. +.++.|+| ++
T Consensus 160 d~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 232 (402)
T 2aq5_A 160 DV---GTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVS----EG 232 (402)
T ss_dssp ET---TTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECS----TT
T ss_pred EC---CCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcC----CC
Confidence 98 666655443 12 3455666677777 78888332222677777 788776 89999999 68
Q ss_pred cEEEEE---eCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEE-ECCCcEEEEEeCCCCc-eeEEEEec
Q psy13856 158 CMIASC---SQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVS-CGDNSVSLWKENTDGA-WQCITEMG 231 (271)
Q Consensus 158 ~~l~s~---~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~-s~D~~v~iw~~~~~~~-~~~~~~~~ 231 (271)
.++++| +.|+.|++||+++...........|...+.+++|+|++.+|+++ +.|+.|++|++..+.. ...+....
T Consensus 233 ~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~ 311 (402)
T 2aq5_A 233 KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS 311 (402)
T ss_dssp EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC
T ss_pred cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc
Confidence 999999 78999999999886542122333577889999999999999755 4799999999987753 34444443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-22 Score=181.57 Aligned_cols=195 Identities=15% Similarity=0.212 Sum_probs=158.3
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
+......|+|.+|++|+.||.|++||+ +..+.+|... |.+++|+|++++|++++.|+.|++|+. .+++
T Consensus 16 v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~i~vw~~---~~~~ 88 (814)
T 3mkq_A 16 VKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETP----VRAGKFIARKNWIIVGSDDFRIRVFNY---NTGE 88 (814)
T ss_dssp EEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC----EEEEEEEGGGTEEEEEETTSEEEEEET---TTCC
T ss_pred eEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCc----EEEEEEeCCCCEEEEEeCCCeEEEEEC---CCCc
Confidence 444455679999999999999999998 6778899999 999999999999999999999999998 6666
Q ss_pred eeecc-----ceeeEEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeE
Q psy13856 101 CLQPK-----YFKLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 169 (271)
Q Consensus 101 ~~~~~-----~~~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i 169 (271)
..... ......++.++..++ +.+++ ...........+.+|...|.+++|+|. ++.+|++++.||.|
T Consensus 89 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~---~~~~l~~~~~dg~v 165 (814)
T 3mkq_A 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPK---DPSTFASGCLDRTV 165 (814)
T ss_dssp EEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETT---EEEEEEEEETTSEE
T ss_pred EEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcC---CCCEEEEEeCCCeE
Confidence 65544 224556667777777 78888 322223677888899999999999995 58899999999999
Q ss_pred EEEEcCCCceeeeeeec-cCCCCeEEEEEec--CCCEEEEEECCCcEEEEEeCCCCceeEEEEecccch
Q psy13856 170 IIWTSNDYVTWTPFIMN-TFDDVVWNVSWSL--TGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSE 235 (271)
Q Consensus 170 ~iwd~~~~~~~~~~~~~-~h~~~v~~v~~~~--~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 235 (271)
++||+..+.. ...+. .+...+.+++|+| ++.+|++++.|+.|++||+.++ +.+..+.+|..
T Consensus 166 ~vwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~ 229 (814)
T 3mkq_A 166 KVWSLGQSTP--NFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMS 229 (814)
T ss_dssp EEEETTCSSC--SEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---EEEEEEECCSS
T ss_pred EEEECCCCcc--eeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEcCCCC
Confidence 9999987765 34444 4458999999999 8999999999999999999876 55666655543
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.4e-22 Score=162.53 Aligned_cols=191 Identities=13% Similarity=0.017 Sum_probs=144.2
Q ss_pred cccCCCCCCC-EEEEccCCCeEEeccc-----eeeecc--ccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 27 YTESPLRIGH-TLISCDTQAHIGIRST-----ISLLQG--SVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 27 ~~~~~~~~g~-~l~s~s~d~~i~lwd~-----~~~~~~--h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
......+++. +|++|+.||.|++||+ ...+.+ |... |.+++|+| ++.+++++.|+.|++||......
T Consensus 60 ~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~~~~~~~~~~~~~~----v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~ 134 (342)
T 1yfq_A 60 LCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLG----ICRICKYG-DDKLIAASWDGLIEVIDPRNYGD 134 (342)
T ss_dssp EEEEEEESSSEEEEEEETTSCEEEECSSSSSSEEECBSCCCCSC----EEEEEEET-TTEEEEEETTSEEEEECHHHHTT
T ss_pred EEEEECCCCCcEEEEEcCCCeEEEEEeccCCceEeccccCCCCc----eEEEEeCC-CCEEEEEcCCCeEEEEccccccc
Confidence 3334456899 9999999999999997 556777 9888 99999999 99999999999999999842000
Q ss_pred ------Cceeeccce----eeEEEeeccceee-----eEEEE--eeC-CceEEeEEecCCCcceEEEEEcc-CCCCCCcE
Q psy13856 99 ------PACLQPKYF----KLTVYSTKLTRIL-----ILVRI--CGG-DKWIEETKLENHSDWVRDVAWAP-SWGLSKCM 159 (271)
Q Consensus 99 ------~~~~~~~~~----~~~~~~~~~~~l~-----~~v~i--~~~-~~~~~~~~~~~h~~~v~~v~~~p-~~~~~~~~ 159 (271)
++++....+ ....+..+. ++ +.+++ ... ...........|...+.+++|+| . +.+
T Consensus 135 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~----~~~ 208 (342)
T 1yfq_A 135 GVIAVKNLNSNNTKVKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKE----QEG 208 (342)
T ss_dssp BCEEEEESCSSSSSSCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGG----GCE
T ss_pred ccccccCCeeeEEeeCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCC----CCE
Confidence 333322222 222232223 43 67887 222 21123344556888999999999 5 789
Q ss_pred EEEEeCCCeEEEEEcCCC------ceeeeeeeccCCC---------CeEEEEEecCCCEEEEEECCCcEEEEEeCCCCce
Q psy13856 160 IASCSQDRKVIIWTSNDY------VTWTPFIMNTFDD---------VVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAW 224 (271)
Q Consensus 160 l~s~~~dg~i~iwd~~~~------~~~~~~~~~~h~~---------~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~ 224 (271)
+++++.||.+++|+++.. .. ...+..|.. .|.+++|+|++.+|++++.||.|++||+.++
T Consensus 209 l~~~~~dg~i~i~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~--- 283 (342)
T 1yfq_A 209 YACSSIDGRVAVEFFDDQGDDYNSSK--RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR--- 283 (342)
T ss_dssp EEEEETTSEEEEEECCTTCCSTTCTT--CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---
T ss_pred EEEEecCCcEEEEEEcCCCccccccc--ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH---
Confidence 999999999999999876 33 556666654 9999999999999999999999999999877
Q ss_pred eEEEEeccc
Q psy13856 225 QCITEMGKT 233 (271)
Q Consensus 225 ~~~~~~~~~ 233 (271)
+.+..+..+
T Consensus 284 ~~~~~~~~~ 292 (342)
T 1yfq_A 284 KKIKNFAKF 292 (342)
T ss_dssp EEEEECCCC
T ss_pred hHhhhhhcc
Confidence 667777776
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-21 Score=164.96 Aligned_cols=175 Identities=14% Similarity=0.138 Sum_probs=138.2
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeecc-ccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-c
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQG-SVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-Y 106 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~-h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~ 106 (271)
++..+++++.|+.|++||. ...+.. |... |.+++|+|++++|++|+.|+.|++||. .+++.+... .
T Consensus 102 s~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~----v~~v~~s~~~~~l~~~~~dg~i~iwd~---~~~~~~~~~~~ 174 (401)
T 4aez_A 102 SNLNVVAVALERNVYVWNADSGSVSALAETDESTY----VASVKWSHDGSFLSVGLGNGLVDIYDV---ESQTKLRTMAG 174 (401)
T ss_dssp CTTSEEEEEETTEEEEEETTTCCEEEEEECCTTCC----EEEEEECTTSSEEEEEETTSCEEEEET---TTCCEEEEECC
T ss_pred cCCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCC----EEEEEECCCCCEEEEECCCCeEEEEEC---cCCeEEEEecC
Confidence 4566888999999999998 333333 7777 999999999999999999999999998 666655544 2
Q ss_pred e--eeEEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc
Q psy13856 107 F--KLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV 178 (271)
Q Consensus 107 ~--~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 178 (271)
+ .......+++.++ +.+++ ...........+.+|...|.+++|+| ++.+|++|+.|+.|++||+++..
T Consensus 175 ~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~s~~~d~~v~iwd~~~~~ 250 (401)
T 4aez_A 175 HQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRS----DGLQLASGGNDNVVQIWDARSSI 250 (401)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTCSS
T ss_pred CCCceEEEEECCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcC----CCCEEEEEeCCCeEEEccCCCCC
Confidence 2 2222222456665 78888 22211256778889999999999999 69999999999999999999877
Q ss_pred eeeeeeeccCCCCeEEEEEecCC-CEEEEEE--CCCcEEEEEeCCC
Q psy13856 179 TWTPFIMNTFDDVVWNVSWSLTG-DILTVSC--GDNSVSLWKENTD 221 (271)
Q Consensus 179 ~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s--~D~~v~iw~~~~~ 221 (271)
. ...+..|...|.+++|+|++ .++++++ .|+.|++||+.++
T Consensus 251 ~--~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~ 294 (401)
T 4aez_A 251 P--KFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG 294 (401)
T ss_dssp E--EEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC
T ss_pred c--cEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC
Confidence 6 66778899999999999976 5566655 6999999999876
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-22 Score=167.76 Aligned_cols=185 Identities=10% Similarity=-0.010 Sum_probs=137.4
Q ss_pred EccCCCeEEeccc------eee--------eccccccccccceEEEEcCCCCeEEEE--eCCCcEEEEEeecCCCCceee
Q psy13856 40 SCDTQAHIGIRST------ISL--------LQGSVYLRRESNKAGALSPKLNRSATS--SFHEAAKHLGTVQSSSPACLQ 103 (271)
Q Consensus 40 s~s~d~~i~lwd~------~~~--------~~~h~~~~~~~i~~~~~s~~~~~l~s~--s~d~~i~~~d~~~~~~~~~~~ 103 (271)
+++.|+++|+|++ +.. ...+... +.+++|||||++++++ +.|++|++||. .++.+..
T Consensus 99 s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~fSpDg~~la~as~~~d~~i~iwd~---~~~~~~~ 171 (365)
T 4h5i_A 99 QGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDY----TKLVYISREGTVAAIASSKVPAIMRIIDP---SDLTEKF 171 (365)
T ss_dssp HTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCC----EEEEEECTTSSCEEEEESCSSCEEEEEET---TTTEEEE
T ss_pred EecCCCcEEEEEecCCCceEEEeeeeceeecCCcccC----EEEEEEcCCCCEEEEEECCCCCEEEEeEC---CCCcEEE
Confidence 4466888999987 111 1123334 7899999999987654 47899999998 6666665
Q ss_pred ccc----eeeEEEeeccceee----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCC----eE
Q psy13856 104 PKY----FKLTVYSTKLTRIL----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDR----KV 169 (271)
Q Consensus 104 ~~~----~~~~~~~~~~~~l~----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg----~i 169 (271)
... .....+++++++++ +.+.+ ...+.........+|...|.+++|+| ++.++++++.|+ .+
T Consensus 172 ~~~~~~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fsp----dg~~l~~~s~d~~~~~~i 247 (365)
T 4h5i_A 172 EIETRGEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLSKINFIA----DDTVLIAASLKKGKGIVL 247 (365)
T ss_dssp EEECSSCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEE----TTEEEEEEEESSSCCEEE
T ss_pred EeCCCCceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEEEEEEcC----CCCEEEEEecCCcceeEE
Confidence 542 24566778888887 33444 33443233345567889999999999 799999999887 68
Q ss_pred EEEEcCCCcee--eeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEe-cccchhhh
Q psy13856 170 IIWTSNDYVTW--TPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM-GKTSEQRA 238 (271)
Q Consensus 170 ~iwd~~~~~~~--~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~~~~~~~~ 238 (271)
++|+....... ....+.+|...|++++|+|+|++||+|+.|++|+|||++++ +++.++ ++|.....
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~---~~~~~~~~gH~~~V~ 316 (365)
T 4h5i_A 248 TKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL---SMSKIFKQAHSFAIT 316 (365)
T ss_dssp EEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEETTSSSSCEE
T ss_pred eecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC---cEEEEecCcccCCEE
Confidence 89998766432 13456789999999999999999999999999999999877 777775 66765533
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.6e-22 Score=179.44 Aligned_cols=173 Identities=21% Similarity=0.232 Sum_probs=144.8
Q ss_pred cceecccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCC--CCeEEEEeCCCcEEEEEe
Q psy13856 23 EIETYTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPK--LNRSATSSFHEAAKHLGT 93 (271)
Q Consensus 23 ~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~--~~~l~s~s~d~~i~~~d~ 93 (271)
...+......|+|++|++|+.||.|++||+ ...+.+|.+. |++++|+|+ +++|++|+.||.|++||.
T Consensus 9 ~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~----V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~ 84 (753)
T 3jro_A 9 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGP----VWRVDWAHPKFGTILASCSYDGKVLIWKE 84 (753)
T ss_dssp CCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSC----EEEEEECCTTSCSEEEEEETTSCEEEEEE
T ss_pred cceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCc----eEEEEecCCCCCCEEEEEeCCCeEEEEEC
Confidence 344555556679999999999999999997 5677899999 999999988 899999999999999998
Q ss_pred ecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCC--CcEEEEEeCCCeEEE
Q psy13856 94 VQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLS--KCMIASCSQDRKVII 171 (271)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~--~~~l~s~~~dg~i~i 171 (271)
. .+.+.....+.+|...|.+++|+| + +.++++|+.||.|++
T Consensus 85 ~---------------------------------~~~~~~~~~~~~h~~~V~~v~~sp----~~~~~~l~sgs~dg~I~v 127 (753)
T 3jro_A 85 E---------------------------------NGRWSQIAVHAVHSASVNSVQWAP----HEYGPLLLVASSDGKVSV 127 (753)
T ss_dssp E---------------------------------TTEEEEEEEECCCSSCEEEEEECC----GGGCSEEEEEETTSEEEE
T ss_pred C---------------------------------CCcccccccccCCCCCeEEEEECC----CCCCCEEEEEeCCCcEEE
Confidence 2 333346677788999999999999 6 899999999999999
Q ss_pred EEcCCCceeeeeeeccCCCCeEEEEEec-------------CCCEEEEEECCCcEEEEEeCCCC-ceeEEEEecccchh
Q psy13856 172 WTSNDYVTWTPFIMNTFDDVVWNVSWSL-------------TGDILTVSCGDNSVSLWKENTDG-AWQCITEMGKTSEQ 236 (271)
Q Consensus 172 wd~~~~~~~~~~~~~~h~~~v~~v~~~~-------------~g~~l~s~s~D~~v~iw~~~~~~-~~~~~~~~~~~~~~ 236 (271)
||++.........+.+|...|.+++|+| ++.++++|+.||.|++||++.+. .+.....+.+|...
T Consensus 128 wdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~ 206 (753)
T 3jro_A 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDW 206 (753)
T ss_dssp EECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSC
T ss_pred EEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCc
Confidence 9999875433566788999999999999 58999999999999999998653 34556666665543
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.90 E-value=4.4e-22 Score=167.26 Aligned_cols=147 Identities=17% Similarity=0.195 Sum_probs=125.6
Q ss_pred cCCCCCCCEEEEccCCCeEEeccc-----eeeecc---c---cccccccceEEEEcCCCCeEEEEeCC---CcEEEEEee
Q psy13856 29 ESPLRIGHTLISCDTQAHIGIRST-----ISLLQG---S---VYLRRESNKAGALSPKLNRSATSSFH---EAAKHLGTV 94 (271)
Q Consensus 29 ~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~---h---~~~~~~~i~~~~~s~~~~~l~s~s~d---~~i~~~d~~ 94 (271)
....|++ ++++++.|+.|++||+ +..+.. | ... |.+++|+|++++|++++.| +.|++||.
T Consensus 192 ~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~----i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~- 265 (397)
T 1sq9_A 192 VDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS----IRSVKFSPQGSLLAIAHDSNSFGCITLYET- 265 (397)
T ss_dssp EEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC----EEEEEECSSTTEEEEEEEETTEEEEEEEET-
T ss_pred EEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc----cceEEECCCCCEEEEEecCCCCceEEEEEC-
Confidence 3445788 9999999999999998 566677 8 888 9999999999999999999 99999998
Q ss_pred cCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecC-------------CCcceEEEEEccCCCCCCcEEE
Q psy13856 95 QSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLEN-------------HSDWVRDVAWAPSWGLSKCMIA 161 (271)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~-------------h~~~v~~v~~~p~~~~~~~~l~ 161 (271)
.+++. +..+.+ |...|.+++|+| ++.+|+
T Consensus 266 --~~~~~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----~~~~l~ 307 (397)
T 1sq9_A 266 --EFGER--------------------------------IGSLSVPTHSSQASLGEFAHSSWVMSLSFND----SGETLC 307 (397)
T ss_dssp --TTCCE--------------------------------EEEECBC--------CCBSBSSCEEEEEECS----SSSEEE
T ss_pred --CCCcc--------------------------------cceeccCcccccccccccccCCcEEEEEECC----CCCEEE
Confidence 33332 333333 899999999999 699999
Q ss_pred EEeCCCeEEEEEcCCCceeeeeeec------cC---------------CCCeEEEEEecCC----------CEEEEEECC
Q psy13856 162 SCSQDRKVIIWTSNDYVTWTPFIMN------TF---------------DDVVWNVSWSLTG----------DILTVSCGD 210 (271)
Q Consensus 162 s~~~dg~i~iwd~~~~~~~~~~~~~------~h---------------~~~v~~v~~~~~g----------~~l~s~s~D 210 (271)
+++.|+.|++||+++.+. ...+. +| ...|++++|+|++ .+|++++.|
T Consensus 308 ~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d 385 (397)
T 1sq9_A 308 SAGWDGKLRFWDVKTKER--ITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD 385 (397)
T ss_dssp EEETTSEEEEEETTTTEE--EEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT
T ss_pred EEeCCCeEEEEEcCCCce--eEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCC
Confidence 999999999999998876 56666 67 8999999999998 799999999
Q ss_pred CcEEEEEeCCC
Q psy13856 211 NSVSLWKENTD 221 (271)
Q Consensus 211 ~~v~iw~~~~~ 221 (271)
+.|++|+++++
T Consensus 386 g~i~iw~~~~g 396 (397)
T 1sq9_A 386 RSIRWFREAGG 396 (397)
T ss_dssp TEEEEEEEEC-
T ss_pred CcEEEEEcCCC
Confidence 99999999864
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.4e-22 Score=167.95 Aligned_cols=185 Identities=11% Similarity=0.022 Sum_probs=137.4
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc--------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCC
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST--------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
+......|++++|++|+.|+.|++||+ ...+.+|... |.+++|+|++++|++++.|+.|++||...+.
T Consensus 58 v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~ 133 (377)
T 3dwl_C 58 VTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRA----ATFVRWSPNEDKFAVGSGARVISVCYFEQEN 133 (377)
T ss_dssp EEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSC----EEEEECCTTSSCCEEEESSSCEEECCC----
T ss_pred EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCc----eEEEEECCCCCEEEEEecCCeEEEEEECCcc
Confidence 344455679999999999999999998 2345678888 9999999999999999999999999984322
Q ss_pred CCceeecc------ceeeEEEeeccceee-----eEEEE-eeC-----------------CceEEeEEecCCCcceEEEE
Q psy13856 98 SPACLQPK------YFKLTVYSTKLTRIL-----ILVRI-CGG-----------------DKWIEETKLENHSDWVRDVA 148 (271)
Q Consensus 98 ~~~~~~~~------~~~~~~~~~~~~~l~-----~~v~i-~~~-----------------~~~~~~~~~~~h~~~v~~v~ 148 (271)
...+.... ......++.+++.++ +.+++ ... ........+ +|...|.+++
T Consensus 134 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~ 212 (377)
T 3dwl_C 134 DWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVG 212 (377)
T ss_dssp -CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEE
T ss_pred cceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEE
Confidence 11122222 224455666677777 67777 211 112556666 8999999999
Q ss_pred EccCCCCCCcEEEEEeCCCeEEEEEcCCCcee--eeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 149 WAPSWGLSKCMIASCSQDRKVIIWTSNDYVTW--TPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 149 ~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
|+| ++.+|++++.|+.|++||++++... ....+.+|...|.+++|+|++.+|++++.|+.+ +|+...
T Consensus 213 ~sp----~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 213 FSP----SGNALAYAGHDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp ECT----TSSCEEEEETTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred ECC----CCCEEEEEeCCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 999 6999999999999999999987641 135677899999999999999999998766655 777653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-21 Score=156.36 Aligned_cols=185 Identities=12% Similarity=0.063 Sum_probs=145.8
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc--------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST--------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
......|++.+|++|+.|+.|++|++ +..+.+|... |.+++| +++.+++++.|+.+++||.
T Consensus 63 ~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~----i~~~~~--~~~~l~~~~~d~~i~~~d~----- 131 (313)
T 3odt_A 63 NSVCYDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGN----VCSLSF--QDGVVISGSWDKTAKVWKE----- 131 (313)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSC----EEEEEE--ETTEEEEEETTSEEEEEET-----
T ss_pred EEEEECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccC----EEEEEe--cCCEEEEEeCCCCEEEEcC-----
Confidence 33444579999999999999999997 5667889988 999999 5789999999999999993
Q ss_pred Cceeecc-----ceeeEEEee-ccceee-----eEEEEeeCCceEEeEEecC-CCcceEEEEEccCCCCCCcEEEEEeCC
Q psy13856 99 PACLQPK-----YFKLTVYST-KLTRIL-----ILVRICGGDKWIEETKLEN-HSDWVRDVAWAPSWGLSKCMIASCSQD 166 (271)
Q Consensus 99 ~~~~~~~-----~~~~~~~~~-~~~~l~-----~~v~i~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~~~d 166 (271)
+...... ......+.. ++..++ +.+++.+.. .....+.. |...+.+++|+| ++. +++++.|
T Consensus 132 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~--~~~~~~~~~~~~~i~~~~~~~----~~~-~~~~~~d 204 (313)
T 3odt_A 132 GSLVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQND--KVIKTFSGIHNDVVRHLAVVD----DGH-FISCSND 204 (313)
T ss_dssp TEEEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEETT--EEEEEECSSCSSCEEEEEEEE----TTE-EEEEETT
T ss_pred CcEEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEecC--ceEEEEeccCcccEEEEEEcC----CCe-EEEccCC
Confidence 2222222 112233333 566666 778885555 56677777 899999999999 466 9999999
Q ss_pred CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccch
Q psy13856 167 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSE 235 (271)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 235 (271)
+.|++||+++++. ...+.+|...|.+++|+|++ .|++++.|+.|++||++++ +....+..+..
T Consensus 205 g~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~---~~~~~~~~~~~ 267 (313)
T 3odt_A 205 GLIKLVDMHTGDV--LRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENG---SLKQVITLPAI 267 (313)
T ss_dssp SEEEEEETTTCCE--EEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTC---CEEEEEECSSS
T ss_pred CeEEEEECCchhh--hhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCC---ceeEEEeccCc
Confidence 9999999998876 67788999999999999999 5889999999999999877 55666665543
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-22 Score=166.52 Aligned_cols=186 Identities=13% Similarity=0.121 Sum_probs=144.4
Q ss_pred CCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEEeecCCCCceeecc---
Q psy13856 35 GHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLGTVQSSSPACLQPK--- 105 (271)
Q Consensus 35 g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~--- 105 (271)
+.+|++|+.||.|++||+ +..+.+|... |.+++|+| ++++|++++.|+.|++||. .+++.....
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~----i~~~~~~~~~~~~l~s~~~dg~i~iwd~---~~~~~~~~~~~~ 157 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITMQCIKHYVGHGNA----INELKFHPRDPNLLLSVSKDHALRLWNI---QTDTLVAIFGGV 157 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTCCEEEEEESCCSC----EEEEEECSSCTTEEEEEETTSCEEEEET---TTTEEEEEECST
T ss_pred CCEEEEecCCCEEEEEEchhceEeeeecCCCCc----EEEEEECCCCCCEEEEEeCCCeEEEEEe---ecCeEEEEeccc
Confidence 779999999999999998 6778889999 99999999 9999999999999999998 555555443
Q ss_pred -ce----eeEEEeeccceee-----eEEEEeeCCceEE----------------------------eEEecCCCcceEEE
Q psy13856 106 -YF----KLTVYSTKLTRIL-----ILVRICGGDKWIE----------------------------ETKLENHSDWVRDV 147 (271)
Q Consensus 106 -~~----~~~~~~~~~~~l~-----~~v~i~~~~~~~~----------------------------~~~~~~h~~~v~~v 147 (271)
.+ ....++.++..++ +.+++.+....+. .....+|...|.++
T Consensus 158 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 237 (366)
T 3k26_A 158 EGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCV 237 (366)
T ss_dssp TSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEE
T ss_pred ccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEE
Confidence 12 3445556677766 6777722111011 22334499999999
Q ss_pred EEccCCCCCCcEEEEEeCCCeEEEEEcCCCce------------eeeeeeccCCCCeEEEEEecC--CCEEEEEECCCcE
Q psy13856 148 AWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT------------WTPFIMNTFDDVVWNVSWSLT--GDILTVSCGDNSV 213 (271)
Q Consensus 148 ~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~------------~~~~~~~~h~~~v~~v~~~~~--g~~l~s~s~D~~v 213 (271)
+|++ .++++++.|+.|++||+++... .....+..|...|++++|+|+ +.+|++++.||.|
T Consensus 238 ~~~~------~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i 311 (366)
T 3k26_A 238 RWLG------DLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKL 311 (366)
T ss_dssp EEET------TEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCE
T ss_pred EEcC------CEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcE
Confidence 9984 5999999999999999987543 225567789999999999999 9999999999999
Q ss_pred EEEEeCCCCcee-EEEEeccc
Q psy13856 214 SLWKENTDGAWQ-CITEMGKT 233 (271)
Q Consensus 214 ~iw~~~~~~~~~-~~~~~~~~ 233 (271)
++||++.+.... ....+..+
T Consensus 312 ~vwd~~~~~~~~~~~~~~~~~ 332 (366)
T 3k26_A 312 YVWDLEVEDPHKAKCTTLTHH 332 (366)
T ss_dssp EEEECCSSSGGGCEEEEECCT
T ss_pred EEEECCCCCCccccceEEccc
Confidence 999998764332 44556555
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.89 E-value=7.8e-23 Score=172.44 Aligned_cols=147 Identities=10% Similarity=0.005 Sum_probs=118.5
Q ss_pred CCCCEEEEccCCCeEEeccc----------eeeeccccccccccceEEEEcC--------CCCeEEEEeCCCcEEEEEee
Q psy13856 33 RIGHTLISCDTQAHIGIRST----------ISLLQGSVYLRRESNKAGALSP--------KLNRSATSSFHEAAKHLGTV 94 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~----------~~~~~~h~~~~~~~i~~~~~s~--------~~~~l~s~s~d~~i~~~d~~ 94 (271)
+++.+|++|+.|++|+|||. +..+.+|.+. |++++|+| |+++|++|+.|++|++||+.
T Consensus 99 ~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~----v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~ 174 (393)
T 4gq1_A 99 VYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNF----VNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT 174 (393)
T ss_dssp EEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSC----EEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred CCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCc----eEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence 46678999999999999997 3446899999 99999998 78999999999999999982
Q ss_pred cCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEc
Q psy13856 95 QSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTS 174 (271)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~ 174 (271)
.+ .....+.+|...|.+++|+|. +..+|++|+.|+.|++||+
T Consensus 175 ---------------------------------~~--~~~~~~~~~~~~v~~v~~~p~---~~~~l~~~~~d~~v~~wd~ 216 (393)
T 4gq1_A 175 ---------------------------------DE--GPILAGYPLSSPGISVQFRPS---NPNQLIVGERNGNIRIFDW 216 (393)
T ss_dssp ---------------------------------TT--EEEEEEEECSSCEEEEEEETT---EEEEEEEEETTSEEEEEET
T ss_pred ---------------------------------CC--ceeeeecCCCCCcEEEEECCC---CCceEEecCCCCEEEEEEC
Confidence 22 345556678899999999995 4568999999999999999
Q ss_pred CCCceee-----------------------eeeeccCCCCeEEEEEe-cCCCEEEEEECCCcEEEEEeCCC
Q psy13856 175 NDYVTWT-----------------------PFIMNTFDDVVWNVSWS-LTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 175 ~~~~~~~-----------------------~~~~~~h~~~v~~v~~~-~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+++.... .....+|...+.++.|+ |++..|++++.|+++++||+...
T Consensus 217 ~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~ 287 (393)
T 4gq1_A 217 TLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN 287 (393)
T ss_dssp TCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---
T ss_pred CCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC
Confidence 8754210 01124677889999997 79999999999999999999866
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=167.19 Aligned_cols=187 Identities=15% Similarity=0.178 Sum_probs=142.9
Q ss_pred cccCCCCCCC-EEEEccCCCeEEeccc------------eeeeccccccccccceEEEEcC-CCCeEEEEeCCCcEEEEE
Q psy13856 27 YTESPLRIGH-TLISCDTQAHIGIRST------------ISLLQGSVYLRRESNKAGALSP-KLNRSATSSFHEAAKHLG 92 (271)
Q Consensus 27 ~~~~~~~~g~-~l~s~s~d~~i~lwd~------------~~~~~~h~~~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~d 92 (271)
+.....+++. +|++|+.||.|++|++ ...+.+|... |.+++|+| ++..|++++.|+.|++||
T Consensus 185 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~----v~~v~~~p~~~~~l~s~~~dg~i~i~d 260 (430)
T 2xyi_A 185 YGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAV----VEDVAWHLLHESLFGSVADDQKLMIWD 260 (430)
T ss_dssp CCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSC----EEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred EEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCC----EeeeEEeCCCCCEEEEEeCCCeEEEEE
Confidence 4445557777 9999999999999998 2345688888 99999999 678999999999999999
Q ss_pred eecCCCCceeecc-----ceeeEEEeeccc-eee-----eEEEEeeCC-ceEEeEEecCCCcceEEEEEccCCCCCCcEE
Q psy13856 93 TVQSSSPACLQPK-----YFKLTVYSTKLT-RIL-----ILVRICGGD-KWIEETKLENHSDWVRDVAWAPSWGLSKCMI 160 (271)
Q Consensus 93 ~~~~~~~~~~~~~-----~~~~~~~~~~~~-~l~-----~~v~i~~~~-~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l 160 (271)
+............ ......++..+. .++ +.|++.+-. .-..+..+.+|...|.+++|+|. +..+|
T Consensus 261 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~---~~~~l 337 (430)
T 2xyi_A 261 TRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH---NETIL 337 (430)
T ss_dssp TTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSS---CTTEE
T ss_pred CCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCC---CCCEE
Confidence 9533211333222 224445556565 354 788882211 11567788889999999999995 34689
Q ss_pred EEEeCCCeEEEEEcCCCce------------eeeeeeccCCCCeEEEEEecCCC-EEEEEECCCcEEEEEeCC
Q psy13856 161 ASCSQDRKVIIWTSNDYVT------------WTPFIMNTFDDVVWNVSWSLTGD-ILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 161 ~s~~~dg~i~iwd~~~~~~------------~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~v~iw~~~~ 220 (271)
++++.|+.|++||+..... .......+|...|++++|+|++. +|++++.||.|+||++..
T Consensus 338 ~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 338 ASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp EEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred EEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 9999999999999987221 11556678999999999999998 899999999999999974
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.1e-21 Score=160.60 Aligned_cols=175 Identities=9% Similarity=0.011 Sum_probs=129.7
Q ss_pred EEEccCCCeEEeccc--------------e-eeeccccccccccceEEEEcC--CCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 38 LISCDTQAHIGIRST--------------I-SLLQGSVYLRRESNKAGALSP--KLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 38 l~s~s~d~~i~lwd~--------------~-~~~~~h~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
+++++.|++|++|+. + ....+|.+. |.+++|+| +++++++++.|++|++||+ .+++
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~l~s~s~dg~i~~wd~---~~~~ 160 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANE----IIYMYGHNEVNTEYFIWADNRGTIGFQSY---EDDS 160 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSC----EEEEECCC---CCEEEEEETTCCEEEEES---SSSC
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCC----EEEEEcCCCCCCCEEEEEeCCCcEEEEEC---CCCc
Confidence 999999999999976 1 111244466 99999999 9999999999999999999 5565
Q ss_pred eeecc------ceeeEEEeeccceee-----eEEEEeeCCceEEe-EEecC-CCcceEEEEEccCCCCCCcEEEEEeCCC
Q psy13856 101 CLQPK------YFKLTVYSTKLTRIL-----ILVRICGGDKWIEE-TKLEN-HSDWVRDVAWAPSWGLSKCMIASCSQDR 167 (271)
Q Consensus 101 ~~~~~------~~~~~~~~~~~~~l~-----~~v~i~~~~~~~~~-~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~~~dg 167 (271)
+.... ......+++++.+++ +.|++.+....... ..+.+ |.+.|.+++|+| ++.+|++++ |+
T Consensus 161 ~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~----~g~~l~s~~-~~ 235 (343)
T 3lrv_A 161 QYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFAD----NGYWMVVEC-DQ 235 (343)
T ss_dssp EEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECT----TSSEEEEEE-SS
T ss_pred EEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeC----CCCEEEEEe-CC
Confidence 54332 234556777788887 88888222211344 66777 999999999999 699999999 55
Q ss_pred eEEEEEcCCCceeeeeeecc---CCCCeE--EEEEecCCCEEEEEEC-CCcEEEEEeCCC-CceeE
Q psy13856 168 KVIIWTSNDYVTWTPFIMNT---FDDVVW--NVSWSLTGDILTVSCG-DNSVSLWKENTD-GAWQC 226 (271)
Q Consensus 168 ~i~iwd~~~~~~~~~~~~~~---h~~~v~--~v~~~~~g~~l~s~s~-D~~v~iw~~~~~-~~~~~ 226 (271)
.|++||+++... ...+.. |...+. +++|+|+|.+|++++. |+.+++|++... ..|..
T Consensus 236 ~v~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~ 299 (343)
T 3lrv_A 236 TVVCFDLRKDVG--TLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK 299 (343)
T ss_dssp BEEEEETTSSTT--CBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE
T ss_pred eEEEEEcCCCCc--ceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe
Confidence 999999998764 333322 333443 6999999999999998 999999999654 34665
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-21 Score=163.80 Aligned_cols=151 Identities=9% Similarity=-0.044 Sum_probs=121.2
Q ss_pred eeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-----ceeeEEEeeccceee-----eEEE
Q psy13856 55 LLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-----YFKLTVYSTKLTRIL-----ILVR 124 (271)
Q Consensus 55 ~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~-----~~v~ 124 (271)
.+..|... |.+++|+|++++|++++.|+.|++||. ..++..... ......++.++ .++ +.++
T Consensus 242 ~~~~~~~~----i~~~~~~~~~~~l~~~~~d~~i~i~d~---~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~ 313 (425)
T 1r5m_A 242 KLIGHHGP----ISVLEFNDTNKLLLSASDDGTLRIWHG---GNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVR 313 (425)
T ss_dssp EECCCSSC----EEEEEEETTTTEEEEEETTSCEEEECS---SSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEE
T ss_pred eeccCCCc----eEEEEECCCCCEEEEEcCCCEEEEEEC---CCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEE
Confidence 34456666 899999999999999999999999998 444443332 22344455556 544 7888
Q ss_pred EeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc--------------------eeeeee
Q psy13856 125 ICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV--------------------TWTPFI 184 (271)
Q Consensus 125 i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------------~~~~~~ 184 (271)
+.+....+.+..+..|...|.+++|+| ++.+|++++.||.|++||+++.. . ...
T Consensus 314 i~d~~~~~~~~~~~~~~~~i~~~~~s~----~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 387 (425)
T 1r5m_A 314 LWSLKQNTLLALSIVDGVPIFAGRISQ----DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPL--YAS 387 (425)
T ss_dssp EEETTTTEEEEEEECTTCCEEEEEECT----TSSEEEEEETTSCEEEEECHHHHC--------------CEECCE--EEE
T ss_pred EEECCCCcEeEecccCCccEEEEEEcC----CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchh--hhh
Confidence 833222277888889999999999999 69999999999999999998765 3 667
Q ss_pred eccCCC--CeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 185 MNTFDD--VVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 185 ~~~h~~--~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
+..|.. .|.+++|+|++.+|++++.||.|++|+++
T Consensus 388 ~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 388 YQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp ECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred hcCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 788866 99999999999999999999999999985
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.9e-22 Score=167.92 Aligned_cols=182 Identities=13% Similarity=0.085 Sum_probs=144.4
Q ss_pred cCCCCC-CCEEEEccCCCeEEeccc---e------ee-----eccccccccccceEEEEcCC-CCeEEEEeCCCcEEEEE
Q psy13856 29 ESPLRI-GHTLISCDTQAHIGIRST---I------SL-----LQGSVYLRRESNKAGALSPK-LNRSATSSFHEAAKHLG 92 (271)
Q Consensus 29 ~~~~~~-g~~l~s~s~d~~i~lwd~---~------~~-----~~~h~~~~~~~i~~~~~s~~-~~~l~s~s~d~~i~~~d 92 (271)
....|+ +.+|++++.|+.|++||+ . .. +..|... |.+++|+|+ +.+|++++.|+.|++||
T Consensus 119 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~v~iwd 194 (416)
T 2pm9_A 119 VKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE----VISLAWNQSLAHVFASAGSSNFASIWD 194 (416)
T ss_dssp EEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC----CCEEEECSSCTTEEEEESSSSCEEEEE
T ss_pred EEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC----eeEEEeCCCCCcEEEEEcCCCCEEEEE
Confidence 334466 889999999999999998 2 11 2467777 999999998 78999999999999999
Q ss_pred eecCCCCceeeccc-----------eeeEEEeecc-ceee-----e---EEEEeeCCc-eEEeEEec-CCCcceEEEEEc
Q psy13856 93 TVQSSSPACLQPKY-----------FKLTVYSTKL-TRIL-----I---LVRICGGDK-WIEETKLE-NHSDWVRDVAWA 150 (271)
Q Consensus 93 ~~~~~~~~~~~~~~-----------~~~~~~~~~~-~~l~-----~---~v~i~~~~~-~~~~~~~~-~h~~~v~~v~~~ 150 (271)
. ..++...... .....++.++ ..++ + .|++.+... ......+. +|...|.+++|+
T Consensus 195 ~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s 271 (416)
T 2pm9_A 195 L---KAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWC 271 (416)
T ss_dssp T---TTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEEC
T ss_pred C---CCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeC
Confidence 8 5555554331 2334455554 3455 3 777722111 14556677 899999999999
Q ss_pred cCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCC-CEEEEEECCCcEEEEEeCCCC
Q psy13856 151 PSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTG-DILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 151 p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g-~~l~s~s~D~~v~iw~~~~~~ 222 (271)
|. ++.+|++++.|+.|++||+++++. ...+.+|...|.+++|+|++ .+|++++.|+.|++|++....
T Consensus 272 ~~---~~~~l~s~~~dg~v~~wd~~~~~~--~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~ 339 (416)
T 2pm9_A 272 HQ---DEHLLLSSGRDNTVLLWNPESAEQ--LSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLT 339 (416)
T ss_dssp SS---CSSCEEEEESSSEEEEECSSSCCE--EEEEECSSSCCCCEEECTTCTTEEEECCSSSEEEEEESCCCC
T ss_pred CC---CCCeEEEEeCCCCEEEeeCCCCcc--ceeecCCCCceEEEEECCCCCCEEEEEecCCcEEEEEccCCC
Confidence 95 689999999999999999998876 77788999999999999998 899999999999999998653
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.5e-21 Score=186.24 Aligned_cols=198 Identities=13% Similarity=0.175 Sum_probs=155.9
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
..++.....|+|+++++|+.||+|++||. +..+.+|... |.+++|+|++++|++++.|++|++||. .+
T Consensus 616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~----v~~~~~s~~~~~l~s~~~d~~v~vwd~---~~ 688 (1249)
T 3sfz_A 616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDE----VLCCAFSSDDSYIATCSADKKVKIWDS---AT 688 (1249)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSC----EEEEEECTTSSEEEEEETTSEEEEEET---TT
T ss_pred ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCC----EEEEEEecCCCEEEEEeCCCeEEEEEC---CC
Confidence 33455556679999999999999999998 6778899999 999999999999999999999999999 66
Q ss_pred Cceeecc-ce----eeEEEeec--cceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCC
Q psy13856 99 PACLQPK-YF----KLTVYSTK--LTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQD 166 (271)
Q Consensus 99 ~~~~~~~-~~----~~~~~~~~--~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d 166 (271)
++++... .+ ....++.+ ...++ +.+++++.........+.+|.+.|.+++|+| ++.++++|+.|
T Consensus 689 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp----~~~~l~s~s~d 764 (1249)
T 3sfz_A 689 GKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSP----DDELLASCSAD 764 (1249)
T ss_dssp CCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECS----STTEEEEEESS
T ss_pred CceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEec----CCCEEEEEECC
Confidence 7666554 22 33444443 23444 6788832222267888899999999999999 69999999999
Q ss_pred CeEEEEEcCCCceee-----------------------------------------------------eeeeccCCCCeE
Q psy13856 167 RKVIIWTSNDYVTWT-----------------------------------------------------PFIMNTFDDVVW 193 (271)
Q Consensus 167 g~i~iwd~~~~~~~~-----------------------------------------------------~~~~~~h~~~v~ 193 (271)
|.|++||++++.... .....+|...+.
T Consensus 765 g~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~ 844 (1249)
T 3sfz_A 765 GTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQ 844 (1249)
T ss_dssp SEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCC
T ss_pred CeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceE
Confidence 999999987653210 001126788999
Q ss_pred EEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccch
Q psy13856 194 NVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSE 235 (271)
Q Consensus 194 ~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 235 (271)
+++|+|++.++++++.|+.|++|++.++ ..+..+.+|..
T Consensus 845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~h~~ 883 (1249)
T 3sfz_A 845 YCDFSPYDHLAVIALSQYCVELWNIDSR---LKVADCRGHLS 883 (1249)
T ss_dssp EEEECSSTTEEEEECSSSCEEEEETTTT---EEEEEECCCSS
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEEcCCC---ceeeecCCCcc
Confidence 9999999999999999999999999876 56666666554
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=6.9e-21 Score=155.03 Aligned_cols=189 Identities=16% Similarity=0.096 Sum_probs=139.2
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeee--ccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLL--QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~--~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
+++ +||+| .|++|+|||. ++.+ .+|... |.+++|+|++++|++|+.|++|++|+. ++++++...
T Consensus 35 ~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~----V~~v~~~~~~~~l~sgs~Dg~v~iw~~---~~~~~~~~~ 105 (318)
T 4ggc_A 35 SGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEY----ISSVAWIKEGNYLAVGTSSAEVQLWDV---QQQKRLRNM 105 (318)
T ss_dssp TTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCC----EEEEEECTTSSEEEEEETTSEEEEEET---TTTEEEEEE
T ss_pred CCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCe----EEEEEECCCCCEEEEEECCCcEEEeec---CCceeEEEe
Confidence 454 66665 5899999998 3433 567778 999999999999999999999999999 777776655
Q ss_pred -ce--eeEEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC
Q psy13856 106 -YF--KLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 106 -~~--~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 176 (271)
.+ ........+..++ +.+.+ ...........+.+|...+..+.+++ ++.++++++.|+.|++||+++
T Consensus 106 ~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~s~~~d~~i~iwd~~~ 181 (318)
T 4ggc_A 106 TSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP----DGRHLASGGNDNLVNVWPSAP 181 (318)
T ss_dssp ECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT----TSSEEEEEETTSCEEEEESSC
T ss_pred cCccceEEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC----CCCEEEEEecCcceeEEECCC
Confidence 22 2333444455555 55555 32222356778889999999999999 689999999999999999976
Q ss_pred Ccee----------------------------------------------eeeeeccCCCCeEEEEEecCCCEEEEEE--
Q psy13856 177 YVTW----------------------------------------------TPFIMNTFDDVVWNVSWSLTGDILTVSC-- 208 (271)
Q Consensus 177 ~~~~----------------------------------------------~~~~~~~h~~~v~~v~~~~~g~~l~s~s-- 208 (271)
++.. .......+...+..+.|+|++..+++++
T Consensus 182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~ 261 (318)
T 4ggc_A 182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGF 261 (318)
T ss_dssp BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECT
T ss_pred CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccceeeeeeeeecccccceEEEEEc
Confidence 3210 0001112345677888888888877765
Q ss_pred CCCcEEEEEeCCCCceeEEEEecccchhh
Q psy13856 209 GDNSVSLWKENTDGAWQCITEMGKTSEQR 237 (271)
Q Consensus 209 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 237 (271)
.|+.|++||++++ +++.++.+|....
T Consensus 262 ~d~~i~iwd~~~~---~~~~~l~gH~~~V 287 (318)
T 4ggc_A 262 AQNQLVIWKYPTM---AKVAELKGHTSRV 287 (318)
T ss_dssp TTCCEEEEETTTC---CEEEEECCCSSCE
T ss_pred CCCEEEEEECCCC---cEEEEEcCCCCCE
Confidence 6899999999877 7788888886653
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-20 Score=162.03 Aligned_cols=195 Identities=9% Similarity=0.031 Sum_probs=148.5
Q ss_pred ecccCCCCCCCEE-EEccCCCeEEeccc-------eeeec--cccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeec
Q psy13856 26 TYTESPLRIGHTL-ISCDTQAHIGIRST-------ISLLQ--GSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQ 95 (271)
Q Consensus 26 ~~~~~~~~~g~~l-~s~s~d~~i~lwd~-------~~~~~--~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~ 95 (271)
+......|++++| ++|+.|+.|++||+ +..+. .|... |.+++|+|++++|++|+.|+.+++|++.+
T Consensus 105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~----v~~~~~sp~~~~l~~~~~~g~v~~~~~~~ 180 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKR----PNAISIAEDDTTVIIADKFGDVYSIDINS 180 (450)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSC----EEEEEECTTSSEEEEEETTSEEEEEETTS
T ss_pred eEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCC----ceEEEEcCCCCEEEEEeCCCcEEEEecCC
Confidence 3444556799985 99999999999997 34444 45566 89999999999999999999999999843
Q ss_pred CCCCc-eeecc-----ceeeEEEeec---cceee-----eEEEE--eeCCceEEeEE-ecCCCcceEEEEEccCCCCCCc
Q psy13856 96 SSSPA-CLQPK-----YFKLTVYSTK---LTRIL-----ILVRI--CGGDKWIEETK-LENHSDWVRDVAWAPSWGLSKC 158 (271)
Q Consensus 96 ~~~~~-~~~~~-----~~~~~~~~~~---~~~l~-----~~v~i--~~~~~~~~~~~-~~~h~~~v~~v~~~p~~~~~~~ 158 (271)
+.... +.... ......++.+ +++++ +.|++ ...+ ..+.. +.+|...|.+++|+ + +.
T Consensus 181 ~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~--~~~~~~~~~h~~~v~~~~~s-d----~~ 253 (450)
T 2vdu_B 181 IPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQC--FIVDKWLFGHKHFVSSICCG-K----DY 253 (450)
T ss_dssp CCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCT--TCEEEECCCCSSCEEEEEEC-S----TT
T ss_pred cccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCC--ceeeeeecCCCCceEEEEEC-C----CC
Confidence 33222 11122 2245567777 76776 77888 3334 34444 56899999999999 6 88
Q ss_pred EEEEEeCCCeEEEEEcCCCceeeeeeec-------------------------cCCCCeEEEEEecCCCEEEEEE-CCCc
Q psy13856 159 MIASCSQDRKVIIWTSNDYVTWTPFIMN-------------------------TFDDVVWNVSWSLTGDILTVSC-GDNS 212 (271)
Q Consensus 159 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------------------~h~~~v~~v~~~~~g~~l~s~s-~D~~ 212 (271)
+|++|+.|+.|++||+++++. ...+. .....|.+++|+|++.+|++++ .|+.
T Consensus 254 ~l~s~~~d~~v~vwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~ 331 (450)
T 2vdu_B 254 LLLSAGGDDKIFAWDWKTGKN--LSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKC 331 (450)
T ss_dssp EEEEEESSSEEEEEETTTCCE--EEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSE
T ss_pred EEEEEeCCCeEEEEECCCCcE--eeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCe
Confidence 999999999999999998875 33332 2345789999999999999999 8999
Q ss_pred EEEEEe--CCCCceeEEEEeccc
Q psy13856 213 VSLWKE--NTDGAWQCITEMGKT 233 (271)
Q Consensus 213 v~iw~~--~~~~~~~~~~~~~~~ 233 (271)
|++|++ ..++.+..+..+..+
T Consensus 332 i~iw~~~~~~~~~l~~~~~~~~~ 354 (450)
T 2vdu_B 332 IIILEMSEKQKGDLALKQIITFP 354 (450)
T ss_dssp EEEEEECSSSTTCEEEEEEEECS
T ss_pred EEEEEeccCCCCceeeccEeccC
Confidence 999999 556667777777665
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-20 Score=154.83 Aligned_cols=195 Identities=10% Similarity=0.041 Sum_probs=151.1
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCC-----CcEEEEEeecC
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH-----EAAKHLGTVQS 96 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d-----~~i~~~d~~~~ 96 (271)
......|++++|++++.|+.|++||+ +..+. |... +.+++|+|+++++++++.+ +.+++|+....
T Consensus 78 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~----v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~ 152 (369)
T 3zwl_B 78 WSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVP----VKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERD 152 (369)
T ss_dssp EEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSC----EEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEEC
T ss_pred EEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCC----eEEEEEccCCCEEEEecCCccCCCCEEEEEEecCC
Confidence 34445579999999999999999998 44444 6777 9999999999999999999 99999998543
Q ss_pred CCCceeecc---------------ceeeEEEeeccceee-----eEEEEeeCCc-eEEeEEecCCCcceEEEEEccCCCC
Q psy13856 97 SSPACLQPK---------------YFKLTVYSTKLTRIL-----ILVRICGGDK-WIEETKLENHSDWVRDVAWAPSWGL 155 (271)
Q Consensus 97 ~~~~~~~~~---------------~~~~~~~~~~~~~l~-----~~v~i~~~~~-~~~~~~~~~h~~~v~~v~~~p~~~~ 155 (271)
......... ......++.+++.++ +.|++.+... ......+..|...|.+++|+|
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~---- 228 (369)
T 3zwl_B 153 SATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSP---- 228 (369)
T ss_dssp TTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECT----
T ss_pred ccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECC----
Confidence 322111110 223344555676666 7788822221 377888899999999999999
Q ss_pred CCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCC--------------cEEEEEeCCC
Q psy13856 156 SKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDN--------------SVSLWKENTD 221 (271)
Q Consensus 156 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~--------------~v~iw~~~~~ 221 (271)
++.+|++++.|+.|++||+++... ...+. +...+.+++|+|++.++++++.++ .+++||..++
T Consensus 229 ~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~ 305 (369)
T 3zwl_B 229 DLTYFITSSRDTNSFLVDVSTLQV--LKKYE-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE 305 (369)
T ss_dssp TSSEEEEEETTSEEEEEETTTCCE--EEEEE-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC
T ss_pred CCCEEEEecCCceEEEEECCCCce--eeeec-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC
Confidence 699999999999999999998875 34444 778999999999999999999988 8999998877
Q ss_pred CceeEEEEecccchh
Q psy13856 222 GAWQCITEMGKTSEQ 236 (271)
Q Consensus 222 ~~~~~~~~~~~~~~~ 236 (271)
+.+..+.+|...
T Consensus 306 ---~~~~~~~~~~~~ 317 (369)
T 3zwl_B 306 ---EEIGRVQGHFGP 317 (369)
T ss_dssp ---CEEEEEECCSSC
T ss_pred ---cchhheecccCc
Confidence 566666665544
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=1e-21 Score=164.56 Aligned_cols=181 Identities=13% Similarity=0.137 Sum_probs=133.6
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCC-eEEEEeCCCcEEEEEeecCCC-Cc
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLN-RSATSSFHEAAKHLGTVQSSS-PA 100 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~~~d~~~~~~-~~ 100 (271)
......|++.+|++|+.|+.|++||+ +..+.+|... |.+++|+|+++ ++++++.|+.|++||+..... +.
T Consensus 167 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~----v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 242 (383)
T 3ei3_B 167 CCVDVSVSRQMLATGDSTGRLLLLGLDGHEIFKEKLHKAK----VTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNS 242 (383)
T ss_dssp EEEEEETTTTEEEEEETTSEEEEEETTSCEEEEEECSSSC----EEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTC
T ss_pred EEEEECCCCCEEEEECCCCCEEEEECCCCEEEEeccCCCc----EEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccc
Confidence 33444579999999999999999998 7778899999 99999999998 999999999999999953221 34
Q ss_pred eeeccc----eeeEEEee-ccceee-----eEEEEeeCCceEEeEEecCC-------Cc----------ceEEEEEccCC
Q psy13856 101 CLQPKY----FKLTVYST-KLTRIL-----ILVRICGGDKWIEETKLENH-------SD----------WVRDVAWAPSW 153 (271)
Q Consensus 101 ~~~~~~----~~~~~~~~-~~~~l~-----~~v~i~~~~~~~~~~~~~~h-------~~----------~v~~v~~~p~~ 153 (271)
++.... .....++. ++..++ +.+++.+.........+.+| .. .+..++|+|
T Consensus 243 ~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~-- 320 (383)
T 3ei3_B 243 YIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYP-- 320 (383)
T ss_dssp EEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBC--
T ss_pred eEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecC--
Confidence 444332 24455666 677777 78888222111233333333 22 333466666
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCCCceeeeeeecc--CCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 154 GLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT--FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 154 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
++.+ +|+.|+.|++||+.+++. ...+.+ |...+.+++|+|++.+|++++ |+.|++||+++
T Consensus 321 --dg~~--s~s~d~~i~iwd~~~~~~--~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 321 --DDQL--LLNDKRTIDIYDANSGGL--VHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp --CTTT--CTTCCCCEEEEETTTCCE--EEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred --Cccc--ccCCCCeEEEEecCCCce--eeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 4555 778999999999998886 556655 567788889999999999997 99999999874
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=2.2e-21 Score=160.76 Aligned_cols=222 Identities=11% Similarity=0.019 Sum_probs=148.9
Q ss_pred cceeEEee-ceeEeeccccc------------cceecccCCCCCCCEEEEccCCCeEEeccc----eeeecccccccccc
Q psy13856 4 KEWLLVSC-DGLLMTLKPTL------------EIETYTESPLRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRES 66 (271)
Q Consensus 4 ~~~~~~~~-~~~~~~~~~~~------------~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~ 66 (271)
+.+|+..+ ||.+..+.... ...+......|++++|++|+.|+.|++||+ ...+..|...
T Consensus 54 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~---- 129 (368)
T 3mmy_A 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAP---- 129 (368)
T ss_dssp SEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC----
T ss_pred ceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCc----
Confidence 35566644 67666554221 112334445579999999999999999999 4456778888
Q ss_pred ceEEEE--cCCCCeEEEEeCCCcEEEEEeecCCCCceeecccee--eEEEeeccceee-----eEEEE--eeCCceEEeE
Q psy13856 67 NKAGAL--SPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFK--LTVYSTKLTRIL-----ILVRI--CGGDKWIEET 135 (271)
Q Consensus 67 i~~~~~--s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~ 135 (271)
|.+++| +|++++|++++.|+.|++||+ .+++.+...... ..........++ +.+.+ ..... ....
T Consensus 130 v~~~~~~~~~~~~~l~~~~~dg~i~vwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~ 205 (368)
T 3mmy_A 130 VKTIHWIKAPNYSCVMTGSWDKTLKFWDT---RSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQP-SEFR 205 (368)
T ss_dssp EEEEEEEECSSCEEEEEEETTSEEEEECS---SCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSC-EEEE
T ss_pred eEEEEEEeCCCCCEEEEccCCCcEEEEEC---CCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEecccc-chhh
Confidence 999999 899999999999999999999 555554443221 111111222222 55555 12221 2222
Q ss_pred Ee-cCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce-eeeeeeccCCC------------CeEEEEEecCC
Q psy13856 136 KL-ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT-WTPFIMNTFDD------------VVWNVSWSLTG 201 (271)
Q Consensus 136 ~~-~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~h~~------------~v~~v~~~~~g 201 (271)
.. ..+...+.++.+.+........+++++.||.|++||++.... .....+..|.. +|.+++|+|++
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~ 285 (368)
T 3mmy_A 206 RIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVH 285 (368)
T ss_dssp ECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTT
T ss_pred hccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCC
Confidence 22 223445566666552111223499999999999999988632 12455666665 79999999999
Q ss_pred CEEEEEECCCcEEEEEeCCCCceeEEEEecccchh
Q psy13856 202 DILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 202 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
.+|++++.||.|++||++++ +++..+..|...
T Consensus 286 ~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~ 317 (368)
T 3mmy_A 286 GTLATVGSDGRFSFWDKDAR---TKLKTSEQLDQP 317 (368)
T ss_dssp CCEEEEETTSCEEEEETTTT---EEEEECCCCSSC
T ss_pred CEEEEEccCCeEEEEECCCC---cEEEEecCCCCC
Confidence 99999999999999999876 677777766543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.3e-22 Score=164.75 Aligned_cols=180 Identities=10% Similarity=0.010 Sum_probs=134.2
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEee------
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTV------ 94 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~------ 94 (271)
....+...++.++++|+.||.|++||+ +..+. ... |.++.|+|+ +++++.|+++++|+..
T Consensus 39 ~~~~~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~----v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~ 109 (343)
T 3lrv_A 39 ELNKSMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPN----PRTGGEHPA---IISRGPCNRLLLLYPGNQITIL 109 (343)
T ss_dssp EECSSSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EEC----CCTTCCCCS---EEEECSTTEEEEEETTTEEEEE
T ss_pred hhhhhhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCC----ceeeeeCCc---eEEecCCCeEEEEEccCceEEe
Confidence 334455578899999999999999998 33333 345 788889988 9999999999999752
Q ss_pred cCCCCceeeccc------eeeEEEee--ccceee-----eEEEE--eeCCceEEeEEe-cCCCcceEEEEEccCCCCCCc
Q psy13856 95 QSSSPACLQPKY------FKLTVYST--KLTRIL-----ILVRI--CGGDKWIEETKL-ENHSDWVRDVAWAPSWGLSKC 158 (271)
Q Consensus 95 ~~~~~~~~~~~~------~~~~~~~~--~~~~l~-----~~v~i--~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~ 158 (271)
+..+++.+.... .....+.+ ++++++ +.+++ ...+ +..... ..|...+.+++|+| ++.
T Consensus 110 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~--~~~~~~~~~~~~~i~~~~~~p----dg~ 183 (343)
T 3lrv_A 110 DSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD--SQYIVHSAKSDVEYSSGVLHK----DSL 183 (343)
T ss_dssp ETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS--CEEEEECCCSSCCCCEEEECT----TSC
T ss_pred ecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC--cEEEEEecCCCCceEEEEECC----CCC
Confidence 112333333221 23344445 566666 78888 2333 444444 34556899999999 799
Q ss_pred EEEEEeCCCeEEEEEcCCCceeeeeeecc-CCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 159 MIASCSQDRKVIIWTSNDYVTWTPFIMNT-FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 159 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
+|++|+.||.|++||++++... ...+.. |.++|.+++|+|+|.+|++++ |+.|++||++...
T Consensus 184 ~lasg~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 184 LLALYSPDGILDVYNLSSPDQA-SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDV 246 (343)
T ss_dssp EEEEECTTSCEEEEESSCTTSC-CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSST
T ss_pred EEEEEcCCCEEEEEECCCCCCC-ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCC
Confidence 9999999999999999998752 156666 999999999999999999999 5599999998764
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.1e-21 Score=176.45 Aligned_cols=193 Identities=12% Similarity=0.073 Sum_probs=150.8
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC-c
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP-A 100 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~-~ 100 (271)
......|++++|++|+.||.|++||+ +..+.+|... |.+++|+|++.+|++++.|+.|++|+. ..+ .
T Consensus 59 ~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~dg~i~vw~~---~~~~~ 131 (814)
T 3mkq_A 59 RAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDY----IRSIAVHPTKPYVLSGSDDLTVKLWNW---ENNWA 131 (814)
T ss_dssp EEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSC----EEEEEECSSSSEEEEEETTSEEEEEEG---GGTSE
T ss_pred EEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC----EEEEEEeCCCCEEEEEcCCCEEEEEEC---CCCce
Confidence 34444579999999999999999998 6778889999 999999999999999999999999998 433 3
Q ss_pred eeecc-----ceeeEEEee-ccceee-----eEEEEeeCCceEEeEEecCC-CcceEEEEEccCCCCCCcEEEEEeCCCe
Q psy13856 101 CLQPK-----YFKLTVYST-KLTRIL-----ILVRICGGDKWIEETKLENH-SDWVRDVAWAPSWGLSKCMIASCSQDRK 168 (271)
Q Consensus 101 ~~~~~-----~~~~~~~~~-~~~~l~-----~~v~i~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~~~~l~s~~~dg~ 168 (271)
..... ......+++ ++..++ +.|++.+.........+..+ ...+.+++|+|.. ++.++++++.||.
T Consensus 132 ~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~l~~~~~dg~ 209 (814)
T 3mkq_A 132 LEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLP--DKPYMITASDDLT 209 (814)
T ss_dssp EEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCST--TCCEEEEECTTSE
T ss_pred EEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECC--CCCEEEEEeCCCE
Confidence 33322 123445555 556666 77888221111334444444 4889999999832 4889999999999
Q ss_pred EEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 169 VIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 169 i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
|++||.+++.. ...+.+|...|.+++|+|++.+|++++.||.|++||+.++ .....+..+
T Consensus 210 i~~~d~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~---~~~~~~~~~ 269 (814)
T 3mkq_A 210 IKIWDYQTKSC--VATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSSTY---KVEKTLNVG 269 (814)
T ss_dssp EEEEETTTTEE--EEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---SEEEEECCS
T ss_pred EEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEeecC
Confidence 99999998776 6778889999999999999999999999999999999875 445555444
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-21 Score=168.94 Aligned_cols=177 Identities=14% Similarity=0.049 Sum_probs=124.3
Q ss_pred cccceecccCCCCCCCEEEEccCCCeEEeccc--eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 21 TLEIETYTESPLRIGHTLISCDTQAHIGIRST--ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 21 ~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~--~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
.++.-+......|||+++||++.|++|+ |. .+.+.+|... |++++|+|+| .++.+.+|+. +.
T Consensus 13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~----v~~V~FsPdg-------~~~~~~~~~~---~~ 76 (588)
T 2j04_A 13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKN----LFHVKEFPLE-------FENKLDFELA---QQ 76 (588)
T ss_dssp CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGG----TEEEEEECCC-------CCCTTTTSCC---CS
T ss_pred HhhccEEEEEECCCCCEEEEEcCCceee--cccccceecCCCcc----EEEEEECCCC-------CcceEEEEeC---CC
Confidence 3344556666677999999999999998 55 4445666666 6777777666 3444444432 21
Q ss_pred Cceee---ccceeeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCc-----ceEEEEEccCCCCCCcEEEEEeC
Q psy13856 99 PACLQ---PKYFKLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSD-----WVRDVAWAPSWGLSKCMIASCSQ 165 (271)
Q Consensus 99 ~~~~~---~~~~~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~-----~v~~v~~~p~~~~~~~~l~s~~~ 165 (271)
..... ........|+++++.++ +.+++++.. .++..+. |.. .|.+++|+| ||++|++|+.
T Consensus 77 ~~~~~~~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~--~~l~~l~-~~~~~~~~sv~svafSP----DG~~LAsgs~ 149 (588)
T 2j04_A 77 NGLLNSQPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDN--KMLTNLD-SKGNLSSRTYHCFEWNP----IESSIVVGNE 149 (588)
T ss_dssp SCSSTTSCSCCEEEEEECSSSSCEEEEETTSCEEEEETT--EEEEECC-CSSCSTTTCEEEEEECS----SSSCEEEEET
T ss_pred ceEeecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCC--ceeeecc-CCCccccccEEEEEEcC----CCCEEEEEcC
Confidence 11111 11335556666666666 566663333 3555566 665 499999999 7999999999
Q ss_pred CCeEEEEEcCCCce-----eeeeee----ccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 166 DRKVIIWTSNDYVT-----WTPFIM----NTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 166 dg~i~iwd~~~~~~-----~~~~~~----~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
||+|++||+..+.. .....+ .+|.+.|.+++|+|+| +++++.|++|++|++..+.
T Consensus 150 DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~ 213 (588)
T 2j04_A 150 DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS 213 (588)
T ss_dssp TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred CCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence 99999999988642 113444 6788899999999999 8889999999999998764
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-21 Score=165.32 Aligned_cols=155 Identities=12% Similarity=0.083 Sum_probs=120.4
Q ss_pred ceEEEEcCCCCeE-EEEeCCCcEEEEEeecCCCCceeecc---c----eeeEEEeeccceee-----eEEEEe--eCCc-
Q psy13856 67 NKAGALSPKLNRS-ATSSFHEAAKHLGTVQSSSPACLQPK---Y----FKLTVYSTKLTRIL-----ILVRIC--GGDK- 130 (271)
Q Consensus 67 i~~~~~s~~~~~l-~s~s~d~~i~~~d~~~~~~~~~~~~~---~----~~~~~~~~~~~~l~-----~~v~i~--~~~~- 130 (271)
|.+++|+|++++| ++++.|+.|++|+... ..+.++... . .....++.+++.++ +.+.+. ....
T Consensus 105 v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~-~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~ 183 (450)
T 2vdu_B 105 IRNLRLTSDESRLIACADSDKSLLVFDVDK-TSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPE 183 (450)
T ss_dssp EEEEEECTTSSEEEEEEGGGTEEEEEEECS-SSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCC
T ss_pred eEEEEEcCCCCEEEEEECCCCeEEEEECcC-CCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccc
Confidence 8999999999996 8999999999999930 045555443 1 23455666777777 556661 2221
Q ss_pred eE-EeEEecCCCcceEEEEEccCCCCC---CcEEEEEeCCCeEEEEEcCCCceeeeee-eccCCCCeEEEEEecCCCEEE
Q psy13856 131 WI-EETKLENHSDWVRDVAWAPSWGLS---KCMIASCSQDRKVIIWTSNDYVTWTPFI-MNTFDDVVWNVSWSLTGDILT 205 (271)
Q Consensus 131 ~~-~~~~~~~h~~~v~~v~~~p~~~~~---~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~h~~~v~~v~~~~~g~~l~ 205 (271)
.. ....+.+|...|.+++|+| + +.+|++|+.|+.|++||++++.. ... +.+|...|.+++|+ ++.+|+
T Consensus 184 ~~~~~~~~~~h~~~v~~~~~sp----~~~~~~~l~s~~~d~~i~vwd~~~~~~--~~~~~~~h~~~v~~~~~s-d~~~l~ 256 (450)
T 2vdu_B 184 EKFTQEPILGHVSMLTDVHLIK----DSDGHQFIITSDRDEHIKISHYPQCFI--VDKWLFGHKHFVSSICCG-KDYLLL 256 (450)
T ss_dssp SSCCCCCSEECSSCEEEEEEEE----CTTSCEEEEEEETTSCEEEEEESCTTC--EEEECCCCSSCEEEEEEC-STTEEE
T ss_pred ccccceeeecccCceEEEEEcC----CCCCCcEEEEEcCCCcEEEEECCCCce--eeeeecCCCCceEEEEEC-CCCEEE
Confidence 01 3336778999999999999 7 88999999999999999998775 444 66899999999999 999999
Q ss_pred EEECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 206 VSCGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 206 s~s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
+++.|+.|++||++++ +++..+..
T Consensus 257 s~~~d~~v~vwd~~~~---~~~~~~~~ 280 (450)
T 2vdu_B 257 SAGGDDKIFAWDWKTG---KNLSTFDY 280 (450)
T ss_dssp EEESSSEEEEEETTTC---CEEEEEEC
T ss_pred EEeCCCeEEEEECCCC---cEeeeecc
Confidence 9999999999999877 45555543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-20 Score=165.24 Aligned_cols=189 Identities=14% Similarity=0.119 Sum_probs=150.4
Q ss_pred ecccCCCC--CCCEEEEccCCCeEEeccc-------------eeeeccccccccccceEEEEcCCCCeEEEEeCC----C
Q psy13856 26 TYTESPLR--IGHTLISCDTQAHIGIRST-------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH----E 86 (271)
Q Consensus 26 ~~~~~~~~--~g~~l~s~s~d~~i~lwd~-------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d----~ 86 (271)
+......| ++++|++|+.||.|++||+ ...+..|... |.+++|+|++++|++++.+ +
T Consensus 67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~~~~~~~~~~ 142 (615)
T 1pgu_A 67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP----ISDISWDFEGRRLCVVGEGRDNFG 142 (615)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSC----EEEEEECTTSSEEEEEECCSSCSE
T ss_pred EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhccccc----EEEEEEeCCCCEEEEeccCCCCcc
Confidence 34444557 9999999999999999998 2345667888 9999999999999999988 6
Q ss_pred cEEEEEeecCCCCceeecc-----ceeeEEEeeccc-eee-----eEEEEeeCCceEEeEEecCCCc---ceEEEEEccC
Q psy13856 87 AAKHLGTVQSSSPACLQPK-----YFKLTVYSTKLT-RIL-----ILVRICGGDKWIEETKLENHSD---WVRDVAWAPS 152 (271)
Q Consensus 87 ~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~-~l~-----~~v~i~~~~~~~~~~~~~~h~~---~v~~v~~~p~ 152 (271)
.|++|+. ++..... ......++.++. .++ +.+++.+....+....+.+|.. .|.+++|+|
T Consensus 143 ~v~~~d~-----~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~- 216 (615)
T 1pgu_A 143 VFISWDS-----GNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP- 216 (615)
T ss_dssp EEEETTT-----CCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECS-
T ss_pred EEEEEEC-----CCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECC-
Confidence 8888884 2233222 224445556665 444 7888844344478888999999 999999999
Q ss_pred CCCC-CcEEEEEeCCCeEEEEEcCCCceeeeeee-c---cCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEE
Q psy13856 153 WGLS-KCMIASCSQDRKVIIWTSNDYVTWTPFIM-N---TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCI 227 (271)
Q Consensus 153 ~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~---~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~ 227 (271)
+ +.+|++++.|+.|++||+++++. ...+ . .|...|.+++|+ ++.+|++++.|+.|++||++++ +.+
T Consensus 217 ---~~~~~l~~~~~dg~i~vwd~~~~~~--~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~---~~~ 287 (615)
T 1pgu_A 217 ---DSGEFVITVGSDRKISCFDGKSGEF--LKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS---KCV 287 (615)
T ss_dssp ---TTCCEEEEEETTCCEEEEETTTCCE--EEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT---EEE
T ss_pred ---CCCCEEEEEeCCCeEEEEECCCCCE--eEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC---cEE
Confidence 6 99999999999999999998876 5555 5 899999999999 9999999999999999999876 556
Q ss_pred EEeccc
Q psy13856 228 TEMGKT 233 (271)
Q Consensus 228 ~~~~~~ 233 (271)
..+..+
T Consensus 288 ~~~~~~ 293 (615)
T 1pgu_A 288 QKWTLD 293 (615)
T ss_dssp EEEECC
T ss_pred EEEcCC
Confidence 666554
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.88 E-value=5.7e-21 Score=162.87 Aligned_cols=188 Identities=13% Similarity=0.133 Sum_probs=141.0
Q ss_pred ecccCCCCC-CCEEEEccCCCeEEeccc---------------eeeeccccccccccceEEEEcCCCC-eEEEEeCCCcE
Q psy13856 26 TYTESPLRI-GHTLISCDTQAHIGIRST---------------ISLLQGSVYLRRESNKAGALSPKLN-RSATSSFHEAA 88 (271)
Q Consensus 26 ~~~~~~~~~-g~~l~s~s~d~~i~lwd~---------------~~~~~~h~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i 88 (271)
+......|+ +.+|++++.||.|++|++ +..+.+|... |.+++|+|++. +|++|+.|+.|
T Consensus 131 v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~----v~~l~~~~~~~~~l~s~~~dg~i 206 (430)
T 2xyi_A 131 VNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKE----GYGLSWNPNLNGYLLSASDDHTI 206 (430)
T ss_dssp CSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSC----CCCEEECTTSTTEEEEECTTSCE
T ss_pred EEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCC----eEEEEeCCCCCCeEEEEeCCCeE
Confidence 333444455 679999999999999997 3445688888 99999999988 99999999999
Q ss_pred EEEEeecCCCC-ce---eecc-c----eeeEEEee-ccceee-----eEEEEeeCCc---eEEeEEecCCCcceEEEEEc
Q psy13856 89 KHLGTVQSSSP-AC---LQPK-Y----FKLTVYST-KLTRIL-----ILVRICGGDK---WIEETKLENHSDWVRDVAWA 150 (271)
Q Consensus 89 ~~~d~~~~~~~-~~---~~~~-~----~~~~~~~~-~~~~l~-----~~v~i~~~~~---~~~~~~~~~h~~~v~~v~~~ 150 (271)
++|++..+... .. .... . .....++. ....++ +.|++.+... ......+..|...|.+++|+
T Consensus 207 ~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~ 286 (430)
T 2xyi_A 207 CLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFN 286 (430)
T ss_dssp EEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEEC
T ss_pred EEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeC
Confidence 99998421111 11 1111 1 23344555 345555 7888822111 14566777899999999999
Q ss_pred cCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCC-EEEEEECCCcEEEEEeCCC
Q psy13856 151 PSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGD-ILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 151 p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s~D~~v~iw~~~~~ 221 (271)
|. ...++++|+.||.|++||++..... ...+..|...|.+++|+|++. +|++++.|+.|+|||+...
T Consensus 287 p~---~~~~l~tg~~dg~v~vwd~~~~~~~-~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 287 PY---SEFILATGSADKTVALWDLRNLKLK-LHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp SS---CTTEEEEEETTSEEEEEETTCTTSC-SEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred CC---CCCEEEEEeCCCeEEEEeCCCCCCC-eEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 95 3447999999999999999984321 667788999999999999984 7999999999999999863
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.7e-21 Score=164.79 Aligned_cols=172 Identities=5% Similarity=0.013 Sum_probs=132.5
Q ss_pred CCCCCEEEEccCCCeEEeccc-----eeeecc--ccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 32 LRIGHTLISCDTQAHIGIRST-----ISLLQG--SVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 32 ~~~g~~l~s~s~d~~i~lwd~-----~~~~~~--h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
.+++.+|++|+.|+.|++||+ +..+.. |... |.+++|+|++++|++|+.|+.|++||+ +.+.++..
T Consensus 179 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~----v~~~~~s~~~~~l~s~~~dg~i~iwd~---~~~~~~~~ 251 (437)
T 3gre_A 179 NEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGA----VSSICIDEECCVLILGTTRGIIDIWDI---RFNVLIRS 251 (437)
T ss_dssp CSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCC----EEEEEECTTSCEEEEEETTSCEEEEET---TTTEEEEE
T ss_pred cCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCc----eEEEEECCCCCEEEEEcCCCeEEEEEc---CCccEEEE
Confidence 367899999999999999998 566666 7888 999999999999999999999999999 66777664
Q ss_pred c--ceeeEEEee--------ccceee-----eEEEEeeCCceEEeEEecC--------------------------CCcc
Q psy13856 105 K--YFKLTVYST--------KLTRIL-----ILVRICGGDKWIEETKLEN--------------------------HSDW 143 (271)
Q Consensus 105 ~--~~~~~~~~~--------~~~~l~-----~~v~i~~~~~~~~~~~~~~--------------------------h~~~ 143 (271)
. .....+.+. ++..++ +.|++++....+....+.+ |...
T Consensus 252 ~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 331 (437)
T 3gre_A 252 WSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNA 331 (437)
T ss_dssp EBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGG
T ss_pred EecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCc
Confidence 4 222222222 244666 7888832221145555543 5566
Q ss_pred eEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeecc------------------------------------
Q psy13856 144 VRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT------------------------------------ 187 (271)
Q Consensus 144 v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------------------------------------ 187 (271)
|.+++|++ +.+|++|+.|+.|++||+.+++. ...+.+
T Consensus 332 v~~l~~~~-----~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 404 (437)
T 3gre_A 332 LSTISVSN-----DKILLTDEATSSIVMFSLNELSS--SKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSL 404 (437)
T ss_dssp GCCEEEET-----TEEEEEEGGGTEEEEEETTCGGG--CEEEECC--CCCEEEEEEEETTEEEEEEECC-----------
T ss_pred eEEEEECC-----ceEEEecCCCCeEEEEECCCccc--ceEEecccccCceEEEEEeecceEEEEEecccccccccCccc
Confidence 88888884 58999999999999999988764 233322
Q ss_pred -CCCCeEEEEEecC--CCEEEEEECCCcEEEEE
Q psy13856 188 -FDDVVWNVSWSLT--GDILTVSCGDNSVSLWK 217 (271)
Q Consensus 188 -h~~~v~~v~~~~~--g~~l~s~s~D~~v~iw~ 217 (271)
|.+.|++++|+++ +.+|++|+.||.|+||+
T Consensus 405 ~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 405 YHHDIINSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp --CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred ccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 8899999999998 78999999999999995
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-20 Score=157.90 Aligned_cols=184 Identities=11% Similarity=0.023 Sum_probs=136.1
Q ss_pred cccCCCC-CCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCC---CCeEEEEeCCCcEEEEEeecCCC
Q psy13856 27 YTESPLR-IGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPK---LNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 27 ~~~~~~~-~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~---~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
......| ++.+|++++.|+.|++||+ ......+... +.++.|+|. +.++++++.|+.|++||. .+
T Consensus 103 ~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~---~~ 175 (408)
T 4a11_B 103 ETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEET----VYSHHMSPVSTKHCLVAVGTRGPKVQLCDL---KS 175 (408)
T ss_dssp EEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSC----EEEEEECSSCSSCCEEEEEESSSSEEEEES---SS
T ss_pred EEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCc----eeeeEeecCCCCCcEEEEEcCCCeEEEEeC---CC
Confidence 3334456 6779999999999999998 2222335666 889999984 459999999999999999 44
Q ss_pred Cceeecc-----ceeeEEEeeccce-ee-----eEEEEeeC-CceEEeEEe---------------cCCCcceEEEEEcc
Q psy13856 99 PACLQPK-----YFKLTVYSTKLTR-IL-----ILVRICGG-DKWIEETKL---------------ENHSDWVRDVAWAP 151 (271)
Q Consensus 99 ~~~~~~~-----~~~~~~~~~~~~~-l~-----~~v~i~~~-~~~~~~~~~---------------~~h~~~v~~v~~~p 151 (271)
+...... ......++.++.. ++ +.+++.+. ........+ .+|...|.+++|+|
T Consensus 176 ~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 255 (408)
T 4a11_B 176 GSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTS 255 (408)
T ss_dssp SCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECT
T ss_pred cceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcC
Confidence 4444333 2234455666664 54 67777211 110123333 57889999999999
Q ss_pred CCCCCCcEEEEEeCCCeEEEEEcCCCce---------------------------------------------eeeeeec
Q psy13856 152 SWGLSKCMIASCSQDRKVIIWTSNDYVT---------------------------------------------WTPFIMN 186 (271)
Q Consensus 152 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------------------------------------------~~~~~~~ 186 (271)
++.+|++++.||.|++||++++.. .....+.
T Consensus 256 ----~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 331 (408)
T 4a11_B 256 ----DGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK 331 (408)
T ss_dssp ----TSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC
T ss_pred ----CCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec
Confidence 699999999999999999976431 1134456
Q ss_pred cCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 187 TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 187 ~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+|...|.+++|+|++.+|++++.||.|++|++++.
T Consensus 332 ~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~ 366 (408)
T 4a11_B 332 GHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLY 366 (408)
T ss_dssp CCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-
T ss_pred cCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCC
Confidence 79999999999999999999999999999999876
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.6e-20 Score=156.13 Aligned_cols=172 Identities=15% Similarity=0.142 Sum_probs=126.0
Q ss_pred CCCCEE-EEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC-ceeecc
Q psy13856 33 RIGHTL-ISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP-ACLQPK 105 (271)
Q Consensus 33 ~~g~~l-~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~-~~~~~~ 105 (271)
++++.+ ++++.|++|++||. +..+. |... |.+++|+++. ++.+ .|+.+++||+ .+. +.+...
T Consensus 68 ~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~-~~~~----v~~v~~~~~~--~~~~-~~~~i~i~d~---~~~~~~~~~~ 136 (355)
T 3vu4_A 68 HRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK-VDAP----VKDLFLSREF--IVVS-YGDVISVFKF---GNPWKRITDD 136 (355)
T ss_dssp TTSSEEEEECSSTTEEEEEETTTTEEEEEEE-CSSC----EEEEEECSSE--EEEE-ETTEEEEEES---STTCCBSSCC
T ss_pred CCCCEEEEEECCccEEEEEECCCCcEEEEEE-CCCc----eEEEEEcCCE--EEEE-EcCEEEEEEC---CCCceeeEEe
Confidence 455555 67888899999998 44444 5556 8999998764 4443 4789999998 444 343333
Q ss_pred ceeeEEEeeccceee-------eEEEEeeCCc---------------eEE-eEEecCCCcceEEEEEccCCCCCCcEEEE
Q psy13856 106 YFKLTVYSTKLTRIL-------ILVRICGGDK---------------WIE-ETKLENHSDWVRDVAWAPSWGLSKCMIAS 162 (271)
Q Consensus 106 ~~~~~~~~~~~~~l~-------~~v~i~~~~~---------------~~~-~~~~~~h~~~v~~v~~~p~~~~~~~~l~s 162 (271)
..+..+.......++ +.|++.+... ..+ ...+.+|.+.|.+++|+| ++.+|++
T Consensus 137 ~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~----~g~~l~s 212 (355)
T 3vu4_A 137 IRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR----KSDMVAT 212 (355)
T ss_dssp EEEEEEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT----TSSEEEE
T ss_pred ccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC----CCCEEEE
Confidence 212222222223333 5666621111 012 678899999999999999 7999999
Q ss_pred EeCCCe-EEEEEcCCCceeeeeeec-c-CCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 163 CSQDRK-VIIWTSNDYVTWTPFIMN-T-FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 163 ~~~dg~-i~iwd~~~~~~~~~~~~~-~-h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
|+.|++ |++||+++++. ...+. + |...|++++|+|+|.+|++++.|++|++||++..
T Consensus 213 ~s~d~~~v~iwd~~~~~~--~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~ 272 (355)
T 3vu4_A 213 CSQDGTIIRVFKTEDGVL--VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND 272 (355)
T ss_dssp EETTCSEEEEEETTTCCE--EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred EeCCCCEEEEEECCCCcE--EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence 999998 99999999886 56665 5 9999999999999999999999999999999754
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.5e-20 Score=160.34 Aligned_cols=181 Identities=14% Similarity=0.138 Sum_probs=144.7
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-ce
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-YF 107 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~~ 107 (271)
++++|++|+.||.|++||. ...+.+|... |.+++| +++.|++|+.|+.|++||. .++++.... .+
T Consensus 142 d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~----v~~l~~--~~~~l~sg~~dg~i~vwd~---~~~~~~~~~~~h 212 (435)
T 1p22_A 142 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS----VLCLQY--DERVIITGSSDSTVRVWDV---NTGEMLNTLIHH 212 (435)
T ss_dssp CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSC----EEEEEC--CSSEEEEEETTSCEEEEES---SSCCEEEEECCC
T ss_pred CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCc----EEEEEE--CCCEEEEEcCCCeEEEEEC---CCCcEEEEEcCC
Confidence 8999999999999999998 6778899999 999998 7889999999999999999 666666554 22
Q ss_pred ee--EEEeeccceee-----eEEEE--eeCC-ceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC
Q psy13856 108 KL--TVYSTKLTRIL-----ILVRI--CGGD-KWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY 177 (271)
Q Consensus 108 ~~--~~~~~~~~~l~-----~~v~i--~~~~-~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 177 (271)
.. ......+..++ +.|++ ...+ .......+.+|...|.+++|+ +.++++|+.||.|++||++++
T Consensus 213 ~~~v~~l~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~------~~~l~s~~~dg~i~vwd~~~~ 286 (435)
T 1p22_A 213 CEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD------DKYIVSASGDRTIKVWNTSTC 286 (435)
T ss_dssp CSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE------TTEEEEEETTSEEEEEETTTC
T ss_pred CCcEEEEEEcCCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC------CCEEEEEeCCCeEEEEECCcC
Confidence 22 22222344555 77787 2222 223446788999999999994 579999999999999999998
Q ss_pred ceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchh
Q psy13856 178 VTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 178 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
.. ...+.+|...|.+++|+ +.++++|+.|+.|++||++++ +++..+.+|...
T Consensus 287 ~~--~~~~~~~~~~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~ 338 (435)
T 1p22_A 287 EF--VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEEL 338 (435)
T ss_dssp CE--EEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSC
T ss_pred cE--EEEEcCCCCcEEEEEeC--CCEEEEEeCCCeEEEEECCCC---CEEEEEeCCcCc
Confidence 76 77788999999999984 689999999999999999877 666677666543
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.2e-21 Score=169.93 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=124.8
Q ss_pred CCEEEEccC-CCeEEeccc----e--eeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccce
Q psy13856 35 GHTLISCDT-QAHIGIRST----I--SLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF 107 (271)
Q Consensus 35 g~~l~s~s~-d~~i~lwd~----~--~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~ 107 (271)
+.+|++++. |+.|++||+ . ..+.+|... |.+++|+|++++|++++.|+.|++|+. .
T Consensus 456 ~~~l~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~g~~l~~~~~dg~i~iw~~---~---------- 518 (615)
T 1pgu_A 456 QNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK----PSYISISPSETYIAAGDVMGKILLYDL---Q---------- 518 (615)
T ss_dssp SSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSC----EEEEEECTTSSEEEEEETTSCEEEEET---T----------
T ss_pred CCEEEEeecCCCeEEEEECCCccccccccCCccCc----eEEEEECCCCCEEEEcCCCCeEEEeeC---C----------
Confidence 789999999 999999999 2 567788888 999999999999999999999999998 2
Q ss_pred eeEEEeeccceeeeEEEEeeCCceEEeEEecC-CCcceEEEEEccCC------CCCCcEEEEEeCCCeEEEEEcCCC-ce
Q psy13856 108 KLTVYSTKLTRILILVRICGGDKWIEETKLEN-HSDWVRDVAWAPSW------GLSKCMIASCSQDRKVIIWTSNDY-VT 179 (271)
Q Consensus 108 ~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~-h~~~v~~v~~~p~~------~~~~~~l~s~~~dg~i~iwd~~~~-~~ 179 (271)
.+ +.+..+.+ |...|.+++|+|.. +.++.+|++++.||.|++||+.++ ..
T Consensus 519 --------------------~~--~~~~~~~~~h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~ 576 (615)
T 1pgu_A 519 --------------------SR--EVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKI 576 (615)
T ss_dssp --------------------TT--EEEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCC
T ss_pred --------------------CC--cceeEeecCCCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCcee
Confidence 23 45556667 99999999999910 002899999999999999999987 44
Q ss_pred eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 180 WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 180 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
...+.+|...|++++|+|++. |++++.|+.|++|+++.
T Consensus 577 --~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 577 --IKALNAHKDGVNNLLWETPST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp --EEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC-
T ss_pred --chhhhcCccceEEEEEcCCCC-eEEecCCceEEEEeeec
Confidence 677889999999999999999 99999999999999874
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-20 Score=161.10 Aligned_cols=185 Identities=10% Similarity=0.122 Sum_probs=145.4
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCcee---ecc
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACL---QPK 105 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~---~~~ 105 (271)
++.+|++|+.||.|++||+ +..+.+|... |.+++|++ ..+++|+.|+.|++||.. ++... ...
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~----v~~l~~~~--~~l~s~s~dg~i~vwd~~---~~~~~~~~~~~ 252 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEA----VLHLRFNN--GMMVTCSKDRSIAVWDMA---SPTDITLRRVL 252 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSC----EEEEECCT--TEEEEEETTSCEEEEECS---SSSCCEEEEEE
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCc----EEEEEEcC--CEEEEeeCCCcEEEEeCC---CCCCceeeeEe
Confidence 8899999999999999998 6778899998 99999974 599999999999999984 33332 222
Q ss_pred -ce--eeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC
Q psy13856 106 -YF--KLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY 177 (271)
Q Consensus 106 -~~--~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 177 (271)
.+ .......+++.++ +.+++.+....+.+..+.+|...|.++.+++ .++++|+.||.|++||++++
T Consensus 253 ~~~~~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~------~~l~~g~~dg~i~iwd~~~~ 326 (435)
T 1p22_A 253 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD------RLVVSGSSDNTIRLWDIECG 326 (435)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEET------TEEEEEETTSCEEEEETTTC
T ss_pred cCCCCcEEEEEeCCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEeCC------CEEEEEeCCCeEEEEECCCC
Confidence 22 2222233566666 7888833333378888999999999999954 69999999999999999998
Q ss_pred ceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCc------eeEEEEecccchhh
Q psy13856 178 VTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGA------WQCITEMGKTSEQR 237 (271)
Q Consensus 178 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~------~~~~~~~~~~~~~~ 237 (271)
.. ...+.+|...|.+++| ++.+|++|+.||.|++||+..+.. ..++..+.+|....
T Consensus 327 ~~--~~~~~~h~~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v 388 (435)
T 1p22_A 327 AC--LRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRV 388 (435)
T ss_dssp CE--EEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCC
T ss_pred CE--EEEEeCCcCcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCe
Confidence 86 7788899999999999 788999999999999999965421 11566676665543
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.6e-22 Score=169.86 Aligned_cols=179 Identities=8% Similarity=0.048 Sum_probs=122.4
Q ss_pred CCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccce--
Q psy13856 34 IGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF-- 107 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~-- 107 (271)
++.+|++|+.|++|++||+ ...+..+.. ....+.+++|+|++++|++|+.|+.|++||. ..........+
T Consensus 176 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~---~~~~~~~~~~h~~ 251 (435)
T 4e54_B 176 NTNQFYASSMEGTTRLQDFKGNILRVFASSDT-INIWFCSLDVSASSRMVVTGDNVGNVILLNM---DGKELWNLRMHKK 251 (435)
T ss_dssp CTTEEEEECSSSCEEEEETTSCEEEEEECCSS-CSCCCCCEEEETTTTEEEEECSSSBEEEEES---SSCBCCCSBCCSS
T ss_pred CCCEEEEEeCCCEEEEeeccCCceeEEeccCC-CCccEEEEEECCCCCEEEEEeCCCcEeeecc---CcceeEEEecccc
Confidence 7889999999999999998 333322221 1112778999999999999999999999997 33222222222
Q ss_pred --eeEEEeeccc-eee-----eEEEEee--CC-ceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC
Q psy13856 108 --KLTVYSTKLT-RIL-----ILVRICG--GD-KWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 108 --~~~~~~~~~~-~l~-----~~v~i~~--~~-~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 176 (271)
....+++.+. .++ +.|++++ .. .........+|...|.+++|+| ++.+|++|+.|+.|++||+++
T Consensus 252 ~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~sp----dg~~l~s~~~D~~i~iwd~~~ 327 (435)
T 4e54_B 252 KVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSP----DGARLLTTDQKSEIRVYSASQ 327 (435)
T ss_dssp CEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCT----TSSEEEEEESSSCEEEEESSS
T ss_pred eEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECC----CCCeeEEEcCCCEEEEEECCC
Confidence 3344444544 344 6677722 11 0112233457999999999999 699999999999999999875
Q ss_pred Ccee-----------------------------------------------eee------------eeccCCCCeEEE-E
Q psy13856 177 YVTW-----------------------------------------------TPF------------IMNTFDDVVWNV-S 196 (271)
Q Consensus 177 ~~~~-----------------------------------------------~~~------------~~~~h~~~v~~v-~ 196 (271)
+... .+. ...+|...|.++ +
T Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~ 407 (435)
T 4e54_B 328 WDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNE 407 (435)
T ss_dssp SSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEE
T ss_pred CccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEE
Confidence 3210 000 112455667776 6
Q ss_pred EecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 197 WSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 197 ~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
|+|+|.+|++|+ |++|+||+++.+
T Consensus 408 fspdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 408 FNPMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp ECTTSSCEEEEC-SSEEEECCCC--
T ss_pred ECCCCCEEEEEc-CCcEEEEECCcC
Confidence 999999998876 789999998865
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.8e-21 Score=163.36 Aligned_cols=179 Identities=9% Similarity=0.104 Sum_probs=134.6
Q ss_pred cCCCCCC--CEEEEccCCCeEEeccc-e--------------------------------------------eeeccccc
Q psy13856 29 ESPLRIG--HTLISCDTQAHIGIRST-I--------------------------------------------SLLQGSVY 61 (271)
Q Consensus 29 ~~~~~~g--~~l~s~s~d~~i~lwd~-~--------------------------------------------~~~~~h~~ 61 (271)
....|++ ..|++++.|+.|++||+ . ....+|..
T Consensus 99 l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~ 178 (447)
T 3dw8_B 99 IRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTY 178 (447)
T ss_dssp EEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSS
T ss_pred EEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCc
Confidence 3344566 78999999999999998 1 11367888
Q ss_pred cccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeec--------cc----eeeEEEeecc-ceee-----eEE
Q psy13856 62 LRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQP--------KY----FKLTVYSTKL-TRIL-----ILV 123 (271)
Q Consensus 62 ~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~--------~~----~~~~~~~~~~-~~l~-----~~v 123 (271)
. |.+++|+|++++|++| .|+.|++||+. ....++.. .. .....+++++ ..++ +.|
T Consensus 179 ~----v~~~~~~~~~~~l~s~-~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i 251 (447)
T 3dw8_B 179 H----INSISINSDYETYLSA-DDLRINLWHLE--ITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTI 251 (447)
T ss_dssp C----CCEEEECTTSSEEEEE-CSSEEEEEETT--EEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCE
T ss_pred c----eEEEEEcCCCCEEEEe-CCCeEEEEECC--CCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeE
Confidence 8 9999999999999998 89999999983 13333331 11 2445566666 6666 778
Q ss_pred EEeeCCceEE----eEEecCCCc------------ceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC-Cceeeeeeec
Q psy13856 124 RICGGDKWIE----ETKLENHSD------------WVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND-YVTWTPFIMN 186 (271)
Q Consensus 124 ~i~~~~~~~~----~~~~~~h~~------------~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~ 186 (271)
++.+...... ...+.+|.. .|.+++|+| ++.+|++++. +.|++||++. +.. ...+.
T Consensus 252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~----~g~~l~~~~~-~~v~iwd~~~~~~~--~~~~~ 324 (447)
T 3dw8_B 252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSH----SGRYMMTRDY-LSVKVWDLNMENRP--VETYQ 324 (447)
T ss_dssp EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECT----TSSEEEEEES-SEEEEEETTCCSSC--SCCEE
T ss_pred EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECC----CCCEEEEeeC-CeEEEEeCCCCccc--cceee
Confidence 8822221133 577777776 899999999 6999999998 9999999987 554 55666
Q ss_pred cCCCC---------------eEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 187 TFDDV---------------VWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 187 ~h~~~---------------v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+|... +..++|+|++.+|++++.|+.|++||+.++
T Consensus 325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 67532 334999999999999999999999999876
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.8e-20 Score=159.23 Aligned_cols=183 Identities=15% Similarity=0.154 Sum_probs=139.5
Q ss_pred CCEEEEccCCCeEEeccc-----ee--eeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-c
Q psy13856 35 GHTLISCDTQAHIGIRST-----IS--LLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-Y 106 (271)
Q Consensus 35 g~~l~s~s~d~~i~lwd~-----~~--~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~ 106 (271)
+++|++|. |++|+|||. .. .+.+|... |++++|+|+|++|++|+.|+.|++||. .+++++... .
T Consensus 116 ~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~----V~sv~fspdg~~lasgs~Dg~v~iWd~---~~~~~~~~~~~ 187 (420)
T 4gga_A 116 GNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEY----ISSVAWIKEGNYLAVGTSSAEVQLWDV---QQQKRLRNMTS 187 (420)
T ss_dssp TSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCC----EEEEEECTTSSEEEEEETTSCEEEEET---TTTEEEEEECC
T ss_pred CCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCc----EEEEEECCCCCEEEEEECCCeEEEEEc---CCCcEEEEEeC
Confidence 34666664 899999998 33 34577788 999999999999999999999999999 777776655 2
Q ss_pred e--eeEEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc
Q psy13856 107 F--KLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV 178 (271)
Q Consensus 107 ~--~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 178 (271)
+ .....+.++..++ +.+++ ........+..+.+|...+..+.|+| ++.++++++.|+.+++|+...++
T Consensus 188 h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~----~g~~l~s~~~D~~v~i~~~~~~~ 263 (420)
T 4gga_A 188 HSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP----DGRHLASGGNDNLVNVWPSAPGE 263 (420)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT----TSSEEEEEETTSCEEEEESSCCS
T ss_pred CCCceEEEeeCCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecC----CCCeeeeeeccccceEEeecccc
Confidence 2 2333344466666 66666 32222356778899999999999999 69999999999999999998765
Q ss_pred e--eeeeeeccCCCCeEEEEEecCC-CEEEEE--ECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 179 T--WTPFIMNTFDDVVWNVSWSLTG-DILTVS--CGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 179 ~--~~~~~~~~h~~~v~~v~~~~~g-~~l~s~--s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
. ........|...|.+++|+|.+ .+++++ +.|++|++||+.++ .+...+..
T Consensus 264 ~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~ 319 (420)
T 4gga_A 264 GGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDA 319 (420)
T ss_dssp SCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEEC
T ss_pred ccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeecc
Confidence 2 1245667899999999999965 556554 46999999999877 44444443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.3e-21 Score=165.89 Aligned_cols=161 Identities=9% Similarity=0.099 Sum_probs=123.6
Q ss_pred cceecccCCCCCCCEEEEccCCCeEEeccc---eeeecccccc-ccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 23 EIETYTESPLRIGHTLISCDTQAHIGIRST---ISLLQGSVYL-RRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 23 ~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~---~~~~~~h~~~-~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
+..+..+.+.|||+.||+++.||.|++||. +..+. |... ....+.+++|||||++|++|+.||+|++|+. ..
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~---~~ 160 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSI---RK 160 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEEC---CC
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEEC---CC
Confidence 445666777789999999999999999997 45555 5431 1123889999999999999999999999998 33
Q ss_pred CceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEe----cCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEc
Q psy13856 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKL----ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTS 174 (271)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~----~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~ 174 (271)
+.... ..+..+..+ .+|.++|.+++|+| ++ +++++.|+.+++||+
T Consensus 161 ~~l~~-------------------------~~~i~l~ti~~~~~gh~~~V~sVawSP----dg--Laass~D~tVrlWd~ 209 (588)
T 2j04_A 161 NSENT-------------------------PEFYFESSIRLSDAGSKDWVTHIVWYE----DV--LVAALSNNSVFSMTV 209 (588)
T ss_dssp CTTTC-------------------------CCCEEEEEEECSCTTCCCCEEEEEEET----TE--EEEEETTCCEEEECC
T ss_pred Ccccc-------------------------ccceeeeeeecccccccccEEEEEEcC----Cc--EEEEeCCCeEEEEEC
Confidence 22100 001133443 67889999999999 57 888999999999999
Q ss_pred CCCcee-eeeee-ccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 175 NDYVTW-TPFIM-NTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 175 ~~~~~~-~~~~~-~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
...... ....+ .+|...|.+++|+ |..||+++ |++|++|++..+
T Consensus 210 ~~~~~~~~~~tL~~~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~ 255 (588)
T 2j04_A 210 SASSHQPVSRMIQNASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNY 255 (588)
T ss_dssp CSSSSCCCEEEEECCCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTT
T ss_pred CCCccccceeeecccccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCC
Confidence 876631 02345 4788999999999 68999997 699999998865
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.7e-20 Score=160.36 Aligned_cols=181 Identities=15% Similarity=0.202 Sum_probs=145.9
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-c
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-Y 106 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~ 106 (271)
++|++|++|+.||.|++||. +..+.+|... |.+++|+ ++.+++|+.|++|++||. .++++.... .
T Consensus 127 ~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~----v~~~~~~--~~~l~s~~~dg~i~vwd~---~~~~~~~~~~~ 197 (445)
T 2ovr_B 127 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG----VWSSQMR--DNIIISGSTDRTLKVWNA---ETGECIHTLYG 197 (445)
T ss_dssp EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSC----EEEEEEE--TTEEEEEETTSCEEEEET---TTTEEEEEECC
T ss_pred EcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCC----EEEEEec--CCEEEEEeCCCeEEEEEC---CcCcEEEEECC
Confidence 47899999999999999998 6778899999 9999997 579999999999999998 666666554 2
Q ss_pred e--eeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce
Q psy13856 107 F--KLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT 179 (271)
Q Consensus 107 ~--~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 179 (271)
+ ........+..++ +.+++.+....+....+.+|...|.+++|+ +.++++|+.||.|++||.+++..
T Consensus 198 h~~~v~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~~------~~~l~~~~~dg~i~iwd~~~~~~ 271 (445)
T 2ovr_B 198 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD------GRRVVSGAYDFMVKVWDPETETC 271 (445)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC------SSCEEEEETTSCEEEEEGGGTEE
T ss_pred CCCcEEEEEecCCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEEC------CCEEEEEcCCCEEEEEECCCCcE
Confidence 2 2222223355555 788883222226778888999999999993 57899999999999999998776
Q ss_pred eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccch
Q psy13856 180 WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSE 235 (271)
Q Consensus 180 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 235 (271)
...+.+|...|.+++| ++.++++++.|+.|++||++++ +++..+.++..
T Consensus 272 --~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~ 320 (445)
T 2ovr_B 272 --LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQS 320 (445)
T ss_dssp --EEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCS
T ss_pred --eEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcc
Confidence 6778899999999999 7889999999999999999876 55566655543
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-21 Score=185.42 Aligned_cols=183 Identities=13% Similarity=0.034 Sum_probs=152.3
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
......|++.++++|+.||.|++|+. ...+.+|... |.+++|+|+++++++++.|+.|++|+. .++.+
T Consensus 965 ~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~----v~~l~~s~dg~~l~s~~~dg~i~vwd~---~~~~~ 1037 (1249)
T 3sfz_A 965 SCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKA----VRHIQFTADGKTLISSSEDSVIQVWNW---QTGDY 1037 (1249)
T ss_dssp EEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSC----CCCEEECSSSSCEEEECSSSBEEEEET---TTTEE
T ss_pred EEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCc----eEEEEECCCCCEEEEEcCCCEEEEEEC---CCCce
Confidence 33444579999999999999999998 6677899999 999999999999999999999999998 66666
Q ss_pred eeccce----eeEEEeeccceee----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEE
Q psy13856 102 LQPKYF----KLTVYSTKLTRIL----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT 173 (271)
Q Consensus 102 ~~~~~~----~~~~~~~~~~~l~----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd 173 (271)
.....+ ....+..++..++ +.+++++....+....+.+|...|.+++|+| ++.++++++.|+.|++||
T Consensus 1038 ~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~s~----d~~~l~s~s~d~~v~iwd 1113 (1249)
T 3sfz_A 1038 VFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS----DATKFSSTSADKTAKIWS 1113 (1249)
T ss_dssp ECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEETTTTCCCEEEECCSSCCCCEEECS----SSSSCEEECCSSCCCEEC
T ss_pred EEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEECCCCceeEEEcccCCcEEEEEECC----CCCEEEEEcCCCcEEEEE
Confidence 544432 2333444444444 7888832222267788899999999999999 799999999999999999
Q ss_pred cCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 174 SNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 174 ~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
+.++.. ...+.+|...|++++|+|+|.+|++++.||.|++||+.++.
T Consensus 1114 ~~~~~~--~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~ 1160 (1249)
T 3sfz_A 1114 FDLLSP--LHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQ 1160 (1249)
T ss_dssp SSSSSC--SBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSC
T ss_pred CCCcce--eeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCc
Confidence 998876 67788999999999999999999999999999999998763
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-21 Score=163.60 Aligned_cols=173 Identities=9% Similarity=-0.001 Sum_probs=115.0
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCC-eEEEEeCCCcEEEEEeecCCCCceeecc-
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLN-RSATSSFHEAAKHLGTVQSSSPACLQPK- 105 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~~~d~~~~~~~~~~~~~- 105 (271)
.|+++|||||.|++|+|||+ ...+..|... +.+++|+|++. +|++++.|++|++||. .+++.....
T Consensus 154 ~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~----v~~v~~~p~~~~~l~~~~~d~~v~~wd~---~t~~~~~~~~ 226 (393)
T 4gq1_A 154 LAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSP----GISVQFRPSNPNQLIVGERNGNIRIFDW---TLNLSAEENS 226 (393)
T ss_dssp EEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSC----EEEEEEETTEEEEEEEEETTSEEEEEET---TCCC------
T ss_pred CCCCEEEEEECCCeEEEEECCCCceeeeecCCCCC----cEEEEECCCCCceEEecCCCCEEEEEEC---CCCccccccc
Confidence 38899999999999999998 5566788888 99999999874 8999999999999998 333222110
Q ss_pred -----------------------------ceeeEEEe-eccceee-----eEEEEe--eCCceEEeEEecCCCcceEE--
Q psy13856 106 -----------------------------YFKLTVYS-TKLTRIL-----ILVRIC--GGDKWIEETKLENHSDWVRD-- 146 (271)
Q Consensus 106 -----------------------------~~~~~~~~-~~~~~l~-----~~v~i~--~~~~~~~~~~~~~h~~~v~~-- 146 (271)
......+. .+++.++ +.++++ ..+ .....+..|...+..
T Consensus 227 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~--~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 227 QTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFAN--NDYNEISDSTMKLGPKN 304 (393)
T ss_dssp ----CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC---------------------C
T ss_pred ccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccC--CCCceEeeecCccccEE
Confidence 00111222 3455555 666662 122 223333333333332
Q ss_pred ----------------EEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC
Q psy13856 147 ----------------VAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD 210 (271)
Q Consensus 147 ----------------v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D 210 (271)
..|+|.. ++.++++|+.||.|++||..++.. .....+|..+|++++|+|+|++||+++.|
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~sgs~Dg~V~lwd~~~~~~--~~~~~~~~~~V~svafspdG~~LA~as~~ 380 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRY--MDYFATAHSQHGLIQLINTYEKDS--NSIPIQLGMPIVDFCWHQDGSHLAIATEG 380 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSC--TTEEEEEETTTTEEEEEETTCTTC--CEEEEECSSCEEEEEECTTSSEEEEEESS
T ss_pred EccccccccccCcceeEEEccCC--CCEEEEEECCCCEEEEEECCCCcE--EEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence 2333321 456788899999999999998876 56677888999999999999999999977
Q ss_pred CcEEEEEeC
Q psy13856 211 NSVSLWKEN 219 (271)
Q Consensus 211 ~~v~iw~~~ 219 (271)
| +.+|.+.
T Consensus 381 G-v~lvrL~ 388 (393)
T 4gq1_A 381 S-VLLTRLM 388 (393)
T ss_dssp E-EEEEEEG
T ss_pred C-eEEEEEe
Confidence 6 6677654
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.87 E-value=8.3e-21 Score=156.23 Aligned_cols=187 Identities=5% Similarity=-0.098 Sum_probs=141.2
Q ss_pred ccceecccCCCCCCCEEEEccCCCeEEeccc--------eeeeccccccccccceEEEEcCCCC-eEEEEeCCCcEEEEE
Q psy13856 22 LEIETYTESPLRIGHTLISCDTQAHIGIRST--------ISLLQGSVYLRRESNKAGALSPKLN-RSATSSFHEAAKHLG 92 (271)
Q Consensus 22 ~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~~~~-~l~s~s~d~~i~~~d 92 (271)
++-.+......|++.+|++++.|+.|++|++ ...+.+|... |.+++|+|+++ +|++|+.|+.|++|+
T Consensus 10 h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 10 PKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHP----LLCCNFIDNTDLQIYVGTVQGEILKVD 85 (342)
T ss_dssp CSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSC----EEEEEEEESSSEEEEEEETTSCEEEEC
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCc----eEEEEECCCCCcEEEEEcCCCeEEEEE
Confidence 3344555555679999999999999999998 3455688888 99999999999 999999999999999
Q ss_pred e-ecCCCCceeec--c--ceeeEEEeeccceee-----eEEEEeeCCc---------eEEeEEecCCCcceEEEEEccCC
Q psy13856 93 T-VQSSSPACLQP--K--YFKLTVYSTKLTRIL-----ILVRICGGDK---------WIEETKLENHSDWVRDVAWAPSW 153 (271)
Q Consensus 93 ~-~~~~~~~~~~~--~--~~~~~~~~~~~~~l~-----~~v~i~~~~~---------~~~~~~~~~h~~~v~~v~~~p~~ 153 (271)
. ..+.. ..+.. . ......+.. +..++ +.+++.+... .+.+..+. |...|.+++|+|.
T Consensus 86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~- 161 (342)
T 1yfq_A 86 LIGSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS- 161 (342)
T ss_dssp SSSSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS-
T ss_pred eccCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC-
Confidence 7 43221 11111 1 113334444 66666 7788822111 23444555 8899999999993
Q ss_pred CCCCcEEEEEeCCCeEEEEEcCC-CceeeeeeeccCCCCeEEEEEec-CCCEEEEEECCCcEEEEEeCCC
Q psy13856 154 GLSKCMIASCSQDRKVIIWTSND-YVTWTPFIMNTFDDVVWNVSWSL-TGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 154 ~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+ +++++.|+.|++||++. ...........|...+.+++|+| ++.++++++.||.|++|+++..
T Consensus 162 ---~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~ 226 (342)
T 1yfq_A 162 ---R--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226 (342)
T ss_dssp ---E--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTT
T ss_pred ---c--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCC
Confidence 4 99999999999999998 55322445567888999999999 9999999999999999999865
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=4.7e-20 Score=157.66 Aligned_cols=171 Identities=14% Similarity=0.123 Sum_probs=137.2
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-ce
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-YF 107 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~~ 107 (271)
++..+++|+.|+.|++||. +..+.+|... |.+++| ++.++++++.|+.|++||. .+++++... .+
T Consensus 248 ~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----v~~~~~--~~~~l~~~~~d~~i~i~d~---~~~~~~~~~~~~ 318 (445)
T 2ovr_B 248 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNR----VYSLQF--DGIHVVSGSLDTSIRVWDV---ETGNCIHTLTGH 318 (445)
T ss_dssp CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSC----EEEEEE--CSSEEEEEETTSCEEEEET---TTCCEEEEECCC
T ss_pred CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCc----eEEEEE--CCCEEEEEeCCCeEEEEEC---CCCCEEEEEcCC
Confidence 7888999999999999998 6677888888 999999 7889999999999999998 666666544 22
Q ss_pred --eeEEEeeccceee-----eEEEEeeCCceEEeEEecC---CCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC
Q psy13856 108 --KLTVYSTKLTRIL-----ILVRICGGDKWIEETKLEN---HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY 177 (271)
Q Consensus 108 --~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~---h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 177 (271)
.......+++.++ +.|++.+....+.+..+.+ |...|.+++|++ .++++|+.||.|++||+.++
T Consensus 319 ~~~v~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~l~s~~~dg~v~iwd~~~~ 392 (445)
T 2ovr_B 319 QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK------NFVITSSDDGTVKLWDLKTG 392 (445)
T ss_dssp CSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECS------SEEEEEETTSEEEEEETTTC
T ss_pred cccEEEEEEeCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEECC------CEEEEEeCCCeEEEEECCCC
Confidence 2233334566666 7788832222256777765 888999999965 69999999999999999998
Q ss_pred ceeeeeee-----ccCCCCeEEEEEecCCCEEEEEECCCc----EEEEEeCCC
Q psy13856 178 VTWTPFIM-----NTFDDVVWNVSWSLTGDILTVSCGDNS----VSLWKENTD 221 (271)
Q Consensus 178 ~~~~~~~~-----~~h~~~v~~v~~~~~g~~l~s~s~D~~----v~iw~~~~~ 221 (271)
+. ...+ .+|.+.|++++|+|++.++++|+.||+ |.+||++.+
T Consensus 393 ~~--~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 393 EF--IRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp CE--EEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCCC
T ss_pred ce--eeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCCC
Confidence 76 4444 477889999999999999999999998 999999865
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-19 Score=151.23 Aligned_cols=144 Identities=14% Similarity=0.098 Sum_probs=114.6
Q ss_pred CEEEE--ccCCCeEEeccc---------------------eeeeccccccccccceEEEEcCCCCeEEEEeCCCc-EEEE
Q psy13856 36 HTLIS--CDTQAHIGIRST---------------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEA-AKHL 91 (271)
Q Consensus 36 ~~l~s--~s~d~~i~lwd~---------------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~-i~~~ 91 (271)
.+++. |+.||.|++||+ +..+.+|... |.+++|+|++++|++|+.|++ |++|
T Consensus 148 ~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~----v~~~~~s~~g~~l~s~s~d~~~v~iw 223 (355)
T 3vu4_A 148 GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNP----IKMVRLNRKSDMVATCSQDGTIIRVF 223 (355)
T ss_dssp TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSC----EEEEEECTTSSEEEEEETTCSEEEEE
T ss_pred cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCc----eEEEEECCCCCEEEEEeCCCCEEEEE
Confidence 44444 789999999998 1457889999 999999999999999999998 9999
Q ss_pred EeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEec-C-CCcceEEEEEccCCCCCCcEEEEEeCCCeE
Q psy13856 92 GTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLE-N-HSDWVRDVAWAPSWGLSKCMIASCSQDRKV 169 (271)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~-~-h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i 169 (271)
|. .+ + +.+..+. + |...|.+++|+| ++.+|++++.|++|
T Consensus 224 d~---~~------------------------------~--~~~~~~~~g~h~~~v~~~~~s~----~~~~l~s~s~d~~v 264 (355)
T 3vu4_A 224 KT---ED------------------------------G--VLVREFRRGLDRADVVDMKWST----DGSKLAVVSDKWTL 264 (355)
T ss_dssp ET---TT------------------------------C--CEEEEEECTTCCSCEEEEEECT----TSCEEEEEETTCEE
T ss_pred EC---CC------------------------------C--cEEEEEEcCCCCCcEEEEEECC----CCCEEEEEECCCEE
Confidence 98 22 2 4555565 5 999999999999 79999999999999
Q ss_pred EEEEcCCCceeeeeeec---------------------cCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 170 IIWTSNDYVTWTPFIMN---------------------TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 170 ~iwd~~~~~~~~~~~~~---------------------~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
++||++.........+. ........++|++++.+|++++.||.+++|++..++
T Consensus 265 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~ 338 (355)
T 3vu4_A 265 HVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDD 338 (355)
T ss_dssp EEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEET
T ss_pred EEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCC
Confidence 99999765321111111 112234678999999999999999999999987543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.5e-19 Score=148.44 Aligned_cols=153 Identities=15% Similarity=0.081 Sum_probs=117.8
Q ss_pred ceecccCCCCC---CCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEe
Q psy13856 24 IETYTESPLRI---GHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGT 93 (271)
Q Consensus 24 ~~~~~~~~~~~---g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~ 93 (271)
-.+......|+ |.+|++|+.||.|++||+ ...+.+|... |.+++|+|++++|++++.|+.|++||.
T Consensus 40 ~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~l~s~~~dg~v~iwd~ 115 (368)
T 3mmy_A 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGP----VLDVCWSDDGSKVFTASCDKTAKMWDL 115 (368)
T ss_dssp SCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSC----EEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred CceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCC----EEEEEECcCCCEEEEEcCCCcEEEEEc
Confidence 34444555567 699999999999999998 2677889999 999999999999999999999999998
Q ss_pred ecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEE--ccCCCCCCcEEEEEeCCCeEEE
Q psy13856 94 VQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAW--APSWGLSKCMIASCSQDRKVII 171 (271)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~--~p~~~~~~~~l~s~~~dg~i~i 171 (271)
.+ + ... .+.+|...|.+++| +| ++.+|++++.|+.|++
T Consensus 116 ---~~------------------------------~--~~~-~~~~~~~~v~~~~~~~~~----~~~~l~~~~~dg~i~v 155 (368)
T 3mmy_A 116 ---SS------------------------------N--QAI-QIAQHDAPVKTIHWIKAP----NYSCVMTGSWDKTLKF 155 (368)
T ss_dssp ---TT------------------------------T--EEE-EEEECSSCEEEEEEEECS----SCEEEEEEETTSEEEE
T ss_pred ---CC------------------------------C--Cce-eeccccCceEEEEEEeCC----CCCEEEEccCCCcEEE
Confidence 22 2 222 24469999999999 77 6899999999999999
Q ss_pred EEcCCCceeeeeeeccC-----------------------------------------CCCeEEEEEecCCCE----EEE
Q psy13856 172 WTSNDYVTWTPFIMNTF-----------------------------------------DDVVWNVSWSLTGDI----LTV 206 (271)
Q Consensus 172 wd~~~~~~~~~~~~~~h-----------------------------------------~~~v~~v~~~~~g~~----l~s 206 (271)
||+++++. ...+..+ ...+.++++.+++.. +++
T Consensus 156 wd~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (368)
T 3mmy_A 156 WDTRSSNP--MMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFAL 233 (368)
T ss_dssp ECSSCSSC--SEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEE
T ss_pred EECCCCcE--EEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEE
Confidence 99987654 2222221 234455555555443 888
Q ss_pred EECCCcEEEEEeCCCC
Q psy13856 207 SCGDNSVSLWKENTDG 222 (271)
Q Consensus 207 ~s~D~~v~iw~~~~~~ 222 (271)
++.|+.|++|+++...
T Consensus 234 ~~~dg~i~i~~~~~~~ 249 (368)
T 3mmy_A 234 GSIEGRVAIHYINPPN 249 (368)
T ss_dssp EETTSEEEEEESSCSC
T ss_pred ecCCCcEEEEecCCCC
Confidence 9999999999987653
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-19 Score=153.68 Aligned_cols=153 Identities=18% Similarity=0.181 Sum_probs=117.4
Q ss_pred CCCCEEEEccCCCeEEeccc--eee------------------eccccccccccceEEEEcCCCCeEE----EEeCCCcE
Q psy13856 33 RIGHTLISCDTQAHIGIRST--ISL------------------LQGSVYLRRESNKAGALSPKLNRSA----TSSFHEAA 88 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~--~~~------------------~~~h~~~~~~~i~~~~~s~~~~~l~----s~s~d~~i 88 (271)
+++.++++++.|+ +++|+. +.. ...+... |.+++|+|++++|+ +|+.|+.|
T Consensus 46 ~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----v~~l~~spdg~~lav~~~sgs~d~~v 120 (434)
T 2oit_A 46 NKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP----IHHLALSCDNLTLSACMMSSEYGSII 120 (434)
T ss_dssp TTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC----EEEEEECTTSCEEEEEEEETTTEEEE
T ss_pred cCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc----ccEEEEcCCCCEEEEEEeccCCCceE
Confidence 4677888888877 888775 100 0112334 89999999999999 88899999
Q ss_pred EEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCe
Q psy13856 89 KHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK 168 (271)
Q Consensus 89 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~ 168 (271)
++||+.....+... ....+.....+.+|...|.+++|+|. ++.+|++++.||+
T Consensus 121 ~iwd~~~~~~~~~~------------------------~~~~~~~~~~~~~h~~~V~~v~~~p~---~~~~las~s~Dg~ 173 (434)
T 2oit_A 121 AFFDVRTFSNEAKQ------------------------QKRPFAYHKLLKDAGGMVIDMKWNPT---VPSMVAVCLADGS 173 (434)
T ss_dssp EEEEHHHHHCTTCS------------------------SCCCSEEEECCCSGGGSEEEEEECSS---CTTEEEEEETTSC
T ss_pred EEEEccccccCCcC------------------------CcceeeeeeccCCCCCceEEEEECCC---CCCEEEEEECCCe
Confidence 99998321000000 00111335566789999999999995 4899999999999
Q ss_pred EEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 169 VIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 169 i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
|++||++++.. .....+|...|++++|+|+|.+|++|+.||+|++||.+
T Consensus 174 v~iwD~~~~~~--~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~ 222 (434)
T 2oit_A 174 IAVLQVTETVK--VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT 222 (434)
T ss_dssp EEEEEESSSEE--EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred EEEEEcCCCcc--eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence 99999998754 44556788999999999999999999999999999987
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.79 E-value=5.3e-18 Score=144.66 Aligned_cols=150 Identities=15% Similarity=0.072 Sum_probs=116.6
Q ss_pred ecccCCCCCCCEEE----EccCCCeEEeccc--e--------------eeeccccccccccceEEEEcCC-CCeEEEEeC
Q psy13856 26 TYTESPLRIGHTLI----SCDTQAHIGIRST--I--------------SLLQGSVYLRRESNKAGALSPK-LNRSATSSF 84 (271)
Q Consensus 26 ~~~~~~~~~g~~l~----s~s~d~~i~lwd~--~--------------~~~~~h~~~~~~~i~~~~~s~~-~~~l~s~s~ 84 (271)
+......++|++|+ +|+.|+.|++||+ . ..+.+|... |.+++|+|+ +++|++++.
T Consensus 95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~----V~~v~~~p~~~~~las~s~ 170 (434)
T 2oit_A 95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGM----VIDMKWNPTVPSMVAVCLA 170 (434)
T ss_dssp EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGS----EEEEEECSSCTTEEEEEET
T ss_pred ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCc----eEEEEECCCCCCEEEEEEC
Confidence 44555567999999 8999999999997 1 344568888 999999997 789999999
Q ss_pred CCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe
Q psy13856 85 HEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 164 (271)
Q Consensus 85 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~ 164 (271)
|++|++||+. + + .......+|...|.+++|+| ++.+|++|+
T Consensus 171 Dg~v~iwD~~---~------------------------------~--~~~~~~~~~~~~v~~v~wsp----dg~~lasgs 211 (434)
T 2oit_A 171 DGSIAVLQVT---E------------------------------T--VKVCATLPSTVAVTSVCWSP----KGKQLAVGK 211 (434)
T ss_dssp TSCEEEEEES---S------------------------------S--EEEEEEECGGGCEEEEEECT----TSSCEEEEE
T ss_pred CCeEEEEEcC---C------------------------------C--cceeeccCCCCceeEEEEcC----CCCEEEEEc
Confidence 9999999982 2 2 23334456889999999999 699999999
Q ss_pred CCCeEEEEEcCCCceeeeeeecc-------CCCCeEEEEEecCCCEEEEE-ECCC------cEEEEEeCCC
Q psy13856 165 QDRKVIIWTSNDYVTWTPFIMNT-------FDDVVWNVSWSLTGDILTVS-CGDN------SVSLWKENTD 221 (271)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~-------h~~~v~~v~~~~~g~~l~s~-s~D~------~v~iw~~~~~ 221 (271)
.||.|++||.+ +.. ...+.. |...|.+++|++++.++++. +.|| .+++|++...
T Consensus 212 ~dg~v~iwd~~-~~~--~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 212 QNGTVVQYLPT-LQE--KKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTSCEEEECTT-CCE--EEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred CCCcEEEEccC-Ccc--cccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceEEEEeccC
Confidence 99999999998 332 233322 33489999999998877553 3453 3899999754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-16 Score=133.92 Aligned_cols=188 Identities=11% Similarity=0.009 Sum_probs=136.0
Q ss_pred ccCCCCCCCEE-EEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeE-EEEeCCCcEEEEEeecCCCCc
Q psy13856 28 TESPLRIGHTL-ISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRS-ATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 28 ~~~~~~~g~~l-~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l-~s~s~d~~i~~~d~~~~~~~~ 100 (271)
.....|++++| ++++.|+.|++||. +..+..| .. +.+++|+|+++.+ ++++.|+.|++||. .+++
T Consensus 78 ~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~----~~~~~~s~dg~~l~~~~~~~~~v~~~d~---~~~~ 149 (391)
T 1l0q_A 78 GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG-KS----PLGLALSPDGKKLYVTNNGDKTVSVINT---VTKA 149 (391)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECS-SS----EEEEEECTTSSEEEEEETTTTEEEEEET---TTTE
T ss_pred ceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCC-CC----cceEEECCCCCEEEEEeCCCCEEEEEEC---CCCc
Confidence 33445788866 56667899999998 3444443 34 7899999999977 68888999999998 6666
Q ss_pred eeeccc----eeeEEEeeccceee------eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe---CCC
Q psy13856 101 CLQPKY----FKLTVYSTKLTRIL------ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS---QDR 167 (271)
Q Consensus 101 ~~~~~~----~~~~~~~~~~~~l~------~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~---~dg 167 (271)
...... .....++.+++.++ +.+++.+....+....+. +...+.+++|+| ++.++++++ .++
T Consensus 150 ~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~----~g~~l~~~~~~~~~~ 224 (391)
T 1l0q_A 150 VINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNP----EGTKAYVTNVDKYFN 224 (391)
T ss_dssp EEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECT----TSSEEEEEEECSSCC
T ss_pred EEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECC----CCCEEEEEecCcCCC
Confidence 655442 13344566676653 677772222214555554 567889999999 688888877 689
Q ss_pred eEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEE-EEEECCCcEEEEEeCCCCceeEEEEecccc
Q psy13856 168 KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDIL-TVSCGDNSVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 168 ~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l-~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
.|++||+++++. ...+..|. .+.+++|+|++++| ++++.|+.|++||+.++ +.+..+..+.
T Consensus 225 ~v~~~d~~~~~~--~~~~~~~~-~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~---~~~~~~~~~~ 286 (391)
T 1l0q_A 225 TVSMIDTGTNKI--TARIPVGP-DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN---TITATMAVGK 286 (391)
T ss_dssp EEEEEETTTTEE--EEEEECCS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEECSS
T ss_pred cEEEEECCCCeE--EEEEecCC-CccEEEEccCCCEEEEEcCCCCEEEEEECCCC---cEEEEEECCc
Confidence 999999998765 45555554 57899999999877 56678999999999876 5566655443
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.79 E-value=9.9e-17 Score=134.41 Aligned_cols=186 Identities=11% Similarity=0.021 Sum_probs=136.1
Q ss_pred cccCCCCCCCEE-EEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEE-EEeCCCcEEEEEeecCCCC
Q psy13856 27 YTESPLRIGHTL-ISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSA-TSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 27 ~~~~~~~~g~~l-~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~-s~s~d~~i~~~d~~~~~~~ 99 (271)
......|+|..+ ++++.|+.|++||. +..+..+. . +.+++|+|++++|+ +++.++.|++||. .++
T Consensus 35 ~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~----v~~~~~spdg~~l~~~~~~~~~v~v~d~---~~~ 106 (391)
T 1l0q_A 35 MGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-S----PQGVAVSPDGKQVYVTNMASSTLSVIDT---TSN 106 (391)
T ss_dssp EEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-S----EEEEEECTTSSEEEEEETTTTEEEEEET---TTT
T ss_pred ceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-C----ccceEECCCCCEEEEEECCCCEEEEEEC---CCC
Confidence 334455789865 78889999999998 44444444 5 89999999999775 4556799999998 666
Q ss_pred ceeeccc----eeeEEEeeccceee------eEEEEe--eCCceEEeEEecCCCcceEEEEEccCCCCCCcEE-EEEeCC
Q psy13856 100 ACLQPKY----FKLTVYSTKLTRIL------ILVRIC--GGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMI-ASCSQD 166 (271)
Q Consensus 100 ~~~~~~~----~~~~~~~~~~~~l~------~~v~i~--~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l-~s~~~d 166 (271)
+...... .....++.+++.++ +.+++. ..+ +....+..| ..+.+++|+| ++.++ ++++.|
T Consensus 107 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~--~~~~~~~~~-~~~~~~~~~~----dg~~l~~~~~~~ 179 (391)
T 1l0q_A 107 TVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTK--AVINTVSVG-RSPKGIAVTP----DGTKVYVANFDS 179 (391)
T ss_dssp EEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEECC-SSEEEEEECT----TSSEEEEEETTT
T ss_pred eEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCC--cEEEEEecC-CCcceEEECC----CCCEEEEEeCCC
Confidence 6655442 23445666677663 777772 344 566666655 4569999999 57666 678889
Q ss_pred CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEE---CCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 167 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC---GDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s---~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
+.|++||++++.. ...+ .+...+.+++|+|++.+|++++ .|+.|++||+.++ +.+..+..+
T Consensus 180 ~~v~~~d~~~~~~--~~~~-~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~---~~~~~~~~~ 243 (391)
T 1l0q_A 180 MSISVIDTVTNSV--IDTV-KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN---KITARIPVG 243 (391)
T ss_dssp TEEEEEETTTTEE--EEEE-ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT---EEEEEEECC
T ss_pred CEEEEEECCCCeE--EEEE-ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC---eEEEEEecC
Confidence 9999999998764 3333 3566889999999999999888 6899999999876 445555443
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1e-16 Score=136.04 Aligned_cols=187 Identities=11% Similarity=-0.009 Sum_probs=136.4
Q ss_pred cccCCCCCCCEEEEccCCC---eEEeccc----eeeeccccccccccceEEEEcCCCCeEE-EEeCCCc--EEEEEeecC
Q psy13856 27 YTESPLRIGHTLISCDTQA---HIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSA-TSSFHEA--AKHLGTVQS 96 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~---~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~-s~s~d~~--i~~~d~~~~ 96 (271)
......|||+.|++++.|+ .|++||+ ...+..|... +.+++|+|||+.|+ +++.|+. |++||.
T Consensus 182 ~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~----~~~~~~spdg~~la~~~~~~g~~~i~~~d~--- 254 (415)
T 2hqs_A 182 MSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH----NGAPAFSPDGSKLAFALSKTGSLNLYVMDL--- 254 (415)
T ss_dssp EEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC----EEEEEECTTSSEEEEEECTTSSCEEEEEET---
T ss_pred eeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCc----ccCEEEcCCCCEEEEEEecCCCceEEEEEC---
Confidence 4445567999999999875 9999998 4556677777 89999999999887 6666665 888898
Q ss_pred CCCceeeccc----eeeEEEeeccceee------e--EEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEE
Q psy13856 97 SSPACLQPKY----FKLTVYSTKLTRIL------I--LVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASC 163 (271)
Q Consensus 97 ~~~~~~~~~~----~~~~~~~~~~~~l~------~--~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~ 163 (271)
.+++...... .....++++++.++ + .+.+ ...+ .....+..|...+.+++|+| ++++|+.+
T Consensus 255 ~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~--~~~~~l~~~~~~~~~~~~sp----dG~~l~~~ 328 (415)
T 2hqs_A 255 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING--GAPQRITWEGSQNQDADVSS----DGKFMVMV 328 (415)
T ss_dssp TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCCEECCCSSSEEEEEEECT----TSSEEEEE
T ss_pred CCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCC--CCEEEEecCCCcccCeEECC----CCCEEEEE
Confidence 5555543332 24456777888776 1 4555 2222 12344556778899999999 79999888
Q ss_pred eCC---CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCC---cEEEEEeCCCCceeEEEEecccc
Q psy13856 164 SQD---RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDN---SVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 164 ~~d---g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~---~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
+.+ ..|++||+.+++. ..+..+. .+.+++|+|+|++|++++.|+ .|++||+..+ ....+..+.
T Consensus 329 ~~~~g~~~i~~~d~~~~~~---~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~----~~~~l~~~~ 397 (415)
T 2hqs_A 329 SSNGGQQHIAKQDLATGGV---QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR----FKARLPATD 397 (415)
T ss_dssp EECSSCEEEEEEETTTCCE---EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC----CEEECCCSS
T ss_pred ECcCCceEEEEEECCCCCE---EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC----cEEEeeCCC
Confidence 764 6899999998773 3455554 899999999999999988876 7999998632 334455443
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.76 E-value=5.3e-18 Score=137.70 Aligned_cols=131 Identities=11% Similarity=-0.037 Sum_probs=92.1
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeE------------EEEeCCCcEEEEEeecC
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRS------------ATSSFHEAAKHLGTVQS 96 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l------------~s~s~d~~i~~~d~~~~ 96 (271)
++.+|++|+.|++|+|||+ ++++.+|... ...+.+++|+|+|.++ ++|+.|+++++||.
T Consensus 192 ~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~-v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~--- 267 (356)
T 2w18_A 192 MQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY-QASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINP--- 267 (356)
T ss_dssp STTEEEEEETTSEEEEEETTTCCEEEEEECCC----CCCEEEEEEETTEEEEEEC------------CCEEEEEEET---
T ss_pred CCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc-eeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEEC---
Confidence 6789999999999999999 6777765432 1237788999999876 67889999999998
Q ss_pred CCCceeeccc------eeeEEE--eeccceee-----eEEEE--eeCCceEEeEEecCCCcceE-EEEEccCCCCCCcEE
Q psy13856 97 SSPACLQPKY------FKLTVY--STKLTRIL-----ILVRI--CGGDKWIEETKLENHSDWVR-DVAWAPSWGLSKCMI 160 (271)
Q Consensus 97 ~~~~~~~~~~------~~~~~~--~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~~~~~l 160 (271)
.+++++.... +..... ...+..++ ++|+| ...+ +++.++.+|...+. +++|+| |+.+|
T Consensus 268 ~tgk~l~v~~~~~p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tG--k~l~tL~gH~~~vvs~vafSP----DG~~L 341 (356)
T 2w18_A 268 KTTLSVGVMLYCLPPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLG--QCTALLPPVSDQHWSFVKWSG----TDSHL 341 (356)
T ss_dssp TTTEEEEEEEECCCTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTC--SEEEEECCC--CCCCEEEECS----SSSEE
T ss_pred CCCEEEEEEEeeccCCCcceeEccccCCCEEEEEcCCCcEEEEECCCC--cEEEEecCCCCCeEEEEEECC----CCCEE
Confidence 6776654321 110011 11133444 78999 3444 78889999987665 689999 79999
Q ss_pred EEEeCCCeEEEEEc
Q psy13856 161 ASCSQDRKVIIWTS 174 (271)
Q Consensus 161 ~s~~~dg~i~iwd~ 174 (271)
++|+.|++|++||+
T Consensus 342 aSGS~D~TIklWd~ 355 (356)
T 2w18_A 342 LAGQKDGNIFVYHY 355 (356)
T ss_dssp EEECTTSCEEEEEE
T ss_pred EEEECCCcEEEecC
Confidence 99999999999996
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.76 E-value=2.8e-16 Score=133.45 Aligned_cols=182 Identities=10% Similarity=-0.005 Sum_probs=135.8
Q ss_pred CCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEE-EEeCCCcEEEEEeecCCCCceeec
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSA-TSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~-s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
..+++.++++++.|+.|++||. +..+..|... +.+++|+|+++.++ +++.|+.|++||. .+++....
T Consensus 177 ~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~i~~~d~---~~~~~~~~ 249 (433)
T 3bws_A 177 IPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKW----SKILLYDPIRDLVYCSNWISEDISVIDR---KTKLEIRK 249 (433)
T ss_dssp EGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSS----EEEEEEETTTTEEEEEETTTTEEEEEET---TTTEEEEE
T ss_pred EcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCC----eeEEEEcCCCCEEEEEecCCCcEEEEEC---CCCcEEEE
Confidence 3568999999999999999998 5666778888 99999999999875 5558999999998 66666554
Q ss_pred cce----eeEEEeeccceee--e-----------EEEE-e-eCCceEEeEEecCCCcceEEEEEccCCCCCCc-EEEEEe
Q psy13856 105 KYF----KLTVYSTKLTRIL--I-----------LVRI-C-GGDKWIEETKLENHSDWVRDVAWAPSWGLSKC-MIASCS 164 (271)
Q Consensus 105 ~~~----~~~~~~~~~~~l~--~-----------~v~i-~-~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~-~l~s~~ 164 (271)
... ....++.+++.++ . .|++ . ..+ +....+ .|...+.+++|+| ++. ++++++
T Consensus 250 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~--~~~~~~-~~~~~~~~~~~~~----~g~~l~~~~~ 322 (433)
T 3bws_A 250 TDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKE--KLIDTI-GPPGNKRHIVSGN----TENKIYVSDM 322 (433)
T ss_dssp CCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTT--EEEEEE-EEEECEEEEEECS----STTEEEEEET
T ss_pred ecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCC--cEEeec-cCCCCcceEEECC----CCCEEEEEec
Confidence 422 3334555566655 2 5556 2 333 343333 4667889999999 464 667778
Q ss_pred CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEEC---------------CCcEEEEEeCCCCceeEEEE
Q psy13856 165 QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG---------------DNSVSLWKENTDGAWQCITE 229 (271)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~---------------D~~v~iw~~~~~~~~~~~~~ 229 (271)
.|+.|++||..+++. ...+ .+...+.+++|+|+|+++++++. ||.|++||+.++ +.+..
T Consensus 323 ~~~~v~v~d~~~~~~--~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---~~~~~ 396 (433)
T 3bws_A 323 CCSKIEVYDLKEKKV--QKSI-PVFDKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---TVKEF 396 (433)
T ss_dssp TTTEEEEEETTTTEE--EEEE-ECSSSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---EEEEE
T ss_pred CCCEEEEEECCCCcE--EEEe-cCCCCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---cEEEE
Confidence 999999999998764 3333 36778999999999999988887 579999999876 55555
Q ss_pred ecc
Q psy13856 230 MGK 232 (271)
Q Consensus 230 ~~~ 232 (271)
+..
T Consensus 397 ~~~ 399 (433)
T 3bws_A 397 WEA 399 (433)
T ss_dssp EEC
T ss_pred ecC
Confidence 544
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.8e-16 Score=134.66 Aligned_cols=176 Identities=6% Similarity=-0.024 Sum_probs=133.7
Q ss_pred cCCCCCCCEEEEccCCCeEEeccc-----ee-----eeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 29 ESPLRIGHTLISCDTQAHIGIRST-----IS-----LLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 29 ~~~~~~g~~l~s~s~d~~i~lwd~-----~~-----~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
....|++.++++++.|+.|++||. .. .+.+|... |.+++|+|+++.+++++.|+.|++||. .+
T Consensus 128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~~~s~~~d~~v~~~d~---~~ 200 (433)
T 3bws_A 128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGF----VETISIPEHNELWVSQMQANAVHVFDL---KT 200 (433)
T ss_dssp CEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCE----EEEEEEGGGTEEEEEEGGGTEEEEEET---TT
T ss_pred EEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCc----eeEEEEcCCCEEEEEECCCCEEEEEEC---CC
Confidence 333458889999999999999998 22 34577778 999999999999999999999999998 66
Q ss_pred Cceeecc-----ceeeEEEeeccceee------eEEEEe--eCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe-
Q psy13856 99 PACLQPK-----YFKLTVYSTKLTRIL------ILVRIC--GGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS- 164 (271)
Q Consensus 99 ~~~~~~~-----~~~~~~~~~~~~~l~------~~v~i~--~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~- 164 (271)
++..... ......++.+++.++ +.|++. ..+ +....+..+ ..+.+++|+| ++.++++++
T Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~--~~~~~~~~~-~~~~~~~~~~----~g~~l~~~~~ 273 (433)
T 3bws_A 201 LAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK--LEIRKTDKI-GLPRGLLLSK----DGKELYIAQF 273 (433)
T ss_dssp CCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT--EEEEECCCC-SEEEEEEECT----TSSEEEEEEE
T ss_pred ceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC--cEEEEecCC-CCceEEEEcC----CCCEEEEEEC
Confidence 5555443 123445566666653 677772 344 556666644 5689999999 688888887
Q ss_pred -------CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEE-EEEECCCcEEEEEeCCC
Q psy13856 165 -------QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDIL-TVSCGDNSVSLWKENTD 221 (271)
Q Consensus 165 -------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l-~s~s~D~~v~iw~~~~~ 221 (271)
.|+.|++||+++++. .....|...+.+++|+|+++.+ ++++.|+.|++||++++
T Consensus 274 ~~~~~~~~dg~i~~~d~~~~~~---~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~ 335 (433)
T 3bws_A 274 SASNQESGGGRLGIYSMDKEKL---IDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK 335 (433)
T ss_dssp ESCTTCSCCEEEEEEETTTTEE---EEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT
T ss_pred CCCccccCCCeEEEEECCCCcE---EeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC
Confidence 589999999998764 2233556688999999999755 56688999999999865
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.74 E-value=6.4e-16 Score=131.07 Aligned_cols=171 Identities=12% Similarity=0.035 Sum_probs=130.8
Q ss_pred CCEEEEccCC------CeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCC---cEEEEEeecCCCCce
Q psy13856 35 GHTLISCDTQ------AHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHE---AAKHLGTVQSSSPAC 101 (271)
Q Consensus 35 g~~l~s~s~d------~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~---~i~~~d~~~~~~~~~ 101 (271)
+..++.++.+ +.|++||. ...+.+|... +.+++|+|+|++|++++.++ .|++||+ .++++
T Consensus 143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~~~~l~~~~~~----v~~~~~Spdg~~la~~s~~~~~~~i~~~d~---~tg~~ 215 (415)
T 2hqs_A 143 RTRIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSPQP----LMSPAWSPDGSKLAYVTFESGRSALVIQTL---ANGAV 215 (415)
T ss_dssp TCEEEEEEECSSSSCCEEEEEEETTSCSCEEEEEESSC----EEEEEECTTSSEEEEEECTTSSCEEEEEET---TTCCE
T ss_pred CCEEEEEEecCCCCccceEEEEcCCCCCCEEEeCCCCc----ceeeEEcCCCCEEEEEEecCCCcEEEEEEC---CCCcE
Confidence 6667766654 79999998 6677788888 99999999999999999885 9999998 56655
Q ss_pred eeccc----eeeEEEeeccceee--------eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC-CC
Q psy13856 102 LQPKY----FKLTVYSTKLTRIL--------ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ-DR 167 (271)
Q Consensus 102 ~~~~~----~~~~~~~~~~~~l~--------~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~-dg 167 (271)
..... .....++++++.++ ..|.+ .... .....+..|...+.+++|+| |+.+|+.++. ++
T Consensus 216 ~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~--~~~~~l~~~~~~~~~~~~sp----dg~~l~~~s~~~g 289 (415)
T 2hqs_A 216 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS--GQIRQVTDGRSNNTEPTWFP----DSQNLAFTSDQAG 289 (415)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--CCEEECCCCSSCEEEEEECT----TSSEEEEEECTTS
T ss_pred EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCC--CCEEeCcCCCCcccceEECC----CCCEEEEEECCCC
Confidence 54332 24566777888766 23555 2222 23356777888999999999 7898888876 44
Q ss_pred --eEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC---CcEEEEEeCCC
Q psy13856 168 --KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD---NSVSLWKENTD 221 (271)
Q Consensus 168 --~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D---~~v~iw~~~~~ 221 (271)
.|.+||..++. ...+..+...+.+++|+|+|++|++++.+ ..|++||+.++
T Consensus 290 ~~~i~~~d~~~~~---~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~ 345 (415)
T 2hqs_A 290 RPQVYKVNINGGA---PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG 345 (415)
T ss_dssp SCEEEEEETTSSC---CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC
T ss_pred CcEEEEEECCCCC---EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC
Confidence 67888988765 34455567789999999999999988764 58999999865
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.9e-14 Score=115.10 Aligned_cols=192 Identities=14% Similarity=-0.015 Sum_probs=130.2
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-e-----eeeccc-cccccccceEEEEcCCCCeEEEEe--CCCcEEEEEeecC
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-I-----SLLQGS-VYLRRESNKAGALSPKLNRSATSS--FHEAAKHLGTVQS 96 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-~-----~~~~~h-~~~~~~~i~~~~~s~~~~~l~s~s--~d~~i~~~d~~~~ 96 (271)
+......|||++|++++ ++.|.+||+ - .....| ... +.+++|+|++++|++++ .++..++|....
T Consensus 44 v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~----~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~- 117 (297)
T 2ojh_A 44 FEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATIC----NNDHGISPDGALYAISDKVEFGKSAIYLLPS- 117 (297)
T ss_dssp CEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCB----CSCCEECTTSSEEEEEECTTTSSCEEEEEET-
T ss_pred eEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEecccccccc----ccceEECCCCCEEEEEEeCCCCcceEEEEEC-
Confidence 34444567999999987 689999998 2 222333 244 78999999999999998 445666666521
Q ss_pred CCCceeecc---ceeeEEEeeccceee------eEEEE---eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe
Q psy13856 97 SSPACLQPK---YFKLTVYSTKLTRIL------ILVRI---CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 164 (271)
Q Consensus 97 ~~~~~~~~~---~~~~~~~~~~~~~l~------~~v~i---~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~ 164 (271)
..+...... ......++.+++.++ +.+++ .... .....+..|...+.+++|+| ++.+++.++
T Consensus 118 ~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~s~----dg~~l~~~~ 191 (297)
T 2ojh_A 118 TGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS--GVETRLTHGEGRNDGPDYSP----DGRWIYFNS 191 (297)
T ss_dssp TCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTT--CCEEECCCSSSCEEEEEECT----TSSEEEEEE
T ss_pred CCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCC--CcceEcccCCCccccceECC----CCCEEEEEe
Confidence 222222211 223345667777665 44455 2222 23456667888999999999 688777665
Q ss_pred -CCCeEEEEEcC-CCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC-----------CcEEEEEeCCCCceeEEEEec
Q psy13856 165 -QDRKVIIWTSN-DYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD-----------NSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 165 -~dg~i~iwd~~-~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-----------~~v~iw~~~~~~~~~~~~~~~ 231 (271)
.++.+++|++. .... ...+..|...+.+++|+|+|++|++++.+ +.|++||+.++ ....+..+.
T Consensus 192 ~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~-~~~~~~~~~ 268 (297)
T 2ojh_A 192 SRTGQMQIWRVRVDGSS--VERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGG-NVETLFDLF 268 (297)
T ss_dssp CTTSSCEEEEEETTSSC--EEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSC-SCEEEEEEE
T ss_pred cCCCCccEEEECCCCCC--cEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCC-CceeeeccC
Confidence 58999999986 3333 55667788889999999999999888876 56999998754 444444443
Q ss_pred c
Q psy13856 232 K 232 (271)
Q Consensus 232 ~ 232 (271)
+
T Consensus 269 ~ 269 (297)
T 2ojh_A 269 G 269 (297)
T ss_dssp E
T ss_pred C
Confidence 3
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-14 Score=125.16 Aligned_cols=188 Identities=9% Similarity=0.043 Sum_probs=136.0
Q ss_pred CCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
..|++.++++++.|++|.+||. +..+..+. . +..++|+|||++|++++.|++|++||.. ..+++++...
T Consensus 145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~-~----~~~v~~spdg~~l~v~~~d~~V~v~D~~-~~t~~~~~~i 218 (543)
T 1nir_A 145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-A----VHISRMSASGRYLLVIGRDARIDMIDLW-AKEPTKVAEI 218 (543)
T ss_dssp CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECST-T----EEEEEECTTSCEEEEEETTSEEEEEETT-SSSCEEEEEE
T ss_pred cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCc-c----cceEEECCCCCEEEEECCCCeEEEEECc-CCCCcEEEEE
Confidence 3468889999999999999998 44444222 2 5789999999999999999999999982 1234454443
Q ss_pred c---e-eeEEEee----ccceee------eEEEEeeCCceEEeEEecC----------CC-cceEEEEEccCCCCCCcEE
Q psy13856 106 Y---F-KLTVYST----KLTRIL------ILVRICGGDKWIEETKLEN----------HS-DWVRDVAWAPSWGLSKCMI 160 (271)
Q Consensus 106 ~---~-~~~~~~~----~~~~l~------~~v~i~~~~~~~~~~~~~~----------h~-~~v~~v~~~p~~~~~~~~l 160 (271)
. . ....++. ++++++ +.|.+.+....+++..+.. |. ..+.++.++|. ++.++
T Consensus 219 ~~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~---~~~~~ 295 (543)
T 1nir_A 219 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE---HPEFI 295 (543)
T ss_dssp ECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSS---SSEEE
T ss_pred ecCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCC---CCEEE
Confidence 2 1 3445666 777766 6677733333356666543 22 37889999995 56778
Q ss_pred EEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeCCCCceeEEEEec
Q psy13856 161 ASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 161 ~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
++...++.|.+||..+.+......+ .+...+..+.|+|+|++|++++ .+++|.+||..++ +.+..+.
T Consensus 296 vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~ 363 (543)
T 1nir_A 296 VNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVD 363 (543)
T ss_dssp EEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEE
T ss_pred EEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---eEEEeec
Confidence 8888899999999988664322233 3566788999999999877655 5899999999877 5555554
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.65 E-value=6.8e-15 Score=132.96 Aligned_cols=185 Identities=9% Similarity=0.026 Sum_probs=128.7
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCC---------CcEE
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH---------EAAK 89 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d---------~~i~ 89 (271)
...+.....|||+++++ +.||+|++||. ...+..|... ...|.+++|||||++|++++.+ +.++
T Consensus 17 ~~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~-~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~ 94 (723)
T 1xfd_A 17 IHDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIE-SLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYV 94 (723)
T ss_dssp CCCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTT-TTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEE
T ss_pred ccccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEecccccc-ccccceEEECCCCCEEEEEecCccceeecceeeEE
Confidence 34566667789997766 78899999998 3445555430 0127899999999999999875 6788
Q ss_pred EEEeecCCCCceeecc---c----eeeEEEeeccceee----eEEEE--eeCCceEEeEEecCCCcc-------------
Q psy13856 90 HLGTVQSSSPACLQPK---Y----FKLTVYSTKLTRIL----ILVRI--CGGDKWIEETKLENHSDW------------- 143 (271)
Q Consensus 90 ~~d~~~~~~~~~~~~~---~----~~~~~~~~~~~~l~----~~v~i--~~~~~~~~~~~~~~h~~~------------- 143 (271)
+||. .+++..... . .....++++++.++ +.+.+ ...+ +..+....+...
T Consensus 95 ~~d~---~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~g--~~~~~~~~~~~~~~~~g~~~~v~~e 169 (723)
T 1xfd_A 95 LSKI---PHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFENNIYYCAHVGK--QAIRVVSTGKEGVIYNGLSDWLYEE 169 (723)
T ss_dssp EEES---SSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEETTEEEEESSSSS--CCEEEECCCBTTTEEEEECCHHHHH
T ss_pred EEEC---CCCceEeccCCccccccccccEECCCCCEEEEEECCeEEEEECCCC--ceEEEecCCCCCceECcccceeEEE
Confidence 9998 444442221 1 23456788888888 56777 3333 233333333332
Q ss_pred -----eEEEEEccCCCCCCcEEEEEeCCC----------------------------------eEEEEEcCCCceeeeee
Q psy13856 144 -----VRDVAWAPSWGLSKCMIASCSQDR----------------------------------KVIIWTSNDYVTWTPFI 184 (271)
Q Consensus 144 -----v~~v~~~p~~~~~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~~~~~ 184 (271)
+.+++|+| |+++|+.++.|+ .|++||+.++.. ...
T Consensus 170 e~~~~~~~~~~Sp----Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~--~~~ 243 (723)
T 1xfd_A 170 EILKTHIAHWWSP----DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTH--DLE 243 (723)
T ss_dssp TTSSSSEEEEECT----TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCC--CEE
T ss_pred EeccCcceEEECC----CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCce--eEE
Confidence 37899999 799999887653 799999988763 233
Q ss_pred ecc------CCCCeEEEEEecCCCEEEEEEC----CCcEEEEEeCCC
Q psy13856 185 MNT------FDDVVWNVSWSLTGDILTVSCG----DNSVSLWKENTD 221 (271)
Q Consensus 185 ~~~------h~~~v~~v~~~~~g~~l~s~s~----D~~v~iw~~~~~ 221 (271)
+.. +...+.+++|+|||+++++.+. +..|++||+.++
T Consensus 244 l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g 290 (723)
T 1xfd_A 244 MMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG 290 (723)
T ss_dssp CCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred eeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC
Confidence 433 3567899999999998877653 357999998865
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-12 Score=106.66 Aligned_cols=193 Identities=6% Similarity=-0.069 Sum_probs=121.6
Q ss_pred CCCCCCEEEEccCC-CeEEeccc---------eeeeccccccccccceEEEEcCCCCeEEEEeC-CCcEEEEEeecCCCC
Q psy13856 31 PLRIGHTLISCDTQ-AHIGIRST---------ISLLQGSVYLRRESNKAGALSPKLNRSATSSF-HEAAKHLGTVQSSSP 99 (271)
Q Consensus 31 ~~~~g~~l~s~s~d-~~i~lwd~---------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~~~d~~~~~~~ 99 (271)
..|+|++|++++.+ +.|++|++ +..+..+. . +..++|+|+++++++++. ++.|++|+..++...
T Consensus 45 ~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~ 119 (343)
T 1ri6_A 45 VSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-S----LTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPV 119 (343)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-C----CSEEEECTTSSEEEEEETTTTEEEEEEEETTEEE
T ss_pred ECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-C----CcEEEEcCCCCEEEEEecCCCeEEEEECCCCccc
Confidence 34799988888776 99999987 12222222 4 789999999998876664 888999998321122
Q ss_pred ceeecc----ceeeEEEeeccceee------eEEEE--eeC-CceEEeE--EecC-CCcceEEEEEccCCCCCCcEEE-E
Q psy13856 100 ACLQPK----YFKLTVYSTKLTRIL------ILVRI--CGG-DKWIEET--KLEN-HSDWVRDVAWAPSWGLSKCMIA-S 162 (271)
Q Consensus 100 ~~~~~~----~~~~~~~~~~~~~l~------~~v~i--~~~-~~~~~~~--~~~~-h~~~v~~v~~~p~~~~~~~~l~-s 162 (271)
...... ......++.+++.++ +.+.+ ... +...... .+.. ....+..++|+| ++.+++ +
T Consensus 120 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p----dg~~l~~~ 195 (343)
T 1ri6_A 120 GVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHP----NEQYAYCV 195 (343)
T ss_dssp EEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECT----TSSEEEEE
T ss_pred cccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECC----CCCEEEEE
Confidence 222222 113344666666554 55666 233 4333322 2332 345788999999 677665 4
Q ss_pred EeCCCeEEEEEcCC--Cceeeeeeec----cC--CCCeEEEEEecCCCEEEEEE-CCCcEEEEEeCC-CCceeEEEEecc
Q psy13856 163 CSQDRKVIIWTSND--YVTWTPFIMN----TF--DDVVWNVSWSLTGDILTVSC-GDNSVSLWKENT-DGAWQCITEMGK 232 (271)
Q Consensus 163 ~~~dg~i~iwd~~~--~~~~~~~~~~----~h--~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~~-~~~~~~~~~~~~ 232 (271)
+..++.+.+|++.. +......... ++ ...+..++|+|+|++|+++. .|+.|.+|++.. .+..+.+..+..
T Consensus 196 ~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~ 275 (343)
T 1ri6_A 196 NELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPT 275 (343)
T ss_dssp ETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEEC
T ss_pred eCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecC
Confidence 55899999999954 3221111111 11 23567899999998887554 689999999984 334566655544
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.9e-14 Score=127.05 Aligned_cols=182 Identities=7% Similarity=-0.099 Sum_probs=128.2
Q ss_pred cceecccCCCCCCCEEEEccC-CCeEEeccc----eeeecccc-ccccccceEEEEcCCCCeEEEEeC---CCcEEEEEe
Q psy13856 23 EIETYTESPLRIGHTLISCDT-QAHIGIRST----ISLLQGSV-YLRRESNKAGALSPKLNRSATSSF---HEAAKHLGT 93 (271)
Q Consensus 23 ~~~~~~~~~~~~g~~l~s~s~-d~~i~lwd~----~~~~~~h~-~~~~~~i~~~~~s~~~~~l~s~s~---d~~i~~~d~ 93 (271)
...++.....|||+.||+++. ||+++||++ ...+..|. .. +..++|+|| +.+++++. +...++|..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~----~~~~~~spd-~~l~~~~~~~g~~~~~l~~~ 95 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINS----VLDPHYGVG-RVILVRDVSKGAEQHALFKV 95 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSE----ECEECTTCS-EEEEEEECSTTSCCEEEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccc----cccccCCCC-eEEEEeccCCCCcceEEEEE
Confidence 445677777789999999887 999999998 34444454 56 889999999 77777765 556677766
Q ss_pred ecCCCCceeecc---ceeeEEEeeccceee------eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEE
Q psy13856 94 VQSSSPACLQPK---YFKLTVYSTKLTRIL------ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIAS 162 (271)
Q Consensus 94 ~~~~~~~~~~~~---~~~~~~~~~~~~~l~------~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s 162 (271)
.....+...... ......++.+++.++ +.+.+ ..++ +...... +.. .+++|+| ||++|++
T Consensus 96 ~~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g--~~~~l~~-~~~--~~~~~sp----DG~~la~ 166 (582)
T 3o4h_A 96 NTSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGG--GLRELAR-LPG--FGFVSDI----RGDLIAG 166 (582)
T ss_dssp ETTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETT--EEEEEEE-ESS--CEEEEEE----ETTEEEE
T ss_pred eccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCC--cEEEeec-CCC--ceEEECC----CCCEEEE
Confidence 420122222221 223445666665433 22234 3444 2222222 323 7899999 7999998
Q ss_pred EeCC----CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCC--cEEEEEeCCC
Q psy13856 163 CSQD----RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDN--SVSLWKENTD 221 (271)
Q Consensus 163 ~~~d----g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~--~v~iw~~~~~ 221 (271)
++.| +.|++||+.+++ ...+..|...+..++|+|||+.|+++..++ .|++||++++
T Consensus 167 ~~~~~~~~~~i~~~d~~~g~---~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~ 228 (582)
T 3o4h_A 167 LGFFGGGRVSLFTSNLSSGG---LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG 228 (582)
T ss_dssp EEEEETTEEEEEEEETTTCC---CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC
T ss_pred EEEcCCCCeEEEEEcCCCCC---ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC
Confidence 8877 789999998877 446678888899999999999999888888 8999998865
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.4e-13 Score=120.51 Aligned_cols=194 Identities=13% Similarity=0.126 Sum_probs=132.5
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcC----CCCeEEEEe-CCCcEEEEEee
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSP----KLNRSATSS-FHEAAKHLGTV 94 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~----~~~~l~s~s-~d~~i~~~d~~ 94 (271)
+.....|||++|++++.|+.|++||+ +..+. +... +..++|+| +|+++++++ .+++|.+||.
T Consensus 182 ~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~-~g~~----p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~- 255 (543)
T 1nir_A 182 HISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK-IGIE----ARSVESSKFKGYEDRYTIAGAYWPPQFAIMDG- 255 (543)
T ss_dssp EEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE-CCSE----EEEEEECCSTTCTTTEEEEEEEESSEEEEEET-
T ss_pred ceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe-cCCC----cceEEeCCCcCCCCCEEEEEEccCCeEEEEec-
Confidence 33445679999999999999999998 33444 3334 78999999 999998887 5899999998
Q ss_pred cCCCCceeeccce----------------eeEEEeeccceee------eEEEE-e-eCCceEEeEEecCCCcceEEEEEc
Q psy13856 95 QSSSPACLQPKYF----------------KLTVYSTKLTRIL------ILVRI-C-GGDKWIEETKLENHSDWVRDVAWA 150 (271)
Q Consensus 95 ~~~~~~~~~~~~~----------------~~~~~~~~~~~l~------~~v~i-~-~~~~~~~~~~~~~h~~~v~~v~~~ 150 (271)
.++++++.... ....++.++..+. +.|.+ . .+.....+..+ .+...+.++.|+
T Consensus 256 --~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~s 332 (543)
T 1nir_A 256 --ETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWD 332 (543)
T ss_dssp --TTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEEC
T ss_pred --cccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceEC
Confidence 67766655421 1223344344433 56666 2 22211112233 356678899999
Q ss_pred cCCCCCCcEEEEE-eCCCeEEEEEcCCCceeeeeeec----cCCCCeEEEEEecC-CCEEEEEE-CCCcEEEEEeCCCCc
Q psy13856 151 PSWGLSKCMIASC-SQDRKVIIWTSNDYVTWTPFIMN----TFDDVVWNVSWSLT-GDILTVSC-GDNSVSLWKENTDGA 223 (271)
Q Consensus 151 p~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~----~h~~~v~~v~~~~~-g~~l~s~s-~D~~v~iw~~~~~~~ 223 (271)
| ++++++++ ..+++|.+||..+++. ...+. .|.+....+ ++|+ +.+++++. .|++|.+|+..+.+.
T Consensus 333 p----dg~~l~va~~~~~~v~v~D~~tg~l--~~~i~~g~~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~ 405 (543)
T 1nir_A 333 S----SHRYFMTAANNSNKVAVIDSKDRRL--SALVDVGKTPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNH 405 (543)
T ss_dssp T----TSCEEEEEEGGGTEEEEEETTTTEE--EEEEECSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTC
T ss_pred C----CCCEEEEEecCCCeEEEEECCCCeE--EEeeccCCCCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCC
Confidence 9 68876654 4689999999999875 44443 265544443 4777 66677775 589999999987433
Q ss_pred ----eeEEEEecccchh
Q psy13856 224 ----WQCITEMGKTSEQ 236 (271)
Q Consensus 224 ----~~~~~~~~~~~~~ 236 (271)
|+++.++..+...
T Consensus 406 ~~~~~~~v~~l~~~g~~ 422 (543)
T 1nir_A 406 PQYAWKKVAELQGQGGG 422 (543)
T ss_dssp TTTBTSEEEEEECSCSC
T ss_pred chhcCeEEEEEEcCCCC
Confidence 8999999876543
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.60 E-value=7.4e-13 Score=109.14 Aligned_cols=192 Identities=11% Similarity=0.057 Sum_probs=123.4
Q ss_pred CCCCCEEEEccC---CCeEEeccc-------eeeeccccccccccceEEEEcCCCCeEEEEe-CCCcEEEEEeecCCCCc
Q psy13856 32 LRIGHTLISCDT---QAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSATSS-FHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 32 ~~~g~~l~s~s~---d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~~~d~~~~~~~~ 100 (271)
.|||+ |++++. ++.|.+|++ +..+..+... +..++|+|++++|++++ .++.+++|+........
T Consensus 48 spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~----p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~ 122 (347)
T 3hfq_A 48 SAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTP----PAYVAVDEARQLVYSANYHKGTAEVMKIAADGALT 122 (347)
T ss_dssp CTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCC----CSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEE
T ss_pred ccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCC----CEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCee
Confidence 46888 444443 689999998 2233345556 88999999999888887 78999999983111222
Q ss_pred eeeccc--------------eeeEEEeeccceee-----eEEEE--ee-CCceEEeEEecCC-CcceEEEEEccCCCCCC
Q psy13856 101 CLQPKY--------------FKLTVYSTKLTRIL-----ILVRI--CG-GDKWIEETKLENH-SDWVRDVAWAPSWGLSK 157 (271)
Q Consensus 101 ~~~~~~--------------~~~~~~~~~~~~l~-----~~v~i--~~-~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~~ 157 (271)
.+.... .....++.+++.++ +.+.+ .. .+.......+..+ ......++|+| |+
T Consensus 123 ~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp----dg 198 (347)
T 3hfq_A 123 LTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP----DG 198 (347)
T ss_dssp EEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT----TS
T ss_pred ecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC----CC
Confidence 222111 11255666777444 56666 22 3433333333333 33677899999 68
Q ss_pred cEEEE-EeCCCeEEEEEcCC--CceeeeeeeccCC------CCeEEEEEecCCCEE-EEEECCCcEEEEEeCCCCceeEE
Q psy13856 158 CMIAS-CSQDRKVIIWTSND--YVTWTPFIMNTFD------DVVWNVSWSLTGDIL-TVSCGDNSVSLWKENTDGAWQCI 227 (271)
Q Consensus 158 ~~l~s-~~~dg~i~iwd~~~--~~~~~~~~~~~h~------~~v~~v~~~~~g~~l-~s~s~D~~v~iw~~~~~~~~~~~ 227 (271)
++++. +..++.+.+|++.. +.......+.... ..+..++|+|+|++| ++...++.|.+|+++..+.+..+
T Consensus 199 ~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~ 278 (347)
T 3hfq_A 199 QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLI 278 (347)
T ss_dssp SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEe
Confidence 85544 56789999999875 3321122222222 358899999999987 45566899999999865566666
Q ss_pred EEecc
Q psy13856 228 TEMGK 232 (271)
Q Consensus 228 ~~~~~ 232 (271)
..+..
T Consensus 279 ~~~~~ 283 (347)
T 3hfq_A 279 QQIST 283 (347)
T ss_dssp EEEEC
T ss_pred EEEec
Confidence 66654
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-13 Score=108.50 Aligned_cols=164 Identities=11% Similarity=0.004 Sum_probs=117.7
Q ss_pred EccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC-Cceeecc------cee
Q psy13856 40 SCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS-PACLQPK------YFK 108 (271)
Q Consensus 40 s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~-~~~~~~~------~~~ 108 (271)
+++.|+.|++||. ...+..|... +.+++|+|++++|++++ ++.|++||. .+ ++..... ...
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~~~~~~----v~~~~~spdg~~l~~~~-~~~i~~~d~---~~~~~~~~~~~~~~~~~~~ 88 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVWQTPEL----FEAPNWSPDGKYLLLNS-EGLLYRLSL---AGDPSPEKVDTGFATICNN 88 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEEEESSC----CEEEEECTTSSEEEEEE-TTEEEEEES---SSCCSCEECCCTTCCCBCS
T ss_pred CCCcceeEEEEeCCCCceeeeccCCcc----eEeeEECCCCCEEEEEc-CCeEEEEeC---CCCCCceEecccccccccc
Confidence 4568899999998 4556678888 99999999999999986 789999998 44 4443332 113
Q ss_pred eEEEeeccceee--e-----EEEE---eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEE-EEeCCCeEEEEEcCCC
Q psy13856 109 LTVYSTKLTRIL--I-----LVRI---CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIA-SCSQDRKVIIWTSNDY 177 (271)
Q Consensus 109 ~~~~~~~~~~l~--~-----~v~i---~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~-s~~~dg~i~iwd~~~~ 177 (271)
...++.+++.++ . ...+ .... .....+..+ ..+..++|+| ++.+|+ +++.|+.+++|++...
T Consensus 89 ~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~-~~~~~~~~sp----dg~~l~~~~~~~~~~~l~~~~~~ 161 (297)
T 2ojh_A 89 DHGISPDGALYAISDKVEFGKSAIYLLPSTG--GTPRLMTKN-LPSYWHGWSP----DGKSFTYCGIRDQVFDIYSMDID 161 (297)
T ss_dssp CCEECTTSSEEEEEECTTTSSCEEEEEETTC--CCCEECCSS-SSEEEEEECT----TSSEEEEEEEETTEEEEEEEETT
T ss_pred ceEECCCCCEEEEEEeCCCCcceEEEEECCC--CceEEeecC-CCccceEECC----CCCEEEEEECCCCceEEEEEECC
Confidence 356777777776 1 2333 2222 223344433 3488999999 677766 7888999999996432
Q ss_pred ceeeeeeeccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeC
Q psy13856 178 VTWTPFIMNTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKEN 219 (271)
Q Consensus 178 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~ 219 (271)
... ...+..+...+.+++|+|+|++|+.++ .|+.+++|+++
T Consensus 162 ~~~-~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~ 203 (297)
T 2ojh_A 162 SGV-ETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVR 203 (297)
T ss_dssp TCC-EEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCc-ceEcccCCCccccceECCCCCEEEEEecCCCCccEEEEC
Confidence 211 455667888999999999999888776 48999999987
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=9.5e-14 Score=130.58 Aligned_cols=174 Identities=10% Similarity=-0.034 Sum_probs=128.8
Q ss_pred CCCCCCCEEEEccCCCeEEeccc----eeeecc-----------ccccccccceEEEEc-CCCCeEEEEeCCCcEEEEEe
Q psy13856 30 SPLRIGHTLISCDTQAHIGIRST----ISLLQG-----------SVYLRRESNKAGALS-PKLNRSATSSFHEAAKHLGT 93 (271)
Q Consensus 30 ~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~-----------h~~~~~~~i~~~~~s-~~~~~l~s~s~d~~i~~~d~ 93 (271)
...|||+.|+.+. ++.|.+|+. +..+.. |... +.+++|+ |||+.|++++ ++.+++|+.
T Consensus 251 ~~SpDG~~la~~~-~~~i~~~d~~~~~l~~l~~~~~~~~~~~~~~~~~----v~~~~~S~pdG~~la~~~-~~~i~~~~~ 324 (1045)
T 1k32_A 251 HLNTDGRRILFSK-GGSIYIFNPDTEKIEKIEIGDLESPEDRIISIPS----KFAEDFSPLDGDLIAFVS-RGQAFIQDV 324 (1045)
T ss_dssp EEEESSSCEEEEE-TTEEEEECTTTCCEEECCCCCCCBCCSEEEECGG----GGEEEEEECGGGCEEEEE-TTEEEEECT
T ss_pred eEcCCCCEEEEEe-CCEEEEecCCceEeeeeccCcccccccccccccc----cceeeecCCCCCEEEEEE-cCEEEEEcC
Confidence 3457999888875 799999997 333333 3335 8899999 9999999887 788989987
Q ss_pred ecCCCCceeeccc-----eeeEEEeeccceee-----eEEE-E-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEE
Q psy13856 94 VQSSSPACLQPKY-----FKLTVYSTKLTRIL-----ILVR-I-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIA 161 (271)
Q Consensus 94 ~~~~~~~~~~~~~-----~~~~~~~~~~~~l~-----~~v~-i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~ 161 (271)
..+....... .....++ +++.++ ..+. + ...+ .....+.+|...+..++|+| |+.+|+
T Consensus 325 ---~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~--~~~~~l~~~~~~~~~~~~Sp----DG~~la 394 (1045)
T 1k32_A 325 ---SGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT--GKAEKFEENLGNVFAMGVDR----NGKFAV 394 (1045)
T ss_dssp ---TSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT--CCEEECCCCCCSEEEEEECT----TSSEEE
T ss_pred ---CCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC--CCceEecCCccceeeeEECC----CCCEEE
Confidence 4444433221 1234455 666555 4555 5 2222 12334447888999999999 799999
Q ss_pred EEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCC----------cEEEEEeCCC
Q psy13856 162 SCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDN----------SVSLWKENTD 221 (271)
Q Consensus 162 s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~----------~v~iw~~~~~ 221 (271)
+++.++.+++||+.+++. .....+|...+.+++|+|||++|++++.++ .|++||+.++
T Consensus 395 ~~~~~~~v~~~d~~tg~~--~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g 462 (1045)
T 1k32_A 395 VANDRFEIMTVDLETGKP--TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGR 462 (1045)
T ss_dssp EEETTSEEEEEETTTCCE--EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTT
T ss_pred EECCCCeEEEEECCCCce--EEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCC
Confidence 999999999999998875 455568888999999999999999887654 8999998764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.58 E-value=3.7e-12 Score=104.95 Aligned_cols=190 Identities=7% Similarity=0.010 Sum_probs=122.7
Q ss_pred CCCCCEEEEcc-CCCeEEeccc-----eeeecc--cccc------ccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCC
Q psy13856 32 LRIGHTLISCD-TQAHIGIRST-----ISLLQG--SVYL------RRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 32 ~~~g~~l~s~s-~d~~i~lwd~-----~~~~~~--h~~~------~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
.|||++|++++ .++.|++|++ ...+.. +.+. ....+.+++|+|+|+.+++...++.+++|++. .
T Consensus 94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~--~ 171 (347)
T 3hfq_A 94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVS--D 171 (347)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEEC--T
T ss_pred CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEEC--C
Confidence 47999777777 7899999997 111111 1100 01126789999999966666778899999983 1
Q ss_pred CCceeecc--------ceeeEEEeeccceee------eEEEE--ee--CCceEEeEEecCCC------cceEEEEEccCC
Q psy13856 98 SPACLQPK--------YFKLTVYSTKLTRIL------ILVRI--CG--GDKWIEETKLENHS------DWVRDVAWAPSW 153 (271)
Q Consensus 98 ~~~~~~~~--------~~~~~~~~~~~~~l~------~~v~i--~~--~~~~~~~~~~~~h~------~~v~~v~~~p~~ 153 (271)
.+...... ......++.++++++ +.+.+ .. .+.+.....+.... ..+..++|+|
T Consensus 172 ~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~sp-- 249 (347)
T 3hfq_A 172 AGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSH-- 249 (347)
T ss_dssp TSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECT--
T ss_pred CCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECC--
Confidence 33332111 112346777777554 55666 22 34444444444332 4588999999
Q ss_pred CCCCcEE-EEEeCCCeEEEEEcCCC-ceeeeeeeccCCCCeEEEEEecCCCEEEEEECC-CcEEEEEeCCC-CceeEE
Q psy13856 154 GLSKCMI-ASCSQDRKVIIWTSNDY-VTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD-NSVSLWKENTD-GAWQCI 227 (271)
Q Consensus 154 ~~~~~~l-~s~~~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-~~v~iw~~~~~-~~~~~~ 227 (271)
|+++| +++..++.|.+|++... .......+..+...+..++|+|+|++|++++.+ +.|.+|+++.. +....+
T Consensus 250 --dG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~~ 325 (347)
T 3hfq_A 250 --DGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSLL 325 (347)
T ss_dssp --TSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEE
T ss_pred --CCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEec
Confidence 68866 66667899999999733 221234455566678899999999998888764 89999977532 344433
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-13 Score=110.52 Aligned_cols=179 Identities=7% Similarity=-0.030 Sum_probs=122.4
Q ss_pred CCCCCCEEEEcc------------CCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEe
Q psy13856 31 PLRIGHTLISCD------------TQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGT 93 (271)
Q Consensus 31 ~~~~g~~l~s~s------------~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~ 93 (271)
..|||+.+++++ .++.|.+||. ...+.. ... +.+++|+|++++|+++ ++.+++||.
T Consensus 89 ~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~----~~~~~~s~dg~~l~~~--~~~i~~~d~ 161 (337)
T 1pby_B 89 LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQ----ITMLAWARDGSKLYGL--GRDLHVMDP 161 (337)
T ss_dssp ECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSS----CCCEEECTTSSCEEEE--SSSEEEEET
T ss_pred ECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCC----cceeEECCCCCEEEEe--CCeEEEEEC
Confidence 357898888886 5799999998 233332 334 6889999999988887 688999998
Q ss_pred ecCCCCceeeccce----eeEEEeeccceee------e-----------------------EEEE--eeCCceEEeEEec
Q psy13856 94 VQSSSPACLQPKYF----KLTVYSTKLTRIL------I-----------------------LVRI--CGGDKWIEETKLE 138 (271)
Q Consensus 94 ~~~~~~~~~~~~~~----~~~~~~~~~~~l~------~-----------------------~v~i--~~~~~~~~~~~~~ 138 (271)
.+++....... ....++.+++.+. + .+.+ ...+... ...+.
T Consensus 162 ---~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~ 237 (337)
T 1pby_B 162 ---EAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVR 237 (337)
T ss_dssp ---TTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEE
T ss_pred ---CCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecC
Confidence 55555433211 1112333333332 1 2344 2233222 33344
Q ss_pred CCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEe
Q psy13856 139 NHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 139 ~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~ 218 (271)
.+...+.+++|+| ++.+++++ ++.|.+||..+++. ...+. ....+.+++|+|+|++|++++.|+.|++||+
T Consensus 238 ~~~~~~~~~~~s~----dg~~l~~~--~~~v~~~d~~~~~~--~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~ 308 (337)
T 1pby_B 238 IMDVFYFSTAVNP----AKTRAFGA--YNVLESFDLEKNAS--IKRVP-LPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308 (337)
T ss_dssp ECSSCEEEEEECT----TSSEEEEE--ESEEEEEETTTTEE--EEEEE-CSSCCCEEEECTTSCEEEEESBSSEEEEEET
T ss_pred CCCCceeeEEECC----CCCEEEEe--CCeEEEEECCCCcC--cceec-CCCceeeEEECCCCCEEEEEcCCCcEEEEEC
Confidence 5667788999999 68888887 79999999988764 33333 2346789999999999999988999999999
Q ss_pred CCCCceeEEEEecc
Q psy13856 219 NTDGAWQCITEMGK 232 (271)
Q Consensus 219 ~~~~~~~~~~~~~~ 232 (271)
.++ +.+..+..
T Consensus 309 ~~~---~~~~~~~~ 319 (337)
T 1pby_B 309 ETL---EKKGQVDL 319 (337)
T ss_dssp TTC---CEEEEEEC
T ss_pred cCC---cEEEEEEc
Confidence 877 55555544
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=2.7e-13 Score=111.06 Aligned_cols=150 Identities=10% Similarity=-0.004 Sum_probs=104.6
Q ss_pred EEEEccCCCeEEeccc-----eee--eccccccccccceEEEEcCCCCeEEEEeCC-CcEEEEEeecCCCCceeecccee
Q psy13856 37 TLISCDTQAHIGIRST-----ISL--LQGSVYLRRESNKAGALSPKLNRSATSSFH-EAAKHLGTVQSSSPACLQPKYFK 108 (271)
Q Consensus 37 ~l~s~s~d~~i~lwd~-----~~~--~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d-~~i~~~d~~~~~~~~~~~~~~~~ 108 (271)
++++++.|+.|++|++ ... ...|... +.+++|+|++++|++++.+ +.+++|++ ..
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~----~~~~~~spdg~~l~~~~~~~~~v~~~~~---~~---------- 69 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQ----VQPMVVSPDKRYLYVGVRPEFRVLAYRI---AP---------- 69 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSC----CCCEEECTTSSEEEEEETTTTEEEEEEE---CT----------
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCC----CceEEECCCCCEEEEeecCCCeEEEEEe---cC----------
Confidence 4555588999999987 111 1235555 8899999999998888877 89999998 20
Q ss_pred eEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe-CCCeEEEEEcCCCceee-eeeec
Q psy13856 109 LTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS-QDRKVIIWTSNDYVTWT-PFIMN 186 (271)
Q Consensus 109 ~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~-~~~~~ 186 (271)
..+....+..+..+. .+..++|+| ++.++++++ .++.|.+||+..+.... ...+.
T Consensus 70 ------------------~~~~~~~~~~~~~~~-~~~~~~~s~----dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 126 (343)
T 1ri6_A 70 ------------------DDGALTFAAESALPG-SLTHISTDH----QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE 126 (343)
T ss_dssp ------------------TTCCEEEEEEEECSS-CCSEEEECT----TSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC
T ss_pred ------------------CCCceeeccccccCC-CCcEEEEcC----CCCEEEEEecCCCeEEEEECCCCcccccccccc
Confidence 012223334444333 788999999 688776655 48999999995332111 22333
Q ss_pred cCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeCCCCceeEE
Q psy13856 187 TFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKENTDGAWQCI 227 (271)
Q Consensus 187 ~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~~~~~~~~~ 227 (271)
....+.+++|+|+|+++++++ .|+.|++|++...+.....
T Consensus 127 -~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 167 (343)
T 1ri6_A 127 -GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQ 167 (343)
T ss_dssp -CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEE
T ss_pred -CCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeee
Confidence 334688999999999888887 7999999999875555443
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.8e-14 Score=126.40 Aligned_cols=182 Identities=14% Similarity=0.013 Sum_probs=127.0
Q ss_pred cccCCCCCCCEEEEccC-CC-----eEEeccc-----eeeeccccccc--------------------cccceEEEEcCC
Q psy13856 27 YTESPLRIGHTLISCDT-QA-----HIGIRST-----ISLLQGSVYLR--------------------RESNKAGALSPK 75 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~-d~-----~i~lwd~-----~~~~~~h~~~~--------------------~~~i~~~~~s~~ 75 (271)
......|||++|++++. |+ .|++||+ ...+..+.... ...+.+++||||
T Consensus 40 ~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpD 119 (741)
T 2ecf_A 40 MKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPD 119 (741)
T ss_dssp EEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTT
T ss_pred CCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCC
Confidence 34455679999999998 88 9999998 23333221100 012788999999
Q ss_pred CCeEEEEeCCCcEEEEEeecCCCC---ceeecc----ceeeEEEeeccceee----eEEEE-e-eCCceEEeEEecCCCc
Q psy13856 76 LNRSATSSFHEAAKHLGTVQSSSP---ACLQPK----YFKLTVYSTKLTRIL----ILVRI-C-GGDKWIEETKLENHSD 142 (271)
Q Consensus 76 ~~~l~s~s~d~~i~~~d~~~~~~~---~~~~~~----~~~~~~~~~~~~~l~----~~v~i-~-~~~~~~~~~~~~~h~~ 142 (271)
|++|++++. +.|++||. .++ ...... ......++++++.++ +.|.+ . ..+ ........+..
T Consensus 120 g~~l~~~~~-~~i~~~d~---~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~~~i~~~d~~~g--~~~~~~~~~~~ 193 (741)
T 2ecf_A 120 AQRLLFPLG-GELYLYDL---KQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRGRNLWVIDLASG--RQMQLTADGST 193 (741)
T ss_dssp SSEEEEEET-TEEEEEES---SSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEETTEEEEEETTTT--EEEECCCCCCS
T ss_pred CCEEEEEeC-CcEEEEEC---CCCCcceEEEcccCCcccccccCCCCCCEEEEEeCCcEEEEecCCC--CEEEeccCCcc
Confidence 999999886 89999998 444 332222 235567888898887 56776 2 333 33333333332
Q ss_pred c----------------eEEEEEccCCCCCCcEEEEEeCCC---------------------------------eEEEEE
Q psy13856 143 W----------------VRDVAWAPSWGLSKCMIASCSQDR---------------------------------KVIIWT 173 (271)
Q Consensus 143 ~----------------v~~v~~~p~~~~~~~~l~s~~~dg---------------------------------~i~iwd 173 (271)
. +.++.|+| |+++|+.++.|+ .|.+||
T Consensus 194 ~~~~g~~~~v~~~~~~~~~~~~~Sp----Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d 269 (741)
T 2ecf_A 194 TIGNGIAEFVADEEMDRHTGYWWAP----DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVIS 269 (741)
T ss_dssp SEEESCCCHHHHHHSCCCCSEEECT----TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEEC
T ss_pred ceeccccceeeeeccccccceEECC----CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEE
Confidence 2 47899999 799999988765 889999
Q ss_pred cCC-Cceeeeeeec--cCCCCeEEEEEecCCCEEEEEEC-----CCcEEEEEeCCC
Q psy13856 174 SND-YVTWTPFIMN--TFDDVVWNVSWSLTGDILTVSCG-----DNSVSLWKENTD 221 (271)
Q Consensus 174 ~~~-~~~~~~~~~~--~h~~~v~~v~~~~~g~~l~s~s~-----D~~v~iw~~~~~ 221 (271)
+.+ ++. ..... .|...+..++| |||++|++++. +..|++||+.++
T Consensus 270 ~~~~~~~--~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g 322 (741)
T 2ecf_A 270 PAEQAQT--QWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN 322 (741)
T ss_dssp SSTTCCC--EEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC
T ss_pred CCCCCce--EEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC
Confidence 987 764 22222 57788999999 99999987764 567999998865
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.54 E-value=5.1e-13 Score=121.03 Aligned_cols=177 Identities=10% Similarity=-0.033 Sum_probs=126.6
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc--e-----eeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST--I-----SLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~--~-----~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
......|||++|++++. +.|.+||+ - ..+..|... +..++|||||++|+.++ ++.|++||. .++
T Consensus 112 ~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~----~~~~~~SPDG~~la~~~-~~~i~~~d~---~~g 182 (741)
T 2ecf_A 112 VDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGF----ATDAKLSPKGGFVSFIR-GRNLWVIDL---ASG 182 (741)
T ss_dssp CCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSC----EEEEEECTTSSEEEEEE-TTEEEEEET---TTT
T ss_pred ceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcc----cccccCCCCCCEEEEEe-CCcEEEEec---CCC
Confidence 44455689999999987 99999998 2 234556666 89999999999999887 458999998 555
Q ss_pred ceeeccc---------------------eeeEEEeeccceee-----e--------------------------------
Q psy13856 100 ACLQPKY---------------------FKLTVYSTKLTRIL-----I-------------------------------- 121 (271)
Q Consensus 100 ~~~~~~~---------------------~~~~~~~~~~~~l~-----~-------------------------------- 121 (271)
....... .....++++++.++ +
T Consensus 183 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~ 262 (741)
T 2ecf_A 183 RQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQ 262 (741)
T ss_dssp EEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCE
T ss_pred CEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCe
Confidence 5443321 13466788888776 1
Q ss_pred -EEEE--eeC-CceEEeEEec--CCCcceEEEEEccCCCCCCcEEEEEeC-----CCeEEEEEcCCCceeeeeeeccCCC
Q psy13856 122 -LVRI--CGG-DKWIEETKLE--NHSDWVRDVAWAPSWGLSKCMIASCSQ-----DRKVIIWTSNDYVTWTPFIMNTFDD 190 (271)
Q Consensus 122 -~v~i--~~~-~~~~~~~~~~--~h~~~v~~v~~~p~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~~h~~ 190 (271)
.+.+ ... + +...... .|...+..++| | |+++|+.++. +..|++||..++.. ...+..+..
T Consensus 263 ~~l~~~d~~~~~--~~~~~~~~~~~~~~~~~~~~-p----Dg~~l~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~ 333 (741)
T 2ecf_A 263 VKLGVISPAEQA--QTQWIDLGKEQDIYLARVNW-R----DPQHLSFQRQSRDQKKLDLVEVTLASNQQ--RVLAHETSP 333 (741)
T ss_dssp EEEEEECSSTTC--CCEEECCCSCSSEEEEEEEE-E----ETTEEEEEEEETTSSEEEEEEEETTTCCE--EEEEEEECS
T ss_pred eEEEEEECCCCC--ceEEecCCCCcceEEEEEEe-C----CCCEEEEEEecccCCeEEEEEEECCCCce--EEEEEcCCC
Confidence 3444 223 3 2222222 47788999999 9 7898887654 67899999998875 344444432
Q ss_pred ----CeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 191 ----VVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 191 ----~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.+..++|+|+|+++++++.|+.++||.++..
T Consensus 334 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~ 368 (741)
T 2ecf_A 334 TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSK 368 (741)
T ss_dssp SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSS
T ss_pred CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCC
Confidence 4568999999999999999998888887643
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.53 E-value=2.2e-12 Score=106.12 Aligned_cols=181 Identities=8% Similarity=0.029 Sum_probs=126.3
Q ss_pred cccCCCCCCCEEEEccC-------CCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEE-EEeCCCcEEEEEe
Q psy13856 27 YTESPLRIGHTLISCDT-------QAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSA-TSSFHEAAKHLGT 93 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~-------d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~-s~s~d~~i~~~d~ 93 (271)
+.....++|+.+++++. ++.|.+||. ...+.. ... +..++|+|++++++ +...++.|.+||.
T Consensus 44 ~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 44 YEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHN-DLK----PFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp EEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEE-SSC----CCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred cceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEec-CCC----cceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 33444568887777663 568999998 333332 233 67899999999554 5556799999998
Q ss_pred ecCCCCceeeccce--------------eeEEEeeccceee-------eEEEEeeCCceEEeEEecCCCcceEEEEEccC
Q psy13856 94 VQSSSPACLQPKYF--------------KLTVYSTKLTRIL-------ILVRICGGDKWIEETKLENHSDWVRDVAWAPS 152 (271)
Q Consensus 94 ~~~~~~~~~~~~~~--------------~~~~~~~~~~~l~-------~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~ 152 (271)
.+++....... ....++.+++.+. +.|.+.+....+....+..+...+.+++|+|
T Consensus 119 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~- 194 (353)
T 3vgz_A 119 ---KTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS- 194 (353)
T ss_dssp ---TTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-
T ss_pred ---CCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-
Confidence 66665544321 2245566666554 3455522222256666665666688999999
Q ss_pred CCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeec----cCCCCeEEEEEecCCCEEEEEEC-CCcEEEEEeCCC
Q psy13856 153 WGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMN----TFDDVVWNVSWSLTGDILTVSCG-DNSVSLWKENTD 221 (271)
Q Consensus 153 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~h~~~v~~v~~~~~g~~l~s~s~-D~~v~iw~~~~~ 221 (271)
++.++++++.++.+.+||..+++. ...+. ++...+..++|+|+|++++.++. ++.|.+||+.++
T Consensus 195 ---dg~~l~~~~~~~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~ 263 (353)
T 3vgz_A 195 ---EGKRLYTTNADGELITIDTADNKI--LSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG 263 (353)
T ss_dssp ---TTTEEEEECTTSEEEEEETTTTEE--EEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred ---CCCEEEEEcCCCeEEEEECCCCeE--EEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence 689999999999999999998775 33332 24556888999999998777765 589999999876
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.3e-11 Score=100.71 Aligned_cols=183 Identities=9% Similarity=0.002 Sum_probs=122.8
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeC-CCcEEEEEeecCCCCce-eecc-
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSF-HEAAKHLGTVQSSSPAC-LQPK- 105 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~~~d~~~~~~~~~-~~~~- 105 (271)
.+..+++++.++.|++||. ...+..+... + .++|+|+++++++++. ++.|++||. .+++. ....
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~----~-~~~~s~dg~~l~~~~~~~~~i~~~d~---~~~~~~~~~~~ 80 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDF----V-DTAITSDCSNVVVTSDFCQTLVQIET---QLEPPKVVAIQ 80 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCE----E-EEEECSSSCEEEEEESTTCEEEEEEC---SSSSCEEEEEE
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCCc----c-eEEEcCCCCEEEEEeCCCCeEEEEEC---CCCceeEEecc
Confidence 3456889999999999998 3444445555 6 9999999997766665 889999998 55554 3222
Q ss_pred --c-eee-EEEeeccceee----e----EEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCc-EEEEEeCCCe-E
Q psy13856 106 --Y-FKL-TVYSTKLTRIL----I----LVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC-MIASCSQDRK-V 169 (271)
Q Consensus 106 --~-~~~-~~~~~~~~~l~----~----~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~-~l~s~~~dg~-i 169 (271)
. ... ..++.++++++ . .+.+ ...+ +.+..+.. .....+++|+| +++ +++++..++. +
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~--~~~~~~~~-~~~~~~~~~sp----dg~~l~~~~~~~~~~i 153 (331)
T 3u4y_A 81 EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN--KFISTIPI-PYDAVGIAISP----NGNGLILIDRSSANTV 153 (331)
T ss_dssp ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT--EEEEEEEC-CTTEEEEEECT----TSSCEEEEEETTTTEE
T ss_pred cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC--CeEEEEEC-CCCccceEECC----CCCEEEEEecCCCceE
Confidence 1 123 45667777666 3 7887 2334 55555553 34568999999 576 4555566688 9
Q ss_pred EEEEcCCCceee-e-eeeccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeCCCCceeEEEEec
Q psy13856 170 IIWTSNDYVTWT-P-FIMNTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 170 ~iwd~~~~~~~~-~-~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
.+|++....... . ............++|+|+|++++.++ .++.|++||+.++.....+..+.
T Consensus 154 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~ 218 (331)
T 3u4y_A 154 RRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVG 218 (331)
T ss_dssp EEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEE
T ss_pred EEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeecc
Confidence 999998643210 1 11223345689999999999665555 58999999998765422244443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-13 Score=124.63 Aligned_cols=179 Identities=10% Similarity=0.047 Sum_probs=120.8
Q ss_pred ccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeC---------CCcEEEEEe
Q psy13856 28 TESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSF---------HEAAKHLGT 93 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~---------d~~i~~~d~ 93 (271)
.....|||++++++ .|+.|++||. ...+..|.. ....+.+++|||||++|+.++. ++.+++||+
T Consensus 20 ~~~~s~dg~~~~~~-~d~~i~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~ 97 (719)
T 1z68_A 20 FPNWISGQEYLHQS-ADNNIVLYNIETGQSYTILSNRTM-KSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDL 97 (719)
T ss_dssp CCEESSSSEEEEEC-TTSCEEEEESSSCCEEEEECHHHH-HTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEET
T ss_pred ccEECCCCeEEEEc-CCCCEEEEEcCCCcEEEEEccccc-cccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEEC
Confidence 44456789766655 5899999998 334444433 0112789999999999998876 789999998
Q ss_pred ecCCCCce---eecc-ceeeEEEeeccceee----eEEEE--eeCCceEEeEEe-cCCCcce-----------------E
Q psy13856 94 VQSSSPAC---LQPK-YFKLTVYSTKLTRIL----ILVRI--CGGDKWIEETKL-ENHSDWV-----------------R 145 (271)
Q Consensus 94 ~~~~~~~~---~~~~-~~~~~~~~~~~~~l~----~~v~i--~~~~~~~~~~~~-~~h~~~v-----------------~ 145 (271)
.+++. .... ......++++++.++ +.|++ ...+ ...+.. .++...| .
T Consensus 98 ---~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~~~~i~~~~~~~g--~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~ 172 (719)
T 1z68_A 98 ---SNGEFVRGNELPRPIQYLCWSPVGSKLAYVYQNNIYLKQRPGD--PPFQITFNGRENKIFNGIPDWVYEEEMLATKY 172 (719)
T ss_dssp ---TTTEECCSSCCCSSBCCEEECSSTTCEEEEETTEEEEESSTTS--CCEECCCCCBTTTEEESSCCHHHHHHTTCSSC
T ss_pred ---CCCccccceecCcccccceECCCCCEEEEEECCeEEEEeCCCC--CcEEEecCCCcCCeEcccccceeeeecccCcc
Confidence 66655 2222 345678899999888 67777 2233 222111 2222222 4
Q ss_pred EEEEccCCCCCCcEEEEEeCCC----------------------------------eEEEEEcCCCcee---ee---eee
Q psy13856 146 DVAWAPSWGLSKCMIASCSQDR----------------------------------KVIIWTSNDYVTW---TP---FIM 185 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~dg----------------------------------~i~iwd~~~~~~~---~~---~~~ 185 (271)
+++|+| ||++|+.++.|. .|++||+.++... .. ..+
T Consensus 173 ~~~wSP----DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~ 248 (719)
T 1z68_A 173 ALWWSP----NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMI 248 (719)
T ss_dssp CEEECT----TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHH
T ss_pred cEEECC----CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccC
Confidence 899999 799999988652 7889999876530 01 123
Q ss_pred ccCCCCeEEEEEecCCCEEEEEECC----CcEEEEE
Q psy13856 186 NTFDDVVWNVSWSLTGDILTVSCGD----NSVSLWK 217 (271)
Q Consensus 186 ~~h~~~v~~v~~~~~g~~l~s~s~D----~~v~iw~ 217 (271)
.+|...+.+++|+||++++++.... ..|.+||
T Consensus 249 ~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d 284 (719)
T 1z68_A 249 ASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICD 284 (719)
T ss_dssp HTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEE
T ss_pred CCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEc
Confidence 4678889999999998877775432 2488888
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=2.5e-11 Score=99.74 Aligned_cols=185 Identities=5% Similarity=-0.067 Sum_probs=122.7
Q ss_pred CCCCCC-EEEEccCCCeEEeccc-----eeeeccccccc-----cccceEEEEcCCCCeEEEEe--CCCcEEEEEeecCC
Q psy13856 31 PLRIGH-TLISCDTQAHIGIRST-----ISLLQGSVYLR-----RESNKAGALSPKLNRSATSS--FHEAAKHLGTVQSS 97 (271)
Q Consensus 31 ~~~~g~-~l~s~s~d~~i~lwd~-----~~~~~~h~~~~-----~~~i~~~~~s~~~~~l~s~s--~d~~i~~~d~~~~~ 97 (271)
..++|+ ++++...++.|.+||. +..+..+.... ...+.+++|+|++++++.++ .++.|.+||. .
T Consensus 96 ~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~---~ 172 (353)
T 3vgz_A 96 INNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDG---G 172 (353)
T ss_dssp EETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEET---T
T ss_pred ECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcC---C
Confidence 347888 5666677899999998 34443332110 01157899999999877766 4788999998 6
Q ss_pred CCceeeccc-----eeeEEEeeccceee-----eEEEE--eeCCceEEeEEecC----CCcceEEEEEccCCCCCCcEEE
Q psy13856 98 SPACLQPKY-----FKLTVYSTKLTRIL-----ILVRI--CGGDKWIEETKLEN----HSDWVRDVAWAPSWGLSKCMIA 161 (271)
Q Consensus 98 ~~~~~~~~~-----~~~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~----h~~~v~~v~~~p~~~~~~~~l~ 161 (271)
+++...... .....++.+++.++ +.+.+ ..++ +....+.. +...+.+++|+| ++.+++
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~s~----dg~~l~ 246 (353)
T 3vgz_A 173 NIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADN--KILSRKKLLDDGKEHFFINISLDT----ARQRAF 246 (353)
T ss_dssp TTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTT--EEEEEEECCCSSSCCCEEEEEEET----TTTEEE
T ss_pred CCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCC--eEEEEEEcCCCCCCcccceEEECC----CCCEEE
Confidence 666655432 23345666676655 55666 2333 44444432 556788899999 577655
Q ss_pred EEe-CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeCCCCceeEEEEec
Q psy13856 162 SCS-QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 162 s~~-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
.++ .++.|.+||..+++. ...+.... ...++|+|+|++++.++ .++.|.+||..++ +.+..+.
T Consensus 247 ~~~~~~~~v~~~d~~~~~~--~~~~~~~~--~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---~~~~~~~ 311 (353)
T 3vgz_A 247 ITDSKAAEVLVVDTRNGNI--LAKVAAPE--SLAVLFNPARNEAYVTHRQAGKVSVIDAKSY---KVVKTFD 311 (353)
T ss_dssp EEESSSSEEEEEETTTCCE--EEEEECSS--CCCEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEEEE
T ss_pred EEeCCCCEEEEEECCCCcE--EEEEEcCC--CceEEECCCCCEEEEEECCCCeEEEEECCCC---eEEEEEe
Confidence 554 559999999988775 33333222 25699999999766665 6899999999876 4444443
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.8e-12 Score=103.36 Aligned_cols=189 Identities=8% Similarity=-0.011 Sum_probs=120.3
Q ss_pred cCCCCCCCEEEEc-cCCCeEEeccc------eeeeccccccccccceEEEEcCCCCeEEEEeCCC---cEEEEEeecCCC
Q psy13856 29 ESPLRIGHTLISC-DTQAHIGIRST------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHE---AAKHLGTVQSSS 98 (271)
Q Consensus 29 ~~~~~~g~~l~s~-s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~---~i~~~d~~~~~~ 98 (271)
....|+|++++++ ..++.|.+||. ...+..+... ..+++|+|++++++++..++ .|++||. .+
T Consensus 45 ~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~----~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~---~~ 117 (331)
T 3u4y_A 45 TAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSS----MADVDITPDDQFAVTVTGLNHPFNMQSYSF---LK 117 (331)
T ss_dssp EEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSC----CCCEEECTTSSEEEECCCSSSSCEEEEEET---TT
T ss_pred EEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCC----ccceEECCCCCEEEEecCCCCcccEEEEEC---CC
Confidence 3345789855544 45899999998 2233444444 44499999999998655553 8999998 66
Q ss_pred Cceeeccc----eeeEEEeeccceee------eE-EEE---eeCCceEEe-EEecCCCcceEEEEEccCCCCCCcEE-EE
Q psy13856 99 PACLQPKY----FKLTVYSTKLTRIL------IL-VRI---CGGDKWIEE-TKLENHSDWVRDVAWAPSWGLSKCMI-AS 162 (271)
Q Consensus 99 ~~~~~~~~----~~~~~~~~~~~~l~------~~-v~i---~~~~~~~~~-~~~~~h~~~v~~v~~~p~~~~~~~~l-~s 162 (271)
++.+.... .....++++++++. +. +.+ ...+..... ............++|+| +++++ ++
T Consensus 118 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~sp----dg~~l~v~ 193 (331)
T 3u4y_A 118 NKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTP----DGNFAFVA 193 (331)
T ss_dssp TEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECT----TSSEEEEE
T ss_pred CCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECC----CCCEEEEE
Confidence 66655442 23455667776544 33 555 111211111 11223445678999999 67755 55
Q ss_pred EeCCCeEEEEEcCCCceee-eeeeccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeCCCCceeEEEEe
Q psy13856 163 CSQDRKVIIWTSNDYVTWT-PFIMNTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKENTDGAWQCITEM 230 (271)
Q Consensus 163 ~~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~~~~~~~~~~~~ 230 (271)
+..++.|.+||+.+++... ...+. ....+..++|+|+|++++.++ .++.|.+||+.++ +...+..+
T Consensus 194 ~~~~~~v~v~d~~~~~~~~~~~~~~-~~~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~-~~~~~~~~ 261 (331)
T 3u4y_A 194 NLIGNSIGILETQNPENITLLNAVG-TNNLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSG-TLSFVKSF 261 (331)
T ss_dssp ETTTTEEEEEECSSTTSCEEEEEEE-CSSCCCCEEECTTSSEEEEECSSEEEEEEEETTTT-EEEEEEEE
T ss_pred eCCCCeEEEEECCCCcccceeeecc-CCCCCceEEECCCCCEEEEEEcCCCEEEEEECCCC-ceeeeccc
Confidence 5578999999998776411 22233 346678899999999776665 4788999999865 33334444
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.49 E-value=7.6e-11 Score=97.61 Aligned_cols=189 Identities=11% Similarity=-0.014 Sum_probs=120.2
Q ss_pred CCCCCCEEEEccCC----CeEEeccc------ee---eeccccccccccceEEEEcCCCCeEEEEe-CCCcEEEEEeecC
Q psy13856 31 PLRIGHTLISCDTQ----AHIGIRST------IS---LLQGSVYLRRESNKAGALSPKLNRSATSS-FHEAAKHLGTVQS 96 (271)
Q Consensus 31 ~~~~g~~l~s~s~d----~~i~lwd~------~~---~~~~h~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~~~d~~~~ 96 (271)
..|||++|++++.+ +.|.+|++ +. ....+... +..+++ ++++|++++ .++.+.+|++.
T Consensus 57 ~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~----p~~~~~--dg~~l~~~~~~~~~v~~~~~~-- 128 (361)
T 3scy_A 57 PSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGAD----PCYLTT--NGKNIVTANYSGGSITVFPIG-- 128 (361)
T ss_dssp ECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSC----EEEEEE--CSSEEEEEETTTTEEEEEEBC--
T ss_pred ECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCC----cEEEEE--CCCEEEEEECCCCEEEEEEeC--
Confidence 35799988888876 79999987 11 22223333 567777 788777766 68899999983
Q ss_pred CCCceeecc----c--------------e-eeEEEeeccceee------eEEEE--eeCCc-------eEEe----EEec
Q psy13856 97 SSPACLQPK----Y--------------F-KLTVYSTKLTRIL------ILVRI--CGGDK-------WIEE----TKLE 138 (271)
Q Consensus 97 ~~~~~~~~~----~--------------~-~~~~~~~~~~~l~------~~v~i--~~~~~-------~~~~----~~~~ 138 (271)
....+... . + ....+++++++++ +.+.+ ..... +... ....
T Consensus 129 -~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~ 207 (361)
T 3scy_A 129 -QDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKV 207 (361)
T ss_dssp -TTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEEC
T ss_pred -CCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceec
Confidence 22221111 0 0 2256677777554 55665 22211 1111 2223
Q ss_pred CCCcceEEEEEccCCCCCCcEEEEEe-CCCeEEEEEcCCCceeeeeee---ccCCCCeEEEEEecCCCEEEEEECC--Cc
Q psy13856 139 NHSDWVRDVAWAPSWGLSKCMIASCS-QDRKVIIWTSNDYVTWTPFIM---NTFDDVVWNVSWSLTGDILTVSCGD--NS 212 (271)
Q Consensus 139 ~h~~~v~~v~~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~---~~h~~~v~~v~~~~~g~~l~s~s~D--~~ 212 (271)
.+......++|+| ++++++.++ .++.|.+|++.++.......+ ..+......++|+|+|++|+++..+ +.
T Consensus 208 ~~~~~~~~~~~sp----dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~ 283 (361)
T 3scy_A 208 APGSGPRHLIFNS----DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADG 283 (361)
T ss_dssp CTTCCEEEEEECT----TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCE
T ss_pred CCCCCCeEEEEcC----CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCE
Confidence 3455678999999 688777666 689999999986643212222 2334557899999999998776654 89
Q ss_pred EEEEEeC-CCCceeEEEEecc
Q psy13856 213 VSLWKEN-TDGAWQCITEMGK 232 (271)
Q Consensus 213 v~iw~~~-~~~~~~~~~~~~~ 232 (271)
|.+|+++ ..+.+..+..+..
T Consensus 284 i~v~~~~~~~g~~~~~~~~~~ 304 (361)
T 3scy_A 284 VAIFKVDETNGTLTKVGYQLT 304 (361)
T ss_dssp EEEEEECTTTCCEEEEEEEEC
T ss_pred EEEEEEcCCCCcEEEeeEecC
Confidence 9999997 3456666665543
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.49 E-value=5e-12 Score=103.77 Aligned_cols=186 Identities=10% Similarity=-0.031 Sum_probs=117.7
Q ss_pred CCCCCCE-EEEccCCCeEEeccc-----eeeec-cc-----cccccccceEEEEcCCCCeEEEEeCC------------C
Q psy13856 31 PLRIGHT-LISCDTQAHIGIRST-----ISLLQ-GS-----VYLRRESNKAGALSPKLNRSATSSFH------------E 86 (271)
Q Consensus 31 ~~~~g~~-l~s~s~d~~i~lwd~-----~~~~~-~h-----~~~~~~~i~~~~~s~~~~~l~s~s~d------------~ 86 (271)
..|+|+. ++++..++.|.+||. ...+. .+ ... +.+++|+|+|+++++++.+ +
T Consensus 50 ~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~----~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~ 125 (349)
T 1jmx_B 50 MAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRS----MYSFAISPDGKEVYATVNPTQRLNDHYVVKPP 125 (349)
T ss_dssp ECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEEC----SSCEEECTTSSEEEEEEEEEEECSSCEEECCC
T ss_pred ECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccc----ccceEECCCCCEEEEEcccccccccccccCCC
Confidence 3478874 566678899999998 22332 22 223 6789999999999998865 8
Q ss_pred cEEEEEeecCCCCceeecc----ceeeEEEeeccceee--eEEEE--eeCCceEEeEEecC-------------------
Q psy13856 87 AAKHLGTVQSSSPACLQPK----YFKLTVYSTKLTRIL--ILVRI--CGGDKWIEETKLEN------------------- 139 (271)
Q Consensus 87 ~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~l~--~~v~i--~~~~~~~~~~~~~~------------------- 139 (271)
.|.+||..++.....+... ......++.+++.++ +.+.+ ..++ +....+..
T Consensus 126 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~l~~~~~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (349)
T 1jmx_B 126 RLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTG--KYTVALPLRNWNRKGYSAPDVLYFWPH 203 (349)
T ss_dssp EEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEEESSSEEEECTTTC--CEEEEECSTTCCCTTBCCCBCCCCCCC
T ss_pred eEEEEECCCccccceeeeccCCCcccceeECCCCcEEEccCcEEEEeCCCC--ceeccccccccCCccccCccceeeecC
Confidence 9999998322112222211 112233555555333 33443 1122 22222211
Q ss_pred -------------------------------------------------CCcceEEEEEccCCCCCCcEEEEEeCCCeEE
Q psy13856 140 -------------------------------------------------HSDWVRDVAWAPSWGLSKCMIASCSQDRKVI 170 (271)
Q Consensus 140 -------------------------------------------------h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~ 170 (271)
+...+.+++|+|. ++.+++++ ++.|.
T Consensus 204 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~---dg~~l~~~--~~~v~ 278 (349)
T 1jmx_B 204 QSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK---DPNQIYGV--LNRLA 278 (349)
T ss_dssp CCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSS---CTTEEEEE--ESEEE
T ss_pred CCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCC---CCCEEEEE--cCeEE
Confidence 1124456777783 47777777 88999
Q ss_pred EEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 171 IWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 171 iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
+||+.+++. ...+. ....+.+++|+|+|++|++++.++.|++||..+. +.+.+++..
T Consensus 279 ~~d~~~~~~--~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~---~~~~~~~~~ 335 (349)
T 1jmx_B 279 KYDLKQRKL--IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL---EKVKNIKLP 335 (349)
T ss_dssp EEETTTTEE--EEEEE-CSSCCCEEEECSSSSCEEEESBSSEEEEEETTTT---EEEEEEECS
T ss_pred EEECccCeE--EEEEc-CCCCccceEECCCCCEEEEecCCCeEEEEecccc---ceeeeeecC
Confidence 999998764 33333 2345778999999998888888999999999876 566666443
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-12 Score=122.99 Aligned_cols=146 Identities=6% Similarity=-0.080 Sum_probs=118.1
Q ss_pred cccCCCCCCCEEEEccCCCeEE-eccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 27 YTESPLRIGHTLISCDTQAHIG-IRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~-lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
...... ||+.|+.++.++.+. +|+. ...+.+|... +..++|+|||++|++++.++.+++||+ .+
T Consensus 341 ~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~----~~~~~~SpDG~~la~~~~~~~v~~~d~---~t--- 409 (1045)
T 1k32_A 341 VRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN----VFAMGVDRNGKFAVVANDRFEIMTVDL---ET--- 409 (1045)
T ss_dssp EEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCS----EEEEEECTTSSEEEEEETTSEEEEEET---TT---
T ss_pred EeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCccc----eeeeEECCCCCEEEEECCCCeEEEEEC---CC---
Confidence 344455 888899988888888 8887 3444567677 899999999999999999999999998 32
Q ss_pred eeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCC----------eEEE
Q psy13856 102 LQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDR----------KVII 171 (271)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg----------~i~i 171 (271)
+ +....+.+|...+.+++|+| |+++|++++.++ .|++
T Consensus 410 ---------------------------g--~~~~~~~~~~~~v~~~~~Sp----DG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 410 ---------------------------G--KPTVIERSREAMITDFTISD----NSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp ---------------------------C--CEEEEEECSSSCCCCEEECT----TSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred ---------------------------C--ceEEeccCCCCCccceEECC----CCCeEEEEecCccccccCCCCCeEEE
Confidence 2 23333446888899999999 799998887654 8999
Q ss_pred EEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 172 WTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 172 wd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
||+.+++ ...+..|...+..++|+|+|++|+.++.++...+|+..
T Consensus 457 ~d~~~g~---~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~ 501 (1045)
T 1k32_A 457 YDMEGRK---IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRV 501 (1045)
T ss_dssp EETTTTE---EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSS
T ss_pred EECCCCc---EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchh
Confidence 9998865 55667788889999999999999999998888888754
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=2e-12 Score=116.63 Aligned_cols=173 Identities=13% Similarity=0.054 Sum_probs=118.9
Q ss_pred CCCCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC-----Cc
Q psy13856 30 SPLRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS-----PA 100 (271)
Q Consensus 30 ~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~-----~~ 100 (271)
...|| ..++.+. |+.|++||+ ...+..+... +.+++|+|||+.|+.+ .|+.|++|++ .+ ++
T Consensus 88 ~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~~~~----~~~~~~SpdG~~la~~-~~~~i~v~~~---~~~~~~~g~ 157 (706)
T 2z3z_A 88 LDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDTNEE----TASLDFSPVGDRVAYV-RNHNLYIARG---GKLGEGMSR 157 (706)
T ss_dssp EETTT-TEEEEEE-TTEEEEEETTTTEEEEEECCTTC----CTTCEECTTSSEEEEE-ETTEEEEEEC---BCTTSCCCC
T ss_pred EECCC-CeEEEEE-CCEEEEEECCCCceEEccCCccc----ccCCcCCCCCCEEEEE-ECCeEEEEec---CcccccCCC
Confidence 34457 4444443 499999998 4445556666 8899999999999885 7899999998 43 43
Q ss_pred eeecc----c---------------eeeEEEeeccceee-eE-------------------------------------E
Q psy13856 101 CLQPK----Y---------------FKLTVYSTKLTRIL-IL-------------------------------------V 123 (271)
Q Consensus 101 ~~~~~----~---------------~~~~~~~~~~~~l~-~~-------------------------------------v 123 (271)
..... . .....+++++++++ .. +
T Consensus 158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l 237 (706)
T 2z3z_A 158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV 237 (706)
T ss_dssp CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence 33321 1 13556788888777 22 3
Q ss_pred EE--eeCCceEEeEEe--cCCCcceEEEEEccCCCCCCcEEEEEeCCC-----eEEEEEcCCCceeeeeee-ccCCC---
Q psy13856 124 RI--CGGDKWIEETKL--ENHSDWVRDVAWAPSWGLSKCMIASCSQDR-----KVIIWTSNDYVTWTPFIM-NTFDD--- 190 (271)
Q Consensus 124 ~i--~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~-~~h~~--- 190 (271)
.+ ...+ +..... ..|...+.+++|+| |+++|++++.++ .|++||..++... .... ..+..
T Consensus 238 ~~~d~~~~--~~~~~~~~~~~~~~~~~~~~sp----dg~~l~~~~~~~~~~~~~v~~~d~~~g~~~-~~~~~~~~~~~~~ 310 (706)
T 2z3z_A 238 GIYHLATG--KTVYLQTGEPKEKFLTNLSWSP----DENILYVAEVNRAQNECKVNAYDAETGRFV-RTLFVETDKHYVE 310 (706)
T ss_dssp EEEETTTT--EEEECCCCSCTTCEEEEEEECT----TSSEEEEEEECTTSCEEEEEEEETTTCCEE-EEEEEEECSSCCC
T ss_pred EEEECCCC--ceEeeccCCCCceeEeeEEEEC----CCCEEEEEEeCCCCCeeEEEEEECCCCcee-eEEEEccCCCeEC
Confidence 33 2233 222222 24667899999999 799999888776 8999999987331 1222 22222
Q ss_pred CeEEEEEec--CCCEEEEEECCCcEEEEEeC
Q psy13856 191 VVWNVSWSL--TGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 191 ~v~~v~~~~--~g~~l~s~s~D~~v~iw~~~ 219 (271)
.+..++|+| +|+++++++.|+.++||.++
T Consensus 311 ~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~ 341 (706)
T 2z3z_A 311 PLHPLTFLPGSNNQFIWQSRRDGWNHLYLYD 341 (706)
T ss_dssp CCSCCEECTTCSSEEEEEECTTSSCEEEEEE
T ss_pred ccCCceeecCCCCEEEEEEccCCccEEEEEE
Confidence 346789999 99999999999999999887
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.47 E-value=4e-13 Score=118.59 Aligned_cols=143 Identities=7% Similarity=-0.010 Sum_probs=107.3
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCC----CcEEEEEeecCC
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH----EAAKHLGTVQSS 97 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d----~~i~~~d~~~~~ 97 (271)
....+|..++..+++++.|+.. +||+ ...+..+ . -.+++|+|||++|++++.+ ..|++||. .
T Consensus 114 ~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~--~----~~~~~~spDG~~la~~~~~~~~~~~i~~~d~---~ 183 (582)
T 3o4h_A 114 ILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARL--P----GFGFVSDIRGDLIAGLGFFGGGRVSLFTSNL---S 183 (582)
T ss_dssp EEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEE--S----SCEEEEEEETTEEEEEEEEETTEEEEEEEET---T
T ss_pred eeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecC--C----CceEEECCCCCEEEEEEEcCCCCeEEEEEcC---C
Confidence 3444554444466666665554 9998 2223222 2 2688999999999988877 77888886 2
Q ss_pred CCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCC--eEEEEEcC
Q psy13856 98 SPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDR--KVIIWTSN 175 (271)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg--~i~iwd~~ 175 (271)
++ ....+..|...+..++|+| ||++|+++..++ .|++||..
T Consensus 184 ------------------------------~g---~~~~l~~~~~~~~~~~~Sp----DG~~l~~~~~~~~~~i~~~d~~ 226 (582)
T 3o4h_A 184 ------------------------------SG---GLRVFDSGEGSFSSASISP----GMKVTAGLETAREARLVTVDPR 226 (582)
T ss_dssp ------------------------------TC---CCEEECCSSCEEEEEEECT----TSCEEEEEECSSCEEEEEECTT
T ss_pred ------------------------------CC---CceEeecCCCccccceECC----CCCEEEEccCCCeeEEEEEcCC
Confidence 22 1234567888899999999 799999888888 89999998
Q ss_pred CCceeeeeeeccCCCCeEEEE--------EecCCCEEEEEECCCcEEEEEe
Q psy13856 176 DYVTWTPFIMNTFDDVVWNVS--------WSLTGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 176 ~~~~~~~~~~~~h~~~v~~v~--------~~~~g~~l~s~s~D~~v~iw~~ 218 (271)
+++. . .+..|...+..++ |+|||.++++++.|+++++|++
T Consensus 227 ~~~~--~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 227 DGSV--E-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp TCCE--E-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred CCcE--E-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 8774 3 6677777777677 9999999999999999999998
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.8e-12 Score=114.75 Aligned_cols=178 Identities=12% Similarity=0.024 Sum_probs=121.6
Q ss_pred CCEEEEccCCCeEEeccc----e--eeeccccccc-------------cccceEEEEcCCCCeEEEEeCCCcEEEEEeec
Q psy13856 35 GHTLISCDTQAHIGIRST----I--SLLQGSVYLR-------------RESNKAGALSPKLNRSATSSFHEAAKHLGTVQ 95 (271)
Q Consensus 35 g~~l~s~s~d~~i~lwd~----~--~~~~~h~~~~-------------~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~ 95 (271)
|..+++++.|+ | +||. . ..+..|.... ...|.+++|+|| +.++.+ .++.+++||.
T Consensus 35 g~~~~~~~~~~-i-~~d~~tg~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~~~~~-~~~~i~~~d~-- 108 (706)
T 2z3z_A 35 GDNYVFIEGDD-L-VFNKANGKSAQTTRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GLVVLF-TQGGLVGFDM-- 108 (706)
T ss_dssp TTEEEEEETTE-E-EEEC-------CEEEEHHHHHTTC-----------CCCEEEEETTT-TEEEEE-ETTEEEEEET--
T ss_pred CCeEEEEeCCc-E-EEECCCCcEeeEEeechhHhhhhccchhccccccccCceeEEECCC-CeEEEE-ECCEEEEEEC--
Confidence 66777777777 8 9998 3 5555543110 023889999999 665555 4599999998
Q ss_pred CCCCceeecc----ceeeEEEeeccceee----eEEEE--eeC-----CceEEeEEecCCCcc--------------eEE
Q psy13856 96 SSSPACLQPK----YFKLTVYSTKLTRIL----ILVRI--CGG-----DKWIEETKLENHSDW--------------VRD 146 (271)
Q Consensus 96 ~~~~~~~~~~----~~~~~~~~~~~~~l~----~~v~i--~~~-----~~~~~~~~~~~h~~~--------------v~~ 146 (271)
.+++..... ......++++++.++ +.|.+ ... + +.......+... +.+
T Consensus 109 -~~~~~~~l~~~~~~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g--~~~~~~~~~~~~~~~g~~~~~ee~~~~~~ 185 (706)
T 2z3z_A 109 -LARKVTYLFDTNEETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMS--RAIAVTIDGTETLVYGQAVHQREFGIEKG 185 (706)
T ss_dssp -TTTEEEEEECCTTCCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCC--CCEESCSCCBTTEEESSCCGGGCTTCCCS
T ss_pred -CCCceEEccCCcccccCCcCCCCCCEEEEEECCeEEEEecCcccccCC--CcEEeccCCCCCeEcccchhhhhcCCCce
Confidence 555554433 224456788888877 67777 233 3 233323333332 488
Q ss_pred EEEccCCCCCCcEEEEEe---------------------------------CCCeEEEEEcCCCceeeeeeeccCCCCeE
Q psy13856 147 VAWAPSWGLSKCMIASCS---------------------------------QDRKVIIWTSNDYVTWTPFIMNTFDDVVW 193 (271)
Q Consensus 147 v~~~p~~~~~~~~l~s~~---------------------------------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~ 193 (271)
+.|+| |+++|++++ .+..|++||+.+++.........|...+.
T Consensus 186 ~~~Sp----Dg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~ 261 (706)
T 2z3z_A 186 TFWSP----KGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLT 261 (706)
T ss_dssp EEECT----TSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEE
T ss_pred EEECC----CCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEe
Confidence 99999 799999987 45789999998876421222235677899
Q ss_pred EEEEecCCCEEEEEECCC-----cEEEEEeCCCCcee
Q psy13856 194 NVSWSLTGDILTVSCGDN-----SVSLWKENTDGAWQ 225 (271)
Q Consensus 194 ~v~~~~~g~~l~s~s~D~-----~v~iw~~~~~~~~~ 225 (271)
+++|+|||+.|++++.|+ .|++||+.++....
T Consensus 262 ~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~ 298 (706)
T 2z3z_A 262 NLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVR 298 (706)
T ss_dssp EEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEE
T ss_pred eEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceee
Confidence 999999999999988775 89999998763333
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.44 E-value=4.9e-11 Score=98.78 Aligned_cols=153 Identities=9% Similarity=-0.032 Sum_probs=102.3
Q ss_pred cCCCCCCCEE-EEccCCCeEEeccc--ee-----e-e----------ccccccccccceEEEEcCCCCeEEEEe-CCCcE
Q psy13856 29 ESPLRIGHTL-ISCDTQAHIGIRST--IS-----L-L----------QGSVYLRRESNKAGALSPKLNRSATSS-FHEAA 88 (271)
Q Consensus 29 ~~~~~~g~~l-~s~s~d~~i~lwd~--~~-----~-~----------~~h~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i 88 (271)
....|||+++ +++..++.|++|++ .. . + ..+... +..++|+|+|+++++++ .++.|
T Consensus 160 ~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~~~~~~spdg~~l~v~~~~~~~v 235 (361)
T 3scy_A 160 VRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSG----PRHLIFNSDGKFAYLINEIGGTV 235 (361)
T ss_dssp EEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCC----EEEEEECTTSSEEEEEETTTCEE
T ss_pred EEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCC----CeEEEEcCCCCEEEEEcCCCCeE
Confidence 4456799855 55556899999987 11 1 1 112233 67899999999887776 68999
Q ss_pred EEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC--C
Q psy13856 89 KHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ--D 166 (271)
Q Consensus 89 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~--d 166 (271)
++|+. .++.... .........+......++|+| |+++|+++.. +
T Consensus 236 ~v~~~---~~g~~~~---------------------------~~~~~~~~~~~~~~~~i~~sp----dg~~l~v~~~~~~ 281 (361)
T 3scy_A 236 IAFRY---ADGMLDE---------------------------IQTVAADTVNAQGSGDIHLSP----DGKYLYASNRLKA 281 (361)
T ss_dssp EEEEE---ETTEEEE---------------------------EEEEESCSSCCCCEEEEEECT----TSSEEEEEECSSS
T ss_pred EEEEe---cCCceEE---------------------------eEEEecCCCCCCCcccEEECC----CCCEEEEECCCCC
Confidence 99998 2222111 011112223445568999999 7888866655 4
Q ss_pred CeEEEEEcC--CCceeeeeeeccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeCC
Q psy13856 167 RKVIIWTSN--DYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKENT 220 (271)
Q Consensus 167 g~i~iwd~~--~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~~ 220 (271)
+.|.+|++. ++.......+.. ...+..++|+|+|++|++++ .++.|.+|+++.
T Consensus 282 ~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~ 337 (361)
T 3scy_A 282 DGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQ 337 (361)
T ss_dssp CEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECT
T ss_pred CEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEEC
Confidence 899999996 333211333333 45778999999999988888 578999987763
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.43 E-value=3.8e-12 Score=114.93 Aligned_cols=174 Identities=9% Similarity=-0.025 Sum_probs=115.6
Q ss_pred ccCCCCCCCEEEEccCC---------CeEEeccc----eeee---ccccccccccceEEEEcCCCCeEEEEeCCCcEEEE
Q psy13856 28 TESPLRIGHTLISCDTQ---------AHIGIRST----ISLL---QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHL 91 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d---------~~i~lwd~----~~~~---~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~ 91 (271)
.....|||++|++++.+ +.|.+||+ ...+ .+|... +..++|||||+.|+.++. +.|++|
T Consensus 65 ~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~----~~~~~~SPdG~~la~~~~-~~i~~~ 139 (723)
T 1xfd_A 65 RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAK----LQYAGWGPKGQQLIFIFE-NNIYYC 139 (723)
T ss_dssp EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCC----CSBCCBCSSTTCEEEEET-TEEEEE
T ss_pred eEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccccc----ccccEECCCCCEEEEEEC-CeEEEE
Confidence 34456799999999775 77889998 2223 234445 788999999999999876 789999
Q ss_pred EeecCCCCceeeccce-----------------------eeEEEeeccceee--e-------------------------
Q psy13856 92 GTVQSSSPACLQPKYF-----------------------KLTVYSTKLTRIL--I------------------------- 121 (271)
Q Consensus 92 d~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~l~--~------------------------- 121 (271)
+. .++...+.... ....|+++++.++ .
T Consensus 140 ~~---~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (723)
T 1xfd_A 140 AH---VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPY 216 (723)
T ss_dssp SS---SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEE
T ss_pred EC---CCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceec
Confidence 98 44443332210 3466788888776 1
Q ss_pred ------------EEEE-e-eCCceEEeEEecCC------CcceEEEEEccCCCCCCcEEEEEeC----CCeEEEEEcCCC
Q psy13856 122 ------------LVRI-C-GGDKWIEETKLENH------SDWVRDVAWAPSWGLSKCMIASCSQ----DRKVIIWTSNDY 177 (271)
Q Consensus 122 ------------~v~i-~-~~~~~~~~~~~~~h------~~~v~~v~~~p~~~~~~~~l~s~~~----dg~i~iwd~~~~ 177 (271)
.+.+ . ..+ +....+..+ ...+.+++|+| |++++++.+. +..|++||..++
T Consensus 217 ~~~~~G~~~~~~~l~~~d~~~~--~~~~~l~~~~~~~~~~~~~~~~~~Sp----Dg~~l~~~~~~~~~~~~i~~~d~~~g 290 (723)
T 1xfd_A 217 HYPKAGSENPSISLHVIGLNGP--THDLEMMPPDDPRMREYYITMVKWAT----STKVAVTWLNRAQNVSILTLCDATTG 290 (723)
T ss_dssp ECCBTTSCCCEEEEEEEESSSS--CCCEECCCCCCGGGSSEEEEEEEESS----SSEEEEEEEETTSCEEEEEEEETTTC
T ss_pred cCCCCCCCCCeeEEEEEECCCC--ceeEEeeCCccCCCccceeEEEEEeC----CCeEEEEEEcCCCCeEEEEEEeCCCC
Confidence 3444 1 222 222344433 56789999999 7888877653 367999999887
Q ss_pred ceeeeeeec-cCCCCeE----EEEEecCCCEEEE--EECCC------cEEEEE
Q psy13856 178 VTWTPFIMN-TFDDVVW----NVSWSLTGDILTV--SCGDN------SVSLWK 217 (271)
Q Consensus 178 ~~~~~~~~~-~h~~~v~----~v~~~~~g~~l~s--~s~D~------~v~iw~ 217 (271)
+. ...+. .+...+. .++|+|||+.|+. +..|+ .|++|+
T Consensus 291 ~~--~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d 341 (723)
T 1xfd_A 291 VC--TKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSS 341 (723)
T ss_dssp CE--EEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEEC
T ss_pred cc--eEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCcceeEEEEEe
Confidence 75 33332 3334443 7899999997765 45677 466666
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.38 E-value=9.9e-12 Score=112.84 Aligned_cols=190 Identities=9% Similarity=0.079 Sum_probs=126.3
Q ss_pred ccceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccc--eEEEEcCCCCeEEEEeCC---------
Q psy13856 22 LEIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESN--KAGALSPKLNRSATSSFH--------- 85 (271)
Q Consensus 22 ~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i--~~~~~s~~~~~l~s~s~d--------- 85 (271)
+....+.....+||++++++ |+.|++||+ ...+.+|... ...+ .+++|||||++|+.++.+
T Consensus 15 ~~~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~ 91 (740)
T 4a5s_A 15 YRLKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFD-EFGHSINDYSISPDGQFILLEYNYVKQWRHSYT 91 (740)
T ss_dssp SCCCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTT-TCCSCCCEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred ccccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhh-hhcccccceEECCCCCEEEEEECCeeeEEEccc
Confidence 33455666777899999886 899999998 4455666542 1112 348899999999998876
Q ss_pred CcEEEEEeecCCCCceeecc----ceeeEEEeeccceee----eEEEE--eeCCceEEeEEecCCCcce-----------
Q psy13856 86 EAAKHLGTVQSSSPACLQPK----YFKLTVYSTKLTRIL----ILVRI--CGGDKWIEETKLENHSDWV----------- 144 (271)
Q Consensus 86 ~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~l~----~~v~i--~~~~~~~~~~~~~~h~~~v----------- 144 (271)
+.+.+||+ .++++.... ......++++++.++ +.|.+ ...+.... .+..++...+
T Consensus 92 ~~~~~~d~---~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~~~~i~~~~~~~~~~~~-lt~~g~~~~~~~g~~~~v~~e 167 (740)
T 4a5s_A 92 ASYDIYDL---NKRQLITEERIPNNTQWVTWSPVGHKLAYVWNNDIYVKIEPNLPSYR-ITWTGKEDIIYNGITDWVYEE 167 (740)
T ss_dssp EEEEEEET---TTTEECCSSCCCTTEEEEEECSSTTCEEEEETTEEEEESSTTSCCEE-CCSCCBTTTEEESBCCHHHHH
T ss_pred eEEEEEEC---CCCcEEEcccCCCcceeeEECCCCCEEEEEECCeEEEEECCCCceEE-EcCCCCccceecCcccccccc
Confidence 45569998 666655433 235677899999888 66777 23332111 1122332222
Q ss_pred ------EEEEEccCCCCCCcEEEEEeCCC------------------------------------eEEEEEcCC---Cce
Q psy13856 145 ------RDVAWAPSWGLSKCMIASCSQDR------------------------------------KVIIWTSND---YVT 179 (271)
Q Consensus 145 ------~~v~~~p~~~~~~~~l~s~~~dg------------------------------------~i~iwd~~~---~~~ 179 (271)
.++.|+| ||++|+.++.|. .|++||+.+ +..
T Consensus 168 e~~~~~~~~~wSp----Dg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~ 243 (740)
T 4a5s_A 168 EVFSAYSALWWSP----NGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTN 243 (740)
T ss_dssp HTSSSSBCEEECT----TSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSC
T ss_pred hhcCCCcceEECC----CCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCc
Confidence 3589999 799998875332 578889887 631
Q ss_pred eeeeeec------cCCCCeEEEEEecCCCEEEEEEC----CCcEEEEEeCCCC
Q psy13856 180 WTPFIMN------TFDDVVWNVSWSLTGDILTVSCG----DNSVSLWKENTDG 222 (271)
Q Consensus 180 ~~~~~~~------~h~~~v~~v~~~~~g~~l~s~s~----D~~v~iw~~~~~~ 222 (271)
.....+. +|...+..++|+|||+.++.... +..|++||+.++.
T Consensus 244 ~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 244 ATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp CCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred ceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 1122332 37778999999999996665533 3379999998763
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=2.7e-10 Score=94.65 Aligned_cols=183 Identities=6% Similarity=-0.072 Sum_probs=117.1
Q ss_pred cCCCCCCCE--EEEcc-------------CCCeEEeccc------eeeec----cccccccccceEEEEcCCCCeEEEEe
Q psy13856 29 ESPLRIGHT--LISCD-------------TQAHIGIRST------ISLLQ----GSVYLRRESNKAGALSPKLNRSATSS 83 (271)
Q Consensus 29 ~~~~~~g~~--l~s~s-------------~d~~i~lwd~------~~~~~----~h~~~~~~~i~~~~~s~~~~~l~s~s 83 (271)
....|||++ +++++ .++.+.+|++ ...+. .+... +.+++|+|||++++++.
T Consensus 88 ~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~----~~~~~~spdG~~l~~~~ 163 (365)
T 1jof_A 88 NDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTG----IHGMVFDPTETYLYSAD 163 (365)
T ss_dssp GCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCC----EEEEEECTTSSEEEEEE
T ss_pred EEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCc----ceEEEECCCCCEEEEEc
Confidence 455679984 55664 6899999987 11222 13344 78999999999888765
Q ss_pred C-CCcEEEEEeecCCCCceee--cc-------ceeeEEEeeccceee------eEEEE--ee--CCceEE----eEEec-
Q psy13856 84 F-HEAAKHLGTVQSSSPACLQ--PK-------YFKLTVYSTKLTRIL------ILVRI--CG--GDKWIE----ETKLE- 138 (271)
Q Consensus 84 ~-d~~i~~~d~~~~~~~~~~~--~~-------~~~~~~~~~~~~~l~------~~v~i--~~--~~~~~~----~~~~~- 138 (271)
. ++.|++|+... +++... .. ......++.++++++ +.+.+ .+ ++.... +..+.
T Consensus 164 ~~~~~v~~~~~~~--~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~ 241 (365)
T 1jof_A 164 LTANKLWTHRKLA--SGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP 241 (365)
T ss_dssp TTTTEEEEEEECT--TSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred CCCCEEEEEEECC--CCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence 4 67999999831 444321 11 113345677777665 56666 22 343221 11222
Q ss_pred ---CCCc------ceEEEE-EccCCCCCCcEEEEEeCC-C-----eEEEEEcC-CCceeeee-eeccCCCCeEEEEEec-
Q psy13856 139 ---NHSD------WVRDVA-WAPSWGLSKCMIASCSQD-R-----KVIIWTSN-DYVTWTPF-IMNTFDDVVWNVSWSL- 199 (271)
Q Consensus 139 ---~h~~------~v~~v~-~~p~~~~~~~~l~s~~~d-g-----~i~iwd~~-~~~~~~~~-~~~~h~~~v~~v~~~~- 199 (271)
+|.. .+..++ |+| |+++|+++..+ . .|.+|++. ++...... ....+...+..++|+|
T Consensus 242 ~~~g~~~~~~~~~~~~~i~~~sp----dG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~ 317 (365)
T 1jof_A 242 GIPDRDPETGKGLYRADVCALTF----SGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPC 317 (365)
T ss_dssp TCCCBCTTTSSBSEEEEEEEECT----TSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEEC
T ss_pred CcCCcccccccccccccEEEECC----CCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCC
Confidence 2222 588999 999 68887766543 2 89999996 44421111 2333555667889999
Q ss_pred --CCCEEEEEECC-CcEEEEEeCCC
Q psy13856 200 --TGDILTVSCGD-NSVSLWKENTD 221 (271)
Q Consensus 200 --~g~~l~s~s~D-~~v~iw~~~~~ 221 (271)
+|++|++++.+ +.|.+|+++..
T Consensus 318 ~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 318 PWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp TTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999999864 89999999764
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.1e-11 Score=99.97 Aligned_cols=152 Identities=7% Similarity=0.013 Sum_probs=104.3
Q ss_pred CCCCCCEEEEccCCCeEEeccc-----eeeecccc-ccccccceEEEEcCCCCeEE-EEeCCCcEEEEEeecCCCCceee
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST-----ISLLQGSV-YLRRESNKAGALSPKLNRSA-TSSFHEAAKHLGTVQSSSPACLQ 103 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~-~~~~~~i~~~~~s~~~~~l~-s~s~d~~i~~~d~~~~~~~~~~~ 103 (271)
..+++.++++++.++.|.+||. ...+..+. .. +..++|+|+++.++ ++..++.|.+||. .+++..
T Consensus 7 ~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~~~s~dg~~~~v~~~~~~~i~~~d~---~t~~~~- 78 (349)
T 1jmx_B 7 LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFG----PGTAMMAPDNRTAYVLNNHYGDIYGIDL---DTCKNT- 78 (349)
T ss_dssp CCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCS----SCEEEECTTSSEEEEEETTTTEEEEEET---TTTEEE-
T ss_pred ccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCC----CceeEECCCCCEEEEEeCCCCcEEEEeC---CCCcEE-
Confidence 3457889999999999999998 33444332 13 67999999998654 5557899999997 333322
Q ss_pred ccceeeEEEeeccceeeeEEEEeeCCceEEeEEec-CC-----CcceEEEEEccCCCCCCcEEEEEeCC-----------
Q psy13856 104 PKYFKLTVYSTKLTRILILVRICGGDKWIEETKLE-NH-----SDWVRDVAWAPSWGLSKCMIASCSQD----------- 166 (271)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~-~h-----~~~v~~v~~~p~~~~~~~~l~s~~~d----------- 166 (271)
..+. .+ ...+.+++|+| +++++++++.+
T Consensus 79 -------------------------------~~~~~~~~~~~~~~~~~~~~~sp----dg~~l~~~~~~~~~~~~~~~~~ 123 (349)
T 1jmx_B 79 -------------------------------FHANLSSVPGEVGRSMYSFAISP----DGKEVYATVNPTQRLNDHYVVK 123 (349)
T ss_dssp -------------------------------EEEESCCSTTEEEECSSCEEECT----TSSEEEEEEEEEEECSSCEEEC
T ss_pred -------------------------------EEEEcccccccccccccceEECC----CCCEEEEEcccccccccccccC
Confidence 1121 11 23467899999 68898888865
Q ss_pred -CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEec
Q psy13856 167 -RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 167 -g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
+.|.+||+.+++.........+...+.+++|+|+|+ +++++ +.|++||+.++ +....+.
T Consensus 124 ~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~~~~--~~i~~~d~~~~---~~~~~~~ 183 (349)
T 1jmx_B 124 PPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LYVAG--PDIYKMDVKTG---KYTVALP 183 (349)
T ss_dssp CCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EEEES--SSEEEECTTTC---CEEEEEC
T ss_pred CCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EEEcc--CcEEEEeCCCC---ceecccc
Confidence 899999998754211112223344688999999999 55554 34999998876 3444443
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-11 Score=98.72 Aligned_cols=148 Identities=10% Similarity=0.090 Sum_probs=104.1
Q ss_pred CEEEEccCCCeEEeccc-----eeeeccccc--cccccceEEEEcCCCCeE-EEEeCCCcEEEEEeecCCCCceeeccce
Q psy13856 36 HTLISCDTQAHIGIRST-----ISLLQGSVY--LRRESNKAGALSPKLNRS-ATSSFHEAAKHLGTVQSSSPACLQPKYF 107 (271)
Q Consensus 36 ~~l~s~s~d~~i~lwd~-----~~~~~~h~~--~~~~~i~~~~~s~~~~~l-~s~s~d~~i~~~d~~~~~~~~~~~~~~~ 107 (271)
+++++++.++.|.+||. +..+..... . +..++|+|+++.+ ++++.++.|.+||. .+++.....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~----~~~~~~s~dg~~l~v~~~~~~~v~~~d~---~~~~~~~~~-- 72 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPT----PMVPMVAPGGRIAYATVNKSESLVKIDL---VTGETLGRI-- 72 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTC----CCCEEECTTSSEEEEEETTTTEEEEEET---TTCCEEEEE--
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCC----ccceEEcCCCCEEEEEeCCCCeEEEEEC---CCCCeEeeE--
Confidence 47899999999999998 333332221 3 6789999999865 55566789999997 443332210
Q ss_pred eeEEEeeccceeeeEEEEeeCCceEEeEEecC---CCcceEEEEEccCCCCCCcEEEEEe------------CCCeEEEE
Q psy13856 108 KLTVYSTKLTRILILVRICGGDKWIEETKLEN---HSDWVRDVAWAPSWGLSKCMIASCS------------QDRKVIIW 172 (271)
Q Consensus 108 ~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~---h~~~v~~v~~~p~~~~~~~~l~s~~------------~dg~i~iw 172 (271)
.... |...+.+++|+| ++.++++++ .++.|.+|
T Consensus 73 ----------------------------~~~~~~~~~~~~~~~~~s~----dg~~l~~~~~~~~~~~~~~~~~~~~i~v~ 120 (337)
T 1pby_B 73 ----------------------------DLSTPEERVKSLFGAALSP----DGKTLAIYESPVRLELTHFEVQPTRVALY 120 (337)
T ss_dssp ----------------------------ECCBTTEEEECTTCEEECT----TSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred ----------------------------EcCCcccccccccceEECC----CCCEEEEEecccccccccccccCceEEEE
Confidence 0000 223567899999 688888876 57999999
Q ss_pred EcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 173 TSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 173 d~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
|..+++. ...+.. ...+.+++|+|+|++|+++ ++.|++||+.++ +....+..
T Consensus 121 d~~~~~~--~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~---~~~~~~~~ 172 (337)
T 1pby_B 121 DAETLSR--RKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAG---TLVEDKPI 172 (337)
T ss_dssp ETTTTEE--EEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTT---EEEEEECS
T ss_pred ECCCCcE--EEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCC---cEeeeeec
Confidence 9988764 333332 4467889999999988888 688999999876 45555543
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.37 E-value=2.3e-10 Score=95.44 Aligned_cols=186 Identities=13% Similarity=0.068 Sum_probs=118.8
Q ss_pred cCCCCCCCEEEEccC-CCe--EEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 29 ESPLRIGHTLISCDT-QAH--IGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 29 ~~~~~~g~~l~s~s~-d~~--i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
....|||+.|+.++. ++. |.+||. .....++... +..++|+||++.|+.++.++.+++||. .+++
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~----~~~~~~spdg~~l~~~~~~~~l~~~d~---~~g~ 113 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDN----TFGGFLSPDDDALFYVKDGRNLMRVDL---ATLE 113 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBC----SSSCEECTTSSEEEEEETTTEEEEEET---TTCC
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCC----ccceEEcCCCCEEEEEeCCCeEEEEEC---CCCc
Confidence 456789998888887 674 777776 3344455555 557889999999999999999999998 5555
Q ss_pred eeeccce-----e--eEEEeeccceee---------------------------eEEEE-e-eCCceEEeEEecCCCcce
Q psy13856 101 CLQPKYF-----K--LTVYSTKLTRIL---------------------------ILVRI-C-GGDKWIEETKLENHSDWV 144 (271)
Q Consensus 101 ~~~~~~~-----~--~~~~~~~~~~l~---------------------------~~v~i-~-~~~~~~~~~~~~~h~~~v 144 (271)
....... . ....+.+++.++ ..+.+ . .++ ....+..+...+
T Consensus 114 ~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g---~~~~l~~~~~~~ 190 (388)
T 3pe7_A 114 ENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTG---ESTVILQENQWL 190 (388)
T ss_dssp EEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTC---CEEEEEEESSCE
T ss_pred ceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCC---ceEEeecCCccc
Confidence 4432211 1 112234454443 23444 2 233 233344566778
Q ss_pred EEEEEccCCCCCCcEEEEEeCC------CeEEEEEcCCCceeeeeeeccCC--CCeEEEEEecCCCEEEEEEC-CC----
Q psy13856 145 RDVAWAPSWGLSKCMIASCSQD------RKVIIWTSNDYVTWTPFIMNTFD--DVVWNVSWSLTGDILTVSCG-DN---- 211 (271)
Q Consensus 145 ~~v~~~p~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~-D~---- 211 (271)
..+.|+|. |+..|+.++.+ ..|.++|..... ...+..+. ..+....|+|||+.|+..+. ++
T Consensus 191 ~~~~~sp~---dg~~l~~~~~~~~~~~~~~l~~~d~~~~~---~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 264 (388)
T 3pe7_A 191 GHPIYRPY---DDSTVAFCHEGPHDLVDARMWLINEDGTN---MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDR 264 (388)
T ss_dssp EEEEEETT---EEEEEEEEECSCTTTSSCSEEEEETTSCC---CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCE
T ss_pred cccEECCC---CCCEEEEEEecCCCCCcceEEEEeCCCCc---eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcc
Confidence 99999993 37777776653 378888876654 33344443 35778999999997766543 22
Q ss_pred cEEEEEeCCCCceeEEEEec
Q psy13856 212 SVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 212 ~v~iw~~~~~~~~~~~~~~~ 231 (271)
.|++||+.++ +...+..+.
T Consensus 265 ~l~~~d~~~g-~~~~l~~~~ 283 (388)
T 3pe7_A 265 FIYSADPETL-ENRQLTSMP 283 (388)
T ss_dssp EEEEECTTTC-CEEEEEEEC
T ss_pred eEEEEecCCC-ceEEEEcCC
Confidence 3999999865 333444443
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.34 E-value=3.9e-10 Score=93.67 Aligned_cols=185 Identities=9% Similarity=-0.009 Sum_probs=118.1
Q ss_pred CCCCCCEEEEccCCCeEEeccc-----eeeecccc--ccccccceEEEEcCCCCe--EEEEe-------------CCCcE
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST-----ISLLQGSV--YLRRESNKAGALSPKLNR--SATSS-------------FHEAA 88 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~--~~~~~~i~~~~~s~~~~~--l~s~s-------------~d~~i 88 (271)
..|||++|++++.+ .|.+|++ +..+..+. +. +..++|+|+|++ ++++. .++.+
T Consensus 47 ~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~----~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v 121 (365)
T 1jof_A 47 FDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGH----PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYG 121 (365)
T ss_dssp ECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSS----GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEE
T ss_pred ECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCC----CccEEECCCCCEEEEEEecCCcceeccceeecCCceE
Confidence 45799999999887 9999997 11111221 22 556899999994 45553 68999
Q ss_pred EEEEeecCCCCceeecc---------ceeeEEEeeccceee------eEEEE--ee-CCceEEeEEec--CCCcceEEEE
Q psy13856 89 KHLGTVQSSSPACLQPK---------YFKLTVYSTKLTRIL------ILVRI--CG-GDKWIEETKLE--NHSDWVRDVA 148 (271)
Q Consensus 89 ~~~d~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~------~~v~i--~~-~~~~~~~~~~~--~h~~~v~~v~ 148 (271)
++|++. ..+...... ......++.++++++ +.|.+ .. ++....+..+. .|...+..++
T Consensus 122 ~v~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~ 199 (365)
T 1jof_A 122 NVFSVS--ETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVA 199 (365)
T ss_dssp EEEEEC--TTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEE
T ss_pred EEEccC--CCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeE
Confidence 999984 234332211 123455677787665 46766 33 45434344443 2456789999
Q ss_pred EccCCCCCCcEEEEEeC-CCeEEEEEcC--CCceee----eeeec----cCCC------CeEEEE-EecCCCEEEEEECC
Q psy13856 149 WAPSWGLSKCMIASCSQ-DRKVIIWTSN--DYVTWT----PFIMN----TFDD------VVWNVS-WSLTGDILTVSCGD 210 (271)
Q Consensus 149 ~~p~~~~~~~~l~s~~~-dg~i~iwd~~--~~~~~~----~~~~~----~h~~------~v~~v~-~~~~g~~l~s~s~D 210 (271)
|+| +++++++++. ++.+.+|++. +++... ...+. +|.. .+..++ |+|+|++|+++..+
T Consensus 200 ~sp----dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~ 275 (365)
T 1jof_A 200 MHP----TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp ECT----TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred ECC----CCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCC
Confidence 999 6888877765 7899999876 333210 11121 1222 588999 99999988877643
Q ss_pred -C-----cEEEEEeCCCCceeE
Q psy13856 211 -N-----SVSLWKENTDGAWQC 226 (271)
Q Consensus 211 -~-----~v~iw~~~~~~~~~~ 226 (271)
+ .|.+|+++..+....
T Consensus 276 ~~~~~~~~i~v~~~~~~g~~~~ 297 (365)
T 1jof_A 276 NKFELQGYIAGFKLRDCGSIEK 297 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEE
T ss_pred CCCCCCCeEEEEEECCCCCEEE
Confidence 2 899999974444443
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=7.2e-12 Score=113.20 Aligned_cols=181 Identities=9% Similarity=-0.079 Sum_probs=115.8
Q ss_pred ecccCCCCCCCEEEEccC---------CCeEEeccc-eeee---ccccccccccceEEEEcCCCCeEEEEeCCCcEEEEE
Q psy13856 26 TYTESPLRIGHTLISCDT---------QAHIGIRST-ISLL---QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLG 92 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~---------d~~i~lwd~-~~~~---~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d 92 (271)
......+|||++|++++. |+.|++||+ -... ..-... +..++|||||+.|+.++ ++.|++|+
T Consensus 62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~~~----~~~~~~SPDG~~la~~~-~~~i~~~~ 136 (719)
T 1z68_A 62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELPRP----IQYLCWSPVGSKLAYVY-QNNIYLKQ 136 (719)
T ss_dssp CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCSS----BCCEEECSSTTCEEEEE-TTEEEEES
T ss_pred eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecCcc----cccceECCCCCEEEEEE-CCeEEEEe
Confidence 334445679999998876 799999998 1111 122244 78999999999999885 78999999
Q ss_pred eecCCCCceeecc--c---------------------eeeEEEeeccceee----e------------------------
Q psy13856 93 TVQSSSPACLQPK--Y---------------------FKLTVYSTKLTRIL----I------------------------ 121 (271)
Q Consensus 93 ~~~~~~~~~~~~~--~---------------------~~~~~~~~~~~~l~----~------------------------ 121 (271)
. .++.+.+.. . .....|+++++.++ .
T Consensus 137 ~---~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 213 (719)
T 1z68_A 137 R---PGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIP 213 (719)
T ss_dssp S---TTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEE
T ss_pred C---CCCCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeec
Confidence 8 444433221 1 02567888888877 1
Q ss_pred -----------EEEE-ee-CCceE---Ee---EEecCCCcceEEEEEccCCCCCCcEEEEEeCC----CeEEEEE----c
Q psy13856 122 -----------LVRI-CG-GDKWI---EE---TKLENHSDWVRDVAWAPSWGLSKCMIASCSQD----RKVIIWT----S 174 (271)
Q Consensus 122 -----------~v~i-~~-~~~~~---~~---~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d----g~i~iwd----~ 174 (271)
.+.+ .. .+... .+ ..+.+|...+.+++|+| |+.++++.... ..|.+|| .
T Consensus 214 yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sp----D~~~~~~~~~~~~~~~~l~~~d~~~~~ 289 (719)
T 1z68_A 214 YPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVT----DERVCLQWLKRVQNVSVLSICDFREDW 289 (719)
T ss_dssp CCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESS----SSEEEEEEEESSTTEEEEEEEEECSSS
T ss_pred CCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeC----CCeEEEEEeccccCeEEEEEEcccCCC
Confidence 3334 11 11100 00 11335778899999999 67777774432 3488899 6
Q ss_pred CCCceeeeeee----ccCCCCeE-----EEEEecCCCEEEE--EECCC--cEEEEEeCC
Q psy13856 175 NDYVTWTPFIM----NTFDDVVW-----NVSWSLTGDILTV--SCGDN--SVSLWKENT 220 (271)
Q Consensus 175 ~~~~~~~~~~~----~~h~~~v~-----~v~~~~~g~~l~s--~s~D~--~v~iw~~~~ 220 (271)
.+++. .... .+|...+. .+.|+|+|+.++. +..++ .|.+|++..
T Consensus 290 ~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~ 346 (719)
T 1z68_A 290 QTWDC--PKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTV 346 (719)
T ss_dssp SSEEC--CGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCS
T ss_pred CCCce--EEEEecccccCCceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCC
Confidence 66553 2333 46666666 7899999986554 44555 455666543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.29 E-value=8.3e-11 Score=106.76 Aligned_cols=177 Identities=9% Similarity=0.000 Sum_probs=115.5
Q ss_pred CCCCCEEEEccCC---------CeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 32 LRIGHTLISCDTQ---------AHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 32 ~~~g~~l~s~s~d---------~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
+|||+.|+.++.+ +.+.+||+ ...+..|... +...+|||||+.||.+ .|+.|++|+. .+
T Consensus 70 Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~----~~~~~~SPdG~~la~~-~~~~i~~~~~---~~ 141 (740)
T 4a5s_A 70 SPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNN----TQWVTWSPVGHKLAYV-WNNDIYVKIE---PN 141 (740)
T ss_dssp CTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTT----EEEEEECSSTTCEEEE-ETTEEEEESS---TT
T ss_pred CCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCc----ceeeEECCCCCEEEEE-ECCeEEEEEC---CC
Confidence 6799999999887 45569998 4556667777 8999999999999888 5689999998 44
Q ss_pred Cceeecc--ce---------------------eeEEEeeccceee-e---------------------------------
Q psy13856 99 PACLQPK--YF---------------------KLTVYSTKLTRIL-I--------------------------------- 121 (271)
Q Consensus 99 ~~~~~~~--~~---------------------~~~~~~~~~~~l~-~--------------------------------- 121 (271)
+...+.. .. ....|+++++.++ .
T Consensus 142 ~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~ 221 (740)
T 4a5s_A 142 LPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKA 221 (740)
T ss_dssp SCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBT
T ss_pred CceEEEcCCCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCC
Confidence 4333221 10 1256788888776 1
Q ss_pred -------EEEE--eeC---CceEEeEEec------CCCcceEEEEEccCCCCCCcEEEEEeC----CCeEEEEEcCCCc-
Q psy13856 122 -------LVRI--CGG---DKWIEETKLE------NHSDWVRDVAWAPSWGLSKCMIASCSQ----DRKVIIWTSNDYV- 178 (271)
Q Consensus 122 -------~v~i--~~~---~~~~~~~~~~------~h~~~v~~v~~~p~~~~~~~~l~s~~~----dg~i~iwd~~~~~- 178 (271)
.+.+ ..+ +.......+. +|...+..++|+| |+++++.... +..|++||..+++
T Consensus 222 G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp----dg~~~~~~~~r~~~~~~i~~~d~~tg~~ 297 (740)
T 4a5s_A 222 GAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT----QERISLQWLRRIQNYSVMDICDYDESSG 297 (740)
T ss_dssp TSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE----TTEEEEEEEESSTTEEEEEEEEEETTTT
T ss_pred cCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC----CCeEEEEEeCCCCCEEEEEEEECCCCcc
Confidence 1222 111 1000111222 3677899999999 6886665432 3479999998876
Q ss_pred ---eeeeeee--ccCCCCeE-----EEEEecCCCEEE-EEEC-CC--cEEEEEeCC
Q psy13856 179 ---TWTPFIM--NTFDDVVW-----NVSWSLTGDILT-VSCG-DN--SVSLWKENT 220 (271)
Q Consensus 179 ---~~~~~~~--~~h~~~v~-----~v~~~~~g~~l~-s~s~-D~--~v~iw~~~~ 220 (271)
+.....+ .+|...|. ...|+|||+.++ ..+. +| .|++|+...
T Consensus 298 ~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~ 353 (740)
T 4a5s_A 298 RWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK 353 (740)
T ss_dssp EEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred ccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence 3112222 45665554 788999999877 6654 44 577777653
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.25 E-value=4.7e-09 Score=83.86 Aligned_cols=170 Identities=9% Similarity=0.071 Sum_probs=113.4
Q ss_pred CCCCEEEEccC-CCeEEeccc----eeeec-cccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-
Q psy13856 33 RIGHTLISCDT-QAHIGIRST----ISLLQ-GSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK- 105 (271)
Q Consensus 33 ~~g~~l~s~s~-d~~i~lwd~----~~~~~-~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~- 105 (271)
+++.++++... ++.|.+||. +..+. .+... +.+++++|+++.+++...++.|++|+. . +......
T Consensus 87 ~~g~l~v~~~~~~~~i~~~d~~g~~~~~~~~~~~~~----~~~i~~~~~g~l~v~~~~~~~i~~~~~---~-g~~~~~~~ 158 (286)
T 1q7f_A 87 NSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQH----PRGVTVDNKGRIIVVECKVMRVIIFDQ---N-GNVLHKFG 158 (286)
T ss_dssp TTTEEEEEECGGGCEEEEECTTSCEEEEECTTTCSC----EEEEEECTTSCEEEEETTTTEEEEECT---T-SCEEEEEE
T ss_pred CCCeEEEEcCCCCCEEEEECCCCcEEEEecCccCCC----ceEEEEeCCCCEEEEECCCCEEEEEcC---C-CCEEEEeC
Confidence 46777776643 799999997 33332 22334 789999999998888778899999984 2 3333222
Q ss_pred -----cee-eEEEeeccceee-----eEEEE-eeCCceEEeEEecCC--CcceEEEEEccCCCCCCcEEEEEeCCC-eEE
Q psy13856 106 -----YFK-LTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENH--SDWVRDVAWAPSWGLSKCMIASCSQDR-KVI 170 (271)
Q Consensus 106 -----~~~-~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h--~~~v~~v~~~p~~~~~~~~l~s~~~dg-~i~ 170 (271)
..+ ...+..+++.++ +.|.+ ...+ ..+..+..+ ...+.+++++| ++.++++...++ .|.
T Consensus 159 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~g~~~~p~~i~~d~----~G~l~v~~~~~~~~i~ 232 (286)
T 1q7f_A 159 CSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINS----NGEILIADNHNNFNLT 232 (286)
T ss_dssp CTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTC--CEEEEESCTTTSCSEEEEEECT----TCCEEEEECSSSCEEE
T ss_pred CCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCC--CEEEEEccCCccCCCcEEEECC----CCCEEEEeCCCCEEEE
Confidence 112 233344455544 45666 4444 344455433 36788999999 688888888776 999
Q ss_pred EEEcCCCceeeeeeeccC--CCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 171 IWTSNDYVTWTPFIMNTF--DDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 171 iwd~~~~~~~~~~~~~~h--~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
+||.. ++. ...+..+ ...+.+++++|+|+++++ +.|+.|++|++..
T Consensus 233 ~~~~~-g~~--~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~ 280 (286)
T 1q7f_A 233 IFTQD-GQL--ISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQ 280 (286)
T ss_dssp EECTT-SCE--EEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSC
T ss_pred EECCC-CCE--EEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEccc
Confidence 99964 333 3333333 234789999999987776 6799999999764
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.20 E-value=4.7e-10 Score=100.33 Aligned_cols=149 Identities=9% Similarity=0.030 Sum_probs=98.1
Q ss_pred CCCCCE-EEEccC-CCeEEeccce-------eeecc-----ccccccccceEEEEcCCCCeEEEEeCC----------Cc
Q psy13856 32 LRIGHT-LISCDT-QAHIGIRSTI-------SLLQG-----SVYLRRESNKAGALSPKLNRSATSSFH----------EA 87 (271)
Q Consensus 32 ~~~g~~-l~s~s~-d~~i~lwd~~-------~~~~~-----h~~~~~~~i~~~~~s~~~~~l~s~s~d----------~~ 87 (271)
+|||+. |+..+. +..|.+++.- ..+.. |... +.+++|+|||+.|+.++.+ ..
T Consensus 87 SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~----~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~ 162 (662)
T 3azo_A 87 RPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLR----WADPVLLPERGEVWCMAEEFTGEGPSDVRRF 162 (662)
T ss_dssp CSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEE----EEEEEEETTTTEEEEEEEEECSSSTTCEEEE
T ss_pred ecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCcc----ccCcEECCCCCEEEEEEecccCCCCCCceeE
Confidence 478987 665543 5566666532 12333 4455 7899999999999998876 46
Q ss_pred EEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEec-CCCcceEEEEEccCCCCCCcEEEEEeCC
Q psy13856 88 AKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLE-NHSDWVRDVAWAPSWGLSKCMIASCSQD 166 (271)
Q Consensus 88 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~~l~s~~~d 166 (271)
|++|+. .....- ..+. ...+. .+...+..++|+| ||++|+.++.+
T Consensus 163 i~~~~~---~~~~~~------------------------~~~~---~~~l~~~~~~~~~~~~~Sp----DG~~la~~~~~ 208 (662)
T 3azo_A 163 LAAVPL---DGSAAA------------------------DRSA---VRELSDDAHRFVTGPRLSP----DGRQAVWLAWD 208 (662)
T ss_dssp EEEEET---TSTTTT------------------------CGGG---SEESSCSCSSEECCCEECT----TSSEEEEEEEC
T ss_pred EEEEEC---CCCccc------------------------cCCc---eeEEEecCCCcccCceECC----CCCEEEEEECC
Confidence 777776 210000 0011 12233 4556778899999 79999887755
Q ss_pred --------CeEEEEEcC-CCc--eeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 167 --------RKVIIWTSN-DYV--TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 167 --------g~i~iwd~~-~~~--~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
..|++||+. ++. .. .....+|...+..+.|+|||+++++++.|+..+||.++
T Consensus 209 ~~~~~~~~~~i~~~d~~~~g~~~~~-~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~ 271 (662)
T 3azo_A 209 HPRMPWEGTELKTARVTEDGRFADT-RTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVD 271 (662)
T ss_dssp TTCCTTTCEEEEEEEECTTSCEEEE-EEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEEC
T ss_pred CCCCCCCCcEEEEEEECCCCccccc-EEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEE
Confidence 379999998 452 21 33444567889999999999988888888844444443
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-08 Score=83.06 Aligned_cols=172 Identities=8% Similarity=-0.023 Sum_probs=117.7
Q ss_pred CCCCCEEEEccCCCeEEeccc------eeee---------ccccccccccceEEEEcC-CCCeEEEEe-CCCcEEEEEee
Q psy13856 32 LRIGHTLISCDTQAHIGIRST------ISLL---------QGSVYLRRESNKAGALSP-KLNRSATSS-FHEAAKHLGTV 94 (271)
Q Consensus 32 ~~~g~~l~s~s~d~~i~lwd~------~~~~---------~~h~~~~~~~i~~~~~s~-~~~~l~s~s-~d~~i~~~d~~ 94 (271)
.++|+++++...++.|++|+. +..+ .++-.. +.+++|+| +++.+++.+ .++.|++|+.
T Consensus 99 d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~----P~~ia~~~~~g~lyv~d~~~~~~I~~~~~- 173 (329)
T 3fvz_A 99 DTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQ----PTDVAVEPSTGAVFVSDGYCNSRIVQFSP- 173 (329)
T ss_dssp CTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSS----EEEEEECTTTCCEEEEECSSCCEEEEECT-
T ss_pred CCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCC----CcEEEEeCCCCeEEEEeCCCCCeEEEEcC-
Confidence 468999999999999999997 2222 122223 78999999 788888886 6899999983
Q ss_pred cCCCCceeeccc--------------eee-EEEeec-cceee-----eEEEE-eeC-CceEEeEEe--cCCCcceEEEEE
Q psy13856 95 QSSSPACLQPKY--------------FKL-TVYSTK-LTRIL-----ILVRI-CGG-DKWIEETKL--ENHSDWVRDVAW 149 (271)
Q Consensus 95 ~~~~~~~~~~~~--------------~~~-~~~~~~-~~~l~-----~~v~i-~~~-~~~~~~~~~--~~h~~~v~~v~~ 149 (271)
.+..+.... .+. ..+..+ +..++ +.|++ ... + +.+..+ ..+...+.++++
T Consensus 174 ---~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G--~~~~~~~~~~~~~~~~~~~~ 248 (329)
T 3fvz_A 174 ---SGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK--EFVREIKHASFGRNVFAISY 248 (329)
T ss_dssp ---TSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC--CEEEEECCTTTTTCEEEEEE
T ss_pred ---CCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC--cEEEEEeccccCCCcceeee
Confidence 333333221 122 233344 44444 56666 333 5 455555 346677889999
Q ss_pred ccCCCCCCcEEEEE-------eCCCeEEEEEcCCCceeeeeee---ccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 150 APSWGLSKCMIASC-------SQDRKVIIWTSNDYVTWTPFIM---NTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 150 ~p~~~~~~~~l~s~-------~~dg~i~iwd~~~~~~~~~~~~---~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
+| +..+++. ..+..+++|+..+++. ...+ .++...+..++++|+|.++++...++.|++|++.
T Consensus 249 ~p-----g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~--~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~ 321 (329)
T 3fvz_A 249 IP-----GFLFAVNGKPYFGDQEPVQGFVMNFSSGEI--IDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLT 321 (329)
T ss_dssp ET-----TEEEEEECCCCTTCSCCCCEEEEETTTCCE--EEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEE
T ss_pred cC-----CEEEEeCCCEEeccCCCcEEEEEEcCCCeE--EEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCC
Confidence 98 2333333 3455899999988875 4444 3566779999999999888888889999999986
Q ss_pred C
Q psy13856 220 T 220 (271)
Q Consensus 220 ~ 220 (271)
.
T Consensus 322 ~ 322 (329)
T 3fvz_A 322 E 322 (329)
T ss_dssp E
T ss_pred c
Confidence 4
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.16 E-value=1.6e-08 Score=81.26 Aligned_cols=171 Identities=11% Similarity=-0.068 Sum_probs=116.0
Q ss_pred CCCC-EEEEccCCCeEEeccc---eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccc--
Q psy13856 33 RIGH-TLISCDTQAHIGIRST---ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKY-- 106 (271)
Q Consensus 33 ~~g~-~l~s~s~d~~i~lwd~---~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~-- 106 (271)
++|+ +++++..++.|..|+. ...+..+... +.+++++|+|+++++...++.|.+|+. .+++......
T Consensus 37 ~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~----~~~l~~~~dg~l~v~~~~~~~i~~~d~---~~g~~~~~~~~~ 109 (296)
T 3e5z_A 37 PARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHH----QNGHCLNKQGHLIACSHGLRRLERQRE---PGGEWESIADSF 109 (296)
T ss_dssp GGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSS----EEEEEECTTCCEEEEETTTTEEEEECS---TTCCEEEEECEE
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCC----cceeeECCCCcEEEEecCCCeEEEEcC---CCCcEEEEeecc
Confidence 5887 7888888999999998 4455556666 889999999998877777789999997 4554432210
Q ss_pred -------eeeEEEeeccceee-----e-----------------EEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCC
Q psy13856 107 -------FKLTVYSTKLTRIL-----I-----------------LVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLS 156 (271)
Q Consensus 107 -------~~~~~~~~~~~~l~-----~-----------------~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 156 (271)
.....+..+++.++ + .+.. ...+. ...+..+......++|+| +
T Consensus 110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~---~~~~~~~~~~~~gi~~s~----d 182 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGT---LSAPIRDRVKPNGLAFLP----S 182 (296)
T ss_dssp TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSC---EEEEECCCSSEEEEEECT----T
T ss_pred CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCC---EEEeecCCCCCccEEECC----C
Confidence 11233444455444 1 2222 22232 233344566778999999 6
Q ss_pred CcEEEEEeCCCeEEEEEcC-CCce-eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 157 KCMIASCSQDRKVIIWTSN-DYVT-WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~-~~~~-~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
+..+++.+.++.|.+|++. ++.. .....+..+...+..++++++|+++++. ++.|.+|+.+
T Consensus 183 g~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 183 GNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp SCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred CCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 8888888888999999997 3332 1112233345567789999999977666 7889999976
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-08 Score=81.88 Aligned_cols=168 Identities=10% Similarity=-0.050 Sum_probs=112.9
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeecccc-ccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccce
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSV-YLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF 107 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~-~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~ 107 (271)
.+++|++++.|+.|.+||. +..+..+. .. +.+++++|+|+.++ +.++.|+.||. +++.+.....
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~----~~~~~~~pdG~ilv--s~~~~V~~~d~----~G~~~W~~~~ 73 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWE----CNSVAATKAGEILF--SYSKGAKMITR----DGRELWNIAA 73 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCC----CCEEEECTTSCEEE--ECBSEEEEECT----TSCEEEEEEC
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCC----CcCeEECCCCCEEE--eCCCCEEEECC----CCCEEEEEcC
Confidence 3678999999999999998 44455444 34 78999999999888 34667777774 3444433321
Q ss_pred ------eeEEEeeccceee---e---EEEE-eeCCceEEeEEec------CCCcceEEEEEccCCCCCCcEEEEEeCCCe
Q psy13856 108 ------KLTVYSTKLTRIL---I---LVRI-CGGDKWIEETKLE------NHSDWVRDVAWAPSWGLSKCMIASCSQDRK 168 (271)
Q Consensus 108 ------~~~~~~~~~~~l~---~---~v~i-~~~~~~~~~~~~~------~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~ 168 (271)
.......+++.++ + .+.. ..++ +.+..+. .+......++..+ ++.++++...++.
T Consensus 74 ~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~G--k~l~~~~~~~~~~~~~~~~~~v~~~~----~G~~lv~~~~~~~ 147 (276)
T 3no2_A 74 PAGCEMQTARILPDGNALVAWCGHPSTILEVNMKG--EVLSKTEFETGIERPHAQFRQINKNK----KGNYLVPLFATSE 147 (276)
T ss_dssp CTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTS--CEEEEEEECCSCSSGGGSCSCCEECT----TSCEEEEETTTTE
T ss_pred CCCccccccEECCCCCEEEEecCCCCEEEEEeCCC--CEEEEEeccCCCCcccccccCceECC----CCCEEEEecCCCE
Confidence 1122334455555 2 2222 3455 3333332 2223455667777 6999999999999
Q ss_pred EEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 169 VIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 169 i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
|..||.. ++. ...+... ....++.+.++|.++++++.++.|..+|..++
T Consensus 148 v~~~d~~-G~~--~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG 196 (276)
T 3no2_A 148 VREIAPN-GQL--LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN 196 (276)
T ss_dssp EEEECTT-SCE--EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC
T ss_pred EEEECCC-CCE--EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC
Confidence 9999988 664 3344433 45667888899999999998889999998876
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.14 E-value=1.3e-09 Score=97.44 Aligned_cols=149 Identities=11% Similarity=0.040 Sum_probs=101.8
Q ss_pred ccCCCCCCCEEEEccCC----------CeEEeccc-e---------eeec-cccccccccceEEEEcCCCCeEEEEeCCC
Q psy13856 28 TESPLRIGHTLISCDTQ----------AHIGIRST-I---------SLLQ-GSVYLRRESNKAGALSPKLNRSATSSFHE 86 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d----------~~i~lwd~-~---------~~~~-~h~~~~~~~i~~~~~s~~~~~l~s~s~d~ 86 (271)
.....|||+.|++++.| ..|.+||+ - ..+. .+... +..++|||||++|+.++.++
T Consensus 134 ~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~SpDG~~la~~~~~~ 209 (662)
T 3azo_A 134 DPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRF----VTGPRLSPDGRQAVWLAWDH 209 (662)
T ss_dssp EEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSE----ECCCEECTTSSEEEEEEECT
T ss_pred CcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCc----ccCceECCCCCEEEEEECCC
Confidence 33445799999999877 58889987 2 2233 44445 77899999999999887553
Q ss_pred --------cEEEEEeecCC-CCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCC
Q psy13856 87 --------AAKHLGTVQSS-SPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSK 157 (271)
Q Consensus 87 --------~i~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~ 157 (271)
.|++|++ . ++... .......+|...+..+.|+| |+
T Consensus 210 ~~~~~~~~~i~~~d~---~~~g~~~-----------------------------~~~~l~~~~~~~~~~~~~sp----dg 253 (662)
T 3azo_A 210 PRMPWEGTELKTARV---TEDGRFA-----------------------------DTRTLLGGPEEAIAQAEWAP----DG 253 (662)
T ss_dssp TCCTTTCEEEEEEEE---CTTSCEE-----------------------------EEEEEEEETTBCEEEEEECT----TS
T ss_pred CCCCCCCcEEEEEEE---CCCCccc-----------------------------ccEEeCCCCCceEcceEECC----CC
Confidence 6778887 2 12100 11222234567889999999 68
Q ss_pred cEEEEEeCCC--eEEEEEcCCCceeeeeeeccCCCC--------eEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 158 CMIASCSQDR--KVIIWTSNDYVTWTPFIMNTFDDV--------VWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 158 ~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~h~~~--------v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
++++++..++ .|.+||..+++. ......+... +..++|+|++.++++++. +.++||.++
T Consensus 254 ~l~~~~~~~~~~~l~~~~~~~~~~--~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d 322 (662)
T 3azo_A 254 SLIVATDRTGWWNLHRVDPATGAA--TQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILD 322 (662)
T ss_dssp CEEEEECTTSSCEEEEECTTTCCE--EESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEE
T ss_pred eEEEEECCCCCeEEEEEECCCCce--eecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEE
Confidence 8888888888 566666655543 2222323222 567899999999999998 999999654
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.4e-08 Score=79.69 Aligned_cols=171 Identities=11% Similarity=0.048 Sum_probs=114.7
Q ss_pred CCCCCEEEEccCCCeEEeccc----eeeec------cccccccccceEEEE-cCCCCeEEEEeC-CCcEEEEEeecCCCC
Q psy13856 32 LRIGHTLISCDTQAHIGIRST----ISLLQ------GSVYLRRESNKAGAL-SPKLNRSATSSF-HEAAKHLGTVQSSSP 99 (271)
Q Consensus 32 ~~~g~~l~s~s~d~~i~lwd~----~~~~~------~h~~~~~~~i~~~~~-s~~~~~l~s~s~-d~~i~~~d~~~~~~~ 99 (271)
.++|.++++...++.|.+||. +..+. ++... +.++++ .++++.+++... ++.|++|+. ++
T Consensus 38 ~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~----p~~i~~~~~~g~l~v~~~~~~~~i~~~d~----~g 109 (286)
T 1q7f_A 38 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLY----PNRVAVVRNSGDIIVTERSPTHQIQIYNQ----YG 109 (286)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSS----EEEEEEETTTTEEEEEECGGGCEEEEECT----TS
T ss_pred CCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccC----ceEEEEEcCCCeEEEEcCCCCCEEEEECC----CC
Confidence 468898998888899999997 23332 12234 789999 467766666543 889989983 23
Q ss_pred ceeecc-----cee-eEEEeeccceee-----eEEEE-eeCCceEEeEEec--CCCcceEEEEEccCCCCCCcEEEEEeC
Q psy13856 100 ACLQPK-----YFK-LTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLE--NHSDWVRDVAWAPSWGLSKCMIASCSQ 165 (271)
Q Consensus 100 ~~~~~~-----~~~-~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~~~~~~l~s~~~ 165 (271)
..+... ..+ ...+..+++.++ +.|.+ ...+ .....+. ++...+.+++++| ++.++++...
T Consensus 110 ~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g--~~~~~~~~~~~~~~p~~i~~~~----~g~l~v~~~~ 183 (286)
T 1q7f_A 110 QFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG--NVLHKFGCSKHLEFPNGVVVND----KQEIFISDNR 183 (286)
T ss_dssp CEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS--CEEEEEECTTTCSSEEEEEECS----SSEEEEEEGG
T ss_pred cEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC--CEEEEeCCCCccCCcEEEEECC----CCCEEEEECC
Confidence 333322 122 233344565554 45555 4344 3334442 4456789999999 6888888888
Q ss_pred CCeEEEEEcCCCceeeeeeecc--CCCCeEEEEEecCCCEEEEEECCC-cEEEEEeC
Q psy13856 166 DRKVIIWTSNDYVTWTPFIMNT--FDDVVWNVSWSLTGDILTVSCGDN-SVSLWKEN 219 (271)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~-~v~iw~~~ 219 (271)
++.|++||... .. ...+.. +...+..++++++|.++++...++ .|.+|+.+
T Consensus 184 ~~~i~~~~~~g-~~--~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 184 AHCVKVFNYEG-QY--LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp GTEEEEEETTC-CE--EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred CCEEEEEcCCC-CE--EEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 99999999754 32 333432 336789999999999888888776 99999954
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.7e-09 Score=88.04 Aligned_cols=181 Identities=8% Similarity=-0.018 Sum_probs=110.0
Q ss_pred ccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEE--EEcCCCCeEEEE------------------
Q psy13856 28 TESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAG--ALSPKLNRSATS------------------ 82 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~--~~s~~~~~l~s~------------------ 82 (271)
.....|||+.|+.++.++.|.+||+ ...+..+... +... .++|+++.++..
T Consensus 85 ~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~----~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~ 160 (388)
T 3pe7_A 85 GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEW----VGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHE 160 (388)
T ss_dssp SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE----EEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHH
T ss_pred ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhc----ccccceeECCCCCeeccccccCcccccccccchhhh
Confidence 3455689999999999999999998 2334444444 4333 358999988743
Q ss_pred ----eCCCcEEEEEeecCCCCceeecc----ceeeEEEee-ccceee----e-------EEEE-eeCCceEEeEEecCCC
Q psy13856 83 ----SFHEAAKHLGTVQSSSPACLQPK----YFKLTVYST-KLTRIL----I-------LVRI-CGGDKWIEETKLENHS 141 (271)
Q Consensus 83 ----s~d~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~-~~~~l~----~-------~v~i-~~~~~~~~~~~~~~h~ 141 (271)
..+..|.+||+ .+++..... ......+++ +++.++ + .+.+ ...+ .....+..+.
T Consensus 161 ~~~~~~~~~l~~~d~---~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~~~~ 235 (388)
T 3pe7_A 161 FYFTKPCCRLMRVDL---KTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDG--TNMRKVKTHA 235 (388)
T ss_dssp HGGGCCCEEEEEEET---TTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTS--CCCEESCCCC
T ss_pred hhccCCcceEEEEEC---CCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCC--CceEEeeeCC
Confidence 24467888887 555443332 234556777 777765 1 3333 2222 2233444444
Q ss_pred --cceEEEEEccCCCCCCcEEEEEeC-C----CeEEEEEcCCCceeeeeeeccCCCC---eEEEEEecCCCEEEEE----
Q psy13856 142 --DWVRDVAWAPSWGLSKCMIASCSQ-D----RKVIIWTSNDYVTWTPFIMNTFDDV---VWNVSWSLTGDILTVS---- 207 (271)
Q Consensus 142 --~~v~~v~~~p~~~~~~~~l~s~~~-d----g~i~iwd~~~~~~~~~~~~~~h~~~---v~~v~~~~~g~~l~s~---- 207 (271)
..+....|+| |++.|+..+. + ..|++||+.+++...+..+.++... ...+.|+|+|+.|+..
T Consensus 236 ~~~~~~~~~~sp----dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 311 (388)
T 3pe7_A 236 EGESCTHEFWVP----DGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD 311 (388)
T ss_dssp TTEEEEEEEECT----TSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred CCcccccceECC----CCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence 3578899999 6886655443 2 2499999998774222233321100 1123699999887754
Q ss_pred -----ECCCcEEEEEeCCC
Q psy13856 208 -----CGDNSVSLWKENTD 221 (271)
Q Consensus 208 -----s~D~~v~iw~~~~~ 221 (271)
..+..|++||+.++
T Consensus 312 ~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 312 SGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp -----CCCCEEEEEETTTT
T ss_pred cccccCCCCEEEEEeccCC
Confidence 44668999998864
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-08 Score=83.43 Aligned_cols=186 Identities=9% Similarity=-0.024 Sum_probs=118.5
Q ss_pred cCCCCCCCEEEEccCC------------------------CeEEeccc-----eeeec-cccccccccceEEEEcCCCCe
Q psy13856 29 ESPLRIGHTLISCDTQ------------------------AHIGIRST-----ISLLQ-GSVYLRRESNKAGALSPKLNR 78 (271)
Q Consensus 29 ~~~~~~g~~l~s~s~d------------------------~~i~lwd~-----~~~~~-~h~~~~~~~i~~~~~s~~~~~ 78 (271)
....++|+++++.+.+ +.|.+||. +..+. ++-.. +.+++++|+|++
T Consensus 29 va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~----p~gia~d~~g~l 104 (329)
T 3fvz_A 29 VALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYL----PHGLSIDTDGNY 104 (329)
T ss_dssp EEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSS----EEEEEECTTSCE
T ss_pred EEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCC----ceEEEECCCCCE
Confidence 3344689988888877 47899987 22221 22234 789999999998
Q ss_pred EEEEeCCCcEEEEEeecCCCCc-eeecc-------------ceee-EEEee-ccceee------eEEEE-eeCCceEEeE
Q psy13856 79 SATSSFHEAAKHLGTVQSSSPA-CLQPK-------------YFKL-TVYST-KLTRIL------ILVRI-CGGDKWIEET 135 (271)
Q Consensus 79 l~s~s~d~~i~~~d~~~~~~~~-~~~~~-------------~~~~-~~~~~-~~~~l~------~~v~i-~~~~~~~~~~ 135 (271)
+++...++.|+.|+. .... .+... ..+. ..+.. .+..++ +.|.+ ..++ ..+.
T Consensus 105 ~v~d~~~~~v~~~~~---~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~g--~~~~ 179 (329)
T 3fvz_A 105 WVTDVALHQVFKLDP---HSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPSG--KFVT 179 (329)
T ss_dssp EEEETTTTEEEEECT---TCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTTS--CEEE
T ss_pred EEEECCCCEEEEEeC---CCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCCC--CEEE
Confidence 888888999999996 2211 22111 1232 33333 344444 34544 4444 3444
Q ss_pred EecC----------CCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeee--ccCCCCeEEEEEec----
Q psy13856 136 KLEN----------HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIM--NTFDDVVWNVSWSL---- 199 (271)
Q Consensus 136 ~~~~----------h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~h~~~v~~v~~~~---- 199 (271)
.+.. +-.....|+++|. .+.++++...++.|++|+..+++. ...+ ..+...+..++|+|
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~---~g~l~v~d~~~~~I~~~~~~~G~~--~~~~~~~~~~~~~~~~~~~pg~~~ 254 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPH---LDQLCVADRENGRIQCFKTDTKEF--VREIKHASFGRNVFAISYIPGFLF 254 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETT---TTEEEEEETTTTEEEEEETTTCCE--EEEECCTTTTTCEEEEEEETTEEE
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECC---CCEEEEEECCCCEEEEEECCCCcE--EEEEeccccCCCcceeeecCCEEE
Confidence 4421 2234789999993 378888888999999999987765 3333 45667889999999
Q ss_pred --CCCEEEEEECCCcEEEEEeCCCCceeEEEEec
Q psy13856 200 --TGDILTVSCGDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 200 --~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
+|...++...+..|++|++.++ +.+..+.
T Consensus 255 ~~~g~~~v~~~~~~~v~~~~~~~g---~~~~~~~ 285 (329)
T 3fvz_A 255 AVNGKPYFGDQEPVQGFVMNFSSG---EIIDVFK 285 (329)
T ss_dssp EEECCCCTTCSCCCCEEEEETTTC---CEEEEEC
T ss_pred EeCCCEEeccCCCcEEEEEEcCCC---eEEEEEc
Confidence 3333333334558999998877 4444543
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.10 E-value=1.2e-08 Score=84.74 Aligned_cols=74 Identities=5% Similarity=0.056 Sum_probs=55.7
Q ss_pred EEEccCCCCCCcEEEEEeC-----------CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEE
Q psy13856 147 VAWAPSWGLSKCMIASCSQ-----------DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSL 215 (271)
Q Consensus 147 v~~~p~~~~~~~~l~s~~~-----------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~i 215 (271)
++++| ++..+..+.. .+.|.+||..+.+. ...+..+. +..++|+|+|++|++++. ++|.+
T Consensus 259 ~a~~~----dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~--v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v 329 (361)
T 2oiz_A 259 VGLHR----ASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQR--VARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNV 329 (361)
T ss_dssp EEEET----TTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEE--EEEEECTT--CCEEEEETTTTEEEEECS-SCEEE
T ss_pred EEEec----CCCeEEEEEccCCCcccccCCCceEEEEECCCCcE--EEEEecCC--eeEEEECCCCCEEEEeCC-CeEEE
Confidence 67888 5555554432 35899999998875 56666665 899999999999998887 99999
Q ss_pred EEeCCCCceeEEEEe
Q psy13856 216 WKENTDGAWQCITEM 230 (271)
Q Consensus 216 w~~~~~~~~~~~~~~ 230 (271)
||..++ ..+.+.++
T Consensus 330 ~D~~t~-~l~~~~~i 343 (361)
T 2oiz_A 330 YDISQP-EPKLLRTI 343 (361)
T ss_dssp EECSSS-SCEEEEEE
T ss_pred EECCCC-cceeeEEe
Confidence 998753 33566665
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.09 E-value=4.1e-09 Score=87.76 Aligned_cols=135 Identities=9% Similarity=-0.068 Sum_probs=96.5
Q ss_pred CCCCEEEEccCCCeEEeccc--eee--------ecc-ccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 33 RIGHTLISCDTQAHIGIRST--ISL--------LQG-SVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~--~~~--------~~~-h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
+...++++|+.| .+++|++ +.. +.. ....... |+.++| |++.|+++ .++.|++||.. +..
T Consensus 47 ~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~---sl~- 117 (388)
T 1xip_A 47 NSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLE---ELS- 117 (388)
T ss_dssp TTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESS---STT-
T ss_pred CCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEch---hhh-
Confidence 467788888886 5666987 220 111 1111112 889999 88999998 88999999983 211
Q ss_pred eeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceee
Q psy13856 102 LQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWT 181 (271)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 181 (271)
.......|...+.++.+.+. . ++++..||.+.+||+.++..
T Consensus 118 -------------------------------~~~~~~~~~~~v~~i~~~~p-----~-~av~~~dG~L~v~dl~~~~~-- 158 (388)
T 1xip_A 118 -------------------------------EFRTVTSFEKPVFQLKNVNN-----T-LVILNSVNDLSALDLRTKST-- 158 (388)
T ss_dssp -------------------------------CEEEEEECSSCEEEEEECSS-----E-EEEEETTSEEEEEETTTCCE--
T ss_pred -------------------------------ccCccceeecceeeEEecCC-----C-EEEEECCCCEEEEEccCCcc--
Confidence 11122345566778877762 2 88899999999999997664
Q ss_pred eeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 182 PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 182 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.. +...|.|++|+|+| ++.|..||++++|+++..
T Consensus 159 ~~----~~~~Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~ 192 (388)
T 1xip_A 159 KQ----LAQNVTSFDVTNSQ--LAVLLKDRSFQSFAWRNG 192 (388)
T ss_dssp EE----EEESEEEEEECSSE--EEEEETTSCEEEEEEETT
T ss_pred cc----ccCCceEEEEcCCc--eEEEEcCCcEEEEcCCCc
Confidence 22 45689999999999 778999999999998765
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.09 E-value=4.2e-09 Score=94.92 Aligned_cols=156 Identities=5% Similarity=-0.127 Sum_probs=101.8
Q ss_pred ecccCCCCCCCEEE-----EccCCCeEEeccc--eeee-ccccccccccceEEEEcCCCCeEEEEeCCCc----------
Q psy13856 26 TYTESPLRIGHTLI-----SCDTQAHIGIRST--ISLL-QGSVYLRRESNKAGALSPKLNRSATSSFHEA---------- 87 (271)
Q Consensus 26 ~~~~~~~~~g~~l~-----s~s~d~~i~lwd~--~~~~-~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~---------- 87 (271)
......+|||++|| .|+.+..|++||+ -..+ ..+... .....++|+|||+.|+.++.|..
T Consensus 123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~ 200 (695)
T 2bkl_A 123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEG--GKYATPKWTPDSKGFYYEWLPTDPSIKVDERPG 200 (695)
T ss_dssp EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSC--CTTCCCEECTTSSEEEEEECCCCTTSCGGGGGG
T ss_pred EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCc--ccccceEEecCCCEEEEEEecCCCCCccccCCC
Confidence 34445568999999 7777889999999 2222 223222 00268899999999999988776
Q ss_pred ---EEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe
Q psy13856 88 ---AKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 164 (271)
Q Consensus 88 ---i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~ 164 (271)
|++|++ .++... . ..+.....|...+.++.|+| ||++|+..+
T Consensus 201 ~~~v~~~~l---~t~~~~--------------------------~--~lv~~~~~~~~~~~~~~~Sp----DG~~l~~~~ 245 (695)
T 2bkl_A 201 YTTIRYHTL---GTEPSK--------------------------D--TVVHERTGDPTTFLQSDLSR----DGKYLFVYI 245 (695)
T ss_dssp GCEEEEEET---TSCGGG--------------------------C--EEEECCCCCTTCEEEEEECT----TSCCEEEEE
T ss_pred CCEEEEEEC---CCCchh--------------------------c--eEEEecCCCCEEEEEEEECC----CCCEEEEEE
Confidence 888876 222210 0 23333345667888999999 788888777
Q ss_pred CCC----eEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEE---CCCcEEEEEeCCCC
Q psy13856 165 QDR----KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC---GDNSVSLWKENTDG 222 (271)
Q Consensus 165 ~dg----~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s---~D~~v~iw~~~~~~ 222 (271)
.++ .|.+|+...+. ...+..+...+....| ++|.+++.+. .++.|.+|+++++.
T Consensus 246 ~~~~~~~~l~~~~~~~~~---~~~l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~ 306 (695)
T 2bkl_A 246 LRGWSENDVYWKRPGEKD---FRLLVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPA 306 (695)
T ss_dssp EETTTEEEEEEECTTCSS---CEEEEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred eCCCCceEEEEEcCCCCc---eEEeecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence 665 66677654444 3444455556666666 5666444444 25789999987653
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1.2e-07 Score=83.08 Aligned_cols=179 Identities=8% Similarity=0.020 Sum_probs=123.1
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc--
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-- 105 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-- 105 (271)
+.+.++++...++.|.++|. +..+... .. +..++|+|||+++++++.|+.|.+||+.. .+.+.+...
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~----p~~v~~SpDGr~lyv~~~dg~V~viD~~~-~t~~~v~~i~~ 238 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YA----VHISRLSASGRYLFVIGRDGKVNMIDLWM-KEPTTVAEIKI 238 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SC----EEEEEECTTSCEEEEEETTSEEEEEETTS-SSCCEEEEEEC
T ss_pred CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CC----ccceEECCCCCEEEEEcCCCeEEEEECCC-CCCcEeEEEec
Confidence 35567888899999999998 3334322 23 56899999999999999999999999820 144454443
Q ss_pred -cee-eEEEe----eccceee------eEEEEeeCCceEEeEEecC----------CCc-ceEEEEEccCCCCCCcEEEE
Q psy13856 106 -YFK-LTVYS----TKLTRIL------ILVRICGGDKWIEETKLEN----------HSD-WVRDVAWAPSWGLSKCMIAS 162 (271)
Q Consensus 106 -~~~-~~~~~----~~~~~l~------~~v~i~~~~~~~~~~~~~~----------h~~-~v~~v~~~p~~~~~~~~l~s 162 (271)
..+ ...++ ++++++. +.+.+.+....+.+..+.. |.. .+..+..++. ...++++
T Consensus 239 G~~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~---~~~~vv~ 315 (567)
T 1qks_A 239 GSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHY---RPEFIVN 315 (567)
T ss_dssp CSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSS---SSEEEEE
T ss_pred CCCCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCC---CCEEEEE
Confidence 222 33455 4777766 6666633333355554432 222 5778888885 4567777
Q ss_pred EeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeCCC
Q psy13856 163 CSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKENTD 221 (271)
Q Consensus 163 ~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~~~ 221 (271)
...+|.|.++|...........+ ........+.|+|+|++++++. .+++|.++|..++
T Consensus 316 ~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~ 374 (567)
T 1qks_A 316 VKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 374 (567)
T ss_dssp ETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred ecCCCeEEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCC
Confidence 77789999999987654322222 2344677899999999987766 5789999999876
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.07 E-value=5.9e-09 Score=86.87 Aligned_cols=180 Identities=7% Similarity=-0.017 Sum_probs=108.2
Q ss_pred cccCCCCCCCEEEEccCC---CeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC
Q psy13856 27 YTESPLRIGHTLISCDTQ---AHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d---~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
......|||+.|+....+ ..|.+||. ...+..+... ....+.|+|||+.|+.++.++.+++|+. ..+
T Consensus 39 ~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~---~~~~~~~spdg~~l~~~~~~~~l~~~d~---~~~ 112 (396)
T 3c5m_A 39 YQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGD---NTFGGFISTDERAFFYVKNELNLMKVDL---ETL 112 (396)
T ss_dssp TSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCB---CTTTCEECTTSSEEEEEETTTEEEEEET---TTC
T ss_pred ecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCC---ccccceECCCCCEEEEEEcCCcEEEEEC---CCC
Confidence 344556899987766432 46777787 2233333222 0334789999999999999999999997 444
Q ss_pred ceeeccce-----ee--E-----------------EEeeccceee----------eEEEE--eeCCceEEeEEecCCCcc
Q psy13856 100 ACLQPKYF-----KL--T-----------------VYSTKLTRIL----------ILVRI--CGGDKWIEETKLENHSDW 143 (271)
Q Consensus 100 ~~~~~~~~-----~~--~-----------------~~~~~~~~l~----------~~v~i--~~~~~~~~~~~~~~h~~~ 143 (271)
+....... +. . .++++++.++ ..+.+ ...+. . ..+..+...
T Consensus 113 ~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~--~-~~~~~~~~~ 189 (396)
T 3c5m_A 113 EEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGE--L-EVIHQDTAW 189 (396)
T ss_dssp CEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCC--E-EEEEEESSC
T ss_pred CcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCc--E-EeeccCCcc
Confidence 43322210 11 0 1122222221 34444 22332 2 222346677
Q ss_pred eEEEEEccCCCCCCcEEEEEeCC------CeEEEEEcCCCceeeeeeeccC--CCCeEEEEEecCCCEEEEEECC-----
Q psy13856 144 VRDVAWAPSWGLSKCMIASCSQD------RKVIIWTSNDYVTWTPFIMNTF--DDVVWNVSWSLTGDILTVSCGD----- 210 (271)
Q Consensus 144 v~~v~~~p~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~h--~~~v~~v~~~~~g~~l~s~s~D----- 210 (271)
+..+.|+|. ++..|+..+.+ ..|.+||...... ..+..+ ...+..++|+|+|+.|+.++.+
T Consensus 190 ~~~~~~sp~---dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~---~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (396)
T 3c5m_A 190 LGHPIYRPF---DDSTVGFCHEGPHDLVDARMWLVNEDGSNV---RKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTD 263 (396)
T ss_dssp EEEEEEETT---EEEEEEEEECSCSSSCSCCCEEEETTSCCC---EESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCC
T ss_pred cccceECCC---CCCEEEEEecCCCCCCCceEEEEECCCCce---eEeeccCCCccccceEECCCCCEEEEEecCCCCcc
Confidence 889999994 36666665543 4688888876542 223323 2357889999999987777654
Q ss_pred CcEEEEEeCCC
Q psy13856 211 NSVSLWKENTD 221 (271)
Q Consensus 211 ~~v~iw~~~~~ 221 (271)
+.|++||+.++
T Consensus 264 ~~l~~~d~~~g 274 (396)
T 3c5m_A 264 RVIYKANPETL 274 (396)
T ss_dssp EEEEEECTTTC
T ss_pred ceEEEEECCCC
Confidence 44999998754
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-08 Score=91.23 Aligned_cols=154 Identities=5% Similarity=-0.109 Sum_probs=100.9
Q ss_pred ccCCCCCCCEEEEccCCC-----eEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCc-----------
Q psy13856 28 TESPLRIGHTLISCDTQA-----HIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEA----------- 87 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d~-----~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~----------- 87 (271)
....+|||++||.++.++ .|++||+ .......... +.+++|+|||+.|+.++.++.
T Consensus 129 ~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~----~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~ 204 (710)
T 2xdw_A 129 GYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVK----FSCMAWTHDGKGMFYNAYPQQDGKSDGTETST 204 (710)
T ss_dssp EEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEEC----SCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred EEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcc----cceEEEEeCCCEEEEEEECCcccccccccccc
Confidence 344567999988765543 8999998 1111111222 568999999999999887765
Q ss_pred -----EEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEE
Q psy13856 88 -----AKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIAS 162 (271)
Q Consensus 88 -----i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s 162 (271)
|++|++ .++.... ..+.....|...+..+.|+| |+++|+.
T Consensus 205 ~~~~~v~~~~l---~t~~~~~----------------------------~~v~~~~~~~~~~~~~~~Sp----Dg~~l~~ 249 (710)
T 2xdw_A 205 NLHQKLYYHVL---GTDQSED----------------------------ILCAEFPDEPKWMGGAELSD----DGRYVLL 249 (710)
T ss_dssp CCCCEEEEEET---TSCGGGC----------------------------EEEECCTTCTTCEEEEEECT----TSCEEEE
T ss_pred CCCCEEEEEEC---CCCcccc----------------------------eEEeccCCCCeEEEEEEEcC----CCCEEEE
Confidence 667776 2222100 12222233556688999999 7888887
Q ss_pred EeC-----CCeEEEEEcCC------CceeeeeeeccCCCCeEEEEEecCCCEEEEEECC----CcEEEEEeCCCC
Q psy13856 163 CSQ-----DRKVIIWTSND------YVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD----NSVSLWKENTDG 222 (271)
Q Consensus 163 ~~~-----dg~i~iwd~~~------~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D----~~v~iw~~~~~~ 222 (271)
.+. +..|++||+.+ +.. ....+..+...+.. .|+|+|..|+..+.+ +.|.+|++.+..
T Consensus 250 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~ 322 (710)
T 2xdw_A 250 SIREGCDPVNRLWYCDLQQESNGITGIL-KWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE 322 (710)
T ss_dssp EEECSSSSCCEEEEEEGGGSSSSSCSSC-CCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred EEEccCCCccEEEEEECcccccccCCcc-ceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence 765 67899999976 421 14445556555554 488999887776653 369999987653
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.02 E-value=7.3e-08 Score=76.03 Aligned_cols=174 Identities=7% Similarity=-0.069 Sum_probs=112.7
Q ss_pred CCCCEEEEccCCCeEEeccc----eeeec-cccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc--
Q psy13856 33 RIGHTLISCDTQAHIGIRST----ISLLQ-GSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-- 105 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~----~~~~~-~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-- 105 (271)
++|.++++.. ++.|.+||. ...+. ..... +.+++++++++.+++...++.|.+|+. .+.......
T Consensus 76 ~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~----p~~i~~~~~g~l~v~~~~~~~i~~~~~---~~~~~~~~~~~ 147 (270)
T 1rwi_B 76 GAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNY----PEGLAVDTQGAVYVADRGNNRVVKLAA---GSKTQTVLPFT 147 (270)
T ss_dssp TTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSS----EEEEEECTTCCEEEEEGGGTEEEEECT---TCCSCEECCCC
T ss_pred CCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCC----CcceEECCCCCEEEEECCCCEEEEEEC---CCceeEeeccc
Confidence 5788777766 789999997 22222 12234 789999999998777777888988865 332222111
Q ss_pred --ce-eeEEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCC
Q psy13856 106 --YF-KLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 106 --~~-~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~ 176 (271)
.. ....+..+++.++ +.|.+ ...+. ........+...+.++++++ ++.++++...++.|.+|+...
T Consensus 148 ~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~-~~~~~~~~~~~~p~~i~~d~----~g~l~v~~~~~~~v~~~~~~~ 222 (270)
T 1rwi_B 148 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN-NQVVLPFTDITAPWGIAVDE----AGTVYVTEHNTNQVVKLLAGS 222 (270)
T ss_dssp SCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC-CEEECCCSSCCSEEEEEECT----TCCEEEEETTTSCEEEECTTC
T ss_pred cCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC-ceEeecccCCCCceEEEECC----CCCEEEEECCCCcEEEEcCCC
Confidence 11 2233344455444 34554 22221 12222223336688999999 578888887889999999876
Q ss_pred CceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 177 YVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 177 ~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
... ......+...+.+++++++|+++++...++.|+++++...
T Consensus 223 ~~~--~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~ 265 (270)
T 1rwi_B 223 TTS--TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEH 265 (270)
T ss_dssp SCC--EECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGG
T ss_pred Ccc--eeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCc
Confidence 442 2222233357899999999998888888999999998754
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.5e-09 Score=86.61 Aligned_cols=173 Identities=7% Similarity=-0.010 Sum_probs=105.3
Q ss_pred CCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceE-------------------EEEcCCCCeEEEE----
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKA-------------------GALSPKLNRSATS---- 82 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~-------------------~~~s~~~~~l~s~---- 82 (271)
..|||+.|+.++.++.|.+||. ......+... ... ++|+|+++.++.+
T Consensus 88 ~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~----~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~ 163 (396)
T 3c5m_A 88 ISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEW----KGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH 163 (396)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTE----EEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred ECCCCCEEEEEEcCCcEEEEECCCCCcEEEEeccccc----CCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence 4679999999999899999998 2222323332 222 3567888766544
Q ss_pred -eCCCcEEEEEeecCCCCceeecc----ceeeEEEee-ccceee-----------eEEEE-eeCCceEEeEEecCC--Cc
Q psy13856 83 -SFHEAAKHLGTVQSSSPACLQPK----YFKLTVYST-KLTRIL-----------ILVRI-CGGDKWIEETKLENH--SD 142 (271)
Q Consensus 83 -s~d~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~-~~~~l~-----------~~v~i-~~~~~~~~~~~~~~h--~~ 142 (271)
..+..|++||. .+++..... ......++. +++.++ ..+.+ ...+ .....+..+ ..
T Consensus 164 ~~~~~~l~~~d~---~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~--~~~~~l~~~~~~~ 238 (396)
T 3c5m_A 164 TNPTCRLIKVDI---ETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDG--SNVRKIKEHAEGE 238 (396)
T ss_dssp TCCCEEEEEEET---TTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTS--CCCEESSCCCTTE
T ss_pred CCCcceEEEEEC---CCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCC--CceeEeeccCCCc
Confidence 35667888887 555443322 123445555 455444 02333 2222 122233333 23
Q ss_pred ceEEEEEccCCCCCCcEEEEEeCC-----CeEEEEEcCCCceeeeeeeccCCCCeEEEEEec-CCCEEEEEE--------
Q psy13856 143 WVRDVAWAPSWGLSKCMIASCSQD-----RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSL-TGDILTVSC-------- 208 (271)
Q Consensus 143 ~v~~v~~~p~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s-------- 208 (271)
.+..+.|+| ++.+|+.++.+ +.|++||+.++... .+..... .. +.|+| +|+++++++
T Consensus 239 ~~~~~~~sp----dg~~l~~~~~~~~~~~~~l~~~d~~~g~~~---~l~~~~~-~~-~~~s~~dg~~l~~~~~~~p~~~~ 309 (396)
T 3c5m_A 239 SCTHEFWIP----DGSAMAYVSYFKGQTDRVIYKANPETLENE---EVMVMPP-CS-HLMSNFDGSLMVGDGCDAPVDVA 309 (396)
T ss_dssp EEEEEEECT----TSSCEEEEEEETTTCCEEEEEECTTTCCEE---EEEECCS-EE-EEEECSSSSEEEEEECCC-----
T ss_pred cccceEECC----CCCEEEEEecCCCCccceEEEEECCCCCeE---EeeeCCC-CC-CCccCCCCceEEEecCCcceeec
Confidence 578899999 68877766544 55999999887642 2221222 23 89999 999888765
Q ss_pred --------CCCcEEEEEeCCC
Q psy13856 209 --------GDNSVSLWKENTD 221 (271)
Q Consensus 209 --------~D~~v~iw~~~~~ 221 (271)
.+..|++||+.++
T Consensus 310 ~~~~~~~~~~~~i~~~d~~~~ 330 (396)
T 3c5m_A 310 DADSYNIENDPFLYVLNTKAK 330 (396)
T ss_dssp -----CCCCCCEEEEEETTTT
T ss_pred cccccccCCCCcEEEEecccC
Confidence 3478999998754
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.98 E-value=5.1e-08 Score=79.52 Aligned_cols=145 Identities=9% Similarity=-0.101 Sum_probs=97.1
Q ss_pred CCCCEEEEccCCCeEEeccc----eeee-ccccccccccceEEEEcCCCCeEEEEeCC----CcEEEEEeecCCCCceee
Q psy13856 33 RIGHTLISCDTQAHIGIRST----ISLL-QGSVYLRRESNKAGALSPKLNRSATSSFH----EAAKHLGTVQSSSPACLQ 103 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~----~~~~-~~h~~~~~~~i~~~~~s~~~~~l~s~s~d----~~i~~~d~~~~~~~~~~~ 103 (271)
++|++++++..++.|.+||. ...+ ..+... +.+++++|+++++++...+ +.|.+|+. ..+..
T Consensus 54 ~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~----~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~---~~~~~-- 124 (333)
T 2dg1_A 54 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKAN----PAAIKIHKDGRLFVCYLGDFKSTGGIFAATE---NGDNL-- 124 (333)
T ss_dssp TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSS----EEEEEECTTSCEEEEECTTSSSCCEEEEECT---TSCSC--
T ss_pred CCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCC----cceEEECCCCcEEEEeCCCCCCCceEEEEeC---CCCEE--
Confidence 68898888888899999998 2222 244555 8999999999887777666 67888886 22211
Q ss_pred ccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC------CCeEEEEEcCCC
Q psy13856 104 PKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ------DRKVIIWTSNDY 177 (271)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~------dg~i~iwd~~~~ 177 (271)
.....-..+...+.++.++| ++.++++... .+.|..+|...+
T Consensus 125 ----------------------------~~~~~~~~~~~~~~~i~~d~----~g~l~v~~~~~~~~~~~~~l~~~~~~~~ 172 (333)
T 2dg1_A 125 ----------------------------QDIIEDLSTAYCIDDMVFDS----KGGFYFTDFRGYSTNPLGGVYYVSPDFR 172 (333)
T ss_dssp ----------------------------EEEECSSSSCCCEEEEEECT----TSCEEEEECCCBTTBCCEEEEEECTTSC
T ss_pred ----------------------------EEEEccCccCCcccceEECC----CCCEEEEeccccccCCCceEEEEeCCCC
Confidence 10000012345788999999 5887777654 355666665544
Q ss_pred ceeeeeeeccCCCCeEEEEEecCCCEEEEE-ECCCcEEEEEeCCC
Q psy13856 178 VTWTPFIMNTFDDVVWNVSWSLTGDILTVS-CGDNSVSLWKENTD 221 (271)
Q Consensus 178 ~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~-s~D~~v~iw~~~~~ 221 (271)
.. ..+......+..++|+|+|+.|+.+ +.++.|.+|+++..
T Consensus 173 ~~---~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~ 214 (333)
T 2dg1_A 173 TV---TPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDD 214 (333)
T ss_dssp CE---EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred EE---EEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCC
Confidence 42 2222233457889999999866544 45789999999643
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=1.8e-07 Score=84.53 Aligned_cols=184 Identities=9% Similarity=-0.163 Sum_probs=114.7
Q ss_pred cCCCCCCCEEEEccCCCe----------------EEeccc---e----eeecc--ccccccccceEEEEcCCCCeEEEEe
Q psy13856 29 ESPLRIGHTLISCDTQAH----------------IGIRST---I----SLLQG--SVYLRRESNKAGALSPKLNRSATSS 83 (271)
Q Consensus 29 ~~~~~~g~~l~s~s~d~~----------------i~lwd~---~----~~~~~--h~~~~~~~i~~~~~s~~~~~l~s~s 83 (271)
....|||+.|+.++.|+. |.+|++ . ..+.. |... +..++|+|||++|+..+
T Consensus 176 ~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~----~~~~~~SpDg~~l~~~~ 251 (710)
T 2xdw_A 176 MAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKW----MGGAELSDDGRYVLLSI 251 (710)
T ss_dssp EEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTC----EEEEEECTTSCEEEEEE
T ss_pred EEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeE----EEEEEEcCCCCEEEEEE
Confidence 445679999998887766 999988 1 11122 3444 67899999999888776
Q ss_pred C-----CCcEEEEEeec------CC-CCceeecc-ceeeEEEeeccceee---------eEEEE-e-eCCceEEeEEecC
Q psy13856 84 F-----HEAAKHLGTVQ------SS-SPACLQPK-YFKLTVYSTKLTRIL---------ILVRI-C-GGDKWIEETKLEN 139 (271)
Q Consensus 84 ~-----d~~i~~~d~~~------~~-~~~~~~~~-~~~~~~~~~~~~~l~---------~~v~i-~-~~~~~~~~~~~~~ 139 (271)
. +..+++||... +. ....+... ......++.+++.++ ..+.+ . ..+.....+.+..
T Consensus 252 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~ 331 (710)
T 2xdw_A 252 REGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVP 331 (710)
T ss_dssp ECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEEC
T ss_pred EccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccC
Confidence 4 56888999842 11 11111111 112234556666554 23444 2 2221001233444
Q ss_pred CCc--ceEEEEEccCCCCCCcEEEEEeCCCe--EEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEE-EC---CC
Q psy13856 140 HSD--WVRDVAWAPSWGLSKCMIASCSQDRK--VIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVS-CG---DN 211 (271)
Q Consensus 140 h~~--~v~~v~~~p~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~-s~---D~ 211 (271)
|.. .+..+.|++ ++.++++...|+. |.+|++.++.. ...+..+.+.+..++++|++..++.. +. .+
T Consensus 332 ~~~~~~~~~~~~~~----~~~lv~~~~~~g~~~l~~~~~~~g~~--~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~ 405 (710)
T 2xdw_A 332 EHEKDVLEWVACVR----SNFLVLCYLHDVKNTLQLHDLATGAL--LKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPG 405 (710)
T ss_dssp CCSSCEEEEEEEET----TTEEEEEEEETTEEEEEEEETTTCCE--EEEECCCSSEEEEEECCTTCSEEEEEEECSSCCC
T ss_pred CCCCCeEEEEEEEc----CCEEEEEEEECCEEEEEEEECCCCCE--EEecCCCCceEEEEecCCCCCEEEEEEeCCCCCC
Confidence 543 688899987 5788888888885 55667655554 45566667788899999998765533 32 46
Q ss_pred cEEEEEeCCCC
Q psy13856 212 SVSLWKENTDG 222 (271)
Q Consensus 212 ~v~iw~~~~~~ 222 (271)
+|+.||+.++.
T Consensus 406 ~i~~~d~~tg~ 416 (710)
T 2xdw_A 406 IIYHCDLTKEE 416 (710)
T ss_dssp EEEEEETTSSS
T ss_pred EEEEEECCCCc
Confidence 89999987653
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.92 E-value=1.2e-07 Score=77.69 Aligned_cols=166 Identities=12% Similarity=0.036 Sum_probs=101.4
Q ss_pred cCCCCCCCEEEEccCC---Ce--EEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCC--------------
Q psy13856 29 ESPLRIGHTLISCDTQ---AH--IGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH-------------- 85 (271)
Q Consensus 29 ~~~~~~g~~l~s~s~d---~~--i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d-------------- 85 (271)
....|||+.|+.++.+ +. |.+|++ ...+..+. . +..++|+|||+.|+.++.+
T Consensus 64 ~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~----~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~ 138 (347)
T 2gop_A 64 PRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N----IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVP 138 (347)
T ss_dssp EEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E----EEEEEECTTSSEEEEEEECCCC---------CC
T ss_pred eEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C----ccceeECCCCCEEEEEEccCCCcCCcEEEcccc
Confidence 3455799998887754 33 666666 22222221 1 6789999999988887643
Q ss_pred -------------CcEEEEEeecCCCCceeecc---ceeeEEEeeccceee-e-----------EEEE--eeCCceEEeE
Q psy13856 86 -------------EAAKHLGTVQSSSPACLQPK---YFKLTVYSTKLTRIL-I-----------LVRI--CGGDKWIEET 135 (271)
Q Consensus 86 -------------~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~l~-~-----------~v~i--~~~~~~~~~~ 135 (271)
..|++|+. .+++.+... ......++.++ .++ . ...+ .+.+. ..
T Consensus 139 ~~~~g~~~~~~~~~~l~~~d~---~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~---~~ 211 (347)
T 2gop_A 139 AWFDDLGFFDGEKTTFWIFDT---ESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK---EE 211 (347)
T ss_dssp CC---------CEEEEEEEET---TTTEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE---EE
T ss_pred eeecCcccccCccceEEEEEC---CCCeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCCc---eE
Confidence 46778887 555441211 22334455555 332 1 1233 22332 22
Q ss_pred EecCCCcceEEEEEccCCCCCCcEEEEEeCC--------CeEEEEEcCCCceeeeeeeccCCCCeEE-EEEecCCCEEEE
Q psy13856 136 KLENHSDWVRDVAWAPSWGLSKCMIASCSQD--------RKVIIWTSNDYVTWTPFIMNTFDDVVWN-VSWSLTGDILTV 206 (271)
Q Consensus 136 ~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~h~~~v~~-v~~~~~g~~l~s 206 (271)
.+..+ ..+..+ +| +|++|+.++.+ ..|.+|| +++. ......|...+.. +.|+ ++ ++++
T Consensus 212 ~l~~~-~~~~~~--sp----dg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~--~~l~~~~~~~~~~~~~~s-dg-~~~~ 278 (347)
T 2gop_A 212 KMFEK-VSFYAV--DS----DGERILLYGKPEKKYMSEHNKLYIYD--GKEV--MGILDEVDRGVGQAKIKD-GK-VYFT 278 (347)
T ss_dssp EEEEE-ESEEEE--EE----CSSCEEEEECCSSSCCCSSCEEEEEC--SSCE--EESSTTCCSEEEEEEEET-TE-EEEE
T ss_pred EeccC-cceeeE--CC----CCCEEEEEEccccCCccccceEEEEC--CCce--EeccccCCcccCCccEEc-Cc-EEEE
Confidence 33333 444444 88 68888777754 3678888 4442 3444566777886 8999 88 9999
Q ss_pred EECCCcEEEEEeCC
Q psy13856 207 SCGDNSVSLWKENT 220 (271)
Q Consensus 207 ~s~D~~v~iw~~~~ 220 (271)
++.++.++|| +++
T Consensus 279 ~~~~~~~~l~-~~~ 291 (347)
T 2gop_A 279 LFEEGSVNLY-IWD 291 (347)
T ss_dssp EEETTEEEEE-EES
T ss_pred EecCCcEEEE-EcC
Confidence 9999999999 883
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-07 Score=73.52 Aligned_cols=176 Identities=11% Similarity=0.008 Sum_probs=109.8
Q ss_pred CCCCCEEE-EccCCCeEEeccc----eeee-ccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc
Q psy13856 32 LRIGHTLI-SCDTQAHIGIRST----ISLL-QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 32 ~~~g~~l~-s~s~d~~i~lwd~----~~~~-~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
.++|.+++ +...++.|..|+. ...+ ..+... +.+++++++++.+++.. ++.|..|+. .........
T Consensus 32 ~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----p~~i~~~~~g~l~v~~~-~~~i~~~d~---~~~~~~~~~ 103 (270)
T 1rwi_B 32 DSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQ----PQGLAVDGAGTVYVTDF-NNRVVTLAA---GSNNQTVLP 103 (270)
T ss_dssp CTTCCEEEEECSSSCEEEEECC-----EECCCCSCCS----CCCEEECTTCCEEEEET-TTEEEEECT---TCSCCEECC
T ss_pred CCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCC----cceeEECCCCCEEEEcC-CCEEEEEeC---CCceEeeee
Confidence 46888777 6577899999987 1111 122234 78999999998666655 888989986 332222111
Q ss_pred ----cee-eEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcC
Q psy13856 106 ----YFK-LTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSN 175 (271)
Q Consensus 106 ----~~~-~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~ 175 (271)
..+ ...+..+++.++ +.|.+...+..............+.+++++| ++.++++...++.|.+||..
T Consensus 104 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~----~g~l~v~~~~~~~i~~~~~~ 179 (270)
T 1rwi_B 104 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDN----SGNVYVTDTDNNRVVKLEAE 179 (270)
T ss_dssp CCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECT----TCCEEEEEGGGTEEEEECTT
T ss_pred cCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeC----CCCEEEEECCCCEEEEEecC
Confidence 112 222333455444 3444422221111111122334678899999 57888887778899999987
Q ss_pred CCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 176 DYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 176 ~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.... ......+...+..++++++|.++++...++.|.+|+....
T Consensus 180 ~~~~--~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 180 SNNQ--VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp TCCE--EECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred CCce--EeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 7553 2222233367889999999987777777889999997643
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.4e-07 Score=75.88 Aligned_cols=167 Identities=10% Similarity=-0.083 Sum_probs=107.2
Q ss_pred cCCCCCCCEEEEccCC---------------------------CeEEeccc----e-eeeccccccccccceEEEEcCCC
Q psy13856 29 ESPLRIGHTLISCDTQ---------------------------AHIGIRST----I-SLLQGSVYLRRESNKAGALSPKL 76 (271)
Q Consensus 29 ~~~~~~g~~l~s~s~d---------------------------~~i~lwd~----~-~~~~~h~~~~~~~i~~~~~s~~~ 76 (271)
....|||+.|+.++.+ ..|.+||+ . ..+.. . . +..++|+|+|
T Consensus 109 ~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~----~~~~~~spdg 182 (347)
T 2gop_A 109 LEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-R----FSSGIWHRDK 182 (347)
T ss_dssp EEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E-T----TCEEEEETTE
T ss_pred eeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C-C----cccccCCCCe
Confidence 3445799988887642 56888887 2 44444 3 5 8899999999
Q ss_pred CeEEEEeCCC-------cEEEEEeecCCCCceeeccc-eeeEEEeeccceee--e-----------EEEEeeCCceEEeE
Q psy13856 77 NRSATSSFHE-------AAKHLGTVQSSSPACLQPKY-FKLTVYSTKLTRIL--I-----------LVRICGGDKWIEET 135 (271)
Q Consensus 77 ~~l~s~s~d~-------~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~l~--~-----------~v~i~~~~~~~~~~ 135 (271)
.++++..+. ...+|... +++...... ......+++++.++ . .+.+.+.+ +...
T Consensus 183 -~~~~~~~~~~~~~~~~~~~l~~~d---~~~~~~l~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~--~~~~ 256 (347)
T 2gop_A 183 -IVVNVPHREIIPQYFKFWDIYIWE---DGKEEKMFEKVSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYDGK--EVMG 256 (347)
T ss_dssp -EEEEEECCCSSCCSSCCEEEEEEE---TTEEEEEEEEESEEEEEECSSCEEEEECCSSSCCCSSCEEEEECSS--CEEE
T ss_pred -EEEEEecccccccccccccEEEeC---CCceEEeccCcceeeECCCCCEEEEEEccccCCccccceEEEECCC--ceEe
Confidence 877776652 45666652 232222111 21122266777665 1 33332234 3333
Q ss_pred EecCCCcceEE-EEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcE-
Q psy13856 136 KLENHSDWVRD-VAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSV- 213 (271)
Q Consensus 136 ~~~~h~~~v~~-v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v- 213 (271)
...+|...+.. +.|+ . + ++++++.++.+++| +.++. ...+..+...|.+++|+| .++++++.++..
T Consensus 257 l~~~~~~~~~~~~~~s-d----g-~~~~~~~~~~~~l~-~~~g~---~~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~ 324 (347)
T 2gop_A 257 ILDEVDRGVGQAKIKD-G----K-VYFTLFEEGSVNLY-IWDGE---IKPIAKGRHWIMGFDVDE--IVVYLKETATRLR 324 (347)
T ss_dssp SSTTCCSEEEEEEEET-T----E-EEEEEEETTEEEEE-EESSS---EEEEECSSSEEEEEEESS--SEEEEEECSSSCC
T ss_pred ccccCCcccCCccEEc-C----c-EEEEEecCCcEEEE-EcCCc---eEEEecCCCeEEeeeeeC--cEEEEEcCCCChH
Confidence 34556677886 8898 5 5 88899999999999 87544 333444577899999999 677777777665
Q ss_pred EEEEeC
Q psy13856 214 SLWKEN 219 (271)
Q Consensus 214 ~iw~~~ 219 (271)
.||.++
T Consensus 325 ~l~~~~ 330 (347)
T 2gop_A 325 ELFTWD 330 (347)
T ss_dssp EEEEES
T ss_pred HheEeC
Confidence 788876
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=98.87 E-value=1e-06 Score=70.15 Aligned_cols=177 Identities=10% Similarity=0.021 Sum_probs=112.9
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc----eeeecccc-ccccccceEEEEcCCCCeEEEEeC-CCcEEEEEeecCCCCc
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST----ISLLQGSV-YLRRESNKAGALSPKLNRSATSSF-HEAAKHLGTVQSSSPA 100 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~-~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~~~d~~~~~~~~ 100 (271)
......|+|+++++ .++.|..||. +..+..+. .. +.++.+.++|+.+++.+. ++.+..++ .+++
T Consensus 40 ~~~~~~pdG~ilvs--~~~~V~~~d~~G~~~W~~~~~~~~~----~~~~~~~~dG~~lv~~~~~~~~v~~vd----~~Gk 109 (276)
T 3no2_A 40 NSVAATKAGEILFS--YSKGAKMITRDGRELWNIAAPAGCE----MQTARILPDGNALVAWCGHPSTILEVN----MKGE 109 (276)
T ss_dssp CEEEECTTSCEEEE--CBSEEEEECTTSCEEEEEECCTTCE----EEEEEECTTSCEEEEEESTTEEEEEEC----TTSC
T ss_pred cCeEECCCCCEEEe--CCCCEEEECCCCCEEEEEcCCCCcc----ccccEECCCCCEEEEecCCCCEEEEEe----CCCC
Confidence 33345579998884 4678999987 44444432 34 788999999999999877 66665555 3444
Q ss_pred eeeccce-----------eeEEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEE
Q psy13856 101 CLQPKYF-----------KLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASC 163 (271)
Q Consensus 101 ~~~~~~~-----------~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~ 163 (271)
.+..... .......++++++ +.|.. ...+ +.+..+... ....++...+ ++++++++
T Consensus 110 ~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~G--~~~w~~~~~-~~~~~~~~~~----~g~~~v~~ 182 (276)
T 3no2_A 110 VLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPNG--QLLNSVKLS-GTPFSSAFLD----NGDCLVAC 182 (276)
T ss_dssp EEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTTS--CEEEEEECS-SCCCEEEECT----TSCEEEEC
T ss_pred EEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCCC--CEEEEEECC-CCccceeEcC----CCCEEEEe
Confidence 4433211 1112234456655 55555 4446 566666543 4456677788 68999999
Q ss_pred eCCCeEEEEEcCCCceeeeeeeccCC------CCeEEEEEecCCCEEEEEECC--------CcEEEEEeCCCC
Q psy13856 164 SQDRKVIIWTSNDYVTWTPFIMNTFD------DVVWNVSWSLTGDILTVSCGD--------NSVSLWKENTDG 222 (271)
Q Consensus 164 ~~dg~i~iwd~~~~~~~~~~~~~~h~------~~v~~v~~~~~g~~l~s~s~D--------~~v~iw~~~~~~ 222 (271)
+.+++|..+|..+++. +..+.... ..+..+...++|.++++.... +..++++++..+
T Consensus 183 ~~~~~v~~~d~~tG~~--~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g 253 (276)
T 3no2_A 183 GDAHCFVQLNLESNRI--VRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEG 253 (276)
T ss_dssp BTTSEEEEECTTTCCE--EEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTS
T ss_pred CCCCeEEEEeCcCCcE--EEEecCCCCCCccccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCC
Confidence 9888999999997775 33333221 236788888999988887521 244677775444
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=98.86 E-value=4.6e-08 Score=81.45 Aligned_cols=121 Identities=11% Similarity=-0.024 Sum_probs=90.1
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecccee
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFK 108 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~ 108 (271)
|+..|+++ .++.|++||+ ......|... +.++.+.+. .+++++.||.+.+|++ +.
T Consensus 96 d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~----v~~i~~~~p--~~av~~~dG~L~v~dl---~~---------- 155 (388)
T 1xip_A 96 HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKP----VFQLKNVNN--TLVILNSVNDLSALDL---RT---------- 155 (388)
T ss_dssp ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSC----EEEEEECSS--EEEEEETTSEEEEEET---TT----------
T ss_pred CCCEEEEE-cCCcEEEEEchhhhccCccceeecc----eeeEEecCC--CEEEEECCCCEEEEEc---cC----------
Confidence 88889998 8899999998 3344556655 777777654 3889999999999998 22
Q ss_pred eEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeee---
Q psy13856 109 LTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIM--- 185 (271)
Q Consensus 109 ~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--- 185 (271)
+ .... +...|.+++|+|+ | ++.|..||.+++|+...........+
T Consensus 156 --------------------~--~~~~----~~~~Vs~v~WSpk----G--~~vg~~dg~i~~~~~~~~~~~~k~~I~~P 203 (388)
T 1xip_A 156 --------------------K--STKQ----LAQNVTSFDVTNS----Q--LAVLLKDRSFQSFAWRNGEMEKQFEFSLP 203 (388)
T ss_dssp --------------------C--CEEE----EEESEEEEEECSS----E--EEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred --------------------C--cccc----ccCCceEEEEcCC----c--eEEEEcCCcEEEEcCCCccccccceecCC
Confidence 2 1111 3458999999994 6 78899999999998877552101122
Q ss_pred ---c---cCCCCeEEEEEecCCCEEEE
Q psy13856 186 ---N---TFDDVVWNVSWSLTGDILTV 206 (271)
Q Consensus 186 ---~---~h~~~v~~v~~~~~g~~l~s 206 (271)
. +|...|.+|.|.+++.++++
T Consensus 204 p~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 204 SELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp HHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred cccccccCCCeeEEEEEEecCCeEEEE
Confidence 2 36788999999999988876
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=2.1e-06 Score=75.29 Aligned_cols=192 Identities=10% Similarity=0.047 Sum_probs=115.6
Q ss_pred ccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEc----CCCCeEEEEe-CCCcEEEEEeec
Q psy13856 28 TESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALS----PKLNRSATSS-FHEAAKHLGTVQ 95 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s----~~~~~l~s~s-~d~~i~~~d~~~ 95 (271)
.....|||+++.+++.|+.|.+||+ +..+.... . ...++|+ |||+++++++ .++++.++|.
T Consensus 201 ~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~----P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~-- 273 (567)
T 1qks_A 201 ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-E----ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDG-- 273 (567)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-E----EEEEEECCSTTCTTTEEEEEEEETTEEEEEET--
T ss_pred ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-C----CceeEEccccCCCCCEEEEEEccCCeEEEEEC--
Confidence 3445579999999999999999997 22222222 2 4789999 6999877665 5589999997
Q ss_pred CCCCceeecccee----------------eEEEeeccceee------eEEEE-ee-CCceEEeEEecCCCcceEEEEEcc
Q psy13856 96 SSSPACLQPKYFK----------------LTVYSTKLTRIL------ILVRI-CG-GDKWIEETKLENHSDWVRDVAWAP 151 (271)
Q Consensus 96 ~~~~~~~~~~~~~----------------~~~~~~~~~~l~------~~v~i-~~-~~~~~~~~~~~~h~~~v~~v~~~p 151 (271)
.+.+.++..... ....+.....+. +.|.+ .. ......+..+ .......++.|+|
T Consensus 274 -~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~p 351 (567)
T 1qks_A 274 -ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEI-SAERFLHDGGLDG 351 (567)
T ss_dssp -TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEE-ECCSSEEEEEECT
T ss_pred -CCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeee-eccccccCceECC
Confidence 666665543211 111122222222 44444 11 1111112222 2334566889999
Q ss_pred CCCCCCcEEEEEe-CCCeEEEEEcCCCceeeeeee---ccCCCCeEEEEEecCC-CEEEEEE-CCCcEEEEEeCCCC---
Q psy13856 152 SWGLSKCMIASCS-QDRKVIIWTSNDYVTWTPFIM---NTFDDVVWNVSWSLTG-DILTVSC-GDNSVSLWKENTDG--- 222 (271)
Q Consensus 152 ~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~---~~h~~~v~~v~~~~~g-~~l~s~s-~D~~v~iw~~~~~~--- 222 (271)
++++++++. .++.|.++|..+++....... ..|.+....+ ++|++ ...+++. .+++|.+++..+.+
T Consensus 352 ----dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~ 426 (567)
T 1qks_A 352 ----SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPD 426 (567)
T ss_dssp ----TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred ----CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCcc
Confidence 688776555 578999999998764211112 1344323222 57874 4444443 46899999987643
Q ss_pred -ceeEEEEeccc
Q psy13856 223 -AWQCITEMGKT 233 (271)
Q Consensus 223 -~~~~~~~~~~~ 233 (271)
.|+.+.+++..
T Consensus 427 ~~~kvv~~i~~~ 438 (567)
T 1qks_A 427 NAWKILDSFPAL 438 (567)
T ss_dssp TBTSEEEEEECS
T ss_pred ccCEEEEEEecC
Confidence 28888888754
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.85 E-value=7.9e-07 Score=71.23 Aligned_cols=175 Identities=9% Similarity=-0.029 Sum_probs=105.8
Q ss_pred CCCCCCEEEEccCCCeEEeccc----eeee-ccccccccccceEEEEcCCCCeEEEEeC-----------------CCcE
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST----ISLL-QGSVYLRRESNKAGALSPKLNRSATSSF-----------------HEAA 88 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~----~~~~-~~h~~~~~~~i~~~~~s~~~~~l~s~s~-----------------d~~i 88 (271)
..++|.++++...++.|.+||. ...+ ..........+.+++++|+|+++++.+. .+.|
T Consensus 76 ~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l 155 (296)
T 3e5z_A 76 LNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWV 155 (296)
T ss_dssp ECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEE
T ss_pred ECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEE
Confidence 3468998888887899999997 2222 1111111122678999999998887321 2344
Q ss_pred EEEEeecCCCCceeecc---ce-eeEEEeeccceee-----eEEEE--ee-CCce-EEeEEecCCCcceEEEEEccCCCC
Q psy13856 89 KHLGTVQSSSPACLQPK---YF-KLTVYSTKLTRIL-----ILVRI--CG-GDKW-IEETKLENHSDWVRDVAWAPSWGL 155 (271)
Q Consensus 89 ~~~d~~~~~~~~~~~~~---~~-~~~~~~~~~~~l~-----~~v~i--~~-~~~~-~~~~~~~~h~~~v~~v~~~p~~~~ 155 (271)
..++. . +...... .. ....++.+++.++ +.|.+ .. ++.+ .....+..+...+.++++++
T Consensus 156 ~~~~~---~-g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~---- 227 (296)
T 3e5z_A 156 FRLAP---D-GTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDA---- 227 (296)
T ss_dssp EEECT---T-SCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBT----
T ss_pred EEECC---C-CCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECC----
Confidence 34442 2 3322211 22 3344556666555 45555 22 4433 22333333555677899999
Q ss_pred CCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEE-ecCCCEEEEEECCCcEEEEEeCC
Q psy13856 156 SKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSW-SLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 156 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~-~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
+|+++++. ++.|.+||.. ++. ...+..+.. +.+++| .|++..|++++.++ +.-++.++
T Consensus 228 ~G~l~v~~--~~~v~~~~~~-g~~--~~~~~~~~~-~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~ 286 (296)
T 3e5z_A 228 GGLIWASA--GDGVHVLTPD-GDE--LGRVLTPQT-TSNLCFGGPEGRTLYMTVSTE-FWSIETNV 286 (296)
T ss_dssp TSCEEEEE--TTEEEEECTT-SCE--EEEEECSSC-CCEEEEESTTSCEEEEEETTE-EEEEECSC
T ss_pred CCCEEEEc--CCeEEEECCC-CCE--EEEEECCCC-ceeEEEECCCCCEEEEEcCCe-EEEEEccc
Confidence 58877666 7889999986 443 455555666 899999 58999888888763 44444443
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=98.84 E-value=9.1e-08 Score=77.99 Aligned_cols=133 Identities=5% Similarity=-0.024 Sum_probs=93.7
Q ss_pred CCCCCEEEEccCCCeEEeccc--eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceee
Q psy13856 32 LRIGHTLISCDTQAHIGIRST--ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKL 109 (271)
Q Consensus 32 ~~~g~~l~s~s~d~~i~lwd~--~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~ 109 (271)
.+++..++..+.++.++.|.- ...+..+... +.+++|+|++++++++..++.|.+|+. .+++.
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~l~~~~~~~~~i~~~d~---~~~~~-------- 78 (333)
T 2dg1_A 14 SGKSNSAVPIISESELQTITAEPWLEISKKGLQ----LEGLNFDRQGQLFLLDVFEGNIFKINP---ETKEI-------- 78 (333)
T ss_dssp CGGGGCSSCCCCGGGSCEEECEEEEEEESSCCC----EEEEEECTTSCEEEEETTTCEEEEECT---TTCCE--------
T ss_pred cCCccceeEEeecccCcccccceeEEEeccCcc----ccCcEECCCCCEEEEECCCCEEEEEeC---CCCcE--------
Confidence 345555555566788888844 4555666666 789999999998888888999999986 22221
Q ss_pred EEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCC----CeEEEEEcCCCceeeeeee
Q psy13856 110 TVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQD----RKVIIWTSNDYVTWTPFIM 185 (271)
Q Consensus 110 ~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~ 185 (271)
......+...+.+++++| ++.++++...+ +.|.+||...... ...+
T Consensus 79 ------------------------~~~~~~~~~~~~~i~~~~----dg~l~v~~~~~~~~~~~i~~~d~~~~~~--~~~~ 128 (333)
T 2dg1_A 79 ------------------------KRPFVSHKANPAAIKIHK----DGRLFVCYLGDFKSTGGIFAATENGDNL--QDII 128 (333)
T ss_dssp ------------------------EEEEECSSSSEEEEEECT----TSCEEEEECTTSSSCCEEEEECTTSCSC--EEEE
T ss_pred ------------------------EEEeeCCCCCcceEEECC----CCcEEEEeCCCCCCCceEEEEeCCCCEE--EEEE
Confidence 111123557799999999 68888877766 6899999887653 2122
Q ss_pred c--cCCCCeEEEEEecCCCEEEEEEC
Q psy13856 186 N--TFDDVVWNVSWSLTGDILTVSCG 209 (271)
Q Consensus 186 ~--~h~~~v~~v~~~~~g~~l~s~s~ 209 (271)
. .+...++.++++|+|.++++...
T Consensus 129 ~~~~~~~~~~~i~~d~~g~l~v~~~~ 154 (333)
T 2dg1_A 129 EDLSTAYCIDDMVFDSKGGFYFTDFR 154 (333)
T ss_dssp CSSSSCCCEEEEEECTTSCEEEEECC
T ss_pred ccCccCCcccceEECCCCCEEEEecc
Confidence 2 24457899999999998877654
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.83 E-value=3e-08 Score=89.33 Aligned_cols=154 Identities=11% Similarity=-0.016 Sum_probs=98.7
Q ss_pred CCCCCCCEEEEccCCC---eEEeccc------eeee-------ccccccccccceEEEEcCCCCeEE-----EEeCCCcE
Q psy13856 30 SPLRIGHTLISCDTQA---HIGIRST------ISLL-------QGSVYLRRESNKAGALSPKLNRSA-----TSSFHEAA 88 (271)
Q Consensus 30 ~~~~~g~~l~s~s~d~---~i~lwd~------~~~~-------~~h~~~~~~~i~~~~~s~~~~~l~-----s~s~d~~i 88 (271)
.|.++|.+++....++ .-.+|.. ...+ .+|... +.+++|||||++|+ .|+.+..|
T Consensus 74 ~p~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~----~~~~~~SPDG~~la~~~~~~G~~~~~i 149 (695)
T 2bkl_A 74 TPSRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVS----LGTWAVSWDGKKVAFAQKPNAADEAVL 149 (695)
T ss_dssp CCEEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEE----EEEEEECTTSSEEEEEEEETTCSCCEE
T ss_pred CCEEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEE----EEEEEECCCCCEEEEEECCCCCceEEE
Confidence 4557888777666544 3444543 1122 234445 78999999999988 44556789
Q ss_pred EEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCe
Q psy13856 89 KHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK 168 (271)
Q Consensus 89 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~ 168 (271)
++||+ .+++.+. ...+.. .....++|+| |+..|+.++.|..
T Consensus 150 ~v~dl---~tg~~~~------------------------------~~~~~~--~~~~~~~wsp----Dg~~l~~~~~d~~ 190 (695)
T 2bkl_A 150 HVIDV---DSGEWSK------------------------------VDVIEG--GKYATPKWTP----DSKGFYYEWLPTD 190 (695)
T ss_dssp EEEET---TTCCBCS------------------------------SCCBSC--CTTCCCEECT----TSSEEEEEECCCC
T ss_pred EEEEC---CCCCCcC------------------------------CcccCc--ccccceEEec----CCCEEEEEEecCC
Confidence 99998 4433220 000111 1125799999 7999999988776
Q ss_pred -------------EEEEEcCCCcee--eeeeeccCCCCeEEEEEecCCCEEEEEECCC----cEEEEEeCCCCceeEE
Q psy13856 169 -------------VIIWTSNDYVTW--TPFIMNTFDDVVWNVSWSLTGDILTVSCGDN----SVSLWKENTDGAWQCI 227 (271)
Q Consensus 169 -------------i~iwd~~~~~~~--~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~----~v~iw~~~~~~~~~~~ 227 (271)
|++|++.++... .+.....|...+..+.|+|||++|+.++.++ .|++|+... +.+..+
T Consensus 191 ~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~-~~~~~l 267 (695)
T 2bkl_A 191 PSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGE-KDFRLL 267 (695)
T ss_dssp TTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTC-SSCEEE
T ss_pred CCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCC-CceEEe
Confidence 999999876521 1222334556789999999999998887665 566665432 344443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.78 E-value=9.3e-07 Score=72.18 Aligned_cols=169 Identities=8% Similarity=-0.098 Sum_probs=109.6
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc---
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK--- 105 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~--- 105 (271)
++.++++...++.|.+||. +..+.. ... +..++++++++..++...++.|.+||. .+++.....
T Consensus 53 ~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~----p~~i~~~~~g~lyv~~~~~~~v~~iD~---~t~~~~~~i~~g 124 (328)
T 3dsm_A 53 DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTS----PRYIHFLSDEKAYVTQIWDYRIFIINP---KTYEITGYIECP 124 (328)
T ss_dssp TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSS----EEEEEEEETTEEEEEEBSCSEEEEEET---TTTEEEEEEECT
T ss_pred CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCC----CcEEEEeCCCeEEEEECCCCeEEEEEC---CCCeEEEEEEcC
Confidence 4556777777899999998 344432 234 689999999854444448999999998 666655433
Q ss_pred c------eeeEEEeeccceee------eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCC-----
Q psy13856 106 Y------FKLTVYSTKLTRIL------ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQD----- 166 (271)
Q Consensus 106 ~------~~~~~~~~~~~~l~------~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d----- 166 (271)
. .+..+....++.++ +.|.+ ..++ +....+.. ......+.++| ++++++++..+
T Consensus 125 ~~~~~~~~p~~i~~~~~~lyv~~~~~~~~v~viD~~t~--~~~~~i~~-g~~p~~i~~~~----dG~l~v~~~~~~~~~~ 197 (328)
T 3dsm_A 125 DMDMESGSTEQMVQYGKYVYVNCWSYQNRILKIDTETD--KVVDELTI-GIQPTSLVMDK----YNKMWTITDGGYEGSP 197 (328)
T ss_dssp TCCTTTCBCCCEEEETTEEEEEECTTCCEEEEEETTTT--EEEEEEEC-SSCBCCCEECT----TSEEEEEBCCBCTTCS
T ss_pred CccccCCCcceEEEECCEEEEEcCCCCCEEEEEECCCC--eEEEEEEc-CCCccceEEcC----CCCEEEEECCCccCCc
Confidence 2 22222222233333 34555 2333 44444443 23456788999 68887777655
Q ss_pred -----CeEEEEEcCCCceeeeeeecc-CCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 167 -----RKVIIWTSNDYVTWTPFIMNT-FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 167 -----g~i~iwd~~~~~~~~~~~~~~-h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+.|.++|..+.+. ...+.. .......++|+|++..|.++.. .|.+||..++
T Consensus 198 ~~~~~~~v~~id~~t~~v--~~~~~~~~g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~ 254 (328)
T 3dsm_A 198 YGYEAPSLYRIDAETFTV--EKQFKFKLGDWPSEVQLNGTRDTLYWINN--DIWRMPVEAD 254 (328)
T ss_dssp SCBCCCEEEEEETTTTEE--EEEEECCTTCCCEEEEECTTSCEEEEESS--SEEEEETTCS
T ss_pred cccCCceEEEEECCCCeE--EEEEecCCCCCceeEEEecCCCEEEEEcc--EEEEEECCCC
Confidence 7899999988764 333322 1236789999999998888754 8999998765
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.76 E-value=4.9e-07 Score=82.06 Aligned_cols=161 Identities=11% Similarity=-0.007 Sum_probs=97.2
Q ss_pred ccCCCCCCCEEEEccCC-----CeEEeccc--eeeeccccccccccceEEEEcCCCCeEEEEeCCCc-------------
Q psy13856 28 TESPLRIGHTLISCDTQ-----AHIGIRST--ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEA------------- 87 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d-----~~i~lwd~--~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~------------- 87 (271)
...++|||++|+.++.+ ..|++||+ -..+..+... ..+..++|+|| +.|+.++.+..
T Consensus 167 ~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~--~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~ 243 (741)
T 1yr2_A 167 AWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKW--VKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQ 243 (741)
T ss_dssp EEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEE--EESCCCEESTT-SEEEEEECCCC--------CCCCC
T ss_pred eEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCC--ceeccEEEECC-CEEEEEEecCcccccccccCCCCC
Confidence 34455799998877654 46999998 1222222222 00357899999 98888877654
Q ss_pred -EEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCC
Q psy13856 88 -AKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQD 166 (271)
Q Consensus 88 -i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d 166 (271)
|++|++ .++... . ..+.....+...+..+.|+| ||++|+..+.+
T Consensus 244 ~v~~~~l---gt~~~~--------------------------~--~lv~~~~~~~~~~~~~~~Sp----DG~~l~~~~~~ 288 (741)
T 1yr2_A 244 TVWLHRL---GTPQSA--------------------------D--QPVFATPELPKRGHGASVSS----DGRWVVITSSE 288 (741)
T ss_dssp EEEEEET---TSCGGG--------------------------C--EEEECCTTCTTCEEEEEECT----TSCEEEEEEEC
T ss_pred EEEEEEC---CCCchh--------------------------C--EEEeccCCCCeEEEEEEECC----CCCEEEEEEEc
Confidence 444554 111100 0 22222233444688999999 79888877754
Q ss_pred C-----eEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC----CcEEEEEeCCC-CceeEE
Q psy13856 167 R-----KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD----NSVSLWKENTD-GAWQCI 227 (271)
Q Consensus 167 g-----~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D----~~v~iw~~~~~-~~~~~~ 227 (271)
+ .|++||+.++.......+..+...+.... +|+|..|+..+.+ +.|.+|+++.. +.|..+
T Consensus 289 ~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l 358 (741)
T 1yr2_A 289 GTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTV 358 (741)
T ss_dssp TTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEE
T ss_pred cCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEE
Confidence 4 89999998762100223334444444443 4888888887763 45999998764 345443
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.72 E-value=1.6e-06 Score=69.79 Aligned_cols=151 Identities=6% Similarity=-0.019 Sum_probs=99.3
Q ss_pred CCCCCEEEEccCC---------------CeEEeccc---eeeeccccccccccceEEEEc----CCCCeEEEE-eCCCcE
Q psy13856 32 LRIGHTLISCDTQ---------------AHIGIRST---ISLLQGSVYLRRESNKAGALS----PKLNRSATS-SFHEAA 88 (271)
Q Consensus 32 ~~~g~~l~s~s~d---------------~~i~lwd~---~~~~~~h~~~~~~~i~~~~~s----~~~~~l~s~-s~d~~i 88 (271)
.++|.++++...+ +.|..|+. ...+..+... ...++|+ |+++.++.+ ..++.|
T Consensus 125 d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~----~~~i~~~~~~d~dg~~l~v~~~~~~~i 200 (314)
T 1pjx_A 125 DYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQF----PNGIAVRHMNDGRPYQLIVAETPTKKL 200 (314)
T ss_dssp CTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESS----EEEEEEEECTTSCEEEEEEEETTTTEE
T ss_pred CCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCC----cceEEEecccCCCCCEEEEEECCCCeE
Confidence 3678887777655 46666665 2222223333 6789999 999755444 567889
Q ss_pred EEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCC-cceEEEEEccCCCCCCcEEEEEeCCC
Q psy13856 89 KHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHS-DWVRDVAWAPSWGLSKCMIASCSQDR 167 (271)
Q Consensus 89 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~-~~v~~v~~~p~~~~~~~~l~s~~~dg 167 (271)
.+|+.. ..+.... ......+.++. .....+++++ ++.++++...++
T Consensus 201 ~~~~~~--~~g~~~~---------------------------~~~~~~~~~~~~~~p~~i~~d~----~G~l~v~~~~~~ 247 (314)
T 1pjx_A 201 WSYDIK--GPAKIEN---------------------------KKVWGHIPGTHEGGADGMDFDE----DNNLLVANWGSS 247 (314)
T ss_dssp EEEEEE--ETTEEEE---------------------------EEEEEECCCCSSCEEEEEEEBT----TCCEEEEEETTT
T ss_pred EEEECC--CCCcccc---------------------------ceEEEECCCCCCCCCCceEECC----CCCEEEEEcCCC
Confidence 899862 0111100 01222333443 5677899999 688888888889
Q ss_pred eEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEE-ECCCcEEEEEeCCC
Q psy13856 168 KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVS-CGDNSVSLWKENTD 221 (271)
Q Consensus 168 ~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~-s~D~~v~iw~~~~~ 221 (271)
.|.+||..+++. ...+..+...+.+++|+|+|..|+.+ ..++.|..|++...
T Consensus 248 ~i~~~d~~~g~~--~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 248 HIEVFGPDGGQP--KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEECTTCBSC--SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEEEcCCCCcE--eEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 999999885553 34445555789999999999955544 45678999987643
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=98.63 E-value=7.9e-06 Score=66.63 Aligned_cols=176 Identities=7% Similarity=0.005 Sum_probs=103.4
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeecccc-ccccccceEEEEcCCCCeEEEEe--CCCcEEEEEeecCCCCceeec
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSV-YLRRESNKAGALSPKLNRSATSS--FHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~-~~~~~~i~~~~~s~~~~~l~s~s--~d~~i~~~d~~~~~~~~~~~~ 104 (271)
+++.++++...++.|.+||. ...+.... .........+++ ++..++.+. .++.|.++|. .+++....
T Consensus 93 ~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~---~t~~~~~~ 167 (328)
T 3dsm_A 93 SDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDT---ETDKVVDE 167 (328)
T ss_dssp ETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEET---TTTEEEEE
T ss_pred CCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEEC---CCCeEEEE
Confidence 57766666657899999998 22333222 000001567777 344555554 4889999998 66665544
Q ss_pred cce----eeEEEeeccceee---e------------EEEEeeCCceEEeEEecCC-CcceEEEEEccCCCCCCcEEEEEe
Q psy13856 105 KYF----KLTVYSTKLTRIL---I------------LVRICGGDKWIEETKLENH-SDWVRDVAWAPSWGLSKCMIASCS 164 (271)
Q Consensus 105 ~~~----~~~~~~~~~~~l~---~------------~v~i~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~~~~l~s~~ 164 (271)
... ....++.+++.++ + .+.+.+....+....+.-. ......++++| ++.++..+.
T Consensus 168 i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~----d~~~lyv~~ 243 (328)
T 3dsm_A 168 LTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNG----TRDTLYWIN 243 (328)
T ss_dssp EECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECT----TSCEEEEES
T ss_pred EEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEec----CCCEEEEEc
Confidence 321 2223334455444 2 3444222111444444321 24678999999 577776665
Q ss_pred CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEec-CCCEEEEE----ECCCcEEEEEeC
Q psy13856 165 QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSL-TGDILTVS----CGDNSVSLWKEN 219 (271)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~----s~D~~v~iw~~~ 219 (271)
. .|.+||..+++......+.........++++| ++.++++. ..++.|.+|+.+
T Consensus 244 ~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 244 N--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp S--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred c--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 4 89999998766311111222245788999999 56666666 568899999987
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.8e-05 Score=62.88 Aligned_cols=147 Identities=10% Similarity=-0.024 Sum_probs=101.4
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc---eeee--ccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST---ISLL--QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~---~~~~--~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
......++|.++++...++.|..||. ...+ ..+... +.+++++++++..++...++.|..|+. . +..
T Consensus 18 ~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~----~~~i~~~~~g~l~v~~~~~~~i~~~~~---~-g~~ 89 (299)
T 2z2n_A 18 YGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAK----VMCLTISSDGEVWFTENAANKIGRITK---K-GII 89 (299)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCC----EEEEEECTTSCEEEEETTTTEEEEECT---T-SCE
T ss_pred cceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCc----eeeEEECCCCCEEEeCCCCCeEEEECC---C-CcE
Confidence 33334468888887777799999987 2222 123344 789999999988777766788888875 1 110
Q ss_pred eeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceee
Q psy13856 102 LQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWT 181 (271)
Q Consensus 102 ~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 181 (271)
.. ..+......+.+++++| ++.++++...++.|.+||. ++...
T Consensus 90 ------------------------------~~-~~~~~~~~~~~~i~~~~----~g~l~v~~~~~~~i~~~d~-~g~~~- 132 (299)
T 2z2n_A 90 ------------------------------KE-YTLPNPDSAPYGITEGP----NGDIWFTEMNGNRIGRITD-DGKIR- 132 (299)
T ss_dssp ------------------------------EE-EECSSTTCCEEEEEECT----TSCEEEEETTTTEEEEECT-TCCEE-
T ss_pred ------------------------------EE-EeCCCcCCCceeeEECC----CCCEEEEecCCceEEEECC-CCCEE-
Confidence 11 11122345688999998 5888888777889999998 44421
Q ss_pred eeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEe
Q psy13856 182 PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 182 ~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~ 218 (271)
..........+..++++++|.++++...++.|..|+.
T Consensus 133 ~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~ 169 (299)
T 2z2n_A 133 EYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE 169 (299)
T ss_dssp EEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred EecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC
Confidence 2222334457899999999988887777788999987
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=98.59 E-value=2.1e-05 Score=63.15 Aligned_cols=173 Identities=6% Similarity=-0.041 Sum_probs=104.9
Q ss_pred CCCCEEEE-------ccCCCeEEeccc----eeeecc-----ccccccccceEEEEcCC-CCeEEEEeCCCcEEEEEeec
Q psy13856 33 RIGHTLIS-------CDTQAHIGIRST----ISLLQG-----SVYLRRESNKAGALSPK-LNRSATSSFHEAAKHLGTVQ 95 (271)
Q Consensus 33 ~~g~~l~s-------~s~d~~i~lwd~----~~~~~~-----h~~~~~~~i~~~~~s~~-~~~l~s~s~d~~i~~~d~~~ 95 (271)
++|.++++ +..++.|..||. ...+.. +... +.+++++++ ++++++. ....|.+|+.
T Consensus 27 ~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~----~~~i~~~~~~g~l~v~~-~~~~l~~~d~-- 99 (314)
T 1pjx_A 27 KNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGI----PAGCQCDRDANQLFVAD-MRLGLLVVQT-- 99 (314)
T ss_dssp TTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECC----EEEEEECSSSSEEEEEE-TTTEEEEEET--
T ss_pred CCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCC----CceEEEecCCCcEEEEE-CCCCEEEEeC--
Confidence 68888888 777899999996 322222 4445 789999999 6655544 4446778886
Q ss_pred CCCCceeec-c--------c-eeeEEEeeccceee---eE---------------EEE---eeCCceEEeEEecCCCcce
Q psy13856 96 SSSPACLQP-K--------Y-FKLTVYSTKLTRIL---IL---------------VRI---CGGDKWIEETKLENHSDWV 144 (271)
Q Consensus 96 ~~~~~~~~~-~--------~-~~~~~~~~~~~~l~---~~---------------v~i---~~~~~~~~~~~~~~h~~~v 144 (271)
. ++.... . . .....+..+++.++ .. ..+ ...+. .. .+..+....
T Consensus 100 -~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~--~~-~~~~~~~~~ 174 (314)
T 1pjx_A 100 -D-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQ--MI-QVDTAFQFP 174 (314)
T ss_dssp -T-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSC--EE-EEEEEESSE
T ss_pred -C-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCC--EE-EeccCCCCc
Confidence 3 433322 1 0 12223333444443 10 222 22232 11 122233456
Q ss_pred EEEEEc----cCCCCCCcEE-EEEeCCCeEEEEEcC-CCceee---eeeeccCC-CCeEEEEEecCCCEEEEEECCCcEE
Q psy13856 145 RDVAWA----PSWGLSKCMI-ASCSQDRKVIIWTSN-DYVTWT---PFIMNTFD-DVVWNVSWSLTGDILTVSCGDNSVS 214 (271)
Q Consensus 145 ~~v~~~----p~~~~~~~~l-~s~~~dg~i~iwd~~-~~~~~~---~~~~~~h~-~~v~~v~~~~~g~~l~s~s~D~~v~ 214 (271)
..++++ | ++..+ ++...++.|.+||.. .+.... ...+..+. ..+..++++++|.++++...++.|.
T Consensus 175 ~~i~~~~~~d~----dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~ 250 (314)
T 1pjx_A 175 NGIAVRHMNDG----RPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp EEEEEEECTTS----CEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred ceEEEecccCC----CCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEE
Confidence 789999 8 57554 555668899999976 332110 12233333 5678899999999988888889999
Q ss_pred EEEeCCC
Q psy13856 215 LWKENTD 221 (271)
Q Consensus 215 iw~~~~~ 221 (271)
+|+.+++
T Consensus 251 ~~d~~~g 257 (314)
T 1pjx_A 251 VFGPDGG 257 (314)
T ss_dssp EECTTCB
T ss_pred EEcCCCC
Confidence 9998754
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=98.58 E-value=6.6e-06 Score=74.65 Aligned_cols=182 Identities=11% Similarity=-0.032 Sum_probs=106.6
Q ss_pred ccCCCCCCCEEEEccCCCe--------------EEeccc-------eeeec--cccccccccceEEEEcCCCCeEEEEeC
Q psy13856 28 TESPLRIGHTLISCDTQAH--------------IGIRST-------ISLLQ--GSVYLRRESNKAGALSPKLNRSATSSF 84 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d~~--------------i~lwd~-------~~~~~--~h~~~~~~~i~~~~~s~~~~~l~s~s~ 84 (271)
.....|| +.|+.++.|+. |.+|++ ...+. .+... +..+.|+|||++|+..+.
T Consensus 213 ~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~----~~~~~~SpDG~~l~~~~~ 287 (741)
T 1yr2_A 213 GLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKR----GHGASVSSDGRWVVITSS 287 (741)
T ss_dssp CCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTC----EEEEEECTTSCEEEEEEE
T ss_pred cEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeE----EEEEEECCCCCEEEEEEE
Confidence 4445678 87777776554 888887 11222 22234 678999999998887775
Q ss_pred CC-----cEEEEEeecCC-C-Cceeecc-ceeeEEEeeccceee---------eEEEE-e-eCCceEEeEEecCCCcceE
Q psy13856 85 HE-----AAKHLGTVQSS-S-PACLQPK-YFKLTVYSTKLTRIL---------ILVRI-C-GGDKWIEETKLENHSDWVR 145 (271)
Q Consensus 85 d~-----~i~~~d~~~~~-~-~~~~~~~-~~~~~~~~~~~~~l~---------~~v~i-~-~~~~~~~~~~~~~h~~~v~ 145 (271)
++ .|++||...+. . ...+... .........+++.++ ..+.+ . ....-.....+..+...+.
T Consensus 288 ~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~ 367 (741)
T 1yr2_A 288 EGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFVDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLE 367 (741)
T ss_dssp CTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEE
T ss_pred ccCCCcceEEEEECCCCCCcccEEecCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEE
Confidence 44 78889984220 1 1111111 111222335566554 22444 2 2210022333444555666
Q ss_pred EEEEccCCCCCCcEEEEEeCCCeEEEEEcC-CCceeeeeeecc-CCCCeEEEEEecCCCEEEEE-E---CCCcEEEEEeC
Q psy13856 146 DVAWAPSWGLSKCMIASCSQDRKVIIWTSN-DYVTWTPFIMNT-FDDVVWNVSWSLTGDILTVS-C---GDNSVSLWKEN 219 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~-h~~~v~~v~~~~~g~~l~s~-s---~D~~v~iw~~~ 219 (271)
.+.+.. +.++++...|+..++|.+. .+.. ...+.. +.+.+..++++|++..++.. + ..++|++||+.
T Consensus 368 ~~~~~~-----~~lv~~~~~dg~~~l~~~~~~g~~--~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~ 440 (741)
T 1yr2_A 368 SVGIAG-----NRLFASYIHDAKSQVLAFDLDGKP--AGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPA 440 (741)
T ss_dssp EEEEEB-----TEEEEEEEETTEEEEEEEETTSCE--EEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETT
T ss_pred EEEEEC-----CEEEEEEEECCEEEEEEEeCCCCc--eeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECC
Confidence 777764 6788889999988877665 2332 333433 35678889999998755533 2 24689999987
Q ss_pred CC
Q psy13856 220 TD 221 (271)
Q Consensus 220 ~~ 221 (271)
++
T Consensus 441 tg 442 (741)
T 1yr2_A 441 TA 442 (741)
T ss_dssp TT
T ss_pred CC
Confidence 65
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.55 E-value=7e-05 Score=59.96 Aligned_cols=171 Identities=9% Similarity=-0.053 Sum_probs=105.3
Q ss_pred CCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc----
Q psy13856 34 IGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK---- 105 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~---- 105 (271)
++.++++...++.|..||. ...+ ..... +.+++++++|+++++ . +..|.+||. .++......
T Consensus 24 ~~~l~~~d~~~~~i~~~d~~~~~~~~~-~~~~~----~~~i~~~~dG~l~v~-~-~~~l~~~d~---~~g~~~~~~~~~~ 93 (297)
T 3g4e_A 24 SNSLLFVDIPAKKVCRWDSFTKQVQRV-TMDAP----VSSVALRQSGGYVAT-I-GTKFCALNW---KEQSAVVLATVDN 93 (297)
T ss_dssp TTEEEEEETTTTEEEEEETTTCCEEEE-ECSSC----EEEEEEBTTSSEEEE-E-TTEEEEEET---TTTEEEEEEECCT
T ss_pred CCEEEEEECCCCEEEEEECCCCcEEEE-eCCCc----eEEEEECCCCCEEEE-E-CCeEEEEEC---CCCcEEEEEecCC
Confidence 4667888888899999998 2222 23345 889999999995554 3 567778886 444332211
Q ss_pred -----ceeeEEEeeccceeeeEE--------------EE---eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEE-EE
Q psy13856 106 -----YFKLTVYSTKLTRILILV--------------RI---CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMI-AS 162 (271)
Q Consensus 106 -----~~~~~~~~~~~~~l~~~v--------------~i---~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l-~s 162 (271)
......+..+++.+++.. .+ ...+. . ..+..+......++|+| +++.+ ++
T Consensus 94 ~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~--~-~~~~~~~~~pngi~~sp----dg~~lyv~ 166 (297)
T 3g4e_A 94 DKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHH--V-KKYFDQVDISNGLDWSL----DHKIFYYI 166 (297)
T ss_dssp TCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSC--E-EEEEEEESBEEEEEECT----TSCEEEEE
T ss_pred CCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCC--E-EEEeeccccccceEEcC----CCCEEEEe
Confidence 112233444455544221 12 22231 1 11222334567899999 67655 56
Q ss_pred EeCCCeEEEEEcC--CCceeeee---eeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 163 CSQDRKVIIWTSN--DYVTWTPF---IMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 163 ~~~dg~i~iwd~~--~~~~~~~~---~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.+.++.|.+|++. ++...... .+..+......++++++|.+.++...++.|..|+..++
T Consensus 167 ~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG 230 (297)
T 3g4e_A 167 DSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG 230 (297)
T ss_dssp EGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC
T ss_pred cCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc
Confidence 6668899999974 44321111 12233456788999999998888888889999998765
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.8e-05 Score=61.77 Aligned_cols=142 Identities=12% Similarity=-0.018 Sum_probs=97.8
Q ss_pred CCCCEEEEccCCCeEEeccc---eeee--ccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccce
Q psy13856 33 RIGHTLISCDTQAHIGIRST---ISLL--QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF 107 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~---~~~~--~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~ 107 (271)
++|.++++...++.|..||. ...+ ..+... +.++++.++++..++...++.|..++. + +..
T Consensus 108 ~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~----~~~i~~~~~g~l~v~~~~~~~i~~~~~-~---g~~------ 173 (299)
T 2z2n_A 108 PNGDIWFTEMNGNRIGRITDDGKIREYELPNKGSY----PSFITLGSDNALWFTENQNNAIGRITE-S---GDI------ 173 (299)
T ss_dssp TTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCC----EEEEEECTTSCEEEEETTTTEEEEECT-T---CCE------
T ss_pred CCCCEEEEecCCceEEEECCCCCEEEecCCCCCCC----CceEEEcCCCCEEEEeCCCCEEEEEcC-C---CcE------
Confidence 57888888777789999987 2211 222334 789999999987777766778877774 1 111
Q ss_pred eeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeecc
Q psy13856 108 KLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187 (271)
Q Consensus 108 ~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 187 (271)
.. ..+..+...+.++++++ ++.++++...++.|.+||. ++... ......
T Consensus 174 ------------------------~~-~~~~~~~~~~~~i~~~~----~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~ 222 (299)
T 2z2n_A 174 ------------------------TE-FKIPTPASGPVGITKGN----DDALWFVEIIGNKIGRITT-SGEIT-EFKIPT 222 (299)
T ss_dssp ------------------------EE-EECSSTTCCEEEEEECT----TSSEEEEETTTTEEEEECT-TCCEE-EEECSS
T ss_pred ------------------------EE-eeCCCCCCcceeEEECC----CCCEEEEccCCceEEEECC-CCcEE-EEECCC
Confidence 11 11223345678899999 5787777777889999998 55421 222333
Q ss_pred CCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 188 h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
+...+.+++++++|.++++...++.|..|+.+
T Consensus 223 ~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~ 254 (299)
T 2z2n_A 223 PNARPHAITAGAGIDLWFTEWGANKIGRLTSN 254 (299)
T ss_dssp TTCCEEEEEECSTTCEEEEETTTTEEEEEETT
T ss_pred CCCCceeEEECCCCCEEEeccCCceEEEECCC
Confidence 45678999999999977766678899999973
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=98.53 E-value=4.4e-06 Score=69.13 Aligned_cols=126 Identities=5% Similarity=-0.059 Sum_probs=85.7
Q ss_pred CCCCEEEEccCCCeEEeccc----ee---eecc------ccccccccceEEEEcCCCCeEEEEeC-----------CCcE
Q psy13856 33 RIGHTLISCDTQAHIGIRST----IS---LLQG------SVYLRRESNKAGALSPKLNRSATSSF-----------HEAA 88 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~----~~---~~~~------h~~~~~~~i~~~~~s~~~~~l~s~s~-----------d~~i 88 (271)
+++..++..+.++.+.++|+ .. .+.- +..........++|+|+++.++.+.. ...|
T Consensus 209 ~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v 288 (361)
T 2oiz_A 209 LDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEI 288 (361)
T ss_dssp ECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEE
T ss_pred ccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceE
Confidence 55666666677888999987 11 1110 01110000223789999887776543 3478
Q ss_pred EEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCe
Q psy13856 89 KHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK 168 (271)
Q Consensus 89 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~ 168 (271)
.+||. . +. +.+..+..+. ..+++|+| |++++++++. +.
T Consensus 289 ~viD~---~------------------------------t~--~~v~~i~~~~--p~~ia~sp----dg~~l~v~n~-~~ 326 (361)
T 2oiz_A 289 WVMDT---K------------------------------TK--QRVARIPGRD--ALSMTIDQ----QRNLMLTLDG-GN 326 (361)
T ss_dssp EEEET---T------------------------------TT--EEEEEEECTT--CCEEEEET----TTTEEEEECS-SC
T ss_pred EEEEC---C------------------------------CC--cEEEEEecCC--eeEEEECC----CCCEEEEeCC-Ce
Confidence 88887 2 22 4555566565 89999999 7888888886 99
Q ss_pred EEEEEcCCC--ceeeeeeeccCCCCeEEEEEecCCC
Q psy13856 169 VIIWTSNDY--VTWTPFIMNTFDDVVWNVSWSLTGD 202 (271)
Q Consensus 169 i~iwd~~~~--~~~~~~~~~~h~~~v~~v~~~~~g~ 202 (271)
|.+||..++ +. ...+..+....+.++++|+|.
T Consensus 327 v~v~D~~t~~l~~--~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 327 VNVYDISQPEPKL--LRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp EEEEECSSSSCEE--EEEETTSCSSEEEEEECCCSC
T ss_pred EEEEECCCCccee--eEEeccCCCCcEEEEecCCCC
Confidence 999999998 54 556566777888999999985
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.52 E-value=4.8e-05 Score=64.05 Aligned_cols=172 Identities=5% Similarity=-0.127 Sum_probs=107.7
Q ss_pred CCCCCCCEEEEccCCC--eEEeccc-----eeee----ccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 30 SPLRIGHTLISCDTQA--HIGIRST-----ISLL----QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 30 ~~~~~g~~l~s~s~d~--~i~lwd~-----~~~~----~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
...++++.|++++.++ .|.+++. ...+ ...... +.+++++|++..|+.+..++.|+.|+. ..
T Consensus 177 a~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~----p~~iav~p~~g~lyv~d~~~~I~~~d~---~~ 249 (409)
T 3hrp_A 177 AVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGK----IGAVALDETEEWLYFVDSNKNFGRFNV---KT 249 (409)
T ss_dssp EECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSC----CCBCEECTTSSEEEEECTTCEEEEEET---TT
T ss_pred eEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCC----cEEEEEeCCCCeEEEEECCCcEEEEEC---CC
Confidence 3446888888877766 6777776 1222 113344 789999995555555777888999987 33
Q ss_pred Cceeec----c----cee---eEEEeec-cceee-----eEEEE-eeCCceEEeEEecCCC---------------cceE
Q psy13856 99 PACLQP----K----YFK---LTVYSTK-LTRIL-----ILVRI-CGGDKWIEETKLENHS---------------DWVR 145 (271)
Q Consensus 99 ~~~~~~----~----~~~---~~~~~~~-~~~l~-----~~v~i-~~~~~~~~~~~~~~h~---------------~~v~ 145 (271)
+..... . ... ...+... +..++ +.|.. ..++. ...+.++. ....
T Consensus 250 ~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~---~~~~~g~~~~~g~~dg~~~~~~~~~P~ 326 (409)
T 3hrp_A 250 QEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGE---CEWFCGSATQKTVQDGLREEALFAQPN 326 (409)
T ss_dssp CCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCC---EEEEEECTTCCSCBCEEGGGCBCSSEE
T ss_pred CCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCC---EEEEEeCCCCCCcCCCcccccEeCCCe
Confidence 332211 0 111 3444443 33333 44444 33332 22222221 3467
Q ss_pred EEEEccCCCCCCcEEEEEe-CCCeEEEEEcCCCceeeeeeeccC---------------CCCeEEEEEecCCCEEEEEEC
Q psy13856 146 DVAWAPSWGLSKCMIASCS-QDRKVIIWTSNDYVTWTPFIMNTF---------------DDVVWNVSWSLTGDILTVSCG 209 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~h---------------~~~v~~v~~~~~g~~l~s~s~ 209 (271)
.++++| ++.++++-. .++.|+.|+..++. ...+.++ -.....++++++|.++++-..
T Consensus 327 gia~d~----dG~lyvad~~~~~~I~~~~~~~G~---v~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~ 399 (409)
T 3hrp_A 327 GMTVDE----DGNFYIVDGFKGYCLRKLDILDGY---VSTVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAW 399 (409)
T ss_dssp EEEECT----TCCEEEEETTTTCEEEEEETTTTE---EEEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEEST
T ss_pred EEEEeC----CCCEEEEeCCCCCEEEEEECCCCE---EEEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECC
Confidence 899999 688888887 88999999976665 3333333 235789999999888888888
Q ss_pred CCcEEEEEe
Q psy13856 210 DNSVSLWKE 218 (271)
Q Consensus 210 D~~v~iw~~ 218 (271)
++.|+.+.+
T Consensus 400 n~~Ir~i~~ 408 (409)
T 3hrp_A 400 GKAIRKYAV 408 (409)
T ss_dssp TCEEEEEEE
T ss_pred CCeEEEEEe
Confidence 888888775
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.50 E-value=1.6e-07 Score=78.19 Aligned_cols=169 Identities=10% Similarity=-0.018 Sum_probs=82.4
Q ss_pred CCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 30 SPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 30 ~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
+|.-++..+++++.|+.|..||. +..+.. +. +.+..+..++..+++++.|+.++.||. .+++.+..
T Consensus 4 sP~v~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~----~~s~p~~~~g~~~v~~s~dg~l~a~d~---~tG~~~w~ 74 (369)
T 2hz6_A 4 TVTLPETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DP----VLQVPTHVEEPAFLPDPNDGSLYTLGS---KNNEGLTK 74 (369)
T ss_dssp ----CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CC----SCCCC-----CCEEECTTTCCEEEC--------CCSEE
T ss_pred CCeeeCCEEEEEcCCCEEEEEECCCCCEEEEecC--CC----ceecceEcCCCEEEEeCCCCEEEEEEC---CCCceeee
Confidence 45557888999999999999997 333333 33 555556677878888889999999998 55554332
Q ss_pred cce--e----eE-EEeeccceee----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEE
Q psy13856 105 KYF--K----LT-VYSTKLTRIL----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVII 171 (271)
Q Consensus 105 ~~~--~----~~-~~~~~~~~l~----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~i 171 (271)
..+ + .. .....+..++ +.+.. ..++ +.+..+..+. ...++| ++..+++++.|+.|+.
T Consensus 75 ~~~~~~~~~~~sp~~~~~~~v~~g~~dg~v~a~D~~tG--~~~w~~~~~~----~~~~~p----~~~~v~~~~~dg~v~a 144 (369)
T 2hz6_A 75 LPFTIPELVQASPCRSSDGILYMGKKQDIWYVIDLLTG--EKQQTLSSAF----ADSLSP----STSLLYLGRTEYTITM 144 (369)
T ss_dssp CSCCHHHHHTTCSCC-----CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEEC
T ss_pred eeccCccccccCceEecCCEEEEEeCCCEEEEEECCCC--cEEEEecCCC----cccccc----cCCEEEEEecCCEEEE
Confidence 211 0 00 0001122222 44444 3344 3444444332 234566 4778888899999999
Q ss_pred EEcCCCce-eeeeeeccCCCCeEEEEEecCC---CEEEEEECCCcEEEEEeCCCC
Q psy13856 172 WTSNDYVT-WTPFIMNTFDDVVWNVSWSLTG---DILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 172 wd~~~~~~-~~~~~~~~h~~~v~~v~~~~~g---~~l~s~s~D~~v~iw~~~~~~ 222 (271)
||.++++. |.. ..... ....+.++. ..+++++.|+.|+.||.+++.
T Consensus 145 ~d~~tG~~~W~~-~~~~~----~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~ 194 (369)
T 2hz6_A 145 YDTKTRELRWNA-TYFDY----AASLPEDDVDYKMSHFVSNGDGLVVTVDSESGD 194 (369)
T ss_dssp CCSSSSSCCCEE-EEEEE----CCBCCCCCTTCCCCEEEEETSCEEEEECTTTCC
T ss_pred EECCCCCEEEeE-ecccc----cCccccCCccccceEEEECCCCEEEEEECCCCc
Confidence 99998764 211 11111 112233322 457778889999999998764
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=98.49 E-value=2.1e-05 Score=66.26 Aligned_cols=177 Identities=7% Similarity=-0.115 Sum_probs=105.9
Q ss_pred CCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCC--cEEEEEeecCCCCcee----
Q psy13856 33 RIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHE--AAKHLGTVQSSSPACL---- 102 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~--~i~~~d~~~~~~~~~~---- 102 (271)
++|+++++...++.|+.||. +..+...... .. ++|+++++.|+.+..++ .|..++.........+
T Consensus 140 ~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~----~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~ 214 (409)
T 3hrp_A 140 GNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG----GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLG 214 (409)
T ss_dssp STTEEEEEETTTTEEEEEETTTTEEEEEEETCCB----CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECC
T ss_pred CCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC----Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeecc
Confidence 68888888888899999998 3333222233 44 99999999988888766 6777776211111111
Q ss_pred e-ccce-eeEEEee-ccceee----eEEEE-ee-CCceEEeEE--ecCCCcce--EEEEEccCCCCCCcEEEEEeCCCeE
Q psy13856 103 Q-PKYF-KLTVYST-KLTRIL----ILVRI-CG-GDKWIEETK--LENHSDWV--RDVAWAPSWGLSKCMIASCSQDRKV 169 (271)
Q Consensus 103 ~-~~~~-~~~~~~~-~~~~l~----~~v~i-~~-~~~~~~~~~--~~~h~~~v--~~v~~~p~~~~~~~~l~s~~~dg~i 169 (271)
. .... ....+.. .+..++ +.|.. .. .+....... ..++.... ..++|+|. ++.++++-..++.|
T Consensus 215 ~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~---~g~lyv~d~~~~~I 291 (409)
T 3hrp_A 215 STFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFV---DSNFYMSDQNLSSV 291 (409)
T ss_dssp TTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETT---TTEEEEEETTTTEE
T ss_pred chhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCC---CCEEEEEeCCCCEE
Confidence 1 1111 1222333 233333 44444 22 221111111 12222222 38999995 47777777788999
Q ss_pred EEEEcCCCceeeeeeeccC---------------CCCeEEEEEecCCCEEEEEE-CCCcEEEEEeCCC
Q psy13856 170 IIWTSNDYVTWTPFIMNTF---------------DDVVWNVSWSLTGDILTVSC-GDNSVSLWKENTD 221 (271)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~h---------------~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~~~ 221 (271)
+.|+.... ...+.++ -.....++++++|.++++-+ .++.|+.|++.++
T Consensus 292 ~~~~~~g~----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G 355 (409)
T 3hrp_A 292 YKITPDGE----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG 355 (409)
T ss_dssp EEECTTCC----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT
T ss_pred EEEecCCC----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC
Confidence 99987643 1222222 13578999999999888877 7899999997644
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.3e-05 Score=64.53 Aligned_cols=144 Identities=9% Similarity=-0.043 Sum_probs=95.4
Q ss_pred CCCC-EEEEccCCCeEEeccc---eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecccee
Q psy13856 33 RIGH-TLISCDTQAHIGIRST---ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFK 108 (271)
Q Consensus 33 ~~g~-~l~s~s~d~~i~lwd~---~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~ 108 (271)
++|+ ++++...++.|..|+. ...+..+... +.+++++++|+++++...++.|..|+. . +....
T Consensus 54 ~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~----~~gl~~d~dG~l~v~~~~~~~v~~~~~---~-g~~~~----- 120 (305)
T 3dr2_A 54 EAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAF----TNGNAVDAQQRLVHCEHGRRAITRSDA---D-GQAHL----- 120 (305)
T ss_dssp GGGTEEEEEETTTTEEEEEETTSCEEEEEESCSC----EEEEEECTTSCEEEEETTTTEEEEECT---T-SCEEE-----
T ss_pred CCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCc----cceeeECCCCCEEEEECCCCEEEEECC---C-CCEEE-----
Confidence 5777 7788888899999987 4445555555 789999999987666555677877775 2 22111
Q ss_pred eEEEeeccceeeeEEEEeeCCceEEeEEecCC-CcceEEEEEccCCCCCCcEEEE----EeC-------------CCeEE
Q psy13856 109 LTVYSTKLTRILILVRICGGDKWIEETKLENH-SDWVRDVAWAPSWGLSKCMIAS----CSQ-------------DRKVI 170 (271)
Q Consensus 109 ~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h-~~~v~~v~~~p~~~~~~~~l~s----~~~-------------dg~i~ 170 (271)
......+. ...+.+++++| ++.++++ |.. .+.|.
T Consensus 121 ------------------------~~~~~~~~~~~~~~~i~~d~----dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~ 172 (305)
T 3dr2_A 121 ------------------------LVGRYAGKRLNSPNDLIVAR----DGAIWFTDPPFGLRKPSQGCPADPELAHHSVY 172 (305)
T ss_dssp ------------------------EECEETTEECSCCCCEEECT----TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEE
T ss_pred ------------------------EEeccCCCccCCCCCEEECC----CCCEEEeCcCCCccccccccccccccCCCeEE
Confidence 00011111 23466799999 6888886 332 25677
Q ss_pred EEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC------CcEEEEEeCCC
Q psy13856 171 IWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD------NSVSLWKENTD 221 (271)
Q Consensus 171 iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D------~~v~iw~~~~~ 221 (271)
.+|..+++. ..+. .....+.++|+|+++.|+.+... +.|..|++..+
T Consensus 173 ~~d~~~g~~---~~~~-~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~ 225 (305)
T 3dr2_A 173 RLPPDGSPL---QRMA-DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG 225 (305)
T ss_dssp EECSSSCCC---EEEE-EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred EEcCCCCcE---EEEe-cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence 777765553 2222 33456889999999988777665 68999998755
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00016 Score=57.26 Aligned_cols=173 Identities=9% Similarity=-0.049 Sum_probs=109.4
Q ss_pred CCCCCEEEEccCCCeEEeccc---eeee--ccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-
Q psy13856 32 LRIGHTLISCDTQAHIGIRST---ISLL--QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK- 105 (271)
Q Consensus 32 ~~~g~~l~s~s~d~~i~lwd~---~~~~--~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~- 105 (271)
.++|.++++...++.|..+|. ...+ ...... +.++++.+++++.++...++.|..++. . +......
T Consensus 70 ~~~g~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~----~~~i~~~~~g~l~v~~~~~~~i~~~~~---~-g~~~~~~~ 141 (300)
T 2qc5_A 70 SSLGDIWFTENGANKIGKLSKKGGFTEYPLPQPDSG----PYGITEGLNGDIWFTQLNGDRIGKLTA---D-GTIYEYDL 141 (300)
T ss_dssp CTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCC----EEEEEECSTTCEEEEETTTTEEEEECT---T-SCEEEEEC
T ss_pred CCCCCEEEEecCCCeEEEECCCCCeEEecCCCCCCC----CccceECCCCCEEEEccCCCeEEEECC---C-CCEEEccC
Confidence 367888887777788999987 2222 112234 789999999988777766788888875 3 3332211
Q ss_pred ----ceee-EEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEc
Q psy13856 106 ----YFKL-TVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTS 174 (271)
Q Consensus 106 ----~~~~-~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~ 174 (271)
..+. .....+++..+ +.+.. ...+.+.. .....+...+.++++++ ++.++++....+.|.+|+.
T Consensus 142 ~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~-~~~~~~~~~~~~i~~d~----~g~l~v~~~~~~~i~~~~~ 216 (300)
T 2qc5_A 142 PNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEE-YPLPTNAAAPVGITSGN----DGALWFVEIMGNKIGRITT 216 (300)
T ss_dssp SSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEE-EECSSTTCCEEEEEECT----TSSEEEEETTTTEEEEECT
T ss_pred CCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEE-eeCCCCCCCcceEEECC----CCCEEEEccCCCEEEEEcC
Confidence 1122 22333455443 33444 33443222 22233445688999998 5787777777788999998
Q ss_pred CCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 175 NDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 175 ~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
++... ......+...+.+++++++|.+.++...++.|..|+..
T Consensus 217 -~g~~~-~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~ 259 (300)
T 2qc5_A 217 -TGEIS-EYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND 259 (300)
T ss_dssp -TCCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT
T ss_pred -CCcEE-EEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC
Confidence 44321 22233345678899999999977776667899999973
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00024 Score=58.94 Aligned_cols=74 Identities=16% Similarity=0.065 Sum_probs=52.8
Q ss_pred EEEEccCCCCCCcEEEEEeC----------CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCC-EEEEEE-CCCcE
Q psy13856 146 DVAWAPSWGLSKCMIASCSQ----------DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGD-ILTVSC-GDNSV 213 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s-~D~~v 213 (271)
.+.++| ++..+..... .+.|.++|..+.+. ...+. .......++|+|||+ .++++. .++.|
T Consensus 271 ~~~~s~----d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~v--v~~i~-~g~~p~~i~~s~Dg~~~l~v~~~~~~~V 343 (373)
T 2mad_H 271 QVAYLK----SSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQT--SSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVL 343 (373)
T ss_pred eEEECC----CCCEEEEEeccCCcccccCCCCeEEEEECCCCEE--EEEEE-CCCCcCeEEECCCCCeEEEEEcCCCCeE
Confidence 366777 4565555432 35799999988765 34443 233678999999999 777777 48999
Q ss_pred EEEEeCCCCceeEEEE
Q psy13856 214 SLWKENTDGAWQCITE 229 (271)
Q Consensus 214 ~iw~~~~~~~~~~~~~ 229 (271)
.++|..+. +.+.+
T Consensus 344 ~ViD~~t~---~vv~~ 356 (373)
T 2mad_H 344 HIYDAGAG---DQDQS 356 (373)
T ss_pred EEEECCCC---CEEee
Confidence 99999877 55555
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.39 E-value=1.6e-05 Score=71.63 Aligned_cols=158 Identities=9% Similarity=-0.046 Sum_probs=94.7
Q ss_pred cCCCCCCCEEE-----EccCCCeEEeccc--eeeeccccccccccceEEEEcCCCCeEEEEeCCCc-------------E
Q psy13856 29 ESPLRIGHTLI-----SCDTQAHIGIRST--ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEA-------------A 88 (271)
Q Consensus 29 ~~~~~~g~~l~-----s~s~d~~i~lwd~--~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~-------------i 88 (271)
..++|||++|| .|+.+..|++||+ -..+..+... .....++|+ |++.|+.++.+.. |
T Consensus 134 ~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v 210 (693)
T 3iuj_A 134 LSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKV 210 (693)
T ss_dssp EEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-------CCCCEE
T ss_pred EEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCcccccccccCCCcEE
Confidence 34567999888 4555578999998 2222223222 002578999 9999988887743 5
Q ss_pred EEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecC-CCcceEEEEEccCCCCCCcEEEEEe---
Q psy13856 89 KHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLEN-HSDWVRDVAWAPSWGLSKCMIASCS--- 164 (271)
Q Consensus 89 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~-h~~~v~~v~~~p~~~~~~~~l~s~~--- 164 (271)
++|++ .+.... . ..+..... |...+.++.|+| |+++|+...
T Consensus 211 ~~~~l---gt~~~~--------------------------~--~~v~~~~~~~~~~~~~~~~Sp----Dg~~l~~~~~~~ 255 (693)
T 3iuj_A 211 YFHRL---GTAQED--------------------------D--RLVFGAIPAQHHRYVGATVTE----DDRFLLISAANS 255 (693)
T ss_dssp EEEET---TSCGGG--------------------------C--EEEESCSGGGCCSEEEEEECT----TSCEEEEEEESS
T ss_pred EEEEC---CCCccc--------------------------c--eEEEecCCCCCeEEEEEEEcC----CCCEEEEEEccC
Confidence 55554 211110 0 23333333 455678899999 688774433
Q ss_pred -CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEE-CC---CcEEEEEeCCCCc--eeE
Q psy13856 165 -QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC-GD---NSVSLWKENTDGA--WQC 226 (271)
Q Consensus 165 -~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D---~~v~iw~~~~~~~--~~~ 226 (271)
.++.++++|+.++... ...+..+....... |+++|..|+..+ .| +.|..+++..... |..
T Consensus 256 ~~~~~i~~~d~~~~~~~-~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~ 322 (693)
T 3iuj_A 256 TSGNRLYVKDLSQENAP-LLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRD 322 (693)
T ss_dssp SSCCEEEEEETTSTTCC-CEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEE
T ss_pred CCCcEEEEEECCCCCCc-eEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEE
Confidence 2358999999776311 34455565555555 666665554444 33 5788888876543 544
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=98.39 E-value=0.00042 Score=55.38 Aligned_cols=170 Identities=9% Similarity=-0.021 Sum_probs=100.7
Q ss_pred CCCCCCCEEEEccCCCeEEeccc----eeeeccc-cccccccceEEEEcCCCCeEEEEeCC---------CcEEEEEeec
Q psy13856 30 SPLRIGHTLISCDTQAHIGIRST----ISLLQGS-VYLRRESNKAGALSPKLNRSATSSFH---------EAAKHLGTVQ 95 (271)
Q Consensus 30 ~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h-~~~~~~~i~~~~~s~~~~~l~s~s~d---------~~i~~~d~~~ 95 (271)
.+.++|.++++. ++.|.+||. +..+... .......+.+++++|+|++.++...+ ..-.+|.+.
T Consensus 60 ~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d- 136 (297)
T 3g4e_A 60 ALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLF- 136 (297)
T ss_dssp EEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEEC-
T ss_pred EECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEE-
Confidence 344688865554 468888887 2222211 11111126789999999966654321 234566552
Q ss_pred CCCCceeecc---ce-eeEEEeeccceee------eEEEE-e---eCCceE---EeEEecCCCcceEEEEEccCCCCCCc
Q psy13856 96 SSSPACLQPK---YF-KLTVYSTKLTRIL------ILVRI-C---GGDKWI---EETKLENHSDWVRDVAWAPSWGLSKC 158 (271)
Q Consensus 96 ~~~~~~~~~~---~~-~~~~~~~~~~~l~------~~v~i-~---~~~~~~---~~~~~~~h~~~v~~v~~~p~~~~~~~ 158 (271)
..+...... .. ....++.+++.+. +.|.+ . .++... ....+..+......+++++ +++
T Consensus 137 -~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~----~G~ 211 (297)
T 3g4e_A 137 -PDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDA----EGK 211 (297)
T ss_dssp -TTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBT----TSC
T ss_pred -CCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECC----CCC
Confidence 122222211 22 3344566666443 44554 2 333221 2223333445678899999 688
Q ss_pred EEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEe-cCCCEEEEEEC
Q psy13856 159 MIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWS-LTGDILTVSCG 209 (271)
Q Consensus 159 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~ 209 (271)
+.++....+.|.+||..+++. ...+..+...+++++|. |+++.|+.++.
T Consensus 212 lwva~~~~~~v~~~d~~tG~~--~~~i~~p~~~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 212 LWVACYNGGRVIRLDPVTGKR--LQTVKLPVDKTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp EEEEEETTTEEEEECTTTCCE--EEEEECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred EEEEEcCCCEEEEEcCCCceE--EEEEECCCCCceEEEEeCCCCCEEEEEcC
Confidence 888888889999999987775 45555566789999998 88776665553
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00017 Score=57.11 Aligned_cols=145 Identities=8% Similarity=-0.065 Sum_probs=98.9
Q ss_pred cCCCCCCCEEEEccCCCeEEeccc---eeee--ccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceee
Q psy13856 29 ESPLRIGHTLISCDTQAHIGIRST---ISLL--QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQ 103 (271)
Q Consensus 29 ~~~~~~g~~l~s~s~d~~i~lwd~---~~~~--~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~ 103 (271)
....++|.++++...++.|.+||. +..+ ..+... +.++++.++++..++...++.|..++. . +..
T Consensus 25 i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~----~~~i~~~~~g~l~v~~~~~~~v~~~d~---~-g~~-- 94 (300)
T 2qc5_A 25 ITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAK----VMCLIVSSLGDIWFTENGANKIGKLSK---K-GGF-- 94 (300)
T ss_dssp EEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCC----EEEEEECTTSCEEEEETTTTEEEEECT---T-SCE--
T ss_pred eeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCc----ceeEEECCCCCEEEEecCCCeEEEECC---C-CCe--
Confidence 334468888888877899999987 2211 122234 789999999987777766788888875 2 211
Q ss_pred ccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeee
Q psy13856 104 PKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPF 183 (271)
Q Consensus 104 ~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 183 (271)
. ...+......+.++++++ ++.++++...++.|..+|.. +... ..
T Consensus 95 ----------------------------~-~~~~~~~~~~~~~i~~~~----~g~l~v~~~~~~~i~~~~~~-g~~~-~~ 139 (300)
T 2qc5_A 95 ----------------------------T-EYPLPQPDSGPYGITEGL----NGDIWFTQLNGDRIGKLTAD-GTIY-EY 139 (300)
T ss_dssp ----------------------------E-EEECSSTTCCEEEEEECS----TTCEEEEETTTTEEEEECTT-SCEE-EE
T ss_pred ----------------------------E-EecCCCCCCCCccceECC----CCCEEEEccCCCeEEEECCC-CCEE-Ec
Confidence 1 111122335678999998 58888887778899999987 4431 12
Q ss_pred eeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEe
Q psy13856 184 IMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 184 ~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~ 218 (271)
.+......+..+++.++|.+.++...++.|..++.
T Consensus 140 ~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~ 174 (300)
T 2qc5_A 140 DLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN 174 (300)
T ss_dssp ECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT
T ss_pred cCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC
Confidence 22334457899999999997776666788988887
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.30 E-value=4.7e-05 Score=63.21 Aligned_cols=60 Identities=10% Similarity=0.152 Sum_probs=43.5
Q ss_pred CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCC-EEEEEE-CCCcEEEEEeCCCCceeEEEEecc
Q psy13856 167 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGD-ILTVSC-GDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s-~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
+.|.+.|..+.+. ...+.. ...++.+++++|++ .|+++. .++.|.++|..++ +.+.+++.
T Consensus 311 ~~V~viD~~t~kv--~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~---k~~~~i~~ 372 (386)
T 3sjl_D 311 RFVVVLDAKTGER--LAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG---EELRSVNQ 372 (386)
T ss_dssp EEEEEEETTTCCE--EEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTC---CEEEEECC
T ss_pred CEEEEEECCCCeE--EEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCC---cEEEEecC
Confidence 5789999988775 333221 23688999999986 666654 4899999999887 56666644
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=0.00052 Score=55.68 Aligned_cols=168 Identities=10% Similarity=-0.058 Sum_probs=101.9
Q ss_pred CCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-----
Q psy13856 35 GHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK----- 105 (271)
Q Consensus 35 g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~----- 105 (271)
+.++++...++.|..||. ...+. .... +.+++|+++++++++. .+ .|.+||. .++......
T Consensus 61 ~~l~~~d~~~~~i~~~d~~~~~~~~~~-~~~~----v~~i~~~~dg~l~v~~-~~-gl~~~d~---~~g~~~~~~~~~~~ 130 (326)
T 2ghs_A 61 GTAWWFNILERELHELHLASGRKTVHA-LPFM----GSALAKISDSKQLIAS-DD-GLFLRDT---ATGVLTLHAELESD 130 (326)
T ss_dssp TEEEEEEGGGTEEEEEETTTTEEEEEE-CSSC----EEEEEEEETTEEEEEE-TT-EEEEEET---TTCCEEEEECSSTT
T ss_pred CEEEEEECCCCEEEEEECCCCcEEEEE-CCCc----ceEEEEeCCCeEEEEE-CC-CEEEEEC---CCCcEEEEeeCCCC
Confidence 557777777899999987 22222 2344 8899999999877654 44 4778886 444432211
Q ss_pred ----ceeeEEEeeccceeeeE---------EEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEE-EEEeCCCeE
Q psy13856 106 ----YFKLTVYSTKLTRILIL---------VRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMI-ASCSQDRKV 169 (271)
Q Consensus 106 ----~~~~~~~~~~~~~l~~~---------v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l-~s~~~dg~i 169 (271)
......+..+++.+++. ..| ..++. . ..+..+......++|+| +++.+ ++.+.++.|
T Consensus 131 ~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~~g~--~-~~~~~~~~~~~~i~~s~----dg~~lyv~~~~~~~I 203 (326)
T 2ghs_A 131 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGK--V-TKLFADISIPNSICFSP----DGTTGYFVDTKVNRL 203 (326)
T ss_dssp CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTE--E-EEEEEEESSEEEEEECT----TSCEEEEEETTTCEE
T ss_pred CCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEeCCc--E-EEeeCCCcccCCeEEcC----CCCEEEEEECCCCEE
Confidence 11223344445554421 223 22442 2 22222334567899999 67655 455567899
Q ss_pred EEEEcC--CC-ceee---eeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 170 IIWTSN--DY-VTWT---PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 170 ~iwd~~--~~-~~~~---~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
.+|+.. ++ .... ...+.........++++++|.+.++...++.|..|+.+
T Consensus 204 ~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 204 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred EEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 999986 44 2110 11222334567889999999988877777889999873
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.24 E-value=6.3e-05 Score=63.44 Aligned_cols=74 Identities=11% Similarity=0.126 Sum_probs=53.6
Q ss_pred EEEccCCCCCCcEEEEEe----------CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCC-EEEEEE-CCCcEE
Q psy13856 147 VAWAPSWGLSKCMIASCS----------QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGD-ILTVSC-GDNSVS 214 (271)
Q Consensus 147 v~~~p~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s-~D~~v~ 214 (271)
+.++| ++..+.... .++.|.+.|..+.+. ...+.. ....+.+.|+|+|+ .++++. .++.|.
T Consensus 324 va~s~----dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kv--v~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~Vs 396 (426)
T 3c75_H 324 TAYHR----QSDRIYLLVDQRDEWKHKAASRFVVVLNAETGER--INKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLH 396 (426)
T ss_dssp EEEEG----GGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--EEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred eEEcC----CCCEEEEEecccccccccCCCCEEEEEECCCCeE--EEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence 67888 455544432 135799999998775 333331 22578999999998 888888 489999
Q ss_pred EEEeCCCCceeEEEEe
Q psy13856 215 LWKENTDGAWQCITEM 230 (271)
Q Consensus 215 iw~~~~~~~~~~~~~~ 230 (271)
++|..+. +.+.++
T Consensus 397 VID~~t~---kvv~tI 409 (426)
T 3c75_H 397 IYDAATG---EELRSV 409 (426)
T ss_dssp EEETTTC---CEEEEE
T ss_pred EEECCCC---CEEEEe
Confidence 9999877 666665
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00013 Score=65.59 Aligned_cols=186 Identities=7% Similarity=-0.116 Sum_probs=101.8
Q ss_pred ccCCCCCCCEEEEccCCC-------------eEEeccc-------eeeec--c-ccccccccceEEEEcCCCCeEEEEeC
Q psy13856 28 TESPLRIGHTLISCDTQA-------------HIGIRST-------ISLLQ--G-SVYLRRESNKAGALSPKLNRSATSSF 84 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d~-------------~i~lwd~-------~~~~~--~-h~~~~~~~i~~~~~s~~~~~l~s~s~ 84 (271)
..... ||+.|+.++.|. .|.+|++ ...+. . |... ..++.|+|||++|+....
T Consensus 179 ~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~----~~~~~~SpDg~~l~~~~~ 253 (693)
T 3iuj_A 179 GISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHR----YVGATVTEDDRFLLISAA 253 (693)
T ss_dssp CCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCS----EEEEEECTTSCEEEEEEE
T ss_pred cEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeE----EEEEEEcCCCCEEEEEEc
Confidence 44455 888888887764 3888887 11222 2 3334 568899999997754432
Q ss_pred ----CCcEEEEEeecCC-CCceeecc-ceeeEEEeeccceee---------eEEEE--eeCCceEEeEEecCCCcceEEE
Q psy13856 85 ----HEAAKHLGTVQSS-SPACLQPK-YFKLTVYSTKLTRIL---------ILVRI--CGGDKWIEETKLENHSDWVRDV 147 (271)
Q Consensus 85 ----d~~i~~~d~~~~~-~~~~~~~~-~~~~~~~~~~~~~l~---------~~v~i--~~~~~~~~~~~~~~h~~~v~~v 147 (271)
+..++++++.++. ....+... ......++.++..+. ..|.. ...+.....+.+..|...+.
T Consensus 254 ~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-- 331 (693)
T 3iuj_A 254 NSTSGNRLYVKDLSQENAPLLTVQGDLDADVSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL-- 331 (693)
T ss_dssp SSSSCCEEEEEETTSTTCCCEEEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--
T ss_pred cCCCCcEEEEEECCCCCCceEEEeCCCCceEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--
Confidence 2478888873211 11111111 111222444444443 22333 12221111234555655554
Q ss_pred EEccCCCCCCcEEEEEeC-CC--eEEEEEcCCCceeeeeee-ccCCCCeEEEEEecCCCEEEEEECC----CcEEEEEeC
Q psy13856 148 AWAPSWGLSKCMIASCSQ-DR--KVIIWTSNDYVTWTPFIM-NTFDDVVWNVSWSLTGDILTVSCGD----NSVSLWKEN 219 (271)
Q Consensus 148 ~~~p~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~-~~h~~~v~~v~~~~~g~~l~s~s~D----~~v~iw~~~ 219 (271)
.|+| ++..|+.... ++ .|++|++.... ...+ ....+.+..+.+++++..++....+ ++++.||+.
T Consensus 332 ~~s~----~g~~lv~~~~~~g~~~l~~~d~~g~~---~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~ 404 (693)
T 3iuj_A 332 TVHS----GSGYLFAEYMVDATARVEQFDYEGKR---VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPK 404 (693)
T ss_dssp EEEE----ETTEEEEEEEETTEEEEEEECTTSCE---EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEE----ECCEEEEEEEECCeeEEEEEECCCCe---eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECC
Confidence 7888 4666655554 44 68888887543 2222 2344567778888887766655444 789999987
Q ss_pred CCCceeEEE
Q psy13856 220 TDGAWQCIT 228 (271)
Q Consensus 220 ~~~~~~~~~ 228 (271)
++ ....+.
T Consensus 405 ~g-~~~~l~ 412 (693)
T 3iuj_A 405 SG-AISLYR 412 (693)
T ss_dssp TC-CEEEEE
T ss_pred CC-eEEEEE
Confidence 54 333333
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00027 Score=58.71 Aligned_cols=151 Identities=10% Similarity=0.044 Sum_probs=92.9
Q ss_pred ccCCCCCCCEEEEccC-----CCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEe----------CCCc
Q psy13856 28 TESPLRIGHTLISCDT-----QAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSS----------FHEA 87 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~-----d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s----------~d~~ 87 (271)
...|.|+++.+..... ++.|.+.|. +..+..-.. . .++++|||++++.++ .++.
T Consensus 37 ~~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~-----P-~va~spDG~~lyVan~~~~r~~~G~~~~~ 110 (386)
T 3sjl_D 37 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFL-----P-NPVVADDGSFIAHASTVFSRIARGERTDY 110 (386)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSS-----C-EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred eeccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCC-----C-cEEECCCCCEEEEEcccccccccCCCCCE
Confidence 3567789987766654 679999998 333332222 2 499999999887765 3677
Q ss_pred EEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC--
Q psy13856 88 AKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ-- 165 (271)
Q Consensus 88 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~-- 165 (271)
|.+||. .+.+..... .+ ..+ . .. .....-..+.++| |++++..+..
T Consensus 111 VsviD~---~t~~v~~~I------------------~v-~~g--~---r~-~~g~~P~~~a~sp----DGk~lyVan~~~ 158 (386)
T 3sjl_D 111 VEVFDP---VTLLPTADI------------------EL-PDA--P---RF-LVGTYPWMTSLTP----DGKTLLFYQFSP 158 (386)
T ss_dssp EEEECT---TTCCEEEEE------------------EE-TTC--C---CC-CBSCCGGGEEECT----TSSEEEEEECSS
T ss_pred EEEEEC---CCCeEEEEE------------------EC-CCc--c---cc-ccCCCCceEEEcC----CCCEEEEEEcCC
Confidence 889997 444332210 00 000 0 00 0112345799999 7888877763
Q ss_pred CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 166 DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
++.|.++|..+.+. ...+..- +. ...+....+.+++.+.||++.+.++...
T Consensus 159 ~~~VsVID~~t~~v--v~tI~v~-g~--~~~~P~g~~~~~~~~~DG~~~~v~~~~~ 209 (386)
T 3sjl_D 159 APAVGVVDLEGKAF--KRMLDVP-DC--YHIFPTAPDTFFMHCRDGSLAKVAFGTE 209 (386)
T ss_dssp SCEEEEEETTTTEE--EEEEECC-SE--EEEEEEETTEEEEEETTSCEEEEECCSS
T ss_pred CCeEEEEECCCCcE--EEEEECC-Cc--ceeecCCCceeEEECCCCCEEEEECCCC
Confidence 68999999999775 3333221 11 1223334456667778888888887653
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00013 Score=59.66 Aligned_cols=152 Identities=10% Similarity=0.023 Sum_probs=87.0
Q ss_pred CCCCCEEEEcc--CCCeEEeccc----eeeec---cccccccccceEEEEcCCCCeEEEEeC-----CCcEEEEEeecCC
Q psy13856 32 LRIGHTLISCD--TQAHIGIRST----ISLLQ---GSVYLRRESNKAGALSPKLNRSATSSF-----HEAAKHLGTVQSS 97 (271)
Q Consensus 32 ~~~g~~l~s~s--~d~~i~lwd~----~~~~~---~h~~~~~~~i~~~~~s~~~~~l~s~s~-----d~~i~~~d~~~~~ 97 (271)
.++|+++++.. .++.++||.+ +..+. .........+.++++++++++.++-.. +..|.+||. .
T Consensus 25 ~~~g~~~v~~~~~~~~~~~l~~~~~g~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~---~ 101 (343)
T 2qe8_A 25 TPDGRLFLSLHQFYQPEMQVAELTQDGLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDT---L 101 (343)
T ss_dssp CTTSCEEEEECGGGCCSCSEEEEETTEEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEET---T
T ss_pred CCCCCEEEEeCCCCCCceEEEEECCCCeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEEC---C
Confidence 35888888853 2343555554 11111 000011223889999999876555433 567888887 4
Q ss_pred CCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe---CCCeEEEEEc
Q psy13856 98 SPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS---QDRKVIIWTS 174 (271)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~---~dg~i~iwd~ 174 (271)
+++.+.....+ .....+......++++|. ++..+++.. .++.|.+||.
T Consensus 102 tg~~~~~~~~~--------------------------~~~~~~~~~~~~v~vd~~---~g~~yvtd~~~~~~~~i~v~d~ 152 (343)
T 2qe8_A 102 NNQLSRVIYLP--------------------------PPITLSNSFVNDLAVDLI---HNFVYISDPAPDDKAALIRVDL 152 (343)
T ss_dssp TTEEEEEEECC--------------------------TTTSCTTCCCCEEEEETT---TTEEEEEECCSGGGCEEEEEET
T ss_pred CCeEEEEEECC--------------------------hhhcccccccceEEEecC---CCEEEEEcCccCCCCeEEEEEC
Confidence 44322210000 000123345678999984 355556655 6789999999
Q ss_pred CCCceeeeeeeccC-----------------------------CCCeEEEEEecCCCEEEEEECCCcEEEEEe
Q psy13856 175 NDYVTWTPFIMNTF-----------------------------DDVVWNVSWSLTGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 175 ~~~~~~~~~~~~~h-----------------------------~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~ 218 (271)
.+++. ...+.+| ...++.++|+|+|+.|+.+..++. ++|.+
T Consensus 153 ~~g~~--~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~-~l~~~ 222 (343)
T 2qe8_A 153 QTGLA--ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHST-SMYRI 222 (343)
T ss_dssp TTCCE--EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCS-EEEEE
T ss_pred CCCCE--EEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCC-eEEEE
Confidence 87654 2222221 123688999999998888877653 44444
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.03 E-value=0.00083 Score=54.49 Aligned_cols=108 Identities=6% Similarity=-0.139 Sum_probs=69.8
Q ss_pred ceEEEEcCCCCeEEEE-eCCCcEEEEEeecCCCC-ceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcce
Q psy13856 67 NKAGALSPKLNRSATS-SFHEAAKHLGTVQSSSP-ACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWV 144 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~-s~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v 144 (271)
...++|+|+++.++.+ +.++.|.+|+... .++ .... . .....+.......
T Consensus 181 ~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~-~~Gl~~~~-------------------------~--~~~~~~~~~~~~p 232 (326)
T 2ghs_A 181 PNSICFSPDGTTGYFVDTKVNRLMRVPLDA-RTGLPTGK-------------------------A--EVFIDSTGIKGGM 232 (326)
T ss_dssp EEEEEECTTSCEEEEEETTTCEEEEEEBCT-TTCCBSSC-------------------------C--EEEEECTTSSSEE
T ss_pred cCCeEEcCCCCEEEEEECCCCEEEEEEccc-ccCCcccC-------------------------c--eEEEECCCCCCCC
Confidence 5689999999876544 4568888888620 022 1100 0 1122222333456
Q ss_pred EEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEe-cCCCEEEEEEC
Q psy13856 145 RDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWS-LTGDILTVSCG 209 (271)
Q Consensus 145 ~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~s~ 209 (271)
..+++++ ++.++++...++.|.+||. +++. ...+..+...+.+++|. +++..|+.++.
T Consensus 233 ~gi~~d~----~G~lwva~~~~~~v~~~d~-~g~~--~~~i~~~~~~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 233 DGSVCDA----EGHIWNARWGEGAVDRYDT-DGNH--IARYEVPGKQTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp EEEEECT----TSCEEEEEETTTEEEEECT-TCCE--EEEEECSCSBEEEEEEESTTSCEEEEEEB
T ss_pred CeeEECC----CCCEEEEEeCCCEEEEECC-CCCE--EEEEECCCCCcEEEEEecCCCCEEEEEec
Confidence 7899998 5888887777789999998 4443 44455555679999998 88876655543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00082 Score=56.60 Aligned_cols=161 Identities=10% Similarity=-0.085 Sum_probs=98.6
Q ss_pred CCCCCCCEEEEccCC------CeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEe---------------
Q psy13856 30 SPLRIGHTLISCDTQ------AHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSS--------------- 83 (271)
Q Consensus 30 ~~~~~g~~l~s~s~d------~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s--------------- 83 (271)
.+.|+| +++++..+ +.|.+.|. +..+...... ..--+.+.|+|+++.+++..
T Consensus 144 ~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~-~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~ 221 (462)
T 2ece_A 144 HCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGD-QYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEH 221 (462)
T ss_dssp EECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTT-CCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTT
T ss_pred eECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCC-ccccceEEECCCCCEEEEccCcCccccccccchhh
Confidence 445788 87777766 78999997 3344311111 00135688999999888885
Q ss_pred ----CCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecC--CCcceEEEEE--ccCCCC
Q psy13856 84 ----FHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLEN--HSDWVRDVAW--APSWGL 155 (271)
Q Consensus 84 ----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~--h~~~v~~v~~--~p~~~~ 155 (271)
.+.+|.+||. .+++. +.++.- .......+.| +|
T Consensus 222 ~~~~~~d~V~v~D~---~~~k~--------------------------------~~tI~vg~~g~~P~~i~f~~~P---- 262 (462)
T 2ece_A 222 LKDRYGNRIHFWDL---RKRKR--------------------------------IHSLTLGEENRMALELRPLHDP---- 262 (462)
T ss_dssp HHHHSCCEEEEEET---TTTEE--------------------------------EEEEESCTTEEEEEEEEECSST----
T ss_pred hhhccCCEEEEEEC---CCCcE--------------------------------eeEEecCCCCCccceeEeeECC----
Confidence 3678889997 33222 222221 1122334545 88
Q ss_pred CCcEEEEEe------CCCeEEEEEcCCCceeeeeee--ccC----------------CCCeEEEEEecCCCEEEEEEC-C
Q psy13856 156 SKCMIASCS------QDRKVIIWTSNDYVTWTPFIM--NTF----------------DDVVWNVSWSLTGDILTVSCG-D 210 (271)
Q Consensus 156 ~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~--~~h----------------~~~v~~v~~~~~g~~l~s~s~-D 210 (271)
++.++..++ .+++|.+|....+.....+.+ ... ......+.+++||++|.++.. .
T Consensus 263 dg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~ 342 (462)
T 2ece_A 263 TKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGI 342 (462)
T ss_dssp TCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTT
T ss_pred CCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCC
Confidence 577666655 567888777655321111111 110 234678999999999988876 6
Q ss_pred CcEEEEEeCCCCceeEEEEec
Q psy13856 211 NSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 211 ~~v~iw~~~~~~~~~~~~~~~ 231 (271)
+.|.+||+...+..+.+..+.
T Consensus 343 d~VavfdV~d~~~~~lv~~I~ 363 (462)
T 2ece_A 343 GEVRQYDISNPFKPVLTGKVK 363 (462)
T ss_dssp TEEEEEECSSTTSCEEEEEEE
T ss_pred CEEEEEEecCCCCcEEEEEEE
Confidence 899999997555556666553
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=97.98 E-value=0.00072 Score=54.20 Aligned_cols=133 Identities=11% Similarity=-0.011 Sum_probs=79.9
Q ss_pred CCCCCEEEE----ccC-------------CCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCC-----
Q psy13856 32 LRIGHTLIS----CDT-------------QAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH----- 85 (271)
Q Consensus 32 ~~~g~~l~s----~s~-------------d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d----- 85 (271)
.++|.++++ |.. .+.|..+|. +..+. .... ...++|+||++.|+.+...
T Consensus 139 d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~----p~gl~~spdg~~lyv~~~~~~~~~ 213 (305)
T 3dr2_A 139 ARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDH----PNGLAFSPDEQTLYVSQTPEQGHG 213 (305)
T ss_dssp CTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESS----EEEEEECTTSSEEEEEECCC---C
T ss_pred CCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCC----CcceEEcCCCCEEEEEecCCcCCC
Confidence 468888886 432 245666665 22222 2333 5789999999977777654
Q ss_pred -CcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe
Q psy13856 86 -EAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS 164 (271)
Q Consensus 86 -~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~ 164 (271)
+.|+.|+.. ... +.. . .... .........+++++ +|++.++.
T Consensus 214 ~~~i~~~~~~---~~~-l~~------------------------~--~~~~--~~~~~~pdgi~~d~----~G~lwv~~- 256 (305)
T 3dr2_A 214 SVEITAFAWR---DGA-LHD------------------------R--RHFA--SVPDGLPDGFCVDR----GGWLWSSS- 256 (305)
T ss_dssp CCEEEEEEEE---TTE-EEE------------------------E--EEEE--CCSSSCCCSEEECT----TSCEEECC-
T ss_pred CCEEEEEEec---CCC-ccC------------------------C--eEEE--ECCCCCCCeEEECC----CCCEEEec-
Confidence 678888872 111 100 0 1111 11223345688898 57755554
Q ss_pred CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCC
Q psy13856 165 QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDN 211 (271)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~ 211 (271)
.+ .|.+|+.. ++. ...+.... .+.+++|++++..|..++.++
T Consensus 257 ~~-gv~~~~~~-g~~--~~~~~~~~-~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 257 GT-GVCVFDSD-GQL--LGHIPTPG-TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp SS-EEEEECTT-SCE--EEEEECSS-CCCEEEECTTSCEEEEEETTE
T ss_pred CC-cEEEECCC-CCE--EEEEECCC-ceeEEEEeCCCCEEEEEcCCe
Confidence 44 49999984 343 33343333 588899999998888887664
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=97.95 E-value=0.00038 Score=57.58 Aligned_cols=78 Identities=12% Similarity=-0.053 Sum_probs=54.3
Q ss_pred EEEccCCCCCCcEEEEE-e---C-----CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCC-EEEEEE-CCCcEEE
Q psy13856 147 VAWAPSWGLSKCMIASC-S---Q-----DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGD-ILTVSC-GDNSVSL 215 (271)
Q Consensus 147 v~~~p~~~~~~~~l~s~-~---~-----dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~l~s~s-~D~~v~i 215 (271)
+.++| |+..+..+ . . ++.+.++|..+.+. ...+... .....++|+|||+ .+++.. .++.|.+
T Consensus 269 v~~s~----dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~v--v~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsV 341 (368)
T 1mda_H 269 VAKLK----NTDGIMILTVEHSRSCLAAAENTSSVTASVGQT--SGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDI 341 (368)
T ss_dssp EEEET----TTTEEEEEEEECSSCTTSCEEEEEEEESSSCCE--EECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred eEEcC----CCCEEEEEeccccCcccccCCCEEEEECCCCeE--EEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEE
Confidence 67888 56655543 3 2 23566999998775 3333322 2578999999997 566666 5999999
Q ss_pred EEeCCCCceeEEEEecccc
Q psy13856 216 WKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 216 w~~~~~~~~~~~~~~~~~~ 234 (271)
+|..+. +.+.++....
T Consensus 342 ID~~t~---kvv~~I~vg~ 357 (368)
T 1mda_H 342 YDAASD---QDQSSVELDK 357 (368)
T ss_dssp EESSSC---EEEEECCCCS
T ss_pred EECCCC---cEEEEEECCC
Confidence 999877 7777776543
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=97.83 E-value=0.0031 Score=52.22 Aligned_cols=146 Identities=7% Similarity=-0.012 Sum_probs=87.7
Q ss_pred CCCCCCCEEEEccC--CC---eEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEe----------CCCcEE
Q psy13856 30 SPLRIGHTLISCDT--QA---HIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSS----------FHEAAK 89 (271)
Q Consensus 30 ~~~~~g~~l~s~s~--d~---~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s----------~d~~i~ 89 (271)
.|.++++++..... .. +|.++|. +..+.. ... . .++|+||+++++.+. .++.|.
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~-g~~----p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~ 100 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNG-GFL----P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVE 100 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecC-CCC----C-CeEECCCCCEEEEEeccccccccCCCCCeEE
Confidence 44478886666653 33 7899997 222221 112 3 899999999988875 367788
Q ss_pred EEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC--CC
Q psy13856 90 HLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ--DR 167 (271)
Q Consensus 90 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~--dg 167 (271)
++|. .+.+..... .+.... ... +...-..+.|+| |+++++.+.. ++
T Consensus 101 viD~---~t~~~~~~i------------------~~~~~~------~~~-~g~~p~~~~~sp----DG~~l~v~n~~~~~ 148 (373)
T 2mad_H 101 VFDP---VTFLPIADI------------------ELPDAP------RFD-VGPYSWMNANTP----NNADLLFFQFAAGP 148 (373)
T ss_pred EEEC---CCCcEEEEE------------------ECCCcc------ccc-cCCCccceEECC----CCCEEEEEecCCCC
Confidence 8987 333322210 000000 000 112345799999 7998888774 57
Q ss_pred eEEEEEcCCCceeeeee-eccCCCCeEEEEEecCC-CEEEEEECCCcEEEEEeCCC
Q psy13856 168 KVIIWTSNDYVTWTPFI-MNTFDDVVWNVSWSLTG-DILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 168 ~i~iwd~~~~~~~~~~~-~~~h~~~v~~v~~~~~g-~~l~s~s~D~~v~iw~~~~~ 221 (271)
.|.++| .+++. ... +. ... ++.+.|++ ..+++.+.||++.+++. ++
T Consensus 149 ~v~viD-~t~~~--~~~~i~-~~~---~~~~~~~~~~~~~~~~~dg~~~~vd~-~g 196 (373)
T 2mad_H 149 AVGLVV-QGGSS--DDQLLS-SPT---CYHIHPGAPSTFYLLCAQGGLAKTDH-AG 196 (373)
T ss_pred eEEEEE-CCCCE--EeEEcC-CCc---eEEEEeCCCceEEEEcCCCCEEEEEC-CC
Confidence 899999 88764 333 22 222 24455554 45566667888888888 54
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0031 Score=53.17 Aligned_cols=152 Identities=13% Similarity=0.066 Sum_probs=96.8
Q ss_pred CCCC-EEEEccCCCeEEeccc---------eeeec------ccc-ccccccceEEEEcCCCCeEEEEeCC------CcEE
Q psy13856 33 RIGH-TLISCDTQAHIGIRST---------ISLLQ------GSV-YLRRESNKAGALSPKLNRSATSSFH------EAAK 89 (271)
Q Consensus 33 ~~g~-~l~s~s~d~~i~lwd~---------~~~~~------~h~-~~~~~~i~~~~~s~~~~~l~s~s~d------~~i~ 89 (271)
.+++ ++++|-.++.|.++|+ .+++. ... .. ...+..+|+| .++++..+ +.+.
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~----Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~ 167 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSR----LHTVHCGPDA-IYISALGNEEGEGPGGIL 167 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEE----EEEEEECSSC-EEEEEEEETTSCSCCEEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCc----ccceeECCCe-EEEEcCCCcCCCCCCeEE
Confidence 5565 5677888899999998 22221 001 12 3467788999 66666555 5676
Q ss_pred EEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecC--CC-cceEEEEEccCCCCCCcEEEEEe--
Q psy13856 90 HLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLEN--HS-DWVRDVAWAPSWGLSKCMIASCS-- 164 (271)
Q Consensus 90 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~--h~-~~v~~v~~~p~~~~~~~~l~s~~-- 164 (271)
++|. .+.+. +..... .. ..-..+.|+| +++.+++..
T Consensus 168 vlD~---~T~~v--------------------------------~~~~~~~~~~~~~~Yd~~~~p----~~~~mvsS~wg 208 (462)
T 2ece_A 168 MLDH---YSFEP--------------------------------LGKWEIDRGDQYLAYDFWWNL----PNEVLVSSEWA 208 (462)
T ss_dssp EECT---TTCCE--------------------------------EEECCSBCTTCCCCCCEEEET----TTTEEEECBCC
T ss_pred EEEC---CCCeE--------------------------------EEEEccCCCCccccceEEECC----CCCEEEEccCc
Confidence 7776 33332 222221 11 2234688899 688888774
Q ss_pred -----------------CCCeEEEEEcCCCceeeeeeecc--CCCCeEEEEE--ecCCCEEEEEE------CCCcEEEEE
Q psy13856 165 -----------------QDRKVIIWTSNDYVTWTPFIMNT--FDDVVWNVSW--SLTGDILTVSC------GDNSVSLWK 217 (271)
Q Consensus 165 -----------------~dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~v~~--~~~g~~l~s~s------~D~~v~iw~ 217 (271)
.+.+|.+||+.+.+. ...+.. .......+.| +|+++++.+++ .+++|.+|.
T Consensus 209 ~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~--~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~ 286 (462)
T 2ece_A 209 VPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR--IHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWF 286 (462)
T ss_dssp CHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE--EEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEE
T ss_pred CccccccccchhhhhhccCCEEEEEECCCCcE--eeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEE
Confidence 478999999998654 333332 1233455655 99999888777 467899988
Q ss_pred eCCCCceeEEEEec
Q psy13856 218 ENTDGAWQCITEMG 231 (271)
Q Consensus 218 ~~~~~~~~~~~~~~ 231 (271)
.+. +.|+..+.+.
T Consensus 287 ~d~-g~~~~~~vId 299 (462)
T 2ece_A 287 YED-GKWNAEKVIE 299 (462)
T ss_dssp EET-TEEEEEEEEE
T ss_pred ecC-CceeEEEEEe
Confidence 875 7887777653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0053 Score=48.20 Aligned_cols=150 Identities=3% Similarity=-0.059 Sum_probs=89.3
Q ss_pred ceEEEEcCCCCeEEEEeC--CCcEEEEEeecCCCCceeeccc-----eeeEEEeeccceee------eEEEEeeCCceEE
Q psy13856 67 NKAGALSPKLNRSATSSF--HEAAKHLGTVQSSSPACLQPKY-----FKLTVYSTKLTRIL------ILVRICGGDKWIE 133 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~--d~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~------~~v~i~~~~~~~~ 133 (271)
...++|++++...++.+. ++.|+++|. .+++.+.... +.. -.+..++.+. +.+.+.+....+.
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~---~tg~v~~~i~l~~~~fge-Gi~~~g~~lyv~t~~~~~v~viD~~t~~v 98 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYGRSSVRQVAL---QTGKVENIHKMDDSYFGE-GLTLLNEKLYQVVWLKNIGFIYDRRTLSN 98 (266)
T ss_dssp EEEEEECSTTEEEEEECSTTTCEEEEEET---TTCCEEEEEECCTTCCEE-EEEEETTEEEEEETTCSEEEEEETTTTEE
T ss_pred cccEEEeCCCeEEEECCCCCCCEEEEEEC---CCCCEEEEEecCCCcceE-EEEEeCCEEEEEEecCCEEEEEECCCCcE
Confidence 468999998755555443 679999998 7777776542 121 2223343333 5566522223356
Q ss_pred eEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeec--cCC---CCeEEEEEecCCCEEEEEE
Q psy13856 134 ETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMN--TFD---DVVWNVSWSLTGDILTVSC 208 (271)
Q Consensus 134 ~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~h~---~~v~~v~~~~~g~~l~s~s 208 (271)
+..+.--...-+. +++ |+..+..+..++.|.++|..+.+. ...+. ... ..++.+.|. +|...+...
T Consensus 99 ~~~i~~g~~~g~g--lt~----Dg~~l~vs~gs~~l~viD~~t~~v--~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~ 169 (266)
T 2iwa_A 99 IKNFTHQMKDGWG--LAT----DGKILYGSDGTSILYEIDPHTFKL--IKKHNVKYNGHRVIRLNELEYI-NGEVWANIW 169 (266)
T ss_dssp EEEEECCSSSCCE--EEE----CSSSEEEECSSSEEEEECTTTCCE--EEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred EEEEECCCCCeEE--EEE----CCCEEEEECCCCeEEEEECCCCcE--EEEEEECCCCcccccceeEEEE-CCEEEEecC
Confidence 6666422122233 444 344444445688999999988664 22222 121 246788888 776555555
Q ss_pred CCCcEEEEEeCCCCceeEEEEecc
Q psy13856 209 GDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 209 ~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
.++.|.+.|+.++ +.+.++.-
T Consensus 170 ~~~~V~vID~~tg---~V~~~I~~ 190 (266)
T 2iwa_A 170 QTDCIARISAKDG---TLLGWILL 190 (266)
T ss_dssp TSSEEEEEETTTC---CEEEEEEC
T ss_pred CCCeEEEEECCCC---cEEEEEEC
Confidence 6789999999887 56666654
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=97.58 E-value=0.01 Score=53.27 Aligned_cols=59 Identities=8% Similarity=0.160 Sum_probs=42.6
Q ss_pred CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEec
Q psy13856 167 RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 167 g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
+.|..||..+++. .-.. .+..+++...+...+..++.++.|+.+++||..++ +.+.++.
T Consensus 457 g~l~A~D~~tG~~--~W~~-~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG---~~lw~~~ 515 (677)
T 1kb0_A 457 GRLLAWDPVAQKA--AWSV-EHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATG---EKLWEAP 515 (677)
T ss_dssp EEEEEEETTTTEE--EEEE-EESSSCCCCEEEETTTEEEEECTTSEEEEEETTTC---CEEEEEE
T ss_pred cEEEEEeCCCCcE--Eeec-CCCCCCcCcceEeCCCEEEEECCCCcEEEEECCCC---ceeeeee
Confidence 7899999998874 2222 23344555566778888999999999999999988 4444443
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0069 Score=49.34 Aligned_cols=122 Identities=8% Similarity=-0.023 Sum_probs=76.1
Q ss_pred ceEEEEcCCCCeEEEEe--CCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcce
Q psy13856 67 NKAGALSPKLNRSATSS--FHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWV 144 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v 144 (271)
+..++++|+|+.+++.. .++.+++|.+. .++... ++. . . ....+|-..+
T Consensus 19 p~~va~~~~g~~~v~~~~~~~~~~~l~~~~---~g~~~~---~p~-------------------~--~--~~~~~~~~~p 69 (343)
T 2qe8_A 19 PGNITLTPDGRLFLSLHQFYQPEMQVAELT---QDGLIP---FPP-------------------Q--S--GNAIITFDTV 69 (343)
T ss_dssp EEEEEECTTSCEEEEECGGGCCSCSEEEEE---TTEEEE---SCC-------------------C--C--SSCCCCCSCE
T ss_pred cceEEECCCCCEEEEeCCCCCCceEEEEEC---CCCeec---CCC-------------------c--c--cCcccceeEe
Confidence 78999999999888864 23435566652 121110 000 0 0 0112456788
Q ss_pred EEEEEccCCCCCCcEEEEEeC-----CCeEEEEEcCCCceeeeeeec----cCCCCeEEEEEecCC-CEEEEEE---CCC
Q psy13856 145 RDVAWAPSWGLSKCMIASCSQ-----DRKVIIWTSNDYVTWTPFIMN----TFDDVVWNVSWSLTG-DILTVSC---GDN 211 (271)
Q Consensus 145 ~~v~~~p~~~~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~~----~h~~~v~~v~~~~~g-~~l~s~s---~D~ 211 (271)
.+++++| +++++++-.. +..|.+||..+++......+. .+...+..+++++++ ..+++.. .++
T Consensus 70 ~gv~~d~----~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~ 145 (343)
T 2qe8_A 70 LGIKSDG----NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKA 145 (343)
T ss_dssp EEEEECS----SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGC
T ss_pred eEEEEcC----CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCC
Confidence 9999999 5776665543 578999999887642111221 123456899999864 4445554 578
Q ss_pred cEEEEEeCCC
Q psy13856 212 SVSLWKENTD 221 (271)
Q Consensus 212 ~v~iw~~~~~ 221 (271)
.|.+||+.++
T Consensus 146 ~i~v~d~~~g 155 (343)
T 2qe8_A 146 ALIRVDLQTG 155 (343)
T ss_dssp EEEEEETTTC
T ss_pred eEEEEECCCC
Confidence 9999999866
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.021 Score=44.57 Aligned_cols=148 Identities=10% Similarity=0.024 Sum_probs=87.8
Q ss_pred CCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEE-EeCCCcEEEEEeecCCCCceeeccce
Q psy13856 34 IGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSAT-SSFHEAAKHLGTVQSSSPACLQPKYF 107 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s-~s~d~~i~~~d~~~~~~~~~~~~~~~ 107 (271)
++.++++.+.+|.|+.+|+ +..+ -... .+.....+++..|.. .-.++.+.++|. .+.+
T Consensus 64 ~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~~----~FgeGit~~g~~Ly~ltw~~~~v~V~D~---~Tl~------- 127 (268)
T 3nok_A 64 QGHFFESTGHQGTLRQLSLESAQPVWME--RLGN----IFAEGLASDGERLYQLTWTEGLLFTWSG---MPPQ------- 127 (268)
T ss_dssp TTEEEEEETTTTEEEECCSSCSSCSEEE--ECTT----CCEEEEEECSSCEEEEESSSCEEEEEET---TTTE-------
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCCC----cceeEEEEeCCEEEEEEccCCEEEEEEC---CcCc-------
Confidence 5678888899999999998 2222 1112 333223334444444 446778888887 3333
Q ss_pred eeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeecc
Q psy13856 108 KLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187 (271)
Q Consensus 108 ~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~ 187 (271)
.+.++.- ...-+.+++ |+..|+.+..++.|.++|..+.+.........
T Consensus 128 -------------------------~~~ti~~-~~eGwGLt~------Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~ 175 (268)
T 3nok_A 128 -------------------------RERTTRY-SGEGWGLCY------WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKL 175 (268)
T ss_dssp -------------------------EEEEEEC-SSCCCCEEE------ETTEEEEECSSSEEEEECTTTCCEEEEEECEE
T ss_pred -------------------------EEEEEeC-CCceeEEec------CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCC
Confidence 3333332 122245554 34555555568999999998876521112222
Q ss_pred CC---CCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 188 FD---DVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 188 h~---~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
+. ..++.+.|. +|.+.+..-.++.|.+.|+.++ +.+..+.-.
T Consensus 176 ~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG---~V~~~Idl~ 220 (268)
T 3nok_A 176 RGQPVELINELECA-NGVIYANIWHSSDVLEIDPATG---TVVGVIDAS 220 (268)
T ss_dssp TTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTC---BEEEEEECH
T ss_pred CCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCC---cEEEEEECC
Confidence 22 245677777 7765555546889999999988 666666553
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=97.30 E-value=0.013 Score=51.16 Aligned_cols=86 Identities=9% Similarity=0.017 Sum_probs=57.0
Q ss_pred ceEEEEEccCCCCCCcEEEEEe-CCCeEEEEEcCCCcee---------eeeeeccCCCCeEEEEEecCCCEEEE-EECCC
Q psy13856 143 WVRDVAWAPSWGLSKCMIASCS-QDRKVIIWTSNDYVTW---------TPFIMNTFDDVVWNVSWSLTGDILTV-SCGDN 211 (271)
Q Consensus 143 ~v~~v~~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~---------~~~~~~~h~~~v~~v~~~~~g~~l~s-~s~D~ 211 (271)
...++.++| ||++++.++ .+.+|.++|+.+.+.. .......-......++|+|+| ++.+ .--|+
T Consensus 278 ~PhGv~~sP----DGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG-~aY~t~~lds 352 (595)
T 1fwx_A 278 NPHGCNMAP----DKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRG-NAYTSLFLDS 352 (595)
T ss_dssp SCCCEEECT----TSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTS-EEEEEETTTT
T ss_pred CceEEEEcC----CCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCC-eEEEEEecCC
Confidence 456899999 688665544 6889999999864200 011111223467889999999 5554 44599
Q ss_pred cEEEEEeCCC-------CceeEEEEeccc
Q psy13856 212 SVSLWKENTD-------GAWQCITEMGKT 233 (271)
Q Consensus 212 ~v~iw~~~~~-------~~~~~~~~~~~~ 233 (271)
+|..|+++.. ..++.+.++..+
T Consensus 353 qV~kwdi~~a~~~~~g~~~~~vi~kidV~ 381 (595)
T 1fwx_A 353 QVVKWNIEDAIRAYAGEKVDPIKDKLDVH 381 (595)
T ss_dssp EEEEEEHHHHHHHHHTCSCCCEEEEEECS
T ss_pred cEEEEEhhHhhhhhcccccceeEEEeecc
Confidence 9999999751 124667777654
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.28 E-value=0.0055 Score=55.69 Aligned_cols=157 Identities=10% Similarity=-0.012 Sum_probs=82.5
Q ss_pred CCC-CCCCEEEEcc-----CCCeEEeccc--e-eeeccccccccccceEEEEcCCCCeEEEEeCCC-----cEEEEEeec
Q psy13856 30 SPL-RIGHTLISCD-----TQAHIGIRST--I-SLLQGSVYLRRESNKAGALSPKLNRSATSSFHE-----AAKHLGTVQ 95 (271)
Q Consensus 30 ~~~-~~g~~l~s~s-----~d~~i~lwd~--~-~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~-----~i~~~d~~~ 95 (271)
..+ |||++||-+. ....|+++|+ - ..+..+-.. ...+++|+||++.|+....|. .|+.+++
T Consensus 180 ~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~---~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l-- 254 (751)
T 2xe4_A 180 KPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSG---TNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM-- 254 (751)
T ss_dssp EECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEE---ECSCCEECSSTTEEEEEEECTTCCEEEEEEEET--
T ss_pred EecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccC---ceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC--
Confidence 345 7999877432 2235888887 2 222221111 134789999999887776552 2333443
Q ss_pred CCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC---CCeEEEE
Q psy13856 96 SSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ---DRKVIIW 172 (271)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~---dg~i~iw 172 (271)
.++... . ..+..- ........+.|+| |+++|+..+. ...|.++
T Consensus 255 -gt~~~~--------------------------~--~lv~~~-~~~~~~~~~~~Sp----Dg~~l~~~~~~~~~~~l~~~ 300 (751)
T 2xe4_A 255 -GKLQSE--------------------------D--VCLYEE-HNPLFSAFMYKAA----DTNTLCIGSQSPETAEVHLL 300 (751)
T ss_dssp -TSCGGG--------------------------C--EEEEEC-CCTTCEEEEEECT----TSSEEEEEEECSSCEEEEEE
T ss_pred -CCCchh--------------------------c--EEEEec-CCCceEEEEEECC----CCCEEEEEecCCCCceEEEE
Confidence 111100 0 111111 1233456789999 7887776552 4568888
Q ss_pred EcCCCceeee--eee-ccCCCCeEEEEEecCCCEEEEEECC--C--cEEEEEeCCCCceeE
Q psy13856 173 TSNDYVTWTP--FIM-NTFDDVVWNVSWSLTGDILTVSCGD--N--SVSLWKENTDGAWQC 226 (271)
Q Consensus 173 d~~~~~~~~~--~~~-~~h~~~v~~v~~~~~g~~l~s~s~D--~--~v~iw~~~~~~~~~~ 226 (271)
|+.++... . ..+ ....+..+++.|+..+.+++.+..+ + .|..+++.+.+.|..
T Consensus 301 d~~~~~~~-~~~~~l~~~~~~~~~s~~~~~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~ 360 (751)
T 2xe4_A 301 DLRKGNAH-NTLEIVRPREKGVRYDVQMHGTSHLVILTNEGGAVNHKLLIAPRGQPSDWSH 360 (751)
T ss_dssp ESSSCTTC-CCEEESSCCCTTCCEEEEEETTTEEEEEECTTTCTTCEEEEEETTSTTCCCC
T ss_pred ECCCCCCC-ceeEEeecCCCCceEEEeeeeCCEEEEEeCCCCCCCcEEEEEcCCCccccee
Confidence 88765211 2 222 3344566666665544445554444 2 455556543234543
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.023 Score=44.25 Aligned_cols=161 Identities=7% Similarity=-0.003 Sum_probs=92.9
Q ss_pred eeeeccccccccccceEEEEcCCCCeEEEEeCCC--cEEEEEeecCCCCceeeccce-----eeEEEeeccceee-----
Q psy13856 53 ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHE--AAKHLGTVQSSSPACLQPKYF-----KLTVYSTKLTRIL----- 120 (271)
Q Consensus 53 ~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~--~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~----- 120 (271)
++.+ .|... .-...+.|+ ++.+..+.+.++ +|+.+|. .+++.+..... ...+ +..++.+.
T Consensus 34 v~~~-phd~~--~ftqGL~~~-~~~LyestG~~g~S~v~~vD~---~Tgkv~~~~~l~~~~FgeGi-t~~g~~ly~ltw~ 105 (262)
T 3nol_A 34 VHSY-PHDTK--AFTEGFFYR-NGYFYESTGLNGRSSIRKVDI---ESGKTLQQIELGKRYFGEGI-SDWKDKIVGLTWK 105 (262)
T ss_dssp EEEE-ECCTT--CEEEEEEEE-TTEEEEEEEETTEEEEEEECT---TTCCEEEEEECCTTCCEEEE-EEETTEEEEEESS
T ss_pred EEEe-cCCCC--cccceEEEE-CCEEEEECCCCCCceEEEEEC---CCCcEEEEEecCCccceeEE-EEeCCEEEEEEee
Confidence 4554 45443 003689998 677777777766 8999998 77777665522 1111 22233332
Q ss_pred -eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCC---CCeEEEE
Q psy13856 121 -ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFD---DVVWNVS 196 (271)
Q Consensus 121 -~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~---~~v~~v~ 196 (271)
+.+.+.+....+.+.++.-. ..=+.++ + |+..|+....++.|.++|..+.+........... ..++.+.
T Consensus 106 ~~~v~v~D~~t~~~~~ti~~~-~eG~glt--~----dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRSFNYD-GEGWGLT--H----NDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp SSEEEEEETTTCCEEEEEECS-SCCCCEE--E----CSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred CCEEEEEECccCcEEEEEECC-CCceEEe--c----CCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 44555233333556665532 2223444 3 3455555555788999999887652111121122 3456677
Q ss_pred EecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 197 WSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 197 ~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
|. +|.+.+..-.++.|.+.|+.++ +.+..+..
T Consensus 179 ~~-~G~lyan~w~~~~I~vIDp~tG---~V~~~Id~ 210 (262)
T 3nol_A 179 WV-DGEIFANVWQTNKIVRIDPETG---KVTGIIDL 210 (262)
T ss_dssp EE-TTEEEEEETTSSEEEEECTTTC---BEEEEEEC
T ss_pred EE-CCEEEEEEccCCeEEEEECCCC---cEEEEEEC
Confidence 76 6766655556889999999988 66666654
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=97.23 E-value=0.047 Score=42.55 Aligned_cols=163 Identities=10% Similarity=0.027 Sum_probs=94.5
Q ss_pred CCCEEEEccCCC--eEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEe-CCCcEEEEEeecCCCCceeecc
Q psy13856 34 IGHTLISCDTQA--HIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSS-FHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 34 ~g~~l~s~s~d~--~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
++.++.+.+.+| .|+.+|+ +..+.-. .. .+.....+++..|.... .++.+.++|. .+.+.+..+
T Consensus 52 ~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~----~FgeGit~~g~~ly~ltw~~~~v~v~D~---~t~~~~~ti 123 (262)
T 3nol_A 52 NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KR----YFGEGISDWKDKIVGLTWKNGLGFVWNI---RNLRQVRSF 123 (262)
T ss_dssp TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TT----CCEEEEEEETTEEEEEESSSSEEEEEET---TTCCEEEEE
T ss_pred CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-Cc----cceeEEEEeCCEEEEEEeeCCEEEEEEC---ccCcEEEEE
Confidence 667788888776 8999998 2222221 12 34433444455555554 5788989998 777777666
Q ss_pred ceee--EEEeeccceee-----eEEEEeeCCceEEeEEecC--CC---cceEEEEEccCCCCCCcEEEEEeCCCeEEEEE
Q psy13856 106 YFKL--TVYSTKLTRIL-----ILVRICGGDKWIEETKLEN--HS---DWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT 173 (271)
Q Consensus 106 ~~~~--~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~--h~---~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd 173 (271)
.++. .-.+.+++.+. +.+.+.+...++....+.- .. ..++.+.|. ++.+++..-.+..|.+.|
T Consensus 124 ~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-----~G~lyan~w~~~~I~vID 198 (262)
T 3nol_A 124 NYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-----DGEIFANVWQTNKIVRID 198 (262)
T ss_dssp ECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-----TTEEEEEETTSSEEEEEC
T ss_pred ECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-----CCEEEEEEccCCeEEEEE
Confidence 4321 12223344443 4455523222234443322 11 234456775 367777776788999999
Q ss_pred cCCCceeeeeeecc--------C--CCCeEEEEEecCCCEEEEEEC
Q psy13856 174 SNDYVTWTPFIMNT--------F--DDVVWNVSWSLTGDILTVSCG 209 (271)
Q Consensus 174 ~~~~~~~~~~~~~~--------h--~~~v~~v~~~~~g~~l~s~s~ 209 (271)
.++++....-.+.+ + ....+.++|+|+++.|+..+.
T Consensus 199 p~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK 244 (262)
T 3nol_A 199 PETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK 244 (262)
T ss_dssp TTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred CCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence 99987521112211 1 235689999998877766654
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0052 Score=51.75 Aligned_cols=77 Identities=9% Similarity=0.030 Sum_probs=55.5
Q ss_pred EEEEccCCCCCCcEEEEEe----------CCCeEEEEEcCCCceeeeeeec-c------CCCCeEEEEEecCCCEEEEEE
Q psy13856 146 DVAWAPSWGLSKCMIASCS----------QDRKVIIWTSNDYVTWTPFIMN-T------FDDVVWNVSWSLTGDILTVSC 208 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~-~------h~~~v~~v~~~~~g~~l~s~s 208 (271)
.+.++| |+++++.+. .++.|.++|..+.+. ...+. + .......+.|+|||++++.+.
T Consensus 122 gia~Sp----Dgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~v--v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n 195 (426)
T 3c75_H 122 HPVAAE----DGSFFAQASTVFERIARGKRTDYVEVFDPVTFLP--IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQ 195 (426)
T ss_dssp EEEECT----TSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCE--EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEE
T ss_pred ceEECC----CCCEEEEEeccccccccCCCCCEEEEEECCCCcE--EEEEECCCccccccCCCcceEEEcCCCCEEEEEe
Confidence 799999 677776665 467899999998775 33322 1 112345788999999999887
Q ss_pred C--CCcEEEEEeCCCCceeEEEEec
Q psy13856 209 G--DNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 209 ~--D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
. ++.|.+.|..+. +.+.++.
T Consensus 196 ~~~~~~VsVID~~t~---kvv~~I~ 217 (426)
T 3c75_H 196 FSPAPAVGVVDLEGK---TFDRMLD 217 (426)
T ss_dssp CSSSCEEEEEETTTT---EEEEEEE
T ss_pred cCCCCeEEEEECCCC---eEEEEEE
Confidence 4 578999999877 4444443
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.18 E-value=0.025 Score=47.75 Aligned_cols=73 Identities=7% Similarity=0.029 Sum_probs=50.0
Q ss_pred eEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEE-ECCCcEEEEEeCC
Q psy13856 144 VRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVS-CGDNSVSLWKENT 220 (271)
Q Consensus 144 v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~-s~D~~v~iw~~~~ 220 (271)
...++++|. ++.++++-..++.|..++............. .....+.++|+|+|++|..+ ...+.|..++.+.
T Consensus 228 p~giavdp~---~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~-~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~ 301 (430)
T 3tc9_A 228 CNGAETHPI---NGELYFNSWNAGQVFRYDFTTQETTPLFTIQ-DSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDW 301 (430)
T ss_dssp CCCEEECTT---TCCEEEEETTTTEEEEEETTTTEEEEEEECS-SSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred ceEEEEeCC---CCEEEEEECCCCEEEEEECCCCcEEEEEEcC-CCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCc
Confidence 457889995 4777777777889999998765421111111 12356789999999955554 4577899988764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.039 Score=44.05 Aligned_cols=164 Identities=9% Similarity=-0.045 Sum_probs=87.4
Q ss_pred CCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccc---
Q psy13856 34 IGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKY--- 106 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~--- 106 (271)
+|. +..++.++.|..+|. ...+...... +.++.+.+++...+. + +.+..+| . ++.......
T Consensus 147 ~g~-l~vgt~~~~l~~~d~~g~~~~~~~~~~~~----~~~~~~d~~g~l~v~-t--~~l~~~d-~---~g~~~~~~~~~~ 214 (330)
T 3hxj_A 147 DGT-IYVGSNDNYLYAINPDGTEKWRFKTNDAI----TSAASIGKDGTIYFG-S--DKVYAIN-P---DGTEKWNFYAGY 214 (330)
T ss_dssp TSC-EEEECTTSEEEEECTTSCEEEEEECSSCC----CSCCEECTTCCEEEE-S--SSEEEEC-T---TSCEEEEECCSS
T ss_pred CCE-EEEEcCCCEEEEECCCCCEeEEEecCCCc----eeeeEEcCCCEEEEE-e--CEEEEEC-C---CCcEEEEEccCC
Confidence 455 556677789999987 2233333334 667777777765444 3 6777777 2 222222111
Q ss_pred --eeeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce
Q psy13856 107 --FKLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT 179 (271)
Q Consensus 107 --~~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 179 (271)
........++...+ +...+..++ .....+......+.++...+ ++ .|..++.+|.+..+|. +++.
T Consensus 215 ~~~~~~~~~~~g~l~v~t~~~gl~~~~~~g--~~~~~~~~~~~~~~~~~~~~----~g-~l~v~t~~ggl~~~d~-~g~~ 286 (330)
T 3hxj_A 215 WTVTRPAISEDGTIYVTSLDGHLYAINPDG--TEKWRFKTGKRIESSPVIGN----TD-TIYFGSYDGHLYAINP-DGTE 286 (330)
T ss_dssp CCCSCCEECTTSCEEEEETTTEEEEECTTS--CEEEEEECSSCCCSCCEECT----TS-CEEEECTTCEEEEECT-TSCE
T ss_pred cceeceEECCCCeEEEEcCCCeEEEECCCC--CEeEEeeCCCCccccceEcC----CC-eEEEecCCCCEEEECC-CCcE
Confidence 11112222233333 223333333 23333333333344455554 24 5666777888999996 4443
Q ss_pred eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 180 WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 180 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
...+......+.++...++|. |..++.+|.+++.....
T Consensus 287 --~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 287 --KWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp --EEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred --EEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 223333344566777777776 55688899998887653
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.10 E-value=5.4e-05 Score=62.77 Aligned_cols=103 Identities=12% Similarity=-0.043 Sum_probs=52.5
Q ss_pred CCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCC
Q psy13856 75 KLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWG 154 (271)
Q Consensus 75 ~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~ 154 (271)
++..+++++.|+.++.||. .+++.+. .+.. +.+.+..+.+
T Consensus 8 ~~~~v~~gs~dg~v~a~d~---~tG~~~W--------------------------------~~~~--~~~~s~p~~~--- 47 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSK---RTGSIKW--------------------------------TLKE--DPVLQVPTHV--- 47 (369)
T ss_dssp CTTEEEEEETTSEEEEEET---TTCCEEE--------------------------------EEEC--CCSCCCC------
T ss_pred eCCEEEEEcCCCEEEEEEC---CCCCEEE--------------------------------EecC--CCceecceEc---
Confidence 5678999999999999998 5554433 1121 2233333334
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCC-CeE-EEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 155 LSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDD-VVW-NVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 155 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~-~v~-~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
++..+++++.|+.++.||..+++. ......+.. .+. +..+. .+..+++++.|+.|+.||..++
T Consensus 48 -~g~~~v~~s~dg~l~a~d~~tG~~--~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG 112 (369)
T 2hz6_A 48 -EEPAFLPDPNDGSLYTLGSKNNEG--LTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTG 112 (369)
T ss_dssp ---CCEEECTTTCCEEEC-----CC--SEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC--
T ss_pred -CCCEEEEeCCCCEEEEEECCCCce--eeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCC
Confidence 466788888999999999987764 222221110 010 00011 2345666777888888888766
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.024 Score=50.97 Aligned_cols=54 Identities=15% Similarity=0.251 Sum_probs=39.8
Q ss_pred CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 166 DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
+|.|+.||+.+++. .-....+ .++..-.+...+.+++.++.|+.++.||.+++.
T Consensus 454 ~g~l~A~D~~tG~~--~W~~~~~-~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~ 507 (689)
T 1yiq_A 454 SGKLIAWDPVKQQA--AWEVPYV-TIFNGGTLSTAGNLVFEGSADGRVIAYAADTGE 507 (689)
T ss_dssp EEEEEEEETTTTEE--EEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ceeEEEEECCCCCe--EeEccCC-CCccCccceECCCEEEEECCCCcEEEEECCCCc
Confidence 47899999999874 3333322 333444566778899999999999999999883
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.083 Score=41.37 Aligned_cols=173 Identities=6% Similarity=-0.090 Sum_probs=100.9
Q ss_pred CCCCEEEEccC--CCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEE-eCCCcEEEEEeecCCCCceeec
Q psy13856 33 RIGHTLISCDT--QAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATS-SFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 33 ~~g~~l~s~s~--d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~-s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
+|+.++++.+. ++.|++.|. +..+.-.... ..-.+++. +..|..+ -.++.+.++|. .+.+.+..
T Consensus 30 ~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~---fgeGi~~~--g~~lyv~t~~~~~v~viD~---~t~~v~~~ 101 (266)
T 2iwa_A 30 ENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSY---FGEGLTLL--NEKLYQVVWLKNIGFIYDR---RTLSNIKN 101 (266)
T ss_dssp STTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTC---CEEEEEEE--TTEEEEEETTCSEEEEEET---TTTEEEEE
T ss_pred CCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCc---ceEEEEEe--CCEEEEEEecCCEEEEEEC---CCCcEEEE
Confidence 46776666553 689999998 2322211111 02244444 5555444 46788989998 67776665
Q ss_pred ccee---eEEEeeccceee-----eEEEEeeCCceEEeEEecC--CC---cceEEEEEccCCCCCCcEEEEEeCCCeEEE
Q psy13856 105 KYFK---LTVYSTKLTRIL-----ILVRICGGDKWIEETKLEN--HS---DWVRDVAWAPSWGLSKCMIASCSQDRKVII 171 (271)
Q Consensus 105 ~~~~---~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~--h~---~~v~~v~~~p~~~~~~~~l~s~~~dg~i~i 171 (271)
+.++ ....+.+++.+. +.+.+.+....+....+.- +. ...+.+.|.. +..++....++.|.+
T Consensus 102 i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~d-----g~lyvn~~~~~~V~v 176 (266)
T 2iwa_A 102 FTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYIN-----GEVWANIWQTDCIAR 176 (266)
T ss_dssp EECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET-----TEEEEEETTSSEEEE
T ss_pred EECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEEC-----CEEEEecCCCCeEEE
Confidence 5322 112333454444 5566522222234444331 11 1356777763 666677767899999
Q ss_pred EEcCCCceeeeeeec--cC-----------CCCeEEEEEecCCCEE-EEEECCCcEEEEEeCC
Q psy13856 172 WTSNDYVTWTPFIMN--TF-----------DDVVWNVSWSLTGDIL-TVSCGDNSVSLWKENT 220 (271)
Q Consensus 172 wd~~~~~~~~~~~~~--~h-----------~~~v~~v~~~~~g~~l-~s~s~D~~v~iw~~~~ 220 (271)
-|..+++. ...+. +. ....+.++|+|++..+ +++...++|...++..
T Consensus 177 ID~~tg~V--~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~ 237 (266)
T 2iwa_A 177 ISAKDGTL--LGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHL 237 (266)
T ss_dssp EETTTCCE--EEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEE
T ss_pred EECCCCcE--EEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEec
Confidence 99999875 33332 11 1356899999997655 4555678888888764
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.016 Score=46.43 Aligned_cols=27 Identities=19% Similarity=0.035 Sum_probs=12.4
Q ss_pred CCeEEEEEecCCCEEEEEECCCcEEEEE
Q psy13856 190 DVVWNVSWSLTGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 190 ~~v~~v~~~~~g~~l~s~s~D~~v~iw~ 217 (271)
..+.++...++|. |..++.++.|..++
T Consensus 215 ~~~~~~~~~~~g~-l~v~t~~~gl~~~~ 241 (330)
T 3hxj_A 215 WTVTRPAISEDGT-IYVTSLDGHLYAIN 241 (330)
T ss_dssp CCCSCCEECTTSC-EEEEETTTEEEEEC
T ss_pred cceeceEECCCCe-EEEEcCCCeEEEEC
Confidence 3344555555543 23334445555554
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.092 Score=40.76 Aligned_cols=143 Identities=8% Similarity=-0.086 Sum_probs=82.6
Q ss_pred CCCEEEEccCCCeEEeccc----eeee-ccccccccccceEEEEcCCCCeEE-EEeCCCcEEEEEeecCCCCceeeccce
Q psy13856 34 IGHTLISCDTQAHIGIRST----ISLL-QGSVYLRRESNKAGALSPKLNRSA-TSSFHEAAKHLGTVQSSSPACLQPKYF 107 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~----~~~~-~~h~~~~~~~i~~~~~s~~~~~l~-s~s~d~~i~~~d~~~~~~~~~~~~~~~ 107 (271)
++.++++-..++.|..++. ...+ ...... ..++++++++..|+ +-...+.|.+++.. . ...
T Consensus 47 ~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~----p~~ia~d~~~~~lyv~d~~~~~I~~~~~~---g-~~~----- 113 (267)
T 1npe_A 47 DKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS----PEGIALDHLGRTIFWTDSQLDRIEVAKMD---G-TQR----- 113 (267)
T ss_dssp TTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC----EEEEEEETTTTEEEEEETTTTEEEEEETT---S-CSC-----
T ss_pred CCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC----ccEEEEEecCCeEEEEECCCCEEEEEEcC---C-CCE-----
Confidence 3456666667788988887 2222 111123 67899999765554 44456677777751 1 000
Q ss_pred eeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC--CCeEEEEEcCCCceeeeeee
Q psy13856 108 KLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ--DRKVIIWTSNDYVTWTPFIM 185 (271)
Q Consensus 108 ~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~ 185 (271)
..+ ..........++++|. ++.++++... .+.|..++...... ....
T Consensus 114 ------------------------~~~--~~~~~~~P~~i~vd~~---~g~lyv~~~~~~~~~I~~~~~dg~~~--~~~~ 162 (267)
T 1npe_A 114 ------------------------RVL--FDTGLVNPRGIVTDPV---RGNLYWTDWNRDNPKIETSHMDGTNR--RILA 162 (267)
T ss_dssp ------------------------EEE--ECSSCSSEEEEEEETT---TTEEEEEECCSSSCEEEEEETTSCCC--EEEE
T ss_pred ------------------------EEE--EECCCCCccEEEEeeC---CCEEEEEECCCCCcEEEEEecCCCCc--EEEE
Confidence 010 1111234578999994 3444444433 46888888764331 1122
Q ss_pred ccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeCC
Q psy13856 186 NTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKENT 220 (271)
Q Consensus 186 ~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~~ 220 (271)
.........+++++++..|..+. ..+.|..++++.
T Consensus 163 ~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g 198 (267)
T 1npe_A 163 QDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQ 198 (267)
T ss_dssp CTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTE
T ss_pred ECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCC
Confidence 22234678899999876665554 467899999864
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=96.93 E-value=0.018 Score=51.57 Aligned_cols=72 Identities=8% Similarity=0.074 Sum_probs=46.2
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeec-cCCCCeEEEEEecCCCE-EEEEEC----------
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMN-TFDDVVWNVSWSLTGDI-LTVSCG---------- 209 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~h~~~v~~v~~~~~g~~-l~s~s~---------- 209 (271)
..+.+..+.+ ++.+++.++.||.+++||.++++. +..+. ++.....-+.|.++|+. ++..+.
T Consensus 477 ~~~~~g~~~~----~g~~v~~g~~dg~l~a~D~~tG~~--lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~ 550 (677)
T 1kb0_A 477 SPWNGGTLTT----AGNVVFQGTADGRLVAYHAATGEK--LWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAAR 550 (677)
T ss_dssp SSCCCCEEEE----TTTEEEEECTTSEEEEEETTTCCE--EEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCC
T ss_pred CCCcCcceEe----CCCEEEEECCCCcEEEEECCCCce--eeeeeCCCCcccCCEEEEeCCEEEEEEeccCCcccccccc
Confidence 3344444555 467888889999999999999886 44443 22222234567788864 444333
Q ss_pred ------CCcEEEEEeC
Q psy13856 210 ------DNSVSLWKEN 219 (271)
Q Consensus 210 ------D~~v~iw~~~ 219 (271)
.+.+..|.+.
T Consensus 551 ~~~~~~~~~l~~f~l~ 566 (677)
T 1kb0_A 551 ATERQGPGTVYTFVVG 566 (677)
T ss_dssp SCSCCCCCEEEEEEET
T ss_pred ccccCCCCeEEEEecc
Confidence 3678888876
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.041 Score=44.18 Aligned_cols=148 Identities=6% Similarity=-0.054 Sum_probs=82.2
Q ss_pred CCCCEEEEccCCCeEEeccc----eeeecccc---------c-------cccccceEEEEcC-CCCeEEEEeCCCcEEEE
Q psy13856 33 RIGHTLISCDTQAHIGIRST----ISLLQGSV---------Y-------LRRESNKAGALSP-KLNRSATSSFHEAAKHL 91 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~----~~~~~~h~---------~-------~~~~~i~~~~~s~-~~~~l~s~s~d~~i~~~ 91 (271)
++|.++.++..++.|..|+. +..+.... + .....+.++++.+ +++ |+.+...+.+..+
T Consensus 28 ~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~~~~i~~~ 106 (322)
T 2fp8_A 28 STNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDCYYHLSVV 106 (322)
T ss_dssp TTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEETTTEEEEE
T ss_pred CCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEECCCCEEEE
Confidence 47887778888899999987 22221100 0 0011267899997 554 4445444446666
Q ss_pred EeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecC-CCcceEEEEEcc-CCCCCCcEEEEEeC----
Q psy13856 92 GTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLEN-HSDWVRDVAWAP-SWGLSKCMIASCSQ---- 165 (271)
Q Consensus 92 d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~-h~~~v~~v~~~p-~~~~~~~~l~s~~~---- 165 (271)
+. ..+. +.. ......+ .......+++.| . +.+.++-..
T Consensus 107 d~---~~g~-~~~----------------------------~~~~~~~~~~~~p~~i~~d~~~----G~l~v~d~~~~~~ 150 (322)
T 2fp8_A 107 GS---EGGH-ATQ----------------------------LATSVDGVPFKWLYAVTVDQRT----GIVYFTDVSTLYD 150 (322)
T ss_dssp CT---TCEE-CEE----------------------------EESEETTEECSCEEEEEECTTT----CCEEEEESCSSCC
T ss_pred eC---CCCE-EEE----------------------------ecccCCCCcccccceEEEecCC----CEEEEECCccccc
Confidence 64 2111 110 0000011 112356788888 4 555555322
Q ss_pred -------------CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEE-ECCCcEEEEEeCC
Q psy13856 166 -------------DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVS-CGDNSVSLWKENT 220 (271)
Q Consensus 166 -------------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~-s~D~~v~iw~~~~ 220 (271)
++.|..+|..++.. ..+.......+.++|+|+|..|..+ +.++.|..|++..
T Consensus 151 ~~~~~~~~~~~~~~g~v~~~d~~~~~~---~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~ 216 (322)
T 2fp8_A 151 DRGVQQIMDTSDKTGRLIKYDPSTKET---TLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG 216 (322)
T ss_dssp TTCHHHHHHHTCCCEEEEEEETTTTEE---EEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred ccccceehcccCCCceEEEEeCCCCEE---EEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence 46788888766542 2221112345679999999866555 4568899999874
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=96.87 E-value=0.11 Score=40.41 Aligned_cols=147 Identities=7% Similarity=-0.054 Sum_probs=81.4
Q ss_pred CCEEEEccCCCeEEeccc----eeeecc-ccccccccceEEEEcCCCCeEEEEeC---CCcEEEEEeecCCCCceeeccc
Q psy13856 35 GHTLISCDTQAHIGIRST----ISLLQG-SVYLRRESNKAGALSPKLNRSATSSF---HEAAKHLGTVQSSSPACLQPKY 106 (271)
Q Consensus 35 g~~l~s~s~d~~i~lwd~----~~~~~~-h~~~~~~~i~~~~~s~~~~~l~s~s~---d~~i~~~d~~~~~~~~~~~~~~ 106 (271)
+.++++-...+.|.+++. ...+.. .... ...++++|++..|..+.. .+.|..++.. +...
T Consensus 91 ~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~----P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~d----g~~~---- 158 (267)
T 1npe_A 91 RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVN----PRGIVTDPVRGNLYWTDWNRDNPKIETSHMD----GTNR---- 158 (267)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEECSSCSS----EEEEEEETTTTEEEEEECCSSSCEEEEEETT----SCCC----
T ss_pred CeEEEEECCCCEEEEEEcCCCCEEEEEECCCCC----ccEEEEeeCCCEEEEEECCCCCcEEEEEecC----CCCc----
Confidence 445555556678887776 222211 1123 678999997665554443 3456555541 1000
Q ss_pred eeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeec
Q psy13856 107 FKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMN 186 (271)
Q Consensus 107 ~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 186 (271)
..+ ....-.....++++|. .+.++++-...+.|.++|...... .....
T Consensus 159 -------------------------~~~--~~~~~~~P~gia~d~~---~~~lyv~d~~~~~I~~~~~~g~~~--~~~~~ 206 (267)
T 1npe_A 159 -------------------------RIL--AQDNLGLPNGLTFDAF---SSQLCWVDAGTHRAECLNPAQPGR--RKVLE 206 (267)
T ss_dssp -------------------------EEE--ECTTCSCEEEEEEETT---TTEEEEEETTTTEEEEEETTEEEE--EEEEE
T ss_pred -------------------------EEE--EECCCCCCcEEEEcCC---CCEEEEEECCCCEEEEEecCCCce--EEEec
Confidence 111 1112245678999994 345556666678999999875332 22222
Q ss_pred cCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeCCCCceeEEEEec
Q psy13856 187 TFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 187 ~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
. ......++.. +..|..+. ..+.|..++..++ +.+.++.
T Consensus 207 ~-~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g---~~~~~i~ 246 (267)
T 1npe_A 207 G-LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAIS---KEMDTFH 246 (267)
T ss_dssp C-CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTT---EEEEEEC
T ss_pred C-CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCC---CceEEEc
Confidence 2 2234566654 44555554 5689999998766 5555554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.015 Score=52.89 Aligned_cols=114 Identities=12% Similarity=0.080 Sum_probs=69.7
Q ss_pred ceEEEEc-CCCCeEEEEe-CCC----cEEEEEeecCCCC-ceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecC
Q psy13856 67 NKAGALS-PKLNRSATSS-FHE----AAKHLGTVQSSSP-ACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLEN 139 (271)
Q Consensus 67 i~~~~~s-~~~~~l~s~s-~d~----~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~ 139 (271)
+...+|| |||++|+-+. .+| .|+++|+ .++ +.+. . .. .
T Consensus 176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl---~~g~~~l~-------------------------~--~~----~- 220 (751)
T 2xe4_A 176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRI---SDPSQTIA-------------------------D--KV----S- 220 (751)
T ss_dssp EEEEEECTTTTCEEEEEEESSSSSCEEEEEEET---TCTTCCCC-------------------------C--CE----E-
T ss_pred EeeeEecCCCCCEEEEEEeCCCCceEEEEEEEC---CCCCEeCC-------------------------c--cc----c-
Confidence 6788999 9999877543 232 4888887 333 2111 0 00 0
Q ss_pred CCcceEEEEEccCCCCCCcEEEEEeCC-----CeEEEEEcCCCceeeeeeec-cCCCCeEEEEEecCCCEEEEEEC---C
Q psy13856 140 HSDWVRDVAWAPSWGLSKCMIASCSQD-----RKVIIWTSNDYVTWTPFIMN-TFDDVVWNVSWSLTGDILTVSCG---D 210 (271)
Q Consensus 140 h~~~v~~v~~~p~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s~---D 210 (271)
....++.|+| |++.|+-...| ..|..+++.++.......+. ........+.|+|||++|+..+. .
T Consensus 221 --~~~~~~~Wsp----Dg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~ 294 (751)
T 2xe4_A 221 --GTNGEIVWGP----DHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPET 294 (751)
T ss_dssp --EECSCCEECS----STTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSC
T ss_pred --CceeeEEEec----CCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCC
Confidence 1134688999 67776666654 35788888765421122222 23345667899999998887663 3
Q ss_pred CcEEEEEeCCC
Q psy13856 211 NSVSLWKENTD 221 (271)
Q Consensus 211 ~~v~iw~~~~~ 221 (271)
..|+++|+.++
T Consensus 295 ~~l~~~d~~~~ 305 (751)
T 2xe4_A 295 AEVHLLDLRKG 305 (751)
T ss_dssp EEEEEEESSSC
T ss_pred ceEEEEECCCC
Confidence 46888887654
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.096 Score=46.68 Aligned_cols=80 Identities=3% Similarity=-0.034 Sum_probs=49.0
Q ss_pred EEEEEccCCCCCCcEEEEEeCCC-----------eEEEEEcCCCceeeeeee--ccCCCC-eEEEEEecCCCEEEEEECC
Q psy13856 145 RDVAWAPSWGLSKCMIASCSQDR-----------KVIIWTSNDYVTWTPFIM--NTFDDV-VWNVSWSLTGDILTVSCGD 210 (271)
Q Consensus 145 ~~v~~~p~~~~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~--~~h~~~-v~~v~~~~~g~~l~s~s~D 210 (271)
.++.+... ++.+++.|+.++ .+.+||..+..- .... ...... -.+.+..|++++++.|+.+
T Consensus 402 ~av~~~~~---~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W--~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~ 476 (656)
T 1k3i_A 402 NAVMYDAV---KGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPN--TVFASNGLYFARTFHTSVVLPDGSTFITGGQR 476 (656)
T ss_dssp EEEEEETT---TTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCE--EEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred ceEeccCC---CCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCe--eEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence 45555443 578888888543 677888776542 1111 111222 2344566899999999854
Q ss_pred -----------CcEEEEEeCCCCceeEEEEe
Q psy13856 211 -----------NSVSLWKENTDGAWQCITEM 230 (271)
Q Consensus 211 -----------~~v~iw~~~~~~~~~~~~~~ 230 (271)
..+.+||+.+ ..|..+..+
T Consensus 477 ~~~~~~~~~~~~~v~~ydp~t-~~W~~~~~~ 506 (656)
T 1k3i_A 477 RGIPFEDSTPVFTPEIYVPEQ-DTFYKQNPN 506 (656)
T ss_dssp BCCTTCCCSBCCCCEEEEGGG-TEEEECCCC
T ss_pred cCcCcCCCCcccceEEEcCCC-CceeecCCC
Confidence 5689999875 467665433
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.072 Score=43.61 Aligned_cols=148 Identities=9% Similarity=-0.045 Sum_probs=81.1
Q ss_pred cCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccc-----cccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCC
Q psy13856 29 ESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLR-----RESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSS 98 (271)
Q Consensus 29 ~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~-----~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~ 98 (271)
..|.-++..+..++.++.|..+|. +.......... ...+. .....++..++.++.++.+..+|. .+
T Consensus 47 ~~p~v~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~v~~~~g~l~a~d~---~t 122 (376)
T 3q7m_A 47 LHPALADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLS-GGVTVSGGHVYIGSEKAQVYALNT---SD 122 (376)
T ss_dssp CCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEE-EEEEEETTEEEEEETTSEEEEEET---TT
T ss_pred eccEEECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccc-cCceEeCCEEEEEcCCCEEEEEEC---CC
Confidence 356667778888888899999987 11111111000 00021 112224567788889999999997 54
Q ss_pred CceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc
Q psy13856 99 PACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV 178 (271)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~ 178 (271)
++.+.. .............. +..++.++.++.+..+|..+++
T Consensus 123 G~~~W~--------------------------------~~~~~~~~~~p~~~------~~~v~v~~~~g~l~~~d~~tG~ 164 (376)
T 3q7m_A 123 GTVAWQ--------------------------------TKVAGEALSRPVVS------DGLVLIHTSNGQLQALNEADGA 164 (376)
T ss_dssp CCEEEE--------------------------------EECSSCCCSCCEEE------TTEEEEECTTSEEEEEETTTCC
T ss_pred CCEEEE--------------------------------EeCCCceEcCCEEE------CCEEEEEcCCCeEEEEECCCCc
Confidence 544321 11111111111121 3467777889999999998887
Q ss_pred eeeeeeeccCCCCe-----EEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 179 TWTPFIMNTFDDVV-----WNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 179 ~~~~~~~~~h~~~v-----~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
. ........... ...... +..++.++.++.|..+|..++.
T Consensus 165 ~--~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~ 209 (376)
T 3q7m_A 165 V--KWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQ 209 (376)
T ss_dssp E--EEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCC
T ss_pred E--EEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCc
Confidence 4 22222111100 111111 4567778889999999988763
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.70 E-value=0.17 Score=40.75 Aligned_cols=150 Identities=11% Similarity=0.162 Sum_probs=82.7
Q ss_pred CCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccce
Q psy13856 32 LRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF 107 (271)
Q Consensus 32 ~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~ 107 (271)
..++..++.+...+..+-.|- ......+... +..+++.+++.+++.+ .++.+..-+. ..
T Consensus 130 ~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~----~~~~~~~~~~~~~~~g-~~G~~~~S~d---~g--------- 192 (327)
T 2xbg_A 130 LGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGV----MRNLNRSPSGEYVAVS-SRGSFYSTWE---PG--------- 192 (327)
T ss_dssp EETTEEEEEETTCCEEEESSTTSSEEEEECSCCCC----EEEEEECTTSCEEEEE-TTSSEEEEEC---TT---------
T ss_pred ECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcc----eEEEEEcCCCcEEEEE-CCCcEEEEeC---CC---------
Confidence 345666665544233355564 2222333444 7889999988776555 4555532221 00
Q ss_pred eeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeec-
Q psy13856 108 KLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMN- 186 (271)
Q Consensus 108 ~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~- 186 (271)
...|+.+. ......+..+.+.| ++.++ .++.+|.+++.+...+..|......
T Consensus 193 --------------------G~tW~~~~--~~~~~~~~~~~~~~----~g~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~ 245 (327)
T 2xbg_A 193 --------------------QTAWEPHN--RTTSRRLHNMGFTP----DGRLW-MIVNGGKIAFSDPDNSENWGELLSPL 245 (327)
T ss_dssp --------------------CSSCEEEE--CCSSSCEEEEEECT----TSCEE-EEETTTEEEEEETTEEEEECCCBCTT
T ss_pred --------------------CCceeECC--CCCCCccceeEECC----CCCEE-EEeCCceEEEecCCCCCeeEeccCCc
Confidence 12333332 23446778888888 46555 4456788777653334444222211
Q ss_pred -cCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEE
Q psy13856 187 -TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCI 227 (271)
Q Consensus 187 -~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~ 227 (271)
.....+.++.+.+++.+++++. ++.+ ++..+.+..|..+
T Consensus 246 ~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~ 285 (327)
T 2xbg_A 246 RRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQD 285 (327)
T ss_dssp SSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEEC
T ss_pred ccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEc
Confidence 1224588999998888776654 6766 3444555668654
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.11 Score=42.39 Aligned_cols=136 Identities=7% Similarity=-0.082 Sum_probs=75.4
Q ss_pred CCCCCCEEEEccCCCeEEeccc---eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccce
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST---ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF 107 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~---~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~ 107 (271)
|...+..+..++.++.+..+|. ...+...... ...+.. ++..++.++.++.+..+|. .+++.+.
T Consensus 235 p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~~----~~~~~~--~~~~l~~~~~~g~l~~~d~---~tG~~~w---- 301 (376)
T 3q7m_A 235 PVVVNGVVFALAYNGNLTALDLRSGQIMWKRELGS----VNDFIV--DGNRIYLVDQNDRVMALTI---DGGVTLW---- 301 (376)
T ss_dssp CEEETTEEEEECTTSCEEEEETTTCCEEEEECCCC----EEEEEE--ETTEEEEEETTCCEEEEET---TTCCEEE----
T ss_pred cEEECCEEEEEecCcEEEEEECCCCcEEeeccCCC----CCCceE--ECCEEEEEcCCCeEEEEEC---CCCcEEE----
Confidence 3334556666777788888886 1111111112 223333 3556777778888888886 4443222
Q ss_pred eeEEEeeccceeeeEEEEeeCCceEEeEEec-CCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeec
Q psy13856 108 KLTVYSTKLTRILILVRICGGDKWIEETKLE-NHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMN 186 (271)
Q Consensus 108 ~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~-~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 186 (271)
... .....+...... +..+..++.+|.+.++|..+++. .....
T Consensus 302 ----------------------------~~~~~~~~~~~~~~~~------~~~l~v~~~~g~l~~~d~~tG~~--~~~~~ 345 (376)
T 3q7m_A 302 ----------------------------TQSDLLHRLLTSPVLY------NGNLVVGDSEGYLHWINVEDGRF--VAQQK 345 (376)
T ss_dssp ----------------------------EECTTTTSCCCCCEEE------TTEEEEECTTSEEEEEETTTCCE--EEEEE
T ss_pred ----------------------------eecccCCCcccCCEEE------CCEEEEEeCCCeEEEEECCCCcE--EEEEe
Confidence 111 111112222222 35777888899999999998875 33333
Q ss_pred cCCCCeEE-EEEecCCCEEEEEECCCcEEEEE
Q psy13856 187 TFDDVVWN-VSWSLTGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 187 ~h~~~v~~-v~~~~~g~~l~s~s~D~~v~iw~ 217 (271)
.....+.. ... .+..|+.++.||.|+.|+
T Consensus 346 ~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 346 VDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp CCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred cCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 22222221 111 245778888999999887
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.2 Score=38.58 Aligned_cols=150 Identities=5% Similarity=-0.010 Sum_probs=88.0
Q ss_pred ceEEEEcCCCCeEEEEeCC--CcEEEEEeecCCCCceeeccce-----eeEEEeeccceee------eEEEEeeCCceEE
Q psy13856 67 NKAGALSPKLNRSATSSFH--EAAKHLGTVQSSSPACLQPKYF-----KLTVYSTKLTRIL------ILVRICGGDKWIE 133 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d--~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~------~~v~i~~~~~~~~ 133 (271)
...+.|+. +.+..+.+.+ .+|+.+|. .+++.++.... ...+.. .++.+. +.+.+.+...++.
T Consensus 23 tqGL~~~~-~~LyestG~~g~S~v~~vD~---~tgkv~~~~~l~~~~fgeGi~~-~~~~ly~ltw~~~~v~v~D~~tl~~ 97 (243)
T 3mbr_X 23 TEGLFYLR-GHLYESTGETGRSSVRKVDL---ETGRILQRAEVPPPYFGAGIVA-WRDRLIQLTWRNHEGFVYDLATLTP 97 (243)
T ss_dssp EEEEEEET-TEEEEEECCTTSCEEEEEET---TTCCEEEEEECCTTCCEEEEEE-ETTEEEEEESSSSEEEEEETTTTEE
T ss_pred cccEEEEC-CEEEEECCCCCCceEEEEEC---CCCCEEEEEeCCCCcceeEEEE-eCCEEEEEEeeCCEEEEEECCcCcE
Confidence 45899986 5566666665 48999999 77777765422 222222 233332 5555533333366
Q ss_pred eEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCC---CCeEEEEEecCCCEEEEEECC
Q psy13856 134 ETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFD---DVVWNVSWSLTGDILTVSCGD 210 (271)
Q Consensus 134 ~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D 210 (271)
+.++... ..-+.+++. .+.+++| ..++.|.++|..+.+.........+. ..++.+.|. +|...+..-.+
T Consensus 98 ~~ti~~~-~~Gwglt~d-----g~~L~vS-dgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s 169 (243)
T 3mbr_X 98 RARFRYP-GEGWALTSD-----DSHLYMS-DGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLT 169 (243)
T ss_dssp EEEEECS-SCCCEEEEC-----SSCEEEE-CSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTT
T ss_pred EEEEeCC-CCceEEeeC-----CCEEEEE-CCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCC
Confidence 6666532 223455543 2345555 45889999999887652111222222 245667765 66666555567
Q ss_pred CcEEEEEeCCCCceeEEEEecc
Q psy13856 211 NSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 211 ~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
..|.+.|+.++ +.+..+.-
T Consensus 170 ~~I~vIDp~tG---~V~~~idl 188 (243)
T 3mbr_X 170 SRIARIDPASG---KVVAWIDL 188 (243)
T ss_dssp TEEEEECTTTC---BEEEEEEC
T ss_pred CeEEEEECCCC---CEEEEEEC
Confidence 89999999988 66666554
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.13 Score=46.09 Aligned_cols=73 Identities=8% Similarity=0.056 Sum_probs=48.2
Q ss_pred EEEEccCCCCCCcEEEEEeCCCe-------------------EEEEEcCCCceeeeeeeccCC-------CCeEEEEEec
Q psy13856 146 DVAWAPSWGLSKCMIASCSQDRK-------------------VIIWTSNDYVTWTPFIMNTFD-------DVVWNVSWSL 199 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~dg~-------------------i~iwd~~~~~~~~~~~~~~h~-------~~v~~v~~~~ 199 (271)
.++++| +..+++.+..++. |..+|.++++..=......|. .+..-.....
T Consensus 239 ~~~~d~----~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~ 314 (689)
T 1yiq_A 239 SFAYDP----ELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPI 314 (689)
T ss_dssp CEEEET----TTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEE
T ss_pred ceeEcC----CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeecc
Confidence 577888 4677888877764 999999998751111222232 1222223334
Q ss_pred CCC---EEEEEECCCcEEEEEeCCCC
Q psy13856 200 TGD---ILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 200 ~g~---~l~s~s~D~~v~iw~~~~~~ 222 (271)
+|. .++.++.+|.++++|..++.
T Consensus 315 ~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 315 DGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp TTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred CCcEEEEEEEECCCCeEEEEECCCCC
Confidence 565 78899999999999998873
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.058 Score=42.08 Aligned_cols=109 Identities=8% Similarity=0.039 Sum_probs=70.1
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEE
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRD 146 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~ 146 (271)
...+.|+ ++.+..+.+.++.|+.+|. .+++.++. + +.. .-.-..
T Consensus 57 tqGL~~~-~~~Ly~stG~~g~v~~iD~---~Tgkv~~~-----------------------------~--l~~-~~FgeG 100 (268)
T 3nok_A 57 TQGLVFH-QGHFFESTGHQGTLRQLSL---ESAQPVWM-----------------------------E--RLG-NIFAEG 100 (268)
T ss_dssp EEEEEEE-TTEEEEEETTTTEEEECCS---SCSSCSEE-----------------------------E--ECT-TCCEEE
T ss_pred cceEEEE-CCEEEEEcCCCCEEEEEEC---CCCcEEeE-----------------------------E--CCC-CcceeE
Confidence 3588887 3567777888889999998 55554331 1 221 111123
Q ss_pred EEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 147 VAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 147 v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
+.... ..+.+..-.++.+.+||..+.+. ...+.. ...-+.++ +++..|+.+..+++|.++|..+.
T Consensus 101 it~~g-----~~Ly~ltw~~~~v~V~D~~Tl~~--~~ti~~-~~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~ 165 (268)
T 3nok_A 101 LASDG-----ERLYQLTWTEGLLFTWSGMPPQR--ERTTRY-SGEGWGLC--YWNGKLVRSDGGTMLTFHEPDGF 165 (268)
T ss_dssp EEECS-----SCEEEEESSSCEEEEEETTTTEE--EEEEEC-SSCCCCEE--EETTEEEEECSSSEEEEECTTTC
T ss_pred EEEeC-----CEEEEEEccCCEEEEEECCcCcE--EEEEeC-CCceeEEe--cCCCEEEEECCCCEEEEEcCCCC
Confidence 55543 45566666789999999998775 333332 22224444 56778877777889999998876
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.17 Score=42.73 Aligned_cols=75 Identities=12% Similarity=0.111 Sum_probs=48.2
Q ss_pred ceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeCC
Q psy13856 143 WVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKENT 220 (271)
Q Consensus 143 ~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~~ 220 (271)
....++++|. ++.++++-..++.|+.+|..++.........+....-..++|+|+|..|..+. ..+.|+.++++.
T Consensus 229 ~P~giavd~~---~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 229 GAKTCAVHPQ---NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNR 304 (433)
T ss_dssp SBCCCEECTT---TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCT
T ss_pred CCCEEEEeCC---CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCC
Confidence 3456888884 47777777678899999987655310111111122335699999998555554 567898888763
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.28 Score=38.95 Aligned_cols=173 Identities=9% Similarity=-0.066 Sum_probs=90.6
Q ss_pred CCCCEEEEccCCCeEEeccc---eeeeccccccccccceEEEEcCCCCeEEEEeCCC--cEEEEEeecCCCCceeecc--
Q psy13856 33 RIGHTLISCDTQAHIGIRST---ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHE--AAKHLGTVQSSSPACLQPK-- 105 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~---~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~--~i~~~d~~~~~~~~~~~~~-- 105 (271)
++|+++++-..++.|..||. .......... +.++++.++++++++..... .+..++. .+++.....
T Consensus 41 ~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~----p~gia~~~dG~l~vad~~~~~~~v~~~d~---~~g~~~~~~~~ 113 (306)
T 2p4o_A 41 PDGTIFVTNHEVGEIVSITPDGNQQIHATVEGK----VSGLAFTSNGDLVATGWNADSIPVVSLVK---SDGTVETLLTL 113 (306)
T ss_dssp TTSCEEEEETTTTEEEEECTTCCEEEEEECSSE----EEEEEECTTSCEEEEEECTTSCEEEEEEC---TTSCEEEEEEC
T ss_pred CCCCEEEEeCCCCeEEEECCCCceEEEEeCCCC----ceeEEEcCCCcEEEEeccCCcceEEEEcC---CCCeEEEEEeC
Confidence 47888888777899999987 2111122234 78999999998666554332 3545554 344332211
Q ss_pred ---ceeeEEE-eeccceee-----eEEEE-eeC-CceEEeEE--------ecCCCcceEEEEEccCCCCCCc-EEEEEeC
Q psy13856 106 ---YFKLTVY-STKLTRIL-----ILVRI-CGG-DKWIEETK--------LENHSDWVRDVAWAPSWGLSKC-MIASCSQ 165 (271)
Q Consensus 106 ---~~~~~~~-~~~~~~l~-----~~v~i-~~~-~~~~~~~~--------~~~h~~~v~~v~~~p~~~~~~~-~l~s~~~ 165 (271)
.++.... ...+..++ +.+.. ... +....... ..+.-.....+ +| ++. ++++-..
T Consensus 114 ~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~----dg~~lyv~d~~ 187 (306)
T 2p4o_A 114 PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KR----FGNFLYVSNTE 187 (306)
T ss_dssp TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EE----ETTEEEEEETT
T ss_pred CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--Cc----CCCEEEEEeCC
Confidence 1111111 11112122 33333 211 11011000 00111233455 66 454 5566666
Q ss_pred CCeEEEEEcCC-CceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 166 DRKVIIWTSND-YVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 166 dg~i~iwd~~~-~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
.+.|..++... +.......+.. ......++++++|+++++....+.|.+++..
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 78999999875 22100111111 1345668899999887777778889999864
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.15 Score=40.87 Aligned_cols=112 Identities=10% Similarity=-0.041 Sum_probs=64.9
Q ss_pred ceEEEEcCCCCeEEEE-eCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceE
Q psy13856 67 NKAGALSPKLNRSATS-SFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVR 145 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~-s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~ 145 (271)
...++|+|+++.|..+ ..++.|..++.. .... +..+....+. + ..
T Consensus 187 p~gia~~~dg~~lyv~d~~~~~I~~~~~~---~~~~---------------------------~~~~~~~~~~---g-P~ 232 (322)
T 2fp8_A 187 PGGAEVSADSSFVLVAEFLSHQIVKYWLE---GPKK---------------------------GTAEVLVKIP---N-PG 232 (322)
T ss_dssp CCEEEECTTSSEEEEEEGGGTEEEEEESS---STTT---------------------------TCEEEEEECS---S-EE
T ss_pred CcceEECCCCCEEEEEeCCCCeEEEEECC---CCcC---------------------------CccceEEeCC---C-CC
Confidence 5689999999865554 566788888862 1110 0101111222 2 56
Q ss_pred EEEEccCCCCCCcEEEEEeC----------CCeEEEEEcCCCceeeeeeeccC----CCCeEEEEEecCCCEEEEEECCC
Q psy13856 146 DVAWAPSWGLSKCMIASCSQ----------DRKVIIWTSNDYVTWTPFIMNTF----DDVVWNVSWSLTGDILTVSCGDN 211 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~----------dg~i~iwd~~~~~~~~~~~~~~h----~~~v~~v~~~~~g~~l~s~s~D~ 211 (271)
.+++++ +|.++++... .+.|..+|.. ++. ...+... -..+..+++ .++.++++....+
T Consensus 233 gi~~d~----~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~--~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~ 304 (322)
T 2fp8_A 233 NIKRNA----DGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNI--LEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHG 304 (322)
T ss_dssp EEEECT----TSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCE--EEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCS
T ss_pred CeEECC----CCCEEEEecCcccccccCCCccEEEEECCC-CCE--EEEEECCCCCccccceEEEE-eCCEEEEeecCCC
Confidence 788888 5777766654 4667888764 443 2333222 234566666 4566665555677
Q ss_pred cEEEEEeCC
Q psy13856 212 SVSLWKENT 220 (271)
Q Consensus 212 ~v~iw~~~~ 220 (271)
.|..+++..
T Consensus 305 ~i~~~~~~~ 313 (322)
T 2fp8_A 305 SVGILVYDK 313 (322)
T ss_dssp EEEEEEC--
T ss_pred ceEEEeccc
Confidence 888888753
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.019 Score=47.41 Aligned_cols=81 Identities=9% Similarity=-0.120 Sum_probs=56.1
Q ss_pred EEeEEecCCCcceEEEEEccCCCCCCcEEEEEe----------CCCeEEEEEcCCCceeeeeeeccC-------CCCeEE
Q psy13856 132 IEETKLENHSDWVRDVAWAPSWGLSKCMIASCS----------QDRKVIIWTSNDYVTWTPFIMNTF-------DDVVWN 194 (271)
Q Consensus 132 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~h-------~~~v~~ 194 (271)
+.+..+.....+ .+.++| |+.++..+. .++.|.+||..+.+. ...+... ......
T Consensus 57 ~v~~~i~vG~~P--~i~~sp----Dg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v--v~~I~v~~~~~~~~g~~P~~ 128 (368)
T 1mda_H 57 VTLGHSLGAFLS--LAVAGH----SGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP--IADIELPDAPRFSVGPRVHI 128 (368)
T ss_dssp EEEEEEEECTTC--EEEECT----TSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE--EEEEEETTSCSCCBSCCTTS
T ss_pred eEEEEEeCCCCC--ceEECC----CCCEEEEEcccccccccCCCCCEEEEEECCCCCE--EEEEECCCccccccCCCcce
Confidence 444444333344 799999 677777765 378999999999876 4444322 123567
Q ss_pred EEEecCCCEEEEEEC--CCcEEE--EEeCC
Q psy13856 195 VSWSLTGDILTVSCG--DNSVSL--WKENT 220 (271)
Q Consensus 195 v~~~~~g~~l~s~s~--D~~v~i--w~~~~ 220 (271)
++++|||++++.+.. +..|.+ +|..+
T Consensus 129 ia~SpDGk~lyVan~~~~~~v~V~~iD~~t 158 (368)
T 1mda_H 129 IGNCASSACLLFFLFGSSAAAGLSVPGASD 158 (368)
T ss_dssp EEECTTSSCEEEEECSSSCEEEEEETTTEE
T ss_pred EEEcCCCCEEEEEccCCCCeEEEEEEchhh
Confidence 899999999998875 457888 88754
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.3 Score=39.37 Aligned_cols=73 Identities=7% Similarity=0.019 Sum_probs=50.1
Q ss_pred ceEEEEEccCCCCCCcEEEEEeCC-CeEEEEEcCCCceeeeeeec----cCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q psy13856 143 WVRDVAWAPSWGLSKCMIASCSQD-RKVIIWTSNDYVTWTPFIMN----TFDDVVWNVSWSLTGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 143 ~v~~v~~~p~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~----~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~ 217 (271)
....++..+ +|+..++++.- +.|...+...... ....+. ...-..+.++++|+|..|++...++.+.-+|
T Consensus 138 ~~nDvavD~----~GnaYVt~s~~~~~I~rV~pdG~~~-~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD 212 (334)
T 2p9w_A 138 GVVQSAQDR----DGNSYVAFALGMPAIARVSADGKTV-STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFD 212 (334)
T ss_dssp EEEEEEECT----TSCEEEEEEESSCEEEEECTTSCCE-EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEE
T ss_pred CCceeEECC----CCCEEEeCCCCCCeEEEEeCCCCEE-eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEc
Confidence 467888988 58888888877 7777666554321 011111 1112367899999999888887799999999
Q ss_pred eCC
Q psy13856 218 ENT 220 (271)
Q Consensus 218 ~~~ 220 (271)
++.
T Consensus 213 ~~~ 215 (334)
T 2p9w_A 213 VSK 215 (334)
T ss_dssp CSS
T ss_pred CCC
Confidence 874
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.99 E-value=0.17 Score=45.31 Aligned_cols=55 Identities=5% Similarity=0.160 Sum_probs=38.8
Q ss_pred CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 165 QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
.+|.|..||..+++. .-... +........+...+.+++.++.|+.|+.||.+++.
T Consensus 436 ~~g~l~A~D~~tG~~--~W~~~-~~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~ 490 (668)
T 1kv9_A 436 VSGALLAWDPVKQKA--AWKVP-YPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGE 490 (668)
T ss_dssp CEEEEEEEETTTTEE--EEEEE-ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred ccceEEEEeCCCCcE--EEEcc-CCCCCcCceeEeCCCEEEEECCcccchhhhhhcCh
Confidence 458899999999874 22222 22233334455678889999999999999998873
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=95.87 E-value=0.14 Score=45.69 Aligned_cols=79 Identities=8% Similarity=0.130 Sum_probs=51.1
Q ss_pred ceEEEEEccCCCCCCcEEEEEeC-CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEE-CC-----CcEEE
Q psy13856 143 WVRDVAWAPSWGLSKCMIASCSQ-DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC-GD-----NSVSL 215 (271)
Q Consensus 143 ~v~~v~~~p~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D-----~~v~i 215 (271)
...++++.+ ++.+++.|+. +..+.+||..+..-.....+.. ...-.+++..++|++++.|+ .+ ..+.+
T Consensus 244 ~~~~~~~~~----~g~lyv~GG~~~~~v~~yd~~t~~W~~~~~~~~-~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~ 318 (656)
T 1k3i_A 244 FCPGISMDG----NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEV 318 (656)
T ss_dssp SSCEEEECT----TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEE
T ss_pred ccccccCCC----CCCEEEeCCCCCCceEEecCcCCceeECCCCCc-cccccceEEecCCeEEEEeCcccCCcccccceE
Confidence 334567777 5888888884 5689999998754211111211 11223455667899999988 44 56999
Q ss_pred EEeCCCCceeEE
Q psy13856 216 WKENTDGAWQCI 227 (271)
Q Consensus 216 w~~~~~~~~~~~ 227 (271)
||+.+ ..|..+
T Consensus 319 yd~~t-~~W~~~ 329 (656)
T 1k3i_A 319 YSPSS-KTWTSL 329 (656)
T ss_dssp EETTT-TEEEEE
T ss_pred eCCCC-CcceeC
Confidence 99875 467765
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.46 Score=36.56 Aligned_cols=162 Identities=9% Similarity=0.030 Sum_probs=90.7
Q ss_pred CCCEEEEccCCC--eEEeccc-----eeeeccccccccccceEEEEcCCCCeEEE-EeCCCcEEEEEeecCCCCceeecc
Q psy13856 34 IGHTLISCDTQA--HIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSAT-SSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 34 ~g~~l~s~s~d~--~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s-~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
++.++.+.+.+| .|+.+|+ +..+.-.. . .......+++..|.. ...++.+.++|. .+.+.+..+
T Consensus 30 ~~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~-~----~fgeGi~~~~~~ly~ltw~~~~v~v~D~---~tl~~~~ti 101 (243)
T 3mbr_X 30 RGHLYESTGETGRSSVRKVDLETGRILQRAEVPP-P----YFGAGIVAWRDRLIQLTWRNHEGFVYDL---ATLTPRARF 101 (243)
T ss_dssp TTEEEEEECCTTSCEEEEEETTTCCEEEEEECCT-T----CCEEEEEEETTEEEEEESSSSEEEEEET---TTTEEEEEE
T ss_pred CCEEEEECCCCCCceEEEEECCCCCEEEEEeCCC-C----cceeEEEEeCCEEEEEEeeCCEEEEEEC---CcCcEEEEE
Confidence 466777777754 8999998 22222111 1 333333333454444 447888999998 777777766
Q ss_pred ceee--EEEeeccceee-----eEEEEeeCCceEEeEEecC--CC---cceEEEEEccCCCCCCcEEEEEeCCCeEEEEE
Q psy13856 106 YFKL--TVYSTKLTRIL-----ILVRICGGDKWIEETKLEN--HS---DWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT 173 (271)
Q Consensus 106 ~~~~--~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~--h~---~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd 173 (271)
.++. .-.+.+++.+. +.+.+.+...++....+.- +. ..++.+.|.. +..++..-.+..|.+.|
T Consensus 102 ~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~~-----G~lyanvw~s~~I~vID 176 (243)
T 3mbr_X 102 RYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWVN-----GELLANVWLTSRIARID 176 (243)
T ss_dssp ECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEET-----TEEEEEETTTTEEEEEC
T ss_pred eCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEeC-----CEEEEEECCCCeEEEEE
Confidence 3321 11223344333 5555533332244444322 22 2345566653 67777776788999999
Q ss_pred cCCCceeeeeeecc-----------CCCCeEEEEEecCCCEEEEEE
Q psy13856 174 SNDYVTWTPFIMNT-----------FDDVVWNVSWSLTGDILTVSC 208 (271)
Q Consensus 174 ~~~~~~~~~~~~~~-----------h~~~v~~v~~~~~g~~l~s~s 208 (271)
.++++....-.+.+ -.+..+.++++|++..|+..+
T Consensus 177 p~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 177 PASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp TTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred CCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 99987521112111 123568999999876665554
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.19 Score=43.87 Aligned_cols=52 Identities=8% Similarity=0.002 Sum_probs=34.4
Q ss_pred eEEEEEcCC--CceeeeeeeccCCCCeEEEEEecCCCEEEEEEC-CCcEEEEEeCCC
Q psy13856 168 KVIIWTSND--YVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG-DNSVSLWKENTD 221 (271)
Q Consensus 168 ~i~iwd~~~--~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-D~~v~iw~~~~~ 221 (271)
.|.+.|.++ +..+ ...+. -.....++.++|||+++++++. +.+|.++|+.+.
T Consensus 255 ~V~VID~~~~~~~~~-~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~ 309 (595)
T 1fwx_A 255 GVKVVDGRKEASSLF-TRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRF 309 (595)
T ss_dssp TEEEEECSGGGCCSS-EEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGH
T ss_pred cEEEEeCcccCCcee-EEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECccc
Confidence 477888776 3220 11111 1224567899999998877764 789999999843
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.73 E-value=0.76 Score=38.48 Aligned_cols=136 Identities=8% Similarity=-0.057 Sum_probs=80.1
Q ss_pred cceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceE
Q psy13856 66 SNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVR 145 (271)
Q Consensus 66 ~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~ 145 (271)
+|..+..+|+|++||..+. ..|.+..+..+.....-........+ ....+ +..+ .....+|.
T Consensus 67 ~i~qlvlSpsG~lLAl~g~-~~V~Vv~LP~~~~~~~~~~~~~~~q~---------~ty~l---~~~~-----~~~~s~I~ 128 (452)
T 3pbp_A 67 DTFHVISSTSGDLLCLFND-NEIFVMEVPWGYSNVEDVSIQDAFQI---------FHYSI---DEEE-----VGPKSSIK 128 (452)
T ss_dssp TTCEEEECTTSSEEEEECS-SEEEEEECCTTCSCCCCHHHHHTTEE---------EEEEG---GGCC-------CCCCEE
T ss_pred ceeEEEECCCCCEEEEecC-CeEEEEEecCccccCcccccccccce---------eEEEc---CCcc-----cCCCCcee
Confidence 4788999999999988854 57778887422111110000000000 00000 0000 11367899
Q ss_pred EEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeee---------ccCCCCeEEEEEecCCCEEEEEE--CCCcEE
Q psy13856 146 DVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIM---------NTFDDVVWNVSWSLTGDILTVSC--GDNSVS 214 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---------~~h~~~v~~v~~~~~g~~l~s~s--~D~~v~ 214 (271)
.+.|+|... .+..|++-..|+.|++||+......+. .+ ......|.+++|..++-.|...+ ..|.|+
T Consensus 129 qVlWHPl~~-~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIY 206 (452)
T 3pbp_A 129 KVLFHPKSY-RDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIF 206 (452)
T ss_dssp EEEECTTBG-GGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEE
T ss_pred EEEeccccC-CCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEE
Confidence 999999521 245788888999999999986322111 22 12235788999999887777755 778887
Q ss_pred EEEeCCC
Q psy13856 215 LWKENTD 221 (271)
Q Consensus 215 iw~~~~~ 221 (271)
-..+--.
T Consensus 207 AlcP~LP 213 (452)
T 3pbp_A 207 AFYPFLP 213 (452)
T ss_dssp EESSCCC
T ss_pred EECCCCc
Confidence 6655433
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.81 Score=39.19 Aligned_cols=73 Identities=7% Similarity=0.010 Sum_probs=48.6
Q ss_pred EEEEEccCCCCCCcEEEEEeCCCeEEEEEcC-------CCceee----------eeee-ccCCCCeEEEEEecCCCEEEE
Q psy13856 145 RDVAWAPSWGLSKCMIASCSQDRKVIIWTSN-------DYVTWT----------PFIM-NTFDDVVWNVSWSLTGDILTV 206 (271)
Q Consensus 145 ~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~~~----------~~~~-~~h~~~v~~v~~~~~g~~l~s 206 (271)
..++.+|. ++.++++-..++.|..+|+. ++..|. ...+ .+.....+.++|+|+|.+|..
T Consensus 250 ~giavdp~---~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYv 326 (496)
T 3kya_A 250 NGATIHPI---NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYF 326 (496)
T ss_dssp CCEEECTT---TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEE
T ss_pred eEEEEcCC---CCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEE
Confidence 46788995 57777788888999999987 443210 0111 122345678999999996555
Q ss_pred EE-CCCcEEEEEeCC
Q psy13856 207 SC-GDNSVSLWKENT 220 (271)
Q Consensus 207 ~s-~D~~v~iw~~~~ 220 (271)
+. ..+.|+.++++.
T Consensus 327 aD~~~h~I~kid~dg 341 (496)
T 3kya_A 327 GVINNHYFMRSDYDE 341 (496)
T ss_dssp EETTTTEEEEEEEET
T ss_pred EeCCCCEEEEEecCC
Confidence 54 567888877653
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.62 E-value=0.74 Score=37.61 Aligned_cols=86 Identities=8% Similarity=0.042 Sum_probs=53.0
Q ss_pred EEeEEecCC-CcceEEEEEccCCCCCCcEEEEEe-----------------CCCeEEEEEcCCCceeeeeeeccCCCCeE
Q psy13856 132 IEETKLENH-SDWVRDVAWAPSWGLSKCMIASCS-----------------QDRKVIIWTSNDYVTWTPFIMNTFDDVVW 193 (271)
Q Consensus 132 ~~~~~~~~h-~~~v~~v~~~p~~~~~~~~l~s~~-----------------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~ 193 (271)
..+..+.+. -...+.+.+.+ +|.+.++.. ..|.+..+|. ++ ...+...-...+
T Consensus 154 ~~~~~~~g~~~~~pND~~v~~----~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~--~~---~~~~~~~l~~pN 224 (355)
T 3sre_A 154 LHLKTIRHKLLPSVNDIVAVG----PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--ND---VRVVAEGFDFAN 224 (355)
T ss_dssp EEEEEECCTTCSSEEEEEEEE----TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT--TC---CEEEEEEESSEE
T ss_pred EEEeccccCCCCCCceEEEeC----CCCEEecCCcEeCCcccccchhhccCCccEEEEEEC--Ce---EEEeecCCcccC
Confidence 344444433 23567888888 577776654 1244555544 33 233322234578
Q ss_pred EEEEecCCCEEEEEE-CCCcEEEEEeCCCCceeE
Q psy13856 194 NVSWSLTGDILTVSC-GDNSVSLWKENTDGAWQC 226 (271)
Q Consensus 194 ~v~~~~~g~~l~s~s-~D~~v~iw~~~~~~~~~~ 226 (271)
.++|+||++.|..+. ..+.|..|+++.++....
T Consensus 225 Gia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~ 258 (355)
T 3sre_A 225 GINISPDGKYVYIAELLAHKIHVYEKHANWTLTP 258 (355)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred cceECCCCCEEEEEeCCCCeEEEEEECCCCcEec
Confidence 999999998777665 478899999976554443
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.59 E-value=0.8 Score=37.79 Aligned_cols=74 Identities=8% Similarity=-0.048 Sum_probs=47.2
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCC-CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeC
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQD-RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKEN 219 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~ 219 (271)
.....++++|. ++.++.+-... +.|...++..... .......-...+.++|+|++..|..+. ..+.|..++++
T Consensus 202 ~~P~giavdp~---~g~ly~td~~~~~~I~r~~~dG~~~--~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~d 276 (386)
T 3v65_B 202 EKPRAIALHPM---EGTIYWTDWGNTPRIEASSMDGSGR--RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 276 (386)
T ss_dssp SCEEEEEEETT---TTEEEEEECSSSCEEEEEETTSCSC--EEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTT
T ss_pred CCCcEEEEEcC---CCeEEEeccCCCCEEEEEeCCCCCc--EEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 45678999985 45555555555 7888888765432 222223334578899998766555554 46678888875
Q ss_pred C
Q psy13856 220 T 220 (271)
Q Consensus 220 ~ 220 (271)
.
T Consensus 277 G 277 (386)
T 3v65_B 277 G 277 (386)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.75 Score=37.38 Aligned_cols=74 Identities=8% Similarity=-0.048 Sum_probs=47.7
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCC-CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeC
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQD-RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKEN 219 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~ 219 (271)
.....++++|. ++.++.+-... +.|...++..... .......-...+.++++|++..|..+. ..+.|..++++
T Consensus 159 ~~P~~iavdp~---~g~ly~td~~~~~~I~r~~~dG~~~--~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~d 233 (349)
T 3v64_C 159 EKPRAIALHPM---EGTIYWTDWGNTPRIEASSMDGSGR--RIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLD 233 (349)
T ss_dssp SCEEEEEEETT---TTEEEEEECSSSCEEEEEETTSCSC--EESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCcceEEEecC---cCeEEEeccCCCCEEEEEeCCCCCc--EEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCC
Confidence 45678999985 45666665555 7888888765432 122222234578899998766655554 45678888876
Q ss_pred C
Q psy13856 220 T 220 (271)
Q Consensus 220 ~ 220 (271)
.
T Consensus 234 G 234 (349)
T 3v64_C 234 G 234 (349)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=95.28 E-value=1.4 Score=39.41 Aligned_cols=74 Identities=7% Similarity=0.076 Sum_probs=48.1
Q ss_pred EEEEEccCCCCCCcEEEEEeCCC-------------------eEEEEEcCCCceeeeeeeccCC-------CCeEEEEEe
Q psy13856 145 RDVAWAPSWGLSKCMIASCSQDR-------------------KVIIWTSNDYVTWTPFIMNTFD-------DVVWNVSWS 198 (271)
Q Consensus 145 ~~v~~~p~~~~~~~~l~s~~~dg-------------------~i~iwd~~~~~~~~~~~~~~h~-------~~v~~v~~~ 198 (271)
..++++| +..++..+..++ .|..+|.++++..=......|. .+.....+.
T Consensus 233 ~~~a~d~----~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~ 308 (668)
T 1kv9_A 233 DSMAYDP----ELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELN 308 (668)
T ss_dssp SCEEEET----TTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEE
T ss_pred cceEEcC----CCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEec
Confidence 3577888 466777776665 4999999988741112222232 233333344
Q ss_pred cCCC---EEEEEECCCcEEEEEeCCCC
Q psy13856 199 LTGD---ILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 199 ~~g~---~l~s~s~D~~v~iw~~~~~~ 222 (271)
.+|+ .++.++.+|.++++|..++.
T Consensus 309 ~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 309 IDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp ETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 4665 68889999999999998873
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.26 E-value=0.85 Score=36.62 Aligned_cols=143 Identities=6% Similarity=-0.010 Sum_probs=77.1
Q ss_pred CCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
..+++.+++.+...+..+-+|- ...-...... +..+++.++++.+ .++.++.++.... ..+
T Consensus 170 ~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~~~~~~~----~~~~~~~~~g~~~-~~~~~G~~~~s~~---D~G------ 235 (327)
T 2xbg_A 170 RSPSGEYVAVSSRGSFYSTWEPGQTAWEPHNRTTSRR----LHNMGFTPDGRLW-MIVNGGKIAFSDP---DNS------ 235 (327)
T ss_dssp ECTTSCEEEEETTSSEEEEECTTCSSCEEEECCSSSC----EEEEEECTTSCEE-EEETTTEEEEEET---TEE------
T ss_pred EcCCCcEEEEECCCcEEEEeCCCCCceeECCCCCCCc----cceeEECCCCCEE-EEeCCceEEEecC---CCC------
Confidence 3456777776655444444442 1111122333 6788888887655 4556777655421 001
Q ss_pred ceeeEEEeeccceeeeEEEEeeCCceEEeEEe-cCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeee
Q psy13856 106 YFKLTVYSTKLTRILILVRICGGDKWIEETKL-ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFI 184 (271)
Q Consensus 106 ~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~-~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 184 (271)
..|..+..- ..+...+.++.+.| ++.+++.+. ++.+ .+....+..|....
T Consensus 236 -----------------------~tW~~~~~~~~~~~~~~~~v~~~~----~~~~~~~g~-~g~i-~~S~DgG~tW~~~~ 286 (327)
T 2xbg_A 236 -----------------------ENWGELLSPLRRNSVGFLDLAYRT----PNEVWLAGG-AGAL-LCSQDGGQTWQQDV 286 (327)
T ss_dssp -----------------------EEECCCBCTTSSCCSCEEEEEESS----SSCEEEEES-TTCE-EEESSTTSSCEECG
T ss_pred -----------------------CeeEeccCCcccCCcceEEEEecC----CCEEEEEeC-CCeE-EEeCCCCcccEEcC
Confidence 111211110 01224578899987 466666654 6766 45556666653222
Q ss_pred e-ccCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q psy13856 185 M-NTFDDVVWNVSWSLTGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 185 ~-~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~ 217 (271)
. ..+...++++.|.+++. ++.++.+|.|.-++
T Consensus 287 ~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~ 319 (327)
T 2xbg_A 287 DVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYV 319 (327)
T ss_dssp GGTTSSSCCCEEEEEETTE-EEEECSTTEEEEEC
T ss_pred ccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEc
Confidence 1 12345788899976555 55666788776554
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.17 E-value=1 Score=36.53 Aligned_cols=79 Identities=5% Similarity=-0.037 Sum_probs=48.5
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.....++++|. ++.+..+-...+.|..+|+..... ...+.........+++ ..+.++.+-...+.|..++..++
T Consensus 203 ~~PnGla~d~~---~~~lY~aD~~~~~I~~~~~dG~~~--~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 276 (349)
T 3v64_C 203 FWPNGLTIDYA---GRRMYWVDAKHHVIERANLDGSHR--KAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 276 (349)
T ss_dssp SCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCSC--EEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CCcceEEEeCC---CCEEEEEECCCCEEEEEeCCCCce--EEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence 45678999985 455666666678899999875432 2223333345667777 34555555556778888875455
Q ss_pred CceeE
Q psy13856 222 GAWQC 226 (271)
Q Consensus 222 ~~~~~ 226 (271)
.....
T Consensus 277 ~~~~~ 281 (349)
T 3v64_C 277 KNQEI 281 (349)
T ss_dssp CSCEE
T ss_pred CccEE
Confidence 33333
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.11 E-value=1.2 Score=36.81 Aligned_cols=79 Identities=5% Similarity=-0.037 Sum_probs=48.9
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.....|+++|. ++.+..+-+..+.|..+|+..... ...+.........+++ ..+.++.+....+.|..++..++
T Consensus 246 ~~PnGlavd~~---~~~lY~aD~~~~~I~~~d~dG~~~--~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G 319 (386)
T 3v65_B 246 FWPNGLTIDYA---GRRMYWVDAKHHVIERANLDGSHR--KAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG 319 (386)
T ss_dssp SCEEEEEEEGG---GTEEEEEETTTTEEEEECTTSCSC--EEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred CCeeeEEEeCC---CCEEEEEECCCCEEEEEeCCCCee--EEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence 45678999984 455556666678899999865432 2223333345677777 44555556556778888885555
Q ss_pred CceeE
Q psy13856 222 GAWQC 226 (271)
Q Consensus 222 ~~~~~ 226 (271)
.....
T Consensus 320 ~~~~~ 324 (386)
T 3v65_B 320 KNQEI 324 (386)
T ss_dssp CSCEE
T ss_pred cceEE
Confidence 43333
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.95 Score=35.08 Aligned_cols=155 Identities=12% Similarity=-0.026 Sum_probs=86.9
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeecccc-----ccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCcee
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSV-----YLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACL 102 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~-----~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~ 102 (271)
+++.++++.-.++.+.++++ +....... ...-...-+++|+|.++.|.++.......+|..........+
T Consensus 79 ~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l 158 (255)
T 3qqz_A 79 GDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNEL 158 (255)
T ss_dssp STTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCC
T ss_pred CCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCce
Confidence 57777666656677777765 11111110 000111468999999888877776666667766200000000
Q ss_pred eccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeee
Q psy13856 103 QPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP 182 (271)
Q Consensus 103 ~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 182 (271)
. +..... .. -..+-....+++++|. .+.+++.....+.+..+|.... ....
T Consensus 159 ~---------------------i~~~~~--~~--~~~~~~d~S~l~~dp~---tg~lliLS~~s~~L~~~d~~g~-~~~~ 209 (255)
T 3qqz_A 159 H---------------------ISKDKA--LQ--RQFTLDDVSGAEFNQQ---KNTLLVLSHESRALQEVTLVGE-VIGE 209 (255)
T ss_dssp E---------------------EEECHH--HH--HTCCSSCCCEEEEETT---TTEEEEEETTTTEEEEECTTCC-EEEE
T ss_pred e---------------------eecchh--hc--cccccCCceeEEEcCC---CCeEEEEECCCCeEEEEcCCCC-EEEE
Confidence 0 000000 00 0012234689999997 7888888888999999997643 3222
Q ss_pred eeec-cC------CCCeEEEEEecCCCEEEEEECCCcEEEEE
Q psy13856 183 FIMN-TF------DDVVWNVSWSLTGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 183 ~~~~-~h------~~~v~~v~~~~~g~~l~s~s~D~~v~iw~ 217 (271)
..+. +. -...-.|+|.++|++.+ .++-+.++.+.
T Consensus 210 ~~L~~g~~~l~~~~~qpEGia~d~~G~lyI-vsE~n~~y~f~ 250 (255)
T 3qqz_A 210 MSLTKGSRGLSHNIKQAEGVAMDASGNIYI-VSEPNRFYRFT 250 (255)
T ss_dssp EECSTTGGGCSSCCCSEEEEEECTTCCEEE-EETTTEEEEEE
T ss_pred EEcCCccCCcccccCCCCeeEECCCCCEEE-EcCCceEEEEE
Confidence 2333 21 12557899999998544 46666555554
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.74 E-value=1.2 Score=35.00 Aligned_cols=73 Identities=19% Similarity=0.195 Sum_probs=41.8
Q ss_pred CcEEEEEeCC-----CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC-----CcEEEEEeCCCCceeE
Q psy13856 157 KCMIASCSQD-----RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD-----NSVSLWKENTDGAWQC 226 (271)
Q Consensus 157 ~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-----~~v~iw~~~~~~~~~~ 226 (271)
+.+++.|+.+ ..+.+||..+..-.....+.........+. .++.+++.|+.+ ..+.+||+.+ ..|..
T Consensus 207 ~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~-~~W~~ 283 (301)
T 2vpj_A 207 DHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV--LRGRLYAIAGYDGNSLLSSIECYDPII-DSWEV 283 (301)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBEEEEEEEETTT-TEEEE
T ss_pred CEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE--ECCEEEEEcCcCCCcccccEEEEcCCC-CeEEE
Confidence 5677777764 468899988754211111111111112222 366777777765 3578888875 47888
Q ss_pred EEEecc
Q psy13856 227 ITEMGK 232 (271)
Q Consensus 227 ~~~~~~ 232 (271)
+..+..
T Consensus 284 ~~~~~~ 289 (301)
T 2vpj_A 284 VTSMGT 289 (301)
T ss_dssp EEEEEE
T ss_pred cCCCCc
Confidence 766543
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.55 E-value=1.2 Score=34.43 Aligned_cols=84 Identities=6% Similarity=0.145 Sum_probs=60.1
Q ss_pred EEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEE
Q psy13856 135 TKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVS 214 (271)
Q Consensus 135 ~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~ 214 (271)
+.+.+-.+.+..++|+|. ++.+++....++.|...|.. ++.+....+.+. ...-.+++.+++.++++.-.++.+.
T Consensus 20 ~~l~g~~~~lSGla~~~~---~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~-~D~EGIa~~~~g~~~vs~E~~~~l~ 94 (255)
T 3qqz_A 20 KEIAGITNNISSLTWSAQ---SNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFV-KDLETIEYIGDNQFVISDERDYAIY 94 (255)
T ss_dssp EECTTCCSCEEEEEEETT---TTEEEEEEETTEEEEEEETT-CCEEEEEECSSC-SSEEEEEECSTTEEEEEETTTTEEE
T ss_pred eECCCcccCcceeEEeCC---CCEEEEEECCCCeEEEEeCC-CCEEEEEecCCC-CChHHeEEeCCCEEEEEECCCCcEE
Confidence 345566678999999995 45677778889999999987 554212222332 4577788888888777665678999
Q ss_pred EEEeCCCCc
Q psy13856 215 LWKENTDGA 223 (271)
Q Consensus 215 iw~~~~~~~ 223 (271)
++++...+.
T Consensus 95 ~~~v~~~~~ 103 (255)
T 3qqz_A 95 VISLTPNSE 103 (255)
T ss_dssp EEEECTTCC
T ss_pred EEEcCCCCe
Confidence 999887654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=94.29 E-value=0.34 Score=43.61 Aligned_cols=81 Identities=7% Similarity=-0.037 Sum_probs=47.2
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeec--cCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMN--TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
.....|+++|. .+.++++-+..+.|..+++..... ...+. ........+++..+ .++++....+.|..++..
T Consensus 540 ~~PnGlavd~~---~~~LY~aD~~~~~I~~~d~dG~~~--~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~ 613 (699)
T 1n7d_A 540 QWPNGITLDLL---SGRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL 613 (699)
T ss_dssp SSCCCEEECTT---TCCEEEEETTTTEEEEECSSSSCC--EEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred CCccEEEEecc---CCEEEEEecCCCeEEEEccCCCce--EEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence 34567999985 456666666778899999865332 11221 11122344555443 444455556789988876
Q ss_pred CCCceeEEEEec
Q psy13856 220 TDGAWQCITEMG 231 (271)
Q Consensus 220 ~~~~~~~~~~~~ 231 (271)
++ +.+..+.
T Consensus 614 ~G---~~~~~i~ 622 (699)
T 1n7d_A 614 TG---SDVNLLA 622 (699)
T ss_dssp TE---EEEECCC
T ss_pred CC---CceEEee
Confidence 55 4444443
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=94.12 E-value=1.7 Score=34.31 Aligned_cols=112 Identities=12% Similarity=-0.032 Sum_probs=65.0
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEE
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRD 146 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~ 146 (271)
..+++|+++++.+++-..++.|..++. . +.. ..... -......
T Consensus 34 pegia~~~~g~lyv~d~~~~~I~~~d~---~-g~~------------------------------~~~~~---~~~~p~g 76 (306)
T 2p4o_A 34 LENLASAPDGTIFVTNHEVGEIVSITP---D-GNQ------------------------------QIHAT---VEGKVSG 76 (306)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECT---T-CCE------------------------------EEEEE---CSSEEEE
T ss_pred cceEEECCCCCEEEEeCCCCeEEEECC---C-Cce------------------------------EEEEe---CCCCcee
Confidence 578999999987777667788877774 1 111 11111 1235778
Q ss_pred EEEccCCCCCCcEEEEEeC-CC-eEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 147 VAWAPSWGLSKCMIASCSQ-DR-KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 147 v~~~p~~~~~~~~l~s~~~-dg-~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
+++++ +++++++... ++ .|..+|..+++....... ........++..+++..+++...++.|+.+|...
T Consensus 77 ia~~~----dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~-~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~ 147 (306)
T 2p4o_A 77 LAFTS----NGDLVATGWNADSIPVVSLVKSDGTVETLLTL-PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQ 147 (306)
T ss_dssp EEECT----TSCEEEEEECTTSCEEEEEECTTSCEEEEEEC-TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcC----CCcEEEEeccCCcceEEEEcCCCCeEEEEEeC-CCccccCcccccCCCcEEEEECCCCeEEEEeCCC
Confidence 99999 5776665543 23 466677666653111111 1122334555555555555554578888888653
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.01 E-value=1.8 Score=34.08 Aligned_cols=74 Identities=9% Similarity=-0.040 Sum_probs=42.7
Q ss_pred CcEEEEEeCC-----CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC-----CcEEEEEeCCCCceeE
Q psy13856 157 KCMIASCSQD-----RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD-----NSVSLWKENTDGAWQC 226 (271)
Q Consensus 157 ~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-----~~v~iw~~~~~~~~~~ 226 (271)
+.+++.|+.+ ..+.+||..+..-.....+.........+.+ ++.+++.|+.+ ..+.+||+.+ ..|..
T Consensus 201 ~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~-~~W~~ 277 (306)
T 3ii7_A 201 DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTET-DKWVA 277 (306)
T ss_dssp TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTT-TEEEE
T ss_pred CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCC-CeEEe
Confidence 5667776653 3588899887542111111111112222222 66777888754 4688899875 48998
Q ss_pred EEEeccc
Q psy13856 227 ITEMGKT 233 (271)
Q Consensus 227 ~~~~~~~ 233 (271)
+..+...
T Consensus 278 ~~~~~~~ 284 (306)
T 3ii7_A 278 NSKVRAF 284 (306)
T ss_dssp EEEEECC
T ss_pred CCCcccc
Confidence 8776543
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.93 E-value=1.8 Score=33.95 Aligned_cols=69 Identities=19% Similarity=0.264 Sum_probs=38.4
Q ss_pred CcEEEEEeCC-----CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCC-----cEEEEEeCCCCceeE
Q psy13856 157 KCMIASCSQD-----RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDN-----SVSLWKENTDGAWQC 226 (271)
Q Consensus 157 ~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~-----~v~iw~~~~~~~~~~ 226 (271)
+.+++.|+.+ ..+.+||..+..-.....+.........+ ..++.+++.|+.++ .+.+||+.++ .|..
T Consensus 205 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~v~~yd~~~~-~W~~ 281 (302)
T 2xn4_A 205 NLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC--AVNGLLYVVGGDDGSCNLASVEYYNPTTD-KWTV 281 (302)
T ss_dssp TEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--EETTEEEEECCBCSSSBCCCEEEEETTTT-EEEE
T ss_pred CEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE--EECCEEEEECCcCCCcccccEEEEcCCCC-eEEE
Confidence 5677777764 36889998875421111111111111112 23667777777553 4889998754 6766
Q ss_pred EE
Q psy13856 227 IT 228 (271)
Q Consensus 227 ~~ 228 (271)
+.
T Consensus 282 ~~ 283 (302)
T 2xn4_A 282 VS 283 (302)
T ss_dssp CS
T ss_pred CC
Confidence 43
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=93.72 E-value=2.1 Score=34.05 Aligned_cols=74 Identities=14% Similarity=-0.093 Sum_probs=46.1
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCC-CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeC
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQD-RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKEN 219 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~ 219 (271)
.....++++|. ++.++.+.... +.|...++..... .......-...+.+++++++..|..+. ..+.|..++++
T Consensus 120 ~~P~~iavdp~---~g~ly~~d~~~~~~I~~~~~dG~~~--~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~d 194 (316)
T 1ijq_A 120 SKPRAIVVDPV---HGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 194 (316)
T ss_dssp CCEEEEEEETT---TTEEEEEECSSSCEEEEEETTSCCE--EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCcceEEeCCC---CCEEEEEccCCCCeEEEEcCCCCCe--EEEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecC
Confidence 45678999985 45555554443 6788888754331 112222234678899998766665554 45688888876
Q ss_pred C
Q psy13856 220 T 220 (271)
Q Consensus 220 ~ 220 (271)
.
T Consensus 195 g 195 (316)
T 1ijq_A 195 G 195 (316)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=93.71 E-value=2.1 Score=34.04 Aligned_cols=79 Identities=8% Similarity=-0.044 Sum_probs=48.7
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeec--cCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMN--TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
.....++++|. ++.+..+-...+.|..+|+..... ..... ........+++. .+.++.+....+.|..++..
T Consensus 164 ~~P~gla~d~~---~~~lY~~D~~~~~I~~~d~dg~~~--~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~~ 237 (316)
T 1ijq_A 164 QWPNGITLDLL---SGRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 237 (316)
T ss_dssp SCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCSC--EEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred CCceEEEEecc---CCEEEEEECCCCeEEEEecCCCce--EEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeCC
Confidence 45678999984 355556666678999999875332 11222 122345677774 35555555567889988876
Q ss_pred CCCceeE
Q psy13856 220 TDGAWQC 226 (271)
Q Consensus 220 ~~~~~~~ 226 (271)
++.....
T Consensus 238 ~g~~~~~ 244 (316)
T 1ijq_A 238 TGSDVNL 244 (316)
T ss_dssp TCCCCEE
T ss_pred CCcceEE
Confidence 5543333
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=93.66 E-value=1.5 Score=36.70 Aligned_cols=73 Identities=10% Similarity=0.074 Sum_probs=53.5
Q ss_pred ceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce----------eeeeeecc------CCCCeEEEEEecC---CCE
Q psy13856 143 WVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT----------WTPFIMNT------FDDVVWNVSWSLT---GDI 203 (271)
Q Consensus 143 ~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~----------~~~~~~~~------h~~~v~~v~~~~~---g~~ 203 (271)
.|..+..+| +|.+||..+ +..|.|-.+..+.. .....+.- ...+|..+.|+|- +..
T Consensus 67 ~i~qlvlSp----sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~ 141 (452)
T 3pbp_A 67 DTFHVISST----SGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSC 141 (452)
T ss_dssp TTCEEEECT----TSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCE
T ss_pred ceeEEEECC----CCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCe
Confidence 577899999 699998887 55788888763221 11112221 2467999999995 578
Q ss_pred EEEEECCCcEEEEEeCC
Q psy13856 204 LTVSCGDNSVSLWKENT 220 (271)
Q Consensus 204 l~s~s~D~~v~iw~~~~ 220 (271)
|++-..|++|++||+..
T Consensus 142 LVVLtsD~~Ir~yDl~~ 158 (452)
T 3pbp_A 142 IVVLKEDDTITMFDILN 158 (452)
T ss_dssp EEEEETTSCEEEEETTC
T ss_pred EEEEecCCEEEEEEccc
Confidence 99999999999999985
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=93.51 E-value=0.67 Score=40.57 Aligned_cols=55 Identities=5% Similarity=0.015 Sum_probs=36.0
Q ss_pred CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 165 QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
.++.+..||..+++. .-... +...+....+...+..++.++.|+.|+.||.+++.
T Consensus 442 ~~g~l~a~D~~tG~~--~W~~~-~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~ 496 (571)
T 2ad6_A 442 EMGQIRAFDLTTGKA--KWTKW-EKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGK 496 (571)
T ss_dssp CCEEEEEECTTTCCE--EEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CCCeEEEEECCCCCE--EEEec-CCCCccceeEEECCCEEEEEcCCCeEEEEECCCCC
Confidence 358899999988774 22222 12222222233446677789999999999998873
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.24 E-value=4.8 Score=36.72 Aligned_cols=74 Identities=14% Similarity=-0.093 Sum_probs=44.7
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCC-CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeC
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQD-RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKEN 219 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~ 219 (271)
.....|+++|. .+.++.+-... +.|...++..... ...+...-...+.|++++.+..|+.+. ..+.|...+++
T Consensus 514 ~~P~gIaVDp~---~g~LYwtD~g~~~~I~~~~~dG~~~--~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~d 588 (791)
T 3m0c_C 514 SKPRAIVVDPV---HGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 588 (791)
T ss_dssp CCEEEEEEETT---TTEEEEEECSSSCEEEEEETTSCCE--EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCcceEEEecC---CCCEEEecCCCCCeEEEEecCCCce--EEEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecC
Confidence 45678889884 34554444333 6788888765432 222333335678889987666555554 35567777765
Q ss_pred C
Q psy13856 220 T 220 (271)
Q Consensus 220 ~ 220 (271)
.
T Consensus 589 G 589 (791)
T 3m0c_C 589 G 589 (791)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=93.07 E-value=2.8 Score=33.50 Aligned_cols=74 Identities=16% Similarity=-0.050 Sum_probs=43.7
Q ss_pred cceEEEEEccCCCCCCcEEEEEe-CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeC
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCS-QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKEN 219 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~ 219 (271)
.....++++|. .+.++.+-. ..+.|...++..... .......-...+.++++|++..|..+. ..+.|..++++
T Consensus 122 ~~P~giavdp~---~g~ly~td~~~~~~I~r~~~dG~~~--~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~d 196 (318)
T 3sov_A 122 DQPRAIALDPS---SGFMYWTDWGEVPKIERAGMDGSSR--FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLD 196 (318)
T ss_dssp SSEEEEEEEGG---GTEEEEEECSSSCEEEEEETTSCSC--EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCccEEEEeCC---CCEEEEEecCCCCEEEEEEcCCCCe--EEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCC
Confidence 45578888884 344444432 357788887764331 122222234567899998665555554 46678888875
Q ss_pred C
Q psy13856 220 T 220 (271)
Q Consensus 220 ~ 220 (271)
.
T Consensus 197 G 197 (318)
T 3sov_A 197 G 197 (318)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=93.03 E-value=4.4 Score=35.65 Aligned_cols=55 Identities=11% Similarity=0.060 Sum_probs=34.7
Q ss_pred CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 165 QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
.+|.+..||..+++. .-... +..++..-.....+..++.++.|+.++.||.+++.
T Consensus 451 ~~G~l~A~D~~tG~~--~W~~~-~~~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~ 505 (599)
T 1w6s_A 451 GLGQIKAYNAITGDY--KWEKM-ERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGD 505 (599)
T ss_dssp CCEEEEEECTTTCCE--EEEEE-ESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred CcCeEEEEECCCCCE--EeEec-CCCCccCcceEecCCEEEEECCCCeEEEEECCCCC
Confidence 357888999988774 11111 11122111123356778889999999999999884
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=92.84 E-value=3.3 Score=33.76 Aligned_cols=73 Identities=15% Similarity=0.227 Sum_probs=46.4
Q ss_pred cceEEEEEccCCCCCCcEEEE-EeCCCeEEEEEcCCC-ceeeeeeeccCCCCeEEEEEec-CCCEEEEEECC-CcEEEEE
Q psy13856 142 DWVRDVAWAPSWGLSKCMIAS-CSQDRKVIIWTSNDY-VTWTPFIMNTFDDVVWNVSWSL-TGDILTVSCGD-NSVSLWK 217 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s-~~~dg~i~iwd~~~~-~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D-~~v~iw~ 217 (271)
..-+.++|+| |++.+.. -+..+.|..|++... .......+ ...+..-.++..+ +|++.+++..+ +.|..|+
T Consensus 221 ~~pNGia~sp----Dg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 221 DFANGINISP----DGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp SSEEEEEECT----TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESCHHHHHSCC
T ss_pred cccCcceECC----CCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCCceEEEEEC
Confidence 3457899999 6765544 446789999998743 22112233 3345677889999 59988766644 3444444
Q ss_pred eC
Q psy13856 218 EN 219 (271)
Q Consensus 218 ~~ 219 (271)
..
T Consensus 296 P~ 297 (355)
T 3sre_A 296 AE 297 (355)
T ss_dssp TT
T ss_pred CC
Confidence 43
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.72 E-value=2.1 Score=35.94 Aligned_cols=75 Identities=12% Similarity=0.044 Sum_probs=40.9
Q ss_pred CCcceEEEEEccCCCCCCcEEEEEeC-CC----eEEEEEcCCCceeeeeeeccCCCCeEEEEEec-CCCEEEEEECCCcE
Q psy13856 140 HSDWVRDVAWAPSWGLSKCMIASCSQ-DR----KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSL-TGDILTVSCGDNSV 213 (271)
Q Consensus 140 h~~~v~~v~~~p~~~~~~~~l~s~~~-dg----~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~-~g~~l~s~s~D~~v 213 (271)
.......|++++ ++++|..+.. ++ .+...+.. +.......+.. ......++++| +|.++++-..++.|
T Consensus 177 ~~~~P~~ia~d~----~G~~lyvad~~~~~~~~~v~~~~~~-g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V 250 (430)
T 3tc9_A 177 GLSKVRTICWTH----EADSMIITNDQNNNDRPNNYILTRE-SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQV 250 (430)
T ss_dssp CCSCEEEEEECT----TSSEEEEEECCSCTTSEEEEEEEGG-GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEE
T ss_pred CCCCcceEEEeC----CCCEEEEEeCCCCcccceEEEEeCC-Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEE
Confidence 345577899998 5774444433 22 23334432 22110112221 22346678888 67766666667788
Q ss_pred EEEEeCC
Q psy13856 214 SLWKENT 220 (271)
Q Consensus 214 ~iw~~~~ 220 (271)
..++...
T Consensus 251 ~~~~~~~ 257 (430)
T 3tc9_A 251 FRYDFTT 257 (430)
T ss_dssp EEEETTT
T ss_pred EEEECCC
Confidence 8888764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=92.35 E-value=4.1 Score=33.67 Aligned_cols=77 Identities=8% Similarity=-0.043 Sum_probs=46.5
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeecc--CCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT--FDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
.....|+++|. .+.+..+-...+.|..+|+..... ...... .-.....+++. .+.++.+....+.|..++..
T Consensus 246 ~~P~glavd~~---~~~lY~aD~~~~~I~~~d~dG~~~--~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~~~ 319 (400)
T 3p5b_L 246 QWPNGITLDLL---SGRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANRL 319 (400)
T ss_dssp SCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCCC--EEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEESS
T ss_pred CceEEEEEEeC---CCEEEEEECCCCEEEEEeCCCCcc--EEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEEcC
Confidence 46678999984 345555555678899999865442 122221 22344566663 34455555567789888866
Q ss_pred CCCce
Q psy13856 220 TDGAW 224 (271)
Q Consensus 220 ~~~~~ 224 (271)
++...
T Consensus 320 ~G~~~ 324 (400)
T 3p5b_L 320 TGSDV 324 (400)
T ss_dssp SCCCC
T ss_pred CCCce
Confidence 55433
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=92.15 E-value=2.9 Score=36.66 Aligned_cols=60 Identities=7% Similarity=0.094 Sum_probs=37.9
Q ss_pred CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEec
Q psy13856 166 DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
+|.|..||..+++. .-..... .++..-.....+..++.++.|+.++.||.+++ +.+.+++
T Consensus 465 ~G~l~A~D~~tG~~--~W~~~~~-~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG---~~lW~~~ 524 (582)
T 1flg_A 465 VGSLRAMDPVSGKV--VWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSG---KELWKFQ 524 (582)
T ss_dssp SEEEEEECTTTCCE--EEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTC---CEEEEEE
T ss_pred cceEEEEECCCCCE--EEEecCC-CCCcccceEeCCCEEEEECCCCcEEEEECCCC---CEEEEec
Confidence 68899999998874 2222111 12221112234677888999999999999988 4444443
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=92.15 E-value=4.4 Score=33.51 Aligned_cols=74 Identities=14% Similarity=-0.096 Sum_probs=46.8
Q ss_pred cceEEEEEccCCCCCCcEEEEEeC-CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEE-CCCcEEEEEeC
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQ-DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSC-GDNSVSLWKEN 219 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s-~D~~v~iw~~~ 219 (271)
.....|+++|. .+.++.+-.. .+.|...++..... .......-...+.+++++++..|..+. ..+.|..++++
T Consensus 202 ~~P~~iavdp~---~g~ly~td~~~~~~I~~~~~dG~~~--~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~d 276 (400)
T 3p5b_L 202 SKPRAIVVDPV---HGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVN 276 (400)
T ss_dssp CCEEEEEEETT---TTEEEEEECSSSCCEEEEETTSCSC--EEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred CCcceEEEecc---cCeEEEEeCCCCCEEEEEeCCCCcc--EEEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCC
Confidence 44678999985 3555554433 46788888765432 222233335678899998776666654 45678888876
Q ss_pred C
Q psy13856 220 T 220 (271)
Q Consensus 220 ~ 220 (271)
.
T Consensus 277 G 277 (400)
T 3p5b_L 277 G 277 (400)
T ss_dssp S
T ss_pred C
Confidence 4
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.06 E-value=3.5 Score=32.22 Aligned_cols=71 Identities=20% Similarity=0.147 Sum_probs=38.9
Q ss_pred CcEEEEEeCC-------CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC-----CcEEEEEeCCCCce
Q psy13856 157 KCMIASCSQD-------RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD-----NSVSLWKENTDGAW 224 (271)
Q Consensus 157 ~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-----~~v~iw~~~~~~~~ 224 (271)
+.+++.|+.+ ..+.+||..+..-.....+.........+. .++.+++.|+.+ ..+.+||+.+ ..|
T Consensus 156 ~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~-~~W 232 (302)
T 2xn4_A 156 GLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTT-NAW 232 (302)
T ss_dssp TEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTT-TEE
T ss_pred CEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE--ECCEEEEECCCCCCcccceEEEEeCCC-CCE
Confidence 5666666643 348889987754211111111111112222 256777777654 3688999875 478
Q ss_pred eEEEEe
Q psy13856 225 QCITEM 230 (271)
Q Consensus 225 ~~~~~~ 230 (271)
..+..+
T Consensus 233 ~~~~~~ 238 (302)
T 2xn4_A 233 RQVADM 238 (302)
T ss_dssp EEECCC
T ss_pred eeCCCC
Confidence 776544
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=91.89 E-value=5 Score=33.62 Aligned_cols=158 Identities=8% Similarity=-0.064 Sum_probs=81.2
Q ss_pred CCCEEEEccCCCeEEeccc----e-eeeccc--cccccccceEEEEcCCCCeEE-EEeCCCcEEEEEeecCCCCceeecc
Q psy13856 34 IGHTLISCDTQAHIGIRST----I-SLLQGS--VYLRRESNKAGALSPKLNRSA-TSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~----~-~~~~~h--~~~~~~~i~~~~~s~~~~~l~-s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
+|.++++-..++.|+.++. + ..+... ... ...++|+|+++.|. +-...+.|+.++.. ..++......
T Consensus 239 ~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~----~~~ia~dpdG~~LYvad~~~~~I~~~~~d-~~~~~~~~~~ 313 (433)
T 4hw6_A 239 NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGS----NFHIVWHPTGDWAYIIYNGKHCIYRVDYN-RETGKLAVPY 313 (433)
T ss_dssp TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSS----CEEEEECTTSSEEEEEETTTTEEEEEEBC-TTTCCBCCCE
T ss_pred CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCC----cccEEEeCCCCEEEEEeCCCCEEEEEeCC-CCCcccCcEE
Confidence 6777767667788888877 1 222111 112 34699999998554 44556778777752 0112111000
Q ss_pred ceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEE---------ccCCCCCCcEEEEEeCCCeEEEEEcCC
Q psy13856 106 YFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAW---------APSWGLSKCMIASCSQDRKVIIWTSND 176 (271)
Q Consensus 106 ~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~---------~p~~~~~~~~l~s~~~dg~i~iwd~~~ 176 (271)
.+....+ ..+ +.--......-..-..+++ .+ ++.++++-...+.|+.++. +
T Consensus 314 ----~~ag~~g----------~~g-~~dg~~~~a~~~~P~giav~~n~~y~~dd~----~g~lyvaD~~n~~I~~~~~-~ 373 (433)
T 4hw6_A 314 ----IVCGQHS----------SPG-WVDGMGTGARLWGPNQGIFVKNEAYAGEED----EYDFYFCDRDSHTVRVLTP-E 373 (433)
T ss_dssp ----EEEECTT----------CCC-CBCEEGGGSBCSSEEEEEEEECGGGTTSSC----CEEEEEEETTTTEEEEECT-T
T ss_pred ----EEEecCC----------CCc-cCCCcccceEEcCCccEEEEccccccccCC----CCcEEEEECCCCEEEEECC-C
Confidence 0000000 000 0000000001123456787 55 5677777777788888875 3
Q ss_pred CceeeeeeeccC------------------CCCeEEEEEe-cCCCEEEEEECCCcEEEEEeC
Q psy13856 177 YVTWTPFIMNTF------------------DDVVWNVSWS-LTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 177 ~~~~~~~~~~~h------------------~~~v~~v~~~-~~g~~l~s~s~D~~v~iw~~~ 219 (271)
+. +..+.+. -.....|+++ ++|.++++-...+.|+.++++
T Consensus 374 G~---v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 374 GR---VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp SE---EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CC---EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 32 2222111 1236789999 566666666667788877764
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=2.7 Score=36.74 Aligned_cols=23 Identities=9% Similarity=-0.025 Sum_probs=19.6
Q ss_pred CcEEEEEeCCCeEEEEEcCCCce
Q psy13856 157 KCMIASCSQDRKVIIWTSNDYVT 179 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~~~~~ 179 (271)
+..++.++.|+.++.+|.++++.
T Consensus 475 gg~v~~g~~dg~l~a~D~~tG~~ 497 (571)
T 2ad6_A 475 GGLVWYATLDGYLKALDNKDGKE 497 (571)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE
T ss_pred CCEEEEEcCCCeEEEEECCCCCE
Confidence 45667789999999999999885
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=91.60 E-value=4.1 Score=32.04 Aligned_cols=73 Identities=19% Similarity=0.207 Sum_probs=41.5
Q ss_pred CcEEEEEeCC-----CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC-----CcEEEEEeCCCCceeE
Q psy13856 157 KCMIASCSQD-----RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD-----NSVSLWKENTDGAWQC 226 (271)
Q Consensus 157 ~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-----~~v~iw~~~~~~~~~~ 226 (271)
+.+++.|+.+ ..+.+||..+..-.....+.........+. .++.+++.|+.+ ..+.+||+.+ ..|..
T Consensus 216 ~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~-~~W~~ 292 (308)
T 1zgk_A 216 NCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV--HQGRIYVLGGYDGHTFLDSVECYDPDT-DTWSE 292 (308)
T ss_dssp TEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTT-TEEEE
T ss_pred CEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE--ECCEEEEEcCcCCCcccceEEEEcCCC-CEEee
Confidence 5677777664 468899988754211111111111112222 256777777654 4588899875 48988
Q ss_pred EEEecc
Q psy13856 227 ITEMGK 232 (271)
Q Consensus 227 ~~~~~~ 232 (271)
+..+..
T Consensus 293 ~~~~p~ 298 (308)
T 1zgk_A 293 VTRMTS 298 (308)
T ss_dssp EEECSS
T ss_pred cCCCCC
Confidence 766543
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=91.59 E-value=4.4 Score=32.35 Aligned_cols=79 Identities=4% Similarity=-0.079 Sum_probs=48.8
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
..-..++++|. ++.+..+=+..+.|..+|+..... .....+.......+++.. +.++.+-...+.|..++..++
T Consensus 166 ~~Pnglavd~~---~~~lY~aD~~~~~I~~~d~dG~~~--~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~~~~~G 239 (318)
T 3sov_A 166 YWPNGLTLDYE---EQKLYWADAKLNFIHKSNLDGTNR--QAVVKGSLPHPFALTLFE-DILYWTDWSTHSILACNKYTG 239 (318)
T ss_dssp SCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCSC--EEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEEETTTC
T ss_pred CCccEEEEecc---CCEEEEEECCCCEEEEEcCCCCce--EEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEEECCCC
Confidence 34578999984 455556656678899999875332 222232334556777753 344555555788999988666
Q ss_pred CceeE
Q psy13856 222 GAWQC 226 (271)
Q Consensus 222 ~~~~~ 226 (271)
.....
T Consensus 240 ~~~~~ 244 (318)
T 3sov_A 240 EGLRE 244 (318)
T ss_dssp CSCEE
T ss_pred CceEE
Confidence 44333
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=91.55 E-value=4 Score=33.17 Aligned_cols=109 Identities=7% Similarity=-0.044 Sum_probs=59.4
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEE----ecCCCc
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETK----LENHSD 142 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~----~~~h~~ 142 (271)
.+.++|.|+|.++++--..|.|++++. ..+.. ..+.. +.....
T Consensus 34 P~~ia~~pdG~llVter~~G~I~~v~~---~~g~~------------------------------~~v~~~~~v~~~g~~ 80 (347)
T 3das_A 34 PWGLAPLPGGDLLVSSRDEATITRVDA---KTGRK------------------------------TELGEVPGVSPSGEG 80 (347)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECT---TTCCE------------------------------EEEEECTTCCCBTTB
T ss_pred ceEEEEcCCCcEEEEEecCCEEEEEEC---CCCcE------------------------------eeecccCceeecCCC
Confidence 689999999987777654888887764 22221 11111 112345
Q ss_pred ceEEEEEccCCCCCCcEEEE--EeCCCeEEEEEcCCC-----c---e-eeeeeec-cCCCCeEEEEEecCCCEEEEEE
Q psy13856 143 WVRDVAWAPSWGLSKCMIAS--CSQDRKVIIWTSNDY-----V---T-WTPFIMN-TFDDVVWNVSWSLTGDILTVSC 208 (271)
Q Consensus 143 ~v~~v~~~p~~~~~~~~l~s--~~~dg~i~iwd~~~~-----~---~-~~~~~~~-~h~~~v~~v~~~~~g~~l~s~s 208 (271)
....|+++|++..++.+.++ ...++.|.-|..... . . .....+. ........+.|.|||.+.++.+
T Consensus 81 GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G 158 (347)
T 3das_A 81 GLLGIALSPDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG 158 (347)
T ss_dssp SEEEEEECTTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred CceeeEeccccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence 67889999831112444333 224556666666541 1 1 0011111 1111345799999998777654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=91.50 E-value=0.95 Score=40.67 Aligned_cols=73 Identities=15% Similarity=-0.054 Sum_probs=42.0
Q ss_pred ceEEEEEccCCCCCCcEEEEEeCC-CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEE-EEEECCCcEEEEEeCC
Q psy13856 143 WVRDVAWAPSWGLSKCMIASCSQD-RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDIL-TVSCGDNSVSLWKENT 220 (271)
Q Consensus 143 ~v~~v~~~p~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l-~s~s~D~~v~iw~~~~ 220 (271)
....|+++|. .+.++.+-... +.|.++++..... .......-...+.|+|+|++..| ++-+..+.|..++++.
T Consensus 497 ~P~giavDp~---~g~ly~td~~~~~~I~~~~~dG~~~--~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG 571 (699)
T 1n7d_A 497 KPRAIVVDPV---HGFMYWTDWGTPAKIKKGGLNGVDI--YSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNG 571 (699)
T ss_dssp CCCCEECCSS---SSCCEECCCSSSCCEEBCCSSSCCC--CEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSS
T ss_pred CcceEEEccC---CCcEEEcccCCCCeEEEEeCCCCCe--eEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCC
Confidence 3467888884 34444444333 6777777654321 11222222356789999875544 4444567888888763
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=91.09 E-value=8.7 Score=34.84 Aligned_cols=150 Identities=9% Similarity=-0.013 Sum_probs=84.1
Q ss_pred CCCCEEEEccCCCeEEeccc----eeeeccc---cccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc
Q psy13856 33 RIGHTLISCDTQAHIGIRST----ISLLQGS---VYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~----~~~~~~h---~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
++|. |..|+.++-|..|+. +..+... .......|.++...++|+ |..|+.++-+..|+. .++......
T Consensus 319 ~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~---~~~~~~~~~ 393 (795)
T 4a2l_A 319 SQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNP---ITQRFTSYT 393 (795)
T ss_dssp TTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECT---TTCCEEEEC
T ss_pred CCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcC---CCCcEEEEe
Confidence 3454 445555566777765 2222211 011112378888888776 455777767778875 322211100
Q ss_pred ceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeee
Q psy13856 106 YFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIM 185 (271)
Q Consensus 106 ~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 185 (271)
. ... ... ..-....|.++...+ ++.+|..|+.++-+..+|..++.. ..+
T Consensus 394 -~-------------------~~~---~~~-~~l~~~~v~~i~~d~----~g~~lWigt~~~Gl~~~d~~~~~~---~~~ 442 (795)
T 4a2l_A 394 -L-------------------QED---ESA-RGIGSNNIKAVYVDE----KKSLVYIGTHAGGLSILHRNSGQV---ENF 442 (795)
T ss_dssp -C-------------------C----------CCSCSCEEEEEEET----TTTEEEEEETTTEEEEEETTTCCE---EEE
T ss_pred -c-------------------CCC---Ccc-cCCCCccEEEEEEcC----CCCEEEEEeCcCceeEEeCCCCcE---EEe
Confidence 0 000 000 001235788998887 477455667767799999887653 222
Q ss_pred c-----cCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 186 N-----TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 186 ~-----~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
. .....|.++...++|.+.+.. .+ -|.+|+..+
T Consensus 443 ~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~ 480 (795)
T 4a2l_A 443 NQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQ 480 (795)
T ss_dssp CTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTT
T ss_pred ecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCC
Confidence 2 124578999988888866554 34 588888764
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=91.02 E-value=4.7 Score=31.67 Aligned_cols=71 Identities=18% Similarity=0.125 Sum_probs=39.4
Q ss_pred CcEEEEEeCC-----CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC-----CcEEEEEeCCCCceeE
Q psy13856 157 KCMIASCSQD-----RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD-----NSVSLWKENTDGAWQC 226 (271)
Q Consensus 157 ~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-----~~v~iw~~~~~~~~~~ 226 (271)
+.+++.|+.+ ..+.+||..+..-.....+.........+.+ ++.+++.|+.+ ..+.+||+.+ ..|..
T Consensus 169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~-~~W~~ 245 (308)
T 1zgk_A 169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVET-ETWTF 245 (308)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTT-TEEEE
T ss_pred CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCC-CcEEE
Confidence 5677777654 4588889877542111111111111122222 56777777654 5689999875 47877
Q ss_pred EEEe
Q psy13856 227 ITEM 230 (271)
Q Consensus 227 ~~~~ 230 (271)
+..+
T Consensus 246 ~~~~ 249 (308)
T 1zgk_A 246 VAPM 249 (308)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.96 E-value=4.7 Score=31.55 Aligned_cols=71 Identities=10% Similarity=0.077 Sum_probs=37.4
Q ss_pred CcEEEEEeC---------CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC-----CcEEEEEeCCCC
Q psy13856 157 KCMIASCSQ---------DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD-----NSVSLWKENTDG 222 (271)
Q Consensus 157 ~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-----~~v~iw~~~~~~ 222 (271)
+.+++.|+. -..+.+||..+..-.....+......-..+. -++.+++.|+.+ ..+.+||+.+ .
T Consensus 150 ~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~-~ 226 (306)
T 3ii7_A 150 GLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVF--VKDKIFAVGGQNGLGGLDNVEYYDIKL-N 226 (306)
T ss_dssp TEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCEETTEEBCCEEEEETTT-T
T ss_pred CEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEEE--ECCEEEEEeCCCCCCCCceEEEeeCCC-C
Confidence 566666653 3447889988754211111111111111222 256677776643 4588898875 4
Q ss_pred ceeEEEEe
Q psy13856 223 AWQCITEM 230 (271)
Q Consensus 223 ~~~~~~~~ 230 (271)
.|..+..+
T Consensus 227 ~W~~~~~~ 234 (306)
T 3ii7_A 227 EWKMVSPM 234 (306)
T ss_dssp EEEECCCC
T ss_pred cEEECCCC
Confidence 78776544
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=90.92 E-value=6.6 Score=33.16 Aligned_cols=27 Identities=11% Similarity=-0.074 Sum_probs=19.3
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEe
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGT 93 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~ 93 (271)
.++++|.|+|+++++-...+.|++++.
T Consensus 29 P~~~a~~pdG~l~V~e~~gg~I~~~~~ 55 (454)
T 1cru_A 29 PHALLWGPDNQIWLTERATGKILRVNP 55 (454)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECT
T ss_pred ceEEEEcCCCcEEEEEcCCCEEEEEEC
Confidence 689999999987766533346766664
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=90.91 E-value=9 Score=34.72 Aligned_cols=175 Identities=10% Similarity=-0.027 Sum_probs=91.8
Q ss_pred CCCCEEEEccCCCeEEeccc----eeeecccc-----ccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceee
Q psy13856 33 RIGHTLISCDTQAHIGIRST----ISLLQGSV-----YLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQ 103 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~----~~~~~~h~-----~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~ 103 (271)
++|. |..|..++-|..|+. ...+.... ......|.++...++++.|..|+.++-+..++. .+++...
T Consensus 366 ~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~---~~~~~~~ 441 (795)
T 4a2l_A 366 KDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHR---NSGQVEN 441 (795)
T ss_dssp TTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEET---TTCCEEE
T ss_pred CCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeC---CCCcEEE
Confidence 3444 445666667777876 22221110 011123888888888875677777777888886 4443322
Q ss_pred cc---------ceeeEEEeeccceee----eEEEE-eeCCceEEeEEe----cCCCcceEEEEEccCCCCCCcEEEEEeC
Q psy13856 104 PK---------YFKLTVYSTKLTRIL----ILVRI-CGGDKWIEETKL----ENHSDWVRDVAWAPSWGLSKCMIASCSQ 165 (271)
Q Consensus 104 ~~---------~~~~~~~~~~~~~l~----~~v~i-~~~~~~~~~~~~----~~h~~~v~~v~~~p~~~~~~~~l~s~~~ 165 (271)
.. ..........+...+ +..++ ...+.+...... .-....|.++...+ ++.+.+...
T Consensus 442 ~~~~~~~l~~~~v~~i~~d~~g~lwigt~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~----~g~lWigt~- 516 (795)
T 4a2l_A 442 FNQRNSQLVNENVYAILPDGEGNLWLGTLSALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS----HKRLWIGGE- 516 (795)
T ss_dssp ECTTTSCCSCSCEEEEEECSSSCEEEEESSCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT----TCCEEEEES-
T ss_pred eecCCCCcCCCeeEEEEECCCCCEEEEecCceeEEeCCCCeEEEccccccccccCCceEEEEEECC----CCCEEEEeC-
Confidence 11 011111122244333 33333 223322221111 01235788998888 466655444
Q ss_pred CCeEEEEEcCCCceeeeee---e-ccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 166 DRKVIIWTSNDYVTWTPFI---M-NTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~---~-~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
. -+..||..+... .... . ......|.++...++|.+.+... . -|..|+..+
T Consensus 517 ~-Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~ 571 (795)
T 4a2l_A 517 E-GLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKD 571 (795)
T ss_dssp S-CEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTT
T ss_pred C-ceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCC
Confidence 4 488888766542 1100 0 11235789999989988665543 3 577888654
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=90.88 E-value=2.4 Score=32.14 Aligned_cols=63 Identities=10% Similarity=0.044 Sum_probs=40.3
Q ss_pred eEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc--eeee--eee-ccCCCCeEEEEEecCCCEEEEEECCCcEE
Q psy13856 144 VRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV--TWTP--FIM-NTFDDVVWNVSWSLTGDILTVSCGDNSVS 214 (271)
Q Consensus 144 v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~--~~~-~~h~~~v~~v~~~~~g~~l~s~s~D~~v~ 214 (271)
..++.|.| ++.+.++ .||.|+-++..+.. .|.- ..+ ..-=..+..|.|.|+|.+.+.. |+.++
T Consensus 90 F~a~~fD~----~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~ly 157 (236)
T 1tl2_A 90 FQFLFFDP----NGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFY 157 (236)
T ss_dssp CSEEEECT----TSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred ceEEEECC----CCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEE
Confidence 56899999 5787777 56988877753322 1100 011 1111467899999999987777 77654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.78 E-value=5.1 Score=31.59 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=37.2
Q ss_pred CcEEEEEeCCC-----eEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC--------------CcEEEEE
Q psy13856 157 KCMIASCSQDR-----KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD--------------NSVSLWK 217 (271)
Q Consensus 157 ~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D--------------~~v~iw~ 217 (271)
+.+++.|+.++ .+.+||..+..-.....+.........+. .++.+++.|+.+ ..+.+||
T Consensus 197 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd 274 (315)
T 4asc_A 197 GRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLVS--LVGTLYAIGGFATLETESGELVPTELNDIWRYN 274 (315)
T ss_dssp TEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEE
T ss_pred CEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEEE--ECCEEEEECCccccCcCCccccccccCcEEEec
Confidence 56777777654 58888887754211111111111112222 256777777753 2477888
Q ss_pred eCCCCceeEE
Q psy13856 218 ENTDGAWQCI 227 (271)
Q Consensus 218 ~~~~~~~~~~ 227 (271)
+.+ ..|..+
T Consensus 275 ~~~-~~W~~~ 283 (315)
T 4asc_A 275 EEE-KKWEGV 283 (315)
T ss_dssp TTT-TEEEEE
T ss_pred CCC-Chhhhh
Confidence 775 478877
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=90.70 E-value=5.9 Score=32.23 Aligned_cols=153 Identities=8% Similarity=0.008 Sum_probs=89.9
Q ss_pred CCeEEeccc------eeeeccc--c-ccccccceEEEE--cCC-CC-eEEEEeCCCcEEEEEeecCCCCceeeccceeeE
Q psy13856 44 QAHIGIRST------ISLLQGS--V-YLRRESNKAGAL--SPK-LN-RSATSSFHEAAKHLGTVQSSSPACLQPKYFKLT 110 (271)
Q Consensus 44 d~~i~lwd~------~~~~~~h--~-~~~~~~i~~~~~--s~~-~~-~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~ 110 (271)
+++|++|++ +..+..- . .....++..+++ +|. +. +++....++.+..|++.....+..
T Consensus 98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~--------- 168 (355)
T 3amr_A 98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYI--------- 168 (355)
T ss_dssp CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCE---------
T ss_pred CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcc---------
Confidence 589999955 2222110 0 011134777888 664 43 677788889998888742111111
Q ss_pred EEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc--e-eeeeee-c
Q psy13856 111 VYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV--T-WTPFIM-N 186 (271)
Q Consensus 111 ~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~--~-~~~~~~-~ 186 (271)
..+.++++.- .+.+..+...+ ....|..+-++.-|..++.+... . ..+..+ .
T Consensus 169 -------------------~~~lVR~f~l-gsq~EgcvvDd----~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~ 224 (355)
T 3amr_A 169 -------------------SGKKVRAFKM-NSQTEGMAADD----EYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADG 224 (355)
T ss_dssp -------------------EEEEEEEEEC-SSCEEEEEEET----TTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSS
T ss_pred -------------------cceEEEEecC-CCCcceEEEcC----CCCeEEEecccceEEEEeCCcCCCCCceEEEEecC
Confidence 1145555553 35788899998 47788888888777777754221 1 112222 1
Q ss_pred cC-CCCeEEEEE--ecCCC-EEEEEE-CCCcEEEEEeCCCCceeEEEEec
Q psy13856 187 TF-DDVVWNVSW--SLTGD-ILTVSC-GDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 187 ~h-~~~v~~v~~--~~~g~-~l~s~s-~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
++ ...+-.++. .++++ +|++++ .+++..+||... .++.+.++.
T Consensus 225 g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~--~~~~vg~f~ 272 (355)
T 3amr_A 225 RHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQG--KNKYVADFR 272 (355)
T ss_dssp SSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESST--TCCEEEEEE
T ss_pred CccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCC--CCcEEEEEE
Confidence 22 246777777 45555 666666 578999999862 235555553
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=89.77 E-value=7 Score=31.68 Aligned_cols=109 Identities=7% Similarity=-0.139 Sum_probs=58.0
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEE
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRD 146 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~ 146 (271)
...++|.|+|++++ +..++.|++++. .+. ... ..+............
T Consensus 31 P~~ia~~pdG~l~V-~e~~g~I~~~d~----~G~--~~~--------------------------~~~~v~~~g~~g~~g 77 (354)
T 3a9g_A 31 PWSIAPLGGGRYLV-TERPGRLVLISP----SGK--KLV--------------------------ASFDVANVGEAGLLG 77 (354)
T ss_dssp EEEEEEEETTEEEE-EETTTEEEEECS----SCE--EEE--------------------------EECCCCCSTTCSEEE
T ss_pred CeEEEEcCCCeEEE-EeCCCEEEEEeC----CCc--eEe--------------------------eccceeecCCCceee
Confidence 68999999997554 456688877752 121 100 000011112345788
Q ss_pred EEEccCCCCCCcEEEEEeC---C----CeEEEEEcCCC--ce--ee--eeeecc-CCCCeEEEEEecCCCEEEEEE
Q psy13856 147 VAWAPSWGLSKCMIASCSQ---D----RKVIIWTSNDY--VT--WT--PFIMNT-FDDVVWNVSWSLTGDILTVSC 208 (271)
Q Consensus 147 v~~~p~~~~~~~~l~s~~~---d----g~i~iwd~~~~--~~--~~--~~~~~~-h~~~v~~v~~~~~g~~l~s~s 208 (271)
|+++|.+..++.+.++-+. + ..|..|+.... .. .. ...+.. .......++|.|+|.+.++.+
T Consensus 78 ia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G 153 (354)
T 3a9g_A 78 LALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTG 153 (354)
T ss_dssp EEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECC
T ss_pred EEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEEC
Confidence 9999932222455454432 3 56777776643 10 00 111111 111346799999998766644
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=89.25 E-value=7.5 Score=31.31 Aligned_cols=114 Identities=5% Similarity=-0.036 Sum_probs=68.9
Q ss_pred ceEEEEcCCCCeEEEEe-CCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecC----C-
Q psy13856 67 NKAGALSPKLNRSATSS-FHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLEN----H- 140 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s-~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~----h- 140 (271)
.-+++|++....+..++ ..++|..|+. ..+.... + .+.+ .
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~---~~~~~~~------------------------------~-~~~~~s~~g~ 60 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNP---KTQSHFN------------------------------V-VIDGASSNGD 60 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECT---TTCCEEE------------------------------E-CCTTTCCSSC
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcC---CCCeEEE------------------------------E-ecCCccccCC
Confidence 34789988555555555 7899988886 2121111 1 1211 0
Q ss_pred -CcceEEEEE---ccCCCCCCcEEEEEe-------------CCCeEEEEEcC---CCceeeeeeeccC-----------C
Q psy13856 141 -SDWVRDVAW---APSWGLSKCMIASCS-------------QDRKVIIWTSN---DYVTWTPFIMNTF-----------D 189 (271)
Q Consensus 141 -~~~v~~v~~---~p~~~~~~~~l~s~~-------------~dg~i~iwd~~---~~~~~~~~~~~~h-----------~ 189 (271)
...+..|.| .| ++.++++.. .+..+..||+. +++......+... .
T Consensus 61 ~~~~~sGl~~~~~D~----~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~ 136 (334)
T 2p9w_A 61 GEQQMSGLSLLTHDN----SKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP 136 (334)
T ss_dssp CSEEEEEEEESSSSS----CCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC
T ss_pred CcceeeEEEEeccCC----CCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccc
Confidence 113478999 67 567776533 26889999998 5543112222211 1
Q ss_pred CCeEEEEEecCCCEEEEEECC-CcEEEEEe
Q psy13856 190 DVVWNVSWSLTGDILTVSCGD-NSVSLWKE 218 (271)
Q Consensus 190 ~~v~~v~~~~~g~~l~s~s~D-~~v~iw~~ 218 (271)
...+.++..++|+..++++.- +.|...+.
T Consensus 137 ~~~nDvavD~~GnaYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 137 FGVVQSAQDRDGNSYVAFALGMPAIARVSA 166 (334)
T ss_dssp EEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred cCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence 247899999999999988877 66544443
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=89.13 E-value=10 Score=33.09 Aligned_cols=51 Identities=14% Similarity=0.235 Sum_probs=31.6
Q ss_pred CcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCC-eEEEEEecCCC-EEEEEEC
Q psy13856 157 KCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDV-VWNVSWSLTGD-ILTVSCG 209 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~-v~~v~~~~~g~-~l~s~s~ 209 (271)
+.+++.|+.|+.++.||.++++. +-.+...... ..-+.|..+|+ |+++.+.
T Consensus 497 gglvf~g~~dg~l~A~D~~tG~~--lW~~~~~~g~~a~P~~y~~~G~qYv~~~~G 549 (582)
T 1flg_A 497 GNLVFTGTGDGYFKAFDAKSGKE--LWKFQTGSGIVSPPITWEQDGEQYLGVTVG 549 (582)
T ss_dssp TTEEEEECTTSEEEEEETTTCCE--EEEEECSSCCCSCCEEEEETTEEEEEEEEC
T ss_pred CCEEEEECCCCcEEEEECCCCCE--EEEecCCCCcccCceEEEECCEEEEEEEcc
Confidence 56777799999999999999885 3333322211 11255667775 4544443
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=88.63 E-value=14 Score=33.47 Aligned_cols=73 Identities=11% Similarity=0.085 Sum_probs=44.2
Q ss_pred CcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeec---cCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q psy13856 141 SDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMN---TFDDVVWNVSWSLTGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 141 ~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~ 217 (271)
...|.++...+ ++.+.+. +. +-+..+|..+.......... .....|.++...++|.+.+....+| |..|+
T Consensus 449 ~~~v~~i~~d~----~g~lwig-t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~ 521 (781)
T 3v9f_A 449 LLDVRVFYEDK----NKKIWIG-TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYT 521 (781)
T ss_dssp CCCEEEEEECT----TSEEEEE-ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEEC
T ss_pred CCeEEEEEECC----CCCEEEE-EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEe
Confidence 46788888887 4555444 44 45888998765531111111 1135789999988888665443344 77777
Q ss_pred eCC
Q psy13856 218 ENT 220 (271)
Q Consensus 218 ~~~ 220 (271)
.+.
T Consensus 522 ~~~ 524 (781)
T 3v9f_A 522 PDM 524 (781)
T ss_dssp TTC
T ss_pred CCC
Confidence 653
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=88.56 E-value=8.6 Score=31.08 Aligned_cols=106 Identities=8% Similarity=-0.106 Sum_probs=57.7
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeE---EecCCCcc
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEET---KLENHSDW 143 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~---~~~~h~~~ 143 (271)
...++|.|+|+++++ ..++.|++++. . .. ..+. .+......
T Consensus 33 P~~ia~~pdG~l~V~-e~~g~I~~i~~---g--~~------------------------------~~~~~~~v~~~g~~~ 76 (352)
T 2ism_A 33 PWALAFLPDGGMLIA-ERPGRIRLFRE---G--RL------------------------------STYAELSVYHRGESG 76 (352)
T ss_dssp EEEEEECTTSCEEEE-ETTTEEEEEET---T--EE------------------------------EEEEECCCCCSTTCS
T ss_pred ceEEEEcCCCeEEEE-eCCCeEEEEEC---C--Cc------------------------------cEeecceEeecCCCC
Confidence 689999999985554 56688877762 1 10 1111 11122345
Q ss_pred eEEEEEccCCCCCCcEEEEEeCC-----CeEEEEEcCCCceee----eeeec---cCCCCeEEEEEecCCCEEEEEE
Q psy13856 144 VRDVAWAPSWGLSKCMIASCSQD-----RKVIIWTSNDYVTWT----PFIMN---TFDDVVWNVSWSLTGDILTVSC 208 (271)
Q Consensus 144 v~~v~~~p~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~~~----~~~~~---~h~~~v~~v~~~~~g~~l~s~s 208 (271)
...|+++|.+..++.+.++-..+ +.|..++......-. ...+. +.......++|.|+|.+.++.+
T Consensus 77 p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G 153 (352)
T 2ism_A 77 LLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG 153 (352)
T ss_dssp EEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred ceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence 78899999321114444444432 678888876432100 11122 1111236899999997666543
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=86.98 E-value=9.7 Score=29.95 Aligned_cols=68 Identities=10% Similarity=0.089 Sum_probs=36.8
Q ss_pred CcEEEEEeCC-----CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC--------------CcEEEEE
Q psy13856 157 KCMIASCSQD-----RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD--------------NSVSLWK 217 (271)
Q Consensus 157 ~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D--------------~~v~iw~ 217 (271)
+.+++.|+.+ ..+.+||..+..-.....+.........+ ..++.+++.|+.+ ..+.+||
T Consensus 207 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd 284 (318)
T 2woz_A 207 GKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV--SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYE 284 (318)
T ss_dssp TEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE--EETTEEEEECCBCCBC----CCBCCBCCCEEEEE
T ss_pred CEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE--EECCEEEEECCeeccCCCCceeccceeeeEEEEe
Confidence 5666666643 35778888775421111111111111122 2356677776643 3588888
Q ss_pred eCCCCceeEE
Q psy13856 218 ENTDGAWQCI 227 (271)
Q Consensus 218 ~~~~~~~~~~ 227 (271)
+.+ ..|..+
T Consensus 285 ~~~-~~W~~~ 293 (318)
T 2woz_A 285 DDK-KEWAGM 293 (318)
T ss_dssp TTT-TEEEEE
T ss_pred CCC-CEehhh
Confidence 875 478877
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=86.89 E-value=11 Score=30.26 Aligned_cols=21 Identities=19% Similarity=0.364 Sum_probs=13.3
Q ss_pred cEEEEEeCCCCceeEEEEeccc
Q psy13856 212 SVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 212 ~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
.+.+||+.+ ..|..+..+...
T Consensus 286 ~~~~yd~~~-~~W~~~~~~p~~ 306 (357)
T 2uvk_A 286 STDIHLWHN-GKWDKSGELSQG 306 (357)
T ss_dssp CCEEEECC----CEEEEECSSC
T ss_pred eEEEEecCC-CceeeCCCCCCC
Confidence 578899874 489888766543
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.36 E-value=10 Score=29.70 Aligned_cols=71 Identities=10% Similarity=0.150 Sum_probs=39.6
Q ss_pred CcEEEEEeC-C-----CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCC-----cEEEEEeCCCCcee
Q psy13856 157 KCMIASCSQ-D-----RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDN-----SVSLWKENTDGAWQ 225 (271)
Q Consensus 157 ~~~l~s~~~-d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~-----~v~iw~~~~~~~~~ 225 (271)
+.+++.|+. + ..+.+||..+..-.....+.........+ ..++.+++.|+.++ .+.+||+.+ ..|.
T Consensus 149 ~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~-~~W~ 225 (315)
T 4asc_A 149 DLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT--VHDGRIIVAAGVTDTGLTSSAEVYSITD-NKWA 225 (315)
T ss_dssp TEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE--EETTEEEEEEEECSSSEEEEEEEEETTT-TEEE
T ss_pred CEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE--EECCEEEEEeccCCCCccceEEEEECCC-CeEE
Confidence 567777775 2 46888998875421111111111111122 22667777777654 488888875 4788
Q ss_pred EEEEe
Q psy13856 226 CITEM 230 (271)
Q Consensus 226 ~~~~~ 230 (271)
.+..+
T Consensus 226 ~~~~~ 230 (315)
T 4asc_A 226 PFEAF 230 (315)
T ss_dssp EECCC
T ss_pred ECCCC
Confidence 77544
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.26 E-value=20 Score=32.76 Aligned_cols=77 Identities=9% Similarity=-0.060 Sum_probs=44.3
Q ss_pred CcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeecc--CCCCeEEEEEecCCCEEEEE-ECCCcEEEEE
Q psy13856 141 SDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT--FDDVVWNVSWSLTGDILTVS-CGDNSVSLWK 217 (271)
Q Consensus 141 ~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--h~~~v~~v~~~~~g~~l~s~-s~D~~v~iw~ 217 (271)
-.....|++++. .+.++.+=.....|...++..... ...+.. .-.....|++. +..|+.+ ...+.|...+
T Consensus 557 l~~P~GLavD~~---~~~LYwaD~~~~~I~~~d~dG~~~--~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~d 629 (791)
T 3m0c_C 557 IQWPNGITLDLL---SGRLYWVDSKLHSISSIDVNGGNR--KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSAN 629 (791)
T ss_dssp CSCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCSC--EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEE
T ss_pred CCCceEEEEecC---CCeEEEEeCCCCcEEEEecCCCce--EEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEe
Confidence 356788999975 455555555667899999865442 222222 12234456653 3344444 4467787777
Q ss_pred eCCCCce
Q psy13856 218 ENTDGAW 224 (271)
Q Consensus 218 ~~~~~~~ 224 (271)
..++...
T Consensus 630 k~tG~~~ 636 (791)
T 3m0c_C 630 RLTGSDV 636 (791)
T ss_dssp TTTCCCC
T ss_pred CCCCcce
Confidence 6555333
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=86.08 E-value=19 Score=32.29 Aligned_cols=76 Identities=17% Similarity=0.131 Sum_probs=41.8
Q ss_pred EEEEccCCCCCCcEEEEEeC--C-----CeEEEEEcCCCce-----eeee-eeccCCCCeEEEEEecCCCEEEEEEC---
Q psy13856 146 DVAWAPSWGLSKCMIASCSQ--D-----RKVIIWTSNDYVT-----WTPF-IMNTFDDVVWNVSWSLTGDILTVSCG--- 209 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~--d-----g~i~iwd~~~~~~-----~~~~-~~~~h~~~v~~v~~~~~g~~l~s~s~--- 209 (271)
++.+... ++.+++.|+. + ..+.+||..+... |... ........-.+++...++.+++.|+.
T Consensus 543 a~v~~~~---~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~ 619 (695)
T 2zwa_A 543 GLEFDPV---SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPS 619 (695)
T ss_dssp EEEEETT---TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSS
T ss_pred EEEEeCC---CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCC
Confidence 3555552 3667777775 2 4588999887662 3221 11111111112223333677777774
Q ss_pred -----CCcEEEEEeCCCCcee
Q psy13856 210 -----DNSVSLWKENTDGAWQ 225 (271)
Q Consensus 210 -----D~~v~iw~~~~~~~~~ 225 (271)
...+.+||+.++ .|.
T Consensus 620 ~~~~~~~~v~~yd~~t~-~W~ 639 (695)
T 2zwa_A 620 GLFDRTNSIISLDPLSE-TLT 639 (695)
T ss_dssp CCCCTTTSEEEEETTTT-EEE
T ss_pred CCCCCCCeEEEEECCCC-eEE
Confidence 346999998754 676
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.74 E-value=11 Score=29.29 Aligned_cols=71 Identities=20% Similarity=0.114 Sum_probs=39.8
Q ss_pred CcEEEEEeCC-----CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC-----CcEEEEEeCCCCceeE
Q psy13856 157 KCMIASCSQD-----RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD-----NSVSLWKENTDGAWQC 226 (271)
Q Consensus 157 ~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-----~~v~iw~~~~~~~~~~ 226 (271)
+.+++.|+.+ ..+.+||..+..-.....+.........+. .++.+++.|+.+ ..+.+||+.+ ..|..
T Consensus 160 ~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~-~~W~~ 236 (301)
T 2vpj_A 160 GVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRT-DSWTT 236 (301)
T ss_dssp TEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTT-TEEEE
T ss_pred CEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCC-CcEEE
Confidence 5677777654 458889987754211111111111112222 256777777654 4688999875 47877
Q ss_pred EEEe
Q psy13856 227 ITEM 230 (271)
Q Consensus 227 ~~~~ 230 (271)
+..+
T Consensus 237 ~~~~ 240 (301)
T 2vpj_A 237 VTSM 240 (301)
T ss_dssp ECCC
T ss_pred CCCC
Confidence 7544
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=82.52 E-value=27 Score=31.26 Aligned_cols=72 Identities=6% Similarity=0.101 Sum_probs=43.0
Q ss_pred CcEEEEEeCCC--eEEEEEcCCCceeeeee----eccCCCCeEEEEEecC-CCEEEEEEC--C-----CcEEEEEeCCCC
Q psy13856 157 KCMIASCSQDR--KVIIWTSNDYVTWTPFI----MNTFDDVVWNVSWSLT-GDILTVSCG--D-----NSVSLWKENTDG 222 (271)
Q Consensus 157 ~~~l~s~~~dg--~i~iwd~~~~~~~~~~~----~~~h~~~v~~v~~~~~-g~~l~s~s~--D-----~~v~iw~~~~~~ 222 (271)
+.+++.|+.++ .+.+||..+.. |.... +........++.+..+ +.+++.|+. + +.+.+||+.++.
T Consensus 501 ~~iyv~GG~~~~~~v~~yd~~t~~-W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~ 579 (695)
T 2zwa_A 501 GNVLILGGVTEGPAMLLYNVTEEI-FKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAEN 579 (695)
T ss_dssp SCEEEECCBCSSCSEEEEETTTTE-EEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTC
T ss_pred CEEEEECCCCCCCCEEEEECCCCc-eEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCc
Confidence 67777887654 68999988754 32211 1111112233555555 667777765 2 458899998764
Q ss_pred -----ceeEEEE
Q psy13856 223 -----AWQCITE 229 (271)
Q Consensus 223 -----~~~~~~~ 229 (271)
.|..+..
T Consensus 580 w~~~~~W~~~~~ 591 (695)
T 2zwa_A 580 ATEPITVIKKLQ 591 (695)
T ss_dssp SSCCEEEEEEEE
T ss_pred cccceEEEEcCC
Confidence 2777655
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=81.55 E-value=2.5 Score=32.01 Aligned_cols=68 Identities=9% Similarity=0.079 Sum_probs=42.7
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce--ee--eeeec--cCCCCeEEEEEecCCCEEEEEECCCcEEE
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT--WT--PFIMN--TFDDVVWNVSWSLTGDILTVSCGDNSVSL 215 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~--~~~~~--~h~~~v~~v~~~~~g~~l~s~s~D~~v~i 215 (271)
..+..++|+| ++.+.+. .+|.+.-.+..+... |. -..+- +.. ...++.|.|+|.+.++ .||.|+-
T Consensus 41 ~~~~~laf~P----~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~-~F~a~~fD~~G~LYav--~dG~iyr 111 (236)
T 1tl2_A 41 SNFKFLFLSP----GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWN-QFQFLFFDPNGYLYAV--SKDKLYK 111 (236)
T ss_dssp TTCSEEEECT----TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGG-GCSEEEECTTSCEEEE--ETTEEEE
T ss_pred ccceeEEECC----CccEEEE--eCCeEEEECCCCCCcccccccccEecccccc-cceEEEECCCCCEEEe--CCCEEEE
Confidence 3667999999 5887766 677766666543221 00 00110 111 1478899999998877 4698887
Q ss_pred EEe
Q psy13856 216 WKE 218 (271)
Q Consensus 216 w~~ 218 (271)
++.
T Consensus 112 ~~p 114 (236)
T 1tl2_A 112 ASP 114 (236)
T ss_dssp ESC
T ss_pred eCC
Confidence 776
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=80.98 E-value=18 Score=28.32 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=38.5
Q ss_pred CCcEEEEEeC------CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC-----CcEEEEEeCCCCce
Q psy13856 156 SKCMIASCSQ------DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD-----NSVSLWKENTDGAW 224 (271)
Q Consensus 156 ~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-----~~v~iw~~~~~~~~ 224 (271)
++.+++.|+. -..+.+||..+..-.....+.........+. -++.+++.|+.+ ..+.+||+.+ ..|
T Consensus 158 ~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~-~~W 234 (318)
T 2woz_A 158 NGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI--HKGKIVIAGGVTEDGLSASVEAFDLKT-NKW 234 (318)
T ss_dssp TTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE--ETTEEEEEEEEETTEEEEEEEEEETTT-CCE
T ss_pred CCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE--ECCEEEEEcCcCCCCccceEEEEECCC-CeE
Confidence 3566666664 2358899988754211111111111112222 256777777653 3477888875 478
Q ss_pred eEEEEe
Q psy13856 225 QCITEM 230 (271)
Q Consensus 225 ~~~~~~ 230 (271)
..+..+
T Consensus 235 ~~~~~~ 240 (318)
T 2woz_A 235 EVMTEF 240 (318)
T ss_dssp EECCCC
T ss_pred EECCCC
Confidence 776544
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=80.75 E-value=32 Score=31.02 Aligned_cols=71 Identities=15% Similarity=0.177 Sum_probs=44.2
Q ss_pred CcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeec---c-CCCCeEEEEEecCCCEEEEEECCCcEEEE
Q psy13856 141 SDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMN---T-FDDVVWNVSWSLTGDILTVSCGDNSVSLW 216 (271)
Q Consensus 141 ~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~-h~~~v~~v~~~~~g~~l~s~s~D~~v~iw 216 (271)
...|.++...+ ++.+.+.....| +..||...... ..+. + ....|.++...++|.+.++. .+|-+..|
T Consensus 494 ~~~i~~i~~d~----~g~lWigt~~~G-l~~~~~~~~~~---~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~ 564 (781)
T 3v9f_A 494 ENFVRSIAQDS----EGRFWIGTFGGG-VGIYTPDMQLV---RKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFP 564 (781)
T ss_dssp CSCEEEEEECT----TCCEEEEESSSC-EEEECTTCCEE---EEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEES
T ss_pred cceeEEEEEcC----CCCEEEEEcCCC-EEEEeCCCCeE---EEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEE
Confidence 35788898887 466555443345 77788766542 2222 1 13468899888888866554 35544777
Q ss_pred EeCC
Q psy13856 217 KENT 220 (271)
Q Consensus 217 ~~~~ 220 (271)
|..+
T Consensus 565 d~~~ 568 (781)
T 3v9f_A 565 SARN 568 (781)
T ss_dssp CTTT
T ss_pred CCCC
Confidence 7654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 271 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 3e-07 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 6e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 3e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-04 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-04 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.001 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 0.002 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 50.5 bits (119), Expect = 6e-08
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 8/96 (8%)
Query: 123 VRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP 182
+++ + L H +WVR V + I SC+ D+ + +W DY
Sbjct: 229 IKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKF----ILSCADDKTLRVW---DYKNKRC 281
Query: 183 F-IMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWK 217
+N + V ++ + T + D +V +W+
Sbjct: 282 MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 48.2 bits (113), Expect = 3e-07
Identities = 12/98 (12%), Positives = 33/98 (33%), Gaps = 4/98 (4%)
Query: 123 VRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTP 182
++ + + H + + + P+ A+ S D ++
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFPN----GNAFATGSDDATCRLFDLRADQELMT 263
Query: 183 FIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220
+ + + +VS+S +G +L D + ++W
Sbjct: 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALK 301
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 38.2 bits (87), Expect = 6e-04
Identities = 13/97 (13%), Positives = 34/97 (35%), Gaps = 8/97 (8%)
Query: 121 ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTW 180
+ D+ + +N + V+++ S L + + D +W D +
Sbjct: 250 CRLFDLRADQELMTYSHDNIICGITSVSFSKSGRL----LLAGYDDFNCNVW---DALKA 302
Query: 181 TP-FIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLW 216
++ D+ V + + G + D+ + +W
Sbjct: 303 DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 3e-06
Identities = 10/79 (12%), Positives = 22/79 (27%), Gaps = 7/79 (8%)
Query: 139 NHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWS 198
H V + +A S +D + W + V + S
Sbjct: 263 LHESCVLSLKFAYCGKW----FVSTGKDNLLNAW---RTPYGASIFQSKESSSVLSCDIS 315
Query: 199 LTGDILTVSCGDNSVSLWK 217
+ + GD ++++
Sbjct: 316 VDDKYIVTGSGDKKATVYE 334
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.6 bits (93), Expect = 1e-04
Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 4/103 (3%)
Query: 128 GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT 187
G+KW++ +L+ H+ V V WAP I +C DR +WT ++
Sbjct: 38 GNKWVQVHELKEHNGQVTGVDWAPDSNR----IVTCGTDRNAYVWTLKGRTWKPTLVILR 93
Query: 188 FDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230
+ V W+ V G +S+ + W +
Sbjct: 94 INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI 136
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.9 bits (86), Expect = 0.001
Identities = 12/87 (13%), Positives = 26/87 (29%), Gaps = 4/87 (4%)
Query: 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSL 199
+ + AW + IA C + +V I+ + + + V V W+
Sbjct: 6 LVEPISCHAWNKD----RTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP 61
Query: 200 TGDILTVSCGDNSVSLWKENTDGAWQC 226
+ + D + +W
Sbjct: 62 DSNRIVTCGTDRNAYVWTLKGRTWKPT 88
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 2e-04
Identities = 11/102 (10%), Positives = 28/102 (27%), Gaps = 7/102 (6%)
Query: 117 TRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND 176
+ K N + V + ++P + + D + W +
Sbjct: 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRH----KFLYTAGSDGIISCW---N 279
Query: 177 YVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKE 218
T + V + + +IL ++ D++
Sbjct: 280 LQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAA 321
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.4 bits (90), Expect = 2e-04
Identities = 9/95 (9%), Positives = 24/95 (25%), Gaps = 5/95 (5%)
Query: 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW-TSNDYVTWTPFIMNTFDDVVWNV 195
+ D++ D+ P SK ++ S D + ++ + +
Sbjct: 7 EQAPKDYISDIKIIP----SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCC 62
Query: 196 SWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEM 230
++ D+ L +
Sbjct: 63 NFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTN 97
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 37.5 bits (85), Expect = 0.001
Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 14/100 (14%)
Query: 131 WIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSND----------YVTW 180
E H D V V + + S S DR V +W +
Sbjct: 244 DSENESGTGHKDSVYSVVFTRDGQS----VVSGSLDRSVKLWNLQNANNKSDSKTPNSGT 299
Query: 181 TPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220
D V +V+ + + + D V W + +
Sbjct: 300 CEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKS 339
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 36.7 bits (83), Expect = 0.002
Identities = 24/115 (20%), Positives = 38/115 (33%), Gaps = 14/115 (12%)
Query: 110 TVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 169
+V L + E H D+V VA + I S S+DR V
Sbjct: 277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEY----ILSGSKDRGV 332
Query: 170 IIWTSNDYVTWTP-FIMNTFDDVVWNV------SWSLTGDILTVSCGDNSVSLWK 217
+ W D + P ++ + V +V S ++ GD +WK
Sbjct: 333 LFW---DKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 271 | |||
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.95 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.94 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.93 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.93 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.93 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.93 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.93 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.92 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.92 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.92 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.92 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.91 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.9 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.9 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.89 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.88 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.87 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.87 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.87 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.86 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.86 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.85 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.84 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.8 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.79 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.78 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.76 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.71 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.71 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.64 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.64 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.6 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.57 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.56 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.52 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.44 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.41 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.31 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.29 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.2 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.05 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.02 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.0 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 98.89 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 98.75 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.62 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.49 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.46 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.37 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.28 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.15 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 98.1 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.06 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.03 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 97.91 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 97.89 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 97.81 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.64 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 97.61 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.56 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 97.53 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.53 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 97.33 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 97.07 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 96.82 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 96.26 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 95.12 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 94.6 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 92.97 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 92.57 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 92.32 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 91.58 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 88.33 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 81.33 |
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=5.5e-26 Score=183.91 Aligned_cols=191 Identities=14% Similarity=0.163 Sum_probs=151.8
Q ss_pred CCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCCeEEEEeC--CCcEEEEEeecCCCCce
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSATSSF--HEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~--d~~i~~~d~~~~~~~~~ 101 (271)
..|+|++||+|+.||+|++||+ ...+..|... |.+++|+|+++++++++. +..+++|+. ++++.
T Consensus 66 ~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~----v~~v~~s~d~~~l~~~~~~~~~~~~v~~~---~~~~~ 138 (311)
T d1nr0a1 66 TSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGP----VKDISWDSESKRIAAVGEGRERFGHVFLF---DTGTS 138 (311)
T ss_dssp ECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSC----EEEEEECTTSCEEEEEECCSSCSEEEEET---TTCCB
T ss_pred EeCCCCeEeccccCceEeeeeeeccccccccccccccCc----ccccccccccccccccccccccccccccc---ccccc
Confidence 4579999999999999999998 3457889988 999999999999999985 456899998 55555
Q ss_pred eecc-c----eeeEEEeeccce-ee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEE
Q psy13856 102 LQPK-Y----FKLTVYSTKLTR-IL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVI 170 (271)
Q Consensus 102 ~~~~-~----~~~~~~~~~~~~-l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~ 170 (271)
.... . .....+.+++++ ++ +.|++.+....+....+.+|...|.++.|+| ++.++++++.|+.++
T Consensus 139 ~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p----~~~~l~~~~~d~~v~ 214 (311)
T d1nr0a1 139 NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNP----DGSLFASTGGDGTIV 214 (311)
T ss_dssp CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEE
T ss_pred cccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCc----ccccccccccccccc
Confidence 4443 1 233445556664 44 6788833333378888899999999999999 699999999999999
Q ss_pred EEEcCCCceeee-----eeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccch
Q psy13856 171 IWTSNDYVTWTP-----FIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSE 235 (271)
Q Consensus 171 iwd~~~~~~~~~-----~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 235 (271)
+||.+++..... ....+|...|++++|+|++++|++|+.|++|+|||++++ +++.++..+..
T Consensus 215 ~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~---~~~~~l~~~~~ 281 (311)
T d1nr0a1 215 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL---KVEKTIPVGTR 281 (311)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSS
T ss_pred ccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC---cEEEEEECCCC
Confidence 999988764211 123468899999999999999999999999999999877 67777766543
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=2.4e-26 Score=190.36 Aligned_cols=195 Identities=14% Similarity=0.117 Sum_probs=150.7
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
.+.+..|||++||+|+.|+.|++||. +..+++|.+. |.+++|+|++++|++|+.|++|++|+.. .+
T Consensus 11 t~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~----V~~l~fsp~~~~l~s~s~D~~i~vWd~~---~~ 83 (371)
T d1k8kc_ 11 SCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ----VTGVDWAPDSNRIVTCGTDRNAYVWTLK---GR 83 (371)
T ss_dssp CEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSC----EEEEEEETTTTEEEEEETTSCEEEEEEE---TT
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCC----EEEEEECCCCCEEEEEECCCeEEEEeec---cc
Confidence 34445579999999999999999998 5667899999 9999999999999999999999999983 33
Q ss_pred ceeec---c----ceeeEEEeeccceee-----eEEEE---ee-CCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEE
Q psy13856 100 ACLQP---K----YFKLTVYSTKLTRIL-----ILVRI---CG-GDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASC 163 (271)
Q Consensus 100 ~~~~~---~----~~~~~~~~~~~~~l~-----~~v~i---~~-~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~ 163 (271)
..... . ......+.++++.++ +.+++ .. ............|...|.+++|+| ++.+|++|
T Consensus 84 ~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p----~~~~l~s~ 159 (371)
T d1k8kc_ 84 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP----NSVLLAAG 159 (371)
T ss_dssp EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT----TSSEEEEE
T ss_pred ccccccccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccc----cccceecc
Confidence 32211 1 124455666777776 56666 22 222334555678999999999999 69999999
Q ss_pred eCCCeEEEEEcCCCce----------------eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEE
Q psy13856 164 SQDRKVIIWTSNDYVT----------------WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCI 227 (271)
Q Consensus 164 ~~dg~i~iwd~~~~~~----------------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~ 227 (271)
+.|+.+++|+...... ........|...|.+++|+|++++|++++.|+.|++||+..+ ..+
T Consensus 160 s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~---~~~ 236 (371)
T d1k8kc_ 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAV 236 (371)
T ss_dssp ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEE
T ss_pred ccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc---cce
Confidence 9999999999864321 013345678889999999999999999999999999999876 455
Q ss_pred EEecccch
Q psy13856 228 TEMGKTSE 235 (271)
Q Consensus 228 ~~~~~~~~ 235 (271)
.++..+..
T Consensus 237 ~~~~~~~~ 244 (371)
T d1k8kc_ 237 ATLASETL 244 (371)
T ss_dssp EEEECSSC
T ss_pred eeeecccc
Confidence 55555443
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.94 E-value=5.8e-25 Score=178.10 Aligned_cols=203 Identities=10% Similarity=0.072 Sum_probs=152.8
Q ss_pred cceecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCC
Q psy13856 23 EIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 23 ~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
.-.+......|++.+||||+.||+|++||. +..+..|... |.+++|+|+++++++|+.|+.+++|+.....
T Consensus 55 ~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~----v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~ 130 (340)
T d1tbga_ 55 LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSW----VMTCAYAPSGNYVACGGLDNICSIYNLKTRE 130 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSC----EEEEEECTTSSEEEEEETTCCEEEEESSSSC
T ss_pred CCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEeccccc----EEeeEeeccceeeeeecccceeecccccccc
Confidence 344556666679999999999999999998 6778899999 9999999999999999999999999863221
Q ss_pred CCce-eecc-ce---ee------------------------------------------EEEeeccceee-----eEEEE
Q psy13856 98 SPAC-LQPK-YF---KL------------------------------------------TVYSTKLTRIL-----ILVRI 125 (271)
Q Consensus 98 ~~~~-~~~~-~~---~~------------------------------------------~~~~~~~~~l~-----~~v~i 125 (271)
.... .... .+ .. .........++ +.+++
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i 210 (340)
T d1tbga_ 131 GNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKL 210 (340)
T ss_dssp SCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEE
T ss_pred cccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEE
Confidence 1111 0000 00 00 00000011111 45656
Q ss_pred eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEE
Q psy13856 126 CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILT 205 (271)
Q Consensus 126 ~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~ 205 (271)
.+.........+.+|...|.+++|+| ++.+|++|+.|+.|++||.+............+...|.+++|+|++.+|+
T Consensus 211 ~d~~~~~~~~~~~~h~~~i~~v~~~p----~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 286 (340)
T d1tbga_ 211 WDVREGMCRQTFTGHESDINAICFFP----NGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL 286 (340)
T ss_dssp EETTTTEEEEEECCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEE
T ss_pred EECCCCcEEEEEeCCCCCeEEEEECC----CCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEE
Confidence 22222267788899999999999999 69999999999999999999877532334456777899999999999999
Q ss_pred EEECCCcEEEEEeCCCCceeEEEEecccchh
Q psy13856 206 VSCGDNSVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 206 s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
+|+.||.|++||+.++ +++..+.+|...
T Consensus 287 ~g~~dg~i~iwd~~~~---~~~~~~~~H~~~ 314 (340)
T d1tbga_ 287 AGYDDFNCNVWDALKA---DRAGVLAGHDNR 314 (340)
T ss_dssp EEETTSCEEEEETTTC---CEEEEECCCSSC
T ss_pred EEECCCEEEEEECCCC---cEEEEEcCCCCC
Confidence 9999999999999876 778888887654
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.93 E-value=1.9e-24 Score=174.74 Aligned_cols=179 Identities=15% Similarity=0.198 Sum_probs=144.4
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC 101 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~ 101 (271)
...+..|+|+.|+.++. +.|.+|++ ...+.+|... |++++|+|+|++|++|+.|++|++|+.. ....
T Consensus 21 ~~~a~~~~g~~l~~~~~-~~v~i~~~~~~~~~~~~~~H~~~----v~~~~~sp~g~~latg~~dg~i~iwd~~---~~~~ 92 (311)
T d1nr0a1 21 VVLGNTPAGDKIQYCNG-TSVYTVPVGSLTDTEIYTEHSHQ----TTVAKTSPSGYYCASGDVHGNVRIWDTT---QTTH 92 (311)
T ss_dssp CCCEECTTSSEEEEEET-TEEEEEETTCSSCCEEECCCSSC----EEEEEECTTSSEEEEEETTSEEEEEESS---STTC
T ss_pred EEEEEcCCCCEEEEEeC-CEEEEEECCCCceeEEEcCCCCC----EEEEEEeCCCCeEeccccCceEeeeeee---cccc
Confidence 34445579999998865 78999998 6677899999 9999999999999999999999999984 3322
Q ss_pred e---ecc----ceeeEEEeeccceee-------eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCc-EEEEEe
Q psy13856 102 L---QPK----YFKLTVYSTKLTRIL-------ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC-MIASCS 164 (271)
Q Consensus 102 ~---~~~----~~~~~~~~~~~~~l~-------~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~-~l~s~~ 164 (271)
. ... ......++.++++++ ..+++ ...+ +....+.+|.+.|.+++|+|. +. .|++|+
T Consensus 93 ~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~--~~~~~l~~h~~~v~~v~~~~~----~~~~l~sgs 166 (311)
T d1nr0a1 93 ILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG--TSNGNLTGQARAMNSVDFKPS----RPFRIISGS 166 (311)
T ss_dssp CEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC--CBCBCCCCCSSCEEEEEECSS----SSCEEEEEE
T ss_pred ccccccccccCccccccccccccccccccccccccccccccccc--ccccccccccccccccccccc----ceeeecccc
Confidence 2 111 223445666677766 22555 3334 566778899999999999994 55 589999
Q ss_pred CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 165 QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 165 ~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.|+.|++||.++.+. ......|...|+++.|+|+++++++++.|+.|++|++..+
T Consensus 167 ~d~~i~i~d~~~~~~--~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~ 221 (311)
T d1nr0a1 167 DDNTVAIFEGPPFKF--KSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG 221 (311)
T ss_dssp TTSCEEEEETTTBEE--EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred ccccccccccccccc--ccccccccccccccccCccccccccccccccccccccccc
Confidence 999999999998776 6778899999999999999999999999999999999866
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.93 E-value=1.5e-24 Score=173.35 Aligned_cols=177 Identities=15% Similarity=0.244 Sum_probs=142.8
Q ss_pred ccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCcee
Q psy13856 28 TESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACL 102 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~ 102 (271)
.....+++..+++++.|+.+++||+ ...+.+|... +.+++|+|++++|++++.|+.+++|+. ..+...
T Consensus 106 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~d~~v~~~~~---~~~~~~ 178 (317)
T d1vyhc1 106 SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREW----VRMVRPNQDGTLIASCSNDQTVRVWVV---ATKECK 178 (317)
T ss_dssp EEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSC----EEEEEECTTSSEEEEEETTSCEEEEET---TTCCEE
T ss_pred eeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCc----ceeeecccCCCEEEEEeCCCeEEEEee---ccceee
Confidence 3344578999999999999999998 6778889988 999999999999999999999999998 544444
Q ss_pred ecc-ce----eeEEEeec--------------------cceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccC
Q psy13856 103 QPK-YF----KLTVYSTK--------------------LTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPS 152 (271)
Q Consensus 103 ~~~-~~----~~~~~~~~--------------------~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~ 152 (271)
... .. ....+... +..++ +.+++.+....+++..+.+|...|.+++|+|
T Consensus 179 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~- 257 (317)
T d1vyhc1 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS- 257 (317)
T ss_dssp EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-
T ss_pred EEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-
Confidence 332 11 11112211 12222 5666622222277888999999999999999
Q ss_pred CCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q psy13856 153 WGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 153 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~ 217 (271)
++.+|++|+.||.|++||+++++. ...+.+|.+.|++++|+|++++|++|+.||+|+|||
T Consensus 258 ---~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 258 ---GGKFILSCADDKTLRVWDYKNKRC--MKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp ---SSSCEEEEETTTEEEEECCTTSCC--CEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred ---CCCEEEEEECCCeEEEEECCCCcE--EEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 699999999999999999998876 778899999999999999999999999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=4.2e-25 Score=184.15 Aligned_cols=164 Identities=15% Similarity=0.174 Sum_probs=129.0
Q ss_pred CCCEEEEccCCCeEEeccc-----------------------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEE
Q psy13856 34 IGHTLISCDTQAHIGIRST-----------------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKH 90 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~-----------------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~ 90 (271)
.+.++++++.||.+++|++ ......+... +.+++|+|++ +|++|+.|++|++
T Consensus 135 ~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~v~~s~dg-~lasgs~Dg~i~i 209 (393)
T d1sq9a_ 135 LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF----ATSVDISERG-LIATGFNNGTVQI 209 (393)
T ss_dssp -CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC----CCEEEECTTS-EEEEECTTSEEEE
T ss_pred cccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCc----EEEEEECCCC-EEEEEeCCCcEEE
Confidence 4578999999999999997 1111223334 7899999997 8899999999999
Q ss_pred EEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCC---
Q psy13856 91 LGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDR--- 167 (271)
Q Consensus 91 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg--- 167 (271)
||. .+++.+. .++....+.+|..+|.+++|+| ++.+|++|+.|+
T Consensus 210 wd~---~~~~~~~--------------------------~~~~~~~l~~h~~~V~~l~~sp----dg~~l~sgs~D~t~~ 256 (393)
T d1sq9a_ 210 SEL---STLRPLY--------------------------NFESQHSMINNSNSIRSVKFSP----QGSLLAIAHDSNSFG 256 (393)
T ss_dssp EET---TTTEEEE--------------------------EEECCC---CCCCCEEEEEECS----STTEEEEEEEETTEE
T ss_pred Eee---ccccccc--------------------------ccccccccccccceEEEccccc----ccceeeeecCCCCcc
Confidence 998 5554433 1134455678999999999999 799999999987
Q ss_pred eEEEEEcCCCceee-----------eeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchh
Q psy13856 168 KVIIWTSNDYVTWT-----------PFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 168 ~i~iwd~~~~~~~~-----------~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
.|++||++++.... ...+.+|.+.|++++|+|++++|++++.|++|++||++++ +++..+.+|...
T Consensus 257 ~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g---~~~~~l~gH~~~ 333 (393)
T d1sq9a_ 257 CITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERITTLNMHCDD 333 (393)
T ss_dssp EEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEEEEECCGGG
T ss_pred eeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC---CEEEEECCcCCc
Confidence 49999998876421 1123479999999999999999999999999999999988 889999998766
Q ss_pred hh
Q psy13856 237 RA 238 (271)
Q Consensus 237 ~~ 238 (271)
..
T Consensus 334 v~ 335 (393)
T d1sq9a_ 334 IE 335 (393)
T ss_dssp CS
T ss_pred cc
Confidence 53
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=1.2e-23 Score=171.64 Aligned_cols=208 Identities=13% Similarity=0.100 Sum_probs=161.0
Q ss_pred cceeEEeeceeEeecccc---------------ccceecccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccc
Q psy13856 4 KEWLLVSCDGLLMTLKPT---------------LEIETYTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVY 61 (271)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~ 61 (271)
+++|++.+||.+..+... ++-.+......|||++|++|+.|+.|++||+ ...+..|..
T Consensus 63 g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 142 (337)
T d1gxra_ 63 TRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142 (337)
T ss_dssp SSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSS
T ss_pred CCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccccccccccccccc
Confidence 567777778877665311 0111334556689999999999999999997 455677888
Q ss_pred cccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-ce----eeEEEeeccceee-----eEEEEe--eCC
Q psy13856 62 LRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-YF----KLTVYSTKLTRIL-----ILVRIC--GGD 129 (271)
Q Consensus 62 ~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~~----~~~~~~~~~~~l~-----~~v~i~--~~~ 129 (271)
. +..++|+|++.++++++.|+.+++|+. .++++.... .+ ....++..+..++ +.+++. ..+
T Consensus 143 ~----v~~~~~~~~~~~l~s~~~d~~i~~~~~---~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~ 215 (337)
T d1gxra_ 143 A----CYALAISPDSKVCFSCCSDGNIAVWDL---HNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG 215 (337)
T ss_dssp C----EEEEEECTTSSEEEEEETTSCEEEEET---TTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred c----ccccccccccccccccccccccccccc---ccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8 999999999999999999999999998 666555443 22 2333445566666 777772 333
Q ss_pred ceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEEC
Q psy13856 130 KWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG 209 (271)
Q Consensus 130 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 209 (271)
+.+..+. |...|.+++|+| ++.++++|+.|+.+++||++... ......|...|.+++|+|++++|++++.
T Consensus 216 --~~~~~~~-~~~~i~~l~~~~----~~~~l~~~~~d~~i~i~d~~~~~---~~~~~~~~~~i~~v~~s~~g~~l~s~s~ 285 (337)
T d1gxra_ 216 --RQLQQHD-FTSQIFSLGYCP----TGEWLAVGMESSNVEVLHVNKPD---KYQLHLHESCVLSLKFAYCGKWFVSTGK 285 (337)
T ss_dssp --EEEEEEE-CSSCEEEEEECT----TSSEEEEEETTSCEEEEETTSSC---EEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred --eeecccc-cccceEEEEEcc----cccccceeccccccccccccccc---cccccccccccceEEECCCCCEEEEEeC
Confidence 4555544 889999999999 68999999999999999999877 4456789999999999999999999999
Q ss_pred CCcEEEEEeCCCCceeEEEEec
Q psy13856 210 DNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 210 D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
|+.|++||..++ +.+..+.
T Consensus 286 Dg~i~iwd~~~~---~~~~~~~ 304 (337)
T d1gxra_ 286 DNLLNAWRTPYG---ASIFQSK 304 (337)
T ss_dssp TSEEEEEETTTC---CEEEEEE
T ss_pred CCeEEEEECCCC---CEEEEcc
Confidence 999999999876 4444443
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=3.7e-24 Score=174.60 Aligned_cols=175 Identities=14% Similarity=0.126 Sum_probs=143.1
Q ss_pred cCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceee
Q psy13856 29 ESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQ 103 (271)
Q Consensus 29 ~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~ 103 (271)
....+++.++++++.|+.|++|++ .....+|... |.+++|+++++.+++++.|+.+++||. ++++.+.
T Consensus 147 ~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~----v~~l~~s~~~~~~~~~~~d~~v~i~d~---~~~~~~~ 219 (337)
T d1gxra_ 147 LAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDG----ASCIDISNDGTKLWTGGLDNTVRSWDL---REGRQLQ 219 (337)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEETTSEEEEEET---TTTEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccc---ccceeec
Confidence 334579999999999999999998 5666788888 999999999999999999999999998 6677666
Q ss_pred ccce----eeEEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEE
Q psy13856 104 PKYF----KLTVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWT 173 (271)
Q Consensus 104 ~~~~----~~~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd 173 (271)
...+ ....++..++.++ +.+++ .... ........|...|.+++|+| ++.+|++|+.||.|++||
T Consensus 220 ~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~i~~v~~s~----~g~~l~s~s~Dg~i~iwd 293 (337)
T d1gxra_ 220 QHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNK--PDKYQLHLHESCVLSLKFAY----CGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTS--SCEEEECCCSSCEEEEEECT----TSSEEEEEETTSEEEEEE
T ss_pred ccccccceEEEEEcccccccceeccccccccccccc--cccccccccccccceEEECC----CCCEEEEEeCCCeEEEEE
Confidence 5533 2233455566666 67777 2222 12345567999999999999 699999999999999999
Q ss_pred cCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 174 SNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 174 ~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
..+++. .. ...|.+.|.+++|+|++++|++|+.|++|+|||+-
T Consensus 294 ~~~~~~--~~-~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl~ 336 (337)
T d1gxra_ 294 TPYGAS--IF-QSKESSSVLSCDISVDDKYIVTGSGDKKATVYEVI 336 (337)
T ss_dssp TTTCCE--EE-EEECSSCEEEEEECTTSCEEEEEETTSCEEEEEEE
T ss_pred CCCCCE--EE-EccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEEE
Confidence 998875 33 34588899999999999999999999999999973
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=4.2e-24 Score=172.99 Aligned_cols=144 Identities=13% Similarity=0.089 Sum_probs=125.7
Q ss_pred CCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
..+++.++++|+.|+.|++||+ +..+.+|... |.+++|+|++++|++|+.|+.+++|+. .....
T Consensus 192 ~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~----i~~v~~~p~~~~l~s~s~d~~i~~~~~---~~~~~---- 260 (340)
T d1tbga_ 192 LAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD----INAICFFPNGNAFATGSDDATCRLFDL---RADQE---- 260 (340)
T ss_dssp ECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEETTSCEEEEET---TTTEE----
T ss_pred cccccceeEEeecCceEEEEECCCCcEEEEEeCCCCC----eEEEEECCCCCEEEEEeCCCeEEEEee---ccccc----
Confidence 3467889999999999999998 6778899999 999999999999999999999999998 22211
Q ss_pred ceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeee
Q psy13856 106 YFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIM 185 (271)
Q Consensus 106 ~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 185 (271)
........|...|.+++|+| ++.+|++|+.||.|++||+.+++. ...+
T Consensus 261 --------------------------~~~~~~~~~~~~i~~~~~s~----~~~~l~~g~~dg~i~iwd~~~~~~--~~~~ 308 (340)
T d1tbga_ 261 --------------------------LMTYSHDNIICGITSVSFSK----SGRLLLAGYDDFNCNVWDALKADR--AGVL 308 (340)
T ss_dssp --------------------------EEEECCTTCCSCEEEEEECS----SSCEEEEEETTSCEEEEETTTCCE--EEEE
T ss_pred --------------------------ccccccccccCceEEEEECC----CCCEEEEEECCCEEEEEECCCCcE--EEEE
Confidence 11122345677899999999 699999999999999999998886 7788
Q ss_pred ccCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q psy13856 186 NTFDDVVWNVSWSLTGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 186 ~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~ 217 (271)
.+|.++|++++|+|++.+|++|+.||.|+|||
T Consensus 309 ~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 309 AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 99999999999999999999999999999997
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.4e-23 Score=170.53 Aligned_cols=198 Identities=15% Similarity=0.122 Sum_probs=147.8
Q ss_pred ceecccCCCCCCCEEEEccCCCeEEeccc-------------eeeeccccccccccceEEEEcCCCCeEEEEeC--CCcE
Q psy13856 24 IETYTESPLRIGHTLISCDTQAHIGIRST-------------ISLLQGSVYLRRESNKAGALSPKLNRSATSSF--HEAA 88 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-------------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~--d~~i 88 (271)
+.....+|..+|.+|++|+.||+|++||+ ...+..|.+. |.+++|+++++++++++. ++.+
T Consensus 66 v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~----v~~v~~s~~~~~l~~~~~~~~~~~ 141 (325)
T d1pgua1 66 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGP----ISDISWDFEGRRLCVVGEGRDNFG 141 (325)
T ss_dssp EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSC----EEEEEECTTSSEEEEEECCSSCSE
T ss_pred EEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCc----EEEEEECCCCCccceeeccccceE
Confidence 44455666678899999999999999998 1234557777 999999999999887764 6788
Q ss_pred EEEEeecCCCCceeecc-ce----eeEEEeeccce-ee-----eEEEEeeCCceEEeEE---ecCCCcceEEEEEccCCC
Q psy13856 89 KHLGTVQSSSPACLQPK-YF----KLTVYSTKLTR-IL-----ILVRICGGDKWIEETK---LENHSDWVRDVAWAPSWG 154 (271)
Q Consensus 89 ~~~d~~~~~~~~~~~~~-~~----~~~~~~~~~~~-l~-----~~v~i~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~ 154 (271)
++|+. .+++++... .+ ....+...+.. ++ +.+++.+....+.... ..+|...|.+++|+|+
T Consensus 142 ~~~~~---~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd-- 216 (325)
T d1pgua1 142 VFISW---DSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD-- 216 (325)
T ss_dssp EEEET---TTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST--
T ss_pred EEEee---cccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccc--
Confidence 89987 666666554 22 33445555544 33 6677732222233333 3567788999999996
Q ss_pred CCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEe---cCCCEEEEEECCCcEEEEEeCCCCceeEEEEec
Q psy13856 155 LSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWS---LTGDILTVSCGDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 155 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~---~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
.+.+|++|+.|+.|++||.++++. ...+.+|..++..+.|+ |+|.+|++++.|+.|+|||++++ +++.++.
T Consensus 217 -~~~~l~s~~~d~~i~iwd~~~~~~--~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~---~~~~~~~ 290 (325)
T d1pgua1 217 -SGEFVITVGSDRKISCFDGKSGEF--LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS---KCVQKWT 290 (325)
T ss_dssp -TCCEEEEEETTCCEEEEETTTCCE--EEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT---EEEEEEE
T ss_pred -cceeccccccccceeeeeeccccc--cccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC---CEEEEEE
Confidence 578999999999999999998886 67788888777666665 68999999999999999999987 6777766
Q ss_pred ccchh
Q psy13856 232 KTSEQ 236 (271)
Q Consensus 232 ~~~~~ 236 (271)
.+...
T Consensus 291 ~~~~~ 295 (325)
T d1pgua1 291 LDKQQ 295 (325)
T ss_dssp CCTTC
T ss_pred ecCCc
Confidence 55443
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=4.4e-23 Score=170.54 Aligned_cols=196 Identities=15% Similarity=0.122 Sum_probs=147.4
Q ss_pred ccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCcee
Q psy13856 28 TESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACL 102 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~ 102 (271)
.....|+|++|++|+.||.|++||. +..+.+|... |.+++|++++..+++++.++.+++||. ......
T Consensus 126 ~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~----v~~~~~~~~~~~~~~~~~~~~i~~~d~---~~~~~~ 198 (388)
T d1erja_ 126 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD----IYSLDYFPSGDKLVSGSGDRTVRIWDL---RTGQCS 198 (388)
T ss_dssp EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEECTTSSEEEEEETTSEEEEEET---TTTEEE
T ss_pred EEEECCCCCcceeccccccccccccccccccccccccccc----ccccccccccccccccccceeeeeeec---cccccc
Confidence 3445679999999999999999998 6677889999 999999999999999999999999998 555544
Q ss_pred eccce----eeEEEe-eccceee-----eEEEEeeCCceEEe-------EEecCCCcceEEEEEccCCCCCCcEEEEEeC
Q psy13856 103 QPKYF----KLTVYS-TKLTRIL-----ILVRICGGDKWIEE-------TKLENHSDWVRDVAWAPSWGLSKCMIASCSQ 165 (271)
Q Consensus 103 ~~~~~----~~~~~~-~~~~~l~-----~~v~i~~~~~~~~~-------~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~ 165 (271)
..... ....+. .++..++ +.+++......... ....+|...|.+++|+| ++.+|++|+.
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~----~~~~l~s~~~ 274 (388)
T d1erja_ 199 LTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTR----DGQSVVSGSL 274 (388)
T ss_dssp EEEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECT----TSSEEEEEET
T ss_pred cccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECC----CCCEEEEEEC
Confidence 43311 122222 2355665 56777111110222 22356889999999999 6999999999
Q ss_pred CCeEEEEEcCCCce----------eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccch
Q psy13856 166 DRKVIIWTSNDYVT----------WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSE 235 (271)
Q Consensus 166 dg~i~iwd~~~~~~----------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~ 235 (271)
|+.|++||++.... ........|...|.+++|+|++.+|++|+.||.|++||++++ +++.++++|..
T Consensus 275 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~l~~H~~ 351 (388)
T d1erja_ 275 DRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRN 351 (388)
T ss_dssp TSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred CCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEeCCCC
Confidence 99999999976432 113345678899999999999999999999999999999877 77888888766
Q ss_pred hh
Q psy13856 236 QR 237 (271)
Q Consensus 236 ~~ 237 (271)
..
T Consensus 352 ~V 353 (388)
T d1erja_ 352 SV 353 (388)
T ss_dssp CE
T ss_pred CE
Confidence 54
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.92 E-value=3.8e-23 Score=165.31 Aligned_cols=198 Identities=19% Similarity=0.149 Sum_probs=138.2
Q ss_pred EeeccccccceecccCCCCCCCEEEEccCCCeEEeccc-----eeee-ccccccccccceEEEEcCCCCeEEEEeCCCcE
Q psy13856 15 LMTLKPTLEIETYTESPLRIGHTLISCDTQAHIGIRST-----ISLL-QGSVYLRRESNKAGALSPKLNRSATSSFHEAA 88 (271)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~-~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i 88 (271)
+......+.-.+......|||++|+||+.||+|++||+ ...+ ..|... |.+++|+|+++ +++++.|+.+
T Consensus 4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~----v~~v~~~~~g~-~~~~~~d~~v 78 (299)
T d1nr0a2 4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATM----ITGIKTTSKGD-LFTVSWDDHL 78 (299)
T ss_dssp EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSC----EEEEEECTTSC-EEEEETTTEE
T ss_pred cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCc----EEEEEeeccce-eecccceeeE
Confidence 33333344545555566679999999999999999998 4444 468888 99999999986 4567789999
Q ss_pred EEEEeecCCCCceeec---c--ceee-------------------------------------EEEeeccceee-----e
Q psy13856 89 KHLGTVQSSSPACLQP---K--YFKL-------------------------------------TVYSTKLTRIL-----I 121 (271)
Q Consensus 89 ~~~d~~~~~~~~~~~~---~--~~~~-------------------------------------~~~~~~~~~l~-----~ 121 (271)
++|+............ . .... ..++.+++.++ +
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 158 (299)
T d1nr0a2 79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDS 158 (299)
T ss_dssp EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTS
T ss_pred EEeccCCccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9998632111000000 0 0000 11112233333 5
Q ss_pred EEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCcee-eeeeeccCCCCeEEEEEe
Q psy13856 122 LVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTW-TPFIMNTFDDVVWNVSWS 198 (271)
Q Consensus 122 ~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~h~~~v~~v~~~ 198 (271)
.+++ ...+. ........|...|.+++|+| ++.+|++++.|+.|++||..+.... ....+.+|...|++++|+
T Consensus 159 ~i~~~d~~~~~-~~~~~~~~~~~~i~~~~~~~----~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s 233 (299)
T d1nr0a2 159 KVHVYKLSGAS-VSEVKTIVHPAEITSVAFSN----NGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWS 233 (299)
T ss_dssp EEEEEEEETTE-EEEEEEEECSSCEEEEEECT----TSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEEC
T ss_pred ccccccccccc-cccccccccccccccccccc----cccccccccccccccccccccccccccccccccccccccccccc
Confidence 5555 22332 11223346889999999999 6999999999999999999876542 133567789999999999
Q ss_pred cCCCEEEEEECCCcEEEEEeCCCC
Q psy13856 199 LTGDILTVSCGDNSVSLWKENTDG 222 (271)
Q Consensus 199 ~~g~~l~s~s~D~~v~iw~~~~~~ 222 (271)
|++.+|++|+.|+.|++||++...
T Consensus 234 ~~~~~l~sgs~dg~i~iwd~~~~~ 257 (299)
T d1nr0a2 234 PDNVRLATGSLDNSVIVWNMNKPS 257 (299)
T ss_dssp TTSSEEEEEETTSCEEEEETTCTT
T ss_pred ccccceEEEcCCCEEEEEECCCCC
Confidence 999999999999999999998653
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=5.5e-23 Score=164.07 Aligned_cols=204 Identities=15% Similarity=0.230 Sum_probs=149.9
Q ss_pred eecccCCCCCCCEEEEccCCCeEEeccc-----eeeecccccc-------------------------------------
Q psy13856 25 ETYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYL------------------------------------- 62 (271)
Q Consensus 25 ~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~------------------------------------- 62 (271)
.+......|++++|+||+.||+|++||+ +..+.+|...
T Consensus 19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (317)
T d1vyhc1 19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMH 98 (317)
T ss_dssp CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCC
T ss_pred CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccccccccccc
Confidence 3444555678999999999999999997 4555555554
Q ss_pred -ccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-----ceeeEEEeeccceee-----eEEEEeeCCce
Q psy13856 63 -RRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-----YFKLTVYSTKLTRIL-----ILVRICGGDKW 131 (271)
Q Consensus 63 -~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~-----~~v~i~~~~~~ 131 (271)
....+.++.|+|+++.+++++.|+.+++|+. .++...... ......+..++..++ +.+++......
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~ 175 (317)
T d1vyhc1 99 GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV---QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATK 175 (317)
T ss_dssp CCSSCEEEEEECSSSSEEEEEETTSEEEEEET---TTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred cccccceeeeccCCCceEEeeccCcceeEeec---ccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccc
Confidence 0001334555666677788888888989988 555555443 113334555567766 67777322222
Q ss_pred EEeEEecCCCcceEEEEEccCC----------------CCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEE
Q psy13856 132 IEETKLENHSDWVRDVAWAPSW----------------GLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNV 195 (271)
Q Consensus 132 ~~~~~~~~h~~~v~~v~~~p~~----------------~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v 195 (271)
.....+.+|...+.++.|+|.. ...+.++++++.|+.|++||.+++.. ...+.+|...|.++
T Consensus 176 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~--~~~~~~~~~~v~~~ 253 (317)
T d1vyhc1 176 ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC--LMTLVGHDNWVRGV 253 (317)
T ss_dssp CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE--EEEEECCSSCEEEE
T ss_pred eeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcE--EEEEeCCCCCEEEE
Confidence 6778888999999999998752 11345799999999999999999876 77888999999999
Q ss_pred EEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEecccchh
Q psy13856 196 SWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 196 ~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~ 236 (271)
+|+|++.+|++++.||.|++||+.++ +.+.++.+|...
T Consensus 254 ~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~~ 291 (317)
T d1vyhc1 254 LFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHF 291 (317)
T ss_dssp EECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECCSSC
T ss_pred EECCCCCEEEEEECCCeEEEEECCCC---cEEEEEcCCCCC
Confidence 99999999999999999999999877 556667776543
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.91 E-value=3.9e-23 Score=170.83 Aligned_cols=154 Identities=15% Similarity=0.175 Sum_probs=122.7
Q ss_pred CCCCEEEEccCCCeEEeccc-----e-------eeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----I-------SLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~-------~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
+++.+|++|+.|+.|++|+. . ....+|... |.+++|+|++++|++++.|+.+++||+. .+.
T Consensus 215 ~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~----v~~l~~s~~~~~l~s~~~d~~i~iwd~~---~~~ 287 (388)
T d1erja_ 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDS----VYSVVFTRDGQSVVSGSLDRSVKLWNLQ---NAN 287 (388)
T ss_dssp TTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSC----EEEEEECTTSSEEEEEETTSEEEEEEC-------
T ss_pred CCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCC----EEEEEECCCCCEEEEEECCCcEEEEecc---CCc
Confidence 58899999999999999998 1 223467777 9999999999999999999999999983 332
Q ss_pred eeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCcee
Q psy13856 101 CLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTW 180 (271)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~ 180 (271)
........ ... ........|...|.+++|+| ++.+|++|+.||.|++||+++++.
T Consensus 288 ~~~~~~~~------------------~~~--~~~~~~~~~~~~v~~~~~s~----~~~~l~sg~~dg~i~vwd~~~~~~- 342 (388)
T d1erja_ 288 NKSDSKTP------------------NSG--TCEVTYIGHKDFVLSVATTQ----NDEYILSGSKDRGVLFWDKKSGNP- 342 (388)
T ss_dssp -------------------------------CEEEEEECCSSCEEEEEECG----GGCEEEEEETTSEEEEEETTTCCE-
T ss_pred cccccccc------------------ccc--ceeeecccccceEEEEEECC----CCCEEEEEeCCCEEEEEECCCCcE-
Confidence 22111000 111 34555667999999999999 699999999999999999999887
Q ss_pred eeeeeccCCCCeEEEEE------ecCCCEEEEEECCCcEEEEEeC
Q psy13856 181 TPFIMNTFDDVVWNVSW------SLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 181 ~~~~~~~h~~~v~~v~~------~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
...+.+|.+.|.++++ +|++.+|++|+.||+|+||+++
T Consensus 343 -~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 343 -LLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp -EEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred -EEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 7788999999999975 5688999999999999999985
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.90 E-value=3.1e-22 Score=159.90 Aligned_cols=148 Identities=15% Similarity=0.150 Sum_probs=117.9
Q ss_pred CCCCCCEEEEccCCCeEEeccc------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
..|++++|++|+.|+.|++||+ ......|... |.+++|+|++++|++++.|+.+++|+.. ++...
T Consensus 144 ~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~----i~~~~~~~~~~~l~~~~~d~~i~~~~~~---~~~~~-- 214 (299)
T d1nr0a2 144 LSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE----ITSVAFSNNGAFLVATDQSRKVIPYSVA---NNFEL-- 214 (299)
T ss_dssp ECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSC----EEEEEECTTSSEEEEEETTSCEEEEEGG---GTTEE--
T ss_pred cccccccccccccccccccccccccccccccccccccc----cccccccccccccccccccccccccccc---ccccc--
Confidence 3478999999999999999998 1234567788 9999999999999999999999999982 22211
Q ss_pred cceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeee
Q psy13856 105 KYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFI 184 (271)
Q Consensus 105 ~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 184 (271)
.....+.+|...|++++|+| ++.+|++|+.||.|++||++++.......
T Consensus 215 ---------------------------~~~~~~~~h~~~v~~l~~s~----~~~~l~sgs~dg~i~iwd~~~~~~~~~~~ 263 (299)
T d1nr0a2 215 ---------------------------AHTNSWTFHTAKVACVSWSP----DNVRLATGSLDNSVIVWNMNKPSDHPIII 263 (299)
T ss_dssp ---------------------------SCCCCCCCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTCTTSCCEEE
T ss_pred ---------------------------cccccccccccccccccccc----cccceEEEcCCCEEEEEECCCCCcceEEE
Confidence 22344567999999999999 69999999999999999998876432333
Q ss_pred eccCC-CCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 185 MNTFD-DVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 185 ~~~h~-~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
...|. ..+.++.| +++.+|++++.|++|++||+.
T Consensus 264 ~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 264 KGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred ecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEecc
Confidence 44444 45666655 567899999999999999974
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.90 E-value=5.5e-22 Score=163.80 Aligned_cols=184 Identities=10% Similarity=0.019 Sum_probs=140.5
Q ss_pred cccCCCCCCCEEEEccCCCeEEeccc-------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCC
Q psy13856 27 YTESPLRIGHTLISCDTQAHIGIRST-------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSP 99 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~~i~lwd~-------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~ 99 (271)
......|++++|++|+.|++|++||+ ...+.+|... |.+++|+|+++.|++++.|+.+++|+.......
T Consensus 55 ~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~----v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~ 130 (371)
T d1k8kc_ 55 TGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRA----ARCVRWAPNEKKFAVGSGSRVISICYFEQENDW 130 (371)
T ss_dssp EEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSC----EEEEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred EEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccc----ccccccccccccceeecccCcceeeeeeccccc
Confidence 44444579999999999999999998 3345678888 999999999999999999999999988432221
Q ss_pred ceeecc--c----eeeEEEeeccceee-----eEEEEee--CC----------------ceEEeEEecCCCcceEEEEEc
Q psy13856 100 ACLQPK--Y----FKLTVYSTKLTRIL-----ILVRICG--GD----------------KWIEETKLENHSDWVRDVAWA 150 (271)
Q Consensus 100 ~~~~~~--~----~~~~~~~~~~~~l~-----~~v~i~~--~~----------------~~~~~~~~~~h~~~v~~v~~~ 150 (271)
...... . .....++++++.++ +.+++.. .. .........+|...|.+++|+
T Consensus 131 ~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 210 (371)
T d1k8kc_ 131 WVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 210 (371)
T ss_dssp EEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC
T ss_pred ccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEee
Confidence 111111 1 13344556677776 5676611 00 013456667899999999999
Q ss_pred cCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 151 PSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 151 p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
| ++.+|++++.|+.|++||...+.. ...+..|..+|.+++|+|++.+|++|+ |+.+++|..+..
T Consensus 211 ~----~g~~l~s~~~d~~i~iwd~~~~~~--~~~~~~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 211 A----NGSRVAWVSHDSTVCLADADKKMA--VATLASETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSA 274 (371)
T ss_dssp S----SSSEEEEEETTTEEEEEEGGGTTE--EEEEECSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETT
T ss_pred c----ccccccccccCCcceEEeeecccc--eeeeecccccceeeeecCCCCEEEEEc-CCceEEEEeeCC
Confidence 9 699999999999999999998876 677888999999999999998887655 788888877643
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=1.3e-22 Score=168.95 Aligned_cols=140 Identities=14% Similarity=0.076 Sum_probs=104.2
Q ss_pred CCCCCEEEEccCCCeEEeccc-----------eeeeccccccccccceEEEEcCCCCeEEEEeCCCc---EEEEEeecCC
Q psy13856 32 LRIGHTLISCDTQAHIGIRST-----------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEA---AKHLGTVQSS 97 (271)
Q Consensus 32 ~~~g~~l~s~s~d~~i~lwd~-----------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~---i~~~d~~~~~ 97 (271)
.|++ +|++|+.|++|++||+ ...+.+|... |.+++|+|++++|++|+.|++ |++||. +
T Consensus 193 s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~----V~~l~~spdg~~l~sgs~D~t~~~i~lwd~---~ 264 (393)
T d1sq9a_ 193 SERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS----IRSVKFSPQGSLLAIAHDSNSFGCITLYET---E 264 (393)
T ss_dssp CTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC----EEEEEECSSTTEEEEEEEETTEEEEEEEET---T
T ss_pred CCCC-EEEEEeCCCcEEEEeecccccccccccccccccccce----EEEcccccccceeeeecCCCCcceeeeccc---c
Confidence 4565 8999999999999998 2345678888 999999999999999999975 888998 6
Q ss_pred CCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC
Q psy13856 98 SPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY 177 (271)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 177 (271)
++.++....... ........+.+|.+.|++++|+| ++++|+||+.|++|++||++++
T Consensus 265 ~g~~~~~l~~~~-------------------~~~~~~~~~~gH~~~V~~l~fsp----d~~~l~S~s~D~~v~vWd~~~g 321 (393)
T d1sq9a_ 265 FGERIGSLSVPT-------------------HSSQASLGEFAHSSWVMSLSFND----SGETLCSAGWDGKLRFWDVKTK 321 (393)
T ss_dssp TCCEEEEECBC---------------------------CCBSBSSCEEEEEECS----SSSEEEEEETTSEEEEEETTTT
T ss_pred cceeeeeecccc-------------------ccccceeeeecccCceeeeccCC----CCCeeEEECCCCEEEEEECCCC
Confidence 666655332111 11144556678999999999999 7999999999999999999998
Q ss_pred ceeeeeeeccCCCCeE----EEEEecCCCEE
Q psy13856 178 VTWTPFIMNTFDDVVW----NVSWSLTGDIL 204 (271)
Q Consensus 178 ~~~~~~~~~~h~~~v~----~v~~~~~g~~l 204 (271)
++ +..+.+|.+.|. .++|+|++..+
T Consensus 322 ~~--~~~l~gH~~~v~~~~~~~~~~~~~~~~ 350 (393)
T d1sq9a_ 322 ER--ITTLNMHCDDIEIEEDILAVDEHGDSL 350 (393)
T ss_dssp EE--EEEEECCGGGCSSGGGCCCBCTTSCBC
T ss_pred CE--EEEECCcCCcccCCccEEEECCCCCEE
Confidence 86 777888865543 24455554443
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.88 E-value=5e-21 Score=155.27 Aligned_cols=198 Identities=9% Similarity=0.058 Sum_probs=142.6
Q ss_pred cccCCCCCCCEEEEccCCC-eEEeccc-------eeeeccc-cccccccceEEEEcC--CCCeEEEEeCCCcEEEEEeec
Q psy13856 27 YTESPLRIGHTLISCDTQA-HIGIRST-------ISLLQGS-VYLRRESNKAGALSP--KLNRSATSSFHEAAKHLGTVQ 95 (271)
Q Consensus 27 ~~~~~~~~g~~l~s~s~d~-~i~lwd~-------~~~~~~h-~~~~~~~i~~~~~s~--~~~~l~s~s~d~~i~~~d~~~ 95 (271)
......|+|+.|+.++.+. .|+.|+. ...+.+| ... |++++|+| ++++|++|+.||+|++||...
T Consensus 21 t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~----v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~ 96 (325)
T d1pgua1 21 THLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSV----VTTVKFSPIKGSQYLCSGDESGKVIVWGWTF 96 (325)
T ss_dssp CCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSC----EEEEEECSSTTCCEEEEEETTSEEEEEEEEE
T ss_pred EEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCC----EEEEEEeeCCCCCEEEEEeCCCCEEEeeecC
Confidence 3444567899888876654 4677876 4556676 456 89999998 567999999999999999843
Q ss_pred CCCCceeecc----------ceeeEEEeeccceee-------eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCC
Q psy13856 96 SSSPACLQPK----------YFKLTVYSTKLTRIL-------ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLS 156 (271)
Q Consensus 96 ~~~~~~~~~~----------~~~~~~~~~~~~~l~-------~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 156 (271)
+......... ......++.+++.++ +.+.+ .+.+ +.+..+.+|...|.+++|+|. +
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~~h~~~v~~~~~~~~---~ 171 (325)
T d1pgua1 97 DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--NSLGEVSGHSQRINACHLKQS---R 171 (325)
T ss_dssp EGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC--CEEEECCSCSSCEEEEEECSS---S
T ss_pred CcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc--ccceeeeeccccccccccccc---c
Confidence 2222222111 112344555666665 22334 3445 678888999999999999995 3
Q ss_pred CcEEEEEeCCCeEEEEEcCCCceee-eeeeccCCCCeEEEEEecC-CCEEEEEECCCcEEEEEeCCCCceeEEEEecccc
Q psy13856 157 KCMIASCSQDRKVIIWTSNDYVTWT-PFIMNTFDDVVWNVSWSLT-GDILTVSCGDNSVSLWKENTDGAWQCITEMGKTS 234 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~h~~~v~~v~~~~~-g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~ 234 (271)
..++++++.|+.+++||....+... .....+|...|.+++|+|+ +.+|++++.|+.|++||++++ +.+..+.+|.
T Consensus 172 ~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~---~~~~~l~~~~ 248 (325)
T d1pgua1 172 PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG---EFLKYIEDDQ 248 (325)
T ss_dssp SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC---CEEEECCBTT
T ss_pred cceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc---cccccccccc
Confidence 4568899999999999998765321 1234567889999999996 689999999999999999877 6667777655
Q ss_pred hh
Q psy13856 235 EQ 236 (271)
Q Consensus 235 ~~ 236 (271)
..
T Consensus 249 ~~ 250 (325)
T d1pgua1 249 EP 250 (325)
T ss_dssp BC
T ss_pred cc
Confidence 43
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=8.2e-21 Score=150.71 Aligned_cols=146 Identities=14% Similarity=0.175 Sum_probs=115.4
Q ss_pred CCCCEEEEccCC-CeEEeccc------eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc
Q psy13856 33 RIGHTLISCDTQ-AHIGIRST------ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 33 ~~g~~l~s~s~d-~~i~lwd~------~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~ 105 (271)
+++..+++++.| +.+++|++ ......|... +.+++|+|++.+|++|+.|+.|++||. .++.
T Consensus 128 ~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~----v~~~~~s~~~~~l~~g~~dg~i~i~d~---~~~~----- 195 (287)
T d1pgua2 128 LSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAK----PSYISISPSETYIAAGDVMGKILLYDL---QSRE----- 195 (287)
T ss_dssp ECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSC----EEEEEECTTSSEEEEEETTSCEEEEET---TTTE-----
T ss_pred ccCcceeeeccccceeeeeeccccceeeeeeeccCCc----eeEEEeccCccccccccccccccceee---cccc-----
Confidence 467777776665 47999998 2223346666 999999999999999999999999998 2221
Q ss_pred ceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCC------CCCCcEEEEEeCCCeEEEEEcCCCce
Q psy13856 106 YFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSW------GLSKCMIASCSQDRKVIIWTSNDYVT 179 (271)
Q Consensus 106 ~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~------~~~~~~l~s~~~dg~i~iwd~~~~~~ 179 (271)
.....+.+|...|.+++|+|.. ..++.+|++|+.|+.|++||++++..
T Consensus 196 --------------------------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~ 249 (287)
T d1pgua2 196 --------------------------VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMK 249 (287)
T ss_dssp --------------------------EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTC
T ss_pred --------------------------cccccccccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCe
Confidence 1223356799999999999842 12567999999999999999977543
Q ss_pred eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEe
Q psy13856 180 WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 180 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~ 218 (271)
. ...+.+|.+.|++++|+|++ .|++++.|+.|++|++
T Consensus 250 ~-~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 250 I-IKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp C-EEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred E-EEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 2 56678999999999999986 5889999999999986
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=3.1e-20 Score=150.34 Aligned_cols=173 Identities=14% Similarity=0.088 Sum_probs=129.9
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccc-
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKY- 106 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~- 106 (271)
+++++|+||+.||+|++||+ +..+.+|.+. |++++|+|+ .+|++|+.|++|++|+. ....+.....
T Consensus 21 ~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~----V~~l~~s~~-~~l~s~s~D~~i~iw~~---~~~~~~~~~~~ 92 (355)
T d1nexb2 21 FEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGG----VWALKYAHG-GILVSGSTDRTVRVWDI---KKGCCTHVFEG 92 (355)
T ss_dssp EETTEEEEEETTTEEEEEETTTTEEEEEEECCSSC----EEEEEEETT-TEEEEEETTCCEEEEET---TTTEEEEEECC
T ss_pred ECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCC----EEEEEEcCC-CEEEEEecccccccccc---ccccccccccc
Confidence 47899999999999999998 7888999999 999999986 58999999999999997 4333321110
Q ss_pred --e----eeEEEeeccceee------------------------------------------------------------
Q psy13856 107 --F----KLTVYSTKLTRIL------------------------------------------------------------ 120 (271)
Q Consensus 107 --~----~~~~~~~~~~~l~------------------------------------------------------------ 120 (271)
. ....+...+..++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 172 (355)
T d1nexb2 93 HNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGN 172 (355)
T ss_dssp CSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETT
T ss_pred ccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccc
Confidence 0 0000011111111
Q ss_pred --------eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCe
Q psy13856 121 --------ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVV 192 (271)
Q Consensus 121 --------~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v 192 (271)
+.+++.+....+.+....++...+.++.++| ++.++++++.|+.|++||.+++.. ...+.+|...|
T Consensus 173 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~d~~i~i~d~~~~~~--~~~~~~h~~~v 246 (355)
T d1nexb2 173 IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH----ERKRCISASMDTTIRIWDLENGEL--MYTLQGHTALV 246 (355)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET----TTTEEEEEETTSCEEEEETTTCCE--EEEECCCSSCC
T ss_pred eeeeecccceeeeeecccccceeeeeccccccccccccc----cceeeecccccceEEeeecccccc--ccccccccccc
Confidence 1222211111244556667888889999999 689999999999999999999876 77888999999
Q ss_pred EEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 193 WNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 193 ~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
.+++|+ +++|++++.||.|++||+++.
T Consensus 247 ~~~~~~--~~~l~~~~~dg~i~iwd~~~~ 273 (355)
T d1nexb2 247 GLLRLS--DKFLVSAAADGSIRGWDANDY 273 (355)
T ss_dssp CEEEEC--SSEEEEECTTSEEEEEETTTC
T ss_pred cccccc--cceeeeeeccccccccccccc
Confidence 999986 469999999999999999865
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=2.4e-20 Score=149.88 Aligned_cols=200 Identities=12% Similarity=-0.015 Sum_probs=129.2
Q ss_pred cccceecccCCCCCCCEEEEccCCCeEEeccc--------eeeeccccccccccceEEEEcCC-CCeEEEEeCCCcEEEE
Q psy13856 21 TLEIETYTESPLRIGHTLISCDTQAHIGIRST--------ISLLQGSVYLRRESNKAGALSPK-LNRSATSSFHEAAKHL 91 (271)
Q Consensus 21 ~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~--------~~~~~~h~~~~~~~i~~~~~s~~-~~~l~s~s~d~~i~~~ 91 (271)
.++-.+......|++++||+||.||+|+|||+ +....+|... |.+++|+|+ +.+|++|+.|+.+++|
T Consensus 9 ~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~----V~~v~f~~~~~~~l~sg~~d~~v~~w 84 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHP----LLCCNFIDNTDLQIYVGTVQGEILKV 84 (342)
T ss_dssp CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSC----EEEEEEEESSSEEEEEEETTSCEEEE
T ss_pred CCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCC----EEEEEEeCCCCCEEEEcccccceeee
Confidence 33444555556679999999999999999997 2333468888 999999986 4589999999999999
Q ss_pred EeecCCCCceeecc---c---eeeEEEeec------------------------------------------------cc
Q psy13856 92 GTVQSSSPACLQPK---Y---FKLTVYSTK------------------------------------------------LT 117 (271)
Q Consensus 92 d~~~~~~~~~~~~~---~---~~~~~~~~~------------------------------------------------~~ 117 (271)
+.. ........ . ......... ..
T Consensus 85 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (342)
T d1yfqa_ 85 DLI---GSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS 161 (342)
T ss_dssp CSS---SSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred ecc---cccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence 983 22221111 0 000000110 00
Q ss_pred eee-----eEEEE-e--eCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCcee-------ee
Q psy13856 118 RIL-----ILVRI-C--GGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTW-------TP 182 (271)
Q Consensus 118 ~l~-----~~v~i-~--~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-------~~ 182 (271)
.++ +.+++ . .............+...+.+..+.|. ++..+++++.||.+.+|+....... ..
T Consensus 162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~ 238 (342)
T d1yfqa_ 162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPK---EQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238 (342)
T ss_dssp EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSG---GGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEE
T ss_pred ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecC---CCCEEEeecCCCeEEEEEecCCcceeecccccee
Confidence 111 22333 0 00000111122233445566666665 6889999999999999998653210 00
Q ss_pred ------eeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 183 ------FIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 183 ------~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
.....|...+++++|+|++.+|++|+.||.|++||+++. +.+.++..+
T Consensus 239 ~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~---~~l~~~~~~ 292 (342)
T d1yfqa_ 239 RCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---KKIKNFAKF 292 (342)
T ss_dssp ECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCCC
T ss_pred eeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCC---cEEEEecCC
Confidence 112356668999999999999999999999999999877 666666543
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=4.6e-20 Score=146.31 Aligned_cols=207 Identities=14% Similarity=0.089 Sum_probs=138.6
Q ss_pred eeEeeccc-cccceecccCCCCCCCEEEEccCCCeEEeccceeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEE
Q psy13856 13 GLLMTLKP-TLEIETYTESPLRIGHTLISCDTQAHIGIRSTISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHL 91 (271)
Q Consensus 13 ~~~~~~~~-~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~ 91 (271)
-++.+++. ...+.....+| |+||+.||+|++||......+|... |.+++|+++ ..+++++.|+++++|
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~------l~sgs~Dg~v~~Wd~~~~~~~h~~~----V~~~~~~~~-~~~~s~s~D~~v~~w 72 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP------LISGSYDGRIMEWSSSSMHQDHSNL----IVSLDNSKA-QEYSSISWDDTLKVN 72 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT------TEEEETTSCEEETTTTEEECCCCSC----EEEEECCST-TCCEEEETTTEEEET
T ss_pred ceeEEECCCCCceEEEEECc------EEEEeCCCeEEEEECCCCCCCCCCC----EEEEEecCC-CeEEEEeeccccccc
Confidence 34555553 22344444433 8999999999999996666889988 999999876 467899999999999
Q ss_pred EeecCCCCc---ee----------------------------ecc--ceeeEEEeeccceee------eEEEEeeCCceE
Q psy13856 92 GTVQSSSPA---CL----------------------------QPK--YFKLTVYSTKLTRIL------ILVRICGGDKWI 132 (271)
Q Consensus 92 d~~~~~~~~---~~----------------------------~~~--~~~~~~~~~~~~~l~------~~v~i~~~~~~~ 132 (271)
+......+. +. ... ..+.......+..++ +.+++.......
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~ 152 (287)
T d1pgua2 73 GITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLE 152 (287)
T ss_dssp TEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCEEEEETTEEE
T ss_pred cccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccccceeeeeeccCcceeeeccccceeeeeeccccc
Confidence 863211110 00 000 001111222222222 234442211112
Q ss_pred EeEEe-cCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecC----------C
Q psy13856 133 EETKL-ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLT----------G 201 (271)
Q Consensus 133 ~~~~~-~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~----------g 201 (271)
....+ ..|...+++++|+| ++.+|++|+.||.|++||..+.... ...+.+|...|.+++|+|. +
T Consensus 153 ~~~~~~~~~~~~v~~~~~s~----~~~~l~~g~~dg~i~i~d~~~~~~~-~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~ 227 (287)
T d1pgua2 153 VSFDLKTPLRAKPSYISISP----SETYIAAGDVMGKILLYDLQSREVK-TSRWAFRTSKINAISWKPAEKGANEEEIEE 227 (287)
T ss_dssp EEEECSSCCSSCEEEEEECT----TSSEEEEEETTSCEEEEETTTTEEE-ECCSCCCSSCEEEEEECCCC------CCSC
T ss_pred eeeeeeeccCCceeEEEecc----Cccccccccccccccceeecccccc-cccccccccccceeeecccccccccccCCC
Confidence 22233 34778899999999 6999999999999999999887642 3356789999999999874 4
Q ss_pred CEEEEEECCCcEEEEEeCCCCceeEEEEecccchhh
Q psy13856 202 DILTVSCGDNSVSLWKENTDGAWQCITEMGKTSEQR 237 (271)
Q Consensus 202 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~ 237 (271)
.+|++|+.|++|+||+++... +.+..+.+|....
T Consensus 228 ~~l~sgs~D~~i~iw~~~~~~--~~~~~~~~h~~~V 261 (287)
T d1pgua2 228 DLVATGSLDTNIFIYSVKRPM--KIIKALNAHKDGV 261 (287)
T ss_dssp CEEEEEETTSCEEEEESSCTT--CCEEETTSSTTCE
T ss_pred CeeEeecCCCeEEEEECCCCC--eEEEEeCCCCCCe
Confidence 689999999999999987643 4455666766543
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=1e-19 Score=143.29 Aligned_cols=184 Identities=14% Similarity=0.141 Sum_probs=133.5
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCc
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~ 100 (271)
+++.++ ||++||||+.||+|+|||+ +..+++|.+. |.+++| ++++|++|+.|+.+++|+. ..+.
T Consensus 18 V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~----V~~v~~--~~~~l~s~s~D~~i~~~~~---~~~~ 86 (293)
T d1p22a2 18 VYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGS----VLCLQY--DERVIITGSSDSTVRVWDV---NTGE 86 (293)
T ss_dssp EEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSC----EEEEEC--CSSEEEEEETTSCEEEEES---SSCC
T ss_pred EEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCC----Eeeeec--ccceeeccccccccccccc---cccc
Confidence 444443 8999999999999999998 7788999999 998877 6789999999999999998 4444
Q ss_pred eeecc---ceeeEEEeeccceee-----eEEEE---eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeE
Q psy13856 101 CLQPK---YFKLTVYSTKLTRIL-----ILVRI---CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 169 (271)
Q Consensus 101 ~~~~~---~~~~~~~~~~~~~l~-----~~v~i---~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i 169 (271)
..... .............++ +.+.+ ...........+..|...+..+.+.+ ..+++++.|+.+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~s~d~~i 160 (293)
T d1p22a2 87 MLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD------KYIVSASGDRTI 160 (293)
T ss_dssp EEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET------TEEEEEETTSEE
T ss_pred ccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccceecc------cccccccCCCce
Confidence 44332 112222222222222 44444 11222245566677888888888766 578889999999
Q ss_pred EEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 170 IIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 170 ~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
++||.++.+. ...+.++...+..+.++ +.++++++.|+.|++||+++. ..+.....+
T Consensus 161 ~~~d~~~~~~--~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~ 217 (293)
T d1p22a2 161 KVWNTSTCEF--VRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGH 217 (293)
T ss_dssp EEEETTTCCE--EEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCC
T ss_pred eeecCCCCcE--EEEEcccccccccccCC--CCeEEEecCCCEEEEEecccc---eeeeeeccc
Confidence 9999998876 66778888888877765 568999999999999999866 444444443
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=1.6e-19 Score=145.37 Aligned_cols=171 Identities=15% Similarity=0.242 Sum_probs=125.9
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccc-
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKY- 106 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~- 106 (271)
++|++|||||.||+|++||+ +..+.+|... |.+++|+|+ +|++|+.|+.+++|+. ..........
T Consensus 25 ~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~----V~~v~~~~~--~l~s~s~D~~~~~~~~---~~~~~~~~~~~ 95 (342)
T d2ovrb2 25 FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGG----VWSSQMRDN--IIISGSTDRTLKVWNA---ETGECIHTLYG 95 (342)
T ss_dssp EETTEEEEEETTSCEEEEETTTCCEEEECCCCSSC----EEEEEEETT--EEEEEETTSCEEEEET---TTTEEEEEECC
T ss_pred ECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCC----EEEEEeCCC--ccccceeccccccccc---ccccceecccc
Confidence 48999999999999999998 7788999999 999999874 9999999999999986 3222211100
Q ss_pred --e-------------------eeEEEeec---------------------cceee-----eEEEEeeCCceEEeEEecC
Q psy13856 107 --F-------------------KLTVYSTK---------------------LTRIL-----ILVRICGGDKWIEETKLEN 139 (271)
Q Consensus 107 --~-------------------~~~~~~~~---------------------~~~l~-----~~v~i~~~~~~~~~~~~~~ 139 (271)
. ...++... ...++ +.+++.+......+..+.+
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~ 175 (342)
T d2ovrb2 96 HTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG 175 (342)
T ss_dssp CSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECC
T ss_pred cceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcC
Confidence 0 00000000 11111 4455522222256677788
Q ss_pred CCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 140 h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
|...+..+.++ +.++++|+.||.|++||++.... ...+.+|...+.++++++ ++|++++.|+.|++|++.
T Consensus 176 ~~~~~~~~~~~------~~~l~s~~~dg~i~~~d~~~~~~--~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~i~iwd~~ 245 (342)
T d2ovrb2 176 HTNRVYSLQFD------GIHVVSGSLDTSIRVWDVETGNC--IHTLTGHQSLTSGMELKD--NILVSGNADSTVKIWDIK 245 (342)
T ss_dssp CSSCEEEEEEC------SSEEEEEETTSCEEEEETTTCCE--EEEECCCCSCEEEEEEET--TEEEEEETTSCEEEEETT
T ss_pred cccccccccCC------CCEEEEEeCCCeEEEeeccccee--eeEecccccceeEEecCC--CEEEEEcCCCEEEEEecc
Confidence 87777666553 57999999999999999998886 777889999998887764 699999999999999998
Q ss_pred CCC
Q psy13856 220 TDG 222 (271)
Q Consensus 220 ~~~ 222 (271)
...
T Consensus 246 ~~~ 248 (342)
T d2ovrb2 246 TGQ 248 (342)
T ss_dssp TCC
T ss_pred ccc
Confidence 663
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=1.7e-19 Score=145.22 Aligned_cols=142 Identities=17% Similarity=0.180 Sum_probs=105.5
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccce
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYF 107 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~ 107 (271)
+++..+++|+.||.|++||+ +..+.+|... +.++++++ ++|++++.|+.|++|+. ...+..
T Consensus 185 ~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~----v~~~~~~~--~~l~s~s~d~~i~iwd~---~~~~~~----- 250 (342)
T d2ovrb2 185 FDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSL----TSGMELKD--NILVSGNADSTVKIWDI---KTGQCL----- 250 (342)
T ss_dssp ECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSC----EEEEEEET--TEEEEEETTSCEEEEET---TTCCEE-----
T ss_pred CCCCEEEEEeCCCeEEEeecccceeeeEecccccc----eeEEecCC--CEEEEEcCCCEEEEEec---cccccc-----
Confidence 46777888888888888877 5666777776 76666653 57788888888888876 211111
Q ss_pred eeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeee--
Q psy13856 108 KLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIM-- 185 (271)
Q Consensus 108 ~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-- 185 (271)
........|...+.++.+++ +++++|+.||.|++||+++++. ...+
T Consensus 251 ------------------------~~~~~~~~~~~~~~~~~~~~------~~~~s~s~Dg~i~iwd~~tg~~--i~~~~~ 298 (342)
T d2ovrb2 251 ------------------------QTLQGPNKHQSAVTCLQFNK------NFVITSSDDGTVKLWDLKTGEF--IRNLVT 298 (342)
T ss_dssp ------------------------EEECSTTSCSSCEEEEEECS------SEEEEEETTSEEEEEETTTCCE--EEEEEE
T ss_pred ------------------------ccccccceeeeceeecccCC------CeeEEEcCCCEEEEEECCCCCE--EEEEec
Confidence 11222234667778887765 6999999999999999999876 3332
Q ss_pred ---ccCCCCeEEEEEecCCCEEEEEECCCc----EEEEEeCC
Q psy13856 186 ---NTFDDVVWNVSWSLTGDILTVSCGDNS----VSLWKENT 220 (271)
Q Consensus 186 ---~~h~~~v~~v~~~~~g~~l~s~s~D~~----v~iw~~~~ 220 (271)
.+|...|++++|+|++.+|++|+.||+ |++||++.
T Consensus 299 ~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 299 LESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340 (342)
T ss_dssp CTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred ccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence 367789999999999999999999985 99999874
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.80 E-value=3.9e-18 Score=138.68 Aligned_cols=139 Identities=6% Similarity=-0.170 Sum_probs=105.8
Q ss_pred ceecccCCCCCCCEEEEccCCC--eEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCC
Q psy13856 24 IETYTESPLRIGHTLISCDTQA--HIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSS 97 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~s~d~--~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~ 97 (271)
..+......|||+.|++++.+. .|++||. ...+..|... +.+++|+|++++|++++.++.+++|+. .
T Consensus 43 ~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~----v~~~~~spdg~~l~~~~~~~~~~~~~~---~ 115 (360)
T d1k32a3 43 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGN----VFAMGVDRNGKFAVVANDRFEIMTVDL---E 115 (360)
T ss_dssp SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCS----EEEEEECTTSSEEEEEETTSEEEEEET---T
T ss_pred CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCce----EEeeeecccccccceeccccccccccc---c
Confidence 3445566678999988776554 7999998 6677889888 999999999999999999999999998 5
Q ss_pred CCceeecc-----ceeeEEEeeccceee---------------eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCC
Q psy13856 98 SPACLQPK-----YFKLTVYSTKLTRIL---------------ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLS 156 (271)
Q Consensus 98 ~~~~~~~~-----~~~~~~~~~~~~~l~---------------~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~ 156 (271)
.+++.... ......++.++++++ +.+++ .... .....+..|...+..+.|+| +
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~--~~~~~~~~~~~~~~~~~~sp----d 189 (360)
T d1k32a3 116 TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEG--RKIFAATTENSHDYAPAFDA----D 189 (360)
T ss_dssp TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTT--TEEEECSCSSSBEEEEEECT----T
T ss_pred ccceeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeecccc--CceeeecccccccccccccC----C
Confidence 55554443 224566777777775 34555 2222 23344556778889999999 7
Q ss_pred CcEEEEEeCCCeEEEEEcC
Q psy13856 157 KCMIASCSQDRKVIIWTSN 175 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~ 175 (271)
+++|++++.|+.+.+|+..
T Consensus 190 g~~l~~~s~~~~~~~~d~~ 208 (360)
T d1k32a3 190 SKNLYYLSYRSLDPSPDRV 208 (360)
T ss_dssp SCEEEEEESCCCCCEECSS
T ss_pred CCEEEEEeCCCceEccccc
Confidence 9999999999999999854
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=1.5e-18 Score=140.19 Aligned_cols=172 Identities=10% Similarity=0.048 Sum_probs=128.3
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-c
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-Y 106 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~ 106 (271)
+++.+++++..|+.|++||. +....++... +.++.|+|++..+++++.|+.+++|+. .++.++... .
T Consensus 169 ~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~d~~i~i~d~---~~~~~~~~~~~ 241 (355)
T d1nexb2 169 GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR----IYSTIYDHERKRCISASMDTTIRIWDL---ENGELMYTLQG 241 (355)
T ss_dssp EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC----EEEEEEETTTTEEEEEETTSCEEEEET---TTCCEEEEECC
T ss_pred cccceeeeecccceeeeeecccccceeeeeccccc----cccccccccceeeecccccceEEeeec---ccccccccccc
Confidence 46889999999999999998 5566777777 889999999999999999999999998 666665544 2
Q ss_pred e--eeEEEeeccceee-----eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCce
Q psy13856 107 F--KLTVYSTKLTRIL-----ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVT 179 (271)
Q Consensus 107 ~--~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~ 179 (271)
+ ........++.++ +.|++++.. .....+..|...+.++.+.+. ++.++++|+ |+.|++||+++++.
T Consensus 242 h~~~v~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~---~~~~l~~g~-d~~i~vwd~~tg~~ 315 (355)
T d1nexb2 242 HTALVGLLRLSDKFLVSAAADGSIRGWDAN--DYSRKFSYHHTNLSAITTFYV---SDNILVSGS-ENQFNIYNLRSGKL 315 (355)
T ss_dssp CSSCCCEEEECSSEEEEECTTSEEEEEETT--TCCEEEEEECTTCCCCCEEEE---CSSEEEEEE-TTEEEEEETTTCCB
T ss_pred ccccccccccccceeeeeeccccccccccc--ccceecccccCCceEEEEEcC---CCCEEEEEe-CCEEEEEECCCCCE
Confidence 2 2222333456666 788884333 233445567777776654432 567776665 89999999999876
Q ss_pred eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 180 WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 180 ~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
. ...+.+|.++|++++|+|+ .++++++.||+++||.++
T Consensus 316 ~-~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~d 353 (355)
T d1nexb2 316 V-HANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353 (355)
T ss_dssp C-CSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEEE
T ss_pred E-EEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEEe
Confidence 2 2356789999999999987 578888999997777653
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.78 E-value=2e-17 Score=129.93 Aligned_cols=168 Identities=14% Similarity=0.128 Sum_probs=118.2
Q ss_pred CCCCEEEEccCCCeEEeccc------------------------------------------------eeeecccccccc
Q psy13856 33 RIGHTLISCDTQAHIGIRST------------------------------------------------ISLLQGSVYLRR 64 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~------------------------------------------------~~~~~~h~~~~~ 64 (271)
+++++|++|+.|+.|++|+. ...+..|...
T Consensus 63 ~~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 140 (293)
T d1p22a2 63 YDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA-- 140 (293)
T ss_dssp CCSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSC--
T ss_pred cccceeecccccccccccccccccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccc--
Confidence 47899999999999999997 0001122222
Q ss_pred ccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-ce--eeEEEeeccceee-----eEEEEeeCCceEEeEE
Q psy13856 65 ESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-YF--KLTVYSTKLTRIL-----ILVRICGGDKWIEETK 136 (271)
Q Consensus 65 ~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-~~--~~~~~~~~~~~l~-----~~v~i~~~~~~~~~~~ 136 (271)
+..+.+ ....+++++.|+.+++|+. .+++.+... .. ........+..++ +.+++.+......+..
T Consensus 141 --v~~~~~--~~~~~~~~s~d~~i~~~d~---~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 213 (293)
T d1p22a2 141 --VNVVDF--DDKYIVSASGDRTIKVWNT---STCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRV 213 (293)
T ss_dssp --EEEEEE--ETTEEEEEETTSEEEEEET---TTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEE
T ss_pred --ccccee--cccccccccCCCceeeecC---CCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeee
Confidence 333444 3457889999999999998 666665544 11 2223333455555 7788833333367778
Q ss_pred ecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCc-------eeeeeeeccCCCCeEEEEEecCCCEEEEEEC
Q psy13856 137 LENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYV-------TWTPFIMNTFDDVVWNVSWSLTGDILTVSCG 209 (271)
Q Consensus 137 ~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~ 209 (271)
+.+|...+..+. + ++.+|++|+.||.|++||+.... ......+.+|.+.|++++|+ +.+|++++.
T Consensus 214 ~~~~~~~v~~~~--~----~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~ 285 (293)
T d1p22a2 214 LEGHEELVRCIR--F----DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSH 285 (293)
T ss_dssp ECCCSSCEEEEE--C----CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCS
T ss_pred ecccceeeeecc--c----cceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEec
Confidence 888888887654 4 46799999999999999975321 11256778999999999984 568999999
Q ss_pred CCcEEEEE
Q psy13856 210 DNSVSLWK 217 (271)
Q Consensus 210 D~~v~iw~ 217 (271)
||+|+|||
T Consensus 286 Dg~i~iWD 293 (293)
T d1p22a2 286 DDTILIWD 293 (293)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEeC
Confidence 99999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.76 E-value=1.2e-17 Score=135.64 Aligned_cols=174 Identities=6% Similarity=-0.129 Sum_probs=136.0
Q ss_pred cCCCC-CCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeCCC--cEEEEEeecCCCCce
Q psy13856 29 ESPLR-IGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHE--AAKHLGTVQSSSPAC 101 (271)
Q Consensus 29 ~~~~~-~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~--~i~~~d~~~~~~~~~ 101 (271)
....| ||+++|+++. |.|.+||. ... .+|... |.+++|+|||++|++++.+. .+++||. ..+..
T Consensus 8 ~~fSP~dG~~~a~~~~-g~v~v~d~~~~~~~~-~~~~~~----v~~~~~spDg~~l~~~~~~~g~~v~v~d~---~~~~~ 78 (360)
T d1k32a3 8 EDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLK-VPEPLR----IRYVRRGGDTKVAFIHGTREGDFLGIYDY---RTGKA 78 (360)
T ss_dssp EEEEECGGGCEEEEET-TEEEEECTTSSBEEE-CSCCSC----EEEEEECSSSEEEEEEEETTEEEEEEEET---TTCCE
T ss_pred ccccCCCCCEEEEEEC-CeEEEEECCCCcEEE-ccCCCC----EEEEEECCCCCEEEEEEcCCCCEEEEEEC---CCCcE
Confidence 34556 9999999887 89999999 333 368888 99999999999998877553 7889998 66655
Q ss_pred eeccce----eeEEEeeccceee-----eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe------
Q psy13856 102 LQPKYF----KLTVYSTKLTRIL-----ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS------ 164 (271)
Q Consensus 102 ~~~~~~----~~~~~~~~~~~l~-----~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~------ 164 (271)
.+...+ ....+++++++++ +.+.+ ...+ .....+..|...+.+++|+| ++++|+.++
T Consensus 79 ~~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~sp----dg~~la~~~~~~~~~ 152 (360)
T d1k32a3 79 EKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG--KPTVIERSREAMITDFTISD----NSRFIAYGFPLKHGE 152 (360)
T ss_dssp EECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC--CEEEEEECSSSCCCCEEECT----TSCEEEEEEEECSST
T ss_pred EEeeCCCceEEeeeecccccccceecccccccccccccc--ceeeeeecccccccchhhcc----ceeeeeeeccccccc
Confidence 554422 4556788888888 55666 3333 56677788889999999999 799998543
Q ss_pred ----CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 165 ----QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 165 ----~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
.++.+++||...++ ...+..|...+..++|+|+|++|++++.|+.+.+|+...
T Consensus 153 ~~~~~~~~~~v~d~~~~~---~~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~ 209 (360)
T d1k32a3 153 TDGYVMQAIHVYDMEGRK---IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209 (360)
T ss_dssp TCSCCEEEEEEEETTTTE---EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred eeeccccceeeeccccCc---eeeecccccccccccccCCCCEEEEEeCCCceEcccccc
Confidence 45679999998876 445556777889999999999999999999999998754
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.71 E-value=1.2e-16 Score=127.96 Aligned_cols=127 Identities=7% Similarity=-0.067 Sum_probs=100.3
Q ss_pred eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceE
Q psy13856 53 ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWI 132 (271)
Q Consensus 53 ~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~ 132 (271)
++..++|.+. |++++|+|++++|++|+.|++|++||+. ... ...
T Consensus 4 v~~~~~h~d~----I~~l~fsp~~~~L~s~s~Dg~v~iwd~~---~~~-----------------------------~~~ 47 (342)
T d1yfqa_ 4 VQIEQAPKDY----ISDIKIIPSKSLLLITSWDGSLTVYKFD---IQA-----------------------------KNV 47 (342)
T ss_dssp EECSSCCSSC----EEEEEEEGGGTEEEEEETTSEEEEEEEE---TTT-----------------------------TEE
T ss_pred EEcCCCCCCC----EEEEEEeCCCCEEEEEECCCeEEEEEcc---CCC-----------------------------cce
Confidence 4567899999 9999999999999999999999999983 111 112
Q ss_pred EeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeecc-CCCCeEEEEEecCCCEEEEEECCC
Q psy13856 133 EETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNT-FDDVVWNVSWSLTGDILTVSCGDN 211 (271)
Q Consensus 133 ~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-h~~~v~~v~~~~~g~~l~s~s~D~ 211 (271)
......+|.++|.+++|+|. ++.+|++|+.|+.|++|+...... ...... +........+.++...+++++.|+
T Consensus 48 ~~~~~~~h~~~V~~v~f~~~---~~~~l~sg~~d~~v~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (342)
T d1yfqa_ 48 DLLQSLRYKHPLLCCNFIDN---TDLQIYVGTVQGEILKVDLIGSPS--FQALTNNEANLGICRICKYGDDKLIAASWDG 122 (342)
T ss_dssp EEEEEEECSSCEEEEEEEES---SSEEEEEEETTSCEEEECSSSSSS--EEECBSCCCCSCEEEEEEETTTEEEEEETTS
T ss_pred EEEEecCCCCCEEEEEEeCC---CCCEEEEcccccceeeeecccccc--ccccccccccccccccccccccccccccccc
Confidence 22333469999999999985 577999999999999999988765 333333 334445666777889999999999
Q ss_pred cEEEEEeCC
Q psy13856 212 SVSLWKENT 220 (271)
Q Consensus 212 ~v~iw~~~~ 220 (271)
.+++||++.
T Consensus 123 ~~~~wd~~~ 131 (342)
T d1yfqa_ 123 LIEVIDPRN 131 (342)
T ss_dssp EEEEECHHH
T ss_pred ccceeeccc
Confidence 999999854
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.71 E-value=3e-16 Score=131.45 Aligned_cols=93 Identities=9% Similarity=0.078 Sum_probs=70.3
Q ss_pred EEeEEecCCCcceEEEEEccCCCCCCcEEE-------EEeCCCeEEEEEcCCCceeeeee---------eccCCCCeEEE
Q psy13856 132 IEETKLENHSDWVRDVAWAPSWGLSKCMIA-------SCSQDRKVIIWTSNDYVTWTPFI---------MNTFDDVVWNV 195 (271)
Q Consensus 132 ~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~-------s~~~dg~i~iwd~~~~~~~~~~~---------~~~h~~~v~~v 195 (271)
+....+.+|...+..++|+| ++.+++ +++.|++|++||+.+++. ... +..|...|..+
T Consensus 294 ~~~~~l~g~~~~v~~v~~sP----dg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~--~~~~~~~~~~~~~~~~~~rv~~~ 367 (426)
T d1hzua2 294 KKVAELQGQGGGSLFIKTHP----KSSHLYVDTTFNPDARISQSVAVFDLKNLDA--KYQVLPIAEWADLGEGAKRVVQP 367 (426)
T ss_dssp SEEEEEECSSSCCCCEECCT----TCSEEEECCTTCSSHHHHTCEEEEETTCTTS--CCEEECHHHHHCCCSSCCCEEEE
T ss_pred eEeEEEecCCCceeEEEcCC----CCceEEEeecCCCCcccCCEEEEEECCCCCc--CeEEeccchhcccCCCCccEEEE
Confidence 44566778888999999999 689998 456689999999998764 222 23456679999
Q ss_pred EEecCCCEEEEE-----ECCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 196 SWSLTGDILTVS-----CGDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 196 ~~~~~g~~l~s~-----s~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
+|+|||++++.+ +.|+.|+|||.++. +....+.+.
T Consensus 368 ~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~---k~~~~i~~~ 407 (426)
T d1hzua2 368 EYNKRGDEVWFSVWNGKNDSSALVVVDDKTL---KLKAVVKDP 407 (426)
T ss_dssp EECSSSSEEEEEECCCTTSCCEEEEEETTTT---EEEEEECCT
T ss_pred EECCCCCEEEEEEecCCCCCCeEEEEECCCC---eEEEEECCC
Confidence 999999977543 34788999999887 454555553
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.64 E-value=3.2e-14 Score=114.34 Aligned_cols=86 Identities=9% Similarity=0.060 Sum_probs=64.9
Q ss_pred CCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 140 HSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 140 h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
|...+..+.+++ ++.+++.+. ++.+.+||..+++. ...+ .+...+.+++|+|||++|++++.|+.|++||.+
T Consensus 250 ~~~~~~~~~~~~----~~~~~~~~~-~~~v~v~d~~~~~~--~~~~-~~~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~ 321 (346)
T d1jmxb_ 250 LTELYFTGLRSP----KDPNQIYGV-LNRLAKYDLKQRKL--IKAA-NLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPD 321 (346)
T ss_dssp CSSCEEEEEECS----SCTTEEEEE-ESEEEEEETTTTEE--EEEE-ECSSCCCEEEECSSSSCEEEESBSSEEEEEETT
T ss_pred ccceeEEEEEeC----CCCEEEEec-CCeEEEEECCCCcE--EEEE-cCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECc
Confidence 445566677777 355555555 46799999998775 3333 244578999999999999999999999999999
Q ss_pred CCCceeEEEEecccchh
Q psy13856 220 TDGAWQCITEMGKTSEQ 236 (271)
Q Consensus 220 ~~~~~~~~~~~~~~~~~ 236 (271)
+. +.+.+++...+.
T Consensus 322 t~---~~i~~i~~p~g~ 335 (346)
T d1jmxb_ 322 TL---EKVKNIKLPGGD 335 (346)
T ss_dssp TT---EEEEEEECSSSC
T ss_pred cC---CEEEEEECCCCC
Confidence 87 888887765544
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.64 E-value=2.2e-14 Score=114.89 Aligned_cols=62 Identities=10% Similarity=0.003 Sum_probs=48.7
Q ss_pred CEEEEccCCCeEEeccc-----eeeecc--ccccccccceEEEEcCCCCeE-EEEeCCCcEEEEEeecCCCCceeec
Q psy13856 36 HTLISCDTQAHIGIRST-----ISLLQG--SVYLRRESNKAGALSPKLNRS-ATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 36 ~~l~s~s~d~~i~lwd~-----~~~~~~--h~~~~~~~i~~~~~s~~~~~l-~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
+++++++.|++|++||. +..+.. +... +.+++|+|||+++ ++++.++.|.+||. .+++.+..
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~----~~~i~~spDg~~l~v~~~~~~~v~v~D~---~t~~~~~~ 71 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPT----PMVPMVAPGGRIAYATVNKSESLVKIDL---VTGETLGR 71 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTC----CCCEEECTTSSEEEEEETTTTEEEEEET---TTCCEEEE
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCC----ccEEEECCCCCEEEEEECCCCeEEEEEC---CCCcEEEE
Confidence 57999999999999999 444543 3344 6799999999987 56678999999998 66665543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.60 E-value=4.3e-13 Score=105.66 Aligned_cols=186 Identities=11% Similarity=-0.003 Sum_probs=115.1
Q ss_pred ccCCCCCCCEE-EEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEE-EEeCCCcEEEEEeecCCCCc
Q psy13856 28 TESPLRIGHTL-ISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSA-TSSFHEAAKHLGTVQSSSPA 100 (271)
Q Consensus 28 ~~~~~~~g~~l-~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~-s~s~d~~i~~~d~~~~~~~~ 100 (271)
.....|||++| ++++.++.|++||+ +..+..+.. +..++|++++..++ ++..+..+.+|+. .++.
T Consensus 36 ~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ 107 (301)
T d1l0qa2 36 GAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-----PQGVAVSPDGKQVYVTNMASSTLSVIDT---TSNT 107 (301)
T ss_dssp EEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-----EEEEEECTTSSEEEEEETTTTEEEEEET---TTTE
T ss_pred EEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-----ccccccccccccccccccccceeeeccc---ccce
Confidence 34455799976 67788999999998 555555554 57899999988555 4556677888887 5544
Q ss_pred eeeccce----eeEEEeeccceee------eEEE------------------------------------------EeeC
Q psy13856 101 CLQPKYF----KLTVYSTKLTRIL------ILVR------------------------------------------ICGG 128 (271)
Q Consensus 101 ~~~~~~~----~~~~~~~~~~~l~------~~v~------------------------------------------i~~~ 128 (271)
....... ....++.++..+. ..+. +...
T Consensus 108 ~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 187 (301)
T d1l0qa2 108 VAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDT 187 (301)
T ss_dssp EEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred eeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeecccccccccccc
Confidence 4433211 1222222322221 0000 1000
Q ss_pred CceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe---CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEE-
Q psy13856 129 DKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS---QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDIL- 204 (271)
Q Consensus 129 ~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l- 204 (271)
........+. .......+.+++ ++..++.++ .++.|++||..+++. ...+.. ...+.+++|+|||++|
T Consensus 188 ~~~~~~~~~~-~~~~~~~~~~~~----~g~~~~v~~~~~~~~~v~v~D~~t~~~--~~~~~~-~~~~~~va~spdg~~l~ 259 (301)
T d1l0qa2 188 VTNSVIDTVK-VEAAPSGIAVNP----EGTKAYVTNVDKYFNTVSMIDTGTNKI--TARIPV-GPDPAGIAVTPDGKKVY 259 (301)
T ss_dssp TTTEEEEEEE-CSSEEEEEEECT----TSSEEEEEEECSSCCEEEEEETTTTEE--EEEEEC-CSSEEEEEECTTSSEEE
T ss_pred cceeeeeccc-ccCCcceeeccc----cccccccccccceeeeeeeeecCCCeE--EEEEcC-CCCEEEEEEeCCCCEEE
Confidence 0001111122 234456788888 566665443 347899999998775 344443 4568999999999987
Q ss_pred EEEECCCcEEEEEeCCCCceeEEEEecc
Q psy13856 205 TVSCGDNSVSLWKENTDGAWQCITEMGK 232 (271)
Q Consensus 205 ~s~s~D~~v~iw~~~~~~~~~~~~~~~~ 232 (271)
++++.|++|++||++++ +.+.++..
T Consensus 260 va~~~~~~i~v~D~~t~---~~~~~~~v 284 (301)
T d1l0qa2 260 VALSFCNTVSVIDTATN---TITATMAV 284 (301)
T ss_dssp EEETTTTEEEEEETTTT---EEEEEEEC
T ss_pred EEECCCCeEEEEECCCC---eEEEEEeC
Confidence 56677999999999987 66666643
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.57 E-value=6.4e-13 Score=111.17 Aligned_cols=173 Identities=6% Similarity=-0.028 Sum_probs=121.1
Q ss_pred CEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce--e---ecc
Q psy13856 36 HTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC--L---QPK 105 (271)
Q Consensus 36 ~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~--~---~~~ 105 (271)
-++++.+.||+|.|||. +..+..+. . +..++|||||+++++++.|+++++||+ .+++. . ...
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~----~~~v~fSpDG~~l~~~s~dg~v~~~d~---~t~~~~~~~~i~~~ 104 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTVLDTGY-A----VHISRLSASGRYLFVIGRDGKVNMIDL---WMKEPTTVAEIKIG 104 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEEEECSS-C----EEEEEECTTSCEEEEEETTSEEEEEET---TSSSCCEEEEEECC
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEEEeCCC-C----eeEEEECCCCCEEEEEcCCCCEEEEEe---eCCCceEEEEEecC
Confidence 34699999999999999 66666653 4 789999999999999999999999998 44332 1 111
Q ss_pred -ceeeEEE----eeccceee------eEEEEeeCCceEEeEEecCC-----------CcceEEEEEccCCCCCCc-EEEE
Q psy13856 106 -YFKLTVY----STKLTRIL------ILVRICGGDKWIEETKLENH-----------SDWVRDVAWAPSWGLSKC-MIAS 162 (271)
Q Consensus 106 -~~~~~~~----~~~~~~l~------~~v~i~~~~~~~~~~~~~~h-----------~~~v~~v~~~p~~~~~~~-~l~s 162 (271)
.....++ +.++++++ +.+++.+....+.+..+..| ......+.++| ++. ++++
T Consensus 105 ~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~----dg~~~~vs 180 (432)
T d1qksa2 105 SEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASH----YRPEFIVN 180 (432)
T ss_dssp SEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECS----SSSEEEEE
T ss_pred CCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECC----CCCEEEEE
Confidence 1222333 34677764 67777222222455555443 34456788998 455 4567
Q ss_pred EeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEEC-CCcEEEEEeCCC
Q psy13856 163 CSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG-DNSVSLWKENTD 221 (271)
Q Consensus 163 ~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-D~~v~iw~~~~~ 221 (271)
...++.+.+||..+.+...... ..+...+..++|+|+|+++++++. ++.+.+++....
T Consensus 181 ~~~~~~i~~~d~~~~~~~~~~~-i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~ 239 (432)
T d1qksa2 181 VKETGKILLVDYTDLNNLKTTE-ISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG 239 (432)
T ss_dssp ETTTTEEEEEETTCSSEEEEEE-EECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT
T ss_pred EccCCeEEEEEccCCCcceEEE-EcccCccccceECCCCCEEEEeccccceEEEeecccc
Confidence 7778999999998876422222 245567899999999998888776 567888888765
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.56 E-value=1e-13 Score=116.05 Aligned_cols=139 Identities=6% Similarity=0.010 Sum_probs=88.6
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc----------eeeeccccccccccceEEEEcCCCCeE-EEEeCCCcEEEEEee
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST----------ISLLQGSVYLRRESNKAGALSPKLNRS-ATSSFHEAAKHLGTV 94 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~----------~~~~~~h~~~~~~~i~~~~~s~~~~~l-~s~s~d~~i~~~d~~ 94 (271)
.+.....|||+++++++.|+.|++||+ +.....|.+. +.+.+|+|||++| ++++.++.+++||.
T Consensus 64 ~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~----~~s~~~SpDG~~l~vs~~~~~~v~i~d~- 138 (432)
T d1qksa2 64 VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI----ETSKMEGWEDKYAIAGAYWPPQYVIMDG- 138 (432)
T ss_dssp EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEE----EECCSTTCTTTEEEEEEEETTEEEEEET-
T ss_pred eeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCe----EEecccCCCCCEEEEEcCCCCeEEEEeC-
Confidence 345556689999999999999999997 2223456666 7777889999975 78889999999998
Q ss_pred cCCCCceeeccce----------------eeEEEeeccceee------eEEEE-e-eCCceEEeEEecCCCcceEEEEEc
Q psy13856 95 QSSSPACLQPKYF----------------KLTVYSTKLTRIL------ILVRI-C-GGDKWIEETKLENHSDWVRDVAWA 150 (271)
Q Consensus 95 ~~~~~~~~~~~~~----------------~~~~~~~~~~~l~------~~v~i-~-~~~~~~~~~~~~~h~~~v~~v~~~ 150 (271)
.+++....... ....++.++..+. +.+.+ . .+.....+..+. +......+.|+
T Consensus 139 --~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~-~g~~~~~~~~s 215 (432)
T d1qksa2 139 --ETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLD 215 (432)
T ss_dssp --TTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEEC
T ss_pred --ccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEc-ccCccccceEC
Confidence 66665543210 1123444555543 45555 1 122112222222 44567788888
Q ss_pred cCCCCCCcEEEEEeC-CCeEEEEEcCC
Q psy13856 151 PSWGLSKCMIASCSQ-DRKVIIWTSND 176 (271)
Q Consensus 151 p~~~~~~~~l~s~~~-dg~i~iwd~~~ 176 (271)
| +++++++++. ++.+.++|...
T Consensus 216 p----dg~~~~va~~~~~~v~v~d~~~ 238 (432)
T d1qksa2 216 G----SHRYFITAANARNKLVVIDTKE 238 (432)
T ss_dssp T----TSCEEEEEEGGGTEEEEEETTT
T ss_pred C----CCCEEEEeccccceEEEeeccc
Confidence 8 5776655554 45666776654
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.52 E-value=1.2e-13 Score=115.42 Aligned_cols=144 Identities=8% Similarity=-0.079 Sum_probs=99.6
Q ss_pred CCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceee
Q psy13856 35 GHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKL 109 (271)
Q Consensus 35 g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~ 109 (271)
+-++++.+.||.|++||. +..+..|. . +.+++|||||+++++++.|+++++||+ .+++....
T Consensus 32 ~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~----~~~vafSPDGk~l~~~~~d~~v~vwd~---~t~~~~~~----- 98 (426)
T d1hzua2 32 NLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-A----VHISRMSASGRYLLVIGRDARIDMIDL---WAKEPTKV----- 98 (426)
T ss_dssp GEEEEEETTTTEEEEEETTTCSEEEEEECCS-S----EEEEEECTTSCEEEEEETTSEEEEEET---TSSSCEEE-----
T ss_pred eEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-C----eeEEEECCCCCEEEEEeCCCCEEEEEc---cCCceeEE-----
Confidence 346788999999999999 66777664 4 789999999999999999999999998 44433221
Q ss_pred EEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEE-EEEeCCCeEEEEEcCCCceeeeeeeccC
Q psy13856 110 TVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMI-ASCSQDRKVIIWTSNDYVTWTPFIMNTF 188 (271)
Q Consensus 110 ~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~h 188 (271)
..+....+|.+.+.++.|+| ||+++ +++..++.+++||...... ......|
T Consensus 99 ----------------------~~i~~~~~~~~~~~s~~~sp----DG~~l~v~~~~~~~v~i~d~~~~~~--~~~~~~~ 150 (426)
T d1hzua2 99 ----------------------AEIKIGIEARSVESSKFKGY----EDRYTIAGAYWPPQFAIMDGETLEP--KQIVSTR 150 (426)
T ss_dssp ----------------------EEEECCSEEEEEEECCSTTC----TTTEEEEEEEESSEEEEEETTTCCE--EEEEECC
T ss_pred ----------------------EEEeCCCCCcceEEeeeecC----CCCEEEEeecCCCeEEEEcCCccce--eEEeecc
Confidence 12233345667777788888 78876 5555899999999998775 4444444
Q ss_pred C-----------CCeEEEEEecCCCEEEEEEC-CCcEEEEEeC
Q psy13856 189 D-----------DVVWNVSWSLTGDILTVSCG-DNSVSLWKEN 219 (271)
Q Consensus 189 ~-----------~~v~~v~~~~~g~~l~s~s~-D~~v~iw~~~ 219 (271)
. .....+.+++++..++.... .+.+.+++..
T Consensus 151 ~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~ 193 (426)
T d1hzua2 151 GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYK 193 (426)
T ss_dssp EECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECS
T ss_pred CCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEec
Confidence 3 33445566666665555443 3445444443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.44 E-value=3.9e-12 Score=101.59 Aligned_cols=147 Identities=10% Similarity=-0.030 Sum_probs=106.3
Q ss_pred EEEEccCCCeEEeccc-----eeee--ccccccccccceEEEEcCCCCeEEEEe-CCCcEEEEEeecCCCCceeecccee
Q psy13856 37 TLISCDTQAHIGIRST-----ISLL--QGSVYLRRESNKAGALSPKLNRSATSS-FHEAAKHLGTVQSSSPACLQPKYFK 108 (271)
Q Consensus 37 ~l~s~s~d~~i~lwd~-----~~~~--~~h~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~~~d~~~~~~~~~~~~~~~~ 108 (271)
.+++++.|++|++|++ +..+ ..|.+. +.+++|+|||++|++++ .|+.|++|++. ......
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~----v~~la~spDG~~L~v~~~~d~~i~~~~i~---~~~~~~----- 73 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQ----VQPMVVSPDKRYLYVGVRPEFRVLAYRIA---PDDGAL----- 73 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSC----CCCEEECTTSSEEEEEETTTTEEEEEEEC---TTTCCE-----
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCC----EeEEEEeCCCCEEEEEECCCCeEEEEEEe---CCCCcE-----
Confidence 4688889999999997 2333 367777 89999999999885554 58999999982 211110
Q ss_pred eEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC-CCeEEEEEcCCCceeeeeeecc
Q psy13856 109 LTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ-DRKVIIWTSNDYVTWTPFIMNT 187 (271)
Q Consensus 109 ~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~ 187 (271)
..... ..+...+..++|+| |++++++++. ++.+.+|+..............
T Consensus 74 -----------------------~~~~~-~~~~~~p~~l~~sp----Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~ 125 (333)
T d1ri6a_ 74 -----------------------TFAAE-SALPGSLTHISTDH----QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE 125 (333)
T ss_dssp -----------------------EEEEE-EECSSCCSEEEECT----TSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC
T ss_pred -----------------------EEeee-cccCCCceEEEEcC----CCCEEeecccCCCceeeeccccccceecccccC
Confidence 11111 12345567899999 7898888875 7789999988766433444556
Q ss_pred CCCCeEEEEEecCCCEEEEEEC-CCcEEEEEeCCCCc
Q psy13856 188 FDDVVWNVSWSLTGDILTVSCG-DNSVSLWKENTDGA 223 (271)
Q Consensus 188 h~~~v~~v~~~~~g~~l~s~s~-D~~v~iw~~~~~~~ 223 (271)
+...+.++.++|++++++.++. +..+.+|+......
T Consensus 126 ~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~ 162 (333)
T d1ri6a_ 126 GLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH 162 (333)
T ss_dssp CCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred CCccceEEEeeecceeeeccccccceeeEEEeccCCc
Confidence 6778889999999999888875 56799999876543
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.41 E-value=1.1e-10 Score=91.51 Aligned_cols=166 Identities=10% Similarity=0.075 Sum_probs=114.2
Q ss_pred EEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeE-EEEeCCCcEEEEEeecCCCCceeeccce----
Q psy13856 38 LISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRS-ATSSFHEAAKHLGTVQSSSPACLQPKYF---- 107 (271)
Q Consensus 38 l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l-~s~s~d~~i~~~d~~~~~~~~~~~~~~~---- 107 (271)
+++++.|++|.+||+ ++.+... .. +..++|+|||++| ++++.++.|++||. .+++.+.....
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~----p~~va~spdG~~l~v~~~~~~~i~v~d~---~t~~~~~~~~~~~~~ 76 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG-SN----PMGAVISPDGTKVYVANAHSNDVSIIDT---ATNNVIATVPAGSSP 76 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS-SS----EEEEEECTTSSEEEEEEGGGTEEEEEET---TTTEEEEEEECSSSE
T ss_pred EEEECCCCEEEEEECCCCeEEEEEECC-CC----ceEEEEeCCCCEEEEEECCCCEEEEEEC---CCCceeeeeeccccc
Confidence 567888999999998 4444433 33 6899999999977 56778999999998 77777665421
Q ss_pred eeEEEeeccceee------eEEEE--eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEE-EEEeCCCeEEEEEcCCCc
Q psy13856 108 KLTVYSTKLTRIL------ILVRI--CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMI-ASCSQDRKVIIWTSNDYV 178 (271)
Q Consensus 108 ~~~~~~~~~~~l~------~~v~i--~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l-~s~~~dg~i~iwd~~~~~ 178 (271)
....+..++..+. ..+.+ ...+ +....+. +.....++.++| ++..+ +++..++.+.+|+..+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~----dg~~~~~~~~~~~~~~~~~~~~~~ 149 (301)
T d1l0qa2 77 QGVAVSPDGKQVYVTNMASSTLSVIDTTSN--TVAGTVK-TGKSPLGLALSP----DGKKLYVTNNGDKTVSVINTVTKA 149 (301)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEETTTT--EEEEEEE-CSSSEEEEEECT----TSSEEEEEETTTTEEEEEETTTTE
T ss_pred cccccccccccccccccccceeeecccccc--eeeeecc-ccccceEEEeec----CCCeeeeeeccccceeeeeccccc
Confidence 2233444455443 44555 2233 4555555 445678899999 46554 666678999999998877
Q ss_pred eeeeeeeccCCCCeEEEEEecCCCEEEEEECC-CcEEEEEeCCC
Q psy13856 179 TWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD-NSVSLWKENTD 221 (271)
Q Consensus 179 ~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D-~~v~iw~~~~~ 221 (271)
. ...+. +...+..+.++|++..+++++.+ +.+.+|+....
T Consensus 150 ~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (301)
T d1l0qa2 150 V--INTVS-VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTN 190 (301)
T ss_dssp E--EEEEE-CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred e--eeecc-cCCCceEEEeeccccceeeecccccccccccccce
Confidence 4 33333 44568889999999988888876 45666665443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.31 E-value=1.8e-10 Score=91.69 Aligned_cols=66 Identities=5% Similarity=-0.183 Sum_probs=44.7
Q ss_pred cccCCCCCCCEE-EEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeC-CCcEEEEEe
Q psy13856 27 YTESPLRIGHTL-ISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSF-HEAAKHLGT 93 (271)
Q Consensus 27 ~~~~~~~~g~~l-~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~~~d~ 93 (271)
......|||++| +++..|+.|++|++ ...+..+.. ....+..++|+|||++|++++. ++.+.+|+.
T Consensus 40 ~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~-~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~ 112 (333)
T d1ri6a_ 40 QPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA-LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRL 112 (333)
T ss_dssp CCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE-CSSCCSEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred eEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc-cCCCceEEEEcCCCCEEeecccCCCceeeecc
Confidence 344446799987 55566899999987 212222211 1112678999999999988875 667878876
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.29 E-value=2e-09 Score=87.14 Aligned_cols=71 Identities=11% Similarity=0.042 Sum_probs=54.9
Q ss_pred CcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCE--EEEEECCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 157 KCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDI--LTVSCGDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~--l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
+..+++...++.+.+||..+++. ...+ .+...+..++|+|||+. +++++.|++|++||..++ +.+.++..+
T Consensus 288 ~~~~~~~~~~~~v~~~d~~t~~~--~~~~-~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg---~~~~~~~~~ 360 (373)
T d2madh_ 288 QSAWKLHAAAKEVTSVTGLVGQT--SSQI-SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAG---DQDQSTVEL 360 (373)
T ss_pred CceEEeecCCCeEEEEECCCCcE--EEEe-cCCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCC---CEEEEECCC
Confidence 34455667778899999988875 3333 46677899999999984 467889999999999988 677777654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.20 E-value=1.6e-10 Score=92.98 Aligned_cols=78 Identities=12% Similarity=0.147 Sum_probs=55.7
Q ss_pred EEEEccCCCCCCcEEEEEeCC----------CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCC--EEEEEECCCcE
Q psy13856 146 DVAWAPSWGLSKCMIASCSQD----------RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGD--ILTVSCGDNSV 213 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l~s~~~d----------g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~--~l~s~s~D~~v 213 (271)
.++++| ++..++....+ ..|.+||..+++. ...+. +...+.+++|+|||+ ++++++.|++|
T Consensus 253 ~~~~~~----d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~--~~~~~-~~~~~~~~a~spDG~~~l~v~~~~d~~i 325 (355)
T d2bbkh_ 253 QVAYHR----ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER--LAKFE-MGHEIDSINVSQDEKPLLYALSTGDKTL 325 (355)
T ss_dssp CEEEET----TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE--EEEEE-EEEEECEEEECCSSSCEEEEEETTTTEE
T ss_pred EEEEeC----CCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE--EEEec-CCCCEEEEEEcCCCCeEEEEEECCCCEE
Confidence 467777 56666554433 4699999998775 33333 345688999999997 45667779999
Q ss_pred EEEEeCCCCceeEEEEeccc
Q psy13856 214 SLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 214 ~iw~~~~~~~~~~~~~~~~~ 233 (271)
++||..++ +.+.++...
T Consensus 326 ~v~D~~tg---~~~~~i~~~ 342 (355)
T d2bbkh_ 326 YIHDAESG---EELRSVNQL 342 (355)
T ss_dssp EEEETTTC---CEEEEECCC
T ss_pred EEEECCCC---CEEEEEeCc
Confidence 99999988 667777643
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.05 E-value=1.3e-09 Score=88.52 Aligned_cols=60 Identities=12% Similarity=-0.008 Sum_probs=45.5
Q ss_pred eEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCC-E-EEEEECCCcEEEEEeCCCCceeEEEEeccc
Q psy13856 168 KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGD-I-LTVSCGDNSVSLWKENTDGAWQCITEMGKT 233 (271)
Q Consensus 168 ~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~-l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~ 233 (271)
.+.+||..+++. ...+. +...+..++|+|||+ + ++++..|++|++||..++ +.+.+++..
T Consensus 295 ~v~v~D~~t~~~--~~~~~-~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg---k~~~~i~~g 356 (368)
T d1mdah_ 295 NTSSVTASVGQT--SGPIS-NGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD---QDQSSVELD 356 (368)
T ss_dssp EEEEEESSSCCE--EECCE-EEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC---EEEEECCCC
T ss_pred eEEEEECCCCcE--eEEec-CCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC---CEEEEEECC
Confidence 588999988774 33333 345788999999996 3 456677999999999988 777777654
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.02 E-value=1.3e-09 Score=86.79 Aligned_cols=111 Identities=8% Similarity=0.009 Sum_probs=82.9
Q ss_pred EEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEec-CCCcceEEEE
Q psy13856 70 GALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLE-NHSDWVRDVA 148 (271)
Q Consensus 70 ~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~-~h~~~v~~v~ 148 (271)
++|+++++++++++.|++|.+||+ .++ +.+.++. .|...+.+++
T Consensus 2 ~a~~~~~~~l~~~~~~~~v~v~D~---~t~--------------------------------~~~~t~~~~~~~~p~~l~ 46 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNYPNNLHVVDV---ASD--------------------------------TVYKSCVMPDKFGPGTAM 46 (346)
T ss_dssp CCCCTTCEEEEEEETTTEEEEEET---TTT--------------------------------EEEEEEECSSCCSSCEEE
T ss_pred ccCCCCCcEEEEEcCCCEEEEEEC---CCC--------------------------------CEEEEEEcCCCCCcceEE
Confidence 478999999999999999999998 333 3444443 3455678999
Q ss_pred EccCCCCCCcEE-EEEeCCCeEEEEEcCCCceeeeeeeccC------CCCeEEEEEecCCCEEEEEE------------C
Q psy13856 149 WAPSWGLSKCMI-ASCSQDRKVIIWTSNDYVTWTPFIMNTF------DDVVWNVSWSLTGDILTVSC------------G 209 (271)
Q Consensus 149 ~~p~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~h------~~~v~~v~~~~~g~~l~s~s------------~ 209 (271)
|+| |++++ ++++.++.|.+||+.+++. ...+... ...+..++|+|||+++++++ .
T Consensus 47 ~sp----DG~~l~v~~~~~~~v~~~d~~t~~~--~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~ 120 (346)
T d1jmxb_ 47 MAP----DNRTAYVLNNHYGDIYGIDLDTCKN--TFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVK 120 (346)
T ss_dssp ECT----TSSEEEEEETTTTEEEEEETTTTEE--EEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred ECC----CCCEEEEEECCCCcEEEEeCccCee--eeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccC
Confidence 999 68776 6666899999999998875 3332211 22456899999999988775 4
Q ss_pred CCcEEEEEeCCC
Q psy13856 210 DNSVSLWKENTD 221 (271)
Q Consensus 210 D~~v~iw~~~~~ 221 (271)
+..+.+|+..++
T Consensus 121 ~~~i~~~~~~~~ 132 (346)
T d1jmxb_ 121 PPRLEVFSTADG 132 (346)
T ss_dssp CCEEEEEEGGGG
T ss_pred cceEEEEecccc
Confidence 677888887654
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.00 E-value=9.9e-10 Score=92.18 Aligned_cols=149 Identities=13% Similarity=0.047 Sum_probs=103.1
Q ss_pred cccceecccCCCCCCCEEEEccCCCeEEeccc-----ee-----eeccccccccccceEEEEcCCCCeEEEEeC------
Q psy13856 21 TLEIETYTESPLRIGHTLISCDTQAHIGIRST-----IS-----LLQGSVYLRRESNKAGALSPKLNRSATSSF------ 84 (271)
Q Consensus 21 ~~~~~~~~~~~~~~g~~l~s~s~d~~i~lwd~-----~~-----~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~------ 84 (271)
.+....+....+++++++.. .|+.+.+||. .. .+..|... |.++.|||||++|+.++.
T Consensus 14 ~~~~~~~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~----i~~~~~SpDg~~i~~~~~~~~~~r 87 (470)
T d2bgra1 14 TYRLKLYSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHS----INDYSISPDGQFILLEYNYVKQWR 87 (470)
T ss_dssp CSCCCCCCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSC----CCEEEECTTSSEEEEEEEEEECSS
T ss_pred ceeccccCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCc----cceeEECCCCCEEEEEECCcceee
Confidence 34455566666778887764 4678999998 22 33444566 899999999999988754
Q ss_pred ---CCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEE
Q psy13856 85 ---HEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIA 161 (271)
Q Consensus 85 ---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~ 161 (271)
++.+.+||+ ..+ ....+..|...+..+.|+| ||.++|
T Consensus 88 ~s~~~~~~l~d~---------------------------------~~~---~~~~l~~~~~~~~~~~~SP----DG~~ia 127 (470)
T d2bgra1 88 HSYTASYDIYDL---------------------------------NKR---QLITEERIPNNTQWVTWSP----VGHKLA 127 (470)
T ss_dssp SCEEEEEEEEET---------------------------------TTT---EECCSSCCCTTEEEEEECS----STTCEE
T ss_pred eccCceEEEEEC---------------------------------CCC---cccccccCCcccccccccc----Ccceee
Confidence 345556665 222 2344567888899999999 799999
Q ss_pred EEeCCCeEEEEEcCCCceeeeeeecc------------------CCCCeEEEEEecCCCEEEEEECCCc-EEEEEe
Q psy13856 162 SCSQDRKVIIWTSNDYVTWTPFIMNT------------------FDDVVWNVSWSLTGDILTVSCGDNS-VSLWKE 218 (271)
Q Consensus 162 s~~~dg~i~iwd~~~~~~~~~~~~~~------------------h~~~v~~v~~~~~g~~l~s~s~D~~-v~iw~~ 218 (271)
... ++.+.+|+...+.. ...... ..+....+.|+|||+.|+....|.+ +..|.+
T Consensus 128 ~~~-~~~l~~~~~~~g~~--~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 128 YVW-NNDIYVKIEPNLPS--YRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp EEE-TTEEEEESSTTSCC--EECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred Eee-cccceEEECCCCce--eeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEE
Confidence 865 77899999887764 222111 1233456789999999999887643 555544
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.89 E-value=1.7e-08 Score=79.71 Aligned_cols=104 Identities=11% Similarity=0.032 Sum_probs=77.5
Q ss_pred CeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEec--CCCcceEEEEEccCCC
Q psy13856 77 NRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLE--NHSDWVRDVAWAPSWG 154 (271)
Q Consensus 77 ~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~--~h~~~v~~v~~~p~~~ 154 (271)
+++++++.|++|++||. +++ +.+.++. .+...+.+++|+|
T Consensus 2 ~~~vt~~~d~~v~v~D~---~s~--------------------------------~~~~~i~~~~~~~~~~~i~~sp--- 43 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDT---EKM--------------------------------AVDKVITIADAGPTPMVPMVAP--- 43 (337)
T ss_dssp EEEEEEETTTEEEEEET---TTT--------------------------------EEEEEEECTTCTTCCCCEEECT---
T ss_pred eEEEEEcCCCEEEEEEC---CCC--------------------------------eEEEEEECCCCCCCccEEEECC---
Confidence 47899999999999998 332 3344443 3445678899999
Q ss_pred CCCcEE-EEEeCCCeEEEEEcCCCceeeeeeeccCC-----CCeEEEEEecCCCEEEEEE------------CCCcEEEE
Q psy13856 155 LSKCMI-ASCSQDRKVIIWTSNDYVTWTPFIMNTFD-----DVVWNVSWSLTGDILTVSC------------GDNSVSLW 216 (271)
Q Consensus 155 ~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~h~-----~~v~~v~~~~~g~~l~s~s------------~D~~v~iw 216 (271)
||+++ ++++.++.|.+||+.+++. ...+..+. ..+..++|+|++.+++++. .+..+.+|
T Consensus 44 -Dg~~l~v~~~~~~~v~v~D~~t~~~--~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~ 120 (337)
T d1pbyb_ 44 -GGRIAYATVNKSESLVKIDLVTGET--LGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY 120 (337)
T ss_dssp -TSSEEEEEETTTTEEEEEETTTCCE--EEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred -CCCEEEEEECCCCeEEEEECCCCcE--EEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeec
Confidence 78876 5677899999999999876 44443332 3456799999999988776 35678888
Q ss_pred EeCCC
Q psy13856 217 KENTD 221 (271)
Q Consensus 217 ~~~~~ 221 (271)
|..+.
T Consensus 121 d~~~~ 125 (337)
T d1pbyb_ 121 DAETL 125 (337)
T ss_dssp ETTTT
T ss_pred cccCC
Confidence 88765
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=98.75 E-value=1.1e-06 Score=70.50 Aligned_cols=181 Identities=7% Similarity=-0.084 Sum_probs=107.1
Q ss_pred ceecccCCCCCCCEEEEc-----cCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEe----------
Q psy13856 24 IETYTESPLRIGHTLISC-----DTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSS---------- 83 (271)
Q Consensus 24 ~~~~~~~~~~~g~~l~s~-----s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s---------- 83 (271)
-......+.|||..++.. +.++.|.+||. +..+..+. ...++|+|||++|++++
T Consensus 21 ~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~------~~~~a~SpDG~~l~va~~~~~~~~~~~ 94 (373)
T d2madh_ 21 GPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF------LPNPVAAHSGSEFALASTSFSRIAKGK 94 (373)
T ss_pred CCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCC------CccEEEcCCCCEEEEEeecCCcccccc
Confidence 344555677899987654 34467889987 44444332 34789999999998875
Q ss_pred CCCcEEEEEeecCCCCceeeccce------------eeEEEeeccceee-------eEEEEeeCCceEEeEEecCCCcce
Q psy13856 84 FHEAAKHLGTVQSSSPACLQPKYF------------KLTVYSTKLTRIL-------ILVRICGGDKWIEETKLENHSDWV 144 (271)
Q Consensus 84 ~d~~i~~~d~~~~~~~~~~~~~~~------------~~~~~~~~~~~l~-------~~v~i~~~~~~~~~~~~~~h~~~v 144 (271)
.++.|++||. .+++....... ....++.+++.+. +.+.+..... .....+....
T Consensus 95 ~~~~v~v~D~---~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~----~~~~~~~~~~ 167 (373)
T d2madh_ 95 RTDYVEVFDP---VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGG----SSDDQLLSSP 167 (373)
T ss_pred cceEEEEEEC---CCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccC----CeEEEEeccc
Confidence 4578999998 66666544311 1123344444332 1222211110 1112234456
Q ss_pred EEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeee--c--cCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 145 RDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIM--N--TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 145 ~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~--~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
.++.++|. ....+++.+.|+.+.+|+............ . ++......+.+.+++.+ +..+.++.+.+|+...
T Consensus 168 ~~~~~s~~---g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~ 243 (373)
T d2madh_ 168 TCYHIHPG---APSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYSGKILQADISA 243 (373)
T ss_pred eeEEEecC---CCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCCceEEEEEcCC
Confidence 68889995 345668899999999999988764211111 1 11122344555666554 4555788899998875
Q ss_pred C
Q psy13856 221 D 221 (271)
Q Consensus 221 ~ 221 (271)
+
T Consensus 244 ~ 244 (373)
T d2madh_ 244 A 244 (373)
T ss_pred C
Confidence 4
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.62 E-value=1e-07 Score=79.64 Aligned_cols=115 Identities=11% Similarity=0.038 Sum_probs=87.4
Q ss_pred eEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEE
Q psy13856 68 KAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDV 147 (271)
Q Consensus 68 ~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v 147 (271)
..+.|.++++++.. .|+.+.+||. .+++.... .....+..|...|.++
T Consensus 20 ~~~~W~~d~~~~~~--~~~~~~~~~~---~t~~~~~~---------------------------~~~~~~~~~~~~i~~~ 67 (470)
T d2bgra1 20 YSLRWISDHEYLYK--QENNILVFNA---EYGNSSVF---------------------------LENSTFDEFGHSINDY 67 (470)
T ss_dssp CCCEECSSSEEEEE--SSSCEEEEET---TTCCEEEE---------------------------ECTTTTTTSSSCCCEE
T ss_pred cCCEeCCCCEEEEE--cCCcEEEEEC---CCCCEEEE---------------------------EchhhhhhccCcccee
Confidence 46789999887654 5788989998 44433210 0012335577889999
Q ss_pred EEccCCCCCCcEEEEEeC---------CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEe
Q psy13856 148 AWAPSWGLSKCMIASCSQ---------DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKE 218 (271)
Q Consensus 148 ~~~p~~~~~~~~l~s~~~---------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~ 218 (271)
.|+| |+++|+.++. ++.+.+||+.++. ...+..|...+..+.|+|||+.+|... ++.+++|+.
T Consensus 68 ~~Sp----Dg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~---~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~ 139 (470)
T d2bgra1 68 SISP----DGQFILLEYNYVKQWRHSYTASYDIYDLNKRQ---LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIE 139 (470)
T ss_dssp EECT----TSSEEEEEEEEEECSSSCEEEEEEEEETTTTE---ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESS
T ss_pred EECC----CCCEEEEEECCcceeeeccCceEEEEECCCCc---ccccccCCccccccccccCcceeeEee-cccceEEEC
Confidence 9999 7999988753 5678899999876 556778888999999999999999965 678999998
Q ss_pred CCCC
Q psy13856 219 NTDG 222 (271)
Q Consensus 219 ~~~~ 222 (271)
.++.
T Consensus 140 ~~g~ 143 (470)
T d2bgra1 140 PNLP 143 (470)
T ss_dssp TTSC
T ss_pred CCCc
Confidence 7663
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.49 E-value=6.2e-07 Score=71.32 Aligned_cols=61 Identities=10% Similarity=0.030 Sum_probs=42.3
Q ss_pred EeEEecCCCcceEEEEEccCCCCCCc--EEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecC
Q psy13856 133 EETKLENHSDWVRDVAWAPSWGLSKC--MIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLT 200 (271)
Q Consensus 133 ~~~~~~~h~~~v~~v~~~p~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~ 200 (271)
.+..+. +...+.+++|+| |++ ++++++.|+.|++||.++++. +..+.++......+.+.++
T Consensus 292 ~~~~~~-~~~~~~~~a~sp----DG~~~l~v~~~~d~~i~v~D~~tg~~--~~~i~~~G~~p~~i~~~d~ 354 (355)
T d2bbkh_ 292 RLAKFE-MGHEIDSINVSQ----DEKPLLYALSTGDKTLYIHDAESGEE--LRSVNQLGHGPQVITTADM 354 (355)
T ss_dssp EEEEEE-EEEEECEEEECC----SSSCEEEEEETTTTEEEEEETTTCCE--EEEECCCCSSCCEEECCCC
T ss_pred EEEEec-CCCCEEEEEEcC----CCCeEEEEEECCCCEEEEEECCCCCE--EEEEeCcCCCccEEEeCCC
Confidence 333443 345578999999 676 567778899999999999886 6666666555555554443
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.46 E-value=1.1e-05 Score=62.94 Aligned_cols=178 Identities=8% Similarity=-0.099 Sum_probs=108.8
Q ss_pred CCCCCCEEEEccCCCeEEeccc---eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc--
Q psy13856 31 PLRIGHTLISCDTQAHIGIRST---ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK-- 105 (271)
Q Consensus 31 ~~~~g~~l~s~s~d~~i~lwd~---~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~-- 105 (271)
..+||+++++...+++|..|+. ...+...... +.+++|+++|+++++...++.+..++... ..+......
T Consensus 35 v~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~----~~gla~~~dG~l~v~~~~~~~~~~~~~~~-~~~~~~~~~~~ 109 (302)
T d2p4oa1 35 SAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGK----VSGLAFTSNGDLVATGWNADSIPVVSLVK-SDGTVETLLTL 109 (302)
T ss_dssp ECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSE----EEEEEECTTSCEEEEEECTTSCEEEEEEC-TTSCEEEEEEC
T ss_pred ECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCC----cceEEEcCCCCeEEEecCCceEEEEEecc-cccceeecccc
Confidence 3469999999999999999988 4555555566 89999999999999888888888887632 122221111
Q ss_pred ---ce-eeEEEeeccceee-----eEEE-Ee-eCCceEEeEEec---------CCCcceEEEEEccCCCCCCcEEEEEeC
Q psy13856 106 ---YF-KLTVYSTKLTRIL-----ILVR-IC-GGDKWIEETKLE---------NHSDWVRDVAWAPSWGLSKCMIASCSQ 165 (271)
Q Consensus 106 ---~~-~~~~~~~~~~~l~-----~~v~-i~-~~~~~~~~~~~~---------~h~~~v~~v~~~p~~~~~~~~l~s~~~ 165 (271)
.. .......+++.++ +.+. +. ..+. ..+.... ........+.++. ..++++.+.
T Consensus 110 ~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-----~~l~~~~~~ 183 (302)
T d2p4oa1 110 PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPS-GSIWLEHPMLARSNSESVFPAANGLKRFG-----NFLYVSNTE 183 (302)
T ss_dssp TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTE-EEEEEECGGGSCSSTTCCSCSEEEEEEET-----TEEEEEETT
T ss_pred CCccccceeEEccCCCEEeeccccccceeeeccCCc-ceeEecCCccceeeccCcccccccccccC-----CceeeecCC
Confidence 11 2222333444443 2222 21 1221 1111111 1122345666665 456677778
Q ss_pred CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 166 DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
.+.|..++.....................++++++|+++++...+++|..++..
T Consensus 184 ~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~ 237 (302)
T d2p4oa1 184 KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 237 (302)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred CCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCC
Confidence 899998888764321111222223445679999999988888888998888765
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.37 E-value=8.9e-05 Score=56.15 Aligned_cols=181 Identities=10% Similarity=-0.043 Sum_probs=96.3
Q ss_pred ccCCCCCCCEEEEccCCC---eEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeC-CCcEEEEEeecCCCC
Q psy13856 28 TESPLRIGHTLISCDTQA---HIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSF-HEAAKHLGTVQSSSP 99 (271)
Q Consensus 28 ~~~~~~~g~~l~s~s~d~---~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~-d~~i~~~d~~~~~~~ 99 (271)
....+|||+.||-..... .+.+.+. ...+..+.+. .....|+|+|+.++..+. ++...++.... ...
T Consensus 43 sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~spdg~~i~~~~~~~~~~~~~~~~~-~~~ 117 (269)
T d2hqsa1 43 SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH----NGAPAFSPDGSKLAFALSKTGSLNLYVMDL-ASG 117 (269)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSC----EEEEEECTTSSEEEEEECTTSSCEEEEEET-TTC
T ss_pred eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeeeecc----cccceecCCCCeeeEeeecCCccceeeccc-ccc
Confidence 445567999988654332 3444444 4455566666 788999999998876653 33333333321 222
Q ss_pred ceeecc-c-e--eeEEEeeccceee--------eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCC
Q psy13856 100 ACLQPK-Y-F--KLTVYSTKLTRIL--------ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQD 166 (271)
Q Consensus 100 ~~~~~~-~-~--~~~~~~~~~~~l~--------~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d 166 (271)
...... . . ....+...+.... ..+.+ .... .....+..+........|+| ++..++..+.+
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~sp----dg~~~~~~~~~ 191 (269)
T d2hqsa1 118 QIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNING--GAPQRITWEGSQNQDADVSS----DGKFMVMVSSN 191 (269)
T ss_dssp CEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCCEECCCSSSEEEEEEECT----TSSEEEEEEEC
T ss_pred cceeeeeccccccccccccccccceecccccCCceEeeeeccc--ccceeeeccccccccccccc----ccceeEEEeec
Confidence 222211 1 1 1222223332222 12222 2112 12233344556677889999 67777665554
Q ss_pred -CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEEC---CCcEEEEEeCCC
Q psy13856 167 -RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG---DNSVSLWKENTD 221 (271)
Q Consensus 167 -g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~---D~~v~iw~~~~~ 221 (271)
+...+|....... ......+........|+|||+.|+..+. ...|++++++.+
T Consensus 192 ~~~~~i~~~~~~~~--~~~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~ 248 (269)
T d2hqsa1 192 GGQQHIAKQDLATG--GVQVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 248 (269)
T ss_dssp SSCEEEEEEETTTC--CEEECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CCceeeeEeecccc--cceEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC
Confidence 4444444433322 1223334556677899999998876554 246778887643
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.28 E-value=6.1e-05 Score=60.38 Aligned_cols=181 Identities=8% Similarity=-0.086 Sum_probs=100.3
Q ss_pred ecccCCCCCCCEEEEcc-CCCeEEeccc-----e---eee--ccccccccccceEEEEcCCCCeEEEEe-CCCcEEEEEe
Q psy13856 26 TYTESPLRIGHTLISCD-TQAHIGIRST-----I---SLL--QGSVYLRRESNKAGALSPKLNRSATSS-FHEAAKHLGT 93 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s-~d~~i~lwd~-----~---~~~--~~h~~~~~~~i~~~~~s~~~~~l~s~s-~d~~i~~~d~ 93 (271)
.+.....|||+++++++ ....|.+|+. + ... ...... .+.++|+|+++++.... .+++|.+|+.
T Consensus 147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~g----Pr~i~f~pdg~~~yv~~e~~~~V~v~~~ 222 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDH----PRWVAMHPTGNYLYALMEAGNRICEYVI 222 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCC----EEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred ceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCc----eEEEEECCCCceEEEeccCCCEEEEEEe
Confidence 34556678999776665 3457888765 1 111 112233 68899999999875554 6788989987
Q ss_pred ecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC------CC
Q psy13856 94 VQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ------DR 167 (271)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~------dg 167 (271)
............ .+.+..............+......+.++| |+++++++.. ..
T Consensus 223 ---~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~i~~sp----dG~~lyvsnr~~~~~~~~ 282 (365)
T d1jofa_ 223 ---DPATHMPVYTHH-------------SFPLIPPGIPDRDPETGKGLYRADVCALTF----SGKYMFASSRANKFELQG 282 (365)
T ss_dssp ---CTTTCCEEEEEE-------------EEESSCTTCCCBCTTTSSBSEEEEEEEECT----TSSEEEEEEEESSTTSCC
T ss_pred ---cCCCceEEEEee-------------eeccccccccccccccccccCCccceEECC----CCCEEEEEcccCCCccce
Confidence 322221111000 000000000000001112334566889999 6888877642 23
Q ss_pred eEEEEEcCCCceeeee----eeccCCCCeEEEEEec-CCCEEEEEE-CCCcEEEEEeCCCCceeEEEEec
Q psy13856 168 KVIIWTSNDYVTWTPF----IMNTFDDVVWNVSWSL-TGDILTVSC-GDNSVSLWKENTDGAWQCITEMG 231 (271)
Q Consensus 168 ~i~iwd~~~~~~~~~~----~~~~h~~~v~~v~~~~-~g~~l~s~s-~D~~v~iw~~~~~~~~~~~~~~~ 231 (271)
.|..|+.......... .........+.++++| +|++|+++. .++.|.+|+++.. ....+.+++
T Consensus 283 ~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~-~l~~~~~~~ 351 (365)
T d1jofa_ 283 YIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE-FLHRVARVR 351 (365)
T ss_dssp EEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT-EEEEEEEEE
T ss_pred EEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC-cCcEEEEEE
Confidence 3777777654321111 1112234567799998 799887775 5789999998754 233344443
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.15 E-value=1.8e-05 Score=63.32 Aligned_cols=152 Identities=5% Similarity=-0.095 Sum_probs=85.6
Q ss_pred cccCCCCCCCE---EEEccCCCeEE--eccc-----eeeeccccccccccceEEEEcCCCCeEEEEe----------CCC
Q psy13856 27 YTESPLRIGHT---LISCDTQAHIG--IRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSS----------FHE 86 (271)
Q Consensus 27 ~~~~~~~~g~~---l~s~s~d~~i~--lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s----------~d~ 86 (271)
....|.++++. .+....++..+ +||. +..+..+. ...++|+|||+.|+.++ .|+
T Consensus 23 ~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~------~~~~a~spDg~~i~~~~~~~~~~~~g~~d~ 96 (368)
T d1mdah_ 23 CDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF------LSLAVAGHSGSDFALASTSFARSAKGKRTD 96 (368)
T ss_dssp BCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT------TCEEEECTTSSCEEEEEEEETTTTSSSEEE
T ss_pred cccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC------CCcceECCCCCEEEEEcccCccccccccCC
Confidence 44456677774 33455556545 4566 44444333 23689999999888764 467
Q ss_pred cEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEe-C
Q psy13856 87 AAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCS-Q 165 (271)
Q Consensus 87 ~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~-~ 165 (271)
.|++||. .+++.......+ .. .. .........++|+| ||++++.+. .
T Consensus 97 ~v~v~D~---~t~~~~~~i~~p-------------------~~--~~----~~~g~~p~~~a~Sp----DGk~l~va~~~ 144 (368)
T d1mdah_ 97 YVEVFDP---VTFLPIADIELP-------------------DA--PR----FSVGPRVHIIGNCA----SSACLLFFLFG 144 (368)
T ss_dssp EEEEECT---TTCCEEEEEEET-------------------TS--CS----CCBSCCTTSEEECT----TSSCEEEEECS
T ss_pred eEEEEEC---CCCcEeeeecCC-------------------cc--ce----ecccCCccceEECC----CCCEEEEEeCC
Confidence 7999998 444433311000 00 00 00112234689999 788887765 5
Q ss_pred CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 166 DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
++.+.+||+.+.+. ...+..+..... +......++..+.||++..+++...
T Consensus 145 ~~~v~~~d~~~~~~--~~~~~~~~~~~~---~~~~~~~~v~~~~Dg~~~~~~~~~~ 195 (368)
T d1mdah_ 145 SSAAAGLSVPGASD--DQLTKSASCFHI---HPGAAATHYLGSCPASLAASDLAAA 195 (368)
T ss_dssp SSCEEEEEETTTEE--EEEEECSSCCCC---EEEETTEEECCCCTTSCEEEECCSS
T ss_pred CCeEEEEECCCCcE--eEEeeccCcceE---ccCCCceEEEEcCCCCEEEEEecCC
Confidence 79999999998775 344433332211 1112344555556666666665443
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=98.10 E-value=6.2e-05 Score=61.52 Aligned_cols=142 Identities=4% Similarity=-0.153 Sum_probs=78.7
Q ss_pred eEEEEcCCCCeEEEE-eCCCcEEEEEeecCCCCceeeccc-----ee-eEEEeeccce--ee----eEEEE---------
Q psy13856 68 KAGALSPKLNRSATS-SFHEAAKHLGTVQSSSPACLQPKY-----FK-LTVYSTKLTR--IL----ILVRI--------- 125 (271)
Q Consensus 68 ~~~~~s~~~~~l~s~-s~d~~i~~~d~~~~~~~~~~~~~~-----~~-~~~~~~~~~~--l~----~~v~i--------- 125 (271)
....++|||++|+.. ..+.+|.++|+ .+.++.+... .+ ...++.+++. ++ ..+.+
T Consensus 75 s~t~gtpDGr~lfV~d~~~~rVavIDl---~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~ 151 (441)
T d1qnia2 75 SMTDGRYDGKYLFINDKANTRVARIRL---DIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSL 151 (441)
T ss_dssp EEETTEEEEEEEEEEETTTTEEEEEET---TTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCG
T ss_pred ceecccCCCCEEEEEcCCCCEEEEEEC---CCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccc
Confidence 345567899988555 57888999998 6665554331 12 2344455553 22 11111
Q ss_pred ---------eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCC-----------------------------
Q psy13856 126 ---------CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDR----------------------------- 167 (271)
Q Consensus 126 ---------~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg----------------------------- 167 (271)
.+....+....+.- ......+.++| ++.++++.+.+.
T Consensus 152 ~~~~~~~~~iD~~t~~v~~qI~v-~~~p~~v~~sp----dGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~ 226 (441)
T d1qnia2 152 DNSYTMFTAIDAETMDVAWQVIV-DGNLDNTDADY----TGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAV 226 (441)
T ss_dssp GGEEEEEEEEETTTCSEEEEEEE-SSCCCCEEECS----SSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHH
T ss_pred ccccceEEeecCccceeeEEEec-CCCccceEECC----CCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEe
Confidence 11111122222221 13456788999 688887776542
Q ss_pred ------------eEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEE-EECCCcEEEEEeCC
Q psy13856 168 ------------KVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTV-SCGDNSVSLWKENT 220 (271)
Q Consensus 168 ------------~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s-~s~D~~v~iw~~~~ 220 (271)
.+.+++...... ...+.... ....+.++|||+++++ +..|++|.+||+..
T Consensus 227 ~dGk~~~v~~~~v~vvd~~~~~~v--~~~IPvgk-sPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k 289 (441)
T d1qnia2 227 KAGNFKTIGDSKVPVVDGRGESEF--TRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAIDK 289 (441)
T ss_dssp HTTCCBCCTTCCCCEEECSSSCSS--EEEECCBS-SCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred cCCCEEEeCCCCcEEEEcccCCce--EEEEeCCC-CccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence 223332222221 22333333 3567899999998765 45699999999863
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.06 E-value=0.00031 Score=53.15 Aligned_cols=176 Identities=12% Similarity=0.074 Sum_probs=101.7
Q ss_pred CCCCCCEEEE-ccCCCeEEeccc----eeeec-cccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeec
Q psy13856 31 PLRIGHTLIS-CDTQAHIGIRST----ISLLQ-GSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQP 104 (271)
Q Consensus 31 ~~~~g~~l~s-~s~d~~i~lwd~----~~~~~-~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~ 104 (271)
..++|.++++ .+..+.+..++. ...+. .-... ...++++++++..++....+.+++++. ........
T Consensus 21 vd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----p~gvav~~~g~i~v~d~~~~~i~~~~~---~~~~~~~~ 93 (260)
T d1rwia_ 21 VDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQ----PQGLAVDGAGTVYVTDFNNRVVTLAAG---SNNQTVLP 93 (260)
T ss_dssp ECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCS----CCCEEECTTCCEEEEETTTEEEEECTT---CSCCEECC
T ss_pred EcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccC----ceEEEEcCCCCEEEeeeeeceeeeeee---ccceeeee
Confidence 3458886555 455577777776 11111 11122 578999999988777766666655543 33333322
Q ss_pred c---ceeeEE-Eeeccceee------eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEc
Q psy13856 105 K---YFKLTV-YSTKLTRIL------ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTS 174 (271)
Q Consensus 105 ~---~~~~~~-~~~~~~~l~------~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~ 174 (271)
. ..+..+ ...+++.++ ....+...+......... -.....+++++| +++++++...++.|..++.
T Consensus 94 ~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~i~~~~----~g~~~v~~~~~~~i~~~d~ 168 (260)
T d1rwia_ 94 FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-GLNDPDGVAVDN----SGNVYVTDTDNNRVVKLEA 168 (260)
T ss_dssp CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC-SCCSCCEEEECT----TCCEEEEEGGGTEEEEECT
T ss_pred eeeeeecccccccccceeEeeccccccccccccccceeeeeeec-ccCCcceeeecC----CCCEeeecccccccccccc
Confidence 2 112222 233344443 223332222111111111 223457899999 5788888888899999998
Q ss_pred CCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 175 NDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 175 ~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
..... .......-.....+++.++|.++++....+.|..++...
T Consensus 169 ~~~~~--~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~ 212 (260)
T d1rwia_ 169 ESNNQ--VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 212 (260)
T ss_dssp TTCCE--EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred cccee--eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence 76543 222223445678999999999888887788888887553
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.03 E-value=0.00086 Score=51.17 Aligned_cols=140 Identities=8% Similarity=0.073 Sum_probs=90.6
Q ss_pred CCCCEEEEccCCCeEEeccc----eeee--ccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccc
Q psy13856 33 RIGHTLISCDTQAHIGIRST----ISLL--QGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKY 106 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~----~~~~--~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~ 106 (271)
++|.++++....+.+.+++. +..+ ..+... ...+++.++++.+++....+.|++|+. .++
T Consensus 123 ~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~----~~~i~~d~~g~i~v~d~~~~~V~~~d~----~G~------ 188 (279)
T d1q7fa_ 123 NKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEF----PNGVVVNDKQEIFISDNRAHCVKVFNY----EGQ------ 188 (279)
T ss_dssp TTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSS----EEEEEECSSSEEEEEEGGGTEEEEEET----TCC------
T ss_pred cCCcEEEEeeccceeeEeccCCceeecccccccccc----cceeeeccceeEEeeeccccceeeeec----CCc------
Confidence 46666666666566666666 2222 223333 678888888888888888888888874 222
Q ss_pred eeeEEEeeccceeeeEEEEeeCCceEEeEEe--cCCCcceEEEEEccCCCCCCcEEEEEeC-CCeEEEEEcCCCceeeee
Q psy13856 107 FKLTVYSTKLTRILILVRICGGDKWIEETKL--ENHSDWVRDVAWAPSWGLSKCMIASCSQ-DRKVIIWTSNDYVTWTPF 183 (271)
Q Consensus 107 ~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~ 183 (271)
.+..+ .++.....+|+++| +++++++-.. ++.|.+|+.. ++. ..
T Consensus 189 --------------------------~~~~~g~~g~~~~P~giavD~----~G~i~Vad~~~~~~v~~f~~~-G~~--~~ 235 (279)
T d1q7fa_ 189 --------------------------YLRQIGGEGITNYPIGVGINS----NGEILIADNHNNFNLTIFTQD-GQL--IS 235 (279)
T ss_dssp --------------------------EEEEESCTTTSCSEEEEEECT----TCCEEEEECSSSCEEEEECTT-SCE--EE
T ss_pred --------------------------eeeeecccccccCCccccccc----CCeEEEEECCCCcEEEEECCC-CCE--EE
Confidence 12222 23445567899999 5787776543 5579999853 443 33
Q ss_pred eec--cCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCC
Q psy13856 184 IMN--TFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENT 220 (271)
Q Consensus 184 ~~~--~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~ 220 (271)
.+. ......+.|++.|+|.+++ ++.++.|++|+...
T Consensus 236 ~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~~ 273 (279)
T d1q7fa_ 236 ALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYVQ 273 (279)
T ss_dssp EEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECSC
T ss_pred EEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEeee
Confidence 332 2234578899999997555 56789999999764
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=97.91 E-value=0.00029 Score=57.47 Aligned_cols=72 Identities=11% Similarity=0.039 Sum_probs=50.3
Q ss_pred eEEEEEccCCCCCCcEE-EEEeCCCeEEEEEcCCCcee------eeeeeccC---CCCeEEEEEecCCCEEEEEECCCcE
Q psy13856 144 VRDVAWAPSWGLSKCMI-ASCSQDRKVIIWTSNDYVTW------TPFIMNTF---DDVVWNVSWSLTGDILTVSCGDNSV 213 (271)
Q Consensus 144 v~~v~~~p~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~------~~~~~~~h---~~~v~~v~~~~~g~~l~s~s~D~~v 213 (271)
...+.++| ||+++ +++..++++.+||+++.... ....+.++ .-.....+|.++|..+.+...|.+|
T Consensus 260 PhGv~vSP----DGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v 335 (441)
T d1qnia2 260 PHGLNTSP----DGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQV 335 (441)
T ss_dssp CCCEEECT----TSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEE
T ss_pred ccCceECC----CCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceE
Confidence 46799999 68866 66778999999998753210 00111111 1134556899999888888899999
Q ss_pred EEEEeC
Q psy13856 214 SLWKEN 219 (271)
Q Consensus 214 ~iw~~~ 219 (271)
..|++.
T Consensus 336 ~kw~~~ 341 (441)
T d1qnia2 336 CKWNIA 341 (441)
T ss_dssp EEEEHH
T ss_pred EEeccc
Confidence 999984
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.89 E-value=0.0017 Score=48.84 Aligned_cols=170 Identities=7% Similarity=-0.056 Sum_probs=98.6
Q ss_pred CCCCEEEEccCCCeEEeccc--eeeeccc--cccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCce-eec-c-
Q psy13856 33 RIGHTLISCDTQAHIGIRST--ISLLQGS--VYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPAC-LQP-K- 105 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~--~~~~~~h--~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~-~~~-~- 105 (271)
++|.++++....+.+++++. ....... ... +.++++.+++++.++-..+..+..++. ..... ... .
T Consensus 66 ~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~~~~----p~~iavd~~g~i~v~d~~~~~~~~~~~---~~~~~~~~~~~~ 138 (260)
T d1rwia_ 66 GAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNY----PEGLAVDTQGAVYVADRGNNRVVKLAA---GSKTQTVLPFTG 138 (260)
T ss_dssp TTCCEEEEETTTEEEEECTTCSCCEECCCCSCCS----EEEEEECTTCCEEEEEGGGTEEEEECT---TCSSCEECCCCS
T ss_pred CCCCEEEeeeeeceeeeeeeccceeeeeeeeeee----cccccccccceeEeecccccccccccc---ccceeeeeeecc
Confidence 57888888777777777765 2222111 123 689999999988777666666656654 21111 111 1
Q ss_pred -ceee-EEEeeccceee-----eEEEE-eeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCC
Q psy13856 106 -YFKL-TVYSTKLTRIL-----ILVRI-CGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDY 177 (271)
Q Consensus 106 -~~~~-~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~ 177 (271)
..+. .....+++.++ ..+.. ..++. .........-.....|++++ +++++++....+.|..++....
T Consensus 139 ~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~-~~~~~~~~~~~~p~gi~~d~----~g~l~vsd~~~~~i~~~~~~~~ 213 (260)
T d1rwia_ 139 LNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN-NQVVLPFTDITAPWGIAVDE----AGTVYVTEHNTNQVVKLLAGST 213 (260)
T ss_dssp CCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC-CEEECCCSSCCSEEEEEECT----TCCEEEEETTTTEEEEECTTCS
T ss_pred cCCcceeeecCCCCEeeeccccccccccccccc-eeeeeeccccCCCccceeee----eeeeeeeecCCCEEEEEeCCCC
Confidence 1222 22333455444 33333 32221 11111223445668899999 5888888888888888876554
Q ss_pred ceeeeeee-ccCCCCeEEEEEecCCCEEEEEECCCcEEEEE
Q psy13856 178 VTWTPFIM-NTFDDVVWNVSWSLTGDILTVSCGDNSVSLWK 217 (271)
Q Consensus 178 ~~~~~~~~-~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~ 217 (271)
.. ... ...-.....++++++|.++++-..++.|+.++
T Consensus 214 ~~---~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~ 251 (260)
T d1rwia_ 214 TS---TVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLT 251 (260)
T ss_dssp CC---EECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEEC
T ss_pred eE---EEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEe
Confidence 32 222 22224567899999998877766666665444
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=97.81 E-value=0.00025 Score=55.00 Aligned_cols=113 Identities=8% Similarity=-0.096 Sum_probs=81.9
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEE
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRD 146 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~ 146 (271)
+..++++|||+++++...+++|..++. ++. ...+......+.+
T Consensus 30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p----------------------------------~g~---~~~~~~~~~~~~g 72 (302)
T d2p4oa1 30 LENLASAPDGTIFVTNHEVGEIVSITP----------------------------------DGN---QQIHATVEGKVSG 72 (302)
T ss_dssp EEEEEECTTSCEEEEETTTTEEEEECT----------------------------------TCC---EEEEEECSSEEEE
T ss_pred cCCEEECCCCCEEEEeCCCCEEEEEeC----------------------------------CCC---EEEEEcCCCCcce
Confidence 678999999999999888888866663 121 1122234467889
Q ss_pred EEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeee--ccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeCCC
Q psy13856 147 VAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIM--NTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 147 v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~ 221 (271)
++|+| +++++++...++.+..++....... ...+ .......+.+++.++|+++++.+.++.+..++...+
T Consensus 73 la~~~----dG~l~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~ 144 (302)
T d2p4oa1 73 LAFTS----NGDLVATGWNADSIPVVSLVKSDGT-VETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQP 144 (302)
T ss_dssp EEECT----TSCEEEEEECTTSCEEEEEECTTSC-EEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTT
T ss_pred EEEcC----CCCeEEEecCCceEEEEEecccccc-eeeccccCCccccceeEEccCCCEEeeccccccceeeeccCC
Confidence 99999 6899999888888888877554321 1222 233456889999999999988888888888877654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.64 E-value=0.0004 Score=57.37 Aligned_cols=152 Identities=9% Similarity=-0.001 Sum_probs=87.6
Q ss_pred ecccCCCCCCCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEeC---------CCcEEEEE
Q psy13856 26 TYTESPLRIGHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSSF---------HEAAKHLG 92 (271)
Q Consensus 26 ~~~~~~~~~g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~---------d~~i~~~d 92 (271)
.+.....+++.++. -..||.|.+||. ...+..........+....||||+++++.... .+.+.++|
T Consensus 19 ~~~~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d 97 (465)
T d1xfda1 19 DPEAKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (465)
T ss_dssp CCCCCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred CCCCEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence 33444556776554 455689999998 22222222222234678889999998877643 23444555
Q ss_pred eecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCeEEEE
Q psy13856 93 TVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRKVIIW 172 (271)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iw 172 (271)
+ .+ +....+.........+....|+| ||..+|-.. ++.|.+.
T Consensus 98 ~---~~------------------------------~~~~~l~~~~~~~~~l~~~~wSP----DG~~iafv~-~~nl~~~ 139 (465)
T d1xfda1 98 I---PH------------------------------GDPQSLDPPEVSNAKLQYAGWGP----KGQQLIFIF-ENNIYYC 139 (465)
T ss_dssp S---SS------------------------------CCCEECCCTTCCSCCCSBCCBCS----STTCEEEEE-TTEEEEE
T ss_pred c---cC------------------------------CceeeccCccCCccccceeeecc----CCceEEEEe-cceEEEE
Confidence 4 11 21122222222334566788999 688887765 6678888
Q ss_pred EcCCCceeeeeee-ccCCC-----------------CeEEEEEecCCCEEEEEEC-CCcEEEEEe
Q psy13856 173 TSNDYVTWTPFIM-NTFDD-----------------VVWNVSWSLTGDILTVSCG-DNSVSLWKE 218 (271)
Q Consensus 173 d~~~~~~~~~~~~-~~h~~-----------------~v~~v~~~~~g~~l~s~s~-D~~v~iw~~ 218 (271)
+...+.. .+.. .+-.+ .-..+-|||||++||.... +..|..+.+
T Consensus 140 ~~~~~~~--~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~ 202 (465)
T d1xfda1 140 AHVGKQA--IRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMEL 202 (465)
T ss_dssp SSSSSCC--EEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred ecCCCce--EEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeec
Confidence 7766543 2211 11111 1246779999999998764 455666655
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=97.61 E-value=0.0095 Score=47.10 Aligned_cols=126 Identities=10% Similarity=0.012 Sum_probs=76.1
Q ss_pred ceEEEEcCCCCeEEEEeC-CCcEEEEEeecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceE
Q psy13856 67 NKAGALSPKLNRSATSSF-HEAAKHLGTVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVR 145 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~ 145 (271)
+.+++|+|||++++++.. ...|.+|+.. ..+..... ... ..........
T Consensus 147 ~h~v~~sPdG~~l~v~d~g~d~v~~~~~~--~~g~~~~~---------------------------~~~-~~~~~g~gPr 196 (365)
T d1jofa_ 147 IHGMVFDPTETYLYSADLTANKLWTHRKL--ASGEVELV---------------------------GSV-DAPDPGDHPR 196 (365)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEEC--TTSCEEEE---------------------------EEE-ECSSTTCCEE
T ss_pred ceEEEECCCCCEEEEeeCCCCEEEEEEcc--CCCceeec---------------------------cce-eecCCCCceE
Confidence 578999999998887753 3467777652 11111110 011 1112345678
Q ss_pred EEEEccCCCCCCcEE-EEEeCCCeEEEEEcCCCceeeeeeec-----------------cCCCCeEEEEEecCCCEEEEE
Q psy13856 146 DVAWAPSWGLSKCMI-ASCSQDRKVIIWTSNDYVTWTPFIMN-----------------TFDDVVWNVSWSLTGDILTVS 207 (271)
Q Consensus 146 ~v~~~p~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~-----------------~h~~~v~~v~~~~~g~~l~s~ 207 (271)
.+.|+| +++++ ++.-.+++|.+|+............. .+......+.++|+|++|+++
T Consensus 197 ~i~f~p----dg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs 272 (365)
T d1jofa_ 197 WVAMHP----TGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS 272 (365)
T ss_dssp EEEECT----TSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred EEEECC----CCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence 899999 57766 55556899999998765421111110 112235678999999998877
Q ss_pred EC-CC-----cEEEEEeCCCCceeE
Q psy13856 208 CG-DN-----SVSLWKENTDGAWQC 226 (271)
Q Consensus 208 s~-D~-----~v~iw~~~~~~~~~~ 226 (271)
.. +. .|..|++...+....
T Consensus 273 nr~~~~~~~~~i~~~~~~~~g~~~~ 297 (365)
T d1jofa_ 273 SRANKFELQGYIAGFKLRDCGSIEK 297 (365)
T ss_dssp EEESSTTSCCEEEEEEECTTSCEEE
T ss_pred cccCCCccceEEEEEEecCCCceee
Confidence 43 22 377788776654443
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.56 E-value=0.006 Score=45.65 Aligned_cols=44 Identities=9% Similarity=0.038 Sum_probs=32.9
Q ss_pred CCEEEEccCCCeEEeccc----eeeeccccccccccceEEEEcCCCCeEEEEe
Q psy13856 35 GHTLISCDTQAHIGIRST----ISLLQGSVYLRRESNKAGALSPKLNRSATSS 83 (271)
Q Consensus 35 g~~l~s~s~d~~i~lwd~----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s 83 (271)
|+.+|-.+. +.|.+.|+ ...+..+.+. +...+|||||+.|+-..
T Consensus 12 G~~v~f~~~-~dl~~~d~~~g~~~~Lt~~~~~----~~~p~~SPDG~~iaf~~ 59 (281)
T d1k32a2 12 GDRIIFVCC-DDLWEHDLKSGSTRKIVSNLGV----INNARFFPDGRKIAIRV 59 (281)
T ss_dssp TTEEEEEET-TEEEEEETTTCCEEEEECSSSE----EEEEEECTTSSEEEEEE
T ss_pred CCEEEEEeC-CcEEEEECCCCCEEEEecCCCc----ccCEEECCCCCEEEEEE
Confidence 888776655 66777777 5556666666 78899999999887553
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=97.53 E-value=0.011 Score=45.69 Aligned_cols=74 Identities=5% Similarity=0.063 Sum_probs=54.6
Q ss_pred ceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCE-EEEEECCCcEEEEEeCCC
Q psy13856 143 WVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDI-LTVSCGDNSVSLWKENTD 221 (271)
Q Consensus 143 ~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-l~s~s~D~~v~iw~~~~~ 221 (271)
..-.+++.+ +|++.++....+.|.+||.+.+.. ...+........+++|.|+++. +++.+.++.|.-.++...
T Consensus 227 ~pdGiavD~----~GnlyVa~~~~g~I~~~dp~~g~~--~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 227 GADGMDFDE----DNNLLVANWGSSHIEVFGPDGGQP--KMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEEEEEBT----TCCEEEEEETTTEEEEECTTCBSC--SEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred cceeeEEec----CCcEEEEEcCCCEEEEEeCCCCEE--EEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence 345789988 688888888889999999876653 3344444567889999999874 455566788877776654
Q ss_pred C
Q psy13856 222 G 222 (271)
Q Consensus 222 ~ 222 (271)
+
T Consensus 301 G 301 (314)
T d1pjxa_ 301 G 301 (314)
T ss_dssp B
T ss_pred C
Confidence 4
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.53 E-value=0.011 Score=45.71 Aligned_cols=176 Identities=7% Similarity=-0.063 Sum_probs=100.0
Q ss_pred CCCCEEEEccCCCeEEeccc-----eeeeccccccccccceEEEEcCCCCeEEEEeCC--CcEEEEEeecCCCCceeecc
Q psy13856 33 RIGHTLISCDTQAHIGIRST-----ISLLQGSVYLRRESNKAGALSPKLNRSATSSFH--EAAKHLGTVQSSSPACLQPK 105 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~-----~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d--~~i~~~d~~~~~~~~~~~~~ 105 (271)
++|+++++-...+.|..|+. ...+...... ...++|+++|+++++...+ ....++.... .........
T Consensus 49 ~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~----p~gla~~~dG~l~va~~~~~~~~~~i~~~~~-~~~~~~~~~ 123 (319)
T d2dg1a1 49 RQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKAN----PAAIKIHKDGRLFVCYLGDFKSTGGIFAATE-NGDNLQDII 123 (319)
T ss_dssp TTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSS----EEEEEECTTSCEEEEECTTSSSCCEEEEECT-TSCSCEEEE
T ss_pred CCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCC----eeEEEECCCCCEEEEecCCCccceeEEEEcC-CCceeeeec
Confidence 58888888778888988887 2223333444 6799999999877765432 2233333210 222221111
Q ss_pred -------ceeeEEEeeccceee-----------e-EEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcE-EEEEeC
Q psy13856 106 -------YFKLTVYSTKLTRIL-----------I-LVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCM-IASCSQ 165 (271)
Q Consensus 106 -------~~~~~~~~~~~~~l~-----------~-~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~-l~s~~~ 165 (271)
.........+++..+ + ..++..++ ..+..+...-...+.++|+| +++. .++-+.
T Consensus 124 ~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg--~~~~~~~~~~~~pnGia~s~----dg~~lyvad~~ 197 (319)
T d2dg1a1 124 EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF--RTVTPIIQNISVANGIALST----DEKVLWVTETT 197 (319)
T ss_dssp CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS--CCEEEEEEEESSEEEEEECT----TSSEEEEEEGG
T ss_pred cCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc--ceeEEEeeccceeeeeeecc----ccceEEEeccc
Confidence 112333444454443 2 22222222 11222222223456799999 5664 466667
Q ss_pred CCeEEEEEcCCCcee-ee---e--eeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 166 DRKVIIWTSNDYVTW-TP---F--IMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 166 dg~i~iwd~~~~~~~-~~---~--~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
.+.|..|++...... .. . ...........+++.++|++.++....+.|.+|+.+
T Consensus 198 ~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p~ 257 (319)
T d2dg1a1 198 ANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNKR 257 (319)
T ss_dssp GTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred CCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECCC
Confidence 889999998653210 00 1 111112235679999999988888889999999964
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=97.33 E-value=0.018 Score=43.49 Aligned_cols=175 Identities=10% Similarity=0.016 Sum_probs=101.4
Q ss_pred CCCCCEEEEccCCCeEEeccc----eeeeccc--cccccccceEEEEcCCCC-eEEEE-eCCCcEEEEEeecCCCCceee
Q psy13856 32 LRIGHTLISCDTQAHIGIRST----ISLLQGS--VYLRRESNKAGALSPKLN-RSATS-SFHEAAKHLGTVQSSSPACLQ 103 (271)
Q Consensus 32 ~~~g~~l~s~s~d~~i~lwd~----~~~~~~h--~~~~~~~i~~~~~s~~~~-~l~s~-s~d~~i~~~d~~~~~~~~~~~ 103 (271)
.++|+++++-..++.|++||. +..+... ..........+++.++.. .+++. +.++.|..++ ..+....
T Consensus 31 d~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~----~~g~~~~ 106 (279)
T d1q7fa_ 31 NAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN----QYGQFVR 106 (279)
T ss_dssp CTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC----TTSCEEE
T ss_pred cCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc----cccccee
Confidence 358888888777789999987 2222111 111112245667666544 33332 3444555554 3344333
Q ss_pred cc-----ceee-EEEeeccceee-----eEEEE-eeCCceEEeEEe--cCCCcceEEEEEccCCCCCCcEEEEEeCCCeE
Q psy13856 104 PK-----YFKL-TVYSTKLTRIL-----ILVRI-CGGDKWIEETKL--ENHSDWVRDVAWAPSWGLSKCMIASCSQDRKV 169 (271)
Q Consensus 104 ~~-----~~~~-~~~~~~~~~l~-----~~v~i-~~~~~~~~~~~~--~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~i 169 (271)
.. ..+. ......+..++ ..+.+ ..++ +.+..+ ..+......+++++ ++.++++....+.|
T Consensus 107 ~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g--~~~~~~g~~~~~~~~~~i~~d~----~g~i~v~d~~~~~V 180 (279)
T d1q7fa_ 107 KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG--NVLHKFGCSKHLEFPNGVVVND----KQEIFISDNRAHCV 180 (279)
T ss_dssp EECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS--CEEEEEECTTTCSSEEEEEECS----SSEEEEEEGGGTEE
T ss_pred ecCCCcccccceeccccCCcEEEEeeccceeeEeccCC--ceeecccccccccccceeeecc----ceeEEeeeccccce
Confidence 22 1122 22223344443 33333 4455 334443 34556778899998 58888888889999
Q ss_pred EEEEcCCCceeeeeee--ccCCCCeEEEEEecCCCEEEEEEC-CCcEEEEEeC
Q psy13856 170 IIWTSNDYVTWTPFIM--NTFDDVVWNVSWSLTGDILTVSCG-DNSVSLWKEN 219 (271)
Q Consensus 170 ~iwd~~~~~~~~~~~~--~~h~~~v~~v~~~~~g~~l~s~s~-D~~v~iw~~~ 219 (271)
++||... +. ...+ .+.......+++.++|+++++-.. ++.|.+|+.+
T Consensus 181 ~~~d~~G-~~--~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~~ 230 (279)
T d1q7fa_ 181 KVFNYEG-QY--LRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 230 (279)
T ss_dssp EEEETTC-CE--EEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred eeeecCC-ce--eeeecccccccCCcccccccCCeEEEEECCCCcEEEEECCC
Confidence 9999754 32 3333 234456789999999998777554 4468888843
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.031 Score=41.34 Aligned_cols=154 Identities=12% Similarity=0.060 Sum_probs=79.9
Q ss_pred eeeeccccccccccceEEEEcCCCCeEEEEeCCC-c--EEEEEeecCCCCceeecc----ceeeEEEeeccceee-----
Q psy13856 53 ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHE-A--AKHLGTVQSSSPACLQPK----YFKLTVYSTKLTRIL----- 120 (271)
Q Consensus 53 ~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~-~--i~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~l~----- 120 (271)
...+..+... +.+-+|||||+.||-..... . +.+.+. ..+...... ......++.+++.++
T Consensus 31 ~~~l~~~~~~----~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~~i~~~~~~ 103 (269)
T d2hqsa1 31 QFVVHRSPQP----LMSPAWSPDGSKLAYVTFESGRSALVIQTL---ANGAVRQVASFPRHNGAPAFSPDGSKLAFALSK 103 (269)
T ss_dssp CEEEEEESSC----EEEEEECTTSSEEEEEECTTSSCEEEEEET---TTCCEEEEECCSSCEEEEEECTTSSEEEEEECT
T ss_pred cEEEecCCCc----eeeeEECCCCCEEEEEEeeccCcceeeeec---ccCceeEEeeeecccccceecCCCCeeeEeeec
Confidence 3444445555 77899999999998665433 2 333333 222222221 113445666677665
Q ss_pred ---eEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCCCe--EEEEEcCCCceeeeeeeccCCCCeEEE
Q psy13856 121 ---ILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQDRK--VIIWTSNDYVTWTPFIMNTFDDVVWNV 195 (271)
Q Consensus 121 ---~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~h~~~v~~v 195 (271)
..+....... .................+++. ....+++...++. +.+.+..... ...+..+.......
T Consensus 104 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~~~i~~~~~~~~~---~~~~~~~~~~~~~~ 176 (269)
T d2hqsa1 104 TGSLNLYVMDLAS-GQIRQVTDGRSNNTEPTWFPD---SQNLAFTSDQAGRPQVYKVNINGGA---PQRITWEGSQNQDA 176 (269)
T ss_dssp TSSCEEEEEETTT-CCEEECCCCSSCEEEEEECTT---SSEEEEEECTTSSCEEEEEETTSSC---CEECCCSSSEEEEE
T ss_pred CCccceeeccccc-ccceeeeeccccccccccccc---cccceecccccCCceEeeeeccccc---ceeeeccccccccc
Confidence 1111111110 111222223333445556663 3344555555654 4445554443 33444556677788
Q ss_pred EEecCCCEEEEEEC-CCcEEEEEeCC
Q psy13856 196 SWSLTGDILTVSCG-DNSVSLWKENT 220 (271)
Q Consensus 196 ~~~~~g~~l~s~s~-D~~v~iw~~~~ 220 (271)
.|+|++..++..+. .+...+|....
T Consensus 177 ~~spdg~~~~~~~~~~~~~~i~~~~~ 202 (269)
T d2hqsa1 177 DVSSDGKFMVMVSSNGGQQHIAKQDL 202 (269)
T ss_dssp EECTTSSEEEEEEECSSCEEEEEEET
T ss_pred ccccccceeEEEeecCCceeeeEeec
Confidence 99999998877665 44555555543
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=96.82 E-value=0.065 Score=41.09 Aligned_cols=180 Identities=6% Similarity=-0.011 Sum_probs=97.2
Q ss_pred CCCCCEEEEccC-------CCeEEeccc----eeeecc-----ccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeec
Q psy13856 32 LRIGHTLISCDT-------QAHIGIRST----ISLLQG-----SVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQ 95 (271)
Q Consensus 32 ~~~g~~l~s~s~-------d~~i~lwd~----~~~~~~-----h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~ 95 (271)
.++|+++++... ++.|..||. ...+.. ..+. ...++|.++++.++.+.....+..++.
T Consensus 26 d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~----P~Gl~~~~dg~~l~vad~~~~i~~~~~-- 99 (314)
T d1pjxa_ 26 DKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGI----PAGCQCDRDANQLFVADMRLGLLVVQT-- 99 (314)
T ss_dssp CTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECC----EEEEEECSSSSEEEEEETTTEEEEEET--
T ss_pred eCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCc----ceeEEEeCCCCEEEEEECCCeEEEEeC--
Confidence 368887765433 466877887 111111 1122 467999999998888877666767764
Q ss_pred CCCCcee--ecc-------ceeeEEEeeccceee--------------------eEEEE-eeCCceEEeEEecCCCcceE
Q psy13856 96 SSSPACL--QPK-------YFKLTVYSTKLTRIL--------------------ILVRI-CGGDKWIEETKLENHSDWVR 145 (271)
Q Consensus 96 ~~~~~~~--~~~-------~~~~~~~~~~~~~l~--------------------~~v~i-~~~~~~~~~~~~~~h~~~v~ 145 (271)
...... ... ......+..++...+ +.+.. ..++.... +...-..-+
T Consensus 100 -~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~---~~~~~~~pN 175 (314)
T d1pjxa_ 100 -DGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQ---VDTAFQFPN 175 (314)
T ss_dssp -TSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEE---EEEEESSEE
T ss_pred -CCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeE---eeCCcceee
Confidence 222111 000 012233333333322 22222 22332111 111223346
Q ss_pred EEEEccCCCCCC-cEEEEEeCCCeEEEEEcCCCceeeee-ee---cc-CCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 146 DVAWAPSWGLSK-CMIASCSQDRKVIIWTSNDYVTWTPF-IM---NT-FDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 146 ~v~~~p~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~-~~---~~-h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
.++|+|...... .++++-+..+.|..||+......... .+ .. .......+++..+|++.++....+.|.+|+.+
T Consensus 176 Gi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~ 255 (314)
T d1pjxa_ 176 GIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPD 255 (314)
T ss_dssp EEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTT
T ss_pred eeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCC
Confidence 789988310001 25556677889999987644321111 11 11 22245679999999988888888999999987
Q ss_pred CC
Q psy13856 220 TD 221 (271)
Q Consensus 220 ~~ 221 (271)
.+
T Consensus 256 ~g 257 (314)
T d1pjxa_ 256 GG 257 (314)
T ss_dssp CB
T ss_pred CC
Confidence 54
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=96.26 E-value=0.16 Score=38.87 Aligned_cols=145 Identities=8% Similarity=-0.041 Sum_probs=79.5
Q ss_pred ceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc----cee-eEEEeeccceee----------eEEEEeeCCce
Q psy13856 67 NKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK----YFK-LTVYSTKLTRIL----------ILVRICGGDKW 131 (271)
Q Consensus 67 i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~----~~~-~~~~~~~~~~l~----------~~v~i~~~~~~ 131 (271)
+-.++|.++|++.++-...+.|..|+. ..+...... ..+ ...+..+++.++ ..+.+.....
T Consensus 42 lEG~~~D~~G~Ly~~D~~~g~I~ri~p---~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~- 117 (319)
T d2dg1a1 42 LEGLNFDRQGQLFLLDVFEGNIFKINP---ETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD- 117 (319)
T ss_dssp EEEEEECTTSCEEEEETTTCEEEEECT---TTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC-
T ss_pred cEeCEECCCCCEEEEECCCCEEEEEEC---CCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCc-
Confidence 457899999987777778888877775 333333221 112 223344555544 1222221110
Q ss_pred EEeEEec--CCCcceEEEEEccCCCCCCcEEEEEeC------CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCE
Q psy13856 132 IEETKLE--NHSDWVRDVAWAPSWGLSKCMIASCSQ------DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDI 203 (271)
Q Consensus 132 ~~~~~~~--~h~~~v~~v~~~p~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~ 203 (271)
....... .-......+.+.| +|++.++... .+.+..++..... ...+...-...+.++|+|+++.
T Consensus 118 ~~~~~~~~~~~~~~~nd~~~d~----~G~l~vtd~~~~~~~~~g~v~~~~~dg~~---~~~~~~~~~~pnGia~s~dg~~ 190 (319)
T d2dg1a1 118 NLQDIIEDLSTAYCIDDMVFDS----KGGFYFTDFRGYSTNPLGGVYYVSPDFRT---VTPIIQNISVANGIALSTDEKV 190 (319)
T ss_dssp SCEEEECSSSSCCCEEEEEECT----TSCEEEEECCCBTTBCCEEEEEECTTSCC---EEEEEEEESSEEEEEECTTSSE
T ss_pred eeeeeccCCCcccCCcceeEEe----ccceeecccccccccCcceeEEEecccce---eEEEeeccceeeeeeeccccce
Confidence 1111111 1123467889999 5887766432 1234444443322 2222222335678999999986
Q ss_pred EEEE-ECCCcEEEEEeCCCC
Q psy13856 204 LTVS-CGDNSVSLWKENTDG 222 (271)
Q Consensus 204 l~s~-s~D~~v~iw~~~~~~ 222 (271)
|..+ +..+.|..|+++..+
T Consensus 191 lyvad~~~~~I~~~d~~~~g 210 (319)
T d2dg1a1 191 LWVTETTANRLHRIALEDDG 210 (319)
T ss_dssp EEEEEGGGTEEEEEEECTTS
T ss_pred EEEecccCCceEEEEEcCCC
Confidence 6544 557899999987554
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.12 E-value=0.036 Score=45.26 Aligned_cols=74 Identities=7% Similarity=-0.043 Sum_probs=52.2
Q ss_pred ceEEEEEccCCCCCCcEEEEEe---------CCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECCCcE
Q psy13856 143 WVRDVAWAPSWGLSKCMIASCS---------QDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSV 213 (271)
Q Consensus 143 ~v~~v~~~p~~~~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v 213 (271)
.+....|+| |+++++... ..+.+.++|+.++....+.........+....|+|||+.+|-.. ++.|
T Consensus 62 ~~~~~~~Sp----D~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl 136 (465)
T d1xfda1 62 RAIRYEISP----DREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNI 136 (465)
T ss_dssp TCSEEEECT----TSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEE
T ss_pred ccceeEECC----CCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceE
Confidence 566788999 788877653 35778999998877422222223344566688999999998876 6678
Q ss_pred EEEEeCCC
Q psy13856 214 SLWKENTD 221 (271)
Q Consensus 214 ~iw~~~~~ 221 (271)
.+.+...+
T Consensus 137 ~~~~~~~~ 144 (465)
T d1xfda1 137 YYCAHVGK 144 (465)
T ss_dssp EEESSSSS
T ss_pred EEEecCCC
Confidence 88877654
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=94.60 E-value=0.082 Score=39.00 Aligned_cols=61 Identities=7% Similarity=-0.036 Sum_probs=43.0
Q ss_pred CcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEEC-CC-----cEEEEEeCCC
Q psy13856 157 KCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG-DN-----SVSLWKENTD 221 (271)
Q Consensus 157 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-D~-----~v~iw~~~~~ 221 (271)
|+.++-.+ ++.|.+.|+..++ ...+..+.+......|+|||+.||..+. ++ .|.+++...+
T Consensus 12 G~~v~f~~-~~dl~~~d~~~g~---~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g 78 (281)
T d1k32a2 12 GDRIIFVC-CDDLWEHDLKSGS---TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENG 78 (281)
T ss_dssp TTEEEEEE-TTEEEEEETTTCC---EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTT
T ss_pred CCEEEEEe-CCcEEEEECCCCC---EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCC
Confidence 77777655 5678888998877 4556667778889999999999886543 22 3555555433
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=92.97 E-value=1.4 Score=33.79 Aligned_cols=80 Identities=9% Similarity=0.133 Sum_probs=52.6
Q ss_pred eEEEEEccCCCCCCcEEEEEeCC-CeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEECC------CcEEEE
Q psy13856 144 VRDVAWAPSWGLSKCMIASCSQD-RKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCGD------NSVSLW 216 (271)
Q Consensus 144 v~~v~~~p~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D------~~v~iw 216 (271)
..+..+.+ ++.+++.|+.+ ..+.+||..+..-.....+.. ...-..++..+||++++.++.+ ..+.+|
T Consensus 78 ~~~~~~~~----~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~y 152 (387)
T d1k3ia3 78 CPGISMDG----NGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVY 152 (387)
T ss_dssp SCEEEECT----TSCEEEECSSSTTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEE
T ss_pred eeEEEEec----CCcEEEeecCCCcceeEecCccCcccccccccc-cccccceeeecCCceeeeccccccccccceeeee
Confidence 34566777 68898888765 589999998755311111211 1223456677899999988753 368999
Q ss_pred EeCCCCceeEEEE
Q psy13856 217 KENTDGAWQCITE 229 (271)
Q Consensus 217 ~~~~~~~~~~~~~ 229 (271)
|+.+ ..|..+..
T Consensus 153 d~~~-~~W~~~~~ 164 (387)
T d1k3ia3 153 SPSS-KTWTSLPN 164 (387)
T ss_dssp ETTT-TEEEEETT
T ss_pred cCCC-CceeecCC
Confidence 9875 47766543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=92.57 E-value=1.5 Score=32.75 Aligned_cols=170 Identities=6% Similarity=-0.086 Sum_probs=96.1
Q ss_pred CCCEEEEccCCCeEEeccc---eeeeccccccccccceEEEEcCCCCeEEEEeCCCcEEEEEeecCCCCceeecc-----
Q psy13856 34 IGHTLISCDTQAHIGIRST---ISLLQGSVYLRRESNKAGALSPKLNRSATSSFHEAAKHLGTVQSSSPACLQPK----- 105 (271)
Q Consensus 34 ~g~~l~s~s~d~~i~lwd~---~~~~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d~~i~~~d~~~~~~~~~~~~~----- 105 (271)
++.++.+=-..+.|..||. .......... +.++++.+++.++++ +.++ +..+|. .+++.....
T Consensus 29 ~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~----~~~i~~~~dg~l~va-~~~g-l~~~d~---~tg~~~~l~~~~~~ 99 (295)
T d2ghsa1 29 SGTAWWFNILERELHELHLASGRKTVHALPFM----GSALAKISDSKQLIA-SDDG-LFLRDT---ATGVLTLHAELESD 99 (295)
T ss_dssp TTEEEEEEGGGTEEEEEETTTTEEEEEECSSC----EEEEEEEETTEEEEE-ETTE-EEEEET---TTCCEEEEECSSTT
T ss_pred CCEEEEEECCCCEEEEEECCCCeEEEEECCCC----cEEEEEecCCCEEEE-EeCc-cEEeec---ccceeeEEeeeecC
Confidence 5555555445577888876 2222222334 778999988876655 4554 558886 444432211
Q ss_pred ----ceeeEEEeeccceeee-----------EEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCc-EEEEEeCCCeE
Q psy13856 106 ----YFKLTVYSTKLTRILI-----------LVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKC-MIASCSQDRKV 169 (271)
Q Consensus 106 ----~~~~~~~~~~~~~l~~-----------~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~-~l~s~~~dg~i 169 (271)
..........+...++ .+.-...+ +....+. .-..-..+.|+| ++. ++++-+..+.|
T Consensus 100 ~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g--~~~~~~~-~~~~~Ng~~~s~----d~~~l~~~dt~~~~I 172 (295)
T d2ghsa1 100 LPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKG--KVTKLFA-DISIPNSICFSP----DGTTGYFVDTKVNRL 172 (295)
T ss_dssp CTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETT--EEEEEEE-EESSEEEEEECT----TSCEEEEEETTTCEE
T ss_pred CCcccceeeEECCCCCEEEEeccccccccceeEeeecCC--cEEEEee-ccCCcceeeecC----CCceEEEeeccccee
Confidence 1122333334544431 11112333 2222222 223456899999 455 55666778889
Q ss_pred EEEEcCCCce------eeeeeeccCCCCeEEEEEecCCCEEEEEECCCcEEEEEeC
Q psy13856 170 IIWTSNDYVT------WTPFIMNTFDDVVWNVSWSLTGDILTVSCGDNSVSLWKEN 219 (271)
Q Consensus 170 ~iwd~~~~~~------~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~v~iw~~~ 219 (271)
..+++..... .......+..+....+++..+|++.++.-..+.|..|+.+
T Consensus 173 ~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp~ 228 (295)
T d2ghsa1 173 MRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 228 (295)
T ss_dssp EEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred eEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecCC
Confidence 9998754221 0011122334567889999999988877778889999964
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=92.32 E-value=1.8 Score=33.16 Aligned_cols=152 Identities=7% Similarity=0.037 Sum_probs=83.6
Q ss_pred CCCCEEEEccCCC-----------eEEeccc-eee-------eccccccccccceEEEEcCCCCeEEEEeCC-CcEEEEE
Q psy13856 33 RIGHTLISCDTQA-----------HIGIRST-ISL-------LQGSVYLRRESNKAGALSPKLNRSATSSFH-EAAKHLG 92 (271)
Q Consensus 33 ~~g~~l~s~s~d~-----------~i~lwd~-~~~-------~~~h~~~~~~~i~~~~~s~~~~~l~s~s~d-~~i~~~d 92 (271)
.+|++++.|+.+. .+.+||. ... ...|... ..+.++.+++++++.|+.+ ..+.+||
T Consensus 29 ~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~----~~~~~~~~~g~i~v~Gg~~~~~~~~yd 104 (387)
T d1k3ia3 29 TSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF----CPGISMDGNGQIVVTGGNDAKKTSLYD 104 (387)
T ss_dssp TTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS----SCEEEECTTSCEEEECSSSTTCEEEEE
T ss_pred eCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccc----eeEEEEecCCcEEEeecCCCcceeEec
Confidence 4788888777421 3678888 111 1222223 4467888999998888765 5788888
Q ss_pred eecCCCCceeeccceeeEEEeeccceeeeEEEEeeCCceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeCC------
Q psy13856 93 TVQSSSPACLQPKYFKLTVYSTKLTRILILVRICGGDKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQD------ 166 (271)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v~i~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~d------ 166 (271)
. ....|.....+..... -...+..+ |+.+++.|+.+
T Consensus 105 ~---------------------------------~~~~w~~~~~~~~~r~-~~~~~~~~----dG~v~v~GG~~~~~~~~ 146 (387)
T d1k3ia3 105 S---------------------------------SSDSWIPGPDMQVARG-YQSSATMS----DGRVFTIGGSWSGGVFE 146 (387)
T ss_dssp G---------------------------------GGTEEEECCCCSSCCS-SCEEEECT----TSCEEEECCCCCSSSCC
T ss_pred C---------------------------------ccCccccccccccccc-ccceeeec----CCceeeecccccccccc
Confidence 6 2233333322222222 23455556 58888888753
Q ss_pred CeEEEEEcCCCceeeee-ee-------ccCCC-----CeEEEEEecCCCEEEEEECCCcEEEEEeCCCCceeEEE
Q psy13856 167 RKVIIWTSNDYVTWTPF-IM-------NTFDD-----VVWNVSWSLTGDILTVSCGDNSVSLWKENTDGAWQCIT 228 (271)
Q Consensus 167 g~i~iwd~~~~~~~~~~-~~-------~~h~~-----~v~~v~~~~~g~~l~s~s~D~~v~iw~~~~~~~~~~~~ 228 (271)
..+.+||..+.. |... .. ..+.. .-..+..-++|..+..+..++.+.+++.... .|....
T Consensus 147 ~~v~~yd~~~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~-~~~~~~ 219 (387)
T d1k3ia3 147 KNGEVYSPSSKT-WTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG-DVKSAG 219 (387)
T ss_dssp CCEEEEETTTTE-EEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC-EEEEEE
T ss_pred ceeeeecCCCCc-eeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccC-cEeecc
Confidence 358899988754 2110 00 00100 0111223456777777777777777776543 454443
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=91.58 E-value=1.9 Score=32.03 Aligned_cols=163 Identities=9% Similarity=-0.080 Sum_probs=87.3
Q ss_pred CCCCEEEEccCCCeEEeccc----eeeeccc-cccccccceEEEEcCCCCeEEEEeC----CCcEEEEEeecCCCCceee
Q psy13856 33 RIGHTLISCDTQAHIGIRST----ISLLQGS-VYLRRESNKAGALSPKLNRSATSSF----HEAAKHLGTVQSSSPACLQ 103 (271)
Q Consensus 33 ~~g~~l~s~s~d~~i~lwd~----~~~~~~h-~~~~~~~i~~~~~s~~~~~l~s~s~----d~~i~~~d~~~~~~~~~~~ 103 (271)
++|.++++ +. ..+.++|. +..+... .......+.++.+.|+|++.++... .+.-.+|.. ..++...
T Consensus 68 ~dg~l~va-~~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~---~~g~~~~ 142 (295)
T d2ghsa1 68 SDSKQLIA-SD-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV---AKGKVTK 142 (295)
T ss_dssp ETTEEEEE-ET-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE---ETTEEEE
T ss_pred cCCCEEEE-Ee-CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee---cCCcEEE
Confidence 56666655 44 35777776 2222211 1111122678999999986665432 223345655 2233322
Q ss_pred cc---ce-eeEEEeeccceee------eEEEE-e--eC-----CceEEeEEecCCCcceEEEEEccCCCCCCcEEEEEeC
Q psy13856 104 PK---YF-KLTVYSTKLTRIL------ILVRI-C--GG-----DKWIEETKLENHSDWVRDVAWAPSWGLSKCMIASCSQ 165 (271)
Q Consensus 104 ~~---~~-~~~~~~~~~~~l~------~~v~i-~--~~-----~~~~~~~~~~~h~~~v~~v~~~p~~~~~~~~l~s~~~ 165 (271)
.. .. ....++.+++.+. +.|.. . .. +.......+.+.......++++. +|++.++.-.
T Consensus 143 ~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~----~GnlWva~~~ 218 (295)
T d2ghsa1 143 LFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDA----EGHIWNARWG 218 (295)
T ss_dssp EEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECT----TSCEEEEEET
T ss_pred EeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcC----CCCEEeeeeC
Confidence 22 22 3344455554433 34433 1 11 11122223334445667888888 6888888877
Q ss_pred CCeEEEEEcCCCceeeeeeeccCCCCeEEEEEe-cCCCEEEEE
Q psy13856 166 DRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWS-LTGDILTVS 207 (271)
Q Consensus 166 dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~-~~g~~l~s~ 207 (271)
.+.|..||.. ++. ...+.--...+++++|- ++.+.|+..
T Consensus 219 ~g~V~~~dp~-G~~--~~~i~lP~~~~T~~~FGG~d~~~LyvT 258 (295)
T d2ghsa1 219 EGAVDRYDTD-GNH--IARYEVPGKQTTCPAFIGPDASRLLVT 258 (295)
T ss_dssp TTEEEEECTT-CCE--EEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred CCceEEecCC-CcE--eeEecCCCCceEEEEEeCCCCCEEEEE
Confidence 8899999964 454 34443333568999996 666555443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.33 E-value=3.5 Score=30.04 Aligned_cols=74 Identities=7% Similarity=-0.102 Sum_probs=44.3
Q ss_pred cceEEEEEccCCCCCCcEEEEEeCCCeEEEEEcCCCceeeeeeeccCCCCeEEEEEecCCCEEEEEEC-CCcEEEEEeCC
Q psy13856 142 DWVRDVAWAPSWGLSKCMIASCSQDRKVIIWTSNDYVTWTPFIMNTFDDVVWNVSWSLTGDILTVSCG-DNSVSLWKENT 220 (271)
Q Consensus 142 ~~v~~v~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~-D~~v~iw~~~~ 220 (271)
..+.+++++.. .+.+..+-...+.|.+.++..... .............++++|...++.-... .+..+|+....
T Consensus 79 ~~p~~iAvD~~---~~~lY~~d~~~~~I~~~~~dg~~~--~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~ 153 (263)
T d1npea_ 79 GSPEGIALDHL---GRTIFWTDSQLDRIEVAKMDGTQR--RVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHM 153 (263)
T ss_dssp CCEEEEEEETT---TTEEEEEETTTTEEEEEETTSCSC--EEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred ccccEEEEecc---CCeEEEeccCCCEEEEEecCCceE--EEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecC
Confidence 45677888764 344555556677888888876543 2223333356788888887666654433 23445665443
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=81.33 E-value=11 Score=29.73 Aligned_cols=64 Identities=9% Similarity=0.022 Sum_probs=38.6
Q ss_pred CeEEEEEecCCCEEEEEEC-CCcEEEEEeCCCCceeEEEEecccchhhhhhhhhccccccccceeeecccCc
Q psy13856 191 VVWNVSWSLTGDILTVSCG-DNSVSLWKENTDGAWQCITEMGKTSEQRAIKKELNQSLDKWTPIHSVISTNK 261 (271)
Q Consensus 191 ~v~~v~~~~~g~~l~s~s~-D~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (271)
....+..+|||+++++++. +.++.++|++.-..+ +... .........+....-.|||.......
T Consensus 276 sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~-----~~~~--~~~~~~~~~e~elglgPLht~fd~~g 340 (459)
T d1fwxa2 276 NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAV-----FYEN--ADPRSAVVAEPELGLGPLHTAFDGRG 340 (459)
T ss_dssp SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHH-----HHSC--C-GGGGEEECCBCCSCEEEEEECTTS
T ss_pred CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhh-----hccc--CCccccEEeecccCcCccccccCCCc
Confidence 3557889999999888776 899999998632111 1110 01122233444566678877665544
|