Psyllid ID: psy13875

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MKFVDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQFVDKHGEGSKRVPSGP
Secondary Structure (PSIPRED)
cccccHHHHHHHHcccccccccccccccccccccccHHHHHccccccccEEEEEEEEEcccccEEEEEEccccccccHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEEEEEEEEcccccHcccccccccEEEccccHHHHHcccEEccccEEcEEEEEEccccEEEEEEEEcccEcccHHHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mkfvdegdEVWLEdvkqgdgglgdlkyplLADFKKEIATSYGVliesagiplrglfiidtkgvlrqitvndlpvgrSVEEVLRLVKAFQFvdkhgegskrvpsgp
Flexible Loop (DISEMBL)
mkfvdegdevwledvkqgdgglgdLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVndlpvgrsVEEVLRLVKAFqfvdkhgegskrvpsgp
Low Complexity Region (SEG)
MKFVDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQFVDKHGEGSKRVPSGP
Disordered region (IsUnstruct)
********EVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQFVD*************
Disordered Region (DISOPRED)
*KFVDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQFVDKHGEGSKRVPSG*
Disordered Region (DISEMBL)
MKFVDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQFVD*************
Disordered Region (DISPRO)
MKFVDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQFVDKHG*GSKRV****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKFVDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQFVDKHGEGSKRVPSGP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
P0CB50	199	Peroxiredoxin-1 OS=Gallus	yes	N/A	0.819	0.432	0.655	1e-25
P20108	257	Thioredoxin-dependent per	yes	N/A	0.809	0.330	0.627	3e-25
Q9Z0V6	257	Thioredoxin-dependent per	yes	N/A	0.809	0.330	0.627	3e-25
Q8T6C4	193	Thioredoxin peroxidase OS	N/A	N/A	0.8	0.435	0.642	4e-25
Q9NL98	195	Peroxiredoxin OS=Ascaris	N/A	N/A	0.819	0.441	0.632	6e-25
Q63716	199	Peroxiredoxin-1 OS=Rattus	no	N/A	0.819	0.432	0.632	7e-25
Q9JKY1	199	Peroxiredoxin-1 OS=Cricet	no	N/A	0.819	0.432	0.632	8e-25
Q6B4U9	199	Peroxiredoxin-1 OS=Myotis	N/A	N/A	0.819	0.432	0.643	9e-25
Q9Y7F0	196	Peroxiredoxin TSA1 OS=Can	N/A	N/A	0.866	0.464	0.569	1e-24
Q6DV14	199	Peroxiredoxin-1 OS=Gecko	N/A	N/A	0.819	0.432	0.632	1e-24

>sp|P0CB50|PRDX1_CHICK Peroxiredoxin-1 OS=Gallus gallus GN=PRDX1 PE=1 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 57/87 (65%), Positives = 67/87 (77%), Gaps = 1/87 (1%)

Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   K+  GGLG +K PL++D K+ IA  YGVL E  GI  RGLFIID KG+LRQIT+
Sbjct: 86  AWINTPKK-QGGLGTMKIPLVSDTKRVIAKDYGVLKEDEGIAYRGLFIIDEKGILRQITI 144

Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E LRLV+AFQF DKHGE
Sbjct: 145 NDLPVGRSVDETLRLVQAFQFTDKHGE 171

Involved in redox regulation of the cell (By similarity). Reduces peroxides with reducing equivalents provided through the thioredoxin system but not from glutaredoxin (By similarity). May play an important role in eliminating peroxides generated during metabolism (By similarity). Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2) (By similarity). Reduces an intramolecular disulfide bond in GDPD5 that gates the ability to GDPD5 to drive postmitotic motor neuron differentiation.
Gallus gallus (taxid: 9031)
EC: 1EC: .EC: 1EC: 1EC: .EC: 1EC: .EC: 1EC: 5

>sp|P20108|PRDX3_MOUSE Thioredoxin-dependent peroxide reductase, mitochondrial OS=Mus musculus GN=Prdx3 PE=1 SV=1

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 68/86 (79%), Gaps = 1/86 (1%)

Query: 11  WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
           W+ +  + +GGLG +   LL+D  K+I+  YGVL+ESAGI LRGLFIID  GV++ ++VN
Sbjct: 144 WI-NTPRKNGGLGHMNITLLSDITKQISRDYGVLLESAGIALRGLFIIDPNGVVKHLSVN 202

Query: 71  DLPVGRSVEEVLRLVKAFQFVDKHGE 96
           DLPVGRSVEE LRLVKAFQFV+ HGE
Sbjct: 203 DLPVGRSVEETLRLVKAFQFVETHGE 228

Involved in redox regulation of the cell. Protects radical-sensitive enzymes from oxidative damage by a radical-generating system.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9Z0V6|PRDX3_RAT Thioredoxin-dependent peroxide reductase, mitochondrial OS=Rattus norvegicus GN=Prdx3 PE=1 SV=2

 Score =  113 bits (283), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 54/86 (62%), Positives = 68/86 (79%), Gaps = 1/86 (1%)

Query: 11  WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
           W+ +  + +GGLG +   LL+D  K+I+  YGVL+ESAGI LRGLFIID  GV++ ++VN
Sbjct: 144 WI-NTPRKNGGLGHMNITLLSDLTKQISRDYGVLLESAGIALRGLFIIDPNGVIKHLSVN 202

Query: 71  DLPVGRSVEEVLRLVKAFQFVDKHGE 96
           DLPVGRSVEE LRLVKAFQFV+ HGE
Sbjct: 203 DLPVGRSVEEPLRLVKAFQFVETHGE 228

Involved in redox regulation of the cell. Protects radical-sensitive enzymes from oxidative damage by a radical-generating system. Acts synergistically with MAP3K13 to regulate the activation of NF-kappa-B in the cytosol.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q8T6C4|TDX_ECHGR Thioredoxin peroxidase OS=Echinococcus granulosus GN=TPX PE=2 SV=1

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/84 (64%), Positives = 66/84 (78%)

Query: 13  EDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDL 72
            +V + +GG+  ++ P+LAD   +I+  YGVLIE  GI LRGLFIID KGVLRQIT+NDL
Sbjct: 84  NNVSRKEGGVQGMRIPMLADTNHKISRDYGVLIEDQGIALRGLFIIDDKGVLRQITINDL 143

Query: 73  PVGRSVEEVLRLVKAFQFVDKHGE 96
           PVGRSV+E LRL+ AFQF DKHGE
Sbjct: 144 PVGRSVDEALRLLDAFQFTDKHGE 167

Reduces peroxides with reducing equivalents provided through the thioredoxin system. It is not able to receive electrons from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2).

Echinococcus granulosus (taxid: 6210)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9NL98|PRDX_ASCSU Peroxiredoxin OS=Ascaris suum PE=2 SV=1

 Score =  112 bits (280), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 67/87 (77%), Gaps = 1/87 (1%)

Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   ++  GGLG++K P+++D   +I+  YGVL E  GI  RGLFIID KG+LRQITV
Sbjct: 83  AWINTPRK-QGGLGEMKIPIISDNNHQISRDYGVLKEDDGIAYRGLFIIDPKGILRQITV 141

Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV E LRLV+AFQFVDKHGE
Sbjct: 142 NDLPVGRSVTETLRLVQAFQFVDKHGE 168

Antioxidant. Reduces peroxides with reducing equivalent provided through the thioredoxin system but not from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism.

Ascaris suum (taxid: 6253)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q63716|PRDX1_RAT Peroxiredoxin-1 OS=Rattus norvegicus GN=Prdx1 PE=1 SV=1

 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 66/87 (75%), Gaps = 1/87 (1%)

Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   K+  GGLG +  PL++D K+ IA  YGVL    GI  RGLFIID KG+LRQIT+
Sbjct: 86  AWINTPKK-QGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITI 144

Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E+LRLV+AFQF DKHGE
Sbjct: 145 NDLPVGRSVDEILRLVQAFQFTDKHGE 171

Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system but not from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2). Reduces an intramolecular disulfide bond in GDPD5 that gates the ability to GDPD5 to drive postmitotic motor neuron differentiation.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9JKY1|PRDX1_CRIGR Peroxiredoxin-1 OS=Cricetulus griseus GN=PRDX1 PE=1 SV=1

 Score =  112 bits (279), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 66/87 (75%), Gaps = 1/87 (1%)

Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   K+  GGLG +  PL++D K+ IA  YGVL    GI  RGLFIID KG+LRQIT+
Sbjct: 86  AWINTPKK-QGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITI 144

Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E+LRLV+AFQF DKHGE
Sbjct: 145 NDLPVGRSVDEILRLVQAFQFTDKHGE 171

Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system but not from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2) (By similarity). Reduces an intramolecular disulfide bond in GDPD5 that gates the ability to GDPD5 to drive postmitotic motor neuron differentiation.

Cricetulus griseus (taxid: 10029)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q6B4U9|PRDX1_MYOLU Peroxiredoxin-1 OS=Myotis lucifugus GN=PRDX1 PE=1 SV=1

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 56/87 (64%), Positives = 65/87 (74%), Gaps = 1/87 (1%)

Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   K+  GGLG +  PL++D K+ IA  YGVL    GI  RGLFIID KG+LRQITV
Sbjct: 86  AWINTPKK-QGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITV 144

Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E LRLV+AFQF DKHGE
Sbjct: 145 NDLPVGRSVDETLRLVQAFQFTDKHGE 171

Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system but not from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2) (By similarity). Reduces an intramolecular disulfide bond in GDPD5 that gates the ability to GDPD5 to drive postmitotic motor neuron differentiation.

Myotis lucifugus (taxid: 59463)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q9Y7F0|TSA1_CANAL Peroxiredoxin TSA1 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=TSA1 PE=2 SV=1

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/93 (56%), Positives = 71/93 (76%), Gaps = 2/93 (2%)

Query: 6   EGDEVWL--EDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGV 63
           + +  WL   +V + DGG+G + +P+LAD    ++  YGVLIE  G+ LRG+F+ID KGV
Sbjct: 75  DSEYTWLAWTNVARKDGGIGKVDFPVLADTNHSLSRDYGVLIEEEGVALRGIFLIDPKGV 134

Query: 64  LRQITVNDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           LRQIT+NDLPVGRSVEE LRL++AFQF +K+GE
Sbjct: 135 LRQITINDLPVGRSVEESLRLLEAFQFTEKYGE 167

Physiologically important antioxidant which constitutes an enzymatic defense against sulfur-containing radicals. Can provide protection against a thiol-containing oxidation system but not against an oxidation system without thiol.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

>sp|Q6DV14|PRDX1_GECJA Peroxiredoxin-1 OS=Gecko japonicus GN=PRDX1 PE=2 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 65/87 (74%), Gaps = 1/87 (1%)

Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   K+  GGLG +  PL++D K+ IA  YG+L E  GI  RGLFIID KG LRQIT+
Sbjct: 86  AWINTPKK-QGGLGSMHIPLVSDTKRVIAKDYGILKEDEGISYRGLFIIDDKGTLRQITI 144

Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E LRLV+AFQF DKHGE
Sbjct: 145 NDLPVGRSVDETLRLVQAFQFTDKHGE 171

Involved in redox regulation of the cell. Reduces peroxides with reducing equivalents provided through the thioredoxin system but not from glutaredoxin. May play an important role in eliminating peroxides generated during metabolism. Might participate in the signaling cascades of growth factors and tumor necrosis factor-alpha by regulating the intracellular concentrations of H(2)O(2) (By similarity). Reduces an intramolecular disulfide bond in GDPD5 that gates the ability to GDPD5 to drive postmitotic motor neuron differentiation.

Gecko japonicus (taxid: 146911)

EC: 1

EC: .

EC: 1

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
242018701	226	Peroxiredoxin-1, putative [Pediculus hum	0.819	0.380	0.724	5e-29
193627312	239	PREDICTED: thioredoxin-dependent peroxid	0.790	0.347	0.734	6e-28
321452529	230	hypothetical protein DAPPUDRAFT_305931 [	0.819	0.373	0.689	3e-27
345324856	222	PREDICTED: peroxiredoxin-2-like [Ornitho	0.885	0.418	0.625	2e-26
384497087	154	peroxiredoxin-1 [Rhizopus delemar RA 99-	0.819	0.558	0.701	2e-26
170048401	232	peroxiredoxin-2 [Culex quinquefasciatus]	0.819	0.370	0.666	2e-26
384485578	154	peroxiredoxin-1 [Rhizopus delemar RA 99-	0.819	0.558	0.689	2e-26
67083703	233	mitochondrial truncated thioredoxin-depe	0.790	0.356	0.710	3e-26
67083335	233	thioredoxin-dependent peroxide reductase	0.790	0.356	0.710	3e-26
442749885	233	Putative alkyl hydroperoxide reductase t	0.790	0.356	0.710	3e-26

>gi|242018701|ref|XP_002429812.1| Peroxiredoxin-1, putative [Pediculus humanus corporis] gi|212514830|gb|EEB17074.1| Peroxiredoxin-1, putative [Pediculus humanus corporis]

 Score =  131 bits (330), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/87 (72%), Positives = 74/87 (85%), Gaps = 1/87 (1%)

Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W ++V + DGG+G +KYPLL+DF K IA SYGVLIES+GI LRGLFIID KG++R  +V
Sbjct: 111 AW-QNVSKKDGGIGSIKYPLLSDFTKTIAKSYGVLIESSGIALRGLFIIDDKGIIRHTSV 169

Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+EVLRLVKAFQF DKHGE
Sbjct: 170 NDLPVGRSVDEVLRLVKAFQFNDKHGE 196

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193627312|ref|XP_001948034.1| PREDICTED: thioredoxin-dependent peroxide reductase, mitochondrial-like isoform 2 [Acyrthosiphon pisum] gi|328698588|ref|XP_003240676.1| PREDICTED: thioredoxin-dependent peroxide reductase, mitochondrial-like [Acyrthosiphon pisum]

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 61/83 (73%), Positives = 71/83 (85%)

Query: 14  DVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLP 73
           +  +  GGLG L YPLL+D+ KEIA +Y VLIE  GIPLRGLFIID KG++RQIT+NDLP
Sbjct: 128 NTPRKHGGLGGLCYPLLSDYNKEIAKAYDVLIEPDGIPLRGLFIIDPKGIIRQITINDLP 187

Query: 74  VGRSVEEVLRLVKAFQFVDKHGE 96
           VGRSV+EVLRLV+AFQFVDKHGE
Sbjct: 188 VGRSVDEVLRLVQAFQFVDKHGE 210

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321452529|gb|EFX63892.1| hypothetical protein DAPPUDRAFT_305931 [Daphnia pulex]

 Score =  125 bits (315), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 60/87 (68%), Positives = 71/87 (81%), Gaps = 1/87 (1%)

Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+ +  + +GGLG L YPLLADF K I+  YGVLIE AGI LRGLFIID  GV+RQ+T+
Sbjct: 117 AWI-NTSRKEGGLGGLNYPLLADFHKTISRDYGVLIEKAGIALRGLFIIDPTGVVRQVTI 175

Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E LRL+KAFQFV+KHGE
Sbjct: 176 NDLPVGRSVDETLRLIKAFQFVEKHGE 202

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345324856|ref|XP_001510098.2| PREDICTED: peroxiredoxin-2-like [Ornithorhynchus anatinus]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/96 (62%), Positives = 71/96 (73%), Gaps = 3/96 (3%)

Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+ +  +  GGLG +  PLLAD    IAT YGVL E  GI  RGLFIID KG++RQIT+
Sbjct: 85  AWI-NTPRNTGGLGTMNIPLLADLTHSIATDYGVLKEDEGIAYRGLFIIDNKGIVRQITI 143

Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGEGSKRVPSGP 105
           NDLPVGRSVEE+LRLV+AFQ+ DKHGE S R  +GP
Sbjct: 144 NDLPVGRSVEEILRLVQAFQYTDKHGEASHR--AGP 177

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|384497087|gb|EIE87578.1| peroxiredoxin-1 [Rhizopus delemar RA 99-880]

 Score =  123 bits (308), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 71/87 (81%), Gaps = 1/87 (1%)

Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+ +  +  GGLG++K PLLAD  K IA  YGVLIE AGI LRGLFIID +GV+RQIT+
Sbjct: 41  AWI-NTPRKQGGLGEMKIPLLADKTKSIAKDYGVLIEEAGIALRGLFIIDPQGVVRQITI 99

Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+EVLRLV+AFQF DKHGE
Sbjct: 100 NDLPVGRSVDEVLRLVEAFQFTDKHGE 126

Source: Rhizopus delemar RA 99-880

Species: Rhizopus delemar

Genus: Rhizopus

Family: Rhizopodaceae

Order: Mucorales

Superkingdom: Eukaryota

>gi|170048401|ref|XP_001852614.1| peroxiredoxin-2 [Culex quinquefasciatus] gi|167870535|gb|EDS33918.1| peroxiredoxin-2 [Culex quinquefasciatus]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 70/87 (80%), Gaps = 1/87 (1%)

Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W    ++  GGLG L+YPLLAD  K+I+  YGVL+E AGI LRGLFIID  GV+RQ+T+
Sbjct: 117 AWCNTPRKS-GGLGKLEYPLLADLTKKISADYGVLLEEAGISLRGLFIIDPNGVVRQVTI 175

Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E LRL+KAFQFV+KHGE
Sbjct: 176 NDLPVGRSVDETLRLIKAFQFVEKHGE 202

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|384485578|gb|EIE77758.1| peroxiredoxin-1 [Rhizopus delemar RA 99-880]

 Score =  122 bits (307), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 60/87 (68%), Positives = 71/87 (81%), Gaps = 1/87 (1%)

Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+ +  +  GGLG++K PLLAD  K IA  YG+LIE AGI LRGLFIID +GV+RQIT+
Sbjct: 41  AWI-NTPRKQGGLGEMKIPLLADKTKSIAKDYGILIEEAGIALRGLFIIDPQGVVRQITI 99

Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+EVLRLV+AFQF DKHGE
Sbjct: 100 NDLPVGRSVDEVLRLVEAFQFTDKHGE 126

Source: Rhizopus delemar RA 99-880

Species: Rhizopus delemar

Genus: Rhizopus

Family: Rhizopodaceae

Order: Mucorales

Superkingdom: Eukaryota

>gi|67083703|gb|AAY66786.1| mitochondrial truncated thioredoxin-dependent peroxide reductase precursor, partial [Ixodes scapularis]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 69/83 (83%)

Query: 14  DVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLP 73
           +  +  GGLG +  PLL+DF K+IA  YGVL+E AG+ LRGLFIID KGV+RQITVNDLP
Sbjct: 123 NTPRKQGGLGKMNIPLLSDFNKQIARDYGVLLEEAGLALRGLFIIDPKGVVRQITVNDLP 182

Query: 74  VGRSVEEVLRLVKAFQFVDKHGE 96
           VGRSV+E LRLVKAFQFV+KHGE
Sbjct: 183 VGRSVDETLRLVKAFQFVEKHGE 205

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|67083335|gb|AAY66603.1| thioredoxin-dependent peroxide reductase [Ixodes scapularis]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 69/83 (83%)

Query: 14  DVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLP 73
           +  +  GGLG +  PLL+DF K+IA  YGVL+E AG+ LRGLFIID KGV+RQITVNDLP
Sbjct: 123 NTPRKQGGLGKMNIPLLSDFNKQIARDYGVLLEDAGLALRGLFIIDPKGVVRQITVNDLP 182

Query: 74  VGRSVEEVLRLVKAFQFVDKHGE 96
           VGRSV+E LRLVKAFQFV+KHGE
Sbjct: 183 VGRSVDETLRLVKAFQFVEKHGE 205

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442749885|gb|JAA67102.1| Putative alkyl hydroperoxide reductase thiol specific antioxidant [Ixodes ricinus]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/83 (71%), Positives = 69/83 (83%)

Query: 14  DVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLP 73
           +  +  GGLG +  PLL+DF K+IA  YGVL+E AG+ LRGLFIID KGV+RQITVNDLP
Sbjct: 123 NTPRKQGGLGKMNIPLLSDFNKQIARDYGVLLEDAGLALRGLFIIDPKGVVRQITVNDLP 182

Query: 74  VGRSVEEVLRLVKAFQFVDKHGE 96
           VGRSV+E LRLVKAFQFV+KHGE
Sbjct: 183 VGRSVDETLRLVKAFQFVEKHGE 205

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
UNIPROTKB|G1K326	201	PRDX1 "Peroxiredoxin-1" [Gallu	0.809	0.422	0.662	1.8e-25
UNIPROTKB|P0CB50	199	PRDX1 "Peroxiredoxin-1" [Gallu	0.809	0.427	0.662	1.8e-25
UNIPROTKB|F1S3U9	197	PRDX1 "Uncharacterized protein	0.876	0.467	0.612	4.6e-25
TIGR_CMR|GSU_3246	201	GSU_3246 "thioredoxin peroxida	0.742	0.388	0.653	4.6e-25
FB|FBgn0038519	234	Prx3 "Peroxiredoxin 3" [Drosop	0.809	0.363	0.616	9.7e-25
UNIPROTKB|F1SDX9	198	PRDX2 "Peroxiredoxin-2" [Sus s	0.809	0.429	0.651	9.7e-25
UNIPROTKB|Q9NL98	195	Q9NL98 "Peroxiredoxin" [Ascari	0.809	0.435	0.639	1.2e-24
RGD|620039	199	Prdx1 "peroxiredoxin 1" [Rattu	0.809	0.427	0.639	1.2e-24
MGI|MGI:99523	199	Prdx1 "peroxiredoxin 1" [Mus m	0.809	0.427	0.627	1.6e-24
CGD|CAL0005458	196	TSA1 [Candida albicans (taxid:	0.866	0.464	0.569	2e-24

UNIPROTKB|G1K326 PRDX1 "Peroxiredoxin-1" [Gallus gallus (taxid:9031)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 57/86 (66%), Positives = 67/86 (77%)

Query:    11 WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
             W+   K+  GGLG +K PL++D K+ IA  YGVL E  GI  RGLFIID KG+LRQIT+N
Sbjct:    89 WINTPKK-QGGLGTMKIPLVSDTKRVIAKDYGVLKEDEGIAYRGLFIIDEKGILRQITIN 147

Query:    71 DLPVGRSVEEVLRLVKAFQFVDKHGE 96
             DLPVGRSV+E LRLV+AFQF DKHGE
Sbjct:   148 DLPVGRSVDETLRLVQAFQFTDKHGE 173

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008379 "thioredoxin peroxidase activity" evidence=IEA

GO:0019430 "removal of superoxide radicals" evidence=IEA

GO:0032872 "regulation of stress-activated MAPK cascade" evidence=IEA

GO:0034101 "erythrocyte homeostasis" evidence=IEA

GO:0042267 "natural killer cell mediated cytotoxicity" evidence=IEA

GO:0042345 "regulation of NF-kappaB import into nucleus" evidence=IEA

GO:0042744 "hydrogen peroxide catabolic process" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

UNIPROTKB|P0CB50 PRDX1 "Peroxiredoxin-1" [Gallus gallus (taxid:9031)]

 Score = 289 (106.8 bits), Expect = 1.8e-25, P = 1.8e-25
 Identities = 57/86 (66%), Positives = 67/86 (77%)

Query:    11 WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
             W+   K+  GGLG +K PL++D K+ IA  YGVL E  GI  RGLFIID KG+LRQIT+N
Sbjct:    87 WINTPKK-QGGLGTMKIPLVSDTKRVIAKDYGVLKEDEGIAYRGLFIIDEKGILRQITIN 145

Query:    71 DLPVGRSVEEVLRLVKAFQFVDKHGE 96
             DLPVGRSV+E LRLV+AFQF DKHGE
Sbjct:   146 DLPVGRSVDETLRLVQAFQFTDKHGE 171

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0008379 "thioredoxin peroxidase activity" evidence=IEA

GO:0019430 "removal of superoxide radicals" evidence=IEA

GO:0032872 "regulation of stress-activated MAPK cascade" evidence=IEA

GO:0034101 "erythrocyte homeostasis" evidence=IEA

GO:0042267 "natural killer cell mediated cytotoxicity" evidence=IEA

GO:0042345 "regulation of NF-kappaB import into nucleus" evidence=IEA

GO:0042744 "hydrogen peroxide catabolic process" evidence=IEA

GO:0042802 "identical protein binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|F1S3U9 PRDX1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 57/93 (61%), Positives = 68/93 (73%)

Query:     4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGV 63
             VD    +W+   K+  GGLG +  PL++D K+ IA  YGVL    GI  RGLFIID KG+
Sbjct:    78 VDLTSVIWINTPKK-QGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGI 136

Query:    64 LRQITVNDLPVGRSVEEVLRLVKAFQFVDKHGE 96
             LRQIT+NDLPVGRSV+E LRLV+AFQF DKHGE
Sbjct:   137 LRQITINDLPVGRSVDETLRLVQAFQFTDKHGE 169

GO:0042802 "identical protein binding" evidence=IEA

GO:0042744 "hydrogen peroxide catabolic process" evidence=IEA

GO:0042345 "regulation of NF-kappaB import into nucleus" evidence=IEA

GO:0042267 "natural killer cell mediated cytotoxicity" evidence=IEA

GO:0034101 "erythrocyte homeostasis" evidence=IEA

GO:0032872 "regulation of stress-activated MAPK cascade" evidence=IEA

GO:0019430 "removal of superoxide radicals" evidence=IEA

GO:0008379 "thioredoxin peroxidase activity" evidence=IEA

GO:0008283 "cell proliferation" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

TIGR_CMR|GSU_3246 GSU_3246 "thioredoxin peroxidase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 285 (105.4 bits), Expect = 4.6e-25, P = 4.6e-25
 Identities = 51/78 (65%), Positives = 66/78 (84%)

Query:    19 DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
             +GG+G+++YPL+AD KKEIAT YGVL E AG+ LRGLF+IDTKGV+R   +NDLP+GRSV
Sbjct:    93 NGGIGNIQYPLVADLKKEIATQYGVLFEGAGVALRGLFLIDTKGVVRHAVINDLPLGRSV 152

Query:    79 EEVLRLVKAFQFVDKHGE 96
             +E LR+V A QFV+ HG+
Sbjct:   153 DEALRMVDALQFVETHGD 170

GO:0008379 "thioredoxin peroxidase activity" evidence=ISS

GO:0019430 "removal of superoxide radicals" evidence=ISS

FB|FBgn0038519 Prx3 "Peroxiredoxin 3" [Drosophila melanogaster (taxid:7227)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 53/86 (61%), Positives = 69/86 (80%)

Query:    11 WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
             W  +V + +GG+G LKYPLL+D  K+I+  Y VL++  GI LRG FIID  G+LRQ ++N
Sbjct:   120 WC-NVDRKNGGVGQLKYPLLSDLTKKISADYDVLLDKEGISLRGTFIIDPNGILRQYSIN 178

Query:    71 DLPVGRSVEEVLRLVKAFQFVDKHGE 96
             DLPVGRSV+EVLRL+KAFQFV++HGE
Sbjct:   179 DLPVGRSVDEVLRLIKAFQFVEQHGE 204

GO:0008379 "thioredoxin peroxidase activity" evidence=ISS;IDA

GO:0004601 "peroxidase activity" evidence=NAS

GO:0016209 "antioxidant activity" evidence=ISS;NAS

GO:0042744 "hydrogen peroxide catabolic process" evidence=IDA

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0045454 "cell redox homeostasis" evidence=IGI;ISS

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IGI;IMP

GO:0008340 "determination of adult lifespan" evidence=IGI

UNIPROTKB|F1SDX9 PRDX2 "Peroxiredoxin-2" [Sus scrofa (taxid:9823)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 56/86 (65%), Positives = 67/86 (77%)

Query:    11 WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
             W+   ++ +GGLG LK PLLAD  + ++  YGVL E  GI  RGLFIID KGVLRQITVN
Sbjct:    86 WINTPRK-EGGLGPLKIPLLADVTRNLSLDYGVLKEDEGIAYRGLFIIDGKGVLRQITVN 144

Query:    71 DLPVGRSVEEVLRLVKAFQFVDKHGE 96
             DLPVGRSV+E LRLV+AFQ+ D+HGE
Sbjct:   145 DLPVGRSVDEALRLVQAFQYTDEHGE 170

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0019430 "removal of superoxide radicals" evidence=IEA

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0016209 "antioxidant activity" evidence=IEA

UNIPROTKB|Q9NL98 Q9NL98 "Peroxiredoxin" [Ascaris suum (taxid:6253)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 55/86 (63%), Positives = 67/86 (77%)

Query:    11 WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
             W+   ++  GGLG++K P+++D   +I+  YGVL E  GI  RGLFIID KG+LRQITVN
Sbjct:    84 WINTPRK-QGGLGEMKIPIISDNNHQISRDYGVLKEDDGIAYRGLFIIDPKGILRQITVN 142

Query:    71 DLPVGRSVEEVLRLVKAFQFVDKHGE 96
             DLPVGRSV E LRLV+AFQFVDKHGE
Sbjct:   143 DLPVGRSVTETLRLVQAFQFVDKHGE 168

GO:0004601 "peroxidase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=NAS

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0008379 "thioredoxin peroxidase activity" evidence=IDA

GO:0016209 "antioxidant activity" evidence=IDA

RGD|620039 Prdx1 "peroxiredoxin 1" [Rattus norvegicus (taxid:10116)]

 Score = 281 (104.0 bits), Expect = 1.2e-24, P = 1.2e-24
 Identities = 55/86 (63%), Positives = 66/86 (76%)

Query:    11 WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
             W+   K+  GGLG +  PL++D K+ IA  YGVL    GI  RGLFIID KG+LRQIT+N
Sbjct:    87 WINTPKK-QGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITIN 145

Query:    71 DLPVGRSVEEVLRLVKAFQFVDKHGE 96
             DLPVGRSV+E+LRLV+AFQF DKHGE
Sbjct:   146 DLPVGRSVDEILRLVQAFQFTDKHGE 171

GO:0000302 "response to reactive oxygen species" evidence=ISO

GO:0004601 "peroxidase activity" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005719 "nuclear euchromatin" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=ISO

GO:0005759 "mitochondrial matrix" evidence=IDA

GO:0005782 "peroxisomal matrix" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=ISO;IDA

GO:0008283 "cell proliferation" evidence=IEA;ISO

GO:0008379 "thioredoxin peroxidase activity" evidence=IEA;ISO

GO:0019430 "removal of superoxide radicals" evidence=IEA;ISO

GO:0020037 "heme binding" evidence=IPI

GO:0032872 "regulation of stress-activated MAPK cascade" evidence=IEA;ISO

GO:0034101 "erythrocyte homeostasis" evidence=IEA;ISO

GO:0042267 "natural killer cell mediated cytotoxicity" evidence=IEA;ISO

GO:0042345 "regulation of NF-kappaB import into nucleus" evidence=IEA;ISO

GO:0042470 "melanosome" evidence=IEA

GO:0042744 "hydrogen peroxide catabolic process" evidence=IEA;ISO

GO:0042802 "identical protein binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0051920 "peroxiredoxin activity" evidence=IDA

MGI|MGI:99523 Prdx1 "peroxiredoxin 1" [Mus musculus (taxid:10090)]

 Score = 280 (103.6 bits), Expect = 1.6e-24, P = 1.6e-24
 Identities = 54/86 (62%), Positives = 66/86 (76%)

Query:    11 WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
             W+   K+  GGLG +  PL++D K+ IA  YGVL    GI  RGLFIID KG+LRQIT+N
Sbjct:    87 WINTPKK-QGGLGPMNIPLISDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITIN 145

Query:    71 DLPVGRSVEEVLRLVKAFQFVDKHGE 96
             DLPVGRSV+E++RLV+AFQF DKHGE
Sbjct:   146 DLPVGRSVDEIIRLVQAFQFTDKHGE 171

GO:0000302 "response to reactive oxygen species" evidence=IMP

GO:0004601 "peroxidase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0006979 "response to oxidative stress" evidence=IMP;IDA

GO:0008283 "cell proliferation" evidence=IMP

GO:0008379 "thioredoxin peroxidase activity" evidence=ISO

GO:0016209 "antioxidant activity" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0019430 "removal of superoxide radicals" evidence=IMP

GO:0032872 "regulation of stress-activated MAPK cascade" evidence=IMP

GO:0034101 "erythrocyte homeostasis" evidence=IMP

GO:0042267 "natural killer cell mediated cytotoxicity" evidence=IMP

GO:0042345 "regulation of NF-kappaB import into nucleus" evidence=IMP

GO:0042744 "hydrogen peroxide catabolic process" evidence=ISO

GO:0042802 "identical protein binding" evidence=IPI

GO:0051920 "peroxiredoxin activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=ISO

CGD|CAL0005458 TSA1 [Candida albicans (taxid:5476)]

 Score = 279 (103.3 bits), Expect = 2.0e-24, P = 2.0e-24
 Identities = 53/93 (56%), Positives = 71/93 (76%)

Query:     6 EGDEVWLE--DVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGV 63
             + +  WL   +V + DGG+G + +P+LAD    ++  YGVLIE  G+ LRG+F+ID KGV
Sbjct:    75 DSEYTWLAWTNVARKDGGIGKVDFPVLADTNHSLSRDYGVLIEEEGVALRGIFLIDPKGV 134

Query:    64 LRQITVNDLPVGRSVEEVLRLVKAFQFVDKHGE 96
             LRQIT+NDLPVGRSVEE LRL++AFQF +K+GE
Sbjct:   135 LRQITINDLPVGRSVEESLRLLEAFQFTEKYGE 167

GO:0030446 "hyphal cell wall" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008379 "thioredoxin peroxidase activity" evidence=IGI;ISS

GO:0005737 "cytoplasm" evidence=IDA

GO:0031505 "fungal-type cell wall organization" evidence=IGI;IMP

GO:0042744 "hydrogen peroxide catabolic process" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0051701 "interaction with host" evidence=IPI

GO:0030985 "high molecular weight kininogen binding" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0042542 "response to hydrogen peroxide" evidence=IMP

GO:0009277 "fungal-type cell wall" evidence=IDA

GO:0070301 "cellular response to hydrogen peroxide" evidence=IMP

GO:0030447 "filamentous growth" evidence=IMP

GO:0033554 "cellular response to stress" evidence=IGI

GO:0034599 "cellular response to oxidative stress" evidence=IEP;IGI;ISS

GO:0005829 "cytosol" evidence=IEA

GO:0005844 "polysome" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0036170 "filamentous growth of a population of unicellular organisms in response to starvation" evidence=IGI;IMP

GO:0036171 "filamentous growth of a population of unicellular organisms in response to chemical stimulus" evidence=IGI;IMP

GO:0006457 "protein folding" evidence=IEA

GO:0010468 "regulation of gene expression" evidence=IEA

GO:0001302 "replicative cell aging" evidence=IEA

GO:0042262 "DNA protection" evidence=IEA

GO:0000077 "DNA damage checkpoint" evidence=IEA

GO:0033194 "response to hydroperoxide" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0045454 "cell redox homeostasis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9Z0V6	PRDX3_RAT	1, ., 1, 1, ., 1, ., 1, 5	0.6279	0.8095	0.3307	yes	N/A
O74887	TSA1_SCHPO	1, ., 1, 1, ., 1, ., 1, 5	0.6265	0.7904	0.4322	yes	N/A
Q6ER94	BAS1_ORYSJ	1, ., 1, 1, ., 1, ., 1, 5	0.5243	0.7714	0.3103	yes	N/A
Q06830	PRDX1_HUMAN	1, ., 1, 1, ., 1, ., 1, 5	0.6436	0.8190	0.4321	yes	N/A
P0CB50	PRDX1_CHICK	1, ., 1, 1, ., 1, ., 1, 5	0.6551	0.8190	0.4321	yes	N/A
P34760	TSA1_YEAST	1, ., 1, 1, ., 1, ., 1, 5	0.5975	0.7809	0.4183	yes	N/A
Q21824	TDX1_CAEEL	1, ., 1, 1, ., 1, ., 1, 5	0.5977	0.8190	0.3805	yes	N/A
Q9BGI2	PRDX4_BOVIN	1, ., 1, 1, ., 1, ., 1, 5	0.6091	0.8190	0.3138	yes	N/A
P20108	PRDX3_MOUSE	1, ., 1, 1, ., 1, ., 1, 5	0.6279	0.8095	0.3307	yes	N/A
Q5E947	PRDX1_BOVIN	1, ., 1, 1, ., 1, ., 1, 5	0.6321	0.8190	0.4321	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	105
cd03015	173	cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family,	2e-44
PTZ00253	199	PTZ00253, PTZ00253, tryparedoxin peroxidase; Provi	1e-37
COG0450	194	COG0450, AhpC, Peroxiredoxin [Posttranslational mo	3e-33
PRK15000	200	PRK15000, PRK15000, peroxidase; Provisional	6e-24
cd03016	203	cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-c	2e-18
TIGR03137	187	TIGR03137, AhpC, peroxiredoxin	5e-18
cd02971	140	cd02971, PRX_family, Peroxiredoxin (PRX) family; c	1e-17
PTZ00137	261	PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provision	2e-17
PRK13189	222	PRK13189, PRK13189, peroxiredoxin; Provisional	1e-15
PRK13190	202	PRK13190, PRK13190, putative peroxiredoxin; Provis	2e-14
PRK13191	215	PRK13191, PRK13191, putative peroxiredoxin; Provis	4e-13
pfam00578	124	pfam00578, AhpC-TSA, AhpC/TSA family	6e-12
PRK13599	215	PRK13599, PRK13599, putative peroxiredoxin; Provis	6e-10
cd03018	149	cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family	9e-10
PRK10382	187	PRK10382, PRK10382, alkyl hydroperoxide reductase	3e-09
COG1225	157	COG1225, Bcp, Peroxiredoxin [Posttranslational mod	2e-08
cd03017	140	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bact	4e-06
pfam08534	142	pfam08534, Redoxin, Redoxin	5e-04

>gnl|CDD|239313 cd03015, PRX_Typ2cys, Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

 Score =  141 bits (357), Expect = 2e-44
 Identities = 49/78 (62%), Positives = 63/78 (80%)

Query: 19  DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
           +GGLG + +PLLAD KK+I+  YGVL E  G+ LRG FIID +G++R ITVNDLPVGRSV
Sbjct: 87  EGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSV 146

Query: 79  EEVLRLVKAFQFVDKHGE 96
           +E LR++ A QFV++HGE
Sbjct: 147 DETLRVLDALQFVEEHGE 164

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric interface in atypical 2-cys PRX and PRX5) at the opposite end of the monomer to form the stable decameric (pentamer of dimers) structure. Length = 173

>gnl|CDD|140280 PTZ00253, PTZ00253, tryparedoxin peroxidase; Provisional

 Score =  125 bits (314), Expect = 1e-37
 Identities = 55/77 (71%), Positives = 64/77 (83%)

Query: 20  GGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVE 79
           GGLG +  P+LAD  K IA SYGVL E  G+  RGLFIID KG+LRQITVND+PVGR+VE
Sbjct: 95  GGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVE 154

Query: 80  EVLRLVKAFQFVDKHGE 96
           EVLRL++AFQFV+KHGE
Sbjct: 155 EVLRLLEAFQFVEKHGE 171

Length = 199

>gnl|CDD|223527 COG0450, AhpC, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score =  113 bits (286), Expect = 3e-33
 Identities = 45/86 (52%), Positives = 62/86 (72%), Gaps = 1/86 (1%)

Query: 11  WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
           W   +++  GG+G +K+P++AD K EIA +YGVL    G+ LRG FIID  GV+R I VN
Sbjct: 84  WKATIRE-AGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVN 142

Query: 71  DLPVGRSVEEVLRLVKAFQFVDKHGE 96
            L +GR+V+E+LR++ A QFV KHGE
Sbjct: 143 PLTIGRNVDEILRVIDALQFVAKHGE 168

Length = 194

>gnl|CDD|184962 PRK15000, PRK15000, peroxidase; Provisional

 Score = 90.1 bits (223), Expect = 6e-24
 Identities = 37/77 (48%), Positives = 57/77 (74%)

Query: 20  GGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVE 79
           GG+G +KY ++AD K+EI  +YG+     G+ LRG F+ID  G++R   VNDLP+GR+++
Sbjct: 93  GGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNID 152

Query: 80  EVLRLVKAFQFVDKHGE 96
           E+LR+V A QF ++HG+
Sbjct: 153 EMLRMVDALQFHEEHGD 169

Length = 200

>gnl|CDD|239314 cd03016, PRX_1cys, Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

 Score = 75.3 bits (186), Expect = 2e-18
 Identities = 31/87 (35%), Positives = 50/87 (57%), Gaps = 4/87 (4%)

Query: 11  WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPL--RGLFIIDTKGVLRQIT 68
           W+ED+++  G   ++ +P++AD  +E+A   G++   AG  L  R +FIID    +R I 
Sbjct: 76  WIEDIEEYTGV--EIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLIL 133

Query: 69  VNDLPVGRSVEEVLRLVKAFQFVDKHG 95
                 GR+ +E+LR+V A Q  DKH 
Sbjct: 134 YYPATTGRNFDEILRVVDALQLTDKHK 160

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes and lung. The seed-specific plant 1-cys PRXs protect tissues from reactive oxygen species during desiccation and are also called rehydrins. Length = 203

>gnl|CDD|211789 TIGR03137, AhpC, peroxiredoxin

 Score = 74.4 bits (183), Expect = 5e-18
 Identities = 32/76 (42%), Positives = 50/76 (65%), Gaps = 1/76 (1%)

Query: 22  LGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEV 81
           +G + YP+L D    +  ++GVLIE AG+  RG F+ID +GV++ + ++D  +GR   E+
Sbjct: 89  IGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEIHDNGIGRDASEL 148

Query: 82  LRLVKAFQFVDKH-GE 96
           LR +KA Q+V  H GE
Sbjct: 149 LRKIKAAQYVAAHPGE 164

This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions]. Length = 187

>gnl|CDD|239269 cd02971, PRX_family, Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

 Score = 72.2 bits (178), Expect = 1e-17
 Identities = 30/64 (46%), Positives = 38/64 (59%), Gaps = 3/64 (4%)

Query: 22  LGDLKYPLLADFKKEIATSYGVLIE---SAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
            G L +PLL+D   E A +YGVLIE     G+  R  FIID  G +R + V  LP GR+ 
Sbjct: 77  EGGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLPTGRNA 136

Query: 79  EEVL 82
           EE+L
Sbjct: 137 EELL 140

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a cysteine sulfenic acid intermediate. The second step of the reaction, the resolution of the intermediate, distinguishes the different types of PRXs. The presence or absence of a second cysteine (the resolving cysteine) classifies PRXs as either belonging to the 2-cys or 1-cys type. The resolving cysteine of 2-cys PRXs is either on the same chain (atypical) or on the second chain (typical) of a functional homodimer. Structural and motif analysis of this growing family supports the need for a new classification system. The peroxidase activity of PRXs is regulated in vivo by irreversible cysteine over-oxidation into a sulfinic acid, phosphorylation and limited proteolysis. Length = 140

>gnl|CDD|173427 PTZ00137, PTZ00137, 2-Cys peroxiredoxin; Provisional

 Score = 73.8 bits (181), Expect = 2e-17
 Identities = 37/87 (42%), Positives = 54/87 (62%), Gaps = 4/87 (4%)

Query: 11  WLE-DVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
           W E DV+QG  G+  LK+PL +D  +E++ S+G L+   G   R   ++D  GV++ + V
Sbjct: 149 WKELDVRQG--GVSPLKFPLFSDISREVSKSFG-LLRDEGFSHRASVLVDKAGVVKHVAV 205

Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
            DL +GRSV+E LRL  A QF +K G 
Sbjct: 206 YDLGLGRSVDETLRLFDAVQFAEKTGN 232

Length = 261

>gnl|CDD|237297 PRK13189, PRK13189, peroxiredoxin; Provisional

 Score = 68.5 bits (168), Expect = 1e-15
 Identities = 35/87 (40%), Positives = 56/87 (64%), Gaps = 5/87 (5%)

Query: 11  WLEDVKQGDGGLG-DLKYPLLADFKKEIATSYGVLIESAG-IPLRGLFIIDTKGVLRQIT 68
           W+E +K+    LG ++++P++AD + EIA   G++    G   +R +FIID KG++R I 
Sbjct: 86  WVEWIKEK---LGVEIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAIL 142

Query: 69  VNDLPVGRSVEEVLRLVKAFQFVDKHG 95
                VGR+++E+LRLVKA Q  D+ G
Sbjct: 143 YYPQEVGRNMDEILRLVKALQTSDEKG 169

Length = 222

>gnl|CDD|106159 PRK13190, PRK13190, putative peroxiredoxin; Provisional

 Score = 65.3 bits (159), Expect = 2e-14
 Identities = 27/80 (33%), Positives = 50/80 (62%), Gaps = 2/80 (2%)

Query: 11  WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
           WL D+++  G    + +P++AD  KE+A  Y ++ E++G  +RG+FIID   ++R +   
Sbjct: 78  WLRDIEERFGI--KIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYY 135

Query: 71  DLPVGRSVEEVLRLVKAFQF 90
               GR+++E++R+ KA Q 
Sbjct: 136 PAETGRNIDEIIRITKALQV 155

Length = 202

>gnl|CDD|183885 PRK13191, PRK13191, putative peroxiredoxin; Provisional

 Score = 61.8 bits (150), Expect = 4e-13
 Identities = 26/73 (35%), Positives = 47/73 (64%), Gaps = 1/73 (1%)

Query: 24  DLKYPLLADFKKEIATSYGVL-IESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVL 82
           ++ +P++AD    +A   G++  ES+   +R +FI+D KG +R I    + +GR+++E+L
Sbjct: 95  EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEIL 154

Query: 83  RLVKAFQFVDKHG 95
           R ++A Q VDK G
Sbjct: 155 RAIRALQLVDKAG 167

Length = 215

>gnl|CDD|216002 pfam00578, AhpC-TSA, AhpC/TSA family

 Score = 56.8 bits (138), Expect = 6e-12
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 24  DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQI 67
            L +PLL+D   E+A +YGVL E  G+ LR  F+ID  G +R I
Sbjct: 81  GLPFPLLSDPDGEVAKAYGVLNEEEGLALRTTFVIDPDGKIRYI 124

This family contains proteins related to alkyl hydroperoxide reductase (AhpC) and thiol specific antioxidant (TSA). Length = 124

>gnl|CDD|106544 PRK13599, PRK13599, putative peroxiredoxin; Provisional

 Score = 53.6 bits (128), Expect = 6e-10
 Identities = 28/86 (32%), Positives = 49/86 (56%), Gaps = 3/86 (3%)

Query: 11  WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGI-PLRGLFIIDTKGVLRQITV 69
           W+E +K        + +P++AD   +++   G++    G   +R +FI+D KG +R I  
Sbjct: 79  WVEWIKDNTNI--AIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMY 136

Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHG 95
               VGR+V+E+LR +KA Q  D++G
Sbjct: 137 YPQEVGRNVDEILRALKALQTADQYG 162

Length = 215

>gnl|CDD|239316 cd03018, PRX_AhpE_like, Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

 Score = 51.9 bits (125), Expect = 9e-10
 Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 25  LKYPLLADF--KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVL 82
           L +PLL+DF    E+A +YGV  E  G+  R +F+ID  G++R   V+D    R + +  
Sbjct: 85  LTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYD 144

Query: 83  RLVKA 87
             + A
Sbjct: 145 EALDA 149

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers. Length = 149

>gnl|CDD|182423 PRK10382, PRK10382, alkyl hydroperoxide reductase subunit C; Provisional

 Score = 51.1 bits (122), Expect = 3e-09
 Identities = 20/73 (27%), Positives = 40/73 (54%)

Query: 22  LGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEV 81
           +  +KY ++ D    +  ++  + E  G+  R  F++D +G+++ I V    +GR   ++
Sbjct: 89  IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDL 148

Query: 82  LRLVKAFQFVDKH 94
           LR +KA Q+V  H
Sbjct: 149 LRKIKAAQYVASH 161

Length = 187

>gnl|CDD|224146 COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

 Score = 48.8 bits (117), Expect = 2e-08
 Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 7/72 (9%)

Query: 24  DLKYPLLADFKKEIATSYGVLIESAGI------PLRGLFIIDTKGVLRQITVNDLPVGRS 77
            L +PLL+D   E+A +YGV  E            R  F+ID  G +R +       G  
Sbjct: 86  GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVWRKVKVKG-H 144

Query: 78  VEEVLRLVKAFQ 89
            +EVL  +K   
Sbjct: 145 ADEVLAALKKLA 156

Length = 157

>gnl|CDD|239315 cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

 Score = 42.1 bits (100), Expect = 4e-06
 Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 4/63 (6%)

Query: 24  DLKYPLLADFKKEIATSYGVLIE---SAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEE 80
            L +PLL+D   ++A +YGV  E         R  F+ID  G + ++     P G   EE
Sbjct: 79  GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVKPKG-HAEE 137

Query: 81  VLR 83
           VL 
Sbjct: 138 VLE 140

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), which functions as an alkyl-hydroperoxide reductase during post-diauxic growth. Length = 140

>gnl|CDD|219888 pfam08534, Redoxin, Redoxin

 Score = 36.5 bits (85), Expect = 5e-04
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 2/60 (3%)

Query: 24  DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRS-VEEVL 82
            LKYP+LAD       +YG+  + AG+     F+ID  G +  + V   P   S  E VL
Sbjct: 84  GLKYPVLADRDGAFTKAYGLTED-AGLRTPRYFLIDEDGKVVYLEVGPDPGDVSDAEAVL 142

This family of redoxins includes peroxiredoxin, thioredoxin and glutaredoxin proteins. Length = 142

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
COG0450	194	AhpC Peroxiredoxin [Posttranslational modification	99.94
KOG0852|consensus	196		99.91
PRK10382	187	alkyl hydroperoxide reductase subunit C; Provision	99.86
PRK15000	200	peroxidase; Provisional	99.86
PRK13191	215	putative peroxiredoxin; Provisional	99.85
PTZ00137	261	2-Cys peroxiredoxin; Provisional	99.84
PRK13190	202	putative peroxiredoxin; Provisional	99.81
PRK13189	222	peroxiredoxin; Provisional	99.81
PRK13599	215	putative peroxiredoxin; Provisional	99.81
cd03016	203	PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX sub	99.79
PTZ00253	199	tryparedoxin peroxidase; Provisional	99.77
COG1225	157	Bcp Peroxiredoxin [Posttranslational modification,	99.77
TIGR03137	187	AhpC peroxiredoxin. This gene contains two invaria	99.76
KOG0854|consensus	224		99.71
cd03015	173	PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-	99.7
PRK00522	167	tpx lipid hydroperoxide peroxidase; Provisional	99.49
cd03013	155	PRX5_like Peroxiredoxin (PRX) family, PRX5-like su	99.46
cd03014	143	PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical	99.35
cd03018	149	PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-lik	99.27
PRK09437	154	bcp thioredoxin-dependent thiol peroxidase; Review	99.18
cd03017	140	PRX_BCP Peroxiredoxin (PRX) family, Bacterioferrit	99.16
cd02971	140	PRX_family Peroxiredoxin (PRX) family; composed of	99.06
cd03012	126	TlpA_like_DipZ_like TlpA-like family, DipZ-like su	99.0
cd02970	149	PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypot	99.0
KOG0855|consensus	211		99.0
PF00578	124	AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Per	98.99
COG2077	158	Tpx Peroxiredoxin [Posttranslational modification,	98.97
PRK15412	185	thiol:disulfide interchange protein DsbE; Provisio	98.87
PF08534	146	Redoxin: Redoxin; InterPro: IPR013740 This redoxin	98.84
TIGR00385	173	dsbE periplasmic protein thiol:disulfide oxidoredu	98.82
cd02969	171	PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypot	98.81
TIGR01626	184	ytfJ_HI0045 conserved hypothetical protein YtfJ-fa	98.78
PRK03147	173	thiol-disulfide oxidoreductase; Provisional	98.75
PLN02412	167	probable glutathione peroxidase	98.74
TIGR02540	153	gpx7 putative glutathione peroxidase Gpx7. This mo	98.7
cd03010	127	TlpA_like_DsbE TlpA-like family, DsbE (also known	98.64
cd00340	152	GSH_Peroxidase Glutathione (GSH) peroxidase family	98.63
cd03011	123	TlpA_like_ScsD_MtbDsbE TlpA-like family, suppresso	98.54
TIGR02661	189	MauD methylamine dehydrogenase accessory protein M	98.46
PTZ00056	199	glutathione peroxidase; Provisional	98.41
cd02968	142	SCO SCO (an acronym for Synthesis of Cytochrome c	98.36
cd02966	116	TlpA_like_family TlpA-like family; composed of Tlp	98.33
PLN02399	236	phospholipid hydroperoxide glutathione peroxidase	98.33
PTZ00256	183	glutathione peroxidase; Provisional	98.31
cd02967	114	mauD Methylamine utilization (mau) D family; mauD	98.08
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	98.0
PRK13728	181	conjugal transfer protein TrbB; Provisional	97.88
cd03008	146	TryX_like_RdCVF Tryparedoxin (TryX)-like family, R	97.78
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	97.75
cd03009	131	TryX_like_TryX_NRX Tryparedoxin (TryX)-like family	97.2
PF13911	115	AhpC-TSA_2: AhpC/TSA antioxidant enzyme	97.18
TIGR02738	153	TrbB type-F conjugative transfer system pilin asse	96.89
PF09695	160	YtfJ_HI0045: Bacterial protein of unknown function	96.82
cd02964	132	TryX_like_family Tryparedoxin (TryX)-like family;	96.72
PF13905	95	Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_	96.62
COG0678	165	AHP1 Peroxiredoxin [Posttranslational modification	96.59
PF13098	112	Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_	96.37
cd02950	142	TxlA TRX-like protein A (TxlA) family; TxlA was or	96.09
KOG0541|consensus	171		96.06
cd02951	125	SoxW SoxW family; SoxW is a bacterial periplasmic	95.94
COG3054	184	Predicted transcriptional regulator [General funct	95.87
PRK10606	183	btuE putative glutathione peroxidase; Provisional	95.57
PF00837	237	T4_deiodinase: Iodothyronine deiodinase; InterPro:	95.31
TIGR02740	271	TraF-like TraF-like protein. This protein is relat	95.07
cd03065	120	PDI_b_Calsequestrin_N PDIb family, Calsequestrin s	94.92
cd02956	96	ybbN ybbN protein family; ybbN is a hypothetical p	94.74
cd02953	104	DsbDgamma DsbD gamma family; DsbD gamma is the C-t	94.35
cd02963	111	TRX_DnaJ TRX domain, DnaJ domain containing protei	94.33
PRK11509	132	hydrogenase-1 operon protein HyaE; Provisional	94.1
cd02948	102	TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fus	93.91
cd02958	114	UAS UAS family; UAS is a domain of unknown functio	93.82
PRK09381	109	trxA thioredoxin; Provisional	93.48
TIGR01126	102	pdi_dom protein disulfide-isomerase domain. This m	93.21
cd02994	101	PDI_a_TMX PDIa family, TMX subfamily; composed of	92.97
PRK10996	139	thioredoxin 2; Provisional	92.71
TIGR01068	101	thioredoxin thioredoxin. Several proteins, such as	92.69
PF05176	252	ATP-synt_10: ATP10 protein; InterPro: IPR007849 Th	92.13
PF02630	174	SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This fam	92.05
cd02961	101	PDI_a_family Protein Disulfide Isomerase (PDIa) fa	92.04
PF13728	215	TraF: F plasmid transfer operon protein	91.41
cd03005	102	PDI_a_ERp46 PDIa family, endoplasmic reticulum pro	91.39
COG1999	207	Uncharacterized protein SCO1/SenC/PrrC, involved i	91.25
cd02985	103	TRX_CDSP32 TRX family, chloroplastic drought-induc	90.64
cd02949	97	TRX_NTR TRX domain, novel NADPH thioredoxin reduct	90.44
PRK00293	571	dipZ thiol:disulfide interchange protein precursor	90.15
KOG0910|consensus	150		90.15
cd02955	124	SSP411 TRX domain, SSP411 protein family; members	89.94
PF13778	118	DUF4174: Domain of unknown function (DUF4174)	89.8
COG0386	162	BtuE Glutathione peroxidase [Posttranslational mod	89.72
cd02996	108	PDI_a_ERp44 PDIa family, endoplasmic reticulum pro	89.45
PF00085	103	Thioredoxin: Thioredoxin; InterPro: IPR013766 Thio	88.61
cd03004	104	PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfam	88.58
cd02954	114	DIM1 Dim1 family; Dim1 is also referred to as U5 s	88.03
cd03002	109	PDI_a_MPD1_like PDI family, MPD1-like subfamily; c	87.91
PTZ00443	224	Thioredoxin domain-containing protein; Provisional	86.62
cd02965	111	HyaE HyaE family; HyaE is also called HupG and Hox	86.53
cd02997	104	PDI_a_PDIR PDIa family, PDIR subfamily; composed o	86.48
cd02998	105	PDI_a_ERp38 PDIa family, endoplasmic reticulum pro	86.11
cd02984	97	TRX_PICOT TRX domain, PICOT (for PKC-interacting c	85.33
cd03001	103	PDI_a_P5 PDIa family, P5 subfamily; composed of eu	84.01
PF03544	79	TonB_C: Gram-negative bacterial TonB protein C-ter	83.78
cd02947	93	TRX_family TRX family; composed of two groups: Gro	83.76
TIGR01352	74	tonB_Cterm TonB family C-terminal domain. This mod	83.42
cd02999	100	PDI_a_ERp44_like PDIa family, endoplasmic reticulu	82.98
KOG1651|consensus	171		82.51
TIGR02739	256	TraF type-F conjugative transfer system pilin asse	82.29
cd02975	113	PfPDO_like_N Pyrococcus furiosus protein disulfide	81.96
COG0810	244	TonB Periplasmic protein TonB, links inner and out	81.77
smart00594	122	UAS UAS domain.	81.25
PTZ00051	98	thioredoxin; Provisional	80.88
cd03000	104	PDI_a_TMX3 PDIa family, TMX3 subfamily; composed o	80.23

>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=1.9e-26  Score=163.71  Aligned_cols=96  Identities=47%  Similarity=0.826  Sum_probs=89.1

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      .++||++|++. .++.+++++++|||++|.+++||++||+..++.|.+.|++||||++|+||++.+++.+.+|+++|+||
T Consensus        77 s~fsH~aW~~~-~~~~~gi~~i~~PmiaD~~~~vs~~ygvl~~~~g~a~R~~FIIDp~g~ir~~~v~~~~iGRn~dEilR  155 (194)
T COG0450          77 SVFSHKAWKAT-IREAGGIGKIKFPMIADPKGEIARAYGVLHPEEGLALRGTFIIDPDGVIRHILVNPLTIGRNVDEILR  155 (194)
T ss_pred             cHHHHHHHHhc-HHhcCCccceecceEEcCchhHHHHcCCcccCCCcceeEEEEECCCCeEEEEEEecCCCCcCHHHHHH
Confidence            46899999954 45557888899999999999999999999988899999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhcCCcccC
Q psy13875         84 LVKAFQFVDKHGEGSKR  100 (105)
Q Consensus        84 ~l~~l~~~~~~~~~~~~  100 (105)
                      .|++||..++||++||+
T Consensus       156 ~idAlq~~~~hg~vcPa  172 (194)
T COG0450         156 VIDALQFVAKHGEVCPA  172 (194)
T ss_pred             HHHHHHHHHHhCCCccC
Confidence            99999999999999997

>KOG0852|consensus

Probab=99.91  E-value=3.9e-24  Score=149.88  Aligned_cols=95  Identities=58%  Similarity=0.976  Sum_probs=91.8

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      +++|.||+ +++++.+|++.+++|||||.+.++|+.||++.++.|++.|..||||++|++|++-+...+.+|+++|+|+.
T Consensus        78 ~fshlAW~-ntprk~gGlg~~~iPllsD~~~~IsrdyGvL~~~~G~~lRglfIId~~gi~R~it~NDlpvgRSVdE~lRL  156 (196)
T KOG0852|consen   78 VFSHLAWI-NTPRKQGGLGPLNIPLLSDLNHEISRDYGVLKEDEGIALRGLFIIDPDGILRQITINDLPVGRSVDETLRL  156 (196)
T ss_pred             hhhhhhHh-cCchhhCCcCccccceeeccchhhHHhcCceecCCCcceeeeEEEccccceEEeeecccCCCccHHHHHHH
Confidence            68999999 78999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhhhhhhcCCcccC
Q psy13875         85 VKAFQFVDKHGEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~~~~~~~  100 (105)
                      +++.|..++||++||+
T Consensus       157 vqAfQ~td~~geVcPa  172 (196)
T KOG0852|consen  157 VQAFQFTDEHGEVCPA  172 (196)
T ss_pred             HHHHhhhhccCccccC
Confidence            9999999999999986

>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional

Probab=99.86  E-value=1.5e-21  Score=138.68  Aligned_cols=93  Identities=25%  Similarity=0.518  Sum_probs=81.6

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      .+++|++|++..    ..+.+++||||||++++++++||+..+..|++.|+|||||++|+|+++++.....+++++++|+
T Consensus        75 ~~~~~~a~~~~~----~~~~~l~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfIID~~G~I~~~~~~~~~~~~~~~eil~  150 (187)
T PRK10382         75 THFTHKAWHSSS----ETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLR  150 (187)
T ss_pred             CHHHHHHHHHhh----ccccCCceeEEEcCchHHHHHcCCCcccCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHH
Confidence            357899999753    1234789999999999999999998665677889999999999999999988788899999999


Q ss_pred             HHHhhhhhhhc-CCcccC
Q psy13875         84 LVKAFQFVDKH-GEGSKR  100 (105)
Q Consensus        84 ~l~~l~~~~~~-~~~~~~  100 (105)
                      .|+++|+.+++ |++||+
T Consensus       151 ~l~alq~~~~~~g~~~p~  168 (187)
T PRK10382        151 KIKAAQYVASHPGEVCPA  168 (187)
T ss_pred             HHHhhhhHhhcCCeEeCC
Confidence            99999999999 799975

>PRK15000 peroxidase; Provisional

Probab=99.86  E-value=1.6e-21  Score=139.57  Aligned_cols=95  Identities=40%  Similarity=0.810  Sum_probs=84.0

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      +++|++|++.... .+++.+++||++||.+++++++||+..+..|++.|++||||++|+|+++++++.+.+|+++|+|+.
T Consensus        79 ~~~~~~w~~~~~~-~~g~~~i~fpllsD~~~~ia~~ygv~~~~~g~~~r~tfiID~~G~I~~~~~~~~~~gr~~~eilr~  157 (200)
T PRK15000         79 EFVHNAWRNTPVD-KGGIGPVKYAMVADVKREIQKAYGIEHPDEGVALRGSFLIDANGIVRHQVVNDLPLGRNIDEMLRM  157 (200)
T ss_pred             HHHHHHHHhhHHH-hCCccccCceEEECCCcHHHHHcCCccCCCCcEEeEEEEECCCCEEEEEEecCCCCCCCHHHHHHH
Confidence            5789999865322 234446899999999999999999987767888999999999999999999999999999999999


Q ss_pred             HHhhhhhhhcCCcccC
Q psy13875         85 VKAFQFVDKHGEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~~~~~~~  100 (105)
                      |++||..+++|++||+
T Consensus       158 l~al~~~~~~~~~~p~  173 (200)
T PRK15000        158 VDALQFHEEHGDVCPA  173 (200)
T ss_pred             HHHhhhHHhcCCCcCC
Confidence            9999999999999986

>PRK13191 putative peroxiredoxin; Provisional

Probab=99.85  E-value=6.4e-21  Score=137.88  Aligned_cols=94  Identities=27%  Similarity=0.537  Sum_probs=81.3

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC-CccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA-GIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~-G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      +++|++|++..... .++ +++||+|||.+++++++||+..+.. +.+.|++||||++|+|+++++++.+.+||++|+|+
T Consensus        78 ~~~h~aw~~~~~~~-~~~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr  155 (215)
T PRK13191         78 NISHIEWVMWIEKN-LKV-EVPFPIIADPMGNVAKRLGMIHAESSTATVRAVFIVDDKGTVRLILYYPMEIGRNIDEILR  155 (215)
T ss_pred             HHHHHHHHhhHHHh-cCC-CCceEEEECCchHHHHHcCCcccccCCceeEEEEEECCCCEEEEEEecCCCCCCCHHHHHH
Confidence            57999999644221 233 7899999999999999999976433 56789999999999999999999889999999999


Q ss_pred             HHHhhhhhhhcCCcccC
Q psy13875         84 LVKAFQFVDKHGEGSKR  100 (105)
Q Consensus        84 ~l~~l~~~~~~~~~~~~  100 (105)
                      .|++||..+++|++||+
T Consensus       156 ~l~alq~~~~~~~~~P~  172 (215)
T PRK13191        156 AIRALQLVDKAGVVTPA  172 (215)
T ss_pred             HHHHhhhhhhcCCCcCC
Confidence            99999999999999986

>PTZ00137 2-Cys peroxiredoxin; Provisional

Probab=99.84  E-value=1.5e-20  Score=139.57  Aligned_cols=94  Identities=36%  Similarity=0.669  Sum_probs=82.0

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      +++|++|++... ..++..+++||+|||.+++++++||+..+ .|++.|++||||++|+|+++++++...+++++|+|++
T Consensus       143 ~~~h~aw~~~~~-~~~g~~~l~fPlLsD~~~~iakayGv~~~-~g~a~R~tFIID~dG~I~~~~~~~~~~gr~v~eiLr~  220 (261)
T PTZ00137        143 PFSHKAWKELDV-RQGGVSPLKFPLFSDISREVSKSFGLLRD-EGFSHRASVLVDKAGVVKHVAVYDLGLGRSVDETLRL  220 (261)
T ss_pred             HHHHHHHHhhhh-hhccccCcceEEEEcCChHHHHHcCCCCc-CCceecEEEEECCCCEEEEEEEeCCCCCCCHHHHHHH
Confidence            578999996321 12344588999999999999999999764 4778999999999999999999888889999999999


Q ss_pred             HHhhhhhhhcCCcccC
Q psy13875         85 VKAFQFVDKHGEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~~~~~~~  100 (105)
                      |+++|+.+++|++||+
T Consensus       221 l~alq~~~~~g~~cPa  236 (261)
T PTZ00137        221 FDAVQFAEKTGNVCPV  236 (261)
T ss_pred             HHHhchhhhcCCCcCC
Confidence            9999999999999986

>PRK13190 putative peroxiredoxin; Provisional

Probab=99.81  E-value=1.2e-19  Score=129.92  Aligned_cols=94  Identities=30%  Similarity=0.582  Sum_probs=81.7

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      +++|++|+++..... ++ .++||+++|++++++++||+..+..|.+.|++||||++|+|+++..++...+++++|+++.
T Consensus        72 ~~~~~~w~~~~~~~~-g~-~~~fPll~D~~~~ia~~ygv~~~~~g~~~p~~fiId~~G~I~~~~~~~~~~gr~~~ellr~  149 (202)
T PRK13190         72 IYSHIAWLRDIEERF-GI-KIPFPVIADIDKELAREYNLIDENSGATVRGVFIIDPNQIVRWMIYYPAETGRNIDEIIRI  149 (202)
T ss_pred             HHHHHHHHHhHHHhc-CC-CceEEEEECCChHHHHHcCCccccCCcEEeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHH
Confidence            478999997643222 22 4799999999999999999986656778999999999999999999888889999999999


Q ss_pred             HHhhhhhhhcCCcccC
Q psy13875         85 VKAFQFVDKHGEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~~~~~~~  100 (105)
                      |+++|..+++|++||+
T Consensus       150 l~~l~~~~~~~~~~p~  165 (202)
T PRK13190        150 TKALQVNWKRKVATPA  165 (202)
T ss_pred             HHHhhhHHhcCCCcCC
Confidence            9999999999999986

>PRK13189 peroxiredoxin; Provisional

Probab=99.81  E-value=1.6e-19  Score=131.14  Aligned_cols=94  Identities=35%  Similarity=0.593  Sum_probs=81.0

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC-CccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA-GIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~-G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      +++|++|++...+. .++ +++||+++|.+++++++||+..+.. +.+.|++||||++|+|+++++++.+.+++++|+++
T Consensus        80 ~~~h~aw~~~~~~~-~g~-~i~fPllsD~~~~ia~~ygv~~~~~~~~~~r~tfIID~~G~Ir~~~~~~~~~gr~~~eilr  157 (222)
T PRK13189         80 VFSHIKWVEWIKEK-LGV-EIEFPIIADDRGEIAKKLGMISPGKGTNTVRAVFIIDPKGIIRAILYYPQEVGRNMDEILR  157 (222)
T ss_pred             HHHHHHHHHhHHHh-cCc-CcceeEEEcCccHHHHHhCCCccccCCCceeEEEEECCCCeEEEEEecCCCCCCCHHHHHH
Confidence            57899999764322 223 6899999999999999999985432 34789999999999999999998888999999999


Q ss_pred             HHHhhhhhhhcCCcccC
Q psy13875         84 LVKAFQFVDKHGEGSKR  100 (105)
Q Consensus        84 ~l~~l~~~~~~~~~~~~  100 (105)
                      .|+++|..+++|++||+
T Consensus       158 ~l~alq~~~~~~~~~p~  174 (222)
T PRK13189        158 LVKALQTSDEKGVATPA  174 (222)
T ss_pred             HHHHhhhHhhcCcCcCC
Confidence            99999999999999986

>PRK13599 putative peroxiredoxin; Provisional

Probab=99.81  E-value=2.8e-19  Score=129.37  Aligned_cols=95  Identities=29%  Similarity=0.477  Sum_probs=80.4

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCC-ccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAG-IPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G-~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      +++|++|++.+... .+ .+++||+++|.+++++++||+..+..| .+.|++||||++|+|+++++++...+++++++++
T Consensus        73 ~~~~~~w~~~i~~~-~~-~~i~fPil~D~~~~va~~yg~~~~~~~~~~~R~tfIID~dG~Ir~~~~~p~~~gr~~~eilr  150 (215)
T PRK13599         73 VFSHIKWVEWIKDN-TN-IAIPFPVIADDLGKVSNQLGMIHPGKGTNTVRAVFIVDDKGTIRLIMYYPQEVGRNVDEILR  150 (215)
T ss_pred             HHHHHHHHHhHHHh-cC-CCCceeEEECCCchHHHHcCCCccCCCCceeeEEEEECCCCEEEEEEEcCCCCCCCHHHHHH
Confidence            57899999754321 11 278999999999999999999765433 2689999999999999999888888899999999


Q ss_pred             HHHhhhhhhhcCCcccCC
Q psy13875         84 LVKAFQFVDKHGEGSKRV  101 (105)
Q Consensus        84 ~l~~l~~~~~~~~~~~~~  101 (105)
                      +|++||..+++|++||+-
T Consensus       151 ~l~~lq~~~~~~~~~p~~  168 (215)
T PRK13599        151 ALKALQTADQYGVALPEK  168 (215)
T ss_pred             HHHHhhhhhhcCCCcCCC
Confidence            999999999999999863

>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine

Probab=99.79  E-value=1.1e-18  Score=124.82  Aligned_cols=94  Identities=32%  Similarity=0.580  Sum_probs=80.8

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC--CccceeEEEECCCCCEEEEEeccCCCCCCHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA--GIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVL   82 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~--G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil   82 (105)
                      .++|++|++++.... + .+++||+|+|++++++++||+.....  +.+.|++||||++|+|+++++++...+++.++++
T Consensus        70 ~~~~~~~~~~i~~~~-~-~~~~fpil~D~~~~ia~~yg~~~~~~~~~~~~r~~fiID~~G~I~~~~~~~~~~gr~~~ell  147 (203)
T cd03016          70 VESHIKWIEDIEEYT-G-VEIPFPIIADPDREVAKLLGMIDPDAGSTLTVRAVFIIDPDKKIRLILYYPATTGRNFDEIL  147 (203)
T ss_pred             HHHHHHHHhhHHHhc-C-CCCceeEEECchHHHHHHcCCccccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHH
Confidence            568999997654321 2 37899999999999999999986432  3468999999999999999999888899999999


Q ss_pred             HHHHhhhhhhhcCCcccC
Q psy13875         83 RLVKAFQFVDKHGEGSKR  100 (105)
Q Consensus        83 ~~l~~l~~~~~~~~~~~~  100 (105)
                      ++|++||..+++|++||+
T Consensus       148 ~~l~~lq~~~~~~~~~p~  165 (203)
T cd03016         148 RVVDALQLTDKHKVATPA  165 (203)
T ss_pred             HHHHHHhhHhhcCcCcCC
Confidence            999999999999999986

They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an

>PTZ00253 tryparedoxin peroxidase; Provisional

Probab=99.77  E-value=2.2e-18  Score=122.72  Aligned_cols=95  Identities=59%  Similarity=0.937  Sum_probs=81.6

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      .++|.+|.... +..+++++++||+|+|.++++++.||++....|++.|++||||++|+|+++++++...+++++++++.
T Consensus        81 ~~~~~~~~~~~-~~~~~~~~~~fpll~D~~~~ia~~ygv~~~~~g~~~r~~fiID~~G~i~~~~~~~~~~~r~~~e~l~~  159 (199)
T PTZ00253         81 EYAHLQWTLQE-RKKGGLGTMAIPMLADKTKSIARSYGVLEEEQGVAYRGLFIIDPKGMLRQITVNDMPVGRNVEEVLRL  159 (199)
T ss_pred             HHHHHHHHhCh-HhhCCccccccceEECcHhHHHHHcCCcccCCCceEEEEEEECCCCEEEEEEecCCCCCCCHHHHHHH
Confidence            46799997532 22234456899999999999999999987666778999999999999999999988889999999999


Q ss_pred             HHhhhhhhhcCCcccC
Q psy13875         85 VKAFQFVDKHGEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~~~~~~~  100 (105)
                      |+++|...+++++|+.
T Consensus       160 l~a~~~~~~~~~~cp~  175 (199)
T PTZ00253        160 LEAFQFVEKHGEVCPA  175 (199)
T ss_pred             HHhhhhHHhcCCEeCC
Confidence            9999999989988875

>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=2.3e-18  Score=119.48  Aligned_cols=76  Identities=32%  Similarity=0.480  Sum_probs=66.9

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC--C----ccceeEEEECCCCCEEEEEeccCCCCCCH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA--G----IPLRGLFIIDTKGVLRQITVNDLPVGRSV   78 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~--G----~~~ratfiID~~G~V~~~~~~~~~~~~~~   78 (105)
                      +++|++|+++.        +|+||||||.+++|+++||++.+..  |    ...|+|||||++|+|+++| ...+...|+
T Consensus        75 ~~~~~~F~~k~--------~L~f~LLSD~~~~v~~~ygv~~~k~~~gk~~~~~~R~TfvId~dG~I~~~~-~~v~~~~h~  145 (157)
T COG1225          75 PKSHKKFAEKH--------GLTFPLLSDEDGEVAEAYGVWGEKKMYGKEYMGIERSTFVIDPDGKIRYVW-RKVKVKGHA  145 (157)
T ss_pred             HHHHHHHHHHh--------CCCceeeECCcHHHHHHhCcccccccCccccccccceEEEECCCCeEEEEe-cCCCCcccH
Confidence            68999999883        8999999999999999999987643  1    3799999999999999999 467778899


Q ss_pred             HHHHHHHHhhh
Q psy13875         79 EEVLRLVKAFQ   89 (105)
Q Consensus        79 ~eil~~l~~l~   89 (105)
                      ++++++|+++.
T Consensus       146 ~~vl~~l~~l~  156 (157)
T COG1225         146 DEVLAALKKLA  156 (157)
T ss_pred             HHHHHHHHHhc
Confidence            99999998874

>TIGR03137 AhpC peroxiredoxin

Probab=99.76  E-value=5.1e-18  Score=119.90  Aligned_cols=92  Identities=36%  Similarity=0.689  Sum_probs=79.4

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      +++|++|++...    .+.+++||++||++++++++||+..+..|++.|+|||||++|+|+++++.....+++++++++.
T Consensus        76 ~~~~~~~~~~~~----~~~~l~fpllsD~~~~~a~~~gv~~~~~g~~~p~tfiID~~G~I~~~~~~~~~~~~~~~~ll~~  151 (187)
T TIGR03137        76 HFVHKAWHDTSE----AIGKITYPMLGDPTGVLTRNFGVLIEEAGLADRGTFVIDPEGVIQAVEITDNGIGRDASELLRK  151 (187)
T ss_pred             HHHHHHHHhhhh----hccCcceeEEECCccHHHHHhCCcccCCCceeeEEEEECCCCEEEEEEEeCCCCCCCHHHHHHH
Confidence            468999996532    1347899999999999999999986655777899999999999999999777777899999999


Q ss_pred             HHhhhhhhhc-CCcccC
Q psy13875         85 VKAFQFVDKH-GEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~-~~~~~~  100 (105)
                      |++++..+++ |+.||+
T Consensus       152 l~~~~~~~~~~~~~~~~  168 (187)
T TIGR03137       152 IKAAQYVAAHPGEVCPA  168 (187)
T ss_pred             HHHhhhHHhcCCeeeCC
Confidence            9999999999 788875

This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.

>KOG0854|consensus

Probab=99.71  E-value=4.5e-17  Score=114.91  Aligned_cols=95  Identities=27%  Similarity=0.514  Sum_probs=82.4

Q ss_pred             hHHHHHHHHhhhcCCCCC--CCCCceEEeeCcchHHhhhCCcccc------CCccceeEEEECCCCCEEEEEeccCCCCC
Q psy13875          5 DEGDEVWLEDVKQGDGGL--GDLKYPLLADFKKEIATSYGVLIES------AGIPLRGLFIIDTKGVLRQITVNDLPVGR   76 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~--~~l~fpllsD~~~~vak~ygv~~~~------~G~~~ratfiID~~G~V~~~~~~~~~~~~   76 (105)
                      ++||++|.+++... +..  +.++||++.|++.+++-.||+..++      .|.+.|+.||||++.+|+..+.++.+++|
T Consensus        77 vesH~~Wi~DIks~-~~~~~~~~~yPIIaD~~rela~~l~MlD~~e~~~~~~~~T~Ravfvi~pdkKirLs~lYP~ttGR  155 (224)
T KOG0854|consen   77 VESHKDWIKDIKSY-AKVKNHSVPYPIIADPNRELAFLLNMLDPEEKKNIGDGKTVRAVFVIDPDKKIRLSFLYPSTTGR  155 (224)
T ss_pred             HHHHHHHHHHHHHH-HhccCCCCCCCeecCCchhhhhhhcccCHhHcCCCCCCceEEEEEEECCCceEEEEEEcccccCc
Confidence            68999999887322 211  2489999999999999999998753      25789999999999999999999999999


Q ss_pred             CHHHHHHHHHhhhhhhhcCCcccC
Q psy13875         77 SVEEVLRLVKAFQFVDKHGEGSKR  100 (105)
Q Consensus        77 ~~~eil~~l~~l~~~~~~~~~~~~  100 (105)
                      |++|+||.|+.||..++.+++||.
T Consensus       156 N~dEiLRvidsLqlt~~k~VaTP~  179 (224)
T KOG0854|consen  156 NFDEILRVIDSLQLTDKKGVATPV  179 (224)
T ss_pred             CHHHHHHHHHHHhhhccccccccc
Confidence            999999999999998888888875

>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides

Probab=99.70  E-value=2.1e-16  Score=109.95  Aligned_cols=94  Identities=53%  Similarity=0.939  Sum_probs=79.4

Q ss_pred             HHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875          6 EGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV   85 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l   85 (105)
                      +++++|.+.... .+++.+++||+++|.+++++++||+.....|.+.|++||||++|+|++++++..+.+++.+++++.|
T Consensus        75 ~~~~~~~~~~~~-~~~~~~~~f~~l~D~~~~~~~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l  153 (173)
T cd03015          75 FSHLAWRNTPRK-EGGLGKINFPLLADPKKKISRDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVL  153 (173)
T ss_pred             HHHHHHHHhhhh-hCCccCcceeEEECCchhHHHHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHH
Confidence            467789866321 1123468999999999999999999866556778999999999999999998777778999999999


Q ss_pred             HhhhhhhhcCCcccC
Q psy13875         86 KAFQFVDKHGEGSKR  100 (105)
Q Consensus        86 ~~l~~~~~~~~~~~~  100 (105)
                      +.++...++|++||.
T Consensus       154 ~~~~~~~~~~~~~~~  168 (173)
T cd03015         154 DALQFVEEHGEVCPA  168 (173)
T ss_pred             HHhhhhhhcCCCcCC
Confidence            999999999999986

The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric

>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional

Probab=99.49  E-value=1.9e-13  Score=94.94  Aligned_cols=75  Identities=20%  Similarity=0.323  Sum_probs=61.9

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCC-ceEEeeC-cchHHhhhCCcccc---CCccceeEEEECCCCCEEEEEecc-CCCCCCH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLK-YPLLADF-KKEIATSYGVLIES---AGIPLRGLFIIDTKGVLRQITVND-LPVGRSV   78 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~-fpllsD~-~~~vak~ygv~~~~---~G~~~ratfiID~~G~V~~~~~~~-~~~~~~~   78 (105)
                      +++|++|+++.        +++ |+++||. +++++++||+....   .|++.|++||||++|+|++.+++. ....+++
T Consensus        87 ~~~~~~f~~~~--------~~~~~~~lsD~~~~~~~~~~gv~~~~~~~~g~~~r~tfvId~~G~I~~~~~~~~~~~~~~~  158 (167)
T PRK00522         87 PFAQKRFCGAE--------GLENVITLSDFRDHSFGKAYGVAIAEGPLKGLLARAVFVLDENNKVVYSELVPEITNEPDY  158 (167)
T ss_pred             HHHHHHHHHhC--------CCCCceEeecCCccHHHHHhCCeecccccCCceeeEEEEECCCCeEEEEEECCCcCCCCCH
Confidence            57899999772        555 8999995 56999999997543   578899999999999999999854 4556799


Q ss_pred             HHHHHHHHh
Q psy13875         79 EEVLRLVKA   87 (105)
Q Consensus        79 ~eil~~l~~   87 (105)
                      ++++++|++
T Consensus       159 ~~~l~~l~~  167 (167)
T PRK00522        159 DAALAALKA  167 (167)
T ss_pred             HHHHHHhhC
Confidence            999998864

>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol

Probab=99.46  E-value=1.9e-13  Score=94.15  Aligned_cols=63  Identities=22%  Similarity=0.298  Sum_probs=52.2

Q ss_pred             chHHHHHHHHhhhcCCCCCCCC--CceEEeeCcchHHhhhCCccccC--Cc---cceeEEEECCCCCEEEEEeccCCCC
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDL--KYPLLADFKKEIATSYGVLIESA--GI---PLRGLFIIDTKGVLRQITVNDLPVG   75 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l--~fpllsD~~~~vak~ygv~~~~~--G~---~~ratfiID~~G~V~~~~~~~~~~~   75 (105)
                      .+++|++|+++.        ++  +||||||++++++++||+..+..  |+   +.|++|||| +|+|+++++...+.+
T Consensus        75 ~~~~~~~~~~~~--------~~~~~f~lLsD~~~~~~~~ygv~~~~~~~~~~~~~~R~~fiId-~g~I~~~~~~~~~~~  144 (155)
T cd03013          75 DPFVMKAWGKAL--------GAKDKIRFLADGNGEFTKALGLTLDLSAAGGGIRSKRYALIVD-DGKVKYLFVEEDPGD  144 (155)
T ss_pred             CHHHHHHHHHhh--------CCCCcEEEEECCCHHHHHHcCCCccccccCCcceeeeEEEEEC-CCEEEEEEEecCCCC
Confidence            478999999773        44  89999999999999999986543  43   689999999 799999999765433

The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases

>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx)

Probab=99.35  E-value=4.7e-12  Score=84.84  Aligned_cols=71  Identities=24%  Similarity=0.430  Sum_probs=58.6

Q ss_pred             hHHHHHHHHhhhcCCCCCCC-CCceEEeeCc-chHHhhhCCccccCCccceeEEEECCCCCEEEEEecc-CCCCCCHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGD-LKYPLLADFK-KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVND-LPVGRSVEEV   81 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~-l~fpllsD~~-~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~-~~~~~~~~ei   81 (105)
                      ++++++|.++.        + .+||+++|.. ++++++||+..+..|++.|++||||++|+|++++++. ....++.+++
T Consensus        69 ~~~~~~~~~~~--------~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~~~~~~iid~~G~I~~~~~~~~~~~~~~~~~~  140 (143)
T cd03014          69 PFAQKRWCGAE--------GVDNVTTLSDFRDHSFGKAYGVLIKDLGLLARAVFVIDENGKVIYVELVPEITDEPDYEAA  140 (143)
T ss_pred             HHHHHHHHHhc--------CCCCceEeecCcccHHHHHhCCeeccCCccceEEEEEcCCCeEEEEEECCCcccCCCHHHH
Confidence            56789999763        3 3799999996 9999999998765677789999999999999999975 3445788877


Q ss_pred             HH
Q psy13875         82 LR   83 (105)
Q Consensus        82 l~   83 (105)
                      ++
T Consensus       141 ~~  142 (143)
T cd03014         141 LA  142 (143)
T ss_pred             hh
Confidence            64

Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based

>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE

Probab=99.27  E-value=2.6e-11  Score=81.39  Aligned_cols=75  Identities=33%  Similarity=0.552  Sum_probs=61.4

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCc--chHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFK--KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVL   82 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~--~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil   82 (105)
                      ++.+++|+++.        +++||+++|.+  +++++.||+.....|++.|++||||++|+|++.+.+.....++..++.
T Consensus        73 ~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~g~~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~  144 (149)
T cd03018          73 PFSLRAWAEEN--------GLTFPLLSDFWPHGEVAKAYGVFDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYD  144 (149)
T ss_pred             HHHHHHHHHhc--------CCCceEecCCCchhHHHHHhCCccccCCCccceEEEECCCCEEEEEEecCCcccccchhHH
Confidence            45789999762        67999999988  999999999865446677899999999999999998775566777777


Q ss_pred             HHHHh
Q psy13875         83 RLVKA   87 (105)
Q Consensus        83 ~~l~~   87 (105)
                      +.|++
T Consensus       145 ~~~~~  149 (149)
T cd03018         145 EALDA  149 (149)
T ss_pred             HHhhC
Confidence            76653

AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.

>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed

Probab=99.18  E-value=1.6e-10  Score=78.50  Aligned_cols=73  Identities=26%  Similarity=0.311  Sum_probs=57.2

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC--C----ccceeEEEECCCCCEEEEEeccCCCCCCH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA--G----IPLRGLFIIDTKGVLRQITVNDLPVGRSV   78 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~--G----~~~ratfiID~~G~V~~~~~~~~~~~~~~   78 (105)
                      ++++++|+++.        +++||+++|+++.++++||+.....  |    ...|++||||++|+|++++.+. ....+.
T Consensus        75 ~~~~~~~~~~~--------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~-~~~~~~  145 (154)
T PRK09437         75 PEKLSRFAEKE--------LLNFTLLSDEDHQVAEQFGVWGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKF-KTSNHH  145 (154)
T ss_pred             HHHHHHHHHHh--------CCCCeEEECCCchHHHHhCCCcccccccccccCcceEEEEECCCCEEEEEEcCC-CcchhH
Confidence            46788999762        6799999999999999999874321  1    1248999999999999999864 334578


Q ss_pred             HHHHHHHH
Q psy13875         79 EEVLRLVK   86 (105)
Q Consensus        79 ~eil~~l~   86 (105)
                      ++++++++
T Consensus       146 ~~~~~~~~  153 (154)
T PRK09437        146 DVVLDYLK  153 (154)
T ss_pred             HHHHHHHh
Confidence            88888775

>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides

Probab=99.16  E-value=1.8e-10  Score=76.42  Aligned_cols=70  Identities=30%  Similarity=0.352  Sum_probs=56.2

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCcccc---CCccceeEEEECCCCCEEEEEeccCCCCCCHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIES---AGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEV   81 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~---~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~ei   81 (105)
                      ++..++|+++.        +++||+++|.+++++++||+....   .+...|++||||++|+|++++.+.. .+++.+++
T Consensus        68 ~~~~~~~~~~~--------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~p~~~lid~~G~v~~~~~g~~-~~~~~~~~  138 (140)
T cd03017          68 VESHAKFAEKY--------GLPFPLLSDPDGKLAKAYGVWGEKKKKYMGIERSTFLIDPDGKIVKVWRKVK-PKGHAEEV  138 (140)
T ss_pred             HHHHHHHHHHh--------CCCceEEECCccHHHHHhCCccccccccCCcceeEEEECCCCEEEEEEecCC-ccchHHHH
Confidence            45678888762        679999999999999999988531   1335699999999999999998755 57788887


Q ss_pred             HH
Q psy13875         82 LR   83 (105)
Q Consensus        82 l~   83 (105)
                      ++
T Consensus       139 ~~  140 (140)
T cd03017         139 LE  140 (140)
T ss_pred             hC
Confidence            63

The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w

>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified

Probab=99.06  E-value=8.9e-10  Score=72.94  Aligned_cols=68  Identities=44%  Similarity=0.797  Sum_probs=53.4

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC---CccceeEEEECCCCCEEEEEeccCCCCCCHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA---GIPLRGLFIIDTKGVLRQITVNDLPVGRSVE   79 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~---G~~~ratfiID~~G~V~~~~~~~~~~~~~~~   79 (105)
                      ++..++|+++.       ..++||+++|+++.++++||+.....   +...|++||||++|+|++.+.+........+
T Consensus        67 ~~~~~~~~~~~-------~~~~~~~l~D~~~~~~~~~g~~~~~~~~~~~~~p~~~lid~~g~i~~~~~~~~~~~~~~~  137 (140)
T cd02971          67 PFSHKAWAEKE-------GGLNFPLLSDPDGEFAKAYGVLIEKSAGGGLAARATFIIDPDGKIRYVEVEPLPTGRNAE  137 (140)
T ss_pred             HHHHHHHHhcc-------cCCCceEEECCChHHHHHcCCccccccccCceeEEEEEECCCCcEEEEEecCCCCCcChH
Confidence            45678899662       16799999999999999999985432   3468999999999999999998765343343

PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a

>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain

Probab=99.00  E-value=1.3e-09  Score=71.93  Aligned_cols=53  Identities=19%  Similarity=0.282  Sum_probs=46.4

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEecc
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVND   71 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~   71 (105)
                      ++..++|+++        .+++||+++|.++.+++.||+.    +  .|++||||++|+|++++.|+
T Consensus        73 ~~~~~~~~~~--------~~~~~p~~~D~~~~~~~~~~v~----~--~P~~~vid~~G~v~~~~~G~  125 (126)
T cd03012          73 LANVKSAVLR--------YGITYPVANDNDYATWRAYGNQ----Y--WPALYLIDPTGNVRHVHFGE  125 (126)
T ss_pred             HHHHHHHHHH--------cCCCCCEEECCchHHHHHhCCC----c--CCeEEEECCCCcEEEEEecC
Confidence            5577888877        2789999999999999999986    3  59999999999999999874

Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.

>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs

Probab=99.00  E-value=1.2e-09  Score=72.76  Aligned_cols=57  Identities=25%  Similarity=0.438  Sum_probs=46.4

Q ss_pred             HHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCcccc-----------------------CCccceeEEEECCCC
Q psy13875          6 EGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIES-----------------------AGIPLRGLFIIDTKG   62 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~-----------------------~G~~~ratfiID~~G   62 (105)
                      +.+++|+++        .+++||+++|+++.++++||+....                       .+...|++||||++|
T Consensus        69 ~~~~~~~~~--------~~~~~p~~~D~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~fvid~~g  140 (149)
T cd02970          69 EKLEAFDKG--------KFLPFPVYADPDRKLYRALGLVRSLPWSNTPRALWKNAAIGFRGNDEGDGLQLPGVFVIGPDG  140 (149)
T ss_pred             HHHHHHHHh--------cCCCCeEEECCchhHHHHcCceecCcHHHHHHHHhhCcccccccCCCCcccccceEEEECCCC
Confidence            456678865        2789999999999999999996321                       124699999999999


Q ss_pred             CEEEEEec
Q psy13875         63 VLRQITVN   70 (105)
Q Consensus        63 ~V~~~~~~   70 (105)
                      +|++.+++
T Consensus       141 ~i~~~~~~  148 (149)
T cd02970         141 TILFAHVD  148 (149)
T ss_pred             eEEEEecC
Confidence            99999975

Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.

>KOG0855|consensus

Probab=99.00  E-value=1.8e-09  Score=75.96  Aligned_cols=75  Identities=31%  Similarity=0.498  Sum_probs=64.3

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC-CccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA-GIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~-G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      ..||++|+.+        .+++|.||||+.+++.+.+|+..... |++.|++||.|+.|....+....+.++.++++.+.
T Consensus       135 s~sqKaF~sK--------qnlPYhLLSDpk~e~ik~lGa~k~p~gg~~~Rsh~if~kg~~k~~ik~~~isPevsvd~a~k  206 (211)
T KOG0855|consen  135 SASQKAFASK--------QNLPYHLLSDPKNEVIKDLGAPKDPFGGLPGRSHYIFDKGGVKQLIKNNQISPEVSVDEALK  206 (211)
T ss_pred             hHHHHHhhhh--------ccCCeeeecCcchhHHHHhCCCCCCCCCcccceEEEEecCCeEEEEEecccCccccHHHHHH
Confidence            4699999976        39999999999999999999987443 67999999999998888887767777889999998


Q ss_pred             HHHh
Q psy13875         84 LVKA   87 (105)
Q Consensus        84 ~l~~   87 (105)
                      .|.+
T Consensus       207 ~~~~  210 (211)
T KOG0855|consen  207 FLKA  210 (211)
T ss_pred             HHhc
Confidence            8754

>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells

Probab=98.99  E-value=1.6e-09  Score=70.26  Aligned_cols=55  Identities=31%  Similarity=0.559  Sum_probs=47.1

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEE
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQI   67 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~   67 (105)
                      ++.+++|.++.        +++||+++|.++.++++||+.........|++||||++|+|+|+
T Consensus        70 ~~~~~~~~~~~--------~~~~~~~~D~~~~~~~~~~~~~~~~~~~~p~~~lid~~g~I~~~  124 (124)
T PF00578_consen   70 PEEIKQFLEEY--------GLPFPVLSDPDGELAKAFGIEDEKDTLALPAVFLIDPDGKIRYA  124 (124)
T ss_dssp             HHHHHHHHHHH--------TCSSEEEEETTSHHHHHTTCEETTTSEESEEEEEEETTSBEEEE
T ss_pred             ccchhhhhhhh--------ccccccccCcchHHHHHcCCccccCCceEeEEEEECCCCEEEeC
Confidence            45789999874        68999999999999999999865433468999999999999985

Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....

>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=9.7e-10  Score=75.80  Aligned_cols=61  Identities=23%  Similarity=0.457  Sum_probs=52.0

Q ss_pred             CchHHHHHHHHhhhcCCCCCCCCCceEEeeCc-chHHhhhCCccccC---CccceeEEEECCCCCEEEEEec
Q psy13875          3 FVDEGDEVWLEDVKQGDGGLGDLKYPLLADFK-KEIATSYGVLIESA---GIPLRGLFIIDTKGVLRQITVN   70 (105)
Q Consensus         3 ~~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~-~~vak~ygv~~~~~---G~~~ratfiID~~G~V~~~~~~   70 (105)
                      -||++|++||..     .|+.  +...|||.. .++.++||+...+.   |+..|+.|++|.+|+|.|..+-
T Consensus        85 DLPFAq~RfC~a-----eGi~--nv~~lSd~r~~~Fge~yGv~I~egpL~gLlARaV~V~De~g~V~y~elv  149 (158)
T COG2077          85 DLPFAQKRFCGA-----EGIE--NVITLSDFRDRAFGENYGVLINEGPLAGLLARAVFVLDENGKVTYSELV  149 (158)
T ss_pred             CChhHHhhhhhh-----cCcc--cceEhhhhhhhhhhHhhCEEeccccccCeeeeEEEEEcCCCcEEEEEcc
Confidence            489999999977     4565  478899974 67999999998654   7899999999999999999874

>PRK15412 thiol:disulfide interchange protein DsbE; Provisional

Probab=98.87  E-value=1.5e-08  Score=71.30  Aligned_cols=66  Identities=26%  Similarity=0.407  Sum_probs=51.8

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceE-EeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPL-LADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpl-lsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      .+.+++|.++.        +++||+ ++|.++.+++.||+.    |  .|+|||||++|+|++.+.|.+    +.+++.+
T Consensus       109 ~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~gv~----~--~P~t~vid~~G~i~~~~~G~~----~~~~l~~  170 (185)
T PRK15412        109 RQKAISWLKEL--------GNPYALSLFDGDGMLGLDLGVY----G--APETFLIDGNGIIRYRHAGDL----NPRVWES  170 (185)
T ss_pred             HHHHHHHHHHc--------CCCCceEEEcCCccHHHhcCCC----c--CCeEEEECCCceEEEEEecCC----CHHHHHH
Confidence            35688899762        678994 899999999999987    4  699999999999999999866    3444444


Q ss_pred             HHHhh
Q psy13875         84 LVKAF   88 (105)
Q Consensus        84 ~l~~l   88 (105)
                      .|+.+
T Consensus       171 ~i~~~  175 (185)
T PRK15412        171 EIKPL  175 (185)
T ss_pred             HHHHH
Confidence            45444

>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins

Probab=98.84  E-value=1.3e-08  Score=68.13  Aligned_cols=58  Identities=26%  Similarity=0.421  Sum_probs=47.0

Q ss_pred             HHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCcccc---CCccceeEEEECCCCCEEEEEeccCC
Q psy13875          8 DEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIES---AGIPLRGLFIIDTKGVLRQITVNDLP   73 (105)
Q Consensus         8 h~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~---~G~~~ratfiID~~G~V~~~~~~~~~   73 (105)
                      .++|+++        .+++||+++|.++.++++||+....   .|+..|.+||||++|+|++.+.+...
T Consensus        76 ~~~~~~~--------~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~  136 (146)
T PF08534_consen   76 VREFLKK--------YGINFPVLSDPDGALAKALGVTIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDP  136 (146)
T ss_dssp             HHHHHHH--------TTTTSEEEEETTSHHHHHTTCEEECCTTTTSSSSEEEEEETTSBEEEEEESSBT
T ss_pred             HHHHHHh--------hCCCceEEechHHHHHHHhCCccccccccCCeecEEEEEECCCEEEEEEeCCCC
Confidence            5666655        2789999999999999999976322   13468999999999999999998654

Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....

>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily

Probab=98.82  E-value=2.3e-08  Score=69.57  Aligned_cols=64  Identities=20%  Similarity=0.291  Sum_probs=50.9

Q ss_pred             HHHHHHHHhhhcCCCCCCCCCce-EEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          6 EGDEVWLEDVKQGDGGLGDLKYP-LLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l~fp-llsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      +.+++|+++.        +++|| ++.|+++++++.||+.    |  .|++|+||++|+|++.+.|..    +.+++.+.
T Consensus       105 ~~~~~~~~~~--------~~~f~~v~~D~~~~~~~~~~v~----~--~P~~~~id~~G~i~~~~~G~~----~~~~l~~~  166 (173)
T TIGR00385       105 QNALKFLKEL--------GNPYQAILIDPNGKLGLDLGVY----G--APETFLVDGNGVILYRHAGPL----NNEVWTEG  166 (173)
T ss_pred             HHHHHHHHHc--------CCCCceEEECCCCchHHhcCCe----e--CCeEEEEcCCceEEEEEeccC----CHHHHHHH
Confidence            4577888762        67898 5689999999999987    4  699999999999999998754    45556555


Q ss_pred             HHh
Q psy13875         85 VKA   87 (105)
Q Consensus        85 l~~   87 (105)
                      |++
T Consensus       167 l~~  169 (173)
T TIGR00385       167 FLP  169 (173)
T ss_pred             HHH
Confidence            554

Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.

>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs

Probab=98.81  E-value=4.3e-08  Score=67.67  Aligned_cols=74  Identities=19%  Similarity=0.205  Sum_probs=55.4

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCC-----CCCCHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLP-----VGRSVE   79 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~-----~~~~~~   79 (105)
                      ++..++|+++        .+++||+++|.++.+++.||+.      ..|.+||||++|+|++.......     ...+.+
T Consensus        77 ~~~~~~~~~~--------~~~~~~~l~D~~~~~~~~~~v~------~~P~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~  142 (171)
T cd02969          77 PENMKAKAKE--------HGYPFPYLLDETQEVAKAYGAA------CTPDFFLFDPDGKLVYRGRIDDSRPGNDPPVTGR  142 (171)
T ss_pred             HHHHHHHHHH--------CCCCceEEECCchHHHHHcCCC------cCCcEEEECCCCeEEEeecccCCcccccccccHH
Confidence            3455666654        2678999999999999999986      35999999999999988643221     123568


Q ss_pred             HHHHHHHhhhhhh
Q psy13875         80 EVLRLVKAFQFVD   92 (105)
Q Consensus        80 eil~~l~~l~~~~   92 (105)
                      ++.++|+++....
T Consensus       143 ~~~~~i~~~l~~~  155 (171)
T cd02969         143 DLRAALDALLAGK  155 (171)
T ss_pred             HHHHHHHHHHcCC
Confidence            8888888866433

Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.

>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626

Probab=98.78  E-value=1.9e-08  Score=71.63  Aligned_cols=58  Identities=16%  Similarity=0.329  Sum_probs=45.6

Q ss_pred             CCCce---EEeeCcchHHhhhCCccccCCccceeE-EEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYP---LLADFKKEIATSYGVLIESAGIPLRGL-FIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fp---llsD~~~~vak~ygv~~~~~G~~~rat-fiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +..||   ++.|.++.++++||+.    |  .|+| ||||++|+|++.+.|.++.+ ..++++..|+++
T Consensus       121 ~~~~P~~~vllD~~g~v~~~~gv~----~--~P~T~fVIDk~GkVv~~~~G~l~~e-e~e~~~~li~~l  182 (184)
T TIGR01626       121 KKENPWSQVVLDDKGAVKNAWQLN----S--EDSAIIVLDKTGKVKFVKEGALSDS-DIQTVISLVNGL  182 (184)
T ss_pred             cccCCcceEEECCcchHHHhcCCC----C--CCceEEEECCCCcEEEEEeCCCCHH-HHHHHHHHHHHH
Confidence            55777   9999999999999987    3  5788 99999999999999876422 445566666554

This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.

>PRK03147 thiol-disulfide oxidoreductase; Provisional

Probab=98.75  E-value=7.4e-08  Score=65.97  Aligned_cols=65  Identities=20%  Similarity=0.446  Sum_probs=52.7

Q ss_pred             HHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875          6 EGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV   85 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l   85 (105)
                      +.++.|+++.        +++||++.|.++.++++||+.      ..|++||||++|+|++.+.|..    +.+++.+.|
T Consensus       107 ~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~g~i~~~~~g~~----~~~~l~~~l  168 (173)
T PRK03147        107 LAVKNFVNRY--------GLTFPVAIDKGRQVIDAYGVG------PLPTTFLIDKDGKVVKVITGEM----TEEQLEEYL  168 (173)
T ss_pred             HHHHHHHHHh--------CCCceEEECCcchHHHHcCCC------CcCeEEEECCCCcEEEEEeCCC----CHHHHHHHH
Confidence            5677888662        779999999999999999986      3699999999999999987754    456666666


Q ss_pred             Hhh
Q psy13875         86 KAF   88 (105)
Q Consensus        86 ~~l   88 (105)
                      +++
T Consensus       169 ~~~  171 (173)
T PRK03147        169 EKI  171 (173)
T ss_pred             HHh
Confidence            654

>PLN02412 probable glutathione peroxidase

Probab=98.74  E-value=4e-08  Score=68.25  Aligned_cols=72  Identities=15%  Similarity=0.152  Sum_probs=51.4

Q ss_pred             HHHHHHHHhhhcCCCCCCCCCceEEee--Ccc-hHHhhhCCccccC----C--c-cceeEEEECCCCCEEEEEeccCCCC
Q psy13875          6 EGDEVWLEDVKQGDGGLGDLKYPLLAD--FKK-EIATSYGVLIESA----G--I-PLRGLFIIDTKGVLRQITVNDLPVG   75 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l~fpllsD--~~~-~vak~ygv~~~~~----G--~-~~ratfiID~~G~V~~~~~~~~~~~   75 (105)
                      +.++.|+++        .+++||+++|  .++ .+++.|+++..+.    |  + ..|+|||||++|+|++++.+..   
T Consensus        83 ~~~~~~~~~--------~~~~fpvl~~~d~~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~g~~---  151 (167)
T PLN02412         83 EIQQTVCTR--------FKAEFPIFDKVDVNGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYAPTT---  151 (167)
T ss_pred             HHHHHHHHc--------cCCCCceEeEEeeCCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEECCCC---
Confidence            446777765        2789999984  664 8888887543211    1  2 2699999999999999998765   


Q ss_pred             CCHHHHHHHHHhhh
Q psy13875         76 RSVEEVLRLVKAFQ   89 (105)
Q Consensus        76 ~~~~eil~~l~~l~   89 (105)
                       +.+++.+.|+++.
T Consensus       152 -~~~~l~~~i~~~l  164 (167)
T PLN02412        152 -SPLKIEKDIQNLL  164 (167)
T ss_pred             -CHHHHHHHHHHHH
Confidence             4566777776653

>TIGR02540 gpx7 putative glutathione peroxidase Gpx7

Probab=98.70  E-value=3.4e-08  Score=67.18  Aligned_cols=73  Identities=15%  Similarity=0.281  Sum_probs=47.6

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeC---cchHHhhhCCccccC-Ccc--ceeEEEECCCCCEEEEEeccCCCCCCH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADF---KKEIATSYGVLIESA-GIP--LRGLFIIDTKGVLRQITVNDLPVGRSV   78 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~---~~~vak~ygv~~~~~-G~~--~ratfiID~~G~V~~~~~~~~~~~~~~   78 (105)
                      ++.+++|+++.       .+++||+++|.   +.....+|+...... +++  .|++||||++|+|++.+.+..    +.
T Consensus        74 ~~~~~~f~~~~-------~~~~fp~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~~~tflID~~G~v~~~~~g~~----~~  142 (153)
T TIGR02540        74 SKEIESFARRN-------YGVTFPMFSKIKILGSEAEPAFRFLVDSSKKEPRWNFWKYLVNPEGQVVKFWRPEE----PV  142 (153)
T ss_pred             HHHHHHHHHHh-------cCCCCCccceEecCCCCCCcHHHHHHhcCCCCCCCccEEEEEcCCCcEEEEECCCC----CH
Confidence            46799999641       27899999983   334444443221111 221  345999999999999998754    46


Q ss_pred             HHHHHHHHhh
Q psy13875         79 EEVLRLVKAF   88 (105)
Q Consensus        79 ~eil~~l~~l   88 (105)
                      +++.+.|++|
T Consensus       143 ~~l~~~i~~l  152 (153)
T TIGR02540       143 EEIRPEITAL  152 (153)
T ss_pred             HHHHHHHHHh
Confidence            6777777654

This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.

>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif

Probab=98.64  E-value=1.2e-07  Score=62.09  Aligned_cols=55  Identities=27%  Similarity=0.448  Sum_probs=45.6

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCce-EEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCC
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYP-LLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLP   73 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fp-llsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~   73 (105)
                      .+.+++|+++.        +++|+ +++|.++.+++.||+.    +  .|++||||++|+|++.+.|..+
T Consensus        67 ~~~~~~~~~~~--------~~~~~~~~~D~~~~~~~~~~v~----~--~P~~~~ld~~G~v~~~~~G~~~  122 (127)
T cd03010          67 PENALAWLARH--------GNPYAAVGFDPDGRVGIDLGVY----G--VPETFLIDGDGIIRYKHVGPLT  122 (127)
T ss_pred             HHHHHHHHHhc--------CCCCceEEECCcchHHHhcCCC----C--CCeEEEECCCceEEEEEeccCC
Confidence            46778888662        56775 6699999999999997    3  6999999999999999988653

Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.

>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate

Probab=98.63  E-value=5.1e-08  Score=66.35  Aligned_cols=61  Identities=21%  Similarity=0.243  Sum_probs=42.6

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeC--cch-HHhhhCCccccC-C------ccceeEEEECCCCCEEEEEeccC
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADF--KKE-IATSYGVLIESA-G------IPLRGLFIIDTKGVLRQITVNDL   72 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~--~~~-vak~ygv~~~~~-G------~~~ratfiID~~G~V~~~~~~~~   72 (105)
                      ++.+++|+++.       .+++||+++|.  ++. +++.|++..... +      ...|++||||++|+|++++.|.+
T Consensus        73 ~~~~~~f~~~~-------~~~~fp~~~d~d~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ttflId~~G~i~~~~~G~~  143 (152)
T cd00340          73 NEEIKEFCETN-------YGVTFPMFAKIDVNGENAHPLYKYLKEEAPGLLGKDIKWNFTKFLVDRDGEVVKRFAPTT  143 (152)
T ss_pred             HHHHHHHHHHh-------cCCCceeeeeEeccCCCCChHHHHHHhcCCCCCCCccccccEEEEECCCCcEEEEECCCC
Confidence            46789999651       16899999975  454 567777431100 0      01458999999999999999865

GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.

>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif

Probab=98.54  E-value=5.4e-07  Score=58.46  Aligned_cols=53  Identities=19%  Similarity=0.348  Sum_probs=45.3

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccC
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDL   72 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~   72 (105)
                      .+.+++|.++.        +++||+++|.++++++.|++.      ..|++||||++| |+++..|..
T Consensus        61 ~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~i~------~~P~~~vid~~g-i~~~~~g~~  113 (123)
T cd03011          61 DGAVARFMQKK--------GYGFPVINDPDGVISARWGVS------VTPAIVIVDPGG-IVFVTTGVT  113 (123)
T ss_pred             HHHHHHHHHHc--------CCCccEEECCCcHHHHhCCCC------cccEEEEEcCCC-eEEEEeccC
Confidence            46788888762        679999999999999999987      369999999999 999888644

The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.

>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD

Probab=98.46  E-value=4.6e-07  Score=64.06  Aligned_cols=65  Identities=17%  Similarity=0.189  Sum_probs=47.1

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++.|++|+++.        +++|+.+. .++++++.||+.    +  .|.+||||++|+|++.  +......++++++++
T Consensus       115 ~~~~~~~~~~~--------~~~~~~~~-~~~~i~~~y~v~----~--~P~~~lID~~G~I~~~--g~~~~~~~le~ll~~  177 (189)
T TIGR02661       115 PAEHRRFLKDH--------ELGGERYV-VSAEIGMAFQVG----K--IPYGVLLDQDGKIRAK--GLTNTREHLESLLEA  177 (189)
T ss_pred             HHHHHHHHHhc--------CCCcceee-chhHHHHhccCC----c--cceEEEECCCCeEEEc--cCCCCHHHHHHHHHH
Confidence            56889999772        66777654 568999999986    3  6999999999999985  333333456666655


Q ss_pred             HH
Q psy13875         85 VK   86 (105)
Q Consensus        85 l~   86 (105)
                      ++
T Consensus       178 l~  179 (189)
T TIGR02661       178 DR  179 (189)
T ss_pred             HH
Confidence            53

This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.

>PTZ00056 glutathione peroxidase; Provisional

Probab=98.41  E-value=1.3e-06  Score=62.38  Aligned_cols=73  Identities=11%  Similarity=0.091  Sum_probs=46.6

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeC--cc----h--------HHhhhCCccccCCcc-ceeEEEECCCCCEEEEEe
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADF--KK----E--------IATSYGVLIESAGIP-LRGLFIIDTKGVLRQITV   69 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~--~~----~--------vak~ygv~~~~~G~~-~ratfiID~~G~V~~~~~   69 (105)
                      ++.+++|+++.        +++||+++|.  ++    .        +.+.|+......+++ .++|||||++|+|++.+.
T Consensus        91 ~e~~~~f~~~~--------~~~fpvl~d~~v~g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~G~iv~~~~  162 (199)
T PTZ00056         91 TKDIRKFNDKN--------KIKYNFFEPIEVNGENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKSGNVVAYFS  162 (199)
T ss_pred             HHHHHHHHHHc--------CCCceeeeeeeccCCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCCCcEEEEeC
Confidence            46889999762        7899999973  22    2        233444321111111 258999999999999887


Q ss_pred             ccCCCCCCHHHHHHHHHhhh
Q psy13875         70 NDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        70 ~~~~~~~~~~eil~~l~~l~   89 (105)
                      +..    +.+++.+.|+.+-
T Consensus       163 g~~----~~~~l~~~I~~ll  178 (199)
T PTZ00056        163 PRT----EPLELEKKIAELL  178 (199)
T ss_pred             CCC----CHHHHHHHHHHHH
Confidence            644    4556666666554

>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold

Probab=98.36  E-value=1.3e-06  Score=57.91  Aligned_cols=57  Identities=16%  Similarity=0.232  Sum_probs=44.4

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCc---chHHhhhCCccccC-------Cc-cceeEEEECCCCCEEEEEe
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFK---KEIATSYGVLIESA-------GI-PLRGLFIIDTKGVLRQITV   69 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~---~~vak~ygv~~~~~-------G~-~~ratfiID~~G~V~~~~~   69 (105)
                      ++.+++|+++.        +.+|++|+|..   +.+++.||+.....       ++ ..|++||||++|+|++++.
T Consensus        74 ~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~  141 (142)
T cd02968          74 PEVLKAYAKAF--------GPGWIGLTGTPEEIEALAKAFGVYYEKVPEDDGDYLVDHSAAIYLVDPDGKLVRYYG  141 (142)
T ss_pred             HHHHHHHHHHh--------CCCcEEEECCHHHHHHHHHHhcEEEEecCCCCCceeEeccceEEEECCCCCEEEeec
Confidence            46788888763        57999999975   79999999875321       11 2589999999999999874

Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti

>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins

Probab=98.33  E-value=2.1e-06  Score=53.39  Aligned_cols=51  Identities=31%  Similarity=0.544  Sum_probs=43.3

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEe
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV   69 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~   69 (105)
                      ++..++|.++.        +.+|+++.|.+..+++.||+.      ..|++||+|++|+|++.+.
T Consensus        65 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~------~~P~~~l~d~~g~v~~~~~  115 (116)
T cd02966          65 PAAVKAFLKKY--------GITFPVLLDPDGELAKAYGVR------GLPTTFLIDRDGRIRARHV  115 (116)
T ss_pred             HHHHHHHHHHc--------CCCcceEEcCcchHHHhcCcC------ccceEEEECCCCcEEEEec
Confidence            56677777662        579999999999999999986      3699999999999998875

TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.

>PLN02399 phospholipid hydroperoxide glutathione peroxidase

Probab=98.33  E-value=1.6e-06  Score=63.88  Aligned_cols=72  Identities=14%  Similarity=0.148  Sum_probs=48.4

Q ss_pred             HHHHHHH-HhhhcCCCCCCCCCceEEee--Ccc-hHHhhhCCccccC----C---ccceeEEEECCCCCEEEEEeccCCC
Q psy13875          6 EGDEVWL-EDVKQGDGGLGDLKYPLLAD--FKK-EIATSYGVLIESA----G---IPLRGLFIIDTKGVLRQITVNDLPV   74 (105)
Q Consensus         6 ~sh~~w~-~~~~~~~~~~~~l~fpllsD--~~~-~vak~ygv~~~~~----G---~~~ratfiID~~G~V~~~~~~~~~~   74 (105)
                      +..++|+ ++        .+++||+++|  .++ .++..|++.....    |   ...|+|||||++|+|++++.+..  
T Consensus       152 ~ei~~f~~~~--------~g~~fPvl~~~D~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G~~--  221 (236)
T PLN02399        152 PEIKQFACTR--------FKAEFPIFDKVDVNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPPTT--  221 (236)
T ss_pred             HHHHHHHHHh--------cCCCCccccccCCCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECCCC--
Confidence            4677887 34        2789999965  455 5666666421100    1   12589999999999999998754  


Q ss_pred             CCCHHHHHHHHHhhh
Q psy13875         75 GRSVEEVLRLVKAFQ   89 (105)
Q Consensus        75 ~~~~~eil~~l~~l~   89 (105)
                        +.+++.+.|+++.
T Consensus       222 --~~~~le~~I~~lL  234 (236)
T PLN02399        222 --SPFQIEKDIQKLL  234 (236)
T ss_pred             --CHHHHHHHHHHHh
Confidence              4567777776653

>PTZ00256 glutathione peroxidase; Provisional

Probab=98.31  E-value=1.4e-06  Score=61.26  Aligned_cols=61  Identities=20%  Similarity=0.362  Sum_probs=38.8

Q ss_pred             CCCceEEee--CcchH-HhhhCCcccc-----------CCcc-ceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLLAD--FKKEI-ATSYGVLIES-----------AGIP-LRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpllsD--~~~~v-ak~ygv~~~~-----------~G~~-~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +++||+++|  .++.. ++.|+.+.+.           .+++ .|++||||++|+|++.+.+..    +.+++.+.|+++
T Consensus       105 ~~~fpv~~d~d~~g~~~~~~~~~l~~~~~~~~~~~~~~~~iP~~~~tflID~~G~Iv~~~~g~~----~~~~l~~~I~~l  180 (183)
T PTZ00256        105 NVDFPLFQKIEVNGENTHEIYKYLRRNSELFQNNTNEARQIPWNFAKFLIDGQGKVVKYFSPKV----NPNEMIQDIEKL  180 (183)
T ss_pred             CCCCCCceEEecCCCCCCHHHHHHHhhCCCCcCccccCcccCcceEEEEECCCCCEEEEECCCC----CHHHHHHHHHHH
Confidence            789999977  55544 4555322111           1222 347899999999999998755    344555555544

>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source

Probab=98.08  E-value=1.1e-05  Score=51.64  Aligned_cols=48  Identities=21%  Similarity=0.388  Sum_probs=37.4

Q ss_pred             hHHHHHHHHhhhcCCCCCCCC-CceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEE
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDL-KYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQIT   68 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l-~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~   68 (105)
                      .+.+++|+++.        ++ .||.+.|  +.++++||+.      ..|++||||++|+|++.-
T Consensus        64 ~~~~~~~~~~~--------~~~~~p~~~~--~~~~~~~~~~------~~P~~~vid~~G~v~~~~  112 (114)
T cd02967          64 KAEHQRFLKKH--------GLEAFPYVLS--AELGMAYQVS------KLPYAVLLDEAGVIAAKG  112 (114)
T ss_pred             HHHHHHHHHHh--------CCCCCcEEec--HHHHhhcCCC------CcCeEEEECCCCeEEecc
Confidence            45678888763        55 4888764  5689999986      369999999999999864

mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=98.00  E-value=2.7e-05  Score=63.08  Aligned_cols=51  Identities=25%  Similarity=0.384  Sum_probs=43.6

Q ss_pred             CceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875         26 KYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK   86 (105)
Q Consensus        26 ~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~   86 (105)
                      +||++.|.++++++.||+.      .+|++||||++|+|++...|.+    +.+++.+.|+
T Consensus       120 ~~pV~~D~~~~lak~fgV~------giPTt~IIDkdGkIV~~~~G~~----~~eeL~a~Ie  170 (521)
T PRK14018        120 KLPVLTDNGGTLAQSLNIS------VYPSWAIIGKDGDVQRIVKGSI----SEAQALALIR  170 (521)
T ss_pred             ccceeccccHHHHHHcCCC------CcCeEEEEcCCCeEEEEEeCCC----CHHHHHHHHH
Confidence            6899999999999999987      3799999999999999999865    4566666665

>PRK13728 conjugal transfer protein TrbB; Provisional

Probab=97.88  E-value=6.9e-05  Score=53.29  Aligned_cols=60  Identities=7%  Similarity=0.096  Sum_probs=44.2

Q ss_pred             CCCceEEee-CcchHHhhhCCccccCCccceeEEEECCCCCEEE-EEeccCCCCCCHHHHHHHHHhhhhh
Q psy13875         24 DLKYPLLAD-FKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQ-ITVNDLPVGRSVEEVLRLVKAFQFV   91 (105)
Q Consensus        24 ~l~fpllsD-~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~-~~~~~~~~~~~~~eil~~l~~l~~~   91 (105)
                      .+.||++.| ..+.+.+.||+..    ...|+|||||++|+|++ ++.|.+    +.+++.+.++.+...
T Consensus       112 ~~~fPv~~dd~~~~~~~~~g~~~----~~iPttfLId~~G~i~~~~~~G~~----~~~~L~~~I~~ll~~  173 (181)
T PRK13728        112 DTAFPEALPAPPDVMQTFFPNIP----VATPTTFLVNVNTLEALPLLQGAT----DAAGFMARMDTVLQM  173 (181)
T ss_pred             CCCCceEecCchhHHHHHhCCCC----CCCCeEEEEeCCCcEEEEEEECCC----CHHHHHHHHHHHHhh
Confidence            578999996 5677888998521    13799999999999974 788865    456666666665433

>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors

Probab=97.78  E-value=4.4e-05  Score=52.44  Aligned_cols=49  Identities=20%  Similarity=0.488  Sum_probs=36.1

Q ss_pred             HHHHHHHHhhhcCCCCCCCCCc---eEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEE
Q psy13875          6 EGDEVWLEDVKQGDGGLGDLKY---PLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQIT   68 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l~f---pllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~   68 (105)
                      +..++|.++.        +++|   |+..+..+.++++||+.    |  +|++||||++|+|+...
T Consensus        78 ~~~~~f~~~~--------~~~~~~~p~~~~~~~~l~~~y~v~----~--iPt~vlId~~G~Vv~~~  129 (146)
T cd03008          78 QQQESFLKDM--------PKKWLFLPFEDEFRRELEAQFSVE----E--LPTVVVLKPDGDVLAAN  129 (146)
T ss_pred             HHHHHHHHHC--------CCCceeecccchHHHHHHHHcCCC----C--CCEEEEECCCCcEEeeC
Confidence            3466777652        4444   44455567999999986    4  79999999999999764

RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=97.75  E-value=0.00014  Score=63.18  Aligned_cols=54  Identities=17%  Similarity=0.204  Sum_probs=44.6

Q ss_pred             CCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        24 ~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      +++||++.|.++++.+.||+.    |  .|++||||++|+|++.+.++.    ..+++.+.|++
T Consensus       481 ~i~~pvv~D~~~~~~~~~~V~----~--iPt~ilid~~G~iv~~~~G~~----~~~~l~~~l~~  534 (1057)
T PLN02919        481 NISHPVVNDGDMYLWRELGVS----S--WPTFAVVSPNGKLIAQLSGEG----HRKDLDDLVEA  534 (1057)
T ss_pred             CCCccEEECCchHHHHhcCCC----c--cceEEEECCCCeEEEEEeccc----CHHHHHHHHHH
Confidence            789999999999999999987    4  699999999999999988754    34555555544

>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif

Probab=97.20  E-value=0.0004  Score=45.54  Aligned_cols=39  Identities=13%  Similarity=0.357  Sum_probs=30.2

Q ss_pred             CCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEe
Q psy13875         24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV   69 (105)
Q Consensus        24 ~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~   69 (105)
                      .++|+. +|.+..++++||+.    +  .|++||||++|+|+....
T Consensus        79 ~~~~~~-~~~~~~~~~~~~v~----~--~P~~~lid~~G~i~~~~~  117 (131)
T cd03009          79 AVPFSD-RERRSRLNRTFKIE----G--IPTLIILDADGEVVTTDA  117 (131)
T ss_pred             EcccCC-HHHHHHHHHHcCCC----C--CCEEEEECCCCCEEcccH
Confidence            344544 56668899999987    3  699999999999987654

TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the

>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme

Probab=97.18  E-value=0.0019  Score=41.73  Aligned_cols=56  Identities=23%  Similarity=0.362  Sum_probs=44.1

Q ss_pred             HHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCcccc----------------------CC----------cccee
Q psy13875          7 GDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIES----------------------AG----------IPLRG   54 (105)
Q Consensus         7 sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~----------------------~G----------~~~ra   54 (105)
                      +.++|++.        ...+|||.+|++.++-+++|+....                      .|          .....
T Consensus        26 ~~~~f~~~--------~~~p~~ly~D~~~~lY~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~q~GG   97 (115)
T PF13911_consen   26 GIEKFCEL--------TGFPFPLYVDPERKLYKALGLKRGLKWSLLPPALWSGLSNIVQSAKNGGIPGNKDQGDGWQLGG   97 (115)
T ss_pred             HHHHHHhc--------cCCCCcEEEeCcHHHHHHhCCccccccCCCchHHHHHHHHHHHHHHHcCCCCcccCCCceecCe
Confidence            57889855        2789999999999999999986520                      01          23678


Q ss_pred             EEEECCCCCEEEEEec
Q psy13875         55 LFIIDTKGVLRQITVN   70 (105)
Q Consensus        55 tfiID~~G~V~~~~~~   70 (105)
                      +||+|++|+|++.|..
T Consensus        98 ~fv~d~~g~v~~~hr~  113 (115)
T PF13911_consen   98 TFVFDPGGKVLYEHRD  113 (115)
T ss_pred             EEEEcCCCeEEEEEec
Confidence            9999999999999873

>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB

Probab=96.89  E-value=0.0034  Score=43.32  Aligned_cols=33  Identities=6%  Similarity=0.094  Sum_probs=23.2

Q ss_pred             cceeEEEECCCCCE-EEEEeccCCCCCCHHHHHHHHHh
Q psy13875         51 PLRGLFIIDTKGVL-RQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        51 ~~ratfiID~~G~V-~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      ..|++||||++|++ +.++.|.+    +.+++.+.|+.
T Consensus       118 ~iPTt~LID~~G~~i~~~~~G~~----s~~~l~~~I~~  151 (153)
T TIGR02738       118 VTPATFLVNVNTRKAYPVLQGAV----DEAELANRMDE  151 (153)
T ss_pred             CCCeEEEEeCCCCEEEEEeeccc----CHHHHHHHHHH
Confidence            47999999999886 54677755    45555555544

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.

>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ

Probab=96.82  E-value=0.0019  Score=45.12  Aligned_cols=57  Identities=16%  Similarity=0.373  Sum_probs=43.0

Q ss_pred             CCCce-EEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875         24 DLKYP-LLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK   86 (105)
Q Consensus        24 ~l~fp-llsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~   86 (105)
                      ..++. ++.|.+|.+.++|++..+     .-+.+|+|++|+|++..-|.++. .++++++..|+
T Consensus       101 ~~p~s~~vlD~~G~~~~aW~L~~~-----~SaiiVlDK~G~V~F~k~G~Ls~-~Ev~qVi~Ll~  158 (160)
T PF09695_consen  101 EFPWSQFVLDSNGVVRKAWQLQEE-----SSAIIVLDKQGKVQFVKEGALSP-AEVQQVIALLK  158 (160)
T ss_pred             hCCCcEEEEcCCCceeccccCCCC-----CceEEEEcCCccEEEEECCCCCH-HHHHHHHHHHh
Confidence            44666 679999999999998743     35688999999999999887742 24555555554

>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX

Probab=96.72  E-value=0.0041  Score=40.96  Aligned_cols=30  Identities=13%  Similarity=0.344  Sum_probs=24.7

Q ss_pred             cchHHhhhCCccccCCccceeEEEECCCCCEEEEEe
Q psy13875         34 KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV   69 (105)
Q Consensus        34 ~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~   69 (105)
                      .+.+++.||+.    |  .|++||||++|+|++...
T Consensus        88 ~~~~~~~~~v~----~--iPt~~lid~~G~iv~~~~  117 (132)
T cd02964          88 RELLEKQFKVE----G--IPTLVVLKPDGDVVTTNA  117 (132)
T ss_pred             HHHHHHHcCCC----C--CCEEEEECCCCCEEchhH
Confidence            35788889986    3  699999999999997654

Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.

>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A

Probab=96.62  E-value=0.0015  Score=40.37  Aligned_cols=28  Identities=25%  Similarity=0.525  Sum_probs=22.8

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCE
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVL   64 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V   64 (105)
                      .|.+..+.+.|++.      ..|+.+|||++|+|
T Consensus        68 ~~~~~~l~~~~~i~------~iP~~~lld~~G~I   95 (95)
T PF13905_consen   68 DDNNSELLKKYGIN------GIPTLVLLDPDGKI   95 (95)
T ss_dssp             THHHHHHHHHTT-T------SSSEEEEEETTSBE
T ss_pred             cchHHHHHHHCCCC------cCCEEEEECCCCCC
Confidence            34467899999987      47999999999997

...

>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]

Probab=96.59  E-value=0.012  Score=41.03  Aligned_cols=72  Identities=17%  Similarity=0.299  Sum_probs=52.3

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC--C---ccceeEEEECCCCCEEEEEeccCCCC---C
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA--G---IPLRGLFIIDTKGVLRQITVNDLPVG---R   76 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~--G---~~~ratfiID~~G~V~~~~~~~~~~~---~   76 (105)
                      ++..+||++..    + ..+ +.-+|+|.++++.|+.|+..+..  |   .+.|-+-|| +||+|.+.++.+....   .
T Consensus        84 ~FVm~AWak~~----g-~~~-~I~fi~Dg~geFTk~~Gm~~d~~~~g~G~RS~RYsmvV-~nGvV~~~~iE~p~~~~~vS  156 (165)
T COG0678          84 AFVMNAWAKSQ----G-GEG-NIKFIPDGNGEFTKAMGMLVDKSDLGFGVRSWRYSMVV-ENGVVEKLFIEPPGDPFTVS  156 (165)
T ss_pred             HHHHHHHHHhc----C-CCc-cEEEecCCCchhhhhcCceeecccCCcceeeeeEEEEE-eCCeEEEEEecCCCCceeec
Confidence            46789999774    2 212 68889999999999999987543  3   368889999 7999999998652211   2


Q ss_pred             CHHHHHH
Q psy13875         77 SVEEVLR   83 (105)
Q Consensus        77 ~~~eil~   83 (105)
                      +.+.+|+
T Consensus       157 ~a~~mL~  163 (165)
T COG0678         157 SADTMLA  163 (165)
T ss_pred             CHHHHHh
Confidence            4555554

>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A

Probab=96.37  E-value=0.011  Score=37.42  Aligned_cols=41  Identities=34%  Similarity=0.516  Sum_probs=29.8

Q ss_pred             chHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875         35 KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV   85 (105)
Q Consensus        35 ~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l   85 (105)
                      .++++.||+.    |  .|+.+++|++|+++++..|-.    +.+++++.|
T Consensus        72 ~~l~~~~~v~----g--tPt~~~~d~~G~~v~~~~G~~----~~~~l~~~L  112 (112)
T PF13098_consen   72 KELAQRYGVN----G--TPTIVFLDKDGKIVYRIPGYL----SPEELLKML  112 (112)
T ss_dssp             HHHHHHTT------S--SSEEEECTTTSCEEEEEESS------HHHHHHHH
T ss_pred             HHHHHHcCCC----c--cCEEEEEcCCCCEEEEecCCC----CHHHHHhhC
Confidence            3688888887    4  699999999999999888754    567776654

...

>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus

Probab=96.09  E-value=0.031  Score=37.75  Aligned_cols=56  Identities=14%  Similarity=0.208  Sum_probs=39.0

Q ss_pred             CCCceEE-eeCc--chHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFK--KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~--~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      .+.|-.+ .|.+  ..+++.|++.    |  .|+++++|++|+++..+.|..    ..+++.+.|+++.
T Consensus        52 ~~~~v~v~vd~~~~~~~~~~~~V~----~--iPt~v~~~~~G~~v~~~~G~~----~~~~l~~~l~~l~  110 (142)
T cd02950          52 QVNFVMLNVDNPKWLPEIDRYRVD----G--IPHFVFLDREGNEEGQSIGLQ----PKQVLAQNLDALV  110 (142)
T ss_pred             CeeEEEEEcCCcccHHHHHHcCCC----C--CCEEEEECCCCCEEEEEeCCC----CHHHHHHHHHHHH
Confidence            3455544 2332  3688999987    3  799999999999999998754    3555666665543

It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.

>KOG0541|consensus

Probab=96.06  E-value=0.014  Score=40.82  Aligned_cols=62  Identities=16%  Similarity=0.251  Sum_probs=47.7

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC----C-ccceeEEEECCCCCEEEEEeccCC
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA----G-IPLRGLFIIDTKGVLRQITVNDLP   73 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~----G-~~~ratfiID~~G~V~~~~~~~~~   73 (105)
                      |+..++|.+.+..      +-..-+++|++++..+++|+..+..    | ...|-..++ .||+|.+..+.+..
T Consensus        90 pFv~~aW~k~~g~------~~~V~f~aD~~g~ftk~lgleld~~d~~~g~RS~R~a~vv-engkV~~~nvE~~g  156 (171)
T KOG0541|consen   90 PFVMKAWAKSLGA------NDHVKFVADPAGEFTKSLGLELDLSDKLLGVRSRRYALVV-ENGKVTVVNVEEGG  156 (171)
T ss_pred             HHHHHHHHhhcCc------cceEEEEecCCCceeeeccceeeeccccCccccccEEEEE-eCCeEEEEEeccCC
Confidence            6788999987521      2356789999999999999876532    2 357888888 69999999986543

>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation

Probab=95.94  E-value=0.022  Score=36.99  Aligned_cols=45  Identities=24%  Similarity=0.246  Sum_probs=34.3

Q ss_pred             chHHhhhCCccccCCccceeEEEECCC-CCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         35 KEIATSYGVLIESAGIPLRGLFIIDTK-GVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        35 ~~vak~ygv~~~~~G~~~ratfiID~~-G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ..++++|++.      ..|+++++|++ |+++....|..    ..+++.+.|+.+.
T Consensus        74 ~~l~~~~~v~------~~Pt~~~~~~~gg~~~~~~~G~~----~~~~~~~~l~~~~  119 (125)
T cd02951          74 KELARKYRVR------FTPTVIFLDPEGGKEIARLPGYL----PPDEFLAYLEYVQ  119 (125)
T ss_pred             HHHHHHcCCc------cccEEEEEcCCCCceeEEecCCC----CHHHHHHHHHHHH
Confidence            5788999986      36999999999 89999888754    3556666665543

Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.

>COG3054 Predicted transcriptional regulator [General function prediction only]

Probab=95.87  E-value=0.022  Score=39.87  Aligned_cols=53  Identities=17%  Similarity=0.367  Sum_probs=40.6

Q ss_pred             EEeeCcchHHh-hhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         29 LLADFKKEIAT-SYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        29 llsD~~~~vak-~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++-|.+| +++ +|++..+     .-+.+++|++|+|.++.-|..+ ..++++++..|.+|
T Consensus       129 ~vlD~~g-vak~AWqL~e~-----~SaivVlDk~G~VkfvkeGaLt-~aevQ~Vi~ll~~l  182 (184)
T COG3054         129 FVLDSNG-VAKNAWQLKEE-----SSAVVVLDKDGRVKFVKEGALT-QAEVQQVIDLLQKL  182 (184)
T ss_pred             eEEccch-hhhhhhccccc-----cceEEEEcCCCcEEEEecCCcc-HHHHHHHHHHHHHh
Confidence            5678888 666 9998743     3788999999999999987664 34677777776654

>PRK10606 btuE putative glutathione peroxidase; Provisional

Probab=95.57  E-value=0.067  Score=37.90  Aligned_cols=32  Identities=19%  Similarity=0.185  Sum_probs=22.5

Q ss_pred             EEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         55 LFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        55 tfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      -||||++|+|+.++-..  ..+...++.+.|+++
T Consensus       149 KFLv~~~G~vv~r~~~~--~~p~~~~i~~~i~~~  180 (183)
T PRK10606        149 KFLVGRDGQVIQRFSPD--MTPEDPIVMESIKLA  180 (183)
T ss_pred             EEEECCCCcEEEEECCC--CCCCHHHHHHHHHHH
Confidence            89999999999998532  234444566666554

>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1

Probab=95.31  E-value=0.1  Score=38.70  Aligned_cols=56  Identities=29%  Similarity=0.482  Sum_probs=42.8

Q ss_pred             CCCceEEeeC-cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLLADF-KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpllsD~-~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ...+|++.|. ++...++||..      +.| .||| .+|+|.|.= ++.+.+-+.+|+.++|+++
T Consensus       180 ~~~~pi~vD~mdN~~~~~YgA~------PeR-lyIi-~~gkv~Y~G-g~GP~~y~~~e~r~~L~~~  236 (237)
T PF00837_consen  180 FPQCPIVVDTMDNNFNKAYGAL------PER-LYII-QDGKVVYKG-GPGPFGYSPEELREWLEKY  236 (237)
T ss_pred             CCCCCEEEEccCCHHHHHhCCC------cce-EEEE-ECCEEEEeC-CCCCCcCCHHHHHHHHHhc
Confidence            3578999997 89999999987      345 4555 599998864 3444566899999999875

97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process

>TIGR02740 TraF-like TraF-like protein

Probab=95.07  E-value=0.064  Score=40.16  Aligned_cols=47  Identities=13%  Similarity=0.167  Sum_probs=33.9

Q ss_pred             CcchHHhhhCCccccCCccceeEEEECC-CCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         33 FKKEIATSYGVLIESAGIPLRGLFIIDT-KGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        33 ~~~~vak~ygv~~~~~G~~~ratfiID~-~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      .+..+++.||+.      ..|++||+|+ .|+|..+..|.+    +.+++.+.+..+.
T Consensus       217 ~d~~la~~~gV~------~vPtl~Lv~~~~~~v~~v~~G~~----s~~eL~~~i~~~a  264 (271)
T TIGR02740       217 PDAGQAQQLKIR------TVPAVFLADPDPNQFTPIGFGVM----SADELVDRILLAA  264 (271)
T ss_pred             CCHHHHHHcCCC------cCCeEEEEECCCCEEEEEEeCCC----CHHHHHHHHHHHh
Confidence            345688999986      3799999999 567766666654    5667776665543

This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.

>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle

Probab=94.92  E-value=0.072  Score=35.34  Aligned_cols=53  Identities=6%  Similarity=0.225  Sum_probs=40.1

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|--+ .|.+.++|++||+.    |  +|+.+++ ++|+++. +.|.    ++.+.+.++|++|
T Consensus        65 ~v~~~kVD~d~~~~La~~~~I~----~--iPTl~lf-k~G~~v~-~~G~----~~~~~l~~~l~~~  118 (120)
T cd03065          65 GIGFGLVDSKKDAKVAKKLGLD----E--EDSIYVF-KDDEVIE-YDGE----FAADTLVEFLLDL  118 (120)
T ss_pred             CCEEEEEeCCCCHHHHHHcCCc----c--ccEEEEE-ECCEEEE-eeCC----CCHHHHHHHHHHH
Confidence            4555544 67789999999997    4  6988888 6999876 6653    3678888888765

It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2

>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain

Probab=94.74  E-value=0.084  Score=32.36  Aligned_cols=44  Identities=18%  Similarity=0.300  Sum_probs=33.5

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV   85 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l   85 (105)
                      .|.+..+++.|++.      ..|++++++ +|+++..+.|..    +.+++..+|
T Consensus        52 ~~~~~~l~~~~~i~------~~Pt~~~~~-~g~~~~~~~g~~----~~~~l~~~l   95 (96)
T cd02956          52 CDAQPQIAQQFGVQ------ALPTVYLFA-AGQPVDGFQGAQ----PEEQLRQML   95 (96)
T ss_pred             ccCCHHHHHHcCCC------CCCEEEEEe-CCEEeeeecCCC----CHHHHHHHh
Confidence            56778999999987      369999996 999887776633    556666554

Its gene has been sequenced from several gammaproteobacteria and actinobacteria.

>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD

Probab=94.35  E-value=0.061  Score=33.69  Aligned_cols=42  Identities=12%  Similarity=0.094  Sum_probs=32.3

Q ss_pred             cchHHhhhCCccccCCccceeEEEECC-CCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875         34 KKEIATSYGVLIESAGIPLRGLFIIDT-KGVLRQITVNDLPVGRSVEEVLRLV   85 (105)
Q Consensus        34 ~~~vak~ygv~~~~~G~~~ratfiID~-~G~V~~~~~~~~~~~~~~~eil~~l   85 (105)
                      ...++++||+.      ..|+++++++ +|++...+.|..    +.+++.+.|
T Consensus        61 ~~~~~~~~~i~------~~Pti~~~~~~~g~~~~~~~G~~----~~~~l~~~l  103 (104)
T cd02953          61 ITALLKRFGVF------GPPTYLFYGPGGEPEPLRLPGFL----TADEFLEAL  103 (104)
T ss_pred             HHHHHHHcCCC------CCCEEEEECCCCCCCCccccccc----CHHHHHHHh
Confidence            35788999987      4799999999 899888776643    566666655

It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.

>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain

Probab=94.33  E-value=0.13  Score=32.93  Aligned_cols=54  Identities=13%  Similarity=0.229  Sum_probs=38.2

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|--+ .|.+..++++||+.      ..|+++++ ++|+++....|.    .+.+++.++|++|
T Consensus        57 ~v~~~~vd~d~~~~l~~~~~V~------~~Pt~~i~-~~g~~~~~~~G~----~~~~~l~~~i~~~  111 (111)
T cd02963          57 GVGIATVNAGHERRLARKLGAH------SVPAIVGI-INGQVTFYHDSS----FTKQHVVDFVRKL  111 (111)
T ss_pred             CceEEEEeccccHHHHHHcCCc------cCCEEEEE-ECCEEEEEecCC----CCHHHHHHHHhcC
Confidence            3454433 46677999999987      46999999 599887766653    3567777777654

DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.

>PRK11509 hydrogenase-1 operon protein HyaE; Provisional

Probab=94.10  E-value=0.16  Score=34.43  Aligned_cols=54  Identities=15%  Similarity=0.298  Sum_probs=41.0

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      +.|-.+ .|.+..++.+||+.      .+|+.++. ++|+++....|..    +.+++++.|+++-
T Consensus        70 v~~akVDiD~~~~LA~~fgV~------siPTLl~F-kdGk~v~~i~G~~----~k~~l~~~I~~~L  124 (132)
T PRK11509         70 WQVAIADLEQSEAIGDRFGVF------RFPATLVF-TGGNYRGVLNGIH----PWAELINLMRGLV  124 (132)
T ss_pred             eEEEEEECCCCHHHHHHcCCc------cCCEEEEE-ECCEEEEEEeCcC----CHHHHHHHHHHHh
Confidence            455554 56678999999987      36988888 8999999888743    5688888887653

>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein

Probab=93.91  E-value=0.15  Score=32.04  Aligned_cols=51  Identities=14%  Similarity=0.178  Sum_probs=36.1

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +.|-.+ .| +.+++++|++.    +  .| ||++-++|+++....|.     +.++++++|++|
T Consensus        51 ~~~~~vd~d-~~~~~~~~~v~----~--~P-t~~~~~~g~~~~~~~G~-----~~~~~~~~i~~~  102 (102)
T cd02948          51 LHFATAEAD-TIDTLKRYRGK----C--EP-TFLFYKNGELVAVIRGA-----NAPLLNKTITEL  102 (102)
T ss_pred             EEEEEEeCC-CHHHHHHcCCC----c--Cc-EEEEEECCEEEEEEecC-----ChHHHHHHHhhC
Confidence            445544 34 67889999987    3  57 56666899999888762     567788777654

Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which

>cd02958 UAS UAS family; UAS is a domain of unknown function

Probab=93.82  E-value=0.25  Score=31.64  Aligned_cols=44  Identities=23%  Similarity=0.354  Sum_probs=34.3

Q ss_pred             chHHhhhCCccccCCccceeEEEECC-CCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         35 KEIATSYGVLIESAGIPLRGLFIIDT-KGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        35 ~~vak~ygv~~~~~G~~~ratfiID~-~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ..+++.|++.    +  .|+.++||+ +|+++....|..    +.++++..|+..
T Consensus        66 ~~~~~~~~~~----~--~P~~~~i~~~~g~~l~~~~G~~----~~~~f~~~L~~~  110 (114)
T cd02958          66 QRFLQSYKVD----K--YPHIAIIDPRTGEVLKVWSGNI----TPEDLLSQLIEF  110 (114)
T ss_pred             HHHHHHhCcc----C--CCeEEEEeCccCcEeEEEcCCC----CHHHHHHHHHHH
Confidence            3677888875    3  699999999 899999887754    577787777653

Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),

>PRK09381 trxA thioredoxin; Provisional

Probab=93.48  E-value=0.34  Score=30.37  Aligned_cols=46  Identities=22%  Similarity=0.355  Sum_probs=34.1

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      .|.+..+++.|++.      ..|+.+++ ++|++++...|..    +.+++...|++
T Consensus        61 ~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~i~~  106 (109)
T PRK09381         61 IDQNPGTAPKYGIR------GIPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDA  106 (109)
T ss_pred             CCCChhHHHhCCCC------cCCEEEEE-eCCeEEEEecCCC----CHHHHHHHHHH
Confidence            56667888999987      46988888 7999998887643    45666666654

>TIGR01126 pdi_dom protein disulfide-isomerase domain

Probab=93.21  E-value=0.28  Score=29.88  Aligned_cols=46  Identities=20%  Similarity=0.312  Sum_probs=33.8

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      .|.+..+++.||+.    +  .|+.+++++++. ...+.|.    .+.+++..+|++
T Consensus        55 ~~~~~~~~~~~~i~----~--~P~~~~~~~~~~-~~~~~g~----~~~~~l~~~i~~  100 (102)
T TIGR01126        55 ATAEKDLASRFGVS----G--FPTIKFFPKGKK-PVDYEGG----RDLEAIVEFVNE  100 (102)
T ss_pred             ccchHHHHHhCCCC----c--CCEEEEecCCCc-ceeecCC----CCHHHHHHHHHh
Confidence            55678999999987    3  699999998887 4455543    357777777764

This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.

>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX

Probab=92.97  E-value=0.37  Score=29.73  Aligned_cols=50  Identities=12%  Similarity=0.263  Sum_probs=33.9

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK   86 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~   86 (105)
                      +.|--+ .|.+..++++|++.      ..|+.+++ ++|++ ..+.|    .++.+++.++|+
T Consensus        50 v~~~~vd~~~~~~~~~~~~i~------~~Pt~~~~-~~g~~-~~~~G----~~~~~~l~~~i~  100 (101)
T cd02994          50 INVAKVDVTQEPGLSGRFFVT------ALPTIYHA-KDGVF-RRYQG----PRDKEDLISFIE  100 (101)
T ss_pred             eEEEEEEccCCHhHHHHcCCc------ccCEEEEe-CCCCE-EEecC----CCCHHHHHHHHh
Confidence            343333 45667899999987      36998887 88986 45554    336677777664

TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.

>PRK10996 thioredoxin 2; Provisional

Probab=92.71  E-value=0.38  Score=32.14  Aligned_cols=46  Identities=7%  Similarity=0.234  Sum_probs=34.3

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      .|.+..++++||+.    |  .|+.+++ ++|+++..+.|..    +.+++.++|++
T Consensus        92 ~~~~~~l~~~~~V~----~--~Ptlii~-~~G~~v~~~~G~~----~~e~l~~~l~~  137 (139)
T PRK10996         92 TEAERELSARFRIR----S--IPTIMIF-KNGQVVDMLNGAV----PKAPFDSWLNE  137 (139)
T ss_pred             CCCCHHHHHhcCCC----c--cCEEEEE-ECCEEEEEEcCCC----CHHHHHHHHHH
Confidence            45568999999997    4  5887766 5999998887643    46667777765

>TIGR01068 thioredoxin thioredoxin

Probab=92.69  E-value=0.44  Score=28.78  Aligned_cols=53  Identities=23%  Similarity=0.402  Sum_probs=37.4

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      ++.|-.+ .|.+..+++.||+.      ..|+.+++ ++|++.....|..    +.+++.++|++
T Consensus        46 ~~~~~~vd~~~~~~~~~~~~v~------~~P~~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~   99 (101)
T TIGR01068        46 KVKFVKLNVDENPDIAAKYGIR------SIPTLLLF-KNGKEVDRSVGAL----PKAALKQLINK   99 (101)
T ss_pred             CeEEEEEECCCCHHHHHHcCCC------cCCEEEEE-eCCcEeeeecCCC----CHHHHHHHHHh
Confidence            3555544 45677899999987      47999999 6888877666533    56677776654

Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.

>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex

Probab=92.13  E-value=0.27  Score=36.61  Aligned_cols=56  Identities=16%  Similarity=0.283  Sum_probs=36.3

Q ss_pred             CceEEeeC--cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875         26 KYPLLADF--KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK   86 (105)
Q Consensus        26 ~fpllsD~--~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~   86 (105)
                      .|=++.+.  ...+-+.+|+.+..    .--+||||.+|+||+.-.|..+ ....+.+.+.++
T Consensus       193 ~Yf~~~~~~~~~~iRe~Lgi~N~~----~GYvyLVD~~grIRWagsG~At-~~E~~~L~k~~~  250 (252)
T PF05176_consen  193 RYFIVYRGQLSDDIREALGINNSY----VGYVYLVDPNGRIRWAGSGPAT-PEELESLWKCVK  250 (252)
T ss_pred             eEEEEeCCcccHHHHHHhCCCCCC----cCeEEEECCCCeEEeCccCCCC-HHHHHHHHHHHh
Confidence            45454433  56788899988653    4569999999999998776442 223344444443

A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane

>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems

Probab=92.05  E-value=0.3  Score=33.95  Aligned_cols=59  Identities=20%  Similarity=0.202  Sum_probs=38.3

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEee---CcchHHhhhCCccccC--------C--ccceeEEEECCCCCEEEEEec
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLAD---FKKEIATSYGVLIESA--------G--IPLRGLFIIDTKGVLRQITVN   70 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD---~~~~vak~ygv~~~~~--------G--~~~ratfiID~~G~V~~~~~~   70 (105)
                      +|+..++|++..        +.+|..+.-   .-.++++.|++.....        +  .-.-.+||||++|+|+.++.+
T Consensus       102 Tp~~L~~Y~~~~--------~~~~~~ltg~~~~i~~l~~~~~v~~~~~~~~~~~~~~~i~Hs~~~~Lidp~G~i~~~y~~  173 (174)
T PF02630_consen  102 TPEVLKKYAKKF--------GPDFIGLTGSREEIEELAKQFGVYYEKVPEDKPEGDYQIDHSAFIYLIDPDGRIRAIYNL  173 (174)
T ss_dssp             -HHHHHHHHHCH--------TTTCEEEEEEHHHHHHHHHHCTHCEEEEESSSTTSCEEEEESSEEEEE-TTSEEEEEECS
T ss_pred             CHHHHHHHHHhc--------CCCcceeEeCHHHHHHHHHHHHhhhcccccccCCCCceEecccEEEEEcCCCcEEEEEcc
Confidence            577889999764        334444432   2357888998875310        1  135689999999999998853

In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....

>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants

Probab=92.04  E-value=0.19  Score=30.12  Aligned_cols=51  Identities=10%  Similarity=0.173  Sum_probs=35.1

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++.|-.+ .|.+..+++.||+.      ..|+.++++++|.....+.+.    .+.++++++
T Consensus        49 ~~~~~~v~~~~~~~~~~~~~i~------~~Pt~~~~~~~~~~~~~~~g~----~~~~~i~~~  100 (101)
T cd02961          49 KVVVAKVDCTANNDLCSEYGVR------GYPTIKLFPNGSKEPVKYEGP----RTLESLVEF  100 (101)
T ss_pred             ceEEEEeeccchHHHHHhCCCC------CCCEEEEEcCCCcccccCCCC----cCHHHHHhh
Confidence            4555555 45568999999986      369999999887555544432    367776654

Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies

>PF13728 TraF: F plasmid transfer operon protein

Probab=91.41  E-value=1.2  Score=32.23  Aligned_cols=41  Identities=17%  Similarity=0.221  Sum_probs=28.9

Q ss_pred             cchHHhhhCCccccCCccceeEEEECCCC-CEEEEEeccCCCCCCHHHHHHH
Q psy13875         34 KKEIATSYGVLIESAGIPLRGLFIIDTKG-VLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus        34 ~~~vak~ygv~~~~~G~~~ratfiID~~G-~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      +..+++.||+.      ..|++|||++++ ++.-+-.|.+    +.+++++.
T Consensus       172 ~~g~~~~l~v~------~~Pal~Lv~~~~~~~~pv~~G~~----s~~~L~~r  213 (215)
T PF13728_consen  172 DPGQAKRLGVK------VTPALFLVNPNTKKWYPVSQGFM----SLDELEDR  213 (215)
T ss_pred             CHHHHHHcCCC------cCCEEEEEECCCCeEEEEeeecC----CHHHHHHh
Confidence            56788889886      579999999998 5444444544    56666543

>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains

Probab=91.39  E-value=0.48  Score=28.99  Aligned_cols=42  Identities=10%  Similarity=0.170  Sum_probs=30.1

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      .|.+..+++.|++.      ..|+.+++ ++|+++..+.|..    +.+++.+
T Consensus        59 ~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~G~~----~~~~l~~  100 (102)
T cd03005          59 CTQHRELCSEFQVR------GYPTLLLF-KDGEKVDKYKGTR----DLDSLKE  100 (102)
T ss_pred             CCCChhhHhhcCCC------cCCEEEEE-eCCCeeeEeeCCC----CHHHHHh
Confidence            45567899999986      36988888 7888877777643    4555443

Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.

>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]

Probab=91.25  E-value=0.69  Score=33.27  Aligned_cols=74  Identities=22%  Similarity=0.244  Sum_probs=47.0

Q ss_pred             chHHHHHHHH-hhhcCCCCCCCCCceEEe---eCcchHHhhhCCccc---cC----C--ccceeEEEECCCCCEEEEEec
Q psy13875          4 VDEGDEVWLE-DVKQGDGGLGDLKYPLLA---DFKKEIATSYGVLIE---SA----G--IPLRGLFIIDTKGVLRQITVN   70 (105)
Q Consensus         4 ~~~sh~~w~~-~~~~~~~~~~~l~fplls---D~~~~vak~ygv~~~---~~----G--~~~ratfiID~~G~V~~~~~~   70 (105)
                      +++..+++.+ ..        .-.+--+.   +...+++++|++...   ..    .  .-.-..|+||++|+++..+.+
T Consensus       118 tp~~lk~Y~~~~~--------~~~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid~~G~~~~~~~~  189 (207)
T COG1999         118 TPEVLKKYAELNF--------DPRWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLIDADGRFLGTYDY  189 (207)
T ss_pred             CHHHHHHHhcccC--------CCCeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEECCCCeEEEEecC
Confidence            4566677775 21        22333333   334688999999841   11    1  125678999999999988865


Q ss_pred             cCCCCCCHHHHHHHHHhhh
Q psy13875         71 DLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        71 ~~~~~~~~~eil~~l~~l~   89 (105)
                      ..    ..+++++.|+.+-
T Consensus       190 ~~----~~~~i~~~l~~l~  204 (207)
T COG1999         190 GE----PPEEIAADLKKLL  204 (207)
T ss_pred             CC----ChHHHHHHHHHHh
Confidence            32    3788888887754

>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif

Probab=90.64  E-value=0.9  Score=28.52  Aligned_cols=51  Identities=16%  Similarity=0.192  Sum_probs=33.3

Q ss_pred             CCCceEE-eeCc---chHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875         24 DLKYPLL-ADFK---KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK   86 (105)
Q Consensus        24 ~l~fpll-sD~~---~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~   86 (105)
                      ++.|-.+ .|.+   ..+++.|++.    +  .|+ |++-++|+++..+.|.     +.+++.+.+.
T Consensus        46 ~v~~~~vd~d~~~~~~~l~~~~~V~----~--~Pt-~~~~~~G~~v~~~~G~-----~~~~l~~~~~  100 (103)
T cd02985          46 DVVFLLVNGDENDSTMELCRREKII----E--VPH-FLFYKDGEKIHEEEGI-----GPDELIGDVL  100 (103)
T ss_pred             CCEEEEEECCCChHHHHHHHHcCCC----c--CCE-EEEEeCCeEEEEEeCC-----CHHHHHHHHH
Confidence            4555433 2333   3789999987    4  576 5555999999888763     4566665553

CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.

>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains

Probab=90.44  E-value=0.8  Score=28.25  Aligned_cols=44  Identities=16%  Similarity=0.117  Sum_probs=30.9

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV   85 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l   85 (105)
                      .|.+.++++.||+.      ..|+.++++ +|+++....+..    ..+++.++|
T Consensus        53 ~d~~~~l~~~~~v~------~vPt~~i~~-~g~~v~~~~g~~----~~~~~~~~l   96 (97)
T cd02949          53 IDEDQEIAEAAGIM------GTPTVQFFK-DKELVKEISGVK----MKSEYREFI   96 (97)
T ss_pred             CCCCHHHHHHCCCe------eccEEEEEE-CCeEEEEEeCCc----cHHHHHHhh
Confidence            34567899999986      369999994 899988777632    345554443

The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.

>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional

Probab=90.15  E-value=0.41  Score=39.38  Aligned_cols=45  Identities=18%  Similarity=0.262  Sum_probs=34.3

Q ss_pred             chHHhhhCCccccCCccceeEEEECCCCCEE--EEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         35 KEIATSYGVLIESAGIPLRGLFIIDTKGVLR--QITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        35 ~~vak~ygv~~~~~G~~~ratfiID~~G~V~--~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      .+++++||+.    |  .|+.+++|++|+++  ..+.+.    .+.+++++.|++++
T Consensus       524 ~~l~~~~~v~----g--~Pt~~~~~~~G~~i~~~r~~G~----~~~~~f~~~L~~~~  570 (571)
T PRK00293        524 VALLKHYNVL----G--LPTILFFDAQGQEIPDARVTGF----MDAAAFAAHLRQLQ  570 (571)
T ss_pred             HHHHHHcCCC----C--CCEEEEECCCCCCcccccccCC----CCHHHHHHHHHHhc
Confidence            5788999987    4  69999999999985  344443    36788888887754

>KOG0910|consensus

Probab=90.15  E-value=0.7  Score=32.05  Aligned_cols=53  Identities=19%  Similarity=0.286  Sum_probs=39.5

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      .+.|--+ .|.+.+++..|++.      +.|+++++ ++|..+...+|..    +.+.+...|++
T Consensus        93 ~~k~~kvdtD~~~ela~~Y~I~------avPtvlvf-knGe~~d~~vG~~----~~~~l~~~i~k  146 (150)
T KOG0910|consen   93 KFKLYKVDTDEHPELAEDYEIS------AVPTVLVF-KNGEKVDRFVGAV----PKEQLRSLIKK  146 (150)
T ss_pred             eEEEEEEccccccchHhhccee------eeeEEEEE-ECCEEeeeecccC----CHHHHHHHHHH
Confidence            5565544 77888999999987      57999999 7999998888754    34555555554

>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif

Probab=89.94  E-value=1.8  Score=28.68  Aligned_cols=36  Identities=6%  Similarity=-0.253  Sum_probs=26.0

Q ss_pred             ceeEEEECCCCCEEEEEeccC----CCCCCHHHHHHHHHh
Q psy13875         52 LRGLFIIDTKGVLRQITVNDL----PVGRSVEEVLRLVKA   87 (105)
Q Consensus        52 ~ratfiID~~G~V~~~~~~~~----~~~~~~~eil~~l~~   87 (105)
                      .|+++++|++|++++...+-.    ..+....++++.++.
T Consensus        81 ~Pt~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (124)
T cd02955          81 WPLNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKIRE  120 (124)
T ss_pred             CCEEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHHHH
Confidence            699999999999999886532    123456667766654

The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.

>PF13778 DUF4174: Domain of unknown function (DUF4174)

Probab=89.80  E-value=0.68  Score=30.41  Aligned_cols=45  Identities=11%  Similarity=0.116  Sum_probs=34.6

Q ss_pred             hHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         36 EIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        36 ~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      .+.+.|++..     ..=+.+||++||.|...+-.++    +.+++.+.|+++.
T Consensus        68 ~lr~~l~~~~-----~~f~~vLiGKDG~vK~r~~~p~----~~~~lf~~ID~MP  112 (118)
T PF13778_consen   68 ALRKRLRIPP-----GGFTVVLIGKDGGVKLRWPEPI----DPEELFDTIDAMP  112 (118)
T ss_pred             HHHHHhCCCC-----CceEEEEEeCCCcEEEecCCCC----CHHHHHHHHhCCc
Confidence            5666777652     1357899999999999875444    7999999999875

>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]

Probab=89.72  E-value=0.7  Score=32.34  Aligned_cols=72  Identities=15%  Similarity=0.185  Sum_probs=40.1

Q ss_pred             HHHHHHHHhhhcCCCCCCCCCceEEee--CcchHH-hhhCCccccC-----Ccc---ceeEEEECCCCCEEEEEeccCCC
Q psy13875          6 EGDEVWLEDVKQGDGGLGDLKYPLLAD--FKKEIA-TSYGVLIESA-----GIP---LRGLFIIDTKGVLRQITVNDLPV   74 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l~fpllsD--~~~~va-k~ygv~~~~~-----G~~---~ratfiID~~G~V~~~~~~~~~~   74 (105)
                      +..++||+..       .+++|||++=  -+|+=+ =.|.-+....     |-.   .=+-||||++|+|+.++....  
T Consensus        77 eEI~~fC~~~-------YgVtFp~f~Ki~VnG~~a~PLy~~L~~~~~g~~~~~~IkWNFtKFLvdr~G~VV~Rf~p~t--  147 (162)
T COG0386          77 EEIAKFCQLN-------YGVTFPMFSKIDVNGKNAHPLYKYLKEQKPGKLGGKDIKWNFTKFLVDRDGNVVKRFSPKT--  147 (162)
T ss_pred             HHHHHHHHhc-------cCceeeeeeEEeecCCCCCcHHHHHHhcCCCCccCCccceeeEEEEEcCCCcEEEeeCCCC--
Confidence            4567888652       3889999864  344222 1221111110     111   336799999999999996322  


Q ss_pred             CCCHHHHHHHHHhh
Q psy13875         75 GRSVEEVLRLVKAF   88 (105)
Q Consensus        75 ~~~~~eil~~l~~l   88 (105)
                        ..+++...|+++
T Consensus       148 --~P~d~~~~Ie~l  159 (162)
T COG0386         148 --KPEDIELAIEKL  159 (162)
T ss_pred             --ChhhHHHHHHHH
Confidence              334444455554

>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention

Probab=89.45  E-value=0.56  Score=29.44  Aligned_cols=50  Identities=20%  Similarity=0.300  Sum_probs=34.8

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEE-EEEeccCCCCCCHHHHHHH
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLR-QITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~-~~~~~~~~~~~~~~eil~~   84 (105)
                      .+.|--+ +|.+..++++||+.      ..|+.++. ++|++. ..+.|    .++.+++.++
T Consensus        56 ~~~~~~vd~d~~~~l~~~~~v~------~~Ptl~~~-~~g~~~~~~~~g----~~~~~~l~~f  107 (108)
T cd02996          56 KVVWGKVDCDKESDIADRYRIN------KYPTLKLF-RNGMMMKREYRG----QRSVEALAEF  107 (108)
T ss_pred             cEEEEEEECCCCHHHHHhCCCC------cCCEEEEE-eCCcCcceecCC----CCCHHHHHhh
Confidence            3555433 78889999999997      46999888 788854 33333    4567777655

It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.

>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms

Probab=88.61  E-value=1.7  Score=26.21  Aligned_cols=53  Identities=19%  Similarity=0.394  Sum_probs=37.2

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      ++.|--+ .|.+..+++.|++.      ..|+.+++ .+|+....+.+.    .+.+++.++|++
T Consensus        49 ~v~~~~vd~~~~~~l~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~i~~  102 (103)
T PF00085_consen   49 NVKFAKVDCDENKELCKKYGVK------SVPTIIFF-KNGKEVKRYNGP----RNAESLIEFIEK  102 (103)
T ss_dssp             TSEEEEEETTTSHHHHHHTTCS------SSSEEEEE-ETTEEEEEEESS----SSHHHHHHHHHH
T ss_pred             ccccchhhhhccchhhhccCCC------CCCEEEEE-ECCcEEEEEECC----CCHHHHHHHHHc
Confidence            3444444 34457899999987      36998888 677777767654    378888888764

Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....

>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains

Probab=88.58  E-value=0.76  Score=28.45  Aligned_cols=52  Identities=4%  Similarity=-0.012  Sum_probs=35.2

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      .+.|--+ .|.+.++++.||+.      ..|+.+++...|+....+.|..+   +.+++.++
T Consensus        51 ~~~~~~vd~~~~~~~~~~~~i~------~~Pt~~~~~~g~~~~~~~~G~~~---~~~~l~~~  103 (104)
T cd03004          51 KVKVGSVDCQKYESLCQQANIR------AYPTIRLYPGNASKYHSYNGWHR---DADSILEF  103 (104)
T ss_pred             CcEEEEEECCchHHHHHHcCCC------cccEEEEEcCCCCCceEccCCCC---CHHHHHhh
Confidence            3455333 56678999999987      36999999776687777766431   35666544

This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.

>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein

Probab=88.03  E-value=2.1  Score=28.17  Aligned_cols=51  Identities=8%  Similarity=0.103  Sum_probs=37.2

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCC------CCCHHHHHHHHHhh
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPV------GRSVEEVLRLVKAF   88 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~------~~~~~eil~~l~~l   88 (105)
                      .|.+.++++.||+.      .+|+.+++ ++|+++.+..|..+.      -.+-+++++.++-+
T Consensus        54 vD~~~~la~~~~V~------~iPTf~~f-k~G~~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~  110 (114)
T cd02954          54 IDEVPDFNKMYELY------DPPTVMFF-FRNKHMKIDLGTGNNNKINWVFEDKQEFIDIIETI  110 (114)
T ss_pred             CCCCHHHHHHcCCC------CCCEEEEE-ECCEEEEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence            66778999999998      36887777 799999999875422      13556666666543

It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.

>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein

Probab=87.91  E-value=0.96  Score=28.06  Aligned_cols=42  Identities=21%  Similarity=0.305  Sum_probs=29.9

Q ss_pred             cchHHhhhCCccccCCccceeEEEECCCCC----EEEEEeccCCCCCCHHHHHHHH
Q psy13875         34 KKEIATSYGVLIESAGIPLRGLFIIDTKGV----LRQITVNDLPVGRSVEEVLRLV   85 (105)
Q Consensus        34 ~~~vak~ygv~~~~~G~~~ratfiID~~G~----V~~~~~~~~~~~~~~~eil~~l   85 (105)
                      +..+++.|++.    +  .|+.+++++.+.    +...+.|    .++.+++.++|
T Consensus        63 ~~~~~~~~~i~----~--~Pt~~~~~~~~~~~~~~~~~~~G----~~~~~~l~~fi  108 (109)
T cd03002          63 NKPLCGKYGVQ----G--FPTLKVFRPPKKASKHAVEDYNG----ERSAKAIVDFV  108 (109)
T ss_pred             cHHHHHHcCCC----c--CCEEEEEeCCCcccccccccccC----ccCHHHHHHHh
Confidence            56899999987    3  699999988873    3343433    34777777765

MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.

>PTZ00443 Thioredoxin domain-containing protein; Provisional

Probab=86.62  E-value=2.5  Score=30.91  Aligned_cols=47  Identities=23%  Similarity=0.316  Sum_probs=34.3

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      .|.+..++++|++.    |  .|+.++++ +|++.....+    .++.+++.+++.+.
T Consensus        92 ~~~~~~l~~~~~I~----~--~PTl~~f~-~G~~v~~~~G----~~s~e~L~~fi~~~  138 (224)
T PTZ00443         92 ATRALNLAKRFAIK----G--YPTLLLFD-KGKMYQYEGG----DRSTEKLAAFALGD  138 (224)
T ss_pred             CcccHHHHHHcCCC----c--CCEEEEEE-CCEEEEeeCC----CCCHHHHHHHHHHH
Confidence            45667899999987    3  69999997 7877654433    35778888777654

>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO

Probab=86.53  E-value=1.7  Score=28.47  Aligned_cols=41  Identities=15%  Similarity=0.194  Sum_probs=31.0

Q ss_pred             CCc-eEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccC
Q psy13875         25 LKY-PLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDL   72 (105)
Q Consensus        25 l~f-pllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~   72 (105)
                      +.| -+-.|.+.+++..||+.    +  +|+.++. ++|+++....|..
T Consensus        62 v~f~kVdid~~~~la~~f~V~----s--IPTli~f-kdGk~v~~~~G~~  103 (111)
T cd02965          62 FRAAVVGRADEQALAARFGVL----R--TPALLFF-RDGRYVGVLAGIR  103 (111)
T ss_pred             EEEEEEECCCCHHHHHHcCCC----c--CCEEEEE-ECCEEEEEEeCcc
Confidence            444 34466778999999998    3  6877777 7999999988744

They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.

>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related)

Probab=86.48  E-value=1.6  Score=26.65  Aligned_cols=40  Identities=13%  Similarity=0.276  Sum_probs=26.7

Q ss_pred             cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875         34 KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus        34 ~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      +..+++.||+.    +  .|+. ++.++|++...+.|..    +.+++.++
T Consensus        64 ~~~~~~~~~i~----~--~Pt~-~~~~~g~~~~~~~g~~----~~~~l~~~  103 (104)
T cd02997          64 HDALKEEYNVK----G--FPTF-KYFENGKFVEKYEGER----TAEDIIEF  103 (104)
T ss_pred             cHHHHHhCCCc----c--ccEE-EEEeCCCeeEEeCCCC----CHHHHHhh
Confidence            67888999986    3  5765 5557899877766533    45555543

PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.

>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5

Probab=86.11  E-value=1  Score=27.41  Aligned_cols=44  Identities=23%  Similarity=0.318  Sum_probs=30.4

Q ss_pred             eeC-cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875         31 ADF-KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus        31 sD~-~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      .+. +..+++.|++.      ..|+.+++++.|+....+.+.    .+.+++.++
T Consensus        60 ~~~~~~~~~~~~~i~------~~P~~~~~~~~~~~~~~~~g~----~~~~~l~~~  104 (105)
T cd02998          60 ADEANKDLAKKYGVS------GFPTLKFFPKGSTEPVKYEGG----RDLEDLVKF  104 (105)
T ss_pred             CCCcchhhHHhCCCC------CcCEEEEEeCCCCCccccCCc----cCHHHHHhh
Confidence            344 57899999987      369999998887665555442    356666543

The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER

>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes

Probab=85.33  E-value=2.6  Score=25.44  Aligned_cols=40  Identities=10%  Similarity=0.229  Sum_probs=28.3

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEec
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN   70 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~   70 (105)
                      ++.|--+ .+...++++.|++.    +  .|+.+++ .+|+++....|
T Consensus        46 ~i~~~~vd~~~~~~~~~~~~i~----~--~Pt~~~~-~~g~~~~~~~g   86 (97)
T cd02984          46 SVLFLSIEAEELPEISEKFEIT----A--VPTFVFF-RNGTIVDRVSG   86 (97)
T ss_pred             ceEEEEEccccCHHHHHhcCCc----c--ccEEEEE-ECCEEEEEEeC
Confidence            3444433 34467899999987    3  6888888 58999887775

PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.

>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain)

Probab=84.01  E-value=3  Score=25.32  Aligned_cols=51  Identities=22%  Similarity=0.332  Sum_probs=32.6

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV   85 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l   85 (105)
                      +.|-.+ .|.+.++++.||+.    +  .|+.++++.+......+.+    +.+.+++.+++
T Consensus        51 ~~~~~id~~~~~~~~~~~~i~----~--~P~~~~~~~~~~~~~~~~g----~~~~~~l~~~~  102 (103)
T cd03001          51 VKVGAVDADVHQSLAQQYGVR----G--FPTIKVFGAGKNSPQDYQG----GRTAKAIVSAA  102 (103)
T ss_pred             ceEEEEECcchHHHHHHCCCC----c--cCEEEEECCCCcceeecCC----CCCHHHHHHHh
Confidence            444433 45678899999987    3  6999999755343333333    35677776654

Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.

>PF03544 TonB_C: Gram-negative bacterial TonB protein C-terminal; InterPro: IPR006260 The sequences in this set all contain a conserved C-terminal domain which is characteristic of TonB and is homologs

Probab=83.78  E-value=1.8  Score=25.42  Aligned_cols=39  Identities=26%  Similarity=0.267  Sum_probs=27.7

Q ss_pred             cceeEEEECCCCCEEEEEeccCCCCC-CHHHHHHHHHhhh
Q psy13875         51 PLRGLFIIDTKGVLRQITVNDLPVGR-SVEEVLRLVKAFQ   89 (105)
Q Consensus        51 ~~ratfiID~~G~V~~~~~~~~~~~~-~~~eil~~l~~l~   89 (105)
                      .....|.||++|+|..+.+-...... =.++++++++.++
T Consensus        17 ~v~v~~~I~~~G~v~~~~v~~s~~~~~l~~~a~~~v~~~~   56 (79)
T PF03544_consen   17 TVVVEFTIDPDGRVSDVRVIQSSGPPILDEAALRAVKKWR   56 (79)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEESSSSCSHHHHHHHHCC-E
T ss_pred             EEEEEEEEeCCCCEEEEEEEEccCHHHHHHHHHHHHHhCC
Confidence            36889999999999998875433222 4667788887743

TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria []. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetitive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to span the periplasm. Iron is essential for growth in both bacteria and mammals. Controlling the amount of free iron in solution is often used as a tactic by hosts to limit invasion of pathogenic microbes; binding iron tightly within protein molecules can accomplish this. Some bacteria express surface receptors to capture eukaryotic iron-binding compounds, while others have evolved siderophores to scavenge iron from iron-binding host proteins []. The absence of free iron molecules in the surrounding environment triggers transcription of gene clusters that encode both siderophore-synthesis ezymes, and receptors that recognise iron-bound siderophores []. An example of the latter is Escherichia coli fepA, which resides in the outer envelope and captures iron-bound enterobactin []. To complete transport of bound iron across the inner membrane, a second receptor complex is needed. The major component of this is tonB, a 27kDa protein that facilitates energy transfer from the proton motive force to outer receptors. B-12 and colicin receptors also make use of the tonB system to drive active transport at the outer membrane.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016020 membrane, 0030288 outer membrane-bounded periplasmic space; PDB: 1U07_B 1IHR_A 2GRX_C 2GSK_B 1QXX_A 1XX3_A 2K9K_A.

>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains

Probab=83.76  E-value=3.8  Score=23.54  Aligned_cols=51  Identities=22%  Similarity=0.322  Sum_probs=33.6

Q ss_pred             CCCceEEe-eCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875         24 DLKYPLLA-DFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV   85 (105)
Q Consensus        24 ~l~fplls-D~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l   85 (105)
                      ++.|-.+. |.+..+++.||+.    +  .|+.++. .+|.+...+.+..    ..+++...|
T Consensus        41 ~~~~~~i~~~~~~~~~~~~~v~----~--~P~~~~~-~~g~~~~~~~g~~----~~~~l~~~i   92 (93)
T cd02947          41 KVKFVKVDVDENPELAEEYGVR----S--IPTFLFF-KNGKEVDRVVGAD----PKEELEEFL   92 (93)
T ss_pred             CceEEEEECCCChhHHHhcCcc----c--ccEEEEE-ECCEEEEEEecCC----CHHHHHHHh
Confidence            55665543 3458899999987    3  6888888 5777777776533    345555444

Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio

>TIGR01352 tonB_Cterm TonB family C-terminal domain

Probab=83.42  E-value=4.3  Score=23.40  Aligned_cols=39  Identities=15%  Similarity=0.206  Sum_probs=26.1

Q ss_pred             cceeEEEECCCCCEEEEEeccCCCCCC-HHHHHHHHHhhh
Q psy13875         51 PLRGLFIIDTKGVLRQITVNDLPVGRS-VEEVLRLVKAFQ   89 (105)
Q Consensus        51 ~~ratfiID~~G~V~~~~~~~~~~~~~-~~eil~~l~~l~   89 (105)
                      .....|.||++|+|....+-..+..+. -++++++++.+.
T Consensus        11 ~v~v~~~i~~~G~v~~~~i~~ssg~~~ld~~a~~av~~~~   50 (74)
T TIGR01352        11 TVVVRFTVDADGRVTSVSVLKSSGDEALDRAALEAVRKAR   50 (74)
T ss_pred             EEEEEEEECCCCCEEEEEEEEcCCChhHHHHHHHHHHhCC
Confidence            367889999999999988743322222 345666776654

This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.

>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44

Probab=82.98  E-value=2.6  Score=26.36  Aligned_cols=40  Identities=15%  Similarity=0.365  Sum_probs=28.0

Q ss_pred             CcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875         33 FKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus        33 ~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      .+..++++|++.      ..|+++++++ | .+..+.|.    ++.+++.++
T Consensus        60 ~~~~l~~~~~V~------~~PT~~lf~~-g-~~~~~~G~----~~~~~l~~f   99 (100)
T cd02999          60 IKPSLLSRYGVV------GFPTILLFNS-T-PRVRYNGT----RTLDSLAAF   99 (100)
T ss_pred             CCHHHHHhcCCe------ecCEEEEEcC-C-ceeEecCC----CCHHHHHhh
Confidence            357899999987      3699999974 5 55666653    466666554

CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.

>KOG1651|consensus

Probab=82.51  E-value=2.2  Score=30.22  Aligned_cols=17  Identities=18%  Similarity=0.284  Sum_probs=15.0

Q ss_pred             eEEEECCCCCEEEEEec
Q psy13875         54 GLFIIDTKGVLRQITVN   70 (105)
Q Consensus        54 atfiID~~G~V~~~~~~   70 (105)
                      +-||||++|.|+.+|..
T Consensus       138 ~KFLVd~~G~vv~Ry~p  154 (171)
T KOG1651|consen  138 TKFLVDKDGHVVKRFSP  154 (171)
T ss_pred             EEEeECCCCcEEEeeCC
Confidence            57999999999999963

>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF

Probab=82.29  E-value=9.9  Score=28.46  Aligned_cols=43  Identities=16%  Similarity=0.256  Sum_probs=29.3

Q ss_pred             chHHhhhCCccccCCccceeEEEECCC-CCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         35 KEIATSYGVLIESAGIPLRGLFIIDTK-GVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        35 ~~vak~ygv~~~~~G~~~ratfiID~~-G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      ...++.+|+.      ..|++|||+++ +++.-+-.|.+    +.+++.+.|..
T Consensus       203 ~gqa~~l~v~------~~Pal~Lv~~~t~~~~pv~~G~i----S~deL~~Ri~~  246 (256)
T TIGR02739       203 SGQAQHLGVK------YFPALYLVNPKSQKMSPLAYGFI----SQDELKERILN  246 (256)
T ss_pred             hHHHHhcCCc------cCceEEEEECCCCcEEEEeeccC----CHHHHHHHHHH
Confidence            3467777775      47999999999 55554555544    57777665544

This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.

>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding

Probab=81.96  E-value=2.6  Score=27.08  Aligned_cols=53  Identities=23%  Similarity=0.219  Sum_probs=32.9

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCC---CCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTK---GVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~---G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      .+.|-.+ .|.+.+++++||+.      ..|+.++.+..   |.+  .+.|..    .-.++.+.|+++
T Consensus        53 ~i~~~~vd~d~~~~l~~~~~v~------~vPt~~i~~~g~~~~~~--~~~G~~----~~~el~~~i~~i  109 (113)
T cd02975          53 KLKLEIYDFDEDKEKAEKYGVE------RVPTTIFLQDGGKDGGI--RYYGLP----AGYEFASLIEDI  109 (113)
T ss_pred             ceEEEEEeCCcCHHHHHHcCCC------cCCEEEEEeCCeecceE--EEEecC----chHHHHHHHHHH
Confidence            4556555 56778999999987      46988888653   334  344422    334555555544

PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.

>COG0810 TonB Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]

Probab=81.77  E-value=4.4  Score=29.65  Aligned_cols=50  Identities=20%  Similarity=0.382  Sum_probs=34.2

Q ss_pred             hHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCH-HHHHHHHHhhhh
Q psy13875         36 EIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV-EEVLRLVKAFQF   90 (105)
Q Consensus        36 ~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~-~eil~~l~~l~~   90 (105)
                      ..|++-|+.    | ...-.|.||++|.|..+.+...+..+.. .+.|++++.+..
T Consensus       171 ~~A~~~g~~----G-~V~V~f~i~~~G~v~~v~v~~SSg~~~lD~aal~air~~~~  221 (244)
T COG0810         171 AQARARGIE----G-TVKVKFTIDPDGNVTNVRVLKSSGSPALDRAALEAIRKWRF  221 (244)
T ss_pred             HHHHhcCCC----c-eEEEEEEECCCCCEeeeEEeecCCcHHHHHHHHHHHHHhcc
Confidence            355555553    5 5789999999999999998654433333 456777777653

>smart00594 UAS UAS domain

Probab=81.25  E-value=5.1  Score=25.97  Aligned_cols=45  Identities=16%  Similarity=0.121  Sum_probs=29.1

Q ss_pred             chHHhhhCCccccCCccceeEEEECCCC-CEEEEEeccCCCCCCHHHHHHHH
Q psy13875         35 KEIATSYGVLIESAGIPLRGLFIIDTKG-VLRQITVNDLPVGRSVEEVLRLV   85 (105)
Q Consensus        35 ~~vak~ygv~~~~~G~~~ratfiID~~G-~V~~~~~~~~~~~~~~~eil~~l   85 (105)
                      .++++.|++.    |  .|+..|+|++| ......++......+.++++..|
T Consensus        76 ~~l~~~~~~~----~--~P~~~~l~~~~g~~~~~~~~~~~G~~~~~~l~~~l  121 (122)
T smart00594       76 QRVSQFYKLD----S--FPYVAIVDPRTGQRVIEWVGVVEGEISPEELMTFL  121 (122)
T ss_pred             HHHHHhcCcC----C--CCEEEEEecCCCceeEEEeccccCCCCHHHHHHhh
Confidence            5788888876    3  69999999997 22222332232234678887765

>PTZ00051 thioredoxin; Provisional

Probab=80.88  E-value=2.3  Score=25.79  Aligned_cols=41  Identities=10%  Similarity=0.157  Sum_probs=28.9

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEecc
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVND   71 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~   71 (105)
                      ++.|-.+ .|....+++.|++.    +  .|+. ++-++|+++..+.|.
T Consensus        49 ~~~~~~vd~~~~~~~~~~~~v~----~--~Pt~-~~~~~g~~~~~~~G~   90 (98)
T PTZ00051         49 KMVFVKVDVDELSEVAEKENIT----S--MPTF-KVFKNGSVVDTLLGA   90 (98)
T ss_pred             CcEEEEEECcchHHHHHHCCCc----e--eeEE-EEEeCCeEEEEEeCC
Confidence            4555433 34457899999987    3  5864 555899999998874

>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus

Probab=80.23  E-value=5.1  Score=24.81  Aligned_cols=44  Identities=11%  Similarity=0.206  Sum_probs=29.8

Q ss_pred             eCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         32 DFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        32 D~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      |....+++.|++.      ..|+.++++ +|. ...+.|    ..+.+++.+.+++
T Consensus        59 ~~~~~~~~~~~I~------~~Pt~~l~~-~~~-~~~~~G----~~~~~~l~~~~~~  102 (104)
T cd03000          59 TAYSSIASEFGVR------GYPTIKLLK-GDL-AYNYRG----PRTKDDIVEFANR  102 (104)
T ss_pred             ccCHhHHhhcCCc------cccEEEEEc-CCC-ceeecC----CCCHHHHHHHHHh
Confidence            4567899999987      369999994 454 344544    2357777776654

The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	105
3tue_A	219	The Structure Of Tryparedoxin Peroxidase I From Lei		7e-27
2z9s_A	199	Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXI		5e-26
1qq2_A	199	Crystal Structure Of A Mammalian 2-Cys Peroxiredoxi		5e-26
2rii_A	199	Crystal Structure Of Human Peroxiredoxin I In Compl		8e-26
3hy2_A	206	Crystal Structure Of Sulfiredoxin In Complex With P		9e-26
3qpm_A	240	Crystal Structure Of Peroxiredoxin Prx4 From Pseudo		2e-25
3tkp_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		3e-25
3tks_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		3e-25
3tjk_A	254	Crystal Structure Of Human Peroxiredoxin Iv C245a M		3e-25
3tjf_A	254	Crystal Structure Of Human Peroxiredoxin Iv C51a Mu		3e-25
3tkr_A	246	Crystal Structure Of Full-Length Human Peroxiredoxi		3e-25
3tjj_A	254	Crystal Structure Of Human Peroxiredoxin Iv C245a M		3e-25
3tjb_A	254	Crystal Structure Of Wild-Type Human Peroxiredoxin		4e-25
2pn8_A	211	Crystal Structure Of Human Peroxiredoxin 4 (Thiored		4e-25
1zye_A	220	Crystal Strucutre Analysis Of Bovine Mitochondrial		9e-25
3zvj_A	219	Crystal Structure Of High Molecular Weight (Hmw) Fo		1e-24
3ztl_A	222	Crystal Structure Of Decameric Form Of Peroxiredoxi		1e-24
1qmv_A	197	Thioredoxin Peroxidase B From Red Blood Cells Lengt		1e-24
3zvj_D	219	Crystal Structure Of High Molecular Weight (Hmw) Fo		2e-24
1uul_A	202	Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cr		3e-24
3sbc_A	216	Crystal Structure Of Saccharomyces Cerevisiae Tsa1c		7e-24
1e2y_A	188	Tryparedoxin Peroxidase From Crithidia Fasciculata		2e-21
2c0d_A	221	Structure Of The Mitochondrial 2-Cys Peroxiredoxin		2e-16
1zof_A	198	Crystal Structure Of Alkyl Hydroperoxide-Reductase		1e-14
2h01_A	192	Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I		3e-14
2h66_A	213	The Crystal Structure Of Plasmodium Vivax 2-Cys Per		2e-13
2e2g_A	250	Crystal Structure Of Archaeal Peroxiredoxin, Thiore		4e-08
2e2m_A	250	Crystal Structure Of Archaeal Peroxiredoxin, Thiore		4e-08
3a5w_A	249	Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1		5e-08
3a2w_A	249	Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Pero		5e-08
3a2v_A	249	Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Comp		5e-08
2zct_A	249	Oxidation Of Archaeal Peroxiredoxin Involves A Hype		5e-08
1we0_A	187	Crystal Structure Of Peroxiredoxin (Ahpc) From Amph		2e-07
2v2g_A	233	Crystal Structure Of The C45s Mutant Of The Peroxir		2e-07
1x0r_A	249	Thioredoxin Peroxidase From Aeropyrum Pernix K1 Len		2e-07
2cv4_A	250	Crystal Structure Of An Archaeal Peroxiredoxin From		2e-07
2bmx_A	195	Mycobacterium Tuberculosis Ahpc Length = 195		3e-06
1yex_A	186	Structural And Biochemical Analysis Of The Link Bet		5e-06
1n8j_A	186	Crystal Structure Of Ahpc With Active Site Cysteine		6e-06
3emp_A	186	Crystal Structure Of The S-Acetanilide Modified For		6e-06
1yep_A	186	Structural And Biochemical Analysis Of The Link Bet		6e-06
1yf0_A	186	Structural And Biochemical Analysis Of The Link Bet		6e-06
1yf1_A	186	Structural And Biochemical Analysis Of The Link Bet		6e-06
1xcc_A	220	1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2		7e-06
3tb2_A	220	1-Cys Peroxidoxin From Plasmodium Yoelli Length = 2		7e-06
1xvw_A	160	Crystal Structure Of Ahpe From Mycobacterium Tuberc		1e-04
1xxu_A	153	Crystal Structure Of Ahpe From Mycrobacterium Tuber		2e-04

>pdb|3TUE|A Chain A, The Structure Of Tryparedoxin Peroxidase I From Leishmania Major Length = 219

Iteration: 1
 Score =  115 bits (288), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 59/85 (69%), Positives = 69/85 (81%), Gaps = 2/85 (2%)
Query: 12  LEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVND 71
           L+D K+G  GLG +  P+LAD  K IA SYGVL ES G+  RGLFIID  G+LRQITVND
Sbjct: 109 LQDRKKG--GLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVND 166
Query: 72  LPVGRSVEEVLRLVKAFQFVDKHGE 96
           +PVGRSVEEVLRL++AFQFV+KHGE
Sbjct: 167 MPVGRSVEEVLRLLEAFQFVEKHGE 191

>pdb|2Z9S|A Chain A, Crystal Structure Analysis Of Rat Hbp23PEROXIREDOXIN I, Cys52ser Mutant Length = 199

Iteration: 1
 Score =  112 bits (280), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   K+  GGLG +  PL++D K+ IA  YGVL    GI  RGLFIID KG+LRQIT+
Sbjct: 86  AWINTPKK-QGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITI 144
Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E+LRLV+AFQF DKHGE
Sbjct: 145 NDLPVGRSVDEILRLVQAFQFTDKHGE 171

>pdb|1QQ2|A Chain A, Crystal Structure Of A Mammalian 2-Cys Peroxiredoxin, Hbp23. Length = 199

Iteration: 1
 Score =  112 bits (280), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 55/87 (63%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   K+  GGLG +  PL++D K+ IA  YGVL    GI  RGLFIID KG+LRQIT+
Sbjct: 86  AWINTPKK-QGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITI 144
Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E+LRLV+AFQF DKHGE
Sbjct: 145 NDLPVGRSVDEILRLVQAFQFTDKHGE 171

>pdb|2RII|A Chain A, Crystal Structure Of Human Peroxiredoxin I In Complex With Sulfiredoxin Length = 199

Iteration: 1
 Score =  112 bits (279), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 66/89 (74%), Gaps = 1/89 (1%)
Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   K+  GGLG +  PL++D K+ IA  YGVL    GI  RGLFIID KG+LRQITV
Sbjct: 86  AWVNTPKK-QGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITV 144
Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGEGS 98
           NDLPVGRSV+E LRLV+AFQF DKHGE S
Sbjct: 145 NDLPVGRSVDETLRLVQAFQFTDKHGEVS 173

>pdb|3HY2|A Chain A, Crystal Structure Of Sulfiredoxin In Complex With Peroxiredoxin I And Atp:mg2+ Length = 206

Iteration: 1
 Score =  111 bits (278), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 57/88 (64%), Positives = 66/88 (75%), Gaps = 1/88 (1%)
Query: 11  WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
           W+   K+  GGLG +  PL++D K+ IA  YGVL    GI  RGLFIID KG+LRQITVN
Sbjct: 87  WVNTPKK-QGGLGPMNIPLVSDPKRTIAQDYGVLKADEGISFRGLFIIDDKGILRQITVN 145
Query: 71  DLPVGRSVEEVLRLVKAFQFVDKHGEGS 98
           DLPVGRSV+E LRLV+AFQF DKHGE S
Sbjct: 146 DLPVGRSVDETLRLVQAFQFTDKHGEVS 173

>pdb|3QPM|A Chain A, Crystal Structure Of Peroxiredoxin Prx4 From Pseudosciaena Crocea Length = 240

Iteration: 1
 Score =  110 bits (276), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 53/77 (68%), Positives = 62/77 (80%)
Query: 20  GGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVE 79
           GGLG +K PLL+D   +I+  YGV +E  G  LRGLFIID KGVLRQIT+NDLPVGRSV+
Sbjct: 136 GGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVD 195
Query: 80  EVLRLVKAFQFVDKHGE 96
           E LRLV+AFQ+ DKHGE
Sbjct: 196 ETLRLVQAFQYTDKHGE 212

>pdb|3TKP|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In The Reduced Form Length = 246

Iteration: 1
 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   ++  GGLG ++ PLL+D   +I+  YGV +E +G  LRGLFIID KG+LRQIT+
Sbjct: 133 AWINTPRR-QGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITL 191
Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E LRLV+AFQ+ DKHGE
Sbjct: 192 NDLPVGRSVDETLRLVQAFQYTDKHGE 218

>pdb|3TKS|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 In Three Different Redox States Length = 246

Iteration: 1
 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   ++  GGLG ++ PLL+D   +I+  YGV +E +G  LRGLFIID KG+LRQIT+
Sbjct: 133 AWINTPRR-QGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITL 191
Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E LRLV+AFQ+ DKHGE
Sbjct: 192 NDLPVGRSVDETLRLVQAFQYTDKHGE 218

>pdb|3TJK|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Reduced Form Length = 254

Iteration: 1
 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   ++  GGLG ++ PLL+D   +I+  YGV +E +G  LRGLFIID KG+LRQIT+
Sbjct: 141 AWINTPRR-QGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITL 199
Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E LRLV+AFQ+ DKHGE
Sbjct: 200 NDLPVGRSVDETLRLVQAFQYTDKHGE 226

>pdb|3TJF|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C51a Mutant In Reduced Form Length = 254

Iteration: 1
 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   ++  GGLG ++ PLL+D   +I+  YGV +E +G  LRGLFIID KG+LRQIT+
Sbjct: 141 AWINTPRR-QGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITL 199
Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E LRLV+AFQ+ DKHGE
Sbjct: 200 NDLPVGRSVDETLRLVQAFQYTDKHGE 226

>pdb|3TKR|A Chain A, Crystal Structure Of Full-Length Human Peroxiredoxin 4 With T118e Mutation Length = 246

Iteration: 1
 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   ++  GGLG ++ PLL+D   +I+  YGV +E +G  LRGLFIID KG+LRQIT+
Sbjct: 133 AWINTPRR-QGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITL 191
Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E LRLV+AFQ+ DKHGE
Sbjct: 192 NDLPVGRSVDETLRLVQAFQYTDKHGE 218

>pdb|3TJJ|A Chain A, Crystal Structure Of Human Peroxiredoxin Iv C245a Mutant In Sulfenylated Form Length = 254

Iteration: 1
 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   ++  GGLG ++ PLL+D   +I+  YGV +E +G  LRGLFIID KG+LRQIT+
Sbjct: 141 AWINTPRR-QGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITL 199
Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E LRLV+AFQ+ DKHGE
Sbjct: 200 NDLPVGRSVDETLRLVQAFQYTDKHGE 226

>pdb|3TJB|A Chain A, Crystal Structure Of Wild-Type Human Peroxiredoxin Iv Length = 254

Iteration: 1
 Score =  109 bits (273), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   ++  GGLG ++ PLL+D   +I+  YGV +E +G  LRGLFIID KG+LRQIT+
Sbjct: 141 AWINTPRR-QGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITL 199
Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E LRLV+AFQ+ DKHGE
Sbjct: 200 NDLPVGRSVDETLRLVQAFQYTDKHGE 226

>pdb|2PN8|A Chain A, Crystal Structure Of Human Peroxiredoxin 4 (Thioredoxin Peroxidase) Length = 211

Iteration: 1
 Score =  109 bits (272), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/87 (59%), Positives = 67/87 (77%), Gaps = 1/87 (1%)
Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   ++  GGLG ++ PLL+D   +I+  YGV +E +G  LRGLFIID KG+LRQIT+
Sbjct: 98  AWINTPRR-QGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITL 156
Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E LRLV+AFQ+ DKHGE
Sbjct: 157 NDLPVGRSVDETLRLVQAFQYTDKHGE 183

>pdb|1ZYE|A Chain A, Crystal Strucutre Analysis Of Bovine Mitochondrial Peroxiredoxin Iii Length = 220

Iteration: 1
 Score =  108 bits (269), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 52/89 (58%), Positives = 67/89 (75%), Gaps = 1/89 (1%)
Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+ +  + +GGLG +   LL+D  K+I+  YGVL+E  G+ LRGLFIID  GV++ ++V
Sbjct: 106 AWI-NTPRKNGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSV 164
Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGEGS 98
           NDLPVGRSVEE LRLVKAFQFV+ HGE S
Sbjct: 165 NDLPVGRSVEETLRLVKAFQFVEAHGEVS 193

>pdb|3ZVJ|A Chain A, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219

Iteration: 1
 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W +++ +  GGLG +K PLLAD K+EI+ +YGV  E  G   RGLFIID  G+LRQIT+
Sbjct: 116 AW-DNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITI 174
Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           ND PVGRSV+E LRL+ AFQFV+KHGE
Sbjct: 175 NDKPVGRSVDETLRLLDAFQFVEKHGE 201

>pdb|3ZTL|A Chain A, Crystal Structure Of Decameric Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 222

Iteration: 1
 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 52/84 (61%), Positives = 65/84 (77%)
Query: 13  EDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDL 72
           +++ +  GGLG +K PLLAD K+EI+ +YGV  E  G   RGLFIID  G+LRQIT+ND 
Sbjct: 121 DNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDK 180
Query: 73  PVGRSVEEVLRLVKAFQFVDKHGE 96
           PVGRSV+E LRL+ AFQFV+KHGE
Sbjct: 181 PVGRSVDETLRLLDAFQFVEKHGE 204

>pdb|1QMV|A Chain A, Thioredoxin Peroxidase B From Red Blood Cells Length = 197

Iteration: 1
 Score =  107 bits (268), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 54/87 (62%), Positives = 65/87 (74%), Gaps = 1/87 (1%)
Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W+   ++ +GGLG L  PLLAD  + ++  YGVL    GI  RGLFIID KGVLRQITV
Sbjct: 84  AWINTPRK-EGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITV 142
Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           NDLPVGRSV+E LRLV+AFQ+ D+HGE
Sbjct: 143 NDLPVGRSVDEALRLVQAFQYTDEHGE 169

>pdb|3ZVJ|D Chain D, Crystal Structure Of High Molecular Weight (Hmw) Form Of Peroxiredoxin I From Schistosoma Mansoni Length = 219

Iteration: 1
 Score =  107 bits (267), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 53/87 (60%), Positives = 66/87 (75%), Gaps = 1/87 (1%)
Query: 10  VWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV 69
            W +++ +  GGLG +K PLLAD K+EI+ +YGV  E  G   RGLFIID  G+LRQIT+
Sbjct: 116 AW-DNLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITL 174
Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           ND PVGRSV+E LRL+ AFQFV+KHGE
Sbjct: 175 NDKPVGRSVDETLRLLDAFQFVEKHGE 201

>pdb|1UUL|A Chain A, Tryparedoxin Peroxidase (Txnpx) From Trypanosoma Cruzi In The Reduced State Length = 202

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 54/82 (65%), Positives = 62/82 (75%)
Query: 15  VKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPV 74
           +++  GGLG +  P+LAD  K I  SYGVL E  G+  RGLFIID K  LRQITVNDLPV
Sbjct: 90  IERKRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPV 149
Query: 75  GRSVEEVLRLVKAFQFVDKHGE 96
           GR V+E LRLVKAFQFV+KHGE
Sbjct: 150 GRDVDEALRLVKAFQFVEKHGE 171

>pdb|3SBC|A Chain A, Crystal Structure Of Saccharomyces Cerevisiae Tsa1c47s Mutant Protein Length = 216

Iteration: 1
 Score =  105 bits (262), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 49/82 (59%), Positives = 64/82 (78%)
Query: 14  DVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLP 73
           ++ + +GGLG +  PLLAD    ++  YGVLIE  G+ LRGLFIID KGV+R IT+NDLP
Sbjct: 105 NIPRKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLP 164
Query: 74  VGRSVEEVLRLVKAFQFVDKHG 95
           VGR+V+E LRLV+AFQ+ DK+G
Sbjct: 165 VGRNVDEALRLVEAFQWTDKNG 186

>pdb|1E2Y|A Chain A, Tryparedoxin Peroxidase From Crithidia Fasciculata Length = 188

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 48/82 (58%), Positives = 60/82 (73%)
Query: 15  VKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPV 74
           V +  GGLG    P LAD  K IA +YGVL E +G+  RG+FIID  G LRQI +ND P+
Sbjct: 90  VDRKKGGLGPXAIPXLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDXPI 149
Query: 75  GRSVEEVLRLVKAFQFVDKHGE 96
           GR+VEEV+RLV+A QFV++HGE
Sbjct: 150 GRNVEEVIRLVEALQFVEEHGE 171

>pdb|2C0D|A Chain A, Structure Of The Mitochondrial 2-Cys Peroxiredoxin From Plasmodium Falciparum Length = 221

Iteration: 1
 Score = 80.5 bits (197), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 56/77 (72%), Gaps = 1/77 (1%)
Query: 20  GGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVE 79
           GG+G++++ L++D  K+I+ +Y VL +++   LRGLFIID  G +R  TVNDLP+GR+V+
Sbjct: 115 GGIGNVEFTLVSDINKDISKNYNVLYDNS-FALRGLFIIDKNGCVRHQTVNDLPIGRNVQ 173
Query: 80  EVLRLVKAFQFVDKHGE 96
           EVLR + +   VD  GE
Sbjct: 174 EVLRTIDSIIHVDTSGE 190

>pdb|1ZOF|A Chain A, Crystal Structure Of Alkyl Hydroperoxide-Reductase (Ahpc) From Helicobacter Pylori Length = 198

Iteration: 1
 Score = 74.7 bits (182), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 51/77 (66%), Gaps = 1/77 (1%)
Query: 20  GGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVE 79
           GG+G + +P++AD  K I+  Y VL E A I LRG F+ID    +R   +NDLP+GR+ +
Sbjct: 92  GGIGQVSFPMVADITKSISRDYDVLFEEA-IALRGAFLIDKNMKVRHAVINDLPLGRNAD 150
Query: 80  EVLRLVKAFQFVDKHGE 96
           E+LR+V A    ++HGE
Sbjct: 151 EMLRMVDALLHFEEHGE 167

>pdb|2H01|A Chain A, Py00414- Plasmodium Yoelii Thioredoxin Peroxidase I Length = 192

Iteration: 1
 Score = 73.6 bits (179), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Query: 18  GDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRS 77
             GG+G++K+ L++D  K IA SY VL   + + LR   +ID +GV++ + VN+L +GRS
Sbjct: 88  SQGGIGNIKHTLISDISKSIARSYDVLFNES-VALRAFVLIDKQGVVQHLLVNNLALGRS 146
Query: 78  VEEVLRLVKAFQFVDKHGE 96
           V+E+LRL+ A Q  +K+G+
Sbjct: 147 VDEILRLIDALQHHEKYGD 165

>pdb|2H66|A Chain A, The Crystal Structure Of Plasmodium Vivax 2-Cys Peroxiredoxin Length = 213

Iteration: 1
 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 31/77 (40%), Positives = 54/77 (70%), Gaps = 1/77 (1%)
Query: 20  GGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVE 79
           GG+G++K+ LL+D  K I+  Y VL + + + LR   +ID  G+++ + VN+L +GRSV+
Sbjct: 111 GGIGNIKHTLLSDITKSISKDYNVLFDDS-VSLRAFVLIDMNGIVQHLLVNNLAIGRSVD 169
Query: 80  EVLRLVKAFQFVDKHGE 96
           E+LR++ A Q  +K+G+
Sbjct: 170 EILRIIDAIQHHEKYGD 186

>pdb|2E2G|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Pre-Oxidation Form) Length = 250

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 25  LKYPLLADFKKEIATSYGVL-IESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83
           + +P++AD +  +A   G+L  ESA   +RG+FI+D +GV+R +    + +GR V+E+LR
Sbjct: 97  IPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILR 156
Query: 84  LVKAFQFVDK 93
           +VKA +  D 
Sbjct: 157 IVKALKLGDS 166

>pdb|2E2M|A Chain A, Crystal Structure Of Archaeal Peroxiredoxin, Thioredoxin Peroxidase From Aeropyrum Pernix K1 (Sulfinic Acid Form) Length = 250

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 25  LKYPLLADFKKEIATSYGVL-IESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83
           + +P++AD +  +A   G+L  ESA   +RG+FI+D +GV+R +    + +GR V+E+LR
Sbjct: 97  IPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILR 156
Query: 84  LVKAFQFVDK 93
           +VKA +  D 
Sbjct: 157 IVKALKLGDS 166

>pdb|3A5W|A Chain A, Peroxiredoxin (Wild Type) From Aeropyrum Pernix K1 (Reduced Form) Length = 249

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 25  LKYPLLADFKKEIATSYGVL-IESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83
           + +P++AD +  +A   G+L  ESA   +RG+FI+D +GV+R +    + +GR V+E+LR
Sbjct: 96  IPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILR 155
Query: 84  LVKAFQFVDK 93
           +VKA +  D 
Sbjct: 156 IVKALKLGDS 165

>pdb|3A2W|A Chain A, Peroxiredoxin (C50s) From Aeropytum Pernix K1 (Peroxide-Bound Form) Length = 249

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 25  LKYPLLADFKKEIATSYGVL-IESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83
           + +P++AD +  +A   G+L  ESA   +RG+FI+D +GV+R +    + +GR V+E+LR
Sbjct: 96  IPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILR 155
Query: 84  LVKAFQFVDK 93
           +VKA +  D 
Sbjct: 156 IVKALKLGDS 165

>pdb|3A2V|A Chain A, Peroxiredoxin (C207s) From Aeropyrum Pernix K1 Complexed With Hydrogen Peroxide Length = 249

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 25  LKYPLLADFKKEIATSYGVL-IESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83
           + +P++AD +  +A   G+L  ESA   +RG+FI+D +GV+R +    + +GR V+E+LR
Sbjct: 96  IPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILR 155
Query: 84  LVKAFQFVDK 93
           +VKA +  D 
Sbjct: 156 IVKALKLGDS 165

>pdb|2ZCT|A Chain A, Oxidation Of Archaeal Peroxiredoxin Involves A Hypervalent Sulfur Intermediate Length = 249

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 46/70 (65%), Gaps = 1/70 (1%)
Query: 25  LKYPLLADFKKEIATSYGVL-IESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83
           + +P++AD +  +A   G+L  ESA   +RG+FI+D +GV+R +    + +GR V+E+LR
Sbjct: 96  IPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILR 155
Query: 84  LVKAFQFVDK 93
           +VKA +  D 
Sbjct: 156 IVKALKLGDS 165

>pdb|1WE0|A Chain A, Crystal Structure Of Peroxiredoxin (Ahpc) From Amphibacillus Xylanus Length = 187

Iteration: 1
 Score = 50.8 bits (120), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/74 (33%), Positives = 43/74 (58%)
Query: 21  GLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEE 80
            +G ++Y ++ D  + I+  + VL E  G+  RG FIID  GV++ I +N   +GR    
Sbjct: 88  AVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDAST 147
Query: 81  VLRLVKAFQFVDKH 94
           ++  VKA Q+V ++
Sbjct: 148 LINKVKAAQYVREN 161

>pdb|2V2G|A Chain A, Crystal Structure Of The C45s Mutant Of The Peroxiredoxin 6 Of Arenicola Marina. Monoclinic Form Length = 233

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 30/87 (34%), Positives = 46/87 (52%), Gaps = 6/87 (6%)
Query: 11  WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVL----IESAGIPL--RGLFIIDTKGVL 64
           W EDVK   G  GD+ YP++AD  +E+A   G++      S G+PL  R +FII     L
Sbjct: 80  WSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKL 139
Query: 65  RQITVNDLPVGRSVEEVLRLVKAFQFV 91
           +   +     GR+  E+LR++ + Q  
Sbjct: 140 KLSILYPATTGRNFSEILRVIDSLQLT 166

>pdb|1X0R|A Chain A, Thioredoxin Peroxidase From Aeropyrum Pernix K1 Length = 249

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 25  LKYPLLADFKKEIATSYGVL-IESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83
           + +P++AD +  +A   G+L  ESA   +RG+FI+D +GV+R        +GR V+E+LR
Sbjct: 96  IPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTXLYYPXELGRLVDEILR 155
Query: 84  LVKAFQFVDK 93
           +VKA +  D 
Sbjct: 156 IVKALKLGDS 165

>pdb|2CV4|A Chain A, Crystal Structure Of An Archaeal Peroxiredoxin From The Aerobic Hyperthermophilic Crenarchaeon Aeropyrum Pernix K1 Length = 250

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 1/70 (1%)
Query: 25  LKYPLLADFKKEIATSYGVL-IESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83
           + +P++AD +  +A   G+L  ESA   +RG+FI+D +GV+R        +GR V+E+LR
Sbjct: 97  IPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTXLYYPXELGRLVDEILR 156
Query: 84  LVKAFQFVDK 93
           +VKA +  D 
Sbjct: 157 IVKALKLGDS 166

>pdb|2BMX|A Chain A, Mycobacterium Tuberculosis Ahpc Length = 195

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 22  LGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEV 81
           L  L +P L+D K+E++ + GVL  + G+  R  FI+D    ++ ++     VGR+V+EV
Sbjct: 103 LKTLPFPXLSDIKRELSQAAGVL-NADGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEV 161
Query: 82  LRLVKAFQ 89
           LR++ A Q
Sbjct: 162 LRVLDALQ 169

>pdb|1YEX|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 45.8 bits (107), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 22  LGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEV 81
           +  +KY ++ D    +  ++  + E  G+  R  F++D +G+++ I V    +GR   ++
Sbjct: 88  IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDL 147
Query: 82  LRLVKAFQFVDKH 94
           LR +KA Q+V  H
Sbjct: 148 LRKIKAAQYVAAH 160

>pdb|1N8J|A Chain A, Crystal Structure Of Ahpc With Active Site Cysteine Mutated To Serine (C46s) Length = 186

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 22  LGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEV 81
           +  +KY ++ D    +  ++  + E  G+  R  F++D +G+++ I V    +GR   ++
Sbjct: 88  IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDL 147
Query: 82  LRLVKAFQFVDKH 94
           LR +KA Q+V  H
Sbjct: 148 LRKIKAAQYVAAH 160

>pdb|3EMP|A Chain A, Crystal Structure Of The S-Acetanilide Modified Form Of C165s Ahpc Length = 186

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 22  LGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEV 81
           +  +KY ++ D    +  ++  + E  G+  R  F++D +G+++ I V    +GR   ++
Sbjct: 88  IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDL 147
Query: 82  LRLVKAFQFVDKH 94
           LR +KA Q+V  H
Sbjct: 148 LRKIKAAQYVAAH 160

>pdb|1YEP|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Olgomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 22  LGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEV 81
           +  +KY ++ D    +  ++  + E  G+  R  F++D +G+++ I V    +GR   ++
Sbjct: 88  IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDL 147
Query: 82  LRLVKAFQFVDKH 94
           LR +KA Q+V  H
Sbjct: 148 LRKIKAAQYVAAH 160

>pdb|1YF0|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 22  LGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEV 81
           +  +KY ++ D    +  ++  + E  G+  R  F++D +G+++ I V    +GR   ++
Sbjct: 88  IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDL 147
Query: 82  LRLVKAFQFVDKH 94
           LR +KA Q+V  H
Sbjct: 148 LRKIKAAQYVAAH 160

>pdb|1YF1|A Chain A, Structural And Biochemical Analysis Of The Link Between Enzymatic Activity And Oligomerization In Ahpc, A Bacterial Peroxiredoxin. Length = 186

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 22  LGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEV 81
           +  +KY ++ D    +  ++  + E  G+  R  F++D +G+++ I V    +GR   ++
Sbjct: 88  IAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDL 147
Query: 82  LRLVKAFQFVDKH 94
           LR +KA Q+V  H
Sbjct: 148 LRKIKAAQYVAAH 160

>pdb|1XCC|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 6   EGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIES----AGIPL--RGLFIID 59
           E  + W+ED+K   G L   + P++ D  +E+A    ++ E      G+PL  R LF I 
Sbjct: 77  ESHDKWIEDIKYY-GKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFIS 135
Query: 60  TKGVLRQITVNDLPVGRSVEEVLRLVKAFQFV 91
            +  ++   +     GR+  E+LR++K+ Q  
Sbjct: 136 PEKKIKATVLYPATTGRNAHEILRVLKSLQLT 167

>pdb|3TB2|A Chain A, 1-Cys Peroxidoxin From Plasmodium Yoelli Length = 220

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 6   EGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIES----AGIPL--RGLFIID 59
           E  + W+ED+K   G L   + P++ D  +E+A    ++ E      G+PL  R LF I 
Sbjct: 77  ESHDKWIEDIKYY-GKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFIS 135
Query: 60  TKGVLRQITVNDLPVGRSVEEVLRLVKAFQFV 91
            +  ++   +     GR+  E+LR++K+ Q  
Sbjct: 136 PEKKIKATVLYPATTGRNAHEILRVLKSLQLT 167

>pdb|1XVW|A Chain A, Crystal Structure Of Ahpe From Mycobacterium Tuberculosis, A 1-Cys Peroxiredoxin Length = 160

Iteration: 1
 Score = 41.2 bits (95), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 25  LKYPLLADFKKE--IATSYGVLIESAGIPLRGLFIIDTKGVLR 65
             +PLL+DF     ++ +YGV  E AGI  RG F++D  G++R
Sbjct: 93  FTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIR 135

>pdb|1XXU|A Chain A, Crystal Structure Of Ahpe From Mycrobacterium Tuberculosis, A 1-Cys Peroxiredoxin Length = 153

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 18/43 (41%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
Query: 25  LKYPLLADFKKE--IATSYGVLIESAGIPLRGLFIIDTKGVLR 65
             +PLL+DF     ++ +YGV  E AGI  RG F++D  G++R
Sbjct: 86  FTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIR 128

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	6e-47
1e2y_A	188	TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin	7e-47
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	8e-47
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	9e-47
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	1e-46
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	1e-46
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	1e-46
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	1e-46
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	2e-46
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	9e-45
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	2e-44
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	2e-44
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	4e-44
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	2e-43
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	1e-42
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	4e-37
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	6e-37
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	7e-37
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	3e-36
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	3e-35
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	9e-26
2ywn_A	157	Peroxiredoxin-like protein; redox protein, structu	9e-13
2cx4_A	164	Bacterioferritin comigratory protein; oxidoreducta	1e-12
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	8e-09
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	3e-07
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	3e-06
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	1e-05
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	2e-05
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	2e-05
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	2e-05
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	3e-05
4evm_A	138	Thioredoxin family protein; structural genomics, n	8e-05
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	2e-04
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	2e-04
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	7e-04

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D Length = 222

 Score =  148 bits (377), Expect = 6e-47
 Identities = 53/86 (61%), Positives = 65/86 (75%), Gaps = 1/86 (1%)

Query: 11  WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
           W  ++ +  GGLG +K PLLAD K+EI+ +YGV  E  G   RGLFIID  G+LRQIT+N
Sbjct: 120 WD-NLDRKSGGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITIN 178

Query: 71  DLPVGRSVEEVLRLVKAFQFVDKHGE 96
           D PVGRSV+E LRL+ AFQFV+KHGE
Sbjct: 179 DKPVGRSVDETLRLLDAFQFVEKHGE 204

>1e2y_A TRYP, tryparedoxin peroxidase; 2-Cys peroxiredoxin, oxidoreductase; 3.2A {Crithidia fasciculata} SCOP: c.47.1.10 Length = 188

 Score =  147 bits (374), Expect = 7e-47
 Identities = 47/78 (60%), Positives = 61/78 (78%)

Query: 19  DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
            GGLG +  P+LAD  K IA +YGVL E +G+  RG+FIID  G LRQI +ND+P+GR+V
Sbjct: 94  KGGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNV 153

Query: 79  EEVLRLVKAFQFVDKHGE 96
           EEV+RLV+A QFV++HGE
Sbjct: 154 EEVIRLVEALQFVEEHGE 171

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea} Length = 240

 Score =  148 bits (377), Expect = 8e-47
 Identities = 53/78 (67%), Positives = 62/78 (79%)

Query: 19  DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
            GGLG +K PLL+D   +I+  YGV +E  G  LRGLFIID KGVLRQIT+NDLPVGRSV
Sbjct: 135 QGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSV 194

Query: 79  EEVLRLVKAFQFVDKHGE 96
           +E LRLV+AFQ+ DKHGE
Sbjct: 195 DETLRLVQAFQYTDKHGE 212

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C Length = 254

 Score =  149 bits (378), Expect = 9e-47
 Identities = 51/78 (65%), Positives = 63/78 (80%)

Query: 19  DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
            GGLG ++ PLL+D   +I+  YGV +E +G  LRGLFIID KG+LRQIT+NDLPVGRSV
Sbjct: 149 QGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSV 208

Query: 79  EEVLRLVKAFQFVDKHGE 96
           +E LRLV+AFQ+ DKHGE
Sbjct: 209 DETLRLVQAFQYTDKHGE 226

>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A* Length = 197

 Score =  147 bits (373), Expect = 1e-46
 Identities = 53/78 (67%), Positives = 61/78 (78%)

Query: 19  DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
           +GGLG L  PLLAD  + ++  YGVL    GI  RGLFIID KGVLRQITVNDLPVGRSV
Sbjct: 92  EGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSV 151

Query: 79  EEVLRLVKAFQFVDKHGE 96
           +E LRLV+AFQ+ D+HGE
Sbjct: 152 DEALRLVQAFQYTDEHGE 169

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae} Length = 216

 Score =  147 bits (374), Expect = 1e-46
 Identities = 49/78 (62%), Positives = 61/78 (78%)

Query: 19  DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
           +GGLG +  PLLAD    ++  YGVLIE  G+ LRGLFIID KGV+R IT+NDLPVGR+V
Sbjct: 110 EGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNV 169

Query: 79  EEVLRLVKAFQFVDKHGE 96
           +E LRLV+AFQ+ DK+G 
Sbjct: 170 DEALRLVEAFQWTDKNGT 187

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10 Length = 202

 Score =  147 bits (373), Expect = 1e-46
 Identities = 54/78 (69%), Positives = 59/78 (75%)

Query: 19  DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
            GGLG +  P+LAD  K I  SYGVL E  G+  RGLFIID K  LRQITVNDLPVGR V
Sbjct: 94  RGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDV 153

Query: 79  EEVLRLVKAFQFVDKHGE 96
           +E LRLVKAFQFV+KHGE
Sbjct: 154 DEALRLVKAFQFVEKHGE 171

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens} Length = 211

 Score =  147 bits (374), Expect = 1e-46
 Identities = 51/78 (65%), Positives = 63/78 (80%)

Query: 19  DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
            GGLG ++ PLL+D   +I+  YGV +E +G  LRGLFIID KG+LRQIT+NDLPVGRSV
Sbjct: 106 QGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSV 165

Query: 79  EEVLRLVKAFQFVDKHGE 96
           +E LRLV+AFQ+ DKHGE
Sbjct: 166 DETLRLVQAFQYTDKHGE 183

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10 Length = 220

 Score =  147 bits (374), Expect = 2e-46
 Identities = 50/78 (64%), Positives = 62/78 (79%)

Query: 19  DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
           +GGLG +   LL+D  K+I+  YGVL+E  G+ LRGLFIID  GV++ ++VNDLPVGRSV
Sbjct: 114 NGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSV 173

Query: 79  EEVLRLVKAFQFVDKHGE 96
           EE LRLVKAFQFV+ HGE
Sbjct: 174 EETLRLVKAFQFVEAHGE 191

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum} Length = 221

 Score =  143 bits (362), Expect = 9e-45
 Identities = 38/86 (44%), Positives = 57/86 (66%), Gaps = 2/86 (2%)

Query: 11  WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
           W  ++    GG+G++++ L++D  K+I+ +Y VL +     LRGLFIID  G +R  TVN
Sbjct: 107 WK-NMPIEKGGIGNVEFTLVSDINKDISKNYNVLYD-NSFALRGLFIIDKNGCVRHQTVN 164

Query: 71  DLPVGRSVEEVLRLVKAFQFVDKHGE 96
           DLP+GR+V+EVLR + +   VD  GE
Sbjct: 165 DLPIGRNVQEVLRTIDSIIHVDTSGE 190

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A Length = 213

 Score =  142 bits (359), Expect = 2e-44
 Identities = 32/86 (37%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 11  WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
           W        GG+G++K+ LL+D  K I+  Y VL +   + LR   +ID  G+++ + VN
Sbjct: 103 WK-KTPLAKGGIGNIKHTLLSDITKSISKDYNVLFDD-SVSLRAFVLIDMNGIVQHLLVN 160

Query: 71  DLPVGRSVEEVLRLVKAFQFVDKHGE 96
           +L +GRSV+E+LR++ A Q  +K+G+
Sbjct: 161 NLAIGRSVDEILRIIDAIQHHEKYGD 186

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 Length = 192

 Score =  141 bits (357), Expect = 2e-44
 Identities = 34/78 (43%), Positives = 54/78 (69%), Gaps = 1/78 (1%)

Query: 19  DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
            GG+G++K+ L++D  K IA SY VL     + LR   +ID +GV++ + VN+L +GRSV
Sbjct: 89  QGGIGNIKHTLISDISKSIARSYDVLFN-ESVALRAFVLIDKQGVVQHLLVNNLALGRSV 147

Query: 79  EEVLRLVKAFQFVDKHGE 96
           +E+LRL+ A Q  +K+G+
Sbjct: 148 DEILRLIDALQHHEKYGD 165

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10 Length = 198

 Score =  140 bits (356), Expect = 4e-44
 Identities = 35/86 (40%), Positives = 52/86 (60%), Gaps = 2/86 (2%)

Query: 11  WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN 70
           W  +     GG+G + +P++AD  K I+  Y VL E   I LRG F+ID    +R   +N
Sbjct: 84  WK-NTPVEKGGIGQVSFPMVADITKSISRDYDVLFE-EAIALRGAFLIDKNMKVRHAVIN 141

Query: 71  DLPVGRSVEEVLRLVKAFQFVDKHGE 96
           DLP+GR+ +E+LR+V A    ++HGE
Sbjct: 142 DLPLGRNADEMLRMVDALLHFEEHGE 167

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10 Length = 187

 Score =  138 bits (351), Expect = 2e-43
 Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 1/79 (1%)

Query: 19  DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
              +G ++Y ++ D  + I+  + VL E  G+  RG FIID  GV++ I +N   +GR  
Sbjct: 86  SPAVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDA 145

Query: 79  EEVLRLVKAFQFVDKH-GE 96
             ++  VKA Q+V ++ GE
Sbjct: 146 STLINKVKAAQYVRENPGE 164

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A Length = 186

 Score =  136 bits (346), Expect = 1e-42
 Identities = 22/79 (27%), Positives = 42/79 (53%), Gaps = 1/79 (1%)

Query: 19  DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
              +  +KY ++ D    +  ++  + E  G+  R  F++D +G+++ I V    +GR  
Sbjct: 85  SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDA 144

Query: 79  EEVLRLVKAFQFVDKH-GE 96
            ++LR +KA Q+V  H GE
Sbjct: 145 SDLLRKIKAAQYVAAHPGE 163

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10 Length = 195

 Score =  123 bits (310), Expect = 4e-37
 Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 5/78 (6%)

Query: 19  DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
              L  L +P+L+D K+E++ + GVL    G+  R  FI+D    ++ ++     VGR+V
Sbjct: 100 HNDLKTLPFPMLSDIKRELSQAAGVLNAD-GVADRVTFIVDPNNEIQFVSATAGSVGRNV 158

Query: 79  EEVLRLVKAFQFVDKHGE 96
           +EVLR++ A Q      E
Sbjct: 159 DEVLRVLDALQ----SDE 172

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A Length = 233

 Score =  123 bits (311), Expect = 6e-37
 Identities = 26/92 (28%), Positives = 43/92 (46%), Gaps = 6/92 (6%)

Query: 11  WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA------GIPLRGLFIIDTKGVL 64
           W EDVK   G  GD+ YP++AD  +E+A   G++           +  R +FII     L
Sbjct: 80  WSEDVKCLSGVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKL 139

Query: 65  RQITVNDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           +   +     GR+  E+LR++ + Q   +   
Sbjct: 140 KLSILYPATTGRNFSEILRVIDSLQLTAQKKV 171

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A Length = 220

 Score =  123 bits (310), Expect = 7e-37
 Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 7/92 (7%)

Query: 11  WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAG------IPLRGLFIIDTKGVL 64
           W+ED+K   G L   + P++ D  +E+A    ++ E         +  R LF I  +  +
Sbjct: 82  WIEDIKY-YGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKI 140

Query: 65  RQITVNDLPVGRSVEEVLRLVKAFQFVDKHGE 96
           +   +     GR+  E+LR++K+ Q       
Sbjct: 141 KATVLYPATTGRNAHEILRVLKSLQLTYTTPV 172

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10 Length = 224

 Score =  121 bits (306), Expect = 3e-36
 Identities = 19/94 (20%), Positives = 40/94 (42%), Gaps = 8/94 (8%)

Query: 11  WLEDVK--QGDGGLGDLKYPLLADFKKEIATSYGVLIESAG------IPLRGLFIIDTKG 62
           W +D+     +     L +P++ D  +E+A   G+L  +        +  R +F+     
Sbjct: 82  WSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDK 141

Query: 63  VLRQITVNDLPVGRSVEEVLRLVKAFQFVDKHGE 96
            L+   +     GR+ +E+LR+V + Q   +   
Sbjct: 142 KLKLSILYPATTGRNFDEILRVVISLQLTAEKRV 175

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A Length = 249

 Score =  119 bits (301), Expect = 3e-35
 Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 3/87 (3%)

Query: 11  WLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGI-PLRGLFIIDTKGVLRQITV 69
           W E +++   G+  + +P++AD +  +A   G+L   +    +RG+FI+D +GV+R +  
Sbjct: 84  WKEWIER-HIGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLY 141

Query: 70  NDLPVGRSVEEVLRLVKAFQFVDKHGE 96
             + +GR V+E+LR+VKA +  D    
Sbjct: 142 YPMELGRLVDEILRIVKALKLGDSLKR 168

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A Length = 160

 Score = 93.1 bits (232), Expect = 9e-26
 Identities = 20/69 (28%), Positives = 31/69 (44%), Gaps = 2/69 (2%)

Query: 23  GDLKYPLLADF--KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEE 80
               +PLL+DF     ++ +YGV  E AGI  RG F++D  G++R   +      R    
Sbjct: 91  SGFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRL 150

Query: 81  VLRLVKAFQ 89
               + A  
Sbjct: 151 WTDALAALT 159

>2ywn_A Peroxiredoxin-like protein; redox protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Sulfolobus tokodaii} PDB: 3hjp_A Length = 157

 Score = 59.5 bits (145), Expect = 9e-13
 Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 6/70 (8%)

Query: 24  DLKYPLLADFKKEIATSYGVLIESAGIP-----LRGLFIIDTKGVLRQITVNDLPVGRS- 77
            L + +L+D+ +E+   Y V  E   +P      R +F+ID +G +R   V+D P     
Sbjct: 86  KLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPP 145

Query: 78  VEEVLRLVKA 87
            +E+ ++VK+
Sbjct: 146 YDEIEKVVKS 155

>2cx4_A Bacterioferritin comigratory protein; oxidoreductase, antioxidant enzyme, reactive oxygen species, thioredoxin fold, structural genomics; 2.30A {Aeropyrum pernix} SCOP: c.47.1.10 PDB: 2cx3_A Length = 164

 Score = 59.2 bits (144), Expect = 1e-12
 Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 5/71 (7%)

Query: 24  DLKYPLLADFKKEIATSYGVLIESAG----IPLRGLFIIDTKGVLRQITVNDLPVGRS-V 78
            L + LL+D+ +E+   Y V  E       +  R +FI+   G +    V D P+     
Sbjct: 89  RLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDY 148

Query: 79  EEVLRLVKAFQ 89
           +EV+R      
Sbjct: 149 DEVVREANKIA 159

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} Length = 161

 Score = 49.1 bits (118), Expect = 8e-09
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 2/66 (3%)

Query: 24  DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR 83
            L + L++D  K+I   YG          R  F+ID KG++R I  + +     V E L+
Sbjct: 85  KLPFILVSDPDKKIRELYGAK-GFILP-ARITFVIDKKGIIRHIYNSQMNPANHVNEALK 142

Query: 84  LVKAFQ 89
            +K  +
Sbjct: 143 ALKQIK 148

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10 Length = 163

 Score = 44.9 bits (107), Expect = 3e-07
 Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 4/68 (5%)

Query: 23  GDLKYPLLADFK-KEIATSYGVLIESAGIPLRGLFIIDTKGVLR--QITVNDLPVGRSVE 79
           G     +L+D+        Y +LI    +  R +F++DT   +R  +  V+++    + E
Sbjct: 96  GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEY-VDNINSEPNFE 154

Query: 80  EVLRLVKA 87
             +   KA
Sbjct: 155 AAIAAAKA 162

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} Length = 166

 Score = 42.2 bits (100), Expect = 3e-06
 Identities = 10/44 (22%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 23  GDLKYPLLADFK-KEIATSYGVLIESAGIPLRGLFIIDTKGVLR 65
           G      L+D +      +YGV++E   +  R +F++D    + 
Sbjct: 99  GLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVV 142

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A Length = 175

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 6/74 (8%)

Query: 26  KYPLLADFKKEIATSYGVLIES---AGIPLRGLFIIDTKGVLR--QITVNDLPVGRSVEE 80
                + F+      YGV I     AG+  R + +I   G +   ++ V ++    + E 
Sbjct: 100 NVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTEL-VPEIAQEPNYEA 158

Query: 81  VLRLVKAFQFVDKH 94
            L  + A      H
Sbjct: 159 ALAALGATSGSHHH 172

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A Length = 167

 Score = 39.9 bits (94), Expect = 2e-05
 Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 1/41 (2%)

Query: 26  KYPLLADFK-KEIATSYGVLIESAGIPLRGLFIIDTKGVLR 65
           K   L+D +      ++GV I+   +  R +F++D  G + 
Sbjct: 101 KVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVV 141

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A Length = 163

 Score = 39.9 bits (94), Expect = 2e-05
 Identities = 16/73 (21%), Positives = 31/73 (42%), Gaps = 9/73 (12%)

Query: 24  DLKYPLLADFKKEIATSYGVLIE-------SAGIPLRGLFIIDTKGVLRQITVNDLPVGR 76
              +PL++D  + +  ++ V+ E         GI  R  F++  +G + Q     + V  
Sbjct: 91  GFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGI-ERSTFLLSPEGQVVQAWRK-VKVAG 148

Query: 77  SVEEVLRLVKAFQ 89
             + VL  +KA  
Sbjct: 149 HADAVLAALKAHA 161

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa} Length = 179

 Score = 40.0 bits (94), Expect = 2e-05
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 9/73 (12%)

Query: 24  DLKYPLLADFKKEIATSYGVLIE-------SAGIPLRGLFIIDTKGVLRQITVNDLPVGR 76
              +PL++D    +  ++ V+ E         GI  R  F+I     + +     + V  
Sbjct: 107 GFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGI-ERSTFLIGPTHRIVEAWRQ-VKVPG 164

Query: 77  SVEEVLRLVKAFQ 89
             EEVL  +KA  
Sbjct: 165 HAEEVLNKLKAHA 177

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus} Length = 171

 Score = 39.6 bits (93), Expect = 3e-05
 Identities = 21/70 (30%), Positives = 33/70 (47%), Gaps = 6/70 (8%)

Query: 23  GDLKYPLLADFKKEIATSYGVLIES---AGIPLRGLFIIDTKGVLR--QITVNDLPVGRS 77
                 + +DF+      YGVLI      GI  R +FIID +G +   Q+ V ++    +
Sbjct: 101 NIQNVTVASDFRYRDMEKYGVLIGEGALKGILARAVFIIDKEGKVAYVQL-VPEITEEPN 159

Query: 78  VEEVLRLVKA 87
            +EV+  VK 
Sbjct: 160 YDEVVNKVKE 169

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae} Length = 138

 Score = 38.0 bits (89), Expect = 8e-05
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 6/70 (8%)

Query: 3   FVDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKG 62
                 E    D K    GL     P+L D   ++  +YGV       P      ID +G
Sbjct: 62  SPGHKGEQSEADFKNWYKGLDYKNLPVLVDPSGKLLETYGVR----SYPT--QAFIDKEG 115

Query: 63  VLRQITVNDL 72
            L +     +
Sbjct: 116 KLVKTHPGFM 125

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP} Length = 152

 Score = 37.3 bits (87), Expect = 2e-04
 Identities = 15/83 (18%), Positives = 35/83 (42%), Gaps = 8/83 (9%)

Query: 4   VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGV 63
            D  +E W + ++  +      +  L  D  K++  SY ++    G P   + ++D +G 
Sbjct: 70  TDRREEDWKKAIE--EDKSYWNQVLLQKDDVKDVLESYCIV----GFP--HIILVDPEGK 121

Query: 64  LRQITVNDLPVGRSVEEVLRLVK 86
           +    +    +  +VE+ +   K
Sbjct: 122 IVAKELRGDDLYNTVEKFVNGAK 144

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron} Length = 159

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 9/66 (13%)

Query: 4   VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGV 63
            DE  E  L   K        + YPL  D   +I   Y +    AGI      +ID +G 
Sbjct: 76  RDEPLEKVLAFAKSTG-----VTYPLGLDPGADIFAKYAL--RDAGITR--NVLIDREGK 126

Query: 64  LRQITV 69
           + ++T 
Sbjct: 127 IVKLTR 132

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A Length = 151

 Score = 35.7 bits (83), Expect = 7e-04
 Identities = 13/84 (15%), Positives = 35/84 (41%), Gaps = 12/84 (14%)

Query: 4   VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGV 63
           V E        +K        + +P++ D  +++  +Y V    + +P    F+I+ +G 
Sbjct: 67  VGESKIAVHNFMKSYG-----VNFPVVLDTDRQVLDAYDV----SPLPT--TFLINPEGK 115

Query: 64  LRQITVNDLPVGRSVEEVLRLVKA 87
           + ++    +     + + + L+K 
Sbjct: 116 VVKVVTGTMT-ESMIHDYMNLIKP 138

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
3sbc_A	216	Peroxiredoxin TSA1; alpha-beta fold, peroxidase, c	99.93
3tue_A	219	Tryparedoxin peroxidase; thioredoxin fold, peroxir	99.92
3a2v_A	249	Probable peroxiredoxin; thioredoxin peroxidase, hy	99.75
4eo3_A	322	Bacterioferritin comigratory protein/NADH dehydro;	99.73
1xcc_A	220	1-Cys peroxiredoxin; unknown function, structural	99.73
1prx_A	224	HORF6; peroxiredoxin, hydrogen peroxide, redox reg	99.72
3tjj_A	254	Peroxiredoxin-4; thioredoxin fold, sulfenylation,	99.72
2v2g_A	233	Peroxiredoxin 6; oxidoreductase, antioxidant enzym	99.71
3qpm_A	240	Peroxiredoxin; oxidoreductase, thioredoxin fold, p	99.7
4gqc_A	164	Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, f	99.69
4g2e_A	157	Peroxiredoxin; redox protein, structural genomics,	99.67
1n8j_A	186	AHPC, alkyl hydroperoxide reductase C22 protein; p	99.67
1uul_A	202	Tryparedoxin peroxidase homologue; peroxiredoxin,	99.65
2i81_A	213	2-Cys peroxiredoxin; structural genomics consortiu	99.65
2pn8_A	211	Peroxiredoxin-4; thioredoxin, oxidoreductase, stru	99.64
1zye_A	220	Thioredoxin-dependent peroxide reductase; catenane	99.63
2c0d_A	221	Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, th	99.62
1qmv_A	197	Human thioredoxin peroxidase-B; peroxiredoxin, sul	99.61
1xiy_A	182	Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin	99.61
2h01_A	192	2-Cys peroxiredoxin; thioredoxin peroxidase, struc	99.61
3keb_A	224	Probable thiol peroxidase; structural genomics, AP	99.6
3mng_A	173	Peroxiredoxin-5, mitochondrial; peroxidase, PRXV,	99.6
3ztl_A	222	Thioredoxin peroxidase; oxidoreductase, reductase,	99.57
2xhf_A	171	Peroxiredoxin 5; oxidoreductase, antioxidant enzym	99.51
4f82_A	176	Thioredoxin reductase; structural genomics, niaid,	99.51
1we0_A	187	Alkyl hydroperoxide reductase C; peroxiredoxin, AH	99.5
3p7x_A	166	Probable thiol peroxidase; thioredoxin fold, oxido	99.49
1psq_A	163	Probable thiol peroxidase; structural genomics, NY	99.46
1zof_A	198	Alkyl hydroperoxide-reductase; decamer, toroide-sh	99.46
3drn_A	161	Peroxiredoxin, bacterioferritin comigratory prote	99.44
3ixr_A	179	Bacterioferritin comigratory protein; alpha beta p	99.39
2bmx_A	195	Alkyl hydroperoxidase C; peroxiredoxin, antioxidan	99.39
3uma_A	184	Hypothetical peroxiredoxin protein; nysgrc, PSI bi	99.37
3gkn_A	163	Bacterioferritin comigratory protein; BCP, PRX, at	99.37
1xvw_A	160	Hypothetical protein RV2238C/MT2298; thioredoxin f	99.36
2yzh_A	171	Probable thiol peroxidase; redox protein, antioxid	99.34
3zrd_A	200	Thiol peroxidase; oxidoreductase, 2Cys peroxiredox	99.32
1nm3_A	241	Protein HI0572; hybrid, peroxiredoxin, glutaredoxi	99.31
1tp9_A	162	Peroxiredoxin, PRX D (type II); oligomer, thioredo	99.3
1q98_A	165	Thiol peroxidase, TPX; structural genomics, NYSGXR	99.29
2pwj_A	171	Mitochondrial peroxiredoxin; alpha and beta protei	99.29
2jsy_A	167	Probable thiol peroxidase; solution structure, ant	99.23
1xvq_A	175	Thiol peroxidase; thioredoxin fold, structural gen	99.16
2wfc_A	167	Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidan	99.15
2a4v_A	159	Peroxiredoxin DOT5; yeast nuclear thiol peroxidase	99.08
3eyt_A	158	Uncharacterized protein SPOA0173; thioredoxin-like	98.99
2f9s_A	151	Thiol-disulfide oxidoreductase RESA; thioredoxin-l	98.97
3lor_A	160	Thiol-disulfide isomerase and thioredoxins; PSI, M	98.97
3kcm_A	154	Thioredoxin family protein; SGX, thioredoxin prote	98.96
3u5r_E	218	Uncharacterized protein; structural genomics, PSI-	98.91
2ywi_A	196	Hypothetical conserved protein; uncharacterized co	98.91
4evm_A	138	Thioredoxin family protein; structural genomics, n	98.89
3gl3_A	152	Putative thiol:disulfide interchange protein DSBE;	98.89
3raz_A	151	Thioredoxin-related protein; structural genomics,	98.84
1lu4_A	136	Soluble secreted antigen MPT53; thioredoxin-like f	98.84
2b5x_A	148	YKUV protein, TRXY; thioredoxin-like, oxidoreducta	98.83
2hyx_A	352	Protein DIPZ; thioredoxin fold, jelly-roll, struct	98.83
1xzo_A	174	BSSCO, hypothetical protein YPMQ; thioredoxin-like	98.82
3erw_A	145	Sporulation thiol-disulfide oxidoreductase A; thio	98.81
1jfu_A	186	Thiol:disulfide interchange protein TLPA; thioredo	98.81
3hdc_A	158	Thioredoxin family protein; ATCC53774, DSM 7210, ,	98.81
3kh7_A	176	Thiol:disulfide interchange protein DSBE; TRX-like	98.8
2cvb_A	188	Probable thiol-disulfide isomerase/thioredoxin; re	98.8
3ia1_A	154	THIO-disulfide isomerase/thioredoxin; oxidoreducta	98.78
2l5o_A	153	Putative thioredoxin; structural genomics, unknown	98.76
3lwa_A	183	Secreted thiol-disulfide isomerase; thioredoxin, P	98.75
3fw2_A	150	Thiol-disulfide oxidoreductase; structural genomic	98.74
2ggt_A	164	SCO1 protein homolog, mitochondrial; copper chaper	98.73
1zzo_A	136	RV1677; thioredoxin fold, structural genomics, PSI	98.71
2rli_A	171	SCO2 protein homolog, mitochondrial; copper protei	98.71
2k6v_A	172	Putative cytochrome C oxidase assembly protein; th	98.7
2b1k_A	168	Thiol:disulfide interchange protein DSBE; C-termin	98.69
1kng_A	156	Thiol:disulfide interchange protein CYCY; thioredo	98.69
4h86_A	199	Peroxiredoxin type-2; oxidoreductase; 2.00A {Sacch	98.68
3ewl_A	142	Uncharacterized conserved protein BF1870; alpha-be	98.64
2h30_A	164	Thioredoxin, peptide methionine sulfoxide reductas	98.64
3hcz_A	148	Possible thiol-disulfide isomerase; APC61559.2, cy	98.63
2lrn_A	152	Thiol:disulfide interchange protein; structural ge	98.62
3ha9_A	165	Uncharacterized thioredoxin-like protein; PSI, MCS	98.55
3fkf_A	148	Thiol-disulfide oxidoreductase; structural genomic	98.54
3or5_A	165	Thiol:disulfide interchange protein, thioredoxin p	98.54
4fo5_A	143	Thioredoxin-like protein; AHPC/TSA family protein,	98.52
3me7_A	170	Putative uncharacterized protein; electron transfe	98.45
2ls5_A	159	Uncharacterized protein; structural genomics, unkn	97.82
2b7k_A	200	SCO1 protein; metallochaperone, cytochrome C oxida	98.43
2lja_A	152	Putative thiol-disulfide oxidoreductase; structura	98.43
3eur_A	142	Uncharacterized protein; PSI2,MCSG, conserved prot	98.38
2lrt_A	152	Uncharacterized protein; structural genomics, thio	98.37
2vup_A	190	Glutathione peroxidase-like protein; oxidoreductas	98.35
2p5q_A	170	Glutathione peroxidase 5; thioredoxin fold, oxidor	98.34
2obi_A	183	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.32
2p31_A	181	CL683, glutathione peroxidase 7; thioredoxin fold,	98.28
2i3y_A	215	Epididymal secretory glutathione peroxidase; thior	98.28
3cmi_A	171	Peroxiredoxin HYR1; thioredoxin-like fold, oxidore	98.27
2r37_A	207	Glutathione peroxidase 3; plasma, structural genom	98.26
2gs3_A	185	PHGPX, GPX-4, phospholipid hydroperoxide glutathio	98.24
2v1m_A	169	Glutathione peroxidase; selenium, selenocysteine,	98.22
3dwv_A	187	Glutathione peroxidase-like protein; alpha beta, 3	98.13
3kij_A	180	Probable glutathione peroxidase 8; human PDI-perox	98.07
2f8a_A	208	Glutathione peroxidase 1; thioredoxin fold, struct	98.05
4hde_A	170	SCO1/SENC family lipoprotein; structural genomics,	97.92
2lus_A	143	Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carci	96.94
2ju5_A	154	Thioredoxin disulfide isomerase; protein, oxidored	97.7
2l57_A	126	Uncharacterized protein; structural genomics, unkn	97.45
2kuc_A	130	Putative disulphide-isomerase; structural genomics	97.43
1i5g_A	144	Tryparedoxin II; electron transport; HET: TS5; 1.4	97.32
2fwh_A	134	Thiol:disulfide interchange protein DSBD; thioredo	97.24
3fk8_A	133	Disulphide isomerase; APC61824.1, xylella fastidio	97.22
1o8x_A	146	Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrot	97.2
1o73_A	144	Tryparedoxin; electron transport, trypanosomatid,	97.05
2l5l_A	136	Thioredoxin; structural genomics, electron transpo	96.94
3s9f_A	165	Tryparedoxin; thioredoxin fold, disulfide reductas	96.86
3hxs_A	141	Thioredoxin, TRXP; electron transport; 2.00A {Bact	96.59
2voc_A	112	Thioredoxin; electron transport, homodimer, disulf	96.56
2i4a_A	107	Thioredoxin; acidophIle, disulfide exchange, oxido	96.38
3f9u_A	172	Putative exported cytochrome C biogenesis-related;	96.34
2trx_A	108	Thioredoxin; electron transport; 1.68A {Escherichi	96.29
1nsw_A	105	Thioredoxin, TRX; thermostability, electron transp	96.28
2qgv_A	140	Hydrogenase-1 operon protein HYAE; alpha-beta prot	96.26
2es7_A	142	Q8ZP25_salty, putative thiol-disulfide isomerase a	96.24
1thx_A	115	Thioredoxin, thioredoxin 2; oxido-reductase, elect	96.23
1oaz_A	123	Thioredoxin 1; immune system, antibody/complex, an	96.21
2pu9_C	111	TRX-F, thioredoxin F-type, chloroplast; protein-pr	96.18
3tco_A	109	Thioredoxin (TRXA-1); disulfide oxidoreductase, ox	96.15
1w4v_A	119	Thioredoxin, mitochondrial; antioxidant enzyme, mi	96.14
1dby_A	107	Chloroplast thioredoxin M CH2; thioredoxin CH2, ch	96.14
2yzu_A	109	Thioredoxin; redox protein, electron transport, st	96.12
2e0q_A	104	Thioredoxin; electron transport; 1.49A {Sulfolobus	96.11
2o8v_B	128	Thioredoxin 1; disulfide crosslinked complex, oxid	96.0
2dlx_A	153	UBX domain-containing protein 7; UAS domain, prote	95.91
3die_A	106	Thioredoxin, TRX; electron transport, SWAP domain,	95.91
2l6c_A	110	Thioredoxin; oxidoreductase; NMR {Desulfovibrio vu	95.88
4euy_A	105	Uncharacterized protein; structural genomics, PSI-	95.7
3emx_A	135	Thioredoxin; structural genomics, oxidoreductase,	95.7
3ul3_B	128	Thioredoxin, thioredoxin-2; PTEX, oxidoreductase;	95.59
3zzx_A	105	Thioredoxin; oxidoreductase; 1.88A {Litopenaeus va	95.55
1t00_A	112	Thioredoxin, TRX; redox regulation, multifunction	95.48
1sen_A	164	Thioredoxin-like protein P19; endoplasmic reticulu	95.47
2lst_A	130	Thioredoxin; structural genomics, NEW YORK structu	94.44
1faa_A	124	Thioredoxin F; electron transport; 1.85A {Spinacia	95.4
1x5e_A	126	Thioredoxin domain containing protein 1; TMX, TXND	95.38
3qfa_C	116	Thioredoxin; protein-protein complex, rossmann fol	95.36
1fb6_A	105	Thioredoxin M; electron transport; 2.10A {Spinacia	95.35
1x5d_A	133	Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC	95.35
2ppt_A	155	Thioredoxin-2; thiredoxin, zinc finger, oxidoreduc	95.33
3gnj_A	111	Thioredoxin domain protein; APC92103, STR genomics	95.32
1ep7_A	112	Thioredoxin CH1, H-type; electron transport; 2.10A	95.26
3f3q_A	109	Thioredoxin-1; His TAG, electron transport, cytopl	95.23
2dj1_A	140	Protein disulfide-isomerase A4; protein ERP-72, ER	95.12
1v98_A	140	Thioredoxin; oxidoreductase, structural genomics,	95.11
2wz9_A	153	Glutaredoxin-3; protein binding; 1.55A {Homo sapie	95.05
2dml_A	130	Protein disulfide-isomerase A6; thioredoxin domain	95.02
3p2a_A	148	Thioredoxin 2, putative thioredoxin-like protein;	94.96
3cxg_A	133	Putative thioredoxin; malaria, structural GEN oxid	94.93
2qsi_A	137	Putative hydrogenase expression/formation protein;	94.93
1xwb_A	106	Thioredoxin; dimerization, redox regulation, THI X	94.91
1xfl_A	124	Thioredoxin H1; AT3G51030, structural genomics, pr	94.83
3d22_A	139	TRXH4, thioredoxin H-type; electron transport, cyt	94.81
3uvt_A	111	Thioredoxin domain-containing protein 5; thioredox	94.78
2oe3_A	114	Thioredoxin-3; electron transport, alpha/beta sand	94.51
3m9j_A	105	Thioredoxin; oxidoreductase; 1.10A {Homo sapiens}	94.47
1syr_A	112	Thioredoxin; SGPP, structural genomics, PSI, prote	94.41
3gix_A	149	Thioredoxin-like protein 4B; PRE-mRNA splicing, TX	94.4
3hz4_A	140	Thioredoxin; NYSGXRC, PSI-II, reduced form, protei	94.4
2vim_A	104	Thioredoxin, TRX; thioredoxin fold, oxidoreductase	94.39
2xc2_A	117	Thioredoxinn; oxidoreductase, protein disulfide re	94.35
2i1u_A	121	Thioredoxin, TRX, MPT46; redox protein, electron t	94.27
2vlu_A	122	Thioredoxin, thioredoxin H isoform 2.; oxidoreduct	94.22
2j23_A	121	Thioredoxin; immune protein, autoreactivity, cross	94.2
1r26_A	125	Thioredoxin; redox-active disulfide, electron tran	94.07
2vm1_A	118	Thioredoxin, thioredoxin H isoform 1.; oxidoreduct	93.91
3d6i_A	112	Monothiol glutaredoxin-3; thioredoxin-like, electr	93.87
1ti3_A	113	Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Popul	93.71
1gh2_A	107	Thioredoxin-like protein; redox-active center, ele	93.69
2f51_A	118	Thioredoxin; electron transport; 1.90A {Trichomona	93.58
2yj7_A	106	LPBCA thioredoxin; oxidoreductase; 1.65A {Syntheti	92.59
3ira_A	173	Conserved protein; methanosarcina mazei,structural	93.45
3ph9_A	151	Anterior gradient protein 3 homolog; thioredoxin f	93.43
1nho_A	85	Probable thioredoxin; beta sheet, alpha helix, oxi	93.26
3h79_A	127	Thioredoxin-like protein; thioredoxin fold, cataly	93.26
2dbc_A	135	PDCL2, unnamed protein product; phosducin-like pro	93.2
3apq_A	210	DNAJ homolog subfamily C member 10; thioredoxin fo	93.03
1zma_A	118	Bacterocin transport accessory protein; alpha-beta	92.83
1mek_A	120	Protein disulfide isomerase; electron transport, r	92.77
3q6o_A	244	Sulfhydryl oxidase 1; protein disulfide isomerase,	92.49
3dxb_A	222	Thioredoxin N-terminally fused to PUF60(UHM); spli	92.41
1qgv_A	142	Spliceosomal protein U5-15KD; snRNP, thioredoxin,	91.87
1a8l_A	226	Protein disulfide oxidoreductase; PDI, thioredoxin	91.8
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	91.51
3aps_A	122	DNAJ homolog subfamily C member 10; thioredoxin fo	90.86
1fo5_A	85	Thioredoxin; disulfide oxidoreductase, structural	90.6
3dml_A	116	Putative uncharacterized protein; thioredoxin, oxi	89.61
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	89.28
3t58_A	519	Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.	89.12
2dj3_A	133	Protein disulfide-isomerase A4; protein ERP-72, ER	86.62
2av4_A	160	Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECI	84.38
1v58_A	241	Thiol:disulfide interchange protein DSBG; reduced	84.33
2djk_A	133	PDI, protein disulfide-isomerase; thioredoxin fold	83.57
2hls_A	243	Protein disulfide oxidoreductase; thioredoxin fold	83.08
1sji_A	350	Calsequestrin 2, calsequestrin, cardiac muscle iso	83.0
1ilo_A	77	Conserved hypothetical protein MTH895; beta-alpha-	82.52
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	81.87
1z6n_A	167	Hypothetical protein PA1234; alpha-beta-alpha sand	80.89
1wmj_A	130	Thioredoxin H-type; structural genomics, program f	80.66
3idv_A	241	Protein disulfide-isomerase A4; thioredoxin-like f	80.14

>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.8e-26  Score=163.49  Aligned_cols=97  Identities=52%  Similarity=0.859  Sum_probs=88.0

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      .+++|++|++.. +..+++.+++||||||++++++++||++.++.|++.|+|||||++|+|+++++++.+.+||++|+|+
T Consensus        96 s~~sh~aw~~~~-~~~~~~~~l~fpllsD~~~~vak~YGv~~~~~g~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr  174 (216)
T 3sbc_A           96 SEYSLLAWTNIP-RKEGGLGPINIPLLADTNHSLSRDYGVLIEEEGVALRGLFIIDPKGVIRHITINDLPVGRNVDEALR  174 (216)
T ss_dssp             CHHHHHHHHTSC-GGGTCCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHH
T ss_pred             chhhHHHHHHHH-HHhCCccCcccceEeCCCCHHHHHcCCeeccCCceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHH
Confidence            468999999653 3335677899999999999999999999888899999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhcCCcccCC
Q psy13875         84 LVKAFQFVDKHGEGSKRV  101 (105)
Q Consensus        84 ~l~~l~~~~~~~~~~~~~  101 (105)
                      .|++||..+++|++||+-
T Consensus       175 ~l~AlQ~~~~~~~~~Pa~  192 (216)
T 3sbc_A          175 LVEAFQWTDKNGTVLPCN  192 (216)
T ss_dssp             HHHHHHHHHHHCCBBCTT
T ss_pred             HHHHhhhHhhcCCCcCCC
Confidence            999999999999999874

>3tue_A Tryparedoxin peroxidase; thioredoxin fold, peroxiredoxin, oxidoreductase; 3.00A {Leishmania major} PDB: 1e2y_A

Probab=99.92  E-value=4.4e-25  Score=159.20  Aligned_cols=96  Identities=59%  Similarity=0.938  Sum_probs=81.2

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      -+++|++|+++... .+++.+++||||||++++|+++||++.+..|++.|+|||||++|+|+++++++...+||++|+|+
T Consensus       100 s~~sh~~w~~~~~~-~~~~~~l~fpllsD~~~~va~~yGv~~~~~g~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~~EvLr  178 (219)
T 3tue_A          100 SEYAHLQWTLQDRK-KGGLGTMAIPILADKTKNIARSYGVLEESQGVAYRGLFIIDPHGMLRQITVNDMPVGRSVEEVLR  178 (219)
T ss_dssp             CHHHHHHHHHSCGG-GTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHH
T ss_pred             chhhHHHHhhhhHH-hcCccccccccccCcccHHHHHcCCcccCCCeeEEEEEEECCCCeEEEEEEecCCCCCCHHHHHH
Confidence            36899999965332 24556899999999999999999999887899999999999999999999989999999999999


Q ss_pred             HHHhhhhhhhcCCcccC
Q psy13875         84 LVKAFQFVDKHGEGSKR  100 (105)
Q Consensus        84 ~l~~l~~~~~~~~~~~~  100 (105)
                      .|++||..+++|++||+
T Consensus       179 ~l~aLQ~~~~~~~~~Pa  195 (219)
T 3tue_A          179 LLEAFQFVEKHGEVCPA  195 (219)
T ss_dssp             HHHHHHHHHHC------
T ss_pred             HHHHhhhHHhcCCCcCC
Confidence            99999999999999986

>3a2v_A Probable peroxiredoxin; thioredoxin peroxidase, hydrogen peroxide, antioxidant, oxidoreductase, redox-active center; 1.65A {Aeropyrum pernix} PDB: 1x0r_A 2zct_A 2nvl_A 2e2g_A 2cv4_A* 3a5w_A 2e2m_A 3a2x_A 3a2w_A

Probab=99.75  E-value=7.5e-18  Score=123.04  Aligned_cols=94  Identities=29%  Similarity=0.535  Sum_probs=82.1

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCc-cceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGI-PLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~-~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      .++|++|++..... .+. +++||+++|.+++++++||+..+..|. +.|++||||++|+|+++++++.+.+++.+++++
T Consensus        78 ~~~~~~w~~~~~~~-~~~-~i~fPil~D~~~~ia~~ygv~~~~~g~~~~p~~fIID~dG~I~~~~~~~~~~gr~~~Ellr  155 (249)
T 3a2v_A           78 VFSHIKWKEWIERH-IGV-RIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILR  155 (249)
T ss_dssp             HHHHHHHHHHHHHH-TCC-CCCSCEEECTTSHHHHHHTCCCTTCSSSCCEEEEEECTTSBEEEEEEECTTBCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHh-cCC-CCceeEEECCchHHHHHhCCccccCCCcccceEEEECCCCeEEEEEecCCcccchhHHHHH
Confidence            57899999765332 223 789999999999999999998765565 789999999999999999998888899999999


Q ss_pred             HHHhhhhhhhcCCcccC
Q psy13875         84 LVKAFQFVDKHGEGSKR  100 (105)
Q Consensus        84 ~l~~l~~~~~~~~~~~~  100 (105)
                      .|++||..+++|++||+
T Consensus       156 ~I~alq~~~~~~~~~Pa  172 (249)
T 3a2v_A          156 IVKALKLGDSLKRAVPA  172 (249)
T ss_dssp             HHHHHHHHHHHTCBBCT
T ss_pred             HHHHHHhccccCccCCC
Confidence            99999999999999987

>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}

Probab=99.73  E-value=9e-18  Score=126.18  Aligned_cols=76  Identities=28%  Similarity=0.301  Sum_probs=67.7

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      .+++|++|+++.        +++||+|||++++++++||+...  |.+.|+|||||++|+|+++|. .+....|++|+|+
T Consensus        64 ~~~~~~~f~~~~--------~l~fp~l~D~~~~v~~~ygv~~~--~~~~r~tfiId~~G~i~~~~~-~v~~~~h~~~~l~  132 (322)
T 4eo3_A           64 SVEALKRFKEKN--------DLKVTLLSDPEGILHEFFNVLEN--GKTVRSTFLIDRWGFVRKEWR-RVKVEGHVQEVKE  132 (322)
T ss_dssp             CHHHHHHHHHHH--------TCCSEEEECTTCHHHHHTTCEET--TEECCEEEEECTTSBEEEEEE-SCCSTTHHHHHHH
T ss_pred             CHHHHHHHHHhh--------CCceEEEEcCchHHHHhcCCCCC--CcCccEEEEECCCCEEEEEEe-CCCccccHHHHHH
Confidence            468999999873        78999999999999999999843  667899999999999999997 4677889999999


Q ss_pred             HHHhhhh
Q psy13875         84 LVKAFQF   90 (105)
Q Consensus        84 ~l~~l~~   90 (105)
                      .|++++.
T Consensus       133 ~~~~~~~  139 (322)
T 4eo3_A          133 ALDRLIE  139 (322)
T ss_dssp             HHHHHHH
T ss_pred             HHhhhch
Confidence            9999975

>1xcc_A 1-Cys peroxiredoxin; unknown function, structural genomics, structural genomics consortium, SGC; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10 PDB: 3tb2_A

Probab=99.73  E-value=8.1e-18  Score=120.11  Aligned_cols=95  Identities=23%  Similarity=0.432  Sum_probs=78.7

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCcccc----CC--ccceeEEEECCCCCEEEEEeccCCCCCCH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIES----AG--IPLRGLFIIDTKGVLRQITVNDLPVGRSV   78 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~----~G--~~~ratfiID~~G~V~~~~~~~~~~~~~~   78 (105)
                      .++|++|++++...-++ .+++||+++|.+++++++||+..+.    .|  .+.|++||||++|+|++++.++.+.+++.
T Consensus        76 ~~~~~~~~~~i~~~~~~-~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~flID~~G~I~~~~~~~~~~g~~~  154 (220)
T 1xcc_A           76 KESHDKWIEDIKYYGKL-NKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNA  154 (220)
T ss_dssp             HHHHHHHHHHHHHHHTC-SCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCH
T ss_pred             HHHHHHHHHHHHHHhcC-CCCcceeEECchhHHHHHhCCCCcccccCCCCCcccceEEEECCCCEEEEEEecCCCCCCCH
Confidence            56899999754321001 3789999999999999999997542    12  46899999999999999999888778999


Q ss_pred             HHHHHHHHhhhhhhhcCCcccC
Q psy13875         79 EEVLRLVKAFQFVDKHGEGSKR  100 (105)
Q Consensus        79 ~eil~~l~~l~~~~~~~~~~~~  100 (105)
                      +++++.|++||..+++|++||+
T Consensus       155 ~ell~~i~~lq~~~~~~~~~p~  176 (220)
T 1xcc_A          155 HEILRVLKSLQLTYTTPVATPV  176 (220)
T ss_dssp             HHHHHHHHHHHHHHHSSEEBCT
T ss_pred             HHHHHHHHHHHhhhcCCcccCC
Confidence            9999999999999999999984

>1prx_A HORF6; peroxiredoxin, hydrogen peroxide, redox regulation, cellular signaling, antioxidant; 2.00A {Homo sapiens} SCOP: c.47.1.10

Probab=99.72  E-value=2.4e-17  Score=117.92  Aligned_cols=95  Identities=22%  Similarity=0.410  Sum_probs=79.7

Q ss_pred             hHHHHHHHHhhhcCCCCC---CCCCceEEeeCcchHHhhhCCcccc----CC--ccceeEEEECCCCCEEEEEeccCCCC
Q psy13875          5 DEGDEVWLEDVKQGDGGL---GDLKYPLLADFKKEIATSYGVLIES----AG--IPLRGLFIIDTKGVLRQITVNDLPVG   75 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~---~~l~fpllsD~~~~vak~ygv~~~~----~G--~~~ratfiID~~G~V~~~~~~~~~~~   75 (105)
                      .++|++|++++... .++   .+++||+++|.+++++++||+..+.    .|  ++.|++||||++|+|++++.++...+
T Consensus        76 ~~~~~~~~~~i~~~-~~~~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~g  154 (224)
T 1prx_A           76 VEDHLAWSKDINAY-NSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTG  154 (224)
T ss_dssp             HHHHHHHHHHHHHH-TTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBC
T ss_pred             HHHHHHHHHHHHHh-hCcccccCcCcceeecCchHHHHHhCCCCcccccCCCccccceEEEEECCCCEEEEEEecCCCCC
Confidence            46899999864332 222   3789999999999999999997542    12  46899999999999999999888778


Q ss_pred             CCHHHHHHHHHhhhhhhhcCCcccC
Q psy13875         76 RSVEEVLRLVKAFQFVDKHGEGSKR  100 (105)
Q Consensus        76 ~~~~eil~~l~~l~~~~~~~~~~~~  100 (105)
                      ++.+++++.|++||..++++++||+
T Consensus       155 r~~~eil~~i~~l~~~~~~~~~~p~  179 (224)
T 1prx_A          155 RNFDEILRVVISLQLTAEKRVATPV  179 (224)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCEEBCT
T ss_pred             CCHHHHHHHHHHHHhhccCCcCCCC
Confidence            9999999999999999999999984

>3tjj_A Peroxiredoxin-4; thioredoxin fold, sulfenylation, endoplasmic reticulum, oxidoreductase; HET: CSO; 1.91A {Homo sapiens} PDB: 3tjk_A 3tjb_A 3tjf_A 3tjg_A 3tkq_A 3tkp_A 3tks_A 3tkr_A 3tks_C

Probab=99.72  E-value=2.6e-17  Score=120.06  Aligned_cols=95  Identities=55%  Similarity=0.976  Sum_probs=78.7

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      +++|++|+++..+ ++++.+++||+++|.+++++++||+..+..|++.|++||||++|+|+++++++...+++.+++++.
T Consensus       136 ~~~~~~~~~~~~~-~~g~~~~~fp~l~D~~~~va~~ygv~~~~~g~~~p~tflID~~G~I~~~~~~~~~~~~~~~eil~~  214 (254)
T 3tjj_A          136 QFTHLAWINTPRR-QGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRL  214 (254)
T ss_dssp             HHHHHHHHTSCGG-GTSCCSCSSCEEECTTSHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHH-hcCCcccccceeeCcHHHHHHHcCCccccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHH
Confidence            5789999975322 244557899999999999999999987666778899999999999999999888888999999999


Q ss_pred             HHhhhhhhhcCCcccC
Q psy13875         85 VKAFQFVDKHGEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~~~~~~~  100 (105)
                      |++++..++++++|+.
T Consensus       215 L~alq~~~~~~~~cp~  230 (254)
T 3tjj_A          215 VQAFQYTDKHGEVAPA  230 (254)
T ss_dssp             HHHHHHHHHHC-----
T ss_pred             HHhhccccccCccccC
Confidence            9999999999999875

>2v2g_A Peroxiredoxin 6; oxidoreductase, antioxidant enzymes; 1.60A {Arenicola marina} PDB: 2v32_A 2v41_A

Probab=99.71  E-value=2.4e-17  Score=119.05  Aligned_cols=95  Identities=27%  Similarity=0.507  Sum_probs=78.5

Q ss_pred             hHHHHHHHHhhhcCCCCCC-CCCceEEeeCcchHHhhhCCcccc----CC--ccceeEEEECCCCCEEEEEeccCCCCCC
Q psy13875          5 DEGDEVWLEDVKQGDGGLG-DLKYPLLADFKKEIATSYGVLIES----AG--IPLRGLFIIDTKGVLRQITVNDLPVGRS   77 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~-~l~fpllsD~~~~vak~ygv~~~~----~G--~~~ratfiID~~G~V~~~~~~~~~~~~~   77 (105)
                      +++|++|++.+.... +.. +++||+++|.+++++++||+..+.    .|  ++.|++||||++|+|+++++++...+++
T Consensus        74 ~~~~~~~~~~i~~~~-~~~~~~~fpil~D~~~~va~~ygv~~~~~~~~~g~~~~~p~~fiID~~G~I~~~~~~~~~~gr~  152 (233)
T 2v2g_A           74 VADHKEWSEDVKCLS-GVKGDMPYPIIADETRELAVKLGMVDPDERTSTGMPLTCRAVFIIGPDKKLKLSILYPATTGRN  152 (233)
T ss_dssp             HHHHHHHHHHHHHHH-TCCSSCSSCEEECTTCHHHHHTTCEEEEEECTTCCEEECEEEEEECTTSBEEEEEEECTTBCCC
T ss_pred             HHHHHHHHHHHHHhh-CcccCCceEEEECChHHHHHHhCCcCcccccCCCcccccceEEEECCCCEEEEEEecCCCCCCC
Confidence            578999998542210 111 679999999999999999997532    12  4689999999999999999988878899


Q ss_pred             HHHHHHHHHhhhhhhhcCCcccC
Q psy13875         78 VEEVLRLVKAFQFVDKHGEGSKR  100 (105)
Q Consensus        78 ~~eil~~l~~l~~~~~~~~~~~~  100 (105)
                      .+++++.|++||..++++++||+
T Consensus       153 ~~eilr~l~~Lq~~~~~~~~~p~  175 (233)
T 2v2g_A          153 FSEILRVIDSLQLTAQKKVATPA  175 (233)
T ss_dssp             HHHHHHHHHHHHHHHHSSEEBCT
T ss_pred             HHHHHHHHHHHHhhccCCccCCC
Confidence            99999999999999999999984

>3qpm_A Peroxiredoxin; oxidoreductase, thioredoxin fold, peroxidase; 1.90A {Larimichthys crocea}

Probab=99.70  E-value=7.7e-17  Score=116.36  Aligned_cols=95  Identities=57%  Similarity=0.957  Sum_probs=82.3

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++++++|+++..+ .+++.+++||+++|.+++++++||+..+..|+..|++||||++|+|++++.++...+++.+++++.
T Consensus       122 ~~~~~~~~~~~~~-~~~~~~~~fp~l~D~~~~v~~~ygv~~~~~g~~~p~~flID~~G~I~~~~~~~~~~~~~~~eil~~  200 (240)
T 3qpm_A          122 QFTHLAWIITPRK-QGGLGPMKIPLLSDLTHQISKDYGVYLEDQGHTLRGLFIIDEKGVLRQITMNDLPVGRSVDETLRL  200 (240)
T ss_dssp             HHHHHHHHHSCGG-GTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHh-hcCCCCCceeEEeCchHHHHHHhCCccccCCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHH
Confidence            5688999976432 234457899999999999999999987666778899999999999999999888778899999999


Q ss_pred             HHhhhhhhhcCCcccC
Q psy13875         85 VKAFQFVDKHGEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~~~~~~~  100 (105)
                      |++++..+++|++|+.
T Consensus       201 l~~lq~~~~~~~~cp~  216 (240)
T 3qpm_A          201 VQAFQYTDKHGEVCPA  216 (240)
T ss_dssp             HHHHHHHHHHSCBBCT
T ss_pred             HHHhhhhhhcCCccCC
Confidence            9999999888988876

>4gqc_A Thiol peroxidase, peroxiredoxin Q; CXXXXC motif, fully folded, locally unfolded, peroxide, DTT, structural genomics, riken; 2.00A {Aeropyrum pernix} PDB: 2cx3_A 2cx4_A 4gqf_A

Probab=99.69  E-value=1.2e-16  Score=108.97  Aligned_cols=78  Identities=23%  Similarity=0.381  Sum_probs=65.6

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC----CccceeEEEECCCCCEEEEEeccCCC-CCCH
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA----GIPLRGLFIIDTKGVLRQITVNDLPV-GRSV   78 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~----G~~~ratfiID~~G~V~~~~~~~~~~-~~~~   78 (105)
                      .++++++|+++        .+++||+|+|++++++++||+..+..    +++.|+|||||++|+|++++++.... .+++
T Consensus        77 ~~~~~~~~~~~--------~~~~fp~l~D~~~~v~~~ygv~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~  148 (164)
T 4gqc_A           77 SPWCLKKFKDE--------NRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDY  148 (164)
T ss_dssp             CHHHHHHHHHH--------TTCCSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSCTTCCCCH
T ss_pred             CHHHHHHHHHh--------cCcccceeecCchHHHHHcCCcccccccCcCCeeeEEEEECCCCEEEEEEEeCCCCCCCCH
Confidence            36789999987        27899999999999999999976432    25689999999999999999976544 4589


Q ss_pred             HHHHHHHHhhh
Q psy13875         79 EEVLRLVKAFQ   89 (105)
Q Consensus        79 ~eil~~l~~l~   89 (105)
                      +++|+.|++|.
T Consensus       149 ~eil~~l~~l~  159 (164)
T 4gqc_A          149 DEVVREANKIA  159 (164)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99999998875

>4g2e_A Peroxiredoxin; redox protein, structural genomics, NPPSFA, national project protein structural and functional analyses; 1.40A {Sulfolobus tokodaii} PDB: 2ywn_A 3hjp_A

Probab=99.67  E-value=3e-16  Score=105.92  Aligned_cols=77  Identities=26%  Similarity=0.498  Sum_probs=64.9

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCC-----ccceeEEEECCCCCEEEEEeccCCC-CCCH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAG-----IPLRGLFIIDTKGVLRQITVNDLPV-GRSV   78 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G-----~~~ratfiID~~G~V~~~~~~~~~~-~~~~   78 (105)
                      ++++++|+++.        +++||+|+|.+++++++||+.....+     ++.|+|||||++|+|+++++++... ++++
T Consensus        75 ~~~~~~~~~~~--------~~~~p~l~D~~~~v~~~ygv~~~~~~~~~~~~~~p~tflID~~G~I~~~~~~~~~~~~~~~  146 (157)
T 4g2e_A           75 PFSNKAFKEHN--------KLNFTILSDYNREVVKKYNVAWEFPALPGYVLAKRAVFVIDKEGKVRYKWVSDDPTKEPPY  146 (157)
T ss_dssp             HHHHHHHHHHT--------TCCSEEEECTTSHHHHHTTCEEECTTSTTCEEECEEEEEECTTSBEEEEEEESSTTCCCCH
T ss_pred             hhHHHHHHHHc--------CCcEEEEEcCCcHHHHHcCCccccccCCCcceeeeeEEEECCCCEEEEEEECCCCCCCCCH
Confidence            67899999872        78999999999999999999764332     4689999999999999999986443 4689


Q ss_pred             HHHHHHHHhhh
Q psy13875         79 EEVLRLVKAFQ   89 (105)
Q Consensus        79 ~eil~~l~~l~   89 (105)
                      ++++++|++|.
T Consensus       147 ~eil~~l~~Ls  157 (157)
T 4g2e_A          147 DEIEKVVKSLS  157 (157)
T ss_dssp             HHHHHHHHHTC
T ss_pred             HHHHHHHHHhC
Confidence            99999999873

>1n8j_A AHPC, alkyl hydroperoxide reductase C22 protein; peroxiredoxin, decamer, antioxidant, peroxidase, AHPF, oxidoreductase; 2.17A {Salmonella typhimurium} SCOP: c.47.1.10 PDB: 1yep_A 1yf1_A 1yf0_A 1yex_A 3emp_A

Probab=99.67  E-value=4.1e-16  Score=107.84  Aligned_cols=92  Identities=25%  Similarity=0.521  Sum_probs=78.3

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++++++|+++.    +++.+++||+++|.+++++++||+.....|+..|++||||++|+|++++.+....+++.+++++.
T Consensus        75 ~~~~~~~~~~~----~~~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~~l~~~  150 (186)
T 1n8j_A           75 HFTHKAWHSSS----ETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLRK  150 (186)
T ss_dssp             HHHHHHHHHHC----TTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHH
T ss_pred             HHHHHHHHHHc----CcccCCceeEEECCchHHHHHhCCccCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHH
Confidence            56789999773    23337899999999999999999986544666899999999999999999876667789999999


Q ss_pred             HHhhhhhhhc-CCcccC
Q psy13875         85 VKAFQFVDKH-GEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~-~~~~~~  100 (105)
                      |++|+..+++ +++||.
T Consensus       151 l~~l~~~~~~p~~~~p~  167 (186)
T 1n8j_A          151 IKAAQYVAAHPGEVCPA  167 (186)
T ss_dssp             HHHHHHHHHSTTCBBCT
T ss_pred             HHHHHHHhhcCCCccCC
Confidence            9999988888 899875

>1uul_A Tryparedoxin peroxidase homologue; peroxiredoxin, oxidoreductase; 2.8A {Trypanosoma cruzi} SCOP: c.47.1.10

Probab=99.65  E-value=9.6e-16  Score=106.77  Aligned_cols=95  Identities=58%  Similarity=0.893  Sum_probs=81.0

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++++++|+++.... +++.+++||+++|.+++++++||+.....|...|++||||++|+|++++.+....+++.+++++.
T Consensus        81 ~~~~~~~~~~~~~~-~~~~~~~~p~l~D~~~~~~~~ygv~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~ell~~  159 (202)
T 1uul_A           81 EYSHLAWTSIERKR-GGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRL  159 (202)
T ss_dssp             HHHHHHHHHSCGGG-TCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhh-CCCCCCceeEEECCchHHHHHcCCccCCCCceeeEEEEECCCCEEEEEEeCCCCCCCCHHHHHHH
Confidence            46789999763221 34557899999999999999999986655767999999999999999999887777899999999


Q ss_pred             HHhhhhhhhcCCcccC
Q psy13875         85 VKAFQFVDKHGEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~~~~~~~  100 (105)
                      |++|+...+++++||.
T Consensus       160 l~~l~~~~~~~~~~p~  175 (202)
T 1uul_A          160 VKAFQFVEKHGEVCPA  175 (202)
T ss_dssp             HHHHHHHHHHSCBBCT
T ss_pred             HHHhhhhhhcCCccCC
Confidence            9999988888999886

>2i81_A 2-Cys peroxiredoxin; structural genomics consortium, SGC, oxidoreductase; 2.45A {Plasmodium vivax sai-1} PDB: 2h66_A

Probab=99.65  E-value=8.8e-16  Score=108.64  Aligned_cols=94  Identities=34%  Similarity=0.663  Sum_probs=79.7

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++++++|+++..+ .+++.+++||+++|.+++++++||+.. +.|+..|++||||++|+|++++.+....+++.+++++.
T Consensus        97 ~~~~~~~~~~~~~-~~g~~~~~fp~l~D~~~~~~~~ygv~~-~~g~~~p~~~lID~~G~i~~~~~~~~~~~~~~~ell~~  174 (213)
T 2i81_A           97 KYTHLAWKKTPLA-KGGIGNIKHTLLSDITKSISKDYNVLF-DDSVSLRAFVLIDMNGIVQHLLVNNLAIGRSVDEILRI  174 (213)
T ss_dssp             HHHHHHHHSSCGG-GTCCCSCSSEEEECTTSHHHHHTTCEE-TTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHh-hCCccCCCceEEECCchHHHHHhCCcc-ccCCcccEEEEECCCCEEEEEEecCCCCCCCHHHHHHH
Confidence            5688999976322 134557899999999999999999986 34667899999999999999999877777899999999


Q ss_pred             HHhhhhhhhcCCcccC
Q psy13875         85 VKAFQFVDKHGEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~~~~~~~  100 (105)
                      |++++..++++++|+.
T Consensus       175 l~~l~~~~~~~~~cp~  190 (213)
T 2i81_A          175 IDAIQHHEKYGDVCPA  190 (213)
T ss_dssp             HHHHHHHHHHCCBCCT
T ss_pred             HHHHHhhhhcCCCcCC
Confidence            9999988888998875

>2pn8_A Peroxiredoxin-4; thioredoxin, oxidoreductase, structural genomics consortium, SGC; 1.80A {Homo sapiens}

Probab=99.64  E-value=8.4e-16  Score=108.61  Aligned_cols=95  Identities=55%  Similarity=0.972  Sum_probs=79.4

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++++++|+++..+ ++++.+++||+++|.+++++++||+..+..|...|++||||++|+|+++++++...+++.+++++.
T Consensus        93 ~~~~~~~~~~~~~-~~g~~~~~fp~l~D~~~~~~~~ygv~~~~~g~~~p~~~lID~~G~I~~~~~g~~~~~~~~~ell~~  171 (211)
T 2pn8_A           93 QFTHLAWINTPRR-QGGLGPIRIPLLSDLTHQISKDYGVYLEDSGHTLRGLFIIDDKGILRQITLNDLPVGRSVDETLRL  171 (211)
T ss_dssp             HHHHHHHHTSCGG-GTCCCSCSSCEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHH
T ss_pred             HHHHHHHHHHhhh-ccCccCCceEEEECCchHHHHHcCCcccCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHH
Confidence            5678999976322 123447899999999999999999976545667899999999999999999877777899999999


Q ss_pred             HHhhhhhhhcCCcccC
Q psy13875         85 VKAFQFVDKHGEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~~~~~~~  100 (105)
                      |++|+..++++++|+.
T Consensus       172 l~~l~~~~~~~~~~p~  187 (211)
T 2pn8_A          172 VQAFQYTDKHGEVCPA  187 (211)
T ss_dssp             HHHHHHHHHHCCBBCT
T ss_pred             HHHhhhcccCCcccCC
Confidence            9999988888998875

>1zye_A Thioredoxin-dependent peroxide reductase; catenane, dodecamer, peroxiredoxin, oxidoreductase; 3.30A {Bos taurus} SCOP: c.47.1.10

Probab=99.63  E-value=1.5e-15  Score=107.80  Aligned_cols=95  Identities=55%  Similarity=0.973  Sum_probs=74.8

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++++++|+++..+. .++.+++||+++|.+++++++||+..+..|+..|++||||++|+|+++++++.+.+++.+++++.
T Consensus       101 ~~~~~~~~~~~~~~-~g~~~~~fp~l~D~~~~i~~~ygv~~~~~g~~~P~~~liD~~G~I~~~~~g~~~~~~~~~ell~~  179 (220)
T 1zye_A          101 HFSHLAWINTPRKN-GGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLRL  179 (220)
T ss_dssp             HHHHHHHHTSCGGG-TCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-CCCcCCceEEEECCcHHHHHHhCCeecCCCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHH
Confidence            46789999763222 34457899999999999999999986655777899999999999999999887778899999999


Q ss_pred             HHhhhhhhhcCCcccC
Q psy13875         85 VKAFQFVDKHGEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~~~~~~~  100 (105)
                      |++|+...+++++|+.
T Consensus       180 l~~l~~~~~~~~~cp~  195 (220)
T 1zye_A          180 VKAFQFVEAHGEVSPA  195 (220)
T ss_dssp             HHHHHHTTC-------
T ss_pred             HHHhhhhcccCCccCC
Confidence            9999988888888875

>2c0d_A Thioredoxin peroxidase 2; peroxiredoxin, 2-Cys, thioredoxin dependant, mitochondrial, antioxidant, oxidoreductase, redox-active center; 1.78A {Plasmodium falciparum}

Probab=99.62  E-value=2.8e-15  Score=106.96  Aligned_cols=94  Identities=40%  Similarity=0.714  Sum_probs=77.9

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++++++|+++..+. +++.+++||+++|.+++++++||+. ...|...|++||||++|+|+++++++...+++.+++++.
T Consensus       101 ~~~~~~~~~~~~~~-~g~~~~~fp~l~D~~~~~~~~ygv~-~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~ell~~  178 (221)
T 2c0d_A          101 VYSHLAWKNMPIEK-GGIGNVEFTLVSDINKDISKNYNVL-YDNSFALRGLFIIDKNGCVRHQTVNDLPIGRNVQEVLRT  178 (221)
T ss_dssp             HHHHHHHHHSCGGG-TCCCSCSSEEEECTTSHHHHHTTCE-ETTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHhhhh-cCccCCceEEEECCchHHHHHcCCc-ccCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHH
Confidence            46789999763221 2344689999999999999999997 545667899999999999999999877667899999999


Q ss_pred             HHhhhhhhhcCCcccC
Q psy13875         85 VKAFQFVDKHGEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~~~~~~~  100 (105)
                      |++|+..++++++|+.
T Consensus       179 l~~L~~~~~~~~~cp~  194 (221)
T 2c0d_A          179 IDSIIHVDTSGEVCPI  194 (221)
T ss_dssp             HHHHHHHHHHCCSCC-
T ss_pred             HHHHhhhhcCCCcCCC
Confidence            9999988888998864

>1qmv_A Human thioredoxin peroxidase-B; peroxiredoxin, sulphinic acid; 1.7A {Homo sapiens} SCOP: c.47.1.10 PDB: 1qq2_A 2z9s_A 2rii_A 3hy2_A*

Probab=99.61  E-value=3.5e-15  Score=103.40  Aligned_cols=95  Identities=57%  Similarity=0.944  Sum_probs=79.9

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      .+++++|+++..+. .++.+++||+++|.+++++++||+.....|+..|++||||++|+|++++.+..+.+++.+++++.
T Consensus        79 ~~~~~~~~~~~~~~-~~~~~~~~p~l~D~~~~~~~~~gv~~~~~~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~e~l~~  157 (197)
T 1qmv_A           79 QFTHLAWINTPRKE-GGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALRL  157 (197)
T ss_dssp             HHHHHHHHTSCGGG-TCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhh-CCCCCCceEEEECCcHHHHHHcCCccCCCCceeeEEEEECCCCcEEEEEeCCCCCCCCHHHHHHH
Confidence            45788999764222 23447899999999999999999986555667899999999999999999887778899999999


Q ss_pred             HHhhhhhhhcCCcccC
Q psy13875         85 VKAFQFVDKHGEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~~~~~~~  100 (105)
                      |++++..++++++|+.
T Consensus       158 l~~l~~~~~~~~~cp~  173 (197)
T 1qmv_A          158 VQAFQYTDEHGEVCPA  173 (197)
T ss_dssp             HHHHHHHHHHCCBBCT
T ss_pred             HHhcchhhccCCccCC
Confidence            9999988888998875

>1xiy_A Peroxiredoxin, pfaop; alpha-aneurysm, thioredoxin fold, peroxiredoxin fold, oxidoreductase; 1.80A {Plasmodium falciparum} SCOP: c.47.1.10

Probab=99.61  E-value=2.4e-15  Score=105.17  Aligned_cols=76  Identities=17%  Similarity=0.231  Sum_probs=62.7

Q ss_pred             chHHHHHHHHhhhcCCCCCCCC-CceEEeeCcchHHhhhCCcccc--CCc---cceeEEEECCCCCEEEEEeccCCC---
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDL-KYPLLADFKKEIATSYGVLIES--AGI---PLRGLFIIDTKGVLRQITVNDLPV---   74 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l-~fpllsD~~~~vak~ygv~~~~--~G~---~~ratfiID~~G~V~~~~~~~~~~---   74 (105)
                      .+++|++|+++.        ++ +||||||.+++++++||+..+.  .|+   +.|++|||| +|+|+++++.+...   
T Consensus        90 ~~~~~~~~~~~~--------~~~~f~lLsD~~~~~a~~yGv~~~~~~~G~g~~~~R~tfvId-dG~V~~~~v~~~~~~~~  160 (182)
T 1xiy_A           90 DIYVLKSWFKSM--------DIKKIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQEKDKQHNI  160 (182)
T ss_dssp             CHHHHHHHHHHT--------TCCSSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEECSSCCTTC
T ss_pred             CHHHHHHHHHHc--------CCCCceEEEeCchHHHHHhCCceeccccCCCCceEEEEEEEc-CCEEEEEEEeCCccccc
Confidence            478999999873        45 7999999999999999998653  243   689999999 99999999876332   


Q ss_pred             ------CCCHHHHHHHHHhh
Q psy13875         75 ------GRSVEEVLRLVKAF   88 (105)
Q Consensus        75 ------~~~~~eil~~l~~l   88 (105)
                            ..+++++|++|++.
T Consensus       161 ~~~~~~~~~~~~vL~~L~~~  180 (182)
T 1xiy_A          161 QTDPYDISTVNNVKEFLKNN  180 (182)
T ss_dssp             SSCCCSTTSHHHHHHHHHCC
T ss_pred             ccCcccCCCHHHHHHHHHhc
Confidence                  37899999999763

>2h01_A 2-Cys peroxiredoxin; thioredoxin peroxidase, structural genomics, SGC, structural genomics consortium, oxidoreductase; 2.30A {Plasmodium yoelii} SCOP: c.47.1.10

Probab=99.61  E-value=2.6e-15  Score=103.57  Aligned_cols=94  Identities=37%  Similarity=0.671  Sum_probs=78.9

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++++++|+++.... +++.+++||+++|.+++++++||+.. ..|+..|++||||++|+|++++.+....+++.+++++.
T Consensus        76 ~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~~~~~~~~gv~~-~~g~~~P~~~liD~~G~i~~~~~g~~~~~~~~~~l~~~  153 (192)
T 2h01_A           76 KFTHLAWKKTPLSQ-GGIGNIKHTLISDISKSIARSYDVLF-NESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILRL  153 (192)
T ss_dssp             HHHHHHHHTSCGGG-TCCCSCSSEEEECTTSHHHHHTTCEE-TTTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHHH
T ss_pred             HHHHHHHHHhHHhh-CCccCCCcCeEECCcHHHHHHhCCcC-cCCceeeEEEEEcCCCEEEEEEeCCCCCCCCHHHHHHH
Confidence            56889999763221 24457899999999999999999986 34667899999999999999999876667789999999


Q ss_pred             HHhhhhhhhcCCcccC
Q psy13875         85 VKAFQFVDKHGEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~~~~~~~  100 (105)
                      |++++..++++++|+.
T Consensus       154 l~~l~~~~~~~~~cp~  169 (192)
T 2h01_A          154 IDALQHHEKYGDVCPA  169 (192)
T ss_dssp             HHHHHHHHHHCCCCCS
T ss_pred             HHHHhhhhhcCCCccC
Confidence            9999988888998875

>3keb_A Probable thiol peroxidase; structural genomics, APC40679, PSI-2, Pro structure initiative; HET: MSE; 1.80A {Chromobacterium violaceum}

Probab=99.60  E-value=5.3e-15  Score=106.70  Aligned_cols=79  Identities=15%  Similarity=0.167  Sum_probs=66.9

Q ss_pred             chHHHHHHHHhhhcCCCCCCCC-CceEEeeC-cchHHhhhCCcccc---CCccceeEEEECCCCCEEEEEeccC-CCCCC
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDL-KYPLLADF-KKEIATSYGVLIES---AGIPLRGLFIIDTKGVLRQITVNDL-PVGRS   77 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l-~fpllsD~-~~~vak~ygv~~~~---~G~~~ratfiID~~G~V~~~~~~~~-~~~~~   77 (105)
                      .+++|++|+++.        ++ +||+|||. +++++++||+..+.   .|++.|++||||++|+|+++++.+. ...++
T Consensus        92 s~~~~~~f~~~~--------gl~~fplLsD~~~~~vak~yGv~~~~~~~~G~~~p~tfvID~dG~I~~~~~~~~~~~~pd  163 (224)
T 3keb_A           92 SPSSLARARHEH--------GLPNIALLSTLRGRDFHKRYGVLITEYPLSGYTSPAIILADAANVVHYSERLANTRDFFD  163 (224)
T ss_dssp             CHHHHHHHHHHH--------CCTTCEEEESTTCTTHHHHTTCBCCSTTSTTCBCCEEEEECTTCBEEEEEECSBTTCCCC
T ss_pred             CHHHHHHHHHHc--------CCCCceEEEcCCchHHHHHhCCccccccccCCccCEEEEEcCCCEEEEEEecCCCCCCCC
Confidence            468999999874        66 69999999 69999999998653   4677999999999999999998753 33578


Q ss_pred             HHHHHHHHHhhhh
Q psy13875         78 VEEVLRLVKAFQF   90 (105)
Q Consensus        78 ~~eil~~l~~l~~   90 (105)
                      +++++++|+.++.
T Consensus       164 ~~evl~~L~~l~~  176 (224)
T 3keb_A          164 FDAIEKLLQEGEQ  176 (224)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhh
Confidence            9999999988764

>3mng_A Peroxiredoxin-5, mitochondrial; peroxidase, PRXV, substrate analog, DTT, oxidoreductase; 1.45A {Homo sapiens} SCOP: c.47.1.10 PDB: 2vl3_A 1oc3_A 2vl2_A 2vl9_A 1urm_A 1hd2_A 1h4o_A

Probab=99.60  E-value=1.8e-15  Score=104.58  Aligned_cols=75  Identities=15%  Similarity=0.225  Sum_probs=64.2

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCC--ceEEeeCcchHHhhhCCccccC-----C--ccceeEEEECCCCCEEEEEeccCCCC
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLK--YPLLADFKKEIATSYGVLIESA-----G--IPLRGLFIIDTKGVLRQITVNDLPVG   75 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~--fpllsD~~~~vak~ygv~~~~~-----G--~~~ratfiID~~G~V~~~~~~~~~~~   75 (105)
                      +++|++|+++.        +++  ||+|+|.+++++++||+..++.     |  .+.|+||||| +|+|+++++++...+
T Consensus        90 ~~~~~~f~~~~--------~~~~~fp~l~D~~~~va~~yGv~~~~~~~~~~g~~~~~r~tfvID-dG~I~~~~v~~~~~g  160 (173)
T 3mng_A           90 AFVTGEWGRAH--------KAEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQ-DGIVKALNVEPDGTG  160 (173)
T ss_dssp             HHHHHHHHHHT--------TCTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEE-TTEEEEEEECTTSSC
T ss_pred             HHHHHHHHHHh--------CCCCceEEEECCChHHHHHhCCCcccccccccCCcceEEEEEEEE-CCEEEEEEEeCCCCC
Confidence            57899999873        556  9999999999999999986531     2  4689999999 999999999988888


Q ss_pred             CCHHHHHHHHHhh
Q psy13875         76 RSVEEVLRLVKAF   88 (105)
Q Consensus        76 ~~~~eil~~l~~l   88 (105)
                      +++.++.+.|++|
T Consensus       161 ~~~~~~~~vl~~l  173 (173)
T 3mng_A          161 LTCSLAPNIISQL  173 (173)
T ss_dssp             SSTTSHHHHHHHC
T ss_pred             cchHHHHHHHHhC
Confidence            8988888888765

>3ztl_A Thioredoxin peroxidase; oxidoreductase, reductase, schistosomiasis, thioredoxin fold; 3.00A {Schistosoma mansoni} PDB: 3zvj_A 3zvj_D

Probab=99.57  E-value=2.3e-14  Score=101.67  Aligned_cols=95  Identities=56%  Similarity=0.895  Sum_probs=79.9

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++++++|++...+. .++.+++||+++|.++.++++||+.....|+..|++||||++|+|++++.+.....++.+++++.
T Consensus       114 ~~~~~~~~~~~~~~-~~~~~~~~~~l~D~~~~~~~~ygv~~~~~g~~~P~~~lID~~G~I~~~~~g~~~~~~~~~~il~~  192 (222)
T 3ztl_A          114 QYSHLAWDNLDRKS-GGLGHMKIPLLADRKQEISKAYGVFDEEDGNAFRGLFIIDPNGILRQITINDKPVGRSVDETLRL  192 (222)
T ss_dssp             HHHHHHHHHSCGGG-TSCCSCSSCEEECSSSHHHHHTTCBCTTTSSBCEEEEEECTTSEEEEEEEECTTBCCCHHHHHHH
T ss_pred             HHHHHHHHHHhhhh-ccccccceeEEeCCchHHHHHcCCeecCCCCccceEEEECCCCeEEEEEecCCCCCCCHHHHHHH
Confidence            45788999764222 23347899999999999999999986656777899999999999999999877777789999999


Q ss_pred             HHhhhhhhhcCCcccC
Q psy13875         85 VKAFQFVDKHGEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~~~~~~~  100 (105)
                      |++++..++++++|+.
T Consensus       193 l~~l~~~~~~~~~c~~  208 (222)
T 3ztl_A          193 LDAFQFVEKHGEVCPV  208 (222)
T ss_dssp             HHHHHHHHHHSCBBCT
T ss_pred             HHHhhcccccCccCCc
Confidence            9999999888888854

>2xhf_A Peroxiredoxin 5; oxidoreductase, antioxidant enzymes; 1.30A {Alvinella pompejana}

Probab=99.51  E-value=1.8e-14  Score=100.04  Aligned_cols=74  Identities=22%  Similarity=0.227  Sum_probs=55.6

Q ss_pred             chHHHHHHHHhhhcCCCCCCCC--CceEEeeCcchHHhhhCCccccC----C-ccceeEEEECCCCCEEEEEeccCCCC-
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDL--KYPLLADFKKEIATSYGVLIESA----G-IPLRGLFIIDTKGVLRQITVNDLPVG-   75 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l--~fpllsD~~~~vak~ygv~~~~~----G-~~~ratfiID~~G~V~~~~~~~~~~~-   75 (105)
                      .+++|++|+++.        ++  +||||||++++++++||+..+..    | .+.|+||||| +|+|+++++.+.+.+ 
T Consensus        87 ~~~~~~~w~~~~--------~~~~~f~lLSD~~~~~a~ayGv~~~~~~~g~g~~~~R~tfvId-dG~V~~~~v~~~~~~~  157 (171)
T 2xhf_A           87 DPFVMAAWGKTV--------DPEHKIRMLADMHGEFTRALGTELDSSKMLGNNRSRRYAMLID-DNKIRSVSTEPDITGL  157 (171)
T ss_dssp             CHHHHHHHHHHH--------CTTCCSEEEECTTSHHHHHHTCBCCCHHHHSSCCBCCEEEEEE-TTEEEEEEETTSCSHH
T ss_pred             CHHHHHHHHHhc--------CCCCCeEEEEeCCchHHHHhCCceeccccCCCcceEEEEEEEe-CCEEEEEEEeCCCCcc
Confidence            478999999874        44  89999999999999999986531    2 3789999999 999999999654431 


Q ss_pred             --CCHHHHHHHHH
Q psy13875         76 --RSVEEVLRLVK   86 (105)
Q Consensus        76 --~~~~eil~~l~   86 (105)
                        .+.+++|+.|+
T Consensus       158 ~~s~a~~vL~~~~  170 (171)
T 2xhf_A          158 ACLLSIQRQKENK  170 (171)
T ss_dssp             HHHHHHHHC----
T ss_pred             cCCCHHHHHHHhc
Confidence              23566665543

>4f82_A Thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.85A {Burkholderia cenocepacia}

Probab=99.51  E-value=2.1e-14  Score=100.23  Aligned_cols=72  Identities=19%  Similarity=0.269  Sum_probs=56.4

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCC--ceEEeeCcchHHhhhCCcccc--CCc---cceeEEEECCCCCEEEEEeccCCCC-
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLK--YPLLADFKKEIATSYGVLIES--AGI---PLRGLFIIDTKGVLRQITVNDLPVG-   75 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~--fpllsD~~~~vak~ygv~~~~--~G~---~~ratfiID~~G~V~~~~~~~~~~~-   75 (105)
                      .+++|++|+++.        +++  ||+|||++++++++||+..+.  .|+   +.|+|||| ++|+|+++++++. .. 
T Consensus        93 ~~~~~~~f~~~~--------~l~~~f~lLsD~~~~va~ayGv~~~~~~~G~g~~s~R~tfII-~dG~I~~~~~~~~-~~~  162 (176)
T 4f82_A           93 DAFVMGAWGRDL--------HTAGKVRMMADGSAAFTHALGLTQDLSARGMGIRSLRYAMVI-DGGVVKTLAVEAP-GKF  162 (176)
T ss_dssp             CHHHHHHHHHHT--------TCTTTSEEEECTTCHHHHHHTCEEECGGGTCCEEECCEEEEE-ETTEEEEEEECCT-TCC
T ss_pred             CHHHHHHHHHHh--------CCCCCceEEEcCchHHHHHhCCCccccccCCCcccccEEEEE-cCCEEEEEEEcCC-CCc
Confidence            478999999873        566  999999999999999998653  353   57999999 9999999999763 23 


Q ss_pred             --CCHHHHHHHH
Q psy13875         76 --RSVEEVLRLV   85 (105)
Q Consensus        76 --~~~~eil~~l   85 (105)
                        .+.+++|+.|
T Consensus       163 ~~~~a~~vL~~L  174 (176)
T 4f82_A          163 EVSDAASVLATL  174 (176)
T ss_dssp             SSSSHHHHHHTC
T ss_pred             chhhHHHHHHHh
Confidence              3455555543

>1we0_A Alkyl hydroperoxide reductase C; peroxiredoxin, AHPC, oxidoreductase; 2.90A {Amphibacillus xylanus} SCOP: c.47.1.10

Probab=99.50  E-value=9.9e-14  Score=95.07  Aligned_cols=92  Identities=32%  Similarity=0.568  Sum_probs=74.5

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++.+++|+++..    .+.+++||+++|.+++++++||+.....|...|++||||++|+|++.+.+....+++.+++++.
T Consensus        76 ~~~~~~~~~~~~----~~~~~~~~~~~d~~~~~~~~~~v~~~~~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~  151 (187)
T 1we0_A           76 HFVHKAWHENSP----AVGSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINK  151 (187)
T ss_dssp             HHHHHHHHHSCH----HHHTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHH
T ss_pred             HHHHHHHHHHhc----cccCCCceEEECCchHHHHHhCCCcCCCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHH
Confidence            457888986521    1116799999999999999999986545667899999999999999999876666789999999


Q ss_pred             HHhhhhhhhc-CCcccC
Q psy13875         85 VKAFQFVDKH-GEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~-~~~~~~  100 (105)
                      |++++..+++ +++|+.
T Consensus       152 l~~l~~~~~~~~~~~p~  168 (187)
T 1we0_A          152 VKAAQYVRENPGEVCPA  168 (187)
T ss_dssp             HHHHHHHHTSTTCCC--
T ss_pred             HHHHhhhhhCCCccccc
Confidence            9999988877 788774

>3p7x_A Probable thiol peroxidase; thioredoxin fold, oxidoreductase; HET: PG4; 1.96A {Staphylococcus aureus} SCOP: c.47.1.0

Probab=99.49  E-value=1.8e-13  Score=92.33  Aligned_cols=76  Identities=17%  Similarity=0.263  Sum_probs=64.6

Q ss_pred             hHHHHHHHHhhhcCCCCCCCC-CceEEeeC-cchHHhhhCCccccCCccceeEEEECCCCCEEEEEecc-CCCCCCHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDL-KYPLLADF-KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVND-LPVGRSVEEV   81 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l-~fpllsD~-~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~-~~~~~~~~ei   81 (105)
                      ++++++|+++.        ++ +||+++|. +++++++||+.....|+..|++||||++|+|++++++. ....++.+++
T Consensus        88 ~~~~~~~~~~~--------~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~~~i  159 (166)
T 3p7x_A           88 PFAQKRWCASA--------GLDNVITLSDHRDLSFGENYGVVMEELRLLARAVFVLDADNKVVYKEIVSEGTDFPDFDAA  159 (166)
T ss_dssp             HHHHHHHHHHH--------TCSSCEEEECTTTCHHHHHHTCEETTTTEECCEEEEECTTCBEEEEEECSBTTSCCCHHHH
T ss_pred             HHHHHHHHHHc--------CCCceEEccCCchhHHHHHhCCccccCCceeeEEEEECCCCeEEEEEEcCCcccCCCHHHH
Confidence            57889999873        67 89999999 89999999998655566789999999999999998865 4446789999


Q ss_pred             HHHHHhh
Q psy13875         82 LRLVKAF   88 (105)
Q Consensus        82 l~~l~~l   88 (105)
                      ++.|+++
T Consensus       160 l~~l~~l  166 (166)
T 3p7x_A          160 LAAYKNI  166 (166)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhcC
Confidence            9998764

>1psq_A Probable thiol peroxidase; structural genomics, NYSGXRC, PSI, structure initiative, NEW YORK SGX research center for STRU genomics; 2.30A {Streptococcus pneumoniae} SCOP: c.47.1.10

Probab=99.46  E-value=5.4e-13  Score=89.70  Aligned_cols=76  Identities=22%  Similarity=0.408  Sum_probs=63.7

Q ss_pred             hHHHHHHHHhhhcCCCCCCCC-CceEEee-CcchHHhhhCCccccCCccceeEEEECCCCCEEEEEecc-CCCCCCHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDL-KYPLLAD-FKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVND-LPVGRSVEEV   81 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l-~fpllsD-~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~-~~~~~~~~ei   81 (105)
                      ++++++|+++.        ++ +||+++| .++.++++||+.....|+..|++||||++|+|++.+.+. ....++.+++
T Consensus        85 ~~~~~~~~~~~--------~~~~~~~l~D~~~~~~~~~~gv~~~~~g~~~p~~~liD~~G~i~~~~~g~~~~~~~~~~~~  156 (163)
T 1psq_A           85 PFAQKRWCGAE--------GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAA  156 (163)
T ss_dssp             HHHHHHHHHHH--------TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHHH
T ss_pred             HHHHHHHHHhc--------CCCCcEEecCCchhHHHHHhCCccccCCceEEEEEEEcCCCeEEEEEecCCcCCCCCHHHH
Confidence            56789999873        67 8999999 899999999998544466679999999999999999875 3445688999


Q ss_pred             HHHHHhh
Q psy13875         82 LRLVKAF   88 (105)
Q Consensus        82 l~~l~~l   88 (105)
                      ++.|++|
T Consensus       157 l~~l~~l  163 (163)
T 1psq_A          157 IAAAKAL  163 (163)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhC
Confidence            9998864

>1zof_A Alkyl hydroperoxide-reductase; decamer, toroide-shaped complex, oxidoreductase; 2.95A {Helicobacter pylori} SCOP: c.47.1.10

Probab=99.46  E-value=1.9e-13  Score=94.58  Aligned_cols=94  Identities=37%  Similarity=0.732  Sum_probs=76.4

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++.+++|+++.... .+..+++||+++|.+++++++||+..+ .|...|++||||++|+|++.+.+....+++.+++++.
T Consensus        78 ~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~v~~~-~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~  155 (198)
T 1zof_A           78 EQVHFAWKNTPVEK-GGIGQVSFPMVADITKSISRDYDVLFE-EAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRM  155 (198)
T ss_dssp             HHHHHHHHTSCGGG-TCCCCCSSCEEECTTSHHHHHTTCEET-TTEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHH
T ss_pred             HHHHHHHHHhhhhc-ccccCceeEEEECCchHHHHHhCCccc-CCcccceEEEECCCCEEEEEEecCCCCCCCHHHHHHH
Confidence            45788898653221 233488999999999999999999753 3556899999999999999999876667789999999


Q ss_pred             HHhhhhhhhcCCcccC
Q psy13875         85 VKAFQFVDKHGEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~~~~~~~  100 (105)
                      |++++...++|+.||.
T Consensus       156 l~~l~~~~~~~~~~p~  171 (198)
T 1zof_A          156 VDALLHFEEHGEVCPA  171 (198)
T ss_dssp             HHHHHHHHSSCCCCC-
T ss_pred             HHHHHHhhccCCccCC
Confidence            9999988888888864

>3drn_A Peroxiredoxin, bacterioferritin comigratory prote homolog; bacterioferritin comigratory protein, oxidore; HET: CIT; 2.15A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=99.44  E-value=4.1e-13  Score=89.98  Aligned_cols=84  Identities=26%  Similarity=0.340  Sum_probs=68.7

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++..++|+++.        +++||+++|.+++++++||+...  +...|++||||++|+|++++.+......+.+++++.
T Consensus        74 ~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~v~~~--~~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~il~~  143 (161)
T 3drn_A           74 INSHKRFKEKY--------KLPFILVSDPDKKIRELYGAKGF--ILPARITFVIDKKGIIRHIYNSQMNPANHVNEALKA  143 (161)
T ss_dssp             HHHHHHHHHHT--------TCCSEEEECTTSHHHHHTTCCCS--SSCCCEEEEECTTSBEEEEEECSSCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHh--------CCCceEEECCcHHHHHHcCCCCc--CcccceEEEECCCCEEEEEEecCCCCCcCHHHHHHH
Confidence            56788999772        78999999999999999999721  245799999999999999999866667789999999


Q ss_pred             HHhhhhhhhcCCcc
Q psy13875         85 VKAFQFVDKHGEGS   98 (105)
Q Consensus        85 l~~l~~~~~~~~~~   98 (105)
                      |++|+..++.++++
T Consensus       144 l~~l~~~~~~~~~~  157 (161)
T 3drn_A          144 LKQIKEEEISLEHH  157 (161)
T ss_dssp             HHHHHHHHHC----
T ss_pred             HHHhhhhhcchhhc
Confidence            99999888777654

>3ixr_A Bacterioferritin comigratory protein; alpha beta protein, oxidoreductase; 1.60A {Xylella fastidiosa}

Probab=99.39  E-value=1.4e-12  Score=89.34  Aligned_cols=77  Identities=21%  Similarity=0.302  Sum_probs=63.0

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC--Cc----cceeEEEECCCCCEEEEEeccCCCCCCH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA--GI----PLRGLFIIDTKGVLRQITVNDLPVGRSV   78 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~--G~----~~ratfiID~~G~V~~~~~~~~~~~~~~   78 (105)
                      ++.+++|+++.        +++||+++|.+++++++||+.....  |.    ..|++||||++|+|++++. ......+.
T Consensus        96 ~~~~~~~~~~~--------~~~f~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~~p~~~lID~~G~I~~~~~-~~~~~~~~  166 (179)
T 3ixr_A           96 VKSHDSFCAKQ--------GFTFPLVSDSDAILCKAFDVIKEKTMYGRQVIGIERSTFLIGPTHRIVEAWR-QVKVPGHA  166 (179)
T ss_dssp             HHHHHHHHHHH--------TCCSCEEECTTCHHHHHTTCEEEECCC--CEEEECCEEEEECTTSBEEEEEC-SCCSTTHH
T ss_pred             HHHHHHHHHHc--------CCceEEEECCchHHHHHcCCcccccccCcccCCcceEEEEECCCCEEEEEEc-CCCCCCCH
Confidence            46789999873        7899999999999999999975422  21    3699999999999999994 45556789


Q ss_pred             HHHHHHHHhhhh
Q psy13875         79 EEVLRLVKAFQF   90 (105)
Q Consensus        79 ~eil~~l~~l~~   90 (105)
                      +++++.|++|+.
T Consensus       167 ~~il~~l~~l~~  178 (179)
T 3ixr_A          167 EEVLNKLKAHAE  178 (179)
T ss_dssp             HHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhc
Confidence            999999998764

>2bmx_A Alkyl hydroperoxidase C; peroxiredoxin, antioxidant defense system, oxidoreductase, structural proteomics in EURO spine; 2.4A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=99.39  E-value=2.5e-12  Score=88.80  Aligned_cols=86  Identities=31%  Similarity=0.517  Sum_probs=67.7

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++.+++|+++.    +.+.+++||+++|.++.++++||+... .|...|++||||++|+|++.+.+.....++.+++++.
T Consensus        90 ~~~~~~~~~~~----~~~~~~~~~~~~d~~~~~~~~~~v~~~-~g~~~P~~~lid~~G~i~~~~~g~~~~~~~~~~l~~~  164 (195)
T 2bmx_A           90 EFAHFQWRAQH----NDLKTLPFPMLSDIKRELSQAAGVLNA-DGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRV  164 (195)
T ss_dssp             HHHHHHHHHHC----TTGGGCCSCEEECTTSHHHHHHTCBCT-TSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHh----ccccCCceeEEeCCchHHHHHhCCccc-CCCccceEEEEcCCCeEEEEEecCCCCCCCHHHHHHH
Confidence            45788999763    223378999999999999999999755 4656899999999999999999877667789999999


Q ss_pred             HHhhhhhhhcCCccc
Q psy13875         85 VKAFQFVDKHGEGSK   99 (105)
Q Consensus        85 l~~l~~~~~~~~~~~   99 (105)
                      |++++.    ++.|+
T Consensus       165 l~~l~~----~~~~p  175 (195)
T 2bmx_A          165 LDALQS----DELCA  175 (195)
T ss_dssp             HHHHHC---------
T ss_pred             HHHHhh----CCCcC
Confidence            998874    44554

>3uma_A Hypothetical peroxiredoxin protein; nysgrc, PSI biology, structural genomics, NEW YORK structura genomics research consortium; 2.20A {Sinorhizobium meliloti}

Probab=99.37  E-value=9.9e-13  Score=91.52  Aligned_cols=71  Identities=15%  Similarity=0.319  Sum_probs=56.3

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCC--ceEEeeCcchHHhhhCCcccc--CCc---cceeEEEECCCCCEEEEEeccCCCC--
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLK--YPLLADFKKEIATSYGVLIES--AGI---PLRGLFIIDTKGVLRQITVNDLPVG--   75 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~--fpllsD~~~~vak~ygv~~~~--~G~---~~ratfiID~~G~V~~~~~~~~~~~--   75 (105)
                      ++++++|+++.        +++  ||+|+|++++++++||+..+.  .|+   +.|+||||| +|+|+++++++.+..  
T Consensus       103 ~~~~~~f~~~~--------~~~~~fp~l~D~~~~va~~yGv~~~~~~~g~g~~~~r~tfiId-dG~I~~~~~~~~~g~~~  173 (184)
T 3uma_A          103 LHVMGAWATHS--------GGMGKIHFLSDWNAAFTKAIGMEIDLSAGTLGIRSKRYSMLVE-DGVVKALNIEESPGQAT  173 (184)
T ss_dssp             HHHHHHHHHHH--------TCTTTSEEEECTTCHHHHHTTCEEEEGGGTCEEEECCEEEEEE-TTEEEEEEECSSTTCCS
T ss_pred             HHHHHHHHHHh--------CCCCceEEEEcCchHHHHHcCCceeccccCCcccceeEEEEEC-CCEEEEEEEeCCCCCCc
Confidence            57899999874        667  999999999999999998642  243   579999996 999999999864433  


Q ss_pred             -CCHHHHHHH
Q psy13875         76 -RSVEEVLRL   84 (105)
Q Consensus        76 -~~~~eil~~   84 (105)
                       .+.+++|+.
T Consensus       174 ~~~~~~vL~~  183 (184)
T 3uma_A          174 ASGAAAMLEL  183 (184)
T ss_dssp             TTSHHHHHHH
T ss_pred             CCCHHHHHhh
Confidence             456666654

>3gkn_A Bacterioferritin comigratory protein; BCP, PRX, atypical 2-Cys, oxidoreduc; HET: BIH; 1.47A {Xanthomonas campestris PV} PDB: 3gkk_A 3gkm_A

Probab=99.37  E-value=2.2e-12  Score=86.05  Aligned_cols=77  Identities=19%  Similarity=0.327  Sum_probs=62.8

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC--Cc----cceeEEEECCCCCEEEEEeccCCCCCCH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA--GI----PLRGLFIIDTKGVLRQITVNDLPVGRSV   78 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~--G~----~~ratfiID~~G~V~~~~~~~~~~~~~~   78 (105)
                      ++.+++|+++.        +++||+++|.+++++++||+.....  |.    ..|++||||++|+|++++. ......+.
T Consensus        80 ~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~v~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~-~~~~~~~~  150 (163)
T 3gkn_A           80 VKSHDNFCAKQ--------GFAFPLVSDGDEALCRAFDVIKEKNMYGKQVLGIERSTFLLSPEGQVVQAWR-KVKVAGHA  150 (163)
T ss_dssp             HHHHHHHHHHH--------CCSSCEEECTTCHHHHHTTCEEEEEETTEEEEEECCEEEEECTTSCEEEEEC-SCCSTTHH
T ss_pred             HHHHHHHHHHh--------CCCceEEECCcHHHHHHhCCccccccccccccCcceEEEEECCCCeEEEEEc-CCCcccCH
Confidence            57889999873        7899999999999999999985321  11    2799999999999999994 45556788


Q ss_pred             HHHHHHHHhhhh
Q psy13875         79 EEVLRLVKAFQF   90 (105)
Q Consensus        79 ~eil~~l~~l~~   90 (105)
                      +++++.|++|+.
T Consensus       151 ~~il~~l~~l~~  162 (163)
T 3gkn_A          151 DAVLAALKAHAK  162 (163)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhc
Confidence            999999988764

>1xvw_A Hypothetical protein RV2238C/MT2298; thioredoxin fold, oxidized cystein sulfenic acid, structural genomics, PSI; 1.90A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1xxu_A

Probab=99.36  E-value=5.1e-12  Score=83.86  Aligned_cols=77  Identities=27%  Similarity=0.538  Sum_probs=64.8

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeC--cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADF--KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVL   82 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~--~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil   82 (105)
                      ++.+++|+++.        +++||+++|.  ++.+++.||+.....|++.|++||||++|+|++.+.+........++++
T Consensus        81 ~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~v~~~~~~~p~~~~~lid~~G~i~~~~~g~~~~~~~~~~l~  152 (160)
T 1xvw_A           81 PPTHKIWATQS--------GFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWT  152 (160)
T ss_dssp             HHHHHHHHHHH--------TCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHH
T ss_pred             HHHHHHHHHhc--------CCCceEEecCCcChHHHHHcCCccccCCCeeeeEEEECCCCeEEEEEecCCCCCCCHHHHH
Confidence            46788999773        6799999996  8999999999755446656699999999999999998766667899999


Q ss_pred             HHHHhhh
Q psy13875         83 RLVKAFQ   89 (105)
Q Consensus        83 ~~l~~l~   89 (105)
                      +.|++++
T Consensus       153 ~~l~~l~  159 (160)
T 1xvw_A          153 DALAALT  159 (160)
T ss_dssp             HHHHHTC
T ss_pred             HHHHHhc
Confidence            9998875

>2yzh_A Probable thiol peroxidase; redox protein, antioxidant, oxidoreductase, STRU genomics, NPPSFA; 1.85A {Aquifex aeolicus}

Probab=99.34  E-value=6.3e-12  Score=84.88  Aligned_cols=75  Identities=25%  Similarity=0.445  Sum_probs=61.7

Q ss_pred             hHHHHHHHHhhhcCCCCCCCC-CceEEee-CcchHHhhhCCcccc---CCccceeEEEECCCCCEEEEEecc-CCCCCCH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDL-KYPLLAD-FKKEIATSYGVLIES---AGIPLRGLFIIDTKGVLRQITVND-LPVGRSV   78 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l-~fpllsD-~~~~vak~ygv~~~~---~G~~~ratfiID~~G~V~~~~~~~-~~~~~~~   78 (105)
                      ++.+++|+++.        ++ +||+++| .++++ ++||+....   .|...|++||||++|+|++++.+. .....+.
T Consensus        90 ~~~~~~~~~~~--------~~~~~~~l~D~~~~~~-~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~  160 (171)
T 2yzh_A           90 PFAQKRFCESF--------NIQNVTVASDFRYRDM-EKYGVLIGEGALKGILARAVFIIDKEGKVAYVQLVPEITEEPNY  160 (171)
T ss_dssp             HHHHHHHHHHT--------TCCSSEEEECTTTCGG-GGGTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCC
T ss_pred             HHHHHHHHHHc--------CCCCeEEeecCccCcH-HHhCCEecccccCCceeeEEEEEcCCCeEEEEEeCCCcCCCCCH
Confidence            56789999872        67 8999999 88999 999997543   255679999999999999999864 3345688


Q ss_pred             HHHHHHHHhh
Q psy13875         79 EEVLRLVKAF   88 (105)
Q Consensus        79 ~eil~~l~~l   88 (105)
                      +++++.|++|
T Consensus       161 ~~ll~~l~~l  170 (171)
T 2yzh_A          161 DEVVNKVKEL  170 (171)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhh
Confidence            9999999875

>3zrd_A Thiol peroxidase; oxidoreductase, 2Cys peroxiredoxin, thioredoxin-fold, ROS PR; 1.74A {Yersinia pseudotuberculosis} PDB: 2xpe_A 2xpd_A 3zre_A 2yjh_A 4af2_A 3hvs_A* 1qxh_A* 3i43_A* 3hvv_A 3hvx_A

Probab=99.32  E-value=2.9e-12  Score=89.64  Aligned_cols=74  Identities=16%  Similarity=0.277  Sum_probs=60.8

Q ss_pred             hHHHHHHHHhhhcCCCCCCCC-CceEEeeC-cchHHhhhCCcccc---CCccceeEEEECCCCCEEEEEecc-CCCCCCH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDL-KYPLLADF-KKEIATSYGVLIES---AGIPLRGLFIIDTKGVLRQITVND-LPVGRSV   78 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l-~fpllsD~-~~~vak~ygv~~~~---~G~~~ratfiID~~G~V~~~~~~~-~~~~~~~   78 (105)
                      ++++++|+++        .++ +||+++|. +++++++||+....   .|+..|++||||++|+|++++++. ....++.
T Consensus       121 ~~~~~~~~~~--------~~~~~f~~l~D~~~~~~~~~ygv~~~~~~~~g~~~p~~~lID~~G~I~~~~~~~~~~~~~~~  192 (200)
T 3zrd_A          121 PFAQSRFCGA--------EGLSNVITLSTLRGADFKQAYGVAITEGPLAGLTARAVVVLDGQDNVIYSELVNEITTEPNY  192 (200)
T ss_dssp             HHHHTTCTTT--------TTCTTEEEEETTSCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCH
T ss_pred             HHHHHHHHHH--------cCCCCceEEecCchHHHHHHhCceeecccCCCccccEEEEECCCCeEEEEEecCCcccCCCH
Confidence            5677788865        278 99999999 99999999998543   355689999999999999999865 5556789


Q ss_pred             HHHHHHHH
Q psy13875         79 EEVLRLVK   86 (105)
Q Consensus        79 ~eil~~l~   86 (105)
                      ++++++|+
T Consensus       193 ~~~l~~Lk  200 (200)
T 3zrd_A          193 DAALAALK  200 (200)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhhC
Confidence            99988763

>1nm3_A Protein HI0572; hybrid, peroxiredoxin, glutaredoxin, electron transport; 2.80A {Haemophilus influenzae} SCOP: c.47.1.1 c.47.1.10

Probab=99.31  E-value=6.8e-12  Score=89.27  Aligned_cols=76  Identities=17%  Similarity=0.335  Sum_probs=62.8

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCC-ceEEeeCcchHHhhhCCcccc--CCc---cceeEEEECCCCCEEEEEeccCCCC---
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLK-YPLLADFKKEIATSYGVLIES--AGI---PLRGLFIIDTKGVLRQITVNDLPVG---   75 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~-fpllsD~~~~vak~ygv~~~~--~G~---~~ratfiID~~G~V~~~~~~~~~~~---   75 (105)
                      ++++++|+++.        +++ ||+|+|.+++++++||+..+.  .|+   +.|+|||| ++|+|++++++....+   
T Consensus        80 ~~~~~~~~~~~--------~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~t~li-~~G~i~~~~~~~~~~~~~~  150 (241)
T 1nm3_A           80 TFVMNAWKEDE--------KSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLV-KNGVVEKMFIEPNEPGDPF  150 (241)
T ss_dssp             HHHHHHHHHHT--------TCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEE-ETTEEEEEEECCSCSSCCC
T ss_pred             HHHHHHHHHhc--------CCCceEEEECCCcHHHHHhCceeecccccCcccceeEEEEE-ECCEEEEEEEeccCCCccc
Confidence            57899999873        565 999999999999999997542  244   57999999 9999999999875554   


Q ss_pred             --CCHHHHHHHHHhhh
Q psy13875         76 --RSVEEVLRLVKAFQ   89 (105)
Q Consensus        76 --~~~~eil~~l~~l~   89 (105)
                        ++.+++++.|++.+
T Consensus       151 ~~~~~~~il~~l~~~~  166 (241)
T 1nm3_A          151 KVSDADTMLKYLAPQH  166 (241)
T ss_dssp             SSSSHHHHHHHHCTTS
T ss_pred             eecCHHHHHHHhhhhc
Confidence              68999999998653

>1tp9_A Peroxiredoxin, PRX D (type II); oligomer, thioredoxin fold, oxidoreductase; 1.62A {Populus trichocarpa} SCOP: c.47.1.10

Probab=99.30  E-value=4e-12  Score=85.69  Aligned_cols=70  Identities=16%  Similarity=0.205  Sum_probs=56.0

Q ss_pred             hHHHHHHHHhhhcCCCCCCCC--CceEEeeCcchHHhhhCCcccc--CCc---cceeEEEECCCCCEEEEEeccCCCCC-
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDL--KYPLLADFKKEIATSYGVLIES--AGI---PLRGLFIIDTKGVLRQITVNDLPVGR-   76 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l--~fpllsD~~~~vak~ygv~~~~--~G~---~~ratfiID~~G~V~~~~~~~~~~~~-   76 (105)
                      ++++++|+++.        ++  +||+|+|.+++++++||+....  .|+   +.|++|||| +|+|+++++++ +.++ 
T Consensus        82 ~~~~~~~~~~~--------~~~~~~~~l~D~~~~~~~~~gv~~~~~~~g~~~~~~p~~~vid-~G~i~~~~~~~-~~~~~  151 (162)
T 1tp9_A           82 PFVMKAWAKSY--------PENKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEG-GGEFT  151 (162)
T ss_dssp             HHHHHHHHHTC--------TTCSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECS-SSCCS
T ss_pred             HHHHHHHHHhc--------CCCCCeEEEECCCchHHHHcCcccccccCCCCccceeEEEEEE-CCEEEEEEeeC-CCCCc
Confidence            57899999762        56  8999999999999999997432  242   479999999 99999999987 4443 


Q ss_pred             --CHHHHHHH
Q psy13875         77 --SVEEVLRL   84 (105)
Q Consensus        77 --~~~eil~~   84 (105)
                        +.+++|+.
T Consensus       152 ~~~~~~vl~~  161 (162)
T 1tp9_A          152 VSSAEDILKD  161 (162)
T ss_dssp             SCSHHHHHTT
T ss_pred             cCCHHHHHhh
Confidence              57777654

>1q98_A Thiol peroxidase, TPX; structural genomics, NYSGXRC, PSI, protein structure initiative; 1.90A {Haemophilus influenzae} SCOP: c.47.1.10

Probab=99.29  E-value=3.9e-12  Score=85.73  Aligned_cols=73  Identities=14%  Similarity=0.281  Sum_probs=58.2

Q ss_pred             hHHHHHHHHhhhcCCCCCCCC-CceEEeeC-cchHHhhhCCcccc---CCccceeEEEECCCCCEEEEEec-cCCCCCCH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDL-KYPLLADF-KKEIATSYGVLIES---AGIPLRGLFIIDTKGVLRQITVN-DLPVGRSV   78 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l-~fpllsD~-~~~vak~ygv~~~~---~G~~~ratfiID~~G~V~~~~~~-~~~~~~~~   78 (105)
                      ++++++|+++        .++ +||+++|. ++.++++||+....   .|...|++||||++|+|++.+.+ .....+++
T Consensus        86 ~~~~~~~~~~--------~~~~~~~~l~D~~~~~~~~~~gv~~~~~~~~g~~~p~~~liD~~G~i~~~~~~~~~~~~~~~  157 (165)
T 1q98_A           86 PFAQARFCGA--------EGIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPNY  157 (165)
T ss_dssp             HHHHTTCTTT--------TTCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCCH
T ss_pred             HHHHHHHHHH--------cCCCceEEeeccccchHHHHhCceecccccCCccceeEEEEcCCCEEEEEEeCCCCCCCCCH
Confidence            4567788865        267 79999998 89999999997532   25557999999999999999986 34556789


Q ss_pred             HHHHHHH
Q psy13875         79 EEVLRLV   85 (105)
Q Consensus        79 ~eil~~l   85 (105)
                      +++++.|
T Consensus       158 ~~~l~~l  164 (165)
T 1q98_A          158 EAALAVL  164 (165)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhh
Confidence            9988765

>2pwj_A Mitochondrial peroxiredoxin; alpha and beta protein, oxidoreductase; 2.80A {Pisum sativum}

Probab=99.29  E-value=6.1e-12  Score=85.98  Aligned_cols=73  Identities=18%  Similarity=0.278  Sum_probs=55.2

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC----Cc-cceeEEEECCCCCEEEEEeccCCCC---C
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA----GI-PLRGLFIIDTKGVLRQITVNDLPVG---R   76 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~----G~-~~ratfiID~~G~V~~~~~~~~~~~---~   76 (105)
                      ++++++|+++.     ++ .++||+|+|.+++++++||+..+..    |+ ..|.+|||| +|+|++++++..+.+   .
T Consensus        90 ~~~~~~~~~~~-----~~-~~~fp~l~D~~~~~~~~ygv~~~~~~~~~g~~~~~~t~~I~-~G~I~~~~~~~~~~~~~~~  162 (171)
T 2pwj_A           90 PYTVNAWAEKI-----QA-KDAIEFYGDFDGSFHKSLELTTDLSAGLLGIRSERWSAYVV-DGKVKALNVEESPSDVKVS  162 (171)
T ss_dssp             HHHHHHHHHHT-----TC-TTTSEEEECTTCHHHHHHTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECSSTTCCSSS
T ss_pred             HHHHHHHHHHh-----CC-CCceEEEECCccHHHHHhCCccccccccCCcccceeEEEEE-CCEEEEEEeecCCCCCccc
Confidence            56899999873     22 2489999999999999999985431    32 368999999 999999999876543   3


Q ss_pred             CHHHHHHH
Q psy13875         77 SVEEVLRL   84 (105)
Q Consensus        77 ~~~eil~~   84 (105)
                      +.+++|+.
T Consensus       163 ~~~~il~~  170 (171)
T 2pwj_A          163 GAETILGQ  170 (171)
T ss_dssp             SHHHHHHH
T ss_pred             CHHHHHhc
Confidence            56666554

>2jsy_A Probable thiol peroxidase; solution structure, antioxidant, oxidoreductase; NMR {Bacillus subtilis} PDB: 2jsz_A

Probab=99.23  E-value=1.4e-11  Score=82.54  Aligned_cols=76  Identities=18%  Similarity=0.294  Sum_probs=60.4

Q ss_pred             HHHHHHHHhhhcCCCCCCCC-CceEEee-CcchHHhhhCCccccCCccceeEEEECCCCCEEEEEecc-CCCCCCHHHHH
Q psy13875          6 EGDEVWLEDVKQGDGGLGDL-KYPLLAD-FKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVND-LPVGRSVEEVL   82 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l-~fpllsD-~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~-~~~~~~~~eil   82 (105)
                      +..++|+++        .++ +||+++| .+++++++||+.....|+..|++||||++|+|++++.+. .....+.++++
T Consensus        88 ~~~~~~~~~--------~~~~~~~~~~d~~~~~~~~~~~v~~~~~g~~~p~~~lid~~G~i~~~~~g~~~~~~~~~~~l~  159 (167)
T 2jsy_A           88 FAQARWCGA--------NGIDKVETLSDHRDMSFGEAFGVYIKELRLLARSVFVLDENGKVVYAEYVSEATNHPNYEKPI  159 (167)
T ss_dssp             GGTSCCGGG--------SSCTTEEEEEGGGTCHHHHHTTCBBTTTCSBCCEEEEECTTSCEEEEEECSBTTSCCCSHHHH
T ss_pred             HHHHHHHHh--------cCCCCceEeeCCchhHHHHHhCCccccCCceeeEEEEEcCCCcEEEEEecCCcCCCCCHHHHH
Confidence            345667755        267 8999999 889999999998544465679999999999999999864 33455789999


Q ss_pred             HHHHhhh
Q psy13875         83 RLVKAFQ   89 (105)
Q Consensus        83 ~~l~~l~   89 (105)
                      +.|++|.
T Consensus       160 ~~l~~ll  166 (167)
T 2jsy_A          160 EAAKALV  166 (167)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHhh
Confidence            9998764

>1xvq_A Thiol peroxidase; thioredoxin fold, structural genomics, PSI, protein structur initiative, TB structural genomics consortium, TBSGC; 1.75A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 1y25_A

Probab=99.16  E-value=7.7e-11  Score=80.10  Aligned_cols=75  Identities=17%  Similarity=0.271  Sum_probs=56.5

Q ss_pred             hHHHHHHHHhhhcCCCCCCCC-CceEEeeCcchHHhhhCCcccc---CCccceeEEEECCCCCEEEEEec-cCCCCCCHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDL-KYPLLADFKKEIATSYGVLIES---AGIPLRGLFIIDTKGVLRQITVN-DLPVGRSVE   79 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l-~fpllsD~~~~vak~ygv~~~~---~G~~~ratfiID~~G~V~~~~~~-~~~~~~~~~   79 (105)
                      +++.++|+++.        ++ +||+++|.++.++++||+....   .|...|++||||++|+|++++.+ ......+.+
T Consensus        86 ~~~~~~~~~~~--------~~~~~~~l~D~~~~~~~~~gv~~~~~~~~g~~~p~~~lid~~G~I~~~~~g~~~~~~~~~~  157 (175)
T 1xvq_A           86 PFAQKRFCGAE--------GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYE  157 (175)
T ss_dssp             HHHHTTCC--------------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHH
T ss_pred             HHHHHHHHHHc--------CCCCceEeeCCHHHHHHHhCCcccccccCCcccceEEEECCCCeEEEEEECCCcCCCCCHH
Confidence            35567787652        66 8999999999999999997532   35567999999999999999985 444556888


Q ss_pred             HHHHHHHh
Q psy13875         80 EVLRLVKA   87 (105)
Q Consensus        80 eil~~l~~   87 (105)
                      ++++.+++
T Consensus       158 ~~l~~l~~  165 (175)
T 1xvq_A          158 AALAALGA  165 (175)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            88888764

>2wfc_A Peroxiredoxin 5, PRDX5; oxidoreductase, antioxidant enzymes; 1.75A {Arenicola marina}

Probab=99.15  E-value=5.8e-11  Score=80.96  Aligned_cols=72  Identities=17%  Similarity=0.223  Sum_probs=54.6

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCC--ceEEeeCcchHHhhhCCcccc---CC--ccceeEEEECCCCCEEEEEeccCCCCCC
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLK--YPLLADFKKEIATSYGVLIES---AG--IPLRGLFIIDTKGVLRQITVNDLPVGRS   77 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~--fpllsD~~~~vak~ygv~~~~---~G--~~~ratfiID~~G~V~~~~~~~~~~~~~   77 (105)
                      ++++++|+++.        +++  ||+|+|.+++++++||+....   .|  .+.|+|||| ++|+|+++++++.....+
T Consensus        78 ~~~~~~~~~~~--------~~~~~fp~l~D~~~~~~~~~gv~~~~~~~~g~~~~~p~t~lI-~~G~I~~~~~~~~~~~~~  148 (167)
T 2wfc_A           78 SFVMDAWGKAH--------GADDKVQMLADPGGAFTKAVDMELDLSAVLGNVRSKRYSLVI-EDGVVTKVNVEPDGKGLT  148 (167)
T ss_dssp             HHHHHHHHHHT--------TCTTTSEEEECTTSHHHHHTTCEECCHHHHSSCEECCEEEEE-ETTEEEEEEECTTSSSSS
T ss_pred             HHHHHHHHHhc--------CCCcceEEEECCCCcHHHHcCCccccccccCcccceEEEEEE-eCCEEEEEEecCCCCcce
Confidence            56899999873        567  999999999999999997431   12  246999999 999999999987554433


Q ss_pred             ---HHHHHHHH
Q psy13875         78 ---VEEVLRLV   85 (105)
Q Consensus        78 ---~~eil~~l   85 (105)
                         .+.+|+.|
T Consensus       149 ~~~~~~~~~~~  159 (167)
T 2wfc_A          149 CSLAPNILSQL  159 (167)
T ss_dssp             TTSHHHHHHHH
T ss_pred             eccHHHHHHHh
Confidence               44454444

>2a4v_A Peroxiredoxin DOT5; yeast nuclear thiol peroxidase, atypical 2-Cys peroxiredoxin, oxidoreductase; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10

Probab=99.08  E-value=1.7e-10  Score=76.84  Aligned_cols=72  Identities=26%  Similarity=0.350  Sum_probs=53.6

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCcccc-CCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIES-AGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~-~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      ++.+++|+++.        +++||+++|.+++++++||+.... .| ..|++||| ++|+|++++.+..+ ..+.+++++
T Consensus        79 ~~~~~~~~~~~--------~~~~~~l~D~~~~~~~~~gv~~~p~~g-~~~~~~li-~~G~i~~~~~g~~~-~~~~~~~~~  147 (159)
T 2a4v_A           79 VTSQKKFQSKQ--------NLPYHLLSDPKREFIGLLGAKKTPLSG-SIRSHFIF-VDGKLKFKRVKISP-EVSVNDAKK  147 (159)
T ss_dssp             HHHHHHHHHHH--------TCSSEEEECTTCHHHHHHTCBSSSSSC-BCCEEEEE-ETTEEEEEEESCCH-HHHHHHHHH
T ss_pred             HHHHHHHHHHh--------CCCceEEECCccHHHHHhCCcccccCC-ccceEEEE-cCCEEEEEEccCCc-cccHHHHHH
Confidence            56789999873        679999999999999999997432 24 46899999 99999999986432 223444444


Q ss_pred             HHHh
Q psy13875         84 LVKA   87 (105)
Q Consensus        84 ~l~~   87 (105)
                      .|.+
T Consensus       148 ~l~~  151 (159)
T 2a4v_A          148 EVLE  151 (159)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4433

>3eyt_A Uncharacterized protein SPOA0173; thioredoxin-like superfamily protein SPOA0173, silicibacter DSS, structural genomics, PSI-2; 1.95A {Silicibacter pomeroyi}

Probab=98.99  E-value=2.9e-09  Score=69.96  Aligned_cols=68  Identities=21%  Similarity=0.287  Sum_probs=56.3

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcc-----hHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCH
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKK-----EIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV   78 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~-----~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~   78 (105)
                      ..+..++|+++.        +++||++.|.++     .+++.||+.    +  .|++||||++|+|++.+.+..    +.
T Consensus        79 ~~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~~~v~----~--~P~~~lid~~G~i~~~~~g~~----~~  140 (158)
T 3eyt_A           79 TPISLKAFLHEY--------RIKFPVGVDQPGDGAMPRTMAAYQMR----G--TPSLLLIDKAGDLRAHHFGDV----SE  140 (158)
T ss_dssp             CHHHHHHHHHHT--------TCCSCEEEECCCSSSSCHHHHHTTCC----S--SSEEEEECTTSEEEEEEESCC----CH
T ss_pred             CHHHHHHHHHHc--------CCCceEEEcCccchhhHHHHHHcCCC----C--CCEEEEECCCCCEEEEEeCCC----CH
Confidence            356788888772        789999999988     799999987    3  699999999999999998754    57


Q ss_pred             HHHHHHHHhhh
Q psy13875         79 EEVLRLVKAFQ   89 (105)
Q Consensus        79 ~eil~~l~~l~   89 (105)
                      +++.+.|+++.
T Consensus       141 ~~l~~~i~~ll  151 (158)
T 3eyt_A          141 LLLGAEIATLL  151 (158)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            77888887764

>2f9s_A Thiol-disulfide oxidoreductase RESA; thioredoxin-like protein; HET: MSE; 1.40A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1st9_A 1su9_A 2h1d_A 2h1b_A 2h1a_A 2h19_A 2h1g_A 3c71_A 3c73_A

Probab=98.97  E-value=3.7e-09  Score=69.11  Aligned_cols=68  Identities=12%  Similarity=0.323  Sum_probs=56.3

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++..++|+++.        +++||+++|.++.+++.||+.    +  .|++||||++|+|++.+.+..    +.+++.+.
T Consensus        71 ~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~v~----~--~P~~~lid~~G~i~~~~~G~~----~~~~l~~~  132 (151)
T 2f9s_A           71 KIAVHNFMKSY--------GVNFPVVLDTDRQVLDAYDVS----P--LPTTFLINPEGKVVKVVTGTM----TESMIHDY  132 (151)
T ss_dssp             HHHHHHHHHHH--------TCCSCEEEETTSHHHHHTTCC----S--SCEEEEECTTSEEEEEEESCC----CHHHHHHH
T ss_pred             HHHHHHHHHHc--------CCCceEEECCchHHHHhcCCC----C--CCeEEEECCCCcEEEEEeCCC----CHHHHHHH
Confidence            35667888763        679999999999999999987    3  699999999999999988643    67888888


Q ss_pred             HHhhhh
Q psy13875         85 VKAFQF   90 (105)
Q Consensus        85 l~~l~~   90 (105)
                      |+++..
T Consensus       133 l~~ll~  138 (151)
T 2f9s_A          133 MNLIKP  138 (151)
T ss_dssp             HHHHSC
T ss_pred             HHHHHh
Confidence            887653

>3lor_A Thiol-disulfide isomerase and thioredoxins; PSI, MCSG, structural genomics, midwest CE structural genomics; HET: MSE; 2.20A {Corynebacterium glutamicum}

Probab=98.97  E-value=4.2e-09  Score=69.18  Aligned_cols=68  Identities=21%  Similarity=0.416  Sum_probs=56.0

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcch------HHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCC
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKE------IATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRS   77 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~------vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~   77 (105)
                      .++..++|+++.        +++||++.|.++.      +++.||+.    +  .|++||||++|+|++.+.+..    +
T Consensus        81 ~~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~~~~v~----~--~P~~~lid~~G~i~~~~~g~~----~  142 (160)
T 3lor_A           81 TPEALKVFIDEF--------GIKFPVAVDMPREGQRIPSTMKKYRLE----G--TPSIILADRKGRIRQVQFGQV----D  142 (160)
T ss_dssp             CHHHHHHHHHHT--------TCCSCEEEECCCTTCSSCHHHHHTTCC----S--SSEEEEECTTSBEEEEEESCC----C
T ss_pred             CHHHHHHHHHHc--------CCCCcEEECCccccchhhhHHHhcccC----c--cceEEEECCCCcEEEEecCcC----C
Confidence            346778888762        7899999999988      99999987    3  699999999999999998754    5


Q ss_pred             HHHHHHHHHhhh
Q psy13875         78 VEEVLRLVKAFQ   89 (105)
Q Consensus        78 ~~eil~~l~~l~   89 (105)
                      .+++.+.|+++-
T Consensus       143 ~~~l~~~i~~ll  154 (160)
T 3lor_A          143 DFVLGLLLGSLL  154 (160)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            677777777654

>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}

Probab=98.96  E-value=4.1e-09  Score=68.85  Aligned_cols=72  Identities=21%  Similarity=0.334  Sum_probs=56.8

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      .+..++|+++.        +++||+++|.++.+++.||+.      ..|++||||++|+|++.+.+...  .+.+++.+.
T Consensus        74 ~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~~--~~~~~l~~~  137 (154)
T 3kcm_A           74 KVAVEEFFRKT--------GFTLPVLLDADKRVGKLYGTT------GVPETFVIDRHGVILKKVVGAME--WDHPEVIAF  137 (154)
T ss_dssp             HHHHHHHHHHH--------CCCCCEEECTTCHHHHHHTCC------SBCEEEEECTTSBEEEEEESCCC--TTSHHHHHH
T ss_pred             hHHHHHHHHHc--------CCCeeEEecCchHHHHHhCCC------CCCeEEEECCCCcEEEEEcCCCc--cccHHHHHH
Confidence            45677888763        779999999999999999987      36999999999999999987542  356788888


Q ss_pred             HHhhhhhh
Q psy13875         85 VKAFQFVD   92 (105)
Q Consensus        85 l~~l~~~~   92 (105)
                      |+++....
T Consensus       138 l~~l~~~~  145 (154)
T 3kcm_A          138 LNNELSKA  145 (154)
T ss_dssp             HHTC----
T ss_pred             HHHHHHHh
Confidence            88876543

>3u5r_E Uncharacterized protein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, hypothetical protein; 2.05A {Sinorhizobium meliloti}

Probab=98.91  E-value=7.4e-09  Score=72.72  Aligned_cols=73  Identities=18%  Similarity=0.141  Sum_probs=56.8

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCC-----CCCCH
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLP-----VGRSV   78 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~-----~~~~~   78 (105)
                      .++..++|+++.        +++||+++|.++.++++||+.      ..|++||||++|+|++.......     .....
T Consensus       110 ~~~~~~~~~~~~--------~~~~~~l~D~~~~~~~~~~v~------~~P~~~liD~~G~i~~~g~~d~~~~~~~~~~~~  175 (218)
T 3u5r_E          110 TLERVGAEVKAY--------GYGFPYLKDASQSVAKAYGAA------CTPDFFLYDRERRLVYHGQFDDARPGNGKDVTG  175 (218)
T ss_dssp             SHHHHHHHHHHH--------TCCSCEEECTTCHHHHHHTCC------EESEEEEECTTCBEEEEECSSSCCTTSCCCCCC
T ss_pred             CHHHHHHHHHHh--------CCCccEEECCccHHHHHcCCC------CCCeEEEECCCCcEEEeccccccccccccccCH
Confidence            456788999773        789999999999999999987      36999999999999987643221     12346


Q ss_pred             HHHHHHHHhhhh
Q psy13875         79 EEVLRLVKAFQF   90 (105)
Q Consensus        79 ~eil~~l~~l~~   90 (105)
                      +++.++|+++..
T Consensus       176 ~~l~~~i~~ll~  187 (218)
T 3u5r_E          176 ADLRAAVDAVLK  187 (218)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHc
Confidence            778888877653

>2ywi_A Hypothetical conserved protein; uncharacterized conserved protein, NPPSFA, national project protein structural and functional analyses; 1.60A {Geobacillus kaustophilus}

Probab=98.91  E-value=8e-09  Score=70.30  Aligned_cols=73  Identities=18%  Similarity=0.139  Sum_probs=57.3

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccC-----CCCCCH
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDL-----PVGRSV   78 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~-----~~~~~~   78 (105)
                      .++..++|+++.        +++||+++|.++.+++.||+.      ..|++||||++|+|++.+....     ....+.
T Consensus        97 ~~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~~~~~~~~~g~~~~  162 (196)
T 2ywi_A           97 SPENMKKVAEEL--------GYPFPYLYDETQEVAKAYDAA------CTPDFYIFDRDLKCVYRGQLDDSRPNNGIPVTG  162 (196)
T ss_dssp             SHHHHHHHHHHH--------TCCSCEEECSSCHHHHHHTCC------EESEEEEEETTCBEEEEECSSSCCTTTCCCCCC
T ss_pred             CHHHHHHHHHHc--------CCCceEEECCchHHHHHhCCC------CCCeEEEEcCCCeEEEccccCcccccccCccCH
Confidence            356788888773        779999999999999999986      3699999999999999875321     112367


Q ss_pred             HHHHHHHHhhhh
Q psy13875         79 EEVLRLVKAFQF   90 (105)
Q Consensus        79 ~eil~~l~~l~~   90 (105)
                      +++.+.|+++..
T Consensus       163 ~~l~~~i~~ll~  174 (196)
T 2ywi_A          163 ESIRAALDALLE  174 (196)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            888888887653

>4evm_A Thioredoxin family protein; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.51A {Streptococcus pneumoniae}

Probab=98.89  E-value=9.2e-09  Score=64.94  Aligned_cols=65  Identities=22%  Similarity=0.359  Sum_probs=52.5

Q ss_pred             HHHHHHHHhhhcCCCCCCCC-CceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          6 EGDEVWLEDVKQGDGGLGDL-KYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l-~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ...++|.++        .++ +||+++|.++.+++.||+.    +  .|++||||++|+|++.+.+..    +.+++.+.
T Consensus        72 ~~~~~~~~~--------~~~~~~~~~~d~~~~~~~~~~v~----~--~P~~~lid~~G~i~~~~~g~~----~~~~l~~~  133 (138)
T 4evm_A           72 ADFKNWYKG--------LDYKNLPVLVDPSGKLLETYGVR----S--YPTQAFIDKEGKLVKTHPGFM----EKDAILQT  133 (138)
T ss_dssp             HHHHHHHTT--------CCCTTCCEEECTTCHHHHHTTCC----S--SSEEEEECTTCCEEEEEESCC----CHHHHHHH
T ss_pred             HHHHHHHhh--------cCCCCeeEEECcchHHHHHcCcc----c--CCeEEEECCCCcEEEeecCCC----cHHHHHHH
Confidence            445566644        145 8999999999999999987    3  699999999999999998643    57888888


Q ss_pred             HHhh
Q psy13875         85 VKAF   88 (105)
Q Consensus        85 l~~l   88 (105)
                      |+++
T Consensus       134 l~~l  137 (138)
T 4evm_A          134 LKEL  137 (138)
T ss_dssp             HHHC
T ss_pred             HHhh
Confidence            8765

>3gl3_A Putative thiol:disulfide interchange protein DSBE; oxidoreductase, PSI-II, structural genomics, protein structure initiative; 2.09A {Chlorobium tepidum tls}

Probab=98.89  E-value=1.3e-08  Score=66.21  Aligned_cols=68  Identities=19%  Similarity=0.167  Sum_probs=55.6

Q ss_pred             HHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875          6 EGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV   85 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l   85 (105)
                      +..++|.++        .+++||+++|.++.+++.||+.      ..|++||||++|+|++.+.+..  ..+.+++.+.|
T Consensus        74 ~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~--~~~~~~l~~~i  137 (152)
T 3gl3_A           74 GDAMKFLAQ--------VPAEFTVAFDPKGQTPRLYGVK------GMPTSFLIDRNGKVLLQHVGFR--PADKEALEQQI  137 (152)
T ss_dssp             HHHHHHHHH--------SCCCSEEEECTTCHHHHHTTCC------SSSEEEEECTTSBEEEEEESCC--TTTHHHHHHHH
T ss_pred             HHHHHHHHH--------cCCCCceeECCcchhHHHcCCC------CCCeEEEECCCCCEEEEEccCC--CcCHHHHHHHH
Confidence            456677766        2779999999999999999987      3699999999999999998743  34678888888


Q ss_pred             Hhhh
Q psy13875         86 KAFQ   89 (105)
Q Consensus        86 ~~l~   89 (105)
                      +++.
T Consensus       138 ~~~~  141 (152)
T 3gl3_A          138 LAAL  141 (152)
T ss_dssp             HHHT
T ss_pred             HHHH
Confidence            7764

>3raz_A Thioredoxin-related protein; structural genomics, PSI-2, protein structure initiative; 2.00A {Neisseria meningitidis serogroup B}

Probab=98.84  E-value=1.2e-08  Score=66.80  Aligned_cols=70  Identities=17%  Similarity=0.175  Sum_probs=54.5

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCc---chHHhhhC--CccccCCccceeEEEECCCCCEEEEEeccCCCCCCHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFK---KEIATSYG--VLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVE   79 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~---~~vak~yg--v~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~   79 (105)
                      ++..++|+++        .+++||++.|..   ..+++.||  +.      ..|++||||++|+|++.+.+..    +.+
T Consensus        68 ~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~  129 (151)
T 3raz_A           68 SDNIGNFLKQ--------TPVSYPIWRYTGANSRNFMKTYGNTVG------VLPFTVVEAPKCGYRQTITGEV----NEK  129 (151)
T ss_dssp             HHHHHHHHHH--------SCCSSCEEEECCSCHHHHHHTTTCCSC------CSSEEEEEETTTTEEEECCSCC----CHH
T ss_pred             hHHHHHHHHH--------cCCCCceEecCccchHHHHHHhCCccC------CCCEEEEECCCCcEEEEECCCC----CHH
Confidence            3567888876        278999999874   56889999  44      3699999999999999987644    578


Q ss_pred             HHHHHHHhhhhhh
Q psy13875         80 EVLRLVKAFQFVD   92 (105)
Q Consensus        80 eil~~l~~l~~~~   92 (105)
                      ++.+.|+++....
T Consensus       130 ~l~~~l~~l~~~~  142 (151)
T 3raz_A          130 SLTDAVKLAHSKC  142 (151)
T ss_dssp             HHHHHHHHHHTC-
T ss_pred             HHHHHHHHHHHHh
Confidence            8888888876543

>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10

Probab=98.84  E-value=2.2e-08  Score=63.63  Aligned_cols=68  Identities=18%  Similarity=0.169  Sum_probs=53.6

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      .+..++|+++.        +++||+++|.++.+++.||+.    +  .|++||||++|+|+ .+.. .....+.+++.+.
T Consensus        67 ~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~i~----~--~P~~~lid~~G~i~-~~~~-~~g~~~~~~l~~~  130 (136)
T 1lu4_A           67 VGAMQSFVSKY--------NLNFTNLNDADGVIWARYNVP----W--QPAFVFYRADGTST-FVNN-PTAAMSQDELSGR  130 (136)
T ss_dssp             HHHHHHHHHHH--------TCCSEEEECTTSHHHHHTTCC----S--SSEEEEECTTSCEE-EECC-SSSCCCHHHHHHH
T ss_pred             HHHHHHHHHHc--------CCCceEEECCchhHHHhcCCC----C--CCEEEEECCCCcEE-EEEc-CCCccCHHHHHHH
Confidence            45677788663        779999999999999999986    3  69999999999999 7761 1112368888888


Q ss_pred             HHhh
Q psy13875         85 VKAF   88 (105)
Q Consensus        85 l~~l   88 (105)
                      |+++
T Consensus       131 l~~l  134 (136)
T 1lu4_A          131 VAAL  134 (136)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            8765

>2b5x_A YKUV protein, TRXY; thioredoxin-like, oxidoreductase; NMR {Bacillus subtilis} SCOP: c.47.1.10 PDB: 2b5y_A

Probab=98.83  E-value=2.2e-08  Score=64.41  Aligned_cols=67  Identities=12%  Similarity=0.215  Sum_probs=54.7

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++..++|+++.        +++||++.|.++.+++.||+.    +  .|++||||++|+|++.+.+..    +.+++.+.
T Consensus        78 ~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~v~----~--~P~~~lid~~G~i~~~~~g~~----~~~~l~~~  139 (148)
T 2b5x_A           78 PGKIKETAAEH--------DITQPIFVDSDHALTDAFENE----Y--VPAYYVFDKTGQLRHFQAGGS----GMKMLEKR  139 (148)
T ss_dssp             HHHHHHHHHHT--------TCCSCEEECSSCHHHHHTCCC----C--SSEEEEECTTCBEEEEEESCS----TTHHHHHH
T ss_pred             HHHHHHHHHHc--------CCCcceEECCchhHHHHhCCC----C--CCEEEEECCCCcEEEEecCCC----CHHHHHHH
Confidence            45677888662        779999999999999999987    3  699999999999999988743    56677777


Q ss_pred             HHhhh
Q psy13875         85 VKAFQ   89 (105)
Q Consensus        85 l~~l~   89 (105)
                      |+++.
T Consensus       140 l~~~l  144 (148)
T 2b5x_A          140 VNRVL  144 (148)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>2hyx_A Protein DIPZ; thioredoxin fold, jelly-roll, structural genomics, TB struct genomics consortium, TBSGC, unknown function; 1.90A {Mycobacterium tuberculosis}

Probab=98.83  E-value=2e-08  Score=76.19  Aligned_cols=70  Identities=17%  Similarity=0.196  Sum_probs=57.5

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++..++|+++.        +++||+++|.+..+++.|++.      ..|++||||++|+|++.+.+..    +.+++.+.
T Consensus       132 ~~~~~~~~~~~--------~l~fpv~~D~~~~l~~~ygV~------~~Pt~~lID~~G~Iv~~~~G~~----~~~~l~~~  193 (352)
T 2hyx_A          132 PGNVAKGAANL--------GISYPIALDNNYATWTNYRNR------YWPAEYLIDATGTVRHIKFGEG----DYNVTETL  193 (352)
T ss_dssp             HHHHHHHHHHH--------TCCSCEEECTTSHHHHHTTCC------EESEEEEECTTSBEEEEEESBC----CHHHHHHH
T ss_pred             HHHHHHHHHHc--------CCCccEEeCCcHHHHHHcCCC------ccCEEEEEeCCCeEEEEEcCCC----CHHHHHHH
Confidence            45677888763        789999999999999999986      3699999999999999998743    57788888


Q ss_pred             HHhhhhhh
Q psy13875         85 VKAFQFVD   92 (105)
Q Consensus        85 l~~l~~~~   92 (105)
                      |+++....
T Consensus       194 I~~lL~e~  201 (352)
T 2hyx_A          194 VRQLLNDA  201 (352)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhc
Confidence            87765433

>1xzo_A BSSCO, hypothetical protein YPMQ; thioredoxin-like fold, structural genomics, montreal-kingsto bacterial structural genomics initiative, BSGI; 1.70A {Bacillus subtilis} SCOP: c.47.1.10 PDB: 1on4_A

Probab=98.82  E-value=1.4e-08  Score=67.69  Aligned_cols=76  Identities=8%  Similarity=0.143  Sum_probs=56.9

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCc---eEEeeCcchHHhhhCCcc-----c--c--C-CccceeEEEECCCCCEEEEEec
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKY---PLLADFKKEIATSYGVLI-----E--S--A-GIPLRGLFIIDTKGVLRQITVN   70 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~f---pllsD~~~~vak~ygv~~-----~--~--~-G~~~ratfiID~~G~V~~~~~~   70 (105)
                      .++.+++|+++        .+++|   ++++|.+++++++|++..     .  .  . ....|++||||++|+|++++.+
T Consensus        83 ~~~~~~~~~~~--------~~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~lid~~G~i~~~~~g  154 (174)
T 1xzo_A           83 KPKQLKKFAAN--------YPLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNG  154 (174)
T ss_dssp             CHHHHHHHHTT--------SCCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEES
T ss_pred             CHHHHHHHHHH--------cCCCCcceEEEeCCCHHHHHHHHHhhcCeeEeecCCCCeeeeeeEEEEECCCCeEEEEEcC
Confidence            35678888865        26788   999999999988886410     0  0  0 1357899999999999999987


Q ss_pred             cCCCCCCHHHHHHHHHhhh
Q psy13875         71 DLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        71 ~~~~~~~~~eil~~l~~l~   89 (105)
                      ...  .+.+++++.|++|.
T Consensus       155 ~~~--~~~~~l~~~l~~ll  171 (174)
T 1xzo_A          155 VEN--TPYDDIISDVKSAS  171 (174)
T ss_dssp             SSS--CCHHHHHHHHHHHT
T ss_pred             CCC--CCHHHHHHHHHHHH
Confidence            542  46889999888764

>3erw_A Sporulation thiol-disulfide oxidoreductase A; thioredoxin-like fold, RESA-like fold, dithiol, STOA, redox-active center; 2.50A {Bacillus subtilis} SCOP: c.47.1.0

Probab=98.81  E-value=2.5e-08  Score=63.92  Aligned_cols=63  Identities=17%  Similarity=0.452  Sum_probs=51.7

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      .+..++|.++        .+++||+++|.++.+++.||+.      ..|++||||++|+|++.+.+..    +.+++.+.
T Consensus        82 ~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~  143 (145)
T 3erw_A           82 QQVVEDFIKA--------NKLTFPIVLDSKGELMKEYHII------TIPTSFLLNEKGEIEKTKIGPM----TAEQLKEW  143 (145)
T ss_dssp             HHHHHHHHHH--------TTCCSCEEECSSSHHHHHTTCC------EESEEEEECTTCCEEEEEESCC----CHHHHHHH
T ss_pred             HHHHHHHHHH--------cCCceeEEEcCchhHHHhcCcC------ccCeEEEEcCCCcEEEEEcCCc----CHHHHHHh
Confidence            4566777766        2789999999999999999987      3799999999999999998743    56677665


Q ss_pred             H
Q psy13875         85 V   85 (105)
Q Consensus        85 l   85 (105)
                      |
T Consensus       144 l  144 (145)
T 3erw_A          144 T  144 (145)
T ss_dssp             H
T ss_pred             h
Confidence            5

>1jfu_A Thiol:disulfide interchange protein TLPA; thioredoxin-like, double disulfide bridge, membrane protein; 1.60A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.81  E-value=1.5e-08  Score=68.48  Aligned_cols=72  Identities=15%  Similarity=0.285  Sum_probs=56.8

Q ss_pred             HHHHHHHHhhhcCCCCCCCC-CceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          6 EGDEVWLEDVKQGDGGLGDL-KYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l-~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      +..++|+++.        ++ .||+++|.++.+++.||+....  ...|++||||++|+|++.+.+..  ..+.+++++.
T Consensus       107 ~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~~~--~~~P~~~lid~~G~i~~~~~g~~--~~~~~~l~~~  174 (186)
T 1jfu_A          107 EKPKTFLKEA--------NLTRLGYFNDQKAKVFQDLKAIGRA--LGMPTSVLVDPQGCEIATIAGPA--EWASEDALKL  174 (186)
T ss_dssp             THHHHHHHHT--------TCCTTCCEECTTCHHHHHHHTTTCC--SSSSEEEEECTTSBEEEEEESCC--CTTSHHHHHH
T ss_pred             HHHHHHHHHc--------CCCCCceEECCcchHHHHhcccccc--CCCCEEEEECCCCCEEEEEecCC--ccCHHHHHHH
Confidence            5678898762        56 5999999999999999986321  24799999999999999998753  2356788888


Q ss_pred             HHhhh
Q psy13875         85 VKAFQ   89 (105)
Q Consensus        85 l~~l~   89 (105)
                      |+++.
T Consensus       175 l~~ll  179 (186)
T 1jfu_A          175 IRAAT  179 (186)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            87765

>3hdc_A Thioredoxin family protein; ATCC53774, DSM 7210, , structural genomics, PSI-2, protein structure initiative; 1.77A {Geobacter metallireducens gs-15}

Probab=98.81  E-value=8e-09  Score=68.30  Aligned_cols=61  Identities=23%  Similarity=0.440  Sum_probs=50.7

Q ss_pred             CCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhhhhh
Q psy13875         24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQFVD   92 (105)
Q Consensus        24 ~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~~~~   92 (105)
                      +++||+++|.++.+++.||+.      ..|++||||++|+|++.+.|..  ..+..++++.+.+.+...
T Consensus        94 ~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~G~~--~~~~~~~~~~~~~~~~~~  154 (158)
T 3hdc_A           94 PVSFNFLSDATGQVQQRYGAN------RLPDTFIVDRKGIIRQRVTGGI--EWDAPKVVSYLKSLEGHH  154 (158)
T ss_dssp             CCSCEEEECTTSHHHHHTTCC------SSSEEEEECTTSBEEEEEESCC--CTTSHHHHHHHHTTC---
T ss_pred             CCCceEEECchHHHHHHhCCC------CcceEEEEcCCCCEEEEEeCCC--ccchHHHHHHHHhhcccc
Confidence            779999999999999999987      3699999999999999998764  346788888888766543

>3kh7_A Thiol:disulfide interchange protein DSBE; TRX-like, thiol-disulfide exchange, cell inner membrane, CYT C-type biogenesis, disulfide bond; 1.75A {Pseudomonas aeruginosa} PDB: 3kh9_A

Probab=98.80  E-value=9.4e-09  Score=69.73  Aligned_cols=66  Identities=18%  Similarity=0.380  Sum_probs=51.7

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCce-EEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYP-LLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fp-llsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      ++..++|+++.        +++|+ +++|.++.+++.||+.    +  .|++||||++|+|++.+.+..    +.+++.+
T Consensus        99 ~~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~v~----~--~P~~~lid~~G~i~~~~~g~~----~~~~l~~  160 (176)
T 3kh7_A           99 NAAAIKWLNEL--------HNPYLLSISDADGTLGLDLGVY----G--APETYLIDKQGIIRHKIVGVV----DQKVWRE  160 (176)
T ss_dssp             HHHHHHHHHHT--------TCCCSEEEEETTCHHHHHHTCC----S--SCEEEEECTTCBEEEEEESCC----CHHHHHH
T ss_pred             HHHHHHHHHHc--------CCCCceEEECCcchHHHHcCCC----C--CCeEEEECCCCeEEEEEcCCC----CHHHHHH
Confidence            45677888762        67888 5899999999999987    3  699999999999999998754    4555555


Q ss_pred             HHHhh
Q psy13875         84 LVKAF   88 (105)
Q Consensus        84 ~l~~l   88 (105)
                      .|+++
T Consensus       161 ~l~~~  165 (176)
T 3kh7_A          161 QLAPL  165 (176)
T ss_dssp             HTHHH
T ss_pred             HHHHH
Confidence            55443

>2cvb_A Probable thiol-disulfide isomerase/thioredoxin; redox protein, structural genomics, riken struc genomics/proteomics initiative, RSGI; 1.80A {Thermus thermophilus} SCOP: c.47.1.10 PDB: 2ywo_A

Probab=98.80  E-value=2.1e-08  Score=68.01  Aligned_cols=69  Identities=20%  Similarity=0.337  Sum_probs=53.1

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCC------CCCCH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLP------VGRSV   78 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~------~~~~~   78 (105)
                      .+..++|+++.        +++||+++|.++++++.||+.      ..|++||||++|+|++.  +...      ...+.
T Consensus        84 ~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~~--g~~~~~~~~~g~~~~  147 (188)
T 2cvb_A           84 PEKMAAFAEEH--------GIFFPYLLDETQEVAKAYRAL------RTPEVFLFDERRLLRYH--GRVNDNPKDPSKVQS  147 (188)
T ss_dssp             HHHHHHHHHHH--------TCCSCEEECSSSHHHHHTTCC------EESEEEEECTTCBEEEE--ECSSSCTTCGGGCCC
T ss_pred             HHHHHHHHHHh--------CCCceEEECCcchHHHHcCCC------CCCeEEEECCCCcEEEE--EecCCccccccccCH
Confidence            46778888773        679999999999999999987      36999999999999988  3221      11245


Q ss_pred             HHHHHHHHhhh
Q psy13875         79 EEVLRLVKAFQ   89 (105)
Q Consensus        79 ~eil~~l~~l~   89 (105)
                      +++.+.|+++.
T Consensus       148 ~~l~~~i~~ll  158 (188)
T 2cvb_A          148 HDLEAAIEALL  158 (188)
T ss_dssp             CHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66777777654

>3ia1_A THIO-disulfide isomerase/thioredoxin; oxidoreductase, PSI-2, NYSGXRC, structu genomics, protein structure initiative; 1.76A {Thermus thermophilus}

Probab=98.78  E-value=1.3e-08  Score=66.47  Aligned_cols=70  Identities=20%  Similarity=0.153  Sum_probs=56.3

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEee---CcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLAD---FKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEV   81 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD---~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~ei   81 (105)
                      .+..++|+++        .+++||+++|   .+..+++.||+.      ..|++||||++|+|++.+.+..    +.+++
T Consensus        74 ~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~~----~~~~l  135 (154)
T 3ia1_A           74 REVVLEYMKT--------YPRFIPLLASDRDRPHEVAARFKVL------GQPWTFVVDREGKVVALFAGRA----GREAL  135 (154)
T ss_dssp             HHHHHHHHTT--------CTTEEECBCCSSCCHHHHHTTSSBC------SSCEEEEECTTSEEEEEEESBC----CHHHH
T ss_pred             HHHHHHHHHH--------cCCCcccccccccchHHHHHHhCCC------cccEEEEECCCCCEEEEEcCCC----CHHHH
Confidence            4456677755        2779999998   778999999987      3699999999999999998743    68888


Q ss_pred             HHHHHhhhhhh
Q psy13875         82 LRLVKAFQFVD   92 (105)
Q Consensus        82 l~~l~~l~~~~   92 (105)
                      .+.|+++....
T Consensus       136 ~~~l~~~~~~~  146 (154)
T 3ia1_A          136 LDALLLAGADL  146 (154)
T ss_dssp             HHHHHHTTCCC
T ss_pred             HHHHHhccCcc
Confidence            88888876433

>2l5o_A Putative thioredoxin; structural genomics, unknown function, PSI-2, protein struct initiative; NMR {Neisseria meningitidis serogroup B}

Probab=98.76  E-value=3.6e-08  Score=64.23  Aligned_cols=67  Identities=15%  Similarity=0.262  Sum_probs=55.3

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      .+..++|+++.        +++|+++.|.+..+++.||+.    +  .|++||||++|+|++.+.+.    .+.+++++.
T Consensus        74 ~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~i~----~--~P~~~lid~~G~i~~~~~g~----~~~~~l~~~  135 (153)
T 2l5o_A           74 IESVRQYVKDY--------GLPFTVMYDADKAVGQAFGTQ----V--YPTSVLIGKKGEILKTYVGE----PDFGKLYQE  135 (153)
T ss_dssp             HHHHHHHHHHT--------TCCSEEEECSSCHHHHHHTCC----S--SSEEEEECSSSCCCEEEESS----CCHHHHHHH
T ss_pred             HHHHHHHHHHc--------CCCceEEcCchHHHHHHcCCC----c--cCeEEEECCCCcEEEEEcCC----CCHHHHHHH
Confidence            35567787662        778999999999999999987    3  69999999999999998864    368888888


Q ss_pred             HHhhh
Q psy13875         85 VKAFQ   89 (105)
Q Consensus        85 l~~l~   89 (105)
                      |+++.
T Consensus       136 l~~ll  140 (153)
T 2l5o_A          136 IDTAW  140 (153)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>3lwa_A Secreted thiol-disulfide isomerase; thioredoxin, PSI, MCSG, structural genomics, midwest center for structural genomics; 1.75A {Corynebacterium glutamicum}

Probab=98.75  E-value=5.3e-08  Score=65.72  Aligned_cols=70  Identities=16%  Similarity=0.226  Sum_probs=55.8

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ++..++|+++.        +++||+++|.++.+++.||.+..   ...|++||||++|+|++.+.+..    +.+++.+.
T Consensus       111 ~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~~~~v---~~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~  175 (183)
T 3lwa_A          111 RDIAQDFVTDN--------GLDYPSIYDPPFMTAASLGGVPA---SVIPTTIVLDKQHRPAAVFLREV----TSKDVLDV  175 (183)
T ss_dssp             HHHHHHHHHHT--------TCCSCEEECTTCGGGGGTTTCCT---TCCSEEEEECTTSCEEEEECSCC----CHHHHHHH
T ss_pred             HHHHHHHHHHc--------CCCccEEECCcchHHHHhccCCC---CCCCeEEEECCCCcEEEEEcCCC----CHHHHHHH
Confidence            45678888762        78999999999999999985311   14799999999999999988643    67888888


Q ss_pred             HHhhh
Q psy13875         85 VKAFQ   89 (105)
Q Consensus        85 l~~l~   89 (105)
                      |+++.
T Consensus       176 l~~ll  180 (183)
T 3lwa_A          176 ALPLV  180 (183)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87754

>3fw2_A Thiol-disulfide oxidoreductase; structural genomics, APC61456.1, thiol-disulfide oxidoreduct TLPA-like family, PSI-2; 1.74A {Bacteroides thetaiotaomicron}

Probab=98.74  E-value=4e-08  Score=64.28  Aligned_cols=63  Identities=14%  Similarity=0.303  Sum_probs=50.2

Q ss_pred             HHHHHHHHhhhcCCCCCCCCCceEEeeC---cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHH
Q psy13875          6 EGDEVWLEDVKQGDGGLGDLKYPLLADF---KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVL   82 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l~fpllsD~---~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil   82 (105)
                      +..++|+++        .+++||+++|.   ++.+++.||+.      ..|++||||++|+|++.+.       +.+++.
T Consensus        82 ~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~-------~~~~l~  140 (150)
T 3fw2_A           82 QQWKDAIKR--------DTLDWEQVCDFGGLNSEVAKQYSIY------KIPANILLSSDGKILAKNL-------RGEELK  140 (150)
T ss_dssp             HHHHHHHHH--------TTCCSEEECCSCGGGCHHHHHTTCC------SSSEEEEECTTSBEEEESC-------CHHHHH
T ss_pred             HHHHHHHHH--------hCCCceEEEcCcccchHHHHHcCCC------ccCeEEEECCCCEEEEccC-------CHHHHH
Confidence            456677765        27899999999   67999999987      3699999999999999874       566677


Q ss_pred             HHHHhhh
Q psy13875         83 RLVKAFQ   89 (105)
Q Consensus        83 ~~l~~l~   89 (105)
                      +.|+++.
T Consensus       141 ~~l~~ll  147 (150)
T 3fw2_A          141 KKIENIV  147 (150)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776643

>2ggt_A SCO1 protein homolog, mitochondrial; copper chaperone, Cu-binding protein, mitochondrial assembly factor, redox, nickel, disuplhide, mitochondrion; 2.40A {Homo sapiens} SCOP: c.47.1.10 PDB: 2gqk_A 2gql_A 2gqm_A 2gt5_A 2gt6_A 2gvp_A 2hrf_A 2hrn_A 1wp0_A

Probab=98.73  E-value=4.1e-08  Score=64.59  Aligned_cols=73  Identities=12%  Similarity=0.128  Sum_probs=53.5

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEe---eCcchHHhhhCCcccc-----CC----ccceeEEEECCCCCEEEEEeccC
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLA---DFKKEIATSYGVLIES-----AG----IPLRGLFIIDTKGVLRQITVNDL   72 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fplls---D~~~~vak~ygv~~~~-----~G----~~~ratfiID~~G~V~~~~~~~~   72 (105)
                      ++..++|+++.        +++|++++   |..+.++++||+....     .+    ...+++||||++|+|++.+.+..
T Consensus        76 ~~~~~~~~~~~--------~~~~~~l~~~~d~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~~  147 (164)
T 2ggt_A           76 KEAIANYVKEF--------SPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQNK  147 (164)
T ss_dssp             HHHHHHHHHTT--------CSSCEEEECCHHHHHHHHHTTTCCEEEEEECTTSCEEEEECCEEEEECTTSCEEEEEETTC
T ss_pred             HHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHhcCeEEEecCCCCCCCeeEeccceEEEECCCCeEEEEeCCCC
Confidence            56788898762        67899994   6667899999986311     00    01238999999999999987643


Q ss_pred             CCCCCHHHHHHHHHhhh
Q psy13875         73 PVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        73 ~~~~~~~eil~~l~~l~   89 (105)
                          +.+++++.|+++.
T Consensus       148 ----~~~~l~~~l~~ll  160 (164)
T 2ggt_A          148 ----RKGEIAASIATHM  160 (164)
T ss_dssp             ----CHHHHHHHHHHHH
T ss_pred             ----CHHHHHHHHHHHH
Confidence                5788888887764

>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A

Probab=98.71  E-value=1.2e-07  Score=59.95  Aligned_cols=65  Identities=18%  Similarity=0.308  Sum_probs=52.2

Q ss_pred             hHHHHHHHHhhhcCCCCCCCC-CceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDL-KYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l-~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      ....++|.++.        ++ +||+++|.+..+++.||+.    +  .|++||||++|+|+ .+.+..    +.+++.+
T Consensus        68 ~~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~i~----~--~P~~~~id~~g~i~-~~~g~~----~~~~l~~  128 (136)
T 1zzo_A           68 VPAMQEFVNKY--------PVKTFTQLADTDGSVWANFGVT----Q--QPAYAFVDPHGNVD-VVRGRM----SQDELTR  128 (136)
T ss_dssp             HHHHHHHHHHT--------TCTTSEEEECTTCHHHHHTTCC----S--SSEEEEECTTCCEE-EEESCC----CHHHHHH
T ss_pred             HHHHHHHHHHc--------CCCceEEEEcCCcHHHHHcCCC----C--CceEEEECCCCCEE-EEecCC----CHHHHHH
Confidence            34567777652        66 8999999999999999986    3  69999999999999 777643    5788888


Q ss_pred             HHHhh
Q psy13875         84 LVKAF   88 (105)
Q Consensus        84 ~l~~l   88 (105)
                      .|+++
T Consensus       129 ~l~~~  133 (136)
T 1zzo_A          129 RVTAL  133 (136)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>2rli_A SCO2 protein homolog, mitochondrial; copper protein, thioredoxin fold, metal transport, structural genomics, spine2-complexes; NMR {Homo sapiens}

Probab=98.71  E-value=9.3e-08  Score=63.39  Aligned_cols=75  Identities=13%  Similarity=0.161  Sum_probs=55.5

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCc---chHHhhhCCccccC-----C----ccceeEEEECCCCCEEEEEecc
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFK---KEIATSYGVLIESA-----G----IPLRGLFIIDTKGVLRQITVND   71 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~---~~vak~ygv~~~~~-----G----~~~ratfiID~~G~V~~~~~~~   71 (105)
                      .++..++|+++.        +++|++|+|..   +.++++||+.....     +    ...|++||||++|+|++++.+.
T Consensus        78 ~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~  149 (171)
T 2rli_A           78 DVEAMARYVQDF--------HPRLLGLTGSTKQVAQASHSYRVYYNAGPKDEDQDYIVDHSIAIYLLNPDGLFTDYYGRS  149 (171)
T ss_dssp             CHHHHHHHHHTT--------CTTCCEEECCHHHHHHHHHHSCCCCEECCCCSSCCCCEECCCEEEEECTTSCEEEEEESS
T ss_pred             CHHHHHHHHHHc--------CCCeEEEeCCHHHHHHHHHHhCeEEEecCCCCCCCeEEeccceEEEECCCCeEEEEECCC
Confidence            356788898762        67899998753   58999999873210     0    1245999999999999998764


Q ss_pred             CCCCCCHHHHHHHHHhhhh
Q psy13875         72 LPVGRSVEEVLRLVKAFQF   90 (105)
Q Consensus        72 ~~~~~~~~eil~~l~~l~~   90 (105)
                      .    +.+++++.|+++..
T Consensus       150 ~----~~~~l~~~l~~ll~  164 (171)
T 2rli_A          150 R----SAEQISDSVRRHMA  164 (171)
T ss_dssp             C----CHHHHHHHHHHHHH
T ss_pred             C----CHHHHHHHHHHHHH
Confidence            3    67888888887654

>2k6v_A Putative cytochrome C oxidase assembly protein; thioredoxin fold, electron transfer protein, metal binding protein, electron transport; NMR {Thermus thermophilus}

Probab=98.70  E-value=1.3e-08  Score=67.50  Aligned_cols=74  Identities=16%  Similarity=0.229  Sum_probs=57.4

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCc---chHHhhhCCccccC--------C-ccceeEEEECCCCCEEEEEecc
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFK---KEIATSYGVLIESA--------G-IPLRGLFIIDTKGVLRQITVND   71 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~---~~vak~ygv~~~~~--------G-~~~ratfiID~~G~V~~~~~~~   71 (105)
                      .++..++|+++.        +++||+++|.+   +.++++||+.....        + ...|++|||| +|+|++.+.+.
T Consensus        86 ~~~~~~~~~~~~--------~~~~~~l~d~~~~~~~~~~~~gv~~~~~~~~~~~~~~i~~~P~~~lid-~G~i~~~~~g~  156 (172)
T 2k6v_A           86 PPEVADRYAKAF--------HPSFLGLSGSPEAVREAAQTFGVFYQKSQYRGPGEYLVDHTATTFVVK-EGRLVLLYSPD  156 (172)
T ss_dssp             CHHHHHHHHHHH--------CTTEEEECCCHHHHHHHHHHHTCCEEEEEEEETTEEEEEECCCEEEEE-TTEEEEEECHH
T ss_pred             CHHHHHHHHHHh--------CCCcEEEeCCHHHHHHHHHhcCeEEEeccCCCCCCceEecCCEEEEEE-CCEEEEEECCC
Confidence            356788999873        67999999998   78999999864311        1 1479999999 99999999864


Q ss_pred             CCCCCCHHHHHHHHHhh
Q psy13875         72 LPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        72 ~~~~~~~~eil~~l~~l   88 (105)
                      .  ..+.+++++.|+++
T Consensus       157 ~--~~~~~~l~~~l~~l  171 (172)
T 2k6v_A          157 K--AEATDRVVADLQAL  171 (172)
T ss_dssp             H--HTCHHHHHHHHHHC
T ss_pred             C--CCCHHHHHHHHHHh
Confidence            3  23688888888765

>2b1k_A Thiol:disulfide interchange protein DSBE; C-terminal thioredoxin-like domain, N-terminal beta-sheet, fingerprint rigion, oxidoreductase; 1.90A {Escherichia coli} PDB: 3k8n_A 2g0f_A 1z5y_E 2b1l_A

Probab=98.69  E-value=8.5e-08  Score=63.66  Aligned_cols=66  Identities=24%  Similarity=0.379  Sum_probs=51.8

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCce-EEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYP-LLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fp-llsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      ++..++|.++.        +++|| ++.|.++.+++.||+.    +  .|++||||++|+|++.+.+..    +.+++.+
T Consensus        92 ~~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~v~----~--~P~~~lid~~G~i~~~~~g~~----~~~~l~~  153 (168)
T 2b1k_A           92 RQKAISWLKEL--------GNPYALSLFDGDGMLGLDLGVY----G--APETFLIDGNGIIRYRHAGDL----NPRVWEE  153 (168)
T ss_dssp             HHHHHHHHHHH--------CCCCSEEEEETTCHHHHHHTCC----S--SSEEEEECTTSBEEEEEESCC----CHHHHHH
T ss_pred             hHHHHHHHHHc--------CCCCceeeECcchHHHHHcCcc----c--cCEEEEECCCCeEEEEEeCCC----CHHHHHH
Confidence            35678888763        67888 6799999999999987    3  699999999999999998744    4566655


Q ss_pred             HHHhh
Q psy13875         84 LVKAF   88 (105)
Q Consensus        84 ~l~~l   88 (105)
                      .|+.+
T Consensus       154 ~l~~~  158 (168)
T 2b1k_A          154 EIKPL  158 (168)
T ss_dssp             TTHHH
T ss_pred             HHHHH
Confidence            55543

>1kng_A Thiol:disulfide interchange protein CYCY; thioredoxin fold, cytochrome C maturation, atomic resolution oxidoreductase; 1.14A {Bradyrhizobium japonicum} SCOP: c.47.1.10

Probab=98.69  E-value=1.2e-07  Score=61.71  Aligned_cols=66  Identities=12%  Similarity=0.255  Sum_probs=52.7

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCce-EEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYP-LLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fp-llsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      .+..++|+++.        +++|| ++.|.+..+++.||+.    +  .|++||||++|+|++.+.+..    +.+++.+
T Consensus        84 ~~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~v~----~--~P~~~~id~~G~i~~~~~g~~----~~~~l~~  145 (156)
T 1kng_A           84 ADNARRFLGRY--------GNPFGRVGVDANGRASIEWGVY----G--VPETFVVGREGTIVYKLVGPI----TPDNLRS  145 (156)
T ss_dssp             HHHHHHHHHHH--------CCCCSEEEEETTSHHHHHTTCC----S--SCEEEEECTTSBEEEEEESCC----CHHHHHH
T ss_pred             HHHHHHHHHHc--------CCCCceeeeCchhHHHHhcCcC----c--cCeEEEEcCCCCEEEEEeCCC----CHHHHHH
Confidence            34567787663        67999 8899999999999987    3  699999999999999988643    5666766


Q ss_pred             HHHhh
Q psy13875         84 LVKAF   88 (105)
Q Consensus        84 ~l~~l   88 (105)
                      .|+++
T Consensus       146 ~l~~~  150 (156)
T 1kng_A          146 VLLPQ  150 (156)
T ss_dssp             THHHH
T ss_pred             HHHHH
Confidence            66654

>4h86_A Peroxiredoxin type-2; oxidoreductase; 2.00A {Saccharomyces cerevisiae} PDB: 4dsq_A 4dsr_A 4dss_A

Probab=98.68  E-value=4e-08  Score=69.67  Aligned_cols=75  Identities=17%  Similarity=0.236  Sum_probs=54.9

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCC---ccceeEEEECCCCCEEEEEeccCC---CC-CC
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAG---IPLRGLFIIDTKGVLRQITVNDLP---VG-RS   77 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G---~~~ratfiID~~G~V~~~~~~~~~---~~-~~   77 (105)
                      ++++++|.+....    .....+++|+|.+++++++||+.....+   .+.|.++||| ||+|.+.++.+.+   .. ..
T Consensus       117 ~FVm~AW~k~~~~----~~~~~i~~laD~~~eftkalGl~~~~~~gg~RS~Rya~IVd-DGvV~~~~vE~~pg~~~~vS~  191 (199)
T 4h86_A          117 PFANQAWAKSLGV----KDTTHIKFASDPGCAFTKSIGFELAVGDGVYWSGRWAMVVE-NGIVTYAAKETNPGTDVTVSS  191 (199)
T ss_dssp             HHHHHHHHHHTTC----CCCSSEEEEECGGGHHHHHTTCEEEEETTEEEECSEEEEEE-TTEEEEEEECSSTTTCCSTTS
T ss_pred             HHHHHHHHHHhcc----cccccccccCCcchHHHHhcCceeecCCCcceeeEEEEEEE-CCEEEEEEEeCCCCCCCcccC
Confidence            6899999987421    1245799999999999999998654322   2679999998 9999999985432   11 24


Q ss_pred             HHHHHHH
Q psy13875         78 VEEVLRL   84 (105)
Q Consensus        78 ~~eil~~   84 (105)
                      .+.+|+.
T Consensus       192 ae~vL~~  198 (199)
T 4h86_A          192 VESVLAH  198 (199)
T ss_dssp             HHHHHTT
T ss_pred             HHHHHhc
Confidence            6666543

>3ewl_A Uncharacterized conserved protein BF1870; alpha-beta fold, structural genomics, PSI-2, protein structu initiative; 2.00A {Bacteroides fragilis}

Probab=98.64  E-value=1.3e-07  Score=60.91  Aligned_cols=53  Identities=11%  Similarity=0.169  Sum_probs=43.2

Q ss_pred             CCCceEEeeCcchHHh--hhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLLADFKKEIAT--SYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpllsD~~~~vak--~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      +++||++.|.++.++.  .||+.      ..|++||||++|+|++.       ..+.+++.+.|++++
T Consensus        86 ~~~~~~~~d~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~-------~~~~~~l~~~l~~~~  140 (142)
T 3ewl_A           86 PQGWIVGWNKAGDIRTRQLYDIR------ATPTIYLLDGRKRVILK-------DTSMEQLIDYLATQA  140 (142)
T ss_dssp             CTTCEEEECTTCHHHHTTCSCCC------SSSEEEEECTTCBEEEC-------SCCHHHHHHHHHC--
T ss_pred             CCCcceeeCCccchhhHHHcCCC------CCCeEEEECCCCCEEec-------CCCHHHHHHHHHHHc
Confidence            7899999999999977  99987      36999999999999872       236788888887754

>2h30_A Thioredoxin, peptide methionine sulfoxide reductase MSRA/MSRB; reduced, thiol-disulfide exchange, oxidoreductase; 1.60A {Neisseria gonorrhoeae} PDB: 2jzr_A 2jzs_A 2k9f_A 2fy6_A

Probab=98.64  E-value=1.5e-07  Score=61.93  Aligned_cols=56  Identities=16%  Similarity=0.283  Sum_probs=47.7

Q ss_pred             CCC-ceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLK-YPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~-fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      +++ |+++.|.+..+++.||+.    +  .|++||||++|+|++.+.+..    +.+++.+.|+++.
T Consensus        99 ~~~~~~~~~d~~~~~~~~~~v~----~--~P~~~lid~~G~i~~~~~g~~----~~~~l~~~i~~~~  155 (164)
T 2h30_A           99 NYPKLPVVTDNGGTIAQNLNIS----V--YPSWALIGKDGDVQRIVKGSI----NEAQALALIRNPN  155 (164)
T ss_dssp             CCTTSCEEECTTCHHHHHTTCC----S--SSEEEEECTTSCEEEEEESCC----CHHHHHHHHHCTT
T ss_pred             CCCcceEEEcCchHHHHHcCCC----c--cceEEEECCCCcEEEEEcCCC----CHHHHHHHHHHHH
Confidence            566 899999999999999987    3  699999999999999988643    6788888887764

>3hcz_A Possible thiol-disulfide isomerase; APC61559.2, cytophaga hutchinsoni structural genomics, PSI-2, protein structure initiative; 1.88A {Cytophaga hutchinsonii}

Probab=98.63  E-value=9.6e-08  Score=61.44  Aligned_cols=65  Identities=12%  Similarity=0.217  Sum_probs=51.4

Q ss_pred             HHHHHHHHhhhcCCCCCCCCC-ceEEeeCcch--HHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHH
Q psy13875          6 EGDEVWLEDVKQGDGGLGDLK-YPLLADFKKE--IATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVL   82 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l~-fpllsD~~~~--vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil   82 (105)
                      +..++|.++.        +++ |++++|.++.  +++.||+.      ..|++||||++|+|++.+.+.    .+.++++
T Consensus        77 ~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~i~------~~P~~~lid~~G~i~~~~~g~----~~~~~~l  138 (148)
T 3hcz_A           77 EEWLKFIRSK--------KIGGWLNVRDSKNHTDFKITYDIY------ATPVLYVLDKNKVIIAKRIGY----ENLDDFL  138 (148)
T ss_dssp             HHHHHHHHHH--------TCTTSEEEECTTCCCCHHHHHCCC------SSCEEEEECTTCBEEEESCCG----GGHHHHH
T ss_pred             HHHHHHHHHc--------CCCCceEEeccccchhHHHhcCcC------CCCEEEEECCCCcEEEecCCH----HHHHHHH
Confidence            4567777663        566 9999999988  99999987      369999999999999988653    3677777


Q ss_pred             HHHHhh
Q psy13875         83 RLVKAF   88 (105)
Q Consensus        83 ~~l~~l   88 (105)
                      +.+.++
T Consensus       139 ~~l~~~  144 (148)
T 3hcz_A          139 VQYEKS  144 (148)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766553

>2lrn_A Thiol:disulfide interchange protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, oxidoreductase; NMR {Bacteroides SP}

Probab=98.62  E-value=9.5e-08  Score=62.56  Aligned_cols=53  Identities=13%  Similarity=0.270  Sum_probs=42.4

Q ss_pred             CCCceEEeeC---cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLLADF---KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpllsD~---~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      +++||+++|.   +..+++.||+.      ..|++||||++|+|++.+..       .+++.+.|+++.
T Consensus        85 ~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~-------~~~l~~~l~~l~  140 (152)
T 2lrn_A           85 KSYWNQVLLQKDDVKDVLESYCIV------GFPHIILVDPEGKIVAKELR-------GDDLYNTVEKFV  140 (152)
T ss_dssp             TCCSEEEEECHHHHHHHHHHTTCC------SSCEEEEECTTSEEEEECCC-------TTHHHHHHHHHH
T ss_pred             CCCCeEEecccchhHHHHHHhCCC------cCCeEEEECCCCeEEEeeCC-------HHHHHHHHHHHH
Confidence            7799999999   78999999987      36999999999999998742       235555565543

>3ha9_A Uncharacterized thioredoxin-like protein; PSI, MCSG, structural G midwest center for structural genomics, protein structure initiative; 1.70A {Aeropyrum pernix}

Probab=98.55  E-value=3.5e-07  Score=60.43  Aligned_cols=66  Identities=14%  Similarity=0.213  Sum_probs=52.1

Q ss_pred             chHHHHHHHHhhhcCCCCCCCC-CceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHH
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDL-KYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVL   82 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l-~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil   82 (105)
                      ..+..++|.++.        ++ +||+++| ++++++.||+.    +  .|++||||++|+|++  .+..   .+.+++.
T Consensus        97 ~~~~~~~~~~~~--------~~~~~~~~~d-~~~~~~~~~v~----~--~P~~~lid~~G~i~~--~g~~---~~~~~l~  156 (165)
T 3ha9_A           97 TPEMFRKFIANY--------GDPSWIMVMD-DGSLVEKFNVR----S--IDYIVIMDKSSNVLY--AGTT---PSLGELE  156 (165)
T ss_dssp             CHHHHHHHHHHH--------SCTTSEEEEC-CSHHHHHTTCC----S--SSEEEEEETTCCEEE--EEES---CCHHHHH
T ss_pred             CHHHHHHHHHHc--------CCCCeeEEeC-hHHHHHHhCCC----C--ceEEEEEcCCCcEEE--eCCC---CCHHHHH
Confidence            345677888763        67 9999999 99999999987    3  699999999999999  4433   1577888


Q ss_pred             HHHHhhh
Q psy13875         83 RLVKAFQ   89 (105)
Q Consensus        83 ~~l~~l~   89 (105)
                      +.|+++.
T Consensus       157 ~~l~~l~  163 (165)
T 3ha9_A          157 SVIKSVQ  163 (165)
T ss_dssp             HHHHHC-
T ss_pred             HHHHHHh
Confidence            8887754

>3fkf_A Thiol-disulfide oxidoreductase; structural genomics, PSI-2, structure initiative, midwest center for structural genomic oxidoreductase; 2.20A {Bacteroides fragilis}

Probab=98.54  E-value=3e-07  Score=59.09  Aligned_cols=62  Identities=19%  Similarity=0.307  Sum_probs=49.4

Q ss_pred             HHHHHHHhhhcCCCCCCCCCceEEeeC---cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          7 GDEVWLEDVKQGDGGLGDLKYPLLADF---KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         7 sh~~w~~~~~~~~~~~~~l~fpllsD~---~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      ..++|+++        .+++||+++|.   +..+++.||+.      ..|++||||++|+|++.+.       +.+++.+
T Consensus        81 ~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~-------~~~~l~~  139 (148)
T 3fkf_A           81 AWETAIKK--------DTLSWDQVCDFTGLSSETAKQYAIL------TLPTNILLSPTGKILARDI-------QGEALTG  139 (148)
T ss_dssp             HHHHHHHH--------TTCCSEEECCSCGGGCHHHHHTTCC------SSSEEEEECTTSBEEEESC-------CHHHHHH
T ss_pred             HHHHHHHH--------cCCCceEEEccCCcchHHHHhcCCC------CcCEEEEECCCCeEEEecC-------CHHHHHH
Confidence            45566655        27899999999   77999999987      3699999999999998764       5777777


Q ss_pred             HHHhhh
Q psy13875         84 LVKAFQ   89 (105)
Q Consensus        84 ~l~~l~   89 (105)
                      .|+++.
T Consensus       140 ~l~~ll  145 (148)
T 3fkf_A          140 KLKELL  145 (148)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            776653

>3or5_A Thiol:disulfide interchange protein, thioredoxin protein; PSI-II, structural genomics, protein structure initiative; 1.66A {Chlorobaculum tepidum} SCOP: c.47.1.0

Probab=98.54  E-value=4.8e-07  Score=59.35  Aligned_cols=72  Identities=18%  Similarity=0.282  Sum_probs=53.0

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ....++|+++.        +++||++.|.. ++++.|+......-...|++||||++|+|++.+.+..    +.+++.+.
T Consensus        79 ~~~~~~~~~~~--------~~~~~~~~~~~-~~~~~~~~~~~~~i~~~P~~~lid~~G~i~~~~~g~~----~~~~l~~~  145 (165)
T 3or5_A           79 LPNVKNYMKTQ--------GIIYPVMMATP-ELIRAFNGYIDGGITGIPTSFVIDASGNVSGVIVGPR----SKADFDRI  145 (165)
T ss_dssp             HHHHHHHHHHH--------TCCSCEEECCH-HHHHHHHTTSTTCSCSSSEEEEECTTSBEEEEECSCC----CHHHHHHH
T ss_pred             HHHHHHHHHHc--------CCCCceEecCH-HHHHHHhhhhccCCCCCCeEEEECCCCcEEEEEcCCC----CHHHHHHH
Confidence            34567777663        78999999976 8999995443211124799999999999999887643    57777777


Q ss_pred             HHhhh
Q psy13875         85 VKAFQ   89 (105)
Q Consensus        85 l~~l~   89 (105)
                      |+++-
T Consensus       146 l~~~l  150 (165)
T 3or5_A          146 VKMAL  150 (165)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77754

>4fo5_A Thioredoxin-like protein; AHPC/TSA family protein, structural genomics, joint center F structural genomics, JCSG; 2.02A {Parabacteroides distasonis}

Probab=98.52  E-value=2.9e-07  Score=59.63  Aligned_cols=61  Identities=18%  Similarity=0.154  Sum_probs=46.2

Q ss_pred             HHHHHHHHhhhcCCCCCCCCCc-eEEeeCc---chHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHH
Q psy13875          6 EGDEVWLEDVKQGDGGLGDLKY-PLLADFK---KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEV   81 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l~f-pllsD~~---~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~ei   81 (105)
                      +..++|+++.        +++| ++++|.+   +.+++.||+.      ..|++||||++|+|++...       ..+++
T Consensus        78 ~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~-------~~~~l  136 (143)
T 4fo5_A           78 SIFTETVKID--------KLDLSTQFHEGLGKESELYKKYDLR------KGFKNFLINDEGVIIAANV-------TPEKL  136 (143)
T ss_dssp             HHHHHHHHHH--------TCCGGGEEECTTGGGSHHHHHTTGG------GCCCEEEECTTSBEEEESC-------CHHHH
T ss_pred             HHHHHHHHHh--------CCCCceeeecccccchHHHHHcCCC------CCCcEEEECCCCEEEEccC-------CHHHH
Confidence            4556666552        7899 8899984   6899999987      4699999999999998764       35566


Q ss_pred             HHHHHh
Q psy13875         82 LRLVKA   87 (105)
Q Consensus        82 l~~l~~   87 (105)
                      .+.|++
T Consensus       137 ~~~l~~  142 (143)
T 4fo5_A          137 TEILKA  142 (143)
T ss_dssp             HHHHTC
T ss_pred             HHHHHh
Confidence            655554

>3me7_A Putative uncharacterized protein; electron transfer protein, electron transport, structural GE PSI-2, protein structure initiative; 1.50A {Aquifex aeolicus} PDB: 3me8_A

Probab=98.45  E-value=9.4e-07  Score=59.58  Aligned_cols=80  Identities=5%  Similarity=0.015  Sum_probs=54.8

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEE--ee--CcchHHhhhCCcccc--CC-ccceeEEEECCCCCEEEEEeccCCCCC
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLL--AD--FKKEIATSYGVLIES--AG-IPLRGLFIIDTKGVLRQITVNDLPVGR   76 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpll--sD--~~~~vak~ygv~~~~--~G-~~~ratfiID~~G~V~~~~~~~~~~~~   76 (105)
                      .++..++|+++.     ++....++++  .|  ...+++++||+....  .+ ...|++||||++|+|++++.+.   ..
T Consensus        77 ~~~~~~~~~~~~-----~~~~~~w~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~lID~~G~i~~~~~g~---~~  148 (170)
T 3me7_A           77 TLEDIKRFQKEY-----GIDGKGWKVVKAKTSEDLFKLLDAIDFRFMTAGNDFIHPNVVVVLSPELQIKDYIYGV---NY  148 (170)
T ss_dssp             CHHHHHHHHHHT-----TCCSSSEEEEEESSHHHHHHHHHHTTCCCEEETTEEECCCEEEEECTTSBEEEEEESS---SC
T ss_pred             CHHHHHHHHHHc-----CCCCCCeEEEeCCCHHHHHHHHHHCCeEEecCCCccccCceEEEECCCCeEEEEEeCC---CC
Confidence            467889999873     2212233343  33  347899999875321  11 2468999999999999998764   34


Q ss_pred             CHHHHHHHHHhhhhh
Q psy13875         77 SVEEVLRLVKAFQFV   91 (105)
Q Consensus        77 ~~~eil~~l~~l~~~   91 (105)
                      +.+++++.|+++...
T Consensus       149 ~~~~i~~~l~~~~~~  163 (170)
T 3me7_A          149 NYLEFVNALRLARGE  163 (170)
T ss_dssp             CHHHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHhhcc
Confidence            699999999887653

>2ls5_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, NEW structural genomics research consortium; NMR {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=2.4e-08  Score=65.83  Aligned_cols=58  Identities=19%  Similarity=0.309  Sum_probs=43.1

Q ss_pred             CCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        24 ~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      +++||+++|.++.++++||+...  |  .|++||||++|+|++.+.+. . ..+.+++++.|.+
T Consensus        91 ~~~~~~~~d~~~~~~~~~~~~~~--~--~P~~~lid~~G~i~~~~~g~-~-~~~l~~~l~~l~~  148 (159)
T 2ls5_A           91 GVTYPLGLDPGADIFAKYALRDA--G--ITRNVLIDREGKIVKLTRLY-N-EEEFASLVQQINE  148 (159)
Confidence            77999999999999999996421  3  69999999999999988752 1 2234444444433

>2b7k_A SCO1 protein; metallochaperone, cytochrome C oxidase, metal binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: c.47.1.10 PDB: 2b7j_A

Probab=98.43  E-value=3e-07  Score=63.53  Aligned_cols=79  Identities=15%  Similarity=0.165  Sum_probs=53.9

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEee---CcchHHhhhCCcccc-----CC-----ccceeEEEECCCCCEEEEEec
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLAD---FKKEIATSYGVLIES-----AG-----IPLRGLFIIDTKGVLRQITVN   70 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD---~~~~vak~ygv~~~~-----~G-----~~~ratfiID~~G~V~~~~~~   70 (105)
                      .++.+++|+++.        +++|++|++   ..+.++++||+....     .|     ...|++||||++|+|++.+.+
T Consensus        92 ~~~~~~~~~~~~--------~~~~~~l~~~~d~~~~~~~~~gv~~~~p~~~~~~~~~~~~~~~~~~liD~~G~i~~~~~g  163 (200)
T 2b7k_A           92 SPAVLKEYLSDF--------HPSILGLTGTFDEVKNACKKYRVYFSTPPNVKPGQDYLVDHSIFFYLMDPEGQFVDALGR  163 (200)
T ss_dssp             CHHHHHHHHTTS--------CTTCEEEECCHHHHHHHHHHTTC--------------CTTTCCCEEEECTTSCEEEEECT
T ss_pred             CHHHHHHHHHHc--------CCCceEEeCCHHHHHHHHHHcCcEEeeccccCCCCCceeeecceEEEECCCCcEEEEeCC
Confidence            456788888652        578888874   357899999987210     01     125799999999999999876


Q ss_pred             cCCCCCCHHHHHHHHHhhhh
Q psy13875         71 DLPVGRSVEEVLRLVKAFQF   90 (105)
Q Consensus        71 ~~~~~~~~~eil~~l~~l~~   90 (105)
                      ..+.....+++.+.|+++..
T Consensus       164 ~~~~~~~~~~i~~~l~~l~~  183 (200)
T 2b7k_A          164 NYDEKTGVDKIVEHVKSYVP  183 (200)
T ss_dssp             TCCTTHHHHHHHHHHHHCCC
T ss_pred             CCCHHHHHHHHHHHHHHhhh
Confidence            55444445666677776654

>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}

Probab=98.43  E-value=5.1e-07  Score=58.57  Aligned_cols=68  Identities=13%  Similarity=0.171  Sum_probs=50.8

Q ss_pred             HHHHHHHhhhcCCCCCCCCC-ceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875          7 GDEVWLEDVKQGDGGLGDLK-YPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV   85 (105)
Q Consensus         7 sh~~w~~~~~~~~~~~~~l~-fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l   85 (105)
                      ..++|+++.        +++ +++++|.++.+++.||+.    +  .|++||||++|+|++.+.+.    .+.+++.+.|
T Consensus        77 ~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~v~----~--~P~~~lid~~G~i~~~~~g~----~~~~~l~~~l  138 (152)
T 2lja_A           77 AWENMVTKD--------QLKGIQLHMGTDRTFMDAYLIN----G--IPRFILLDRDGKIISANMTR----PSDPKTAEKF  138 (152)
T ss_dssp             HHHHHHHHH--------TCCSEEEECSSCTHHHHHTTCC----S--SCCEEEECTTSCEEESSCCC----TTCHHHHHHH
T ss_pred             HHHHHHHhc--------CCCCceeecCcchhHHHHcCcC----C--CCEEEEECCCCeEEEccCCC----CCHHHHHHHH
Confidence            456666552        344 578889999999999987    3  69999999999999876543    3567788888


Q ss_pred             Hhhhhhh
Q psy13875         86 KAFQFVD   92 (105)
Q Consensus        86 ~~l~~~~   92 (105)
                      +.+....
T Consensus       139 ~~~~~~~  145 (152)
T 2lja_A          139 NELLGLE  145 (152)
T ss_dssp             HHHHTCC
T ss_pred             HHHhccc
Confidence            7765433

>3eur_A Uncharacterized protein; PSI2,MCSG, conserved protein, structural genomics, protein S initiative, midwest center for structural genomics; HET: MSE; 1.30A {Bacteroides fragilis}

Probab=98.38  E-value=1.3e-06  Score=56.34  Aligned_cols=50  Identities=10%  Similarity=0.133  Sum_probs=40.8

Q ss_pred             CCCceEEeeCcch--HHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875         24 DLKYPLLADFKKE--IATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK   86 (105)
Q Consensus        24 ~l~fpllsD~~~~--vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~   86 (105)
                      +++|+.+.|.++.  +++.||+.      ..|++||||++|+|++...+       .+++.+.|+
T Consensus        90 ~~~~~~~~d~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~-------~~~l~~~l~  141 (142)
T 3eur_A           90 AKEWTNGYDKELVIKNKNLYDLR------AIPTLYLLDKNKTVLLKDAT-------LQKVEQYLA  141 (142)
T ss_dssp             CTTSEEEECTTCHHHHTTCSCCT------TCSEEEEECTTCBEEEEEEC-------HHHHHHHHH
T ss_pred             ccccccccCccchhhhhhhcCCC------cCCeEEEECCCCcEEecCCC-------HHHHHHHHh
Confidence            6789999999875  78999987      36999999999999998763       566666654

>2lrt_A Uncharacterized protein; structural genomics, thioredoxin-like, NEW YORK structural G research consortium, nysgrc, PSI-biology; NMR {Bacteroides vulgatus}

Probab=98.37  E-value=6.4e-07  Score=59.01  Aligned_cols=53  Identities=17%  Similarity=0.311  Sum_probs=43.0

Q ss_pred             CCCceEEeeCcch---HHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875         24 DLKYPLLADFKKE---IATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK   86 (105)
Q Consensus        24 ~l~fpllsD~~~~---vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~   86 (105)
                      +++||+++|.++.   +++.||+.      ..|++||||++|+|++.+.+.    .+.++.+..+.
T Consensus        89 ~~~~~~~~d~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~g~----~~~e~~~~~~~  144 (152)
T 2lrt_A           89 NLPWVCVRDANGAYSSYISLYNVT------NLPSVFLVNRNNELSARGENI----KDLDEAIKKLL  144 (152)
T ss_dssp             TCSSEEEECSSGGGCHHHHHHTCC------SCSEEEEEETTTEEEEETTTC----SCHHHHHHHHH
T ss_pred             CCCceEEECCCCcchHHHHHcCcc------cCceEEEECCCCeEEEecCCH----HHHHHHHHHHH
Confidence            5789999999987   99999987      369999999999999988753    35666655443

>2vup_A Glutathione peroxidase-like protein; oxidoreductase, trypanothione, dithiol-dependant peroxidase; 2.10A {Trypanosoma brucei}

Probab=98.35  E-value=1.2e-06  Score=59.82  Aligned_cols=68  Identities=21%  Similarity=0.324  Sum_probs=49.3

Q ss_pred             chHHHHHHH-HhhhcCCCCCCCCCceEEe--eCcchHHh-h--------hCCccccCCccce------eEEEECCCCCEE
Q psy13875          4 VDEGDEVWL-EDVKQGDGGLGDLKYPLLA--DFKKEIAT-S--------YGVLIESAGIPLR------GLFIIDTKGVLR   65 (105)
Q Consensus         4 ~~~sh~~w~-~~~~~~~~~~~~l~fplls--D~~~~vak-~--------ygv~~~~~G~~~r------atfiID~~G~V~   65 (105)
                      .++..++|+ ++.        +++||+++  |.++.+++ .        ||+.    |  .|      ++||||++|+|+
T Consensus        99 ~~~~~~~~~~~~~--------~~~~p~l~~~D~~~~~~~~~~~~l~~~~~~v~----~--~P~i~~~~~~~lid~~G~i~  164 (190)
T 2vup_A           99 NEEEIKEFVCTKF--------KAEFPIMAKINVNGENAHPLYEYMKKTKPGIL----K--TKAIKWNFTSFLIDRDGVPV  164 (190)
T ss_dssp             CHHHHHHHHHHHH--------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCGG----G--CCSCCSTTCEEEECTTSCEE
T ss_pred             CHHHHHHHHHHhc--------CCCeEEEeecccCcccccHHHHHHHhhcCCcC----C--CccccccceEEEECCCCcEE
Confidence            356778888 663        77999997  67776654 2        3544    3  35      999999999999


Q ss_pred             EEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         66 QITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        66 ~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      +.+.+..    +.+++.+.|+++.
T Consensus       165 ~~~~g~~----~~~~l~~~i~~ll  184 (190)
T 2vup_A          165 ERFSPGA----SVKDIEKKLIPLL  184 (190)
T ss_dssp             EEECTTC----CHHHHHHHHHHHH
T ss_pred             EEECCCC----CHHHHHHHHHHHH
Confidence            9987643    4677777777654

>2p5q_A Glutathione peroxidase 5; thioredoxin fold, oxidoreductase; 2.00A {Populus trichocarpa x populusdeltoides} PDB: 2p5r_A

Probab=98.34  E-value=6.5e-07  Score=59.07  Aligned_cols=69  Identities=17%  Similarity=0.289  Sum_probs=47.3

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEE--eeCcchHHh-hh--------CCccccCCccce---eEEEECCCCCEEEEEec
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLL--ADFKKEIAT-SY--------GVLIESAGIPLR---GLFIIDTKGVLRQITVN   70 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpll--sD~~~~vak-~y--------gv~~~~~G~~~r---atfiID~~G~V~~~~~~   70 (105)
                      ++..++|+++.       .+++||++  .|.++.+++ .|        |+.    +...|   ++||||++|+|++.+.+
T Consensus        84 ~~~~~~~~~~~-------~~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~----~~~~p~~~~~~lid~~G~i~~~~~g  152 (170)
T 2p5q_A           84 NDQITDFVCTR-------FKSEFPIFDKIDVNGENASPLYRFLKLGKWGIF----GDDIQWNFAKFLVNKDGQVVDRYYP  152 (170)
T ss_dssp             HHHHHHHHHHH-------TCCCSCBBCCCBSSSTTBCHHHHHHHTHHHHTT----CSCCCSTTCEEEECTTSCEEEEECT
T ss_pred             HHHHHHHHHHh-------cCCCceeEeeeccCCCchHHHHHHHHhcCCCcc----CCcccccccEEEECCCCCEEEeeCC
Confidence            45678888721       27799999  688877653 33        542    12356   99999999999999986


Q ss_pred             cCCCCCCHHHHHHHHHhh
Q psy13875         71 DLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        71 ~~~~~~~~~eil~~l~~l   88 (105)
                      ..    +.+++.+.|+++
T Consensus       153 ~~----~~~~l~~~i~~l  166 (170)
T 2p5q_A          153 TT----SPLSLERDIKQL  166 (170)
T ss_dssp             TS----CGGGGHHHHHHH
T ss_pred             CC----CHHHHHHHHHHH
Confidence            43    345566666654

>2obi_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase (GPX4); human GPX4, selenoprotein, thioredoxin-fold, anti-oxidatve defense system; 1.55A {Homo sapiens}

Probab=98.32  E-value=5.8e-07  Score=60.83  Aligned_cols=72  Identities=11%  Similarity=0.052  Sum_probs=47.8

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEe--eCcchHHh-hhCCcccc------CC---ccceeEEEECCCCCEEEEEeccC
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLA--DFKKEIAT-SYGVLIES------AG---IPLRGLFIIDTKGVLRQITVNDL   72 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fplls--D~~~~vak-~ygv~~~~------~G---~~~ratfiID~~G~V~~~~~~~~   72 (105)
                      ++..++|+++        .+++||+++  |.++..+. .|+.+...      .+   ...|++||||++|+|++.+.+..
T Consensus        99 ~~~~~~~~~~--------~~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~  170 (183)
T 2obi_A           99 NEEIKEFAAG--------YNVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPME  170 (183)
T ss_dssp             HHHHHHHHHT--------TTCCSEEBCCCCCSSTTSCHHHHHHHTSTTTCCSSSSSCCSTTCEEEECTTSCEEEEECTTS
T ss_pred             HHHHHHHHHH--------cCCCceEEeeeccCCcchhHHHHHhhccCCCCCcccccccccceEEEECCCCCEEEEeCCCC
Confidence            4678888865        278999998  77777653 45221100      01   12589999999999999987643


Q ss_pred             CCCCCHHHHHHHHHhh
Q psy13875         73 PVGRSVEEVLRLVKAF   88 (105)
Q Consensus        73 ~~~~~~~eil~~l~~l   88 (105)
                          +.+++.+.|+++
T Consensus       171 ----~~~~l~~~i~~l  182 (183)
T 2obi_A          171 ----EPLVIEKDLPHY  182 (183)
T ss_dssp             ----CTHHHHTTSGGG
T ss_pred             ----CHHHHHHHHHHh
Confidence                446666666543

>2p31_A CL683, glutathione peroxidase 7; thioredoxin fold, NPGPX, phospholipid hydroperoxidase, struc genomics, structural genomics consortium, SGC; 2.00A {Homo sapiens}

Probab=98.28  E-value=8.4e-07  Score=60.11  Aligned_cols=66  Identities=15%  Similarity=0.199  Sum_probs=47.3

Q ss_pred             hHHHHHHHHh-hhcCCCCCCCCCceEEe--eCcchHHh-hh--CCccccCCccce-------eEEEECCCCCEEEEEecc
Q psy13875          5 DEGDEVWLED-VKQGDGGLGDLKYPLLA--DFKKEIAT-SY--GVLIESAGIPLR-------GLFIIDTKGVLRQITVND   71 (105)
Q Consensus         5 ~~sh~~w~~~-~~~~~~~~~~l~fplls--D~~~~vak-~y--gv~~~~~G~~~r-------atfiID~~G~V~~~~~~~   71 (105)
                      ++..++|+++ .        +++||+++  |.++..+. .|  ++.      ..|       ++||||++|+|++.+.+.
T Consensus       101 ~~~~~~~~~~~~--------~~~~p~~~~~d~~g~~~~~~~~~~~~------~~P~~~~~~~~~~lid~~G~i~~~~~g~  166 (181)
T 2p31_A          101 NKEIESFARRTY--------SVSFPMFSKIAVTGTGAHPAFKYLAQ------TSGKEPTWNFWKYLVAPDGKVVGAWDPT  166 (181)
T ss_dssp             HHHHHHHHHHHH--------CCCSCBBCCCCCSSTTSCHHHHHHHH------HHSCCCCSTTCEEEECTTSCEEEEECTT
T ss_pred             HHHHHHHHHhhc--------CCCceeEeecccCCccchhhhhhhhh------cCCCccccceeEEEEcCCCCEEEEeCCC
Confidence            4577888876 3        67899996  45565543 33  332      235       999999999999998764


Q ss_pred             CCCCCCHHHHHHHHHhh
Q psy13875         72 LPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        72 ~~~~~~~~eil~~l~~l   88 (105)
                      .    +.+++.+.|+++
T Consensus       167 ~----~~~~l~~~i~~l  179 (181)
T 2p31_A          167 V----SVEEVRPQITAL  179 (181)
T ss_dssp             S----CHHHHHHHHHTT
T ss_pred             C----CHHHHHHHHHHH
Confidence            3    577888888765

>2i3y_A Epididymal secretory glutathione peroxidase; thioredoxin fold, epididymal androgen related protein, struc genomics, structural genomics consortium; 2.00A {Homo sapiens}

Probab=98.28  E-value=1.1e-06  Score=62.30  Aligned_cols=80  Identities=19%  Similarity=0.109  Sum_probs=48.6

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeC--cchHH-hhhCCcccc-------CC--------------c-cceeEEEEC
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADF--KKEIA-TSYGVLIES-------AG--------------I-PLRGLFIID   59 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~--~~~va-k~ygv~~~~-------~G--------------~-~~ratfiID   59 (105)
                      ++.+++|++.....  .-.+++||+++|.  ++..+ ..|+.....       .|              + -.|++||||
T Consensus       107 ~~~i~~f~~~~~~~--~~~~~~fpll~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~npttfLID  184 (215)
T 2i3y_A          107 NKEILPGLKYVRPG--GGFVPSFQLFEKGDVNGEKEQKVFSFLKHSCPHPSEILGTFKSISWDPVKVHDIRWNFEKFLVG  184 (215)
T ss_dssp             HHHHHHHHHHTSSC--TTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCTTTCCSSSCCTTCCCSTTCEEEEC
T ss_pred             HHHHHHHHHhccch--hccCccceeEeeeccCCcccchHHHHHHhhCcccccccccccccccccccccccccCceEEEEC
Confidence            46789999710000  0027899999875  35432 233321100       01              0 127999999


Q ss_pred             CCCCEEEEEeccCCCCCCHHHHHHHHHhhhh
Q psy13875         60 TKGVLRQITVNDLPVGRSVEEVLRLVKAFQF   90 (105)
Q Consensus        60 ~~G~V~~~~~~~~~~~~~~~eil~~l~~l~~   90 (105)
                      ++|+|++.+.+..    +.+++.+.|++|..
T Consensus       185 ~~G~vv~~~~g~~----~~~~l~~~I~~ll~  211 (215)
T 2i3y_A          185 PDGIPVMRWSHRA----TVSSVKTDILAYLK  211 (215)
T ss_dssp             TTSCEEEEECTTS----CHHHHHHHHHHHGG
T ss_pred             CCCeEEEEeCCCC----CHHHHHHHHHHHHH
Confidence            9999999997643    46778888877653

>3cmi_A Peroxiredoxin HYR1; thioredoxin-like fold, oxidoreductase, peroxidase, redox-ACT center; 2.02A {Saccharomyces cerevisiae}

Probab=98.27  E-value=6e-07  Score=60.05  Aligned_cols=65  Identities=17%  Similarity=0.286  Sum_probs=37.7

Q ss_pred             HHHHHHH-HhhhcCCCCCCCCCceEEeeCc--ch-HHhh--------hCCccccCCccce------eEEEECCCCCEEEE
Q psy13875          6 EGDEVWL-EDVKQGDGGLGDLKYPLLADFK--KE-IATS--------YGVLIESAGIPLR------GLFIIDTKGVLRQI   67 (105)
Q Consensus         6 ~sh~~w~-~~~~~~~~~~~~l~fpllsD~~--~~-vak~--------ygv~~~~~G~~~r------atfiID~~G~V~~~   67 (105)
                      +..++|+ ++        .+++||+++|.+  +. +++.        ||+.    |  .|      ++||||++|+|++.
T Consensus        84 ~~~~~~~~~~--------~~~~~p~~~d~d~~~~~~~~~~~~~~~~~~~v~----~--~P~i~~~~~~~lid~~G~i~~~  149 (171)
T 3cmi_A           84 EEIAQFCQLN--------YGVTFPIMKKIDVNGGNEDPVYKFLKSQKSGML----G--LRGIKWNFEKFLVDKKGKVYER  149 (171)
T ss_dssp             -------------------CCCSCBBCCCBSSSTTBCHHHHHHHHHSCCSS----S--CCSCCSTTCEEEECSSSCEEEE
T ss_pred             HHHHHHHHhc--------cCCCceEEeeccCCCccchHHHHHHHhccCCcC----C--CCcccccceEEEECCCCCEEEE
Confidence            4567777 55        278999998743  44 3333        4443    3  45      99999999999999


Q ss_pred             EeccCCCCCCHHHHHHHHHhh
Q psy13875         68 TVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        68 ~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +.+..    +.+++.+.|+++
T Consensus       150 ~~g~~----~~~~l~~~i~~l  166 (171)
T 3cmi_A          150 YSSLT----KPSSLSETIEEL  166 (171)
T ss_dssp             ECTTS----CGGGGHHHHHHH
T ss_pred             eCCCC----CHHHHHHHHHHH
Confidence            98644    345556666554

>2r37_A Glutathione peroxidase 3; plasma, structural genomics consort oxidoreductase, secreted, selenium, selenocysteine; 1.85A {Homo sapiens}

Probab=98.26  E-value=1.3e-06  Score=61.34  Aligned_cols=79  Identities=19%  Similarity=0.112  Sum_probs=47.3

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeC--cchHH-hhhCCcccc-------CC--------------c-cceeEEEEC
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADF--KKEIA-TSYGVLIES-------AG--------------I-PLRGLFIID   59 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~--~~~va-k~ygv~~~~-------~G--------------~-~~ratfiID   59 (105)
                      ++.+++|++....  +.-.+++||+++|.  ++..+ ..|+.....       .|              + -.|++||||
T Consensus        89 ~~~i~~f~~~~~~--~~~~~~~fp~l~d~d~~g~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~p~~~~~i~~~~ttflID  166 (207)
T 2r37_A           89 NSEILPTLKYVRP--GGGFVPNFQLFEKGDVNGEKEQKFYTFLKNSCPPTSELLGTSDRLFWEPMKVHDIRWNFEKFLVG  166 (207)
T ss_dssp             HHHHHHHHHHTSS--CTTCCCSSEEBCCCCSSSTTCCHHHHHHHHHSCCSCSCCCCGGGBCCSSCCTTCCCSTTCEEEEC
T ss_pred             HHHHHHHHHhcch--hhccCccceeeeEeccCCcccchHHHHHHhhCccccccccccccccccccccCcccccceEEEEC
Confidence            4678999971000  00027899999875  35432 233321100       01              1 127999999


Q ss_pred             CCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         60 TKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        60 ~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++|+|++++.+..    +.+++.+.|++|.
T Consensus       167 ~~G~i~~~~~g~~----~~~~l~~~I~~ll  192 (207)
T 2r37_A          167 PDGIPIMRWHHRT----TVSNVKMDILSYM  192 (207)
T ss_dssp             TTSCEEEEECTTS----CHHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCC----CHHHHHHHHHHHH
Confidence            9999999997643    4567777776654

>2gs3_A PHGPX, GPX-4, phospholipid hydroperoxide glutathione peroxidase; GSHPX-4,phospholipid hydroperoxide; 1.90A {Homo sapiens}

Probab=98.24  E-value=1e-06  Score=59.89  Aligned_cols=71  Identities=11%  Similarity=0.039  Sum_probs=45.8

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEe--eCcchHHh-hhCCcccc------CCc---cceeEEEECCCCCEEEEEeccC
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLA--DFKKEIAT-SYGVLIES------AGI---PLRGLFIIDTKGVLRQITVNDL   72 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fplls--D~~~~vak-~ygv~~~~------~G~---~~ratfiID~~G~V~~~~~~~~   72 (105)
                      ++..++|+++.        +++||+++  |.++..+. .|+.+...      .|.   ..|++||||++|+|++.+.+..
T Consensus       101 ~~~~~~~~~~~--------~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~g~~~~~i~~~P~~~lid~~G~i~~~~~g~~  172 (185)
T 2gs3_A          101 NEEIKEFAAGY--------NVKFDMFSKICVNGDDAHPLWKWMKIQPKGKGILGNAIKWNFTKFLIDKNGCVVKRYGPME  172 (185)
T ss_dssp             HHHHHHHHHHT--------TCCSEEBCCCBSSSTTBCHHHHHHTTSGGGCCSSSSSCCSSCCEEEECTTSCEEEEECTTS
T ss_pred             HHHHHHHHHHc--------CCCCeeeeeeccCChhhhHHHHHHHhhcccccccCCcccccceEEEECCCCCEEEeeCCCC
Confidence            45678898762        78999997  66776554 45321110      011   1489999999999999988643


Q ss_pred             CCCCCHHHHHHHHHh
Q psy13875         73 PVGRSVEEVLRLVKA   87 (105)
Q Consensus        73 ~~~~~~~eil~~l~~   87 (105)
                          +.+++.+.|++
T Consensus       173 ----~~~~l~~~i~~  183 (185)
T 2gs3_A          173 ----EPLVIEKDLPH  183 (185)
T ss_dssp             ----CGGGGGGGHHH
T ss_pred             ----CHHHHHHHHHH
Confidence                33455555544

>2v1m_A Glutathione peroxidase; selenium, selenocysteine, oxidoreductase, lipid peroxidase, schistosoma detoxification pathway; 1.00A {Schistosoma mansoni} PDB: 2wgr_A

Probab=98.22  E-value=3e-06  Score=55.78  Aligned_cols=71  Identities=11%  Similarity=0.123  Sum_probs=47.3

Q ss_pred             hHHHHHH-HHhhhcCCCCCCCCCceEEe--eCcchHHh-hh--------CCccccCCccceeEEEECCCCCEEEEEeccC
Q psy13875          5 DEGDEVW-LEDVKQGDGGLGDLKYPLLA--DFKKEIAT-SY--------GVLIESAGIPLRGLFIIDTKGVLRQITVNDL   72 (105)
Q Consensus         5 ~~sh~~w-~~~~~~~~~~~~~l~fplls--D~~~~vak-~y--------gv~~~~~G~~~ratfiID~~G~V~~~~~~~~   72 (105)
                      ++..++| .++.        +++||+++  |.++.++. .|        |+.... -...|++||||++|+|++.+.+..
T Consensus        83 ~~~~~~~~~~~~--------~~~~~~~~~~d~~~~~~~~~~~~l~~~~~~~~~~~-i~~~P~~~lid~~G~i~~~~~g~~  153 (169)
T 2v1m_A           83 EAEIKKFVTEKY--------GVQFDMFSKIKVNGSDADDLYKFLKSRQHGTLTNN-IKWNFSKFLVDRQGQPVKRYSPTT  153 (169)
T ss_dssp             HHHHHHHHHHHH--------CCCSEEBCCCCCSSTTSCHHHHHHHHHSCCSSSCS-CCSTTCEEEECTTSCEEEEECTTS
T ss_pred             HHHHHHHHHHhc--------CCCCceEEEEeecCccccHHHHHHHhhcCCccCCc-ccccceEEEECCCCCEEEEcCCCC
Confidence            4577888 4663        78999997  77777654 44        543100 002589999999999999988644


Q ss_pred             CCCCCHHHHHHHHHhh
Q psy13875         73 PVGRSVEEVLRLVKAF   88 (105)
Q Consensus        73 ~~~~~~~eil~~l~~l   88 (105)
                          +.+++.+.|+++
T Consensus       154 ----~~~~l~~~i~~l  165 (169)
T 2v1m_A          154 ----APYDIEGDIMEL  165 (169)
T ss_dssp             ----CGGGGHHHHHHH
T ss_pred             ----CHHHHHHHHHHH
Confidence                345566666554

>3dwv_A Glutathione peroxidase-like protein; alpha beta, 3-layer(ABA) sandwich, glutaredoxin fold, oxidor peroxidase; 1.41A {Trypanosoma brucei} PDB: 2rm5_A 2rm6_A 3e0u_A

Probab=98.13  E-value=2.1e-06  Score=58.43  Aligned_cols=58  Identities=24%  Similarity=0.433  Sum_probs=40.7

Q ss_pred             CCCceEEe--eCcchHHh-hh--------CCccccCCc-cce---eEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLLA--DFKKEIAT-SY--------GVLIESAGI-PLR---GLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fplls--D~~~~vak-~y--------gv~~~~~G~-~~r---atfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +++||+++  |.++..+. .|        +++    |. .+|   ++||||++|+|++.+.+..    +.+++.+.|+++
T Consensus       110 ~~~~p~~~~~d~~~~~~~~~~~~l~~~~~~~~----~~~~iP~~~~~~liD~~G~i~~~~~g~~----~~~~l~~~i~~l  181 (187)
T 3dwv_A          110 KAEFPIMAKINVNGENAHPLYEYMKKTKPGIL----ATKAIKWNFTSFLIDRDGVPVERFSPGA----SVKDIEEKLIPL  181 (187)
T ss_dssp             CCSSCBBCCBCCSCC-CCHHHHHHHHHSCCSB----SSSSCCSTTCEEEECTTSCEEEEECTTC----CHHHHHHHHHHH
T ss_pred             CCCCceeeccccCCcchhHHHHHHHhhcCCcc----CCCccccceeEEEECCCCCEEEEECCCC----CHHHHHHHHHHH
Confidence            78999997  56665542 23        333    32 367   9999999999999987643    567777777765


Q ss_pred             h
Q psy13875         89 Q   89 (105)
Q Consensus        89 ~   89 (105)
                      -
T Consensus       182 L  182 (187)
T 3dwv_A          182 L  182 (187)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3kij_A Probable glutathione peroxidase 8; human PDI-peroxidase, membrane, oxidoreductase, transmembrane; 1.80A {Homo sapiens} SCOP: c.47.1.0 PDB: 3cyn_A

Probab=98.07  E-value=3.3e-06  Score=56.97  Aligned_cols=77  Identities=10%  Similarity=0.248  Sum_probs=45.9

Q ss_pred             chHHHHHHHHh-hhcCCCCCCCCCceEEeeC--cchHHh-hhCCccccCCcccee----EEEECCCCCEEEEEeccCCCC
Q psy13875          4 VDEGDEVWLED-VKQGDGGLGDLKYPLLADF--KKEIAT-SYGVLIESAGIPLRG----LFIIDTKGVLRQITVNDLPVG   75 (105)
Q Consensus         4 ~~~sh~~w~~~-~~~~~~~~~~l~fpllsD~--~~~vak-~ygv~~~~~G~~~ra----tfiID~~G~V~~~~~~~~~~~   75 (105)
                      .++..++|+++ .        +++||+++|.  ++..+. .|+......| ..|.    +||||++|+|++.+.+..+..
T Consensus        89 ~~~~~~~~~~~~~--------~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~p~~~~~~~lid~~G~i~~~~~g~~~~~  159 (180)
T 3kij_A           89 PSKEVESFARKNY--------GVTFPIFHKIKILGSEGEPAFRFLVDSSK-KEPRWNFWKYLVNPEGQVVKFWRPEEPIE  159 (180)
T ss_dssp             CHHHHHHHHHHHH--------CCCSCBBCCCCCSSTTCCHHHHHHHHHHT-CCCSSTTCEEEECTTSCEEEEECTTCCGG
T ss_pred             CHHHHHHHHHHhc--------CCCCceeeeeeccCccccHHHHHHHhcCC-CCccccceEEEECCCCCEEEEECCCCCHH
Confidence            34567778866 3        6789988743  333222 2221111011 2466    999999999999998765444


Q ss_pred             CCHHHHHHHHHhhh
Q psy13875         76 RSVEEVLRLVKAFQ   89 (105)
Q Consensus        76 ~~~~eil~~l~~l~   89 (105)
                      .-.+++.+.|+++.
T Consensus       160 ~l~~~i~~lL~~~~  173 (180)
T 3kij_A          160 VIRPDIAALVRQVI  173 (180)
T ss_dssp             GTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            34455555555544

>2f8a_A Glutathione peroxidase 1; thioredoxin fold, structural genomics, structural genomics consortium, SGC, oxidoreductase; 1.50A {Homo sapiens} SCOP: c.47.1.10 PDB: 1gp1_A 2he3_A

Probab=98.05  E-value=5.1e-06  Score=58.06  Aligned_cols=33  Identities=12%  Similarity=0.128  Sum_probs=25.0

Q ss_pred             ceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         52 LRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        52 ~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      .|+|||||++|+|++.+.+..    +.+++.+.|+++
T Consensus       173 ~p~tflID~~G~i~~~~~g~~----~~~~l~~~I~~l  205 (208)
T 2f8a_A          173 NFEKFLVGPDGVPLRRYSRRF----QTIDIEPDIEAL  205 (208)
T ss_dssp             TTCEEEECTTSCEEEEECTTS----CGGGGHHHHHHH
T ss_pred             CceEEEEcCCCcEEEEeCCCC----CHHHHHHHHHHH
Confidence            489999999999999998654    335566666554

>4hde_A SCO1/SENC family lipoprotein; structural genomics, the center for structural genomics of I diseases, csgid, niaid; HET: MSE; 1.32A {Bacillus anthracis}

Probab=97.92  E-value=0.00012  Score=49.30  Aligned_cols=79  Identities=16%  Similarity=0.328  Sum_probs=50.2

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcch-HH----hhhCCcccc--CC-c-cceeEEEECCCCCEEEEEeccCCC
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKE-IA----TSYGVLIES--AG-I-PLRGLFIIDTKGVLRQITVNDLPV   74 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~-va----k~ygv~~~~--~G-~-~~ratfiID~~G~V~~~~~~~~~~   74 (105)
                      .++..++|+++.     +.....+.+|++...+ +.    ..|+.....  .| + -.+++||||++|+|+.++.+..  
T Consensus        82 tp~~l~~y~~~~-----~~~~~~~~~ltg~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~--  154 (170)
T 4hde_A           82 KPENLKAFIQKF-----TEDTSNWNLLTGYSLEDITKFSKDNFQSLVDKPENGQVIHGTSFYLIDQNGKVMKKYSGIS--  154 (170)
T ss_dssp             CHHHHHHHHTTT-----CSCCTTEEEEBCSCHHHHHHHHHHHHCCCCBCCTTSCCBCCCEEEEECTTSCEEEEEESSS--
T ss_pred             cHHHHHHHHHHc-----CCCCCCceecCcccHHHHHHHHHhcccccccCCCCceEEeeeEEEEEcCCCeEEEEECCCC--
Confidence            467788998763     2334456777765432 22    234444221  11 1 2578999999999999987632  


Q ss_pred             CCCHHHHHHHHHhhh
Q psy13875         75 GRSVEEVLRLVKAFQ   89 (105)
Q Consensus        75 ~~~~~eil~~l~~l~   89 (105)
                      ..+.+++++.|++|.
T Consensus       155 ~~~~~~l~~~ik~Ll  169 (170)
T 4hde_A          155 NTPYEDIIRDMKRLA  169 (170)
T ss_dssp             SCCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            346788888888763

>2lus_A Thioredoxion; CR-Trp16, oxidoreductase; NMR {Carcinoscorpius rotundicauda}

Probab=96.94  E-value=4e-06  Score=53.62  Aligned_cols=38  Identities=18%  Similarity=0.394  Sum_probs=31.5

Q ss_pred             ceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEec
Q psy13875         27 YPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVN   70 (105)
Q Consensus        27 fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~   70 (105)
                      +++..|.++.++++||+.      ..|++||||++|+|++.+..
T Consensus        90 ~~~~~~~~~~~~~~~~v~------~~P~~~lid~~G~i~~~~~~  127 (143)
T 2lus_A           90 IPYRSGPASNVTAKYGIT------GIPALVIVKKDGTLISMNGR  127 (143)
Confidence            556677778999999986      36999999999999998643

>2ju5_A Thioredoxin disulfide isomerase; protein, oxidoreductase; NMR {Chlamydophila pneumoniae}

Probab=97.70  E-value=4.1e-05  Score=50.60  Aligned_cols=49  Identities=20%  Similarity=0.177  Sum_probs=39.2

Q ss_pred             eCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         32 DFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        32 D~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      |.+.++++.||+.    |  .|+++|+|++|+|++.. |..  ..+.+++++.|+++.
T Consensus       103 ~~~~~l~~~~~v~----~--~Pt~~~~d~~G~~~~~~-G~~--~~~~~~l~~~l~~~l  151 (154)
T 2ju5_A          103 QKNQELKAQYKVT----G--FPELVFIDAEGKQLARM-GFE--PGGGAAYVSKVKSAL  151 (154)
T ss_dssp             HHHHHHHHHTTCC----S--SSEEEEECTTCCEEEEE-CCC--TTCHHHHHHHHHHHH
T ss_pred             hhHHHHHHHcCCC----C--CCEEEEEcCCCCEEEEe-cCC--CCCHHHHHHHHHHHH
Confidence            3345899999987    4  69999999999999988 754  347888888887754

>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}

Probab=97.45  E-value=0.00025  Score=44.61  Aligned_cols=56  Identities=7%  Similarity=0.102  Sum_probs=43.0

Q ss_pred             CCCceEE---eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL---ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll---sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|-.+   .|.+.++++.||+.    +  .|+++++|++|+++..+.|..    +.+++.++|+++.
T Consensus        58 ~v~~~~v~~~~d~~~~~~~~~~v~----~--~Pt~~~~~~~G~~~~~~~G~~----~~~~l~~~l~~~~  116 (126)
T 2l57_A           58 KFNIYYARLEEEKNIDLAYKYDAN----I--VPTTVFLDKEGNKFYVHQGLM----RKNNIETILNSLG  116 (126)
T ss_dssp             SCEEEEEETTSSHHHHHHHHTTCC----S--SSEEEEECTTCCEEEEEESCC----CHHHHHHHHHHHC
T ss_pred             CeEEEEEeCCCCchHHHHHHcCCc----c--eeEEEEECCCCCEEEEecCCC----CHHHHHHHHHHHh
Confidence            4555544   35678999999987    3  699999999999999887643    6788888887654

>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}

Probab=97.43  E-value=0.00031  Score=44.21  Aligned_cols=47  Identities=26%  Similarity=0.265  Sum_probs=38.4

Q ss_pred             CcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         33 FKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        33 ~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      .+..+++.||+.    +  .|+++++|++|++++.+.|..    +.+++.+.|+++.
T Consensus        74 ~~~~~~~~~~v~----~--~Pt~~~~d~~G~~~~~~~G~~----~~~~l~~~l~~~~  120 (130)
T 2kuc_A           74 EGVELRKKYGVH----A--YPTLLFINSSGEVVYRLVGAE----DAPELLKKVKLGV  120 (130)
T ss_dssp             THHHHHHHTTCC----S--SCEEEEECTTSCEEEEEESCC----CHHHHHHHHHHHH
T ss_pred             chHHHHHHcCCC----C--CCEEEEECCCCcEEEEecCCC----CHHHHHHHHHHHH
Confidence            457899999987    3  699999999999999887643    5778888887754

>1i5g_A Tryparedoxin II; electron transport; HET: TS5; 1.40A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1o6j_A 1o81_A 1oc8_A 1oc9_B 1fg4_A 1oc9_A

Probab=97.32  E-value=0.00011  Score=47.19  Aligned_cols=39  Identities=15%  Similarity=0.216  Sum_probs=31.4

Q ss_pred             CCceEEe-eCcchHHhhhCCccccCCccceeEEEEC-CCCCEEEEEe
Q psy13875         25 LKYPLLA-DFKKEIATSYGVLIESAGIPLRGLFIID-TKGVLRQITV   69 (105)
Q Consensus        25 l~fplls-D~~~~vak~ygv~~~~~G~~~ratfiID-~~G~V~~~~~   69 (105)
                      +.||++. |.+..++++||+.      ..|++|||| ++|+|++.+.
T Consensus        87 ~~~~~~~~d~~~~~~~~~~v~------~~P~~~lid~~~G~i~~~~~  127 (144)
T 1i5g_A           87 LALPFEDRKGMEFLTTGFDVK------SIPTLVGVEADSGNIITTQA  127 (144)
T ss_dssp             EECCTTCHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESCH
T ss_pred             cccccCchHHHHHHHHHcCCC------CCCEEEEEECCCCcEEeccc
Confidence            3566655 6678999999986      369999999 9999998664

>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A

Probab=97.24  E-value=0.00011  Score=47.13  Aligned_cols=50  Identities=16%  Similarity=0.150  Sum_probs=38.0

Q ss_pred             eCcchHHhhhCCccccCCccceeEEEECCCCCEE--EEEeccCCCCCCHHHHHHHHHhhhhh
Q psy13875         32 DFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLR--QITVNDLPVGRSVEEVLRLVKAFQFV   91 (105)
Q Consensus        32 D~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~--~~~~~~~~~~~~~~eil~~l~~l~~~   91 (105)
                      |.+.++++.||+.    |  .|+++++|++|+++  +.+.|..    +.+++++.|+.++..
T Consensus        78 ~~~~~l~~~~~v~----~--~Pt~~~~d~~G~~v~~~~~~G~~----~~~~l~~~l~~~~~~  129 (134)
T 2fwh_A           78 AQDVALLKHLNVL----G--LPTILFFDGQGQEHPQARVTGFM----DAETFSAHLRDRQPH  129 (134)
T ss_dssp             HHHHHHHHHTTCC----S--SSEEEEECTTSCBCGGGCBCSCC----CHHHHHHHHHHC---
T ss_pred             chHHHHHHHcCCC----C--CCEEEEECCCCCEeeeeeeeecc----CHHHHHHHHHhcCcc
Confidence            4467899999987    3  69999999999997  5665533    688899999887643

>3fk8_A Disulphide isomerase; APC61824.1, xylella fastidiosa temecul structural genomics, PSI-2, protein structure initiative; 1.30A {Xylella fastidiosa}

Probab=97.22  E-value=0.0006  Score=43.16  Aligned_cols=55  Identities=18%  Similarity=0.292  Sum_probs=40.4

Q ss_pred             eCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEecc-CCC--CCCHHHHHHHHHhhh
Q psy13875         32 DFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVND-LPV--GRSVEEVLRLVKAFQ   89 (105)
Q Consensus        32 D~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~-~~~--~~~~~eil~~l~~l~   89 (105)
                      |.+.++++.||+...   ...|+++++|++|++++...+. ...  ....+++.++|+++.
T Consensus        75 ~~~~~l~~~~~v~~~---~~~Pt~~~~d~~G~~~~~~~g~~~~~~~~~~~~~l~~~l~~l~  132 (133)
T 3fk8_A           75 DRNLELSQAYGDPIQ---DGIPAVVVVNSDGKVRYTTKGGELANARKMSDQGIYDFFAKIT  132 (133)
T ss_dssp             TSSHHHHHHTTCGGG---GCSSEEEEECTTSCEEEECCSCTTTTGGGSCHHHHHHHHHHHH
T ss_pred             cchHHHHHHhCCccC---CccceEEEECCCCCEEEEecCCcccccccCCHHHHHHHHHHhc
Confidence            677899999999210   1379999999999999998762 221  236778888877654

>1o8x_A Tryparedoxin, TRYX, TXNI; tryparedoxin-I, synchrotron radiation, disulfide bonds tryparedoxin, thioredoxin, trypanosome; 1.3A {Crithidia fasciculata} SCOP: c.47.1.10 PDB: 1okd_A 1qk8_A 1o85_A 1o8w_A 1o7u_A 1ezk_A 1ewx_A

Probab=97.20  E-value=0.00018  Score=46.32  Aligned_cols=39  Identities=15%  Similarity=0.296  Sum_probs=31.5

Q ss_pred             CCceEEe-eCcchHHhhhCCccccCCccceeEEEEC-CCCCEEEEEe
Q psy13875         25 LKYPLLA-DFKKEIATSYGVLIESAGIPLRGLFIID-TKGVLRQITV   69 (105)
Q Consensus        25 l~fplls-D~~~~vak~ygv~~~~~G~~~ratfiID-~~G~V~~~~~   69 (105)
                      +.||++. |.+..++++||+.      ..|++|||| ++|+|++.+.
T Consensus        87 ~~~~~~~~d~~~~~~~~~~v~------~~Pt~~lid~~~G~i~~~~~  127 (146)
T 1o8x_A           87 LAVPFAQSEAVQKLSKHFNVE------SIPTLIGVDADSGDVVTTRA  127 (146)
T ss_dssp             EECCGGGHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESCH
T ss_pred             eeeccchhhHHHHHHHHhCCC------CCCEEEEEECCCCeEEEecc
Confidence            3566655 6678999999986      369999999 9999998764

>1o73_A Tryparedoxin; electron transport, trypanosomatid, thioredoxin; 2.28A {Trypanosoma brucei brucei} SCOP: c.47.1.10

Probab=97.05  E-value=0.00029  Score=44.93  Aligned_cols=39  Identities=21%  Similarity=0.377  Sum_probs=30.5

Q ss_pred             CCceEEe-eCcchHHhhhCCccccCCccceeEEEEC-CCCCEEEEEe
Q psy13875         25 LKYPLLA-DFKKEIATSYGVLIESAGIPLRGLFIID-TKGVLRQITV   69 (105)
Q Consensus        25 l~fplls-D~~~~vak~ygv~~~~~G~~~ratfiID-~~G~V~~~~~   69 (105)
                      +.||++. |.+..++++||+.      ..|++|||| ++|+|++.+.
T Consensus        87 ~~~~~~~~~~~~~~~~~~~v~------~~Pt~~lid~~~G~i~~~~~  127 (144)
T 1o73_A           87 LALPFDQRSTVSELGKTFGVE------SIPTLITINADTGAIIGTQA  127 (144)
T ss_dssp             EECCTTCHHHHHHHHHHHTCC------SSSEEEEEETTTCCEEESCH
T ss_pred             eEeeccchhHHHHHHHHcCCC------CCCEEEEEECCCCeEEecch
Confidence            3455554 5678899999986      369999999 8999998653

>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}

Probab=96.94  E-value=0.0024  Score=40.73  Aligned_cols=55  Identities=11%  Similarity=0.273  Sum_probs=40.7

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+++++|++|+++ .+.+.    .+.+++.++|+++.
T Consensus        70 ~v~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~~~~G~~~-~~~G~----~~~~~l~~~l~~~~  125 (136)
T 2l5l_A           70 QIVIYKVDTEKEQELAGAFGIR----S--IPSILFIPMEGKPE-MAQGA----MPKASFKKAIDEFL  125 (136)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCC----S--SCEEEEECSSSCCE-EEESC----CCHHHHHHHHHHHH
T ss_pred             CEEEEEEeCCCCHHHHHHcCCC----C--CCEEEEECCCCcEE-EEeCC----CCHHHHHHHHHHHh
Confidence            3444433 45678899999987    3  69999999999987 45553    36788888887754

>3s9f_A Tryparedoxin; thioredoxin fold, disulfide reductase, electron transport; 1.80A {Leishmania major}

Probab=96.86  E-value=0.00053  Score=45.54  Aligned_cols=38  Identities=13%  Similarity=0.204  Sum_probs=29.4

Q ss_pred             CceEEeeCc-chHHhhhCCccccCCccceeEEEECCC-CCEEEEEe
Q psy13875         26 KYPLLADFK-KEIATSYGVLIESAGIPLRGLFIIDTK-GVLRQITV   69 (105)
Q Consensus        26 ~fpllsD~~-~~vak~ygv~~~~~G~~~ratfiID~~-G~V~~~~~   69 (105)
                      .||+..+.. ..+++.||+.      ..|++||||++ |+|++...
T Consensus       108 ~~~~~~~~~~~~l~~~~~v~------~~Pt~~lid~~~G~iv~~~~  147 (165)
T 3s9f_A          108 SIPFANRNIVEALTKKYSVE------SIPTLIGLNADTGDTVTTRA  147 (165)
T ss_dssp             ECCTTCHHHHHHHHHHTTCC------SSSEEEEEETTTCCEEESCH
T ss_pred             ccccCchhHHHHHHHHcCCC------CCCEEEEEeCCCCEEEeccc
Confidence            455544433 7999999987      36999999998 99998654

>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A

Probab=96.59  E-value=0.005  Score=39.08  Aligned_cols=55  Identities=15%  Similarity=0.265  Sum_probs=40.8

Q ss_pred             CCCceE-EeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPL-LADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpl-lsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|-. -.|.+..+++.||+.    +  .|+.+++|++|++. .+.|.    .+.+++.+.|+.+-
T Consensus        83 ~~~~~~v~~~~~~~~~~~~~v~----~--~Pt~~~~~~~g~~~-~~~G~----~~~~~l~~~l~~~l  138 (141)
T 3hxs_A           83 KIYIYKVNVDKEPELARDFGIQ----S--IPTIWFVPMKGEPQ-VNMGA----LSKEQLKGYIDKVL  138 (141)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCC----S--SSEEEEECSSSCCE-EEESC----CCHHHHHHHHHHTT
T ss_pred             ceEEEEEECCCCHHHHHHcCCC----C--cCEEEEEeCCCCEE-EEeCC----CCHHHHHHHHHHHH
Confidence            344433 356678999999987    3  69999999999987 55553    36788888887653

>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A

Probab=96.56  E-value=0.0047  Score=37.89  Aligned_cols=55  Identities=25%  Similarity=0.372  Sum_probs=41.9

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|-.+ .|.+.+++++||+.    +  .|+++++ ++|+++..+.|..    +.+++.++++++.
T Consensus        49 ~v~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~~  104 (112)
T 2voc_A           49 KLKIVKIDVDENQETAGKYGVM----S--IPTLLVL-KDGEVVETSVGFK----PKEALQELVNKHL  104 (112)
T ss_dssp             TCEEEEEETTTCCSHHHHTTCC----S--BSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHTTS
T ss_pred             CcEEEEEECCCCHHHHHHcCCC----c--ccEEEEE-eCCEEEEEEeCCC----CHHHHHHHHHHHH
Confidence            3455444 46678999999987    3  6999999 9999999888643    6788888887644

>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}

Probab=96.38  E-value=0.0078  Score=35.95  Aligned_cols=54  Identities=17%  Similarity=0.248  Sum_probs=40.4

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.|..    +.+++.++|+++
T Consensus        52 ~~~~~~v~~~~~~~~~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  106 (107)
T 2i4a_A           52 KVTVAKVNIDDNPETPNAYQVR----S--IPTLMLV-RDGKVIDKKVGAL----PKSQLKAWVESA  106 (107)
T ss_dssp             SEEEEEEETTTCCHHHHHTTCC----S--SSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHT
T ss_pred             cEEEEEEECCCCHHHHHhcCCC----c--cCEEEEE-eCCEEEEEecCCC----CHHHHHHHHHhc
Confidence            3454444 35678999999987    3  6999999 9999998887633    677888887664

>3f9u_A Putative exported cytochrome C biogenesis-related; exported cytochrome C biogenesis-related protein, bacteroide fragilis; 2.20A {Bacteroides fragilis nctc 9343}

Probab=96.34  E-value=0.0012  Score=43.62  Aligned_cols=42  Identities=10%  Similarity=0.116  Sum_probs=32.9

Q ss_pred             HhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         38 ATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        38 ak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.||+.    |  .|+++|||++|+|+..+.|..   .+.+++++.|++.
T Consensus       123 ~~~~~v~----~--~Pt~~lid~~G~~~~~~~G~~---~~~~~l~~~l~~~  164 (172)
T 3f9u_A          123 RVKFGAN----A--QPFYVLIDNEGNPLNKSYAYD---EDISKYINFLQTG  164 (172)
T ss_dssp             HHHHSCC----C--SSEEEEECTTSCBSSCCBCSC---CCHHHHHHHHHHH
T ss_pred             HHHcCCC----C--cceEEEECCCCCEEeeccCCC---CCHHHHHHHHHHH
Confidence            6888887    4  699999999999998887644   2377787777664

>2trx_A Thioredoxin; electron transport; 1.68A {Escherichia coli} SCOP: c.47.1.1 PDB: 1skr_B* 1skw_B* 1sl0_B* 1sks_B* 1sl2_B* 1t7p_B* 1t8e_B* 1tk0_B* 1tk5_B* 1tk8_B* 1tkd_B* 1sl1_B* 1x9s_B* 1x9w_B* 1xoa_A 1xob_A 1zyq_B* 2ajq_B* 2bto_T* 2h6x_A ...

Probab=96.29  E-value=0.0089  Score=35.90  Aligned_cols=54  Identities=24%  Similarity=0.369  Sum_probs=39.9

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        52 ~~~~~~v~~~~~~~~~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  106 (108)
T 2trx_A           52 KLTVAKLNIDQNPGTAPKYGIR----G--IPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDAN  106 (108)
T ss_dssp             TEEEEEEETTTCTTHHHHTTCC----S--SSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCHHHHHHcCCc----c--cCEEEEE-eCCEEEEEEecCC----CHHHHHHHHHHh
Confidence            3444443 45678899999987    3  6999999 8999998887643    577787777654

>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A

Probab=96.28  E-value=0.0066  Score=36.31  Aligned_cols=53  Identities=13%  Similarity=0.226  Sum_probs=39.4

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +.|-.+ .|.+.++++.||+.    +  .|+++++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        50 v~~~~v~~~~~~~~~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  103 (105)
T 1nsw_A           50 VTVAKLNVDENPETTSQFGIM----S--IPTLILF-KGGRPVKQLIGYQ----PKEQLEAQLADV  103 (105)
T ss_dssp             CEEEEEETTTCHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEESCC----CHHHHHHHTTTT
T ss_pred             cEEEEEECcCCHHHHHHcCCc----c--ccEEEEE-eCCeEEEEEecCC----CHHHHHHHHHHH
Confidence            454444 45678899999987    3  6999999 8999998887643    567777777654

>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A

Probab=96.26  E-value=0.0057  Score=40.75  Aligned_cols=54  Identities=13%  Similarity=0.278  Sum_probs=41.5

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      +.|--+ .|.+.+++.+|||.      .+|+.++. ++|+++....|..    +.+++.+.|+++.
T Consensus        70 v~~~KVdvDe~~~lA~~ygV~------sIPTlilF-k~G~~v~~~~G~~----~k~~l~~~i~~~l  124 (140)
T 2qgv_A           70 WQVAIADLEQSEAIGDRFGAF------RFPATLVF-TGGNYRGVLNGIH----PWAELINLMRGLV  124 (140)
T ss_dssp             CEEEECCHHHHHHHHHHHTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCHHHHHHcCCc------cCCEEEEE-ECCEEEEEEecCC----CHHHHHHHHHHHh
Confidence            555544 56788999999997      47988888 8999999998753    5677777777643

>2es7_A Q8ZP25_salty, putative thiol-disulfide isomerase and thioredoxi; structural genomics, PSI, protein structure initiative; 2.80A {Salmonella typhimurium} SCOP: c.47.1.20 PDB: 2gzp_A 2jzt_A

Probab=96.24  E-value=0.0042  Score=40.78  Aligned_cols=48  Identities=19%  Similarity=0.278  Sum_probs=34.6

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      .|.+.+++++||+.      ..|+++++ ++|+++..+.|..    +.+++.+.|+++.
T Consensus        77 ~d~~~~la~~~~V~------~iPT~~~f-k~G~~v~~~~G~~----~~~~l~~~i~~~l  124 (142)
T 2es7_A           77 LEQSEAIGDRFNVR------RFPATLVF-TDGKLRGALSGIH----PWAELLTLMRSIV  124 (142)
T ss_dssp             HHHHHHHHHTTTCC------SSSEEEEE-SCC----CEESCC----CHHHHHHHHHHHH
T ss_pred             CCCCHHHHHhcCCC------cCCeEEEE-eCCEEEEEEeCCC----CHHHHHHHHHHHh
Confidence            46678999999997      36999999 9999998887743    5777888777654

>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1

Probab=96.23  E-value=0.0099  Score=35.93  Aligned_cols=55  Identities=18%  Similarity=0.153  Sum_probs=41.3

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|-.+ .|.+.++++.||+.      ..|+.+++ ++|+++..+.|.    .+.+++.++|+++.
T Consensus        57 ~v~~~~v~~~~~~~~~~~~~v~------~~Pt~~~~-~~G~~~~~~~g~----~~~~~l~~~l~~~l  112 (115)
T 1thx_A           57 RLKVVKLEIDPNPTTVKKYKVE------GVPALRLV-KGEQILDSTEGV----ISKDKLLSFLDTHL  112 (115)
T ss_dssp             TCEEEEEESTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHHH
T ss_pred             cEEEEEEEcCCCHHHHHHcCCC------ceeEEEEE-cCCEEEEEecCC----CCHHHHHHHHHHHh
Confidence            3555444 45678899999987      36999999 999999888763    36778888887653

>1oaz_A Thioredoxin 1; immune system, antibody/complex, antibody, allergy, IGE, conformational diversity, multispecficity, redox-active center; 2.77A {Escherichia coli} SCOP: c.47.1.1

Probab=96.21  E-value=0.0096  Score=37.53  Aligned_cols=47  Identities=23%  Similarity=0.384  Sum_probs=37.9

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      .|.+.++++.||+.    |  .|+.+++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        75 ~d~~~~l~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  121 (123)
T 1oaz_A           75 IDQNPGTAPKYGIR----G--IPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDAN  121 (123)
T ss_dssp             TTSCTTTGGGGTCC----B--SSEEEEE-ESSSEEEEEESCC----CHHHHHHHHTTT
T ss_pred             CCCCHHHHHHcCCC----c--cCEEEEE-ECCEEEEEEeCCC----CHHHHHHHHHHH
Confidence            46678999999987    3  6999999 9999998887643    678888888764

>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A

Probab=96.18  E-value=0.012  Score=35.63  Aligned_cols=53  Identities=17%  Similarity=0.226  Sum_probs=37.8

Q ss_pred             CCCceEE-ee-CcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-AD-FKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD-~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|--+ .| .+..++++||+.    +  .|+ |+++++|+++..+.|.     +.+++.+.|+++
T Consensus        55 ~v~~~~vd~~~~~~~~~~~~~v~----~--~Pt-~~~~~~G~~~~~~~G~-----~~~~l~~~l~~~  109 (111)
T 2pu9_C           55 DVIFLKLDCNQENKTLAKELGIR----V--VPT-FKILKENSVVGEVTGA-----KYDKLLEAIQAA  109 (111)
T ss_dssp             TSEEEEEECSSTTHHHHHHHCCS----B--SSE-EEEESSSSEEEEEESS-----CHHHHHHHHHHH
T ss_pred             CeEEEEEecCcchHHHHHHcCCC----e--eeE-EEEEeCCcEEEEEcCC-----CHHHHHHHHHHh
Confidence            3444433 33 568999999987    3  576 8888999999888753     367777777664

>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0

Probab=96.15  E-value=0.012  Score=35.15  Aligned_cols=54  Identities=22%  Similarity=0.332  Sum_probs=41.1

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+..+++.||+.      ..|+.+++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        53 ~~~~~~v~~~~~~~~~~~~~i~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~~  107 (109)
T 3tco_A           53 KAVFGRLNVDENQKIADKYSVL------NIPTTLIF-VNGQLVDSLVGAV----DEDTLESTVNKY  107 (109)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred             CceEEEEccccCHHHHHhcCcc------cCCEEEEE-cCCcEEEeeeccC----CHHHHHHHHHHH
Confidence            3455444 55678999999987      36999999 9999999887643    677888887764

>1w4v_A Thioredoxin, mitochondrial; antioxidant enzyme, mitochondrion, electron TRA oxidoreductase; 1.80A {Homo sapiens} PDB: 1uvz_A 1w89_A

Probab=96.14  E-value=0.011  Score=36.61  Aligned_cols=54  Identities=13%  Similarity=0.193  Sum_probs=39.8

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.|..    +.+++.++|+++
T Consensus        63 ~v~~~~vd~d~~~~l~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  117 (119)
T 1w4v_A           63 KVVMAKVDIDDHTDLAIEYEVS----A--VPTVLAM-KNGDVVDKFVGIK----DEDQLEAFLKKL  117 (119)
T ss_dssp             SSEEEEEETTTTHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred             CeEEEEEeCCCCHHHHHHcCCC----c--ccEEEEE-eCCcEEEEEcCCC----CHHHHHHHHHHH
Confidence            3454444 45677899999987    3  6999888 8999998887643    577787777654

>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1

Probab=96.14  E-value=0.017  Score=34.53  Aligned_cols=53  Identities=17%  Similarity=0.372  Sum_probs=38.0

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +.|-.+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        52 ~~~~~v~~~~~~~~~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  105 (107)
T 1dby_A           52 LKCVKLNTDESPNVASEYGIR----S--IPTIMVF-KGGKKCETIIGAV----PKATIVQTVEKY  105 (107)
T ss_dssp             CEEEEEETTTCHHHHHHHTCC----S--SCEEEEE-SSSSEEEEEESCC----CHHHHHHHHHHH
T ss_pred             eEEEEEECCCCHHHHHHCCCC----c--CCEEEEE-eCCEEEEEEeCCC----CHHHHHHHHHHH
Confidence            444433 45678899999987    3  5886666 8999998887643    567777777654

>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A

Probab=96.12  E-value=0.013  Score=34.90  Aligned_cols=55  Identities=15%  Similarity=0.191  Sum_probs=41.3

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.|..    +.+++.++|+++.
T Consensus        50 ~~~~~~v~~~~~~~~~~~~~v~----~--~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~~l  105 (109)
T 2yzu_A           50 KLLVAKLDVDENPKTAMRYRVM----S--IPTVILF-KDGQPVEVLVGAQ----PKRNYQAKIEKHL  105 (109)
T ss_dssp             TBEEEEEETTTCHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHTTC
T ss_pred             ceEEEEEECCCCHhHHHhCCCC----c--CCEEEEE-eCCcEeeeEeCCC----CHHHHHHHHHHHh
Confidence            3454444 46678999999987    3  6999999 8999998887643    6788888887654

>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A

Probab=96.11  E-value=0.013  Score=34.43  Aligned_cols=53  Identities=23%  Similarity=0.369  Sum_probs=39.8

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +.|-.+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.|..    +.+++.++|+++
T Consensus        48 ~~~~~v~~~~~~~~~~~~~v~----~--~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~~  101 (104)
T 2e0q_A           48 VGFGKLNSDENPDIAARYGVM----S--LPTVIFF-KDGEPVDEIIGAV----PREEIEIRIKNL  101 (104)
T ss_dssp             SEEEEEETTTCHHHHHHTTCC----S--SCEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred             ceEEEEECCCCHHHHHhCCcc----c--cCEEEEE-ECCeEhhhccCCC----CHHHHHHHHHHH
Confidence            455444 46678899999987    3  6999988 8999998887643    577787777664

>2o8v_B Thioredoxin 1; disulfide crosslinked complex, oxidoreductase; 3.00A {Escherichia coli}

Probab=96.00  E-value=0.011  Score=37.42  Aligned_cols=54  Identities=24%  Similarity=0.369  Sum_probs=40.2

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+++++ ++|+++..+.|..    +.+++.++|+++
T Consensus        72 ~v~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  126 (128)
T 2o8v_B           72 KLTVAKLNIDQNPGTAPKYGIR----G--IPTLLLF-KNGEVAATKVGAL----SKGQLKEFLDAN  126 (128)
T ss_dssp             TEEEEEEETTTCCTTSGGGTCC----S--SSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred             CeEEEEEECCCCHHHHHHcCCC----c--cCEEEEE-eCCEEEEEEcCCC----CHHHHHHHHHHh
Confidence            3444433 45678899999987    3  6999999 8999998887643    577888877664

>2dlx_A UBX domain-containing protein 7; UAS domain, protein KIAA0794, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: c.47.1.24

Probab=95.91  E-value=0.02  Score=38.28  Aligned_cols=58  Identities=21%  Similarity=0.122  Sum_probs=40.5

Q ss_pred             chHHhhhCCccccCCccceeEEEECCC-CCEEEEEeccCCCCCCHHHHHHHHHhhhhh--hhcCCcccCCCC
Q psy13875         35 KEIATSYGVLIESAGIPLRGLFIIDTK-GVLRQITVNDLPVGRSVEEVLRLVKAFQFV--DKHGEGSKRVPS  103 (105)
Q Consensus        35 ~~vak~ygv~~~~~G~~~ratfiID~~-G~V~~~~~~~~~~~~~~~eil~~l~~l~~~--~~~~~~~~~~~~  103 (105)
                      ..+++.|++.    |  .|+.++||++ |+.+..+.     +.+.+++++.|++....  ...|+++++.|+
T Consensus        91 ~~l~~~y~v~----~--~P~~~fld~~~G~~l~~~~-----g~~~~~fl~~L~~~l~~~~~~~~~~~~~~~~  151 (153)
T 2dlx_A           91 QRYIQFYKLG----D--FPYVSILDPRTGQKLVEWH-----QLDVSSFLDQVTGFLGEHGQLDGLSSSSGPS  151 (153)
T ss_dssp             HHHHHHHTCC----S--SSEEEEECTTTCCCCEEES-----SCCHHHHHHHHHHHHHHTCSCSSCCCCCSCC
T ss_pred             HHHHHHcCCC----C--CCEEEEEeCCCCcEeeecC-----CCCHHHHHHHHHHHHHhcCCCCCCCCCCCCC
Confidence            4688899986    4  6999999999 86666542     24789999888775422  223566666665

>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A

Probab=95.91  E-value=0.021  Score=33.93  Aligned_cols=53  Identities=17%  Similarity=0.220  Sum_probs=39.3

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +.|-.+ .|.+.++++.||+.    +  .|+.++++ +|+++..+.|.    .+.+++.+.|+++
T Consensus        52 ~~~~~v~~~~~~~~~~~~~v~----~--~Pt~~~~~-~G~~~~~~~g~----~~~~~l~~~l~~~  105 (106)
T 3die_A           52 ADILKLDVDENPSTAAKYEVM----S--IPTLIVFK-DGQPVDKVVGF----QPKENLAEVLDKH  105 (106)
T ss_dssp             CEEEEEETTTCHHHHHHTTCC----S--BSEEEEEE-TTEEEEEEESC----CCHHHHHHHHHTT
T ss_pred             cEEEEEECCcCHHHHHhCCCc----c--cCEEEEEe-CCeEEEEEeCC----CCHHHHHHHHHHh
Confidence            455444 46678999999987    3  68888884 99999888763    3678888887653

>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A

Probab=95.88  E-value=0.02  Score=34.94  Aligned_cols=55  Identities=13%  Similarity=0.237  Sum_probs=41.0

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+++++ ++|+++..+.|..    +.+++.+.|++..
T Consensus        50 ~v~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~-~~G~~v~~~~G~~----~~~~l~~~~~~~~  105 (110)
T 2l6c_A           50 QVAISSVDSEARPELMKELGFE----R--VPTLVFI-RDGKVAKVFSGIM----NPRELQALYASIH  105 (110)
T ss_dssp             TSCEEEEEGGGCHHHHHHTTCC----S--SCEEEEE-ESSSEEEEEESCC----CHHHHHHHHHTC-
T ss_pred             CcEEEEEcCcCCHHHHHHcCCc----c--cCEEEEE-ECCEEEEEEcCCC----CHHHHHHHHHHHh
Confidence            4555443 45678899999987    3  6999999 8999999888643    6778888877654

>4euy_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; 2.90A {Bacillus cereus}

Probab=95.70  E-value=0.023  Score=34.19  Aligned_cols=54  Identities=19%  Similarity=0.167  Sum_probs=32.5

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+..+++.||+.    +  .|+.+++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        49 ~~~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~-~~G~~~~~~~g~~----~~~~l~~~l~~~  103 (105)
T 4euy_A           49 YVEKIEILLQDMQEIAGRYAVF----T--GPTVLLF-YNGKEILRESRFI----SLENLERTIQLF  103 (105)
T ss_dssp             TEEEEEEEECCC---------C----C--CCEEEEE-ETTEEEEEEESSC----CHHHHHHHHHTT
T ss_pred             CceEEEEECCCCHHHHHhcCCC----C--CCEEEEE-eCCeEEEEEeCCc----CHHHHHHHHHHh
Confidence            4454433 56778999999987    3  6999999 5999998887643    688888888764

>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}

Probab=95.70  E-value=0.011  Score=37.62  Aligned_cols=48  Identities=10%  Similarity=0.025  Sum_probs=34.4

Q ss_pred             eCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhhh
Q psy13875         32 DFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQF   90 (105)
Q Consensus        32 D~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~~   90 (105)
                      |.+.+++++||+.    +  .| ||++.++|+++..+.|..    ..+.+.+.++++..
T Consensus        79 d~~~~l~~~~~v~----~--~P-t~~~~~~G~~v~~~~G~~----~~~~~~~~i~~~~~  126 (135)
T 3emx_A           79 SAARLEMNKAGVE----G--TP-TLVFYKEGRIVDKLVGAT----PWSLKVEKAREIYG  126 (135)
T ss_dssp             HHHHHHHHHHTCC----S--SS-EEEEEETTEEEEEEESCC----CHHHHHHHHHHHC-
T ss_pred             hhhHHHHHHcCCc----e--eC-eEEEEcCCEEEEEEeCCC----CHHHHHHHHHHHhC
Confidence            5678999999987    4  58 555556999999988743    45666666666543

>3ul3_B Thioredoxin, thioredoxin-2; PTEX, oxidoreductase; 2.90A {Plasmodium falciparum}

Probab=95.59  E-value=0.02  Score=35.89  Aligned_cols=46  Identities=15%  Similarity=0.252  Sum_probs=36.7

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      .|.+.+++++||+.    |  .|+++++ ++|+++..+.|.    .+.+++.+.|++
T Consensus        82 ~d~~~~l~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~  127 (128)
T 3ul3_B           82 LDKNESLARKFSVK----S--LPTIILL-KNKTMLARKDHF----VSSNDLIALIKK  127 (128)
T ss_dssp             GGGCHHHHHHTTCC----S--SSEEEEE-ETTEEEEEESSC----CCHHHHHHHHTT
T ss_pred             CCCCHHHHHHcCCC----C--cCEEEEE-ECCEEEEEecCC----CCHHHHHHHHHh
Confidence            56678999999987    3  6999999 799999888763    367888877754

>3zzx_A Thioredoxin; oxidoreductase; 1.88A {Litopenaeus vannamei}

Probab=95.55  E-value=0.026  Score=34.88  Aligned_cols=52  Identities=15%  Similarity=0.248  Sum_probs=37.2

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      ++.|--+ .|.+.++++.||+.    |  .|+.+++ ++|+++..+.|     .+.+++.+.|++
T Consensus        51 ~~~~~~vd~d~~~~l~~~~~V~----~--~PT~~~~-~~G~~v~~~~G-----~~~~~l~~~i~k  103 (105)
T 3zzx_A           51 DVVFLKVDVDECEDIAQDNQIA----C--MPTFLFM-KNGQKLDSLSG-----ANYDKLLELVEK  103 (105)
T ss_dssp             TEEEEEEETTTCHHHHHHTTCC----B--SSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHH
T ss_pred             CeEEEEEecccCHHHHHHcCCC----e--ecEEEEE-ECCEEEEEEeC-----cCHHHHHHHHHh
Confidence            3444333 56678999999997    4  5765554 89999998876     367888887765

>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}

Probab=95.48  E-value=0.025  Score=34.17  Aligned_cols=54  Identities=20%  Similarity=0.319  Sum_probs=37.8

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        55 ~~~~~~v~~~~~~~~~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  109 (112)
T 1t00_A           55 KIEIVKLNIDENPGTAAKYGVM----S--IPTLNVY-QGGEVAKTIVGAK----PKAAIVRDLEDF  109 (112)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEESCC----CHHHHHHHTHHH
T ss_pred             CeEEEEEEcCCCHHHHHhCCCC----c--ccEEEEE-eCCEEEEEEeCCC----CHHHHHHHHHHH
Confidence            3444433 45678999999987    4  5765555 8999998887643    567777777654

>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A

Probab=95.47  E-value=0.014  Score=38.75  Aligned_cols=61  Identities=16%  Similarity=0.202  Sum_probs=42.2

Q ss_pred             CCceEE-eeCcch-HHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCC------CCCHHHHHHHHHhhh
Q psy13875         25 LKYPLL-ADFKKE-IATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPV------GRSVEEVLRLVKAFQ   89 (105)
Q Consensus        25 l~fpll-sD~~~~-vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~------~~~~~eil~~l~~l~   89 (105)
                      +.|-.+ .|.+.. +++.|++.    +...|+++++|++|+++..+.+....      ..+.+++++.|+++.
T Consensus        79 ~~~~~v~~d~~~~~~~~~~~~~----~~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~l  147 (164)
T 1sen_A           79 HNFVMVNLEDEEEPKDEDFSPD----GGYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEAQ  147 (164)
T ss_dssp             TTSEEEEEEGGGSCSCGGGCTT----CSCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHHH
T ss_pred             CeEEEEEecCCchHHHHHhccc----CCcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHHH
Confidence            444444 455544 77888764    33579999999999998877764221      257888988887754

>2lst_A Thioredoxin; structural genomics, NEW YORK structural genomics research consortium, oxidoreductase; NMR {Thermus thermophilus}

Probab=94.44  E-value=0.0025  Score=40.00  Aligned_cols=47  Identities=17%  Similarity=0.179  Sum_probs=33.6

Q ss_pred             CcchHHhhhCCccccCCccceeEEEECC-CCCE--EEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         33 FKKEIATSYGVLIESAGIPLRGLFIIDT-KGVL--RQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        33 ~~~~vak~ygv~~~~~G~~~ratfiID~-~G~V--~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      .+..+++.||+.    +  .|+++++|+ +|++  +..+.|..    +.+++.+.|+++.
T Consensus        66 ~~~~~~~~~~v~----~--~Pt~~~~d~~~G~~~~~~~~~G~~----~~~~l~~~l~~~~  115 (130)
T 2lst_A           66 EGQELARRYRVP----G--TPTFVFLVPKAGAWEEVGRLFGSR----PRAEFLKELRQVC  115 (130)
Confidence            446788888886    3  799999996 5998  77776543    4556666776643

>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1

Probab=95.40  E-value=0.026  Score=34.82  Aligned_cols=53  Identities=17%  Similarity=0.226  Sum_probs=37.5

Q ss_pred             CCCceEE-ee-CcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-AD-FKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD-~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|--+ .| .+.+++++||+.    +  .|+ |+++++|+++..+.|.     ..+++.+.|+++
T Consensus        68 ~~~~~~vd~~~~~~~~~~~~~v~----~--~Pt-~~~~~~G~~~~~~~G~-----~~~~l~~~i~~~  122 (124)
T 1faa_A           68 DVIFLKLDCNQENKTLAKELGIR----V--VPT-FKILKENSVVGEVTGA-----KYDKLLEAIQAA  122 (124)
T ss_dssp             TSEEEEEECSSTTHHHHHHHCCS----S--SSE-EEEEETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred             CCEEEEEecCcchHHHHHHcCCC----e--eeE-EEEEeCCcEEEEEcCC-----CHHHHHHHHHHh
Confidence            3454443 23 467899999987    4  576 7777999999888753     367777777764

>1x5e_A Thioredoxin domain containing protein 1; TMX, TXNDC1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.38  E-value=0.035  Score=34.41  Aligned_cols=54  Identities=6%  Similarity=0.175  Sum_probs=38.8

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|-.+ .|.+..+++.||+.    +  .|+++++ ++|++ ..+.|    ..+.+++.++|+++.
T Consensus        55 ~v~~~~vd~~~~~~~~~~~~v~----~--~Pt~~~~-~~G~~-~~~~G----~~~~~~l~~~l~~~~  109 (126)
T 1x5e_A           55 EVNIAKVDVTEQPGLSGRFIIN----A--LPTIYHC-KDGEF-RRYQG----PRTKKDFINFISDKE  109 (126)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCC----S--SSEEEEE-ETTEE-EECCS----CCCHHHHHHHHHTCG
T ss_pred             CeEEEEEECcCCHHHHHHcCCc----c--cCEEEEE-eCCeE-EEeec----CCCHHHHHHHHHHHh
Confidence            3454444 45678899999987    3  6999999 89986 44433    347888999988764

>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*

Probab=95.36  E-value=0.048  Score=33.60  Aligned_cols=53  Identities=11%  Similarity=0.126  Sum_probs=38.6

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|--+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.|.     +.+++.+.|+++
T Consensus        62 ~v~~~~vd~d~~~~l~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~  115 (116)
T 3qfa_C           62 NVIFLEVDVDDCQDVASECEVK----S--MPTFQFF-KKGQKVGEFSGA-----NKEKLEATINEL  115 (116)
T ss_dssp             TSEEEEEETTTTHHHHHHTTCC----S--SSEEEEE-SSSSEEEEEESC-----CHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHHHcCCc----c--ccEEEEE-eCCeEEEEEcCC-----CHHHHHHHHHHh
Confidence            3444433 56678999999987    3  6887777 899999888753     577777777653

>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C

Probab=95.35  E-value=0.044  Score=32.37  Aligned_cols=53  Identities=13%  Similarity=0.261  Sum_probs=37.1

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +.|-.+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        51 ~~~~~v~~~~~~~~~~~~~v~----~--~Pt~~~~-~~g~~~~~~~G~~----~~~~l~~~l~~~  104 (105)
T 1fb6_A           51 IAVYKLNTDEAPGIATQYNIR----S--IPTVLFF-KNGERKESIIGAV----PKSTLTDSIEKY  104 (105)
T ss_dssp             CEEEEEETTTCHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEEECC----CHHHHHHHHHHH
T ss_pred             eEEEEEcCcchHHHHHhCCCC----c--ccEEEEE-eCCeEEEEEecCC----CHHHHHHHHHhh
Confidence            444333 45667899999987    3  5876555 7999998887743    567777777653

>1x5d_A Protein disulfide-isomerase A6; PDIA6, ERP5, TXNDC7, thioredoxin like domain, redox, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=95.35  E-value=0.035  Score=34.44  Aligned_cols=54  Identities=17%  Similarity=0.258  Sum_probs=39.7

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      +.|-.+ .|.+..+++.||+.    +  .|+++++++ |++...+.+.    .+.+++.++|+++.
T Consensus        62 ~~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~~~-g~~~~~~~G~----~~~~~l~~~l~~~~  116 (133)
T 1x5d_A           62 VKLAAVDATVNQVLASRYGIR----G--FPTIKIFQK-GESPVDYDGG----RTRSDIVSRALDLF  116 (133)
T ss_dssp             EEEEEEETTTCCHHHHHHTCC----S--SSEEEEEET-TEEEEEECSC----CSHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCHHHHHhCCCC----e--eCeEEEEeC-CCceEEecCC----CCHHHHHHHHHHHh
Confidence            444333 45568899999987    3  699999987 8877777653    36888888887754

>2ppt_A Thioredoxin-2; thiredoxin, zinc finger, oxidoreductase; 1.92A {Rhodobacter capsulatus}

Probab=95.33  E-value=0.034  Score=36.40  Aligned_cols=55  Identities=9%  Similarity=0.152  Sum_probs=41.1

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|--+ .|.+.+++++||+.      ..|+.+++ ++|+++..+.|..    +.+++.++|+++.
T Consensus        96 ~v~~~~vd~~~~~~l~~~~~i~------~~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~l  151 (155)
T 2ppt_A           96 QVRLAKIDTQAHPAVAGRHRIQ------GIPAFILF-HKGRELARAAGAR----PASELVGFVRGKL  151 (155)
T ss_dssp             TCEEEEEETTTSTHHHHHTTCC------SSSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHHH
T ss_pred             CEEEEEEeCCccHHHHHHcCCC------cCCEEEEE-eCCeEEEEecCCC----CHHHHHHHHHHHh
Confidence            4555444 45678999999987      36999888 7999998887643    6778888887643

>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0

Probab=95.32  E-value=0.04  Score=32.96  Aligned_cols=54  Identities=9%  Similarity=0.223  Sum_probs=40.2

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+..+++.||+.      ..|+.+++ ++|+++..+.|.    .+.+++.+.|+++
T Consensus        54 ~v~~~~vd~~~~~~l~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~~  108 (111)
T 3gnj_A           54 SFGFYYVDVEEEKTLFQRFSLK------GVPQILYF-KDGEYKGKMAGD----VEDDEVEQMIADV  108 (111)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCC------SSCEEEEE-ETTEEEEEEESS----CCHHHHHHHHHHH
T ss_pred             ceEEEEEECCcChhHHHhcCCC------cCCEEEEE-ECCEEEEEEecc----CCHHHHHHHHHHH
Confidence            3555444 46678899999987      36999999 799998888764    3677888887764

>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A

Probab=95.26  E-value=0.032  Score=33.59  Aligned_cols=53  Identities=19%  Similarity=0.251  Sum_probs=37.1

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+ |++.++|+++..+.|.     +.+++.+.|+++
T Consensus        56 ~~~~~~vd~~~~~~~~~~~~v~----~--~Pt-~~~~~~G~~~~~~~G~-----~~~~l~~~l~~~  109 (112)
T 1ep7_A           56 KVIFLKVDVDAVAAVAEAAGIT----A--MPT-FHVYKDGVKADDLVGA-----SQDKLKALVAKH  109 (112)
T ss_dssp             TSEEEEEETTTTHHHHHHHTCC----B--SSE-EEEEETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred             CeEEEEEECCchHHHHHHcCCC----c--ccE-EEEEECCeEEEEEcCC-----CHHHHHHHHHHH
Confidence            3444443 45678999999987    3  576 5555899999888753     567777777664

>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B

Probab=95.23  E-value=0.052  Score=32.99  Aligned_cols=53  Identities=15%  Similarity=0.161  Sum_probs=39.1

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+..+++.||+.    +  .|+.++++ +|+++..+.|.     +.+++.+.|+++
T Consensus        55 ~~~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~~-~G~~~~~~~G~-----~~~~l~~~i~~~  108 (109)
T 3f3q_A           55 QADFYKLDVDELGDVAQKNEVS----A--MPTLLLFK-NGKEVAKVVGA-----NPAAIKQAIAAN  108 (109)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCC----S--SSEEEEEE-TTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHHHcCCC----c--cCEEEEEE-CCEEEEEEeCC-----CHHHHHHHHHhh
Confidence            4555443 56678999999987    4  69888887 99999888763     457777777653

>2dj1_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.12  E-value=0.046  Score=34.30  Aligned_cols=53  Identities=21%  Similarity=0.271  Sum_probs=37.0

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      +.|-.+ .|.+..+++.||+.    +  .|+.+++ ++|+ +..+.+    ..+.+++.++|+++.
T Consensus        70 v~~~~vd~~~~~~~~~~~~v~----~--~Pt~~~~-~~G~-~~~~~g----~~~~~~l~~~l~~~~  123 (140)
T 2dj1_A           70 IAVAKIDATSASMLASKFDVS----G--YPTIKIL-KKGQ-AVDYDG----SRTQEEIVAKVREVS  123 (140)
T ss_dssp             CEEEEECTTTCHHHHHHTTCC----S--SSEEEEE-ETTE-EEECCS----CCCHHHHHHHHHHHH
T ss_pred             eEEEEEeCcccHHHHHHCCCC----c--cCeEEEE-ECCc-EEEcCC----CCCHHHHHHHHHHhc
Confidence            444333 34567899999987    3  6999999 7898 444443    347888888887764

>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}

Probab=95.11  E-value=0.045  Score=34.66  Aligned_cols=55  Identities=18%  Similarity=0.229  Sum_probs=40.0

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|-.+ .|.+..+++.||+.    +  .|+.+++ ++|+++..+.|..    +.+++.++|+++.
T Consensus        82 ~v~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~i~~~l  137 (140)
T 1v98_A           82 RLKVVKVNVDEHPGLAARYGVR----S--VPTLVLF-RRGAPVATWVGAS----PRRVLEERLRPYL  137 (140)
T ss_dssp             TEEEEEEETTTCHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCHHHHHHCCCC----c--cCEEEEE-eCCcEEEEEeCCC----CHHHHHHHHHHHH
Confidence            3455444 45577899999987    3  6888888 7999998887643    5777887777643

>2wz9_A Glutaredoxin-3; protein binding; 1.55A {Homo sapiens} PDB: 2diy_A

Probab=95.05  E-value=0.047  Score=35.35  Aligned_cols=54  Identities=11%  Similarity=0.161  Sum_probs=40.5

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|-.+ .|.+..+++.||+.    +  .|++++++ +|+++..+.|.     +.+++.+.|+++.
T Consensus        63 ~v~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~~-~G~~~~~~~G~-----~~~~l~~~i~~~l  117 (153)
T 2wz9_A           63 QVSFVKLEAEGVPEVSEKYEIS----S--VPTFLFFK-NSQKIDRLDGA-----HAPELTKKVQRHA  117 (153)
T ss_dssp             TSEEEEEETTTSHHHHHHTTCC----S--SSEEEEEE-TTEEEEEEESS-----CHHHHHHHHHHHS
T ss_pred             CeEEEEEECCCCHHHHHHcCCC----C--CCEEEEEE-CCEEEEEEeCC-----CHHHHHHHHHHHh
Confidence            4555544 45677899999987    3  69999999 99998887752     4677888887754

>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.02  E-value=0.026  Score=35.05  Aligned_cols=54  Identities=19%  Similarity=0.211  Sum_probs=38.9

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +.|-.+ .|.+..+++.|++.      ..|++++++++|++...+.+    ..+.++++++|.+.
T Consensus        68 ~~~~~vd~~~~~~l~~~~~v~------~~Pt~~~~~~~~~~~~~~~G----~~~~~~l~~~l~~~  122 (130)
T 2dml_A           68 VKVGAVNADKHQSLGGQYGVQ------GFPTIKIFGANKNKPEDYQG----GRTGEAIVDAALSA  122 (130)
T ss_dssp             SEEEEEETTTCHHHHHHHTCC------SSSEEEEESSCTTSCEECCS----CCSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCHHHHHHcCCC------ccCEEEEEeCCCCeEEEeec----CCCHHHHHHHHHHH
Confidence            444433 45678899999987      36999999999985555554    34678888877654

>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}

Probab=94.96  E-value=0.044  Score=35.00  Aligned_cols=55  Identities=4%  Similarity=0.150  Sum_probs=40.7

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|-.+ .|.+..+++.||+.    +  .|+.+++ ++|+++..+.|.    .+.+++.++|+++.
T Consensus        87 ~~~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~l  142 (148)
T 3p2a_A           87 KVRFVKVNTEAEPALSTRFRIR----S--IPTIMLY-RNGKMIDMLNGA----VPKAPFDNWLDEQL  142 (148)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCC----S--SSEEEEE-ETTEEEEEESSC----CCHHHHHHHHHHHH
T ss_pred             ceEEEEEECcCCHHHHHHCCCC----c--cCEEEEE-ECCeEEEEEeCC----CCHHHHHHHHHHHh
Confidence            4555444 45678999999987    4  6887777 699999887764    36788888887654

>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}

Probab=94.93  E-value=0.047  Score=34.65  Aligned_cols=48  Identities=6%  Similarity=0.137  Sum_probs=35.2

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEE-CCCCC--EEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFII-DTKGV--LRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiI-D~~G~--V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      .|.+..+++.||+.    +  .|+++++ |++|+  ++..+.|.     +.+++.+.|+++.
T Consensus        78 ~~~~~~l~~~~~v~----~--~Pt~~~~~~~~g~g~~~~~~~G~-----~~~~l~~~l~~~l  128 (133)
T 3cxg_A           78 VDIHPKLNDQHNIK----A--LPTFEFYFNLNNEWVLVHTVEGA-----NQNDIEKAFQKYC  128 (133)
T ss_dssp             TTTCHHHHHHTTCC----S--SSEEEEEEEETTEEEEEEEEESC-----CHHHHHHHHHHHS
T ss_pred             ccchHHHHHhcCCC----C--CCEEEEEEecCCCeEEEEEEcCC-----CHHHHHHHHHHHH
Confidence            35567899999987    3  6999998 44555  88887753     4778888887653

>2qsi_A Putative hydrogenase expression/formation protein; HUPG, MCS SAD, structural genomics, protein structure initiative; 1.80A {Rhodopseudomonas palustris}

Probab=94.93  E-value=0.044  Score=36.25  Aligned_cols=55  Identities=13%  Similarity=0.117  Sum_probs=42.4

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|--+ .|.+.+++.+||+.      .+|+.++. ++|+++....|..    +.+++.+.|+++.
T Consensus        67 ~v~~~KVdvDe~~~la~~ygV~------siPTlilF-kdG~~v~~~vG~~----~k~~l~~~l~~~l  122 (137)
T 2qsi_A           67 RLVAAEVAAEAERGLMARFGVA------VCPSLAVV-QPERTLGVIAKIQ----DWSSYLAQIGAML  122 (137)
T ss_dssp             TEEEEEECGGGHHHHHHHHTCC------SSSEEEEE-ECCEEEEEEESCC----CHHHHHHHHHHHH
T ss_pred             CcEEEEEECCCCHHHHHHcCCc------cCCEEEEE-ECCEEEEEEeCCC----CHHHHHHHHHHHh
Confidence            4555544 56778999999998      47999999 8999999998754    5667777776544

>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A

Probab=94.91  E-value=0.049  Score=32.21  Aligned_cols=53  Identities=17%  Similarity=0.226  Sum_probs=35.9

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+ |++.++|+++..+.| .    +.+++.+.|+++
T Consensus        52 ~~~~~~v~~~~~~~~~~~~~v~----~--~Pt-~~~~~~G~~~~~~~g-~----~~~~l~~~i~~~  105 (106)
T 1xwb_A           52 NVVVLKVDVDECEDIAMEYNIS----S--MPT-FVFLKNGVKVEEFAG-A----NAKRLEDVIKAN  105 (106)
T ss_dssp             TEEEEEEETTTCHHHHHHTTCC----S--SSE-EEEEETTEEEEEEES-C----CHHHHHHHHHHT
T ss_pred             CeEEEEEeccchHHHHHHcCCC----c--ccE-EEEEcCCcEEEEEcC-C----CHHHHHHHHHHh
Confidence            3444333 45677899999987    4  577 455589999888875 2    467777777653

>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1

Probab=94.83  E-value=0.058  Score=33.72  Aligned_cols=53  Identities=11%  Similarity=0.273  Sum_probs=36.9

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|--+ .|.+.+++++||+.    +  .|+.+++ ++|+++..+.+ .    +.+++.+.|+++
T Consensus        69 ~v~~~~vd~d~~~~l~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G-~----~~~~l~~~l~~~  122 (124)
T 1xfl_A           69 NVLFLKVDTDELKSVASDWAIQ----A--MPTFMFL-KEGKILDKVVG-A----KKDELQSTIAKH  122 (124)
T ss_dssp             SEEEEEEETTTSHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEES-C----CHHHHHHHHHHH
T ss_pred             CcEEEEEECccCHHHHHHcCCC----c--cCEEEEE-ECCEEEEEEeC-C----CHHHHHHHHHHh
Confidence            3444433 45578999999987    4  5775555 89999988875 2    567777777654

>3d22_A TRXH4, thioredoxin H-type; electron transport, cytoplasm, redox-active center, transport, oxidoreductase; 1.60A {Populus trichocarpa x populusdeltoides} PDB: 3d21_A

Probab=94.81  E-value=0.051  Score=34.22  Aligned_cols=54  Identities=15%  Similarity=0.260  Sum_probs=39.1

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.|.     +.+++.+.|+++.
T Consensus        77 ~v~~~~v~~~~~~~~~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~~  131 (139)
T 3d22_A           77 SLMFLVIDVDELSDFSASWEIK----A--TPTFFFL-RDGQQVDKLVGA-----NKPELHKKITAIL  131 (139)
T ss_dssp             TSEEEEEETTTSHHHHHHTTCC----E--ESEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHHH
T ss_pred             CCEEEEEeCcccHHHHHHcCCC----c--ccEEEEE-cCCeEEEEEeCC-----CHHHHHHHHHHHh
Confidence            4555444 56678999999987    3  6877766 999999988763     4667777776654

>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A

Probab=94.78  E-value=0.06  Score=32.08  Aligned_cols=53  Identities=19%  Similarity=0.327  Sum_probs=37.7

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.|.    .+.+++.++|++
T Consensus        56 ~~~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~-~~g~~~~~~~g~----~~~~~l~~~l~~  109 (111)
T 3uvt_A           56 GVKIAEVDCTAERNICSKYSVR----G--YPTLLLF-RGGKKVSEHSGG----RDLDSLHRFVLS  109 (111)
T ss_dssp             CEEEEEEETTTCHHHHHHTTCC----S--SSEEEEE-ETTEEEEEECSC----CSHHHHHHHHHH
T ss_pred             ceEEEEEeccccHhHHHhcCCC----c--ccEEEEE-eCCcEEEeccCC----cCHHHHHHHHHh
Confidence            3444333 45567899999987    3  6877666 899988877653    378888888765

>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A

Probab=94.51  E-value=0.078  Score=32.62  Aligned_cols=51  Identities=14%  Similarity=0.169  Sum_probs=35.6

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      +.|-.+ .|.+.+++++||+.    +  .|+.+++ ++|+++..+.|.     ..+++.+.|++
T Consensus        62 v~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~  113 (114)
T 2oe3_A           62 VRFVKCDVDESPDIAKECEVT----A--MPTFVLG-KDGQLIGKIIGA-----NPTALEKGIKD  113 (114)
T ss_dssp             SEEEEEETTTCHHHHHHTTCC----S--BSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHT
T ss_pred             CEEEEEECCCCHHHHHHCCCC----c--ccEEEEE-eCCeEEEEEeCC-----CHHHHHHHHHh
Confidence            454443 45567899999987    3  5876555 899999888763     26677777654

>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...

Probab=94.47  E-value=0.086  Score=31.12  Aligned_cols=52  Identities=12%  Similarity=0.107  Sum_probs=38.0

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      ++.|-.+ .|.+..+++.||+.      ..|+.+++ ++|+++..+.|.     +.+++.+.|++
T Consensus        51 ~~~~~~vd~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~-----~~~~l~~~l~~  103 (105)
T 3m9j_A           51 NVIFLEVDVDDCQDVASESEVK------SMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINE  103 (105)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCC------BSSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHH
T ss_pred             CeEEEEEEhhhhHHHHHHcCCC------cCcEEEEE-ECCeEEEEEeCC-----CHHHHHHHHHH
Confidence            4454433 45678999999987      36999999 789988887753     56777777765

>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1

Probab=94.41  E-value=0.073  Score=32.24  Aligned_cols=53  Identities=9%  Similarity=0.203  Sum_probs=37.0

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+..+++.||+.    +  .|+ |++.++|+++..+.|.     +.+++.+.|+++
T Consensus        57 ~v~~~~vd~~~~~~~~~~~~v~----~--~Pt-~~~~~~G~~~~~~~G~-----~~~~l~~~l~~~  110 (112)
T 1syr_A           57 KMVFIKVDVDEVSEVTEKENIT----S--MPT-FKVYKNGSSVDTLLGA-----NDSALKQLIEKY  110 (112)
T ss_dssp             TSEEEEEETTTTHHHHHHTTCC----S--SSE-EEEEETTEEEEEEESC-----CHHHHHHHHHTT
T ss_pred             CCEEEEEECCCCHHHHHHcCCC----c--ccE-EEEEECCcEEEEEeCC-----CHHHHHHHHHHh
Confidence            4555444 44567899999987    4  576 5555799998887652     577888877764

>3gix_A Thioredoxin-like protein 4B; PRE-mRNA splicing, TXNL4B, DLP, cell cycle, mRNA processing, mRNA splicing, nucleus, phosphoprotein, splicing; HET: SUC; 1.33A {Homo sapiens} SCOP: c.47.1.0 PDB: 1xbs_A

Probab=94.40  E-value=0.043  Score=35.71  Aligned_cols=53  Identities=6%  Similarity=0.046  Sum_probs=36.7

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCC------CCCHHHHHHHHHhhhh
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPV------GRSVEEVLRLVKAFQF   90 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~------~~~~~eil~~l~~l~~   90 (105)
                      .|.+.++++.|++.      ..|+++ ++++|+++.+..+....      ..+.+++.+.|+.+-.
T Consensus        63 ~d~~~~l~~~~~v~------~~Pt~~-~~~~G~~v~~~~g~~~~~~~~G~~~~~~~l~~~l~~~~~  121 (149)
T 3gix_A           63 VDQTAVYTQYFDIS------YIPSTV-FFFNGQHMKVDYGSPDHTKFVGSFKTKQDFIDLIEVIYR  121 (149)
T ss_dssp             TTTCCHHHHHTTCC------SSSEEE-EEETTEEEEEECSSSCCSCEESCCSSHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHcCCC------ccCeEE-EEECCeEEEeecCCCCCCeEeeecCCHHHHHHHHHHHHH
Confidence            46788999999987      368888 67899999443332110      2357888888877643

>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}

Probab=94.40  E-value=0.084  Score=33.54  Aligned_cols=54  Identities=15%  Similarity=0.105  Sum_probs=38.9

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      +.|-.+ .|.+..+++.||+.    +  .|+.+++ ++|+++..+.|..    +.+++.++|+++.
T Consensus        57 v~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~l  111 (140)
T 3hz4_A           57 AVFGRINIATNPWTAEKYGVQ----G--TPTFKFF-CHGRPVWEQVGQI----YPSILKNAVRDML  111 (140)
T ss_dssp             SEEEEEETTTCHHHHHHHTCC----E--ESEEEEE-ETTEEEEEEESSC----CHHHHHHHHHHHH
T ss_pred             eEEEEEECCcCHhHHHHCCCC----c--CCEEEEE-eCCcEEEEEcCCC----CHHHHHHHHHHHh
Confidence            555444 46678999999987    3  6866666 8999998887643    5777777776653

>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}

Probab=94.39  E-value=0.1  Score=30.66  Aligned_cols=53  Identities=13%  Similarity=0.229  Sum_probs=36.6

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.| .    +.+++.++|+++
T Consensus        50 ~~~~~~v~~~~~~~~~~~~~v~----~--~Pt~~~~-~~g~~~~~~~G-~----~~~~l~~~l~~~  103 (104)
T 2vim_A           50 EVEFAKVDVDQNEEAAAKYSVT----A--MPTFVFI-KDGKEVDRFSG-A----NETKLRETITRH  103 (104)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEES-S----CHHHHHHHHHHH
T ss_pred             CCEEEEEeccCCHHHHHHcCCc----c--ccEEEEE-eCCcEEEEEeC-C----CHHHHHHHHHhh
Confidence            4455444 45567899999987    3  5876555 69999888875 2    567777777653

>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A

Probab=94.35  E-value=0.089  Score=32.03  Aligned_cols=53  Identities=23%  Similarity=0.308  Sum_probs=35.6

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.| .    +.+++.+.|+++
T Consensus        63 ~~~~~~vd~~~~~~~~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G-~----~~~~l~~~l~~~  116 (117)
T 2xc2_A           63 DAIFVKVDVDKLEETARKYNIS----A--MPTFIAI-KNGEKVGDVVG-A----SIAKVEDMIKKF  116 (117)
T ss_dssp             SSEEEEEETTTSHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEES-S----CHHHHHHHHHHH
T ss_pred             CcEEEEEECCccHHHHHHcCCC----c--cceEEEE-eCCcEEEEEeC-C----CHHHHHHHHHHh
Confidence            3444333 35567899999987    4  5875554 89999988875 2    466777777653

>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A

Probab=94.27  E-value=0.068  Score=32.49  Aligned_cols=54  Identities=22%  Similarity=0.295  Sum_probs=38.7

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.|..    +.+++.+.|+++
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~i~----~--~Pt~~~~-~~g~~~~~~~G~~----~~~~l~~~l~~~  116 (121)
T 2i1u_A           62 DLTVAKLDVDTNPETARNFQVV----S--IPTLILF-KDGQPVKRIVGAK----GKAALLRELSDV  116 (121)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEESCC----CHHHHHHHTCSC
T ss_pred             CeEEEEEECCCCHHHHHhcCCC----c--CCEEEEE-ECCEEEEEecCCC----CHHHHHHHHHHH
Confidence            3455444 45678899999987    3  6887777 6999988887643    577787777654

>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*

Probab=94.22  E-value=0.098  Score=31.94  Aligned_cols=53  Identities=19%  Similarity=0.212  Sum_probs=36.6

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+. ++.++|+++..+.|.    . .+++.+.|+++
T Consensus        65 ~~~~~~vd~~~~~~~~~~~~v~----~--~Pt~-~~~~~G~~~~~~~G~----~-~~~l~~~l~~~  118 (122)
T 2vlu_A           65 NAVFLKVDVDELKPIAEQFSVE----A--MPTF-LFMKEGDVKDRVVGA----I-KEELTAKVGLH  118 (122)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCC----S--SSEE-EEEETTEEEEEEESS----C-HHHHHHHHHHH
T ss_pred             CcEEEEEECCCCHHHHHHcCCC----c--ccEE-EEEeCCEEEEEEeCc----C-HHHHHHHHHHH
Confidence            3454443 45678899999987    4  5764 455899999888753    2 66777777664

>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}

Probab=94.20  E-value=0.096  Score=32.35  Aligned_cols=52  Identities=12%  Similarity=0.205  Sum_probs=37.5

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +.|-.+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.|.     +.+++.++|+++
T Consensus        67 v~~~~vd~d~~~~~~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~  119 (121)
T 2j23_A           67 VGFYKVDVDEQSQIAQEVGIR----A--MPTFVFF-KNGQKIDTVVGA-----DPSKLQAAITQH  119 (121)
T ss_dssp             SEEEEEETTTCHHHHHHHTCC----S--SSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred             EEEEEEECcCCHHHHHHcCCC----c--ccEEEEE-ECCeEEeeEcCC-----CHHHHHHHHHHh
Confidence            444433 45677899999987    3  6887777 699999887753     567777777664

>1r26_A Thioredoxin; redox-active disulfide, electron transport; 1.40A {Trypanosoma} SCOP: c.47.1.1

Probab=94.07  E-value=0.1  Score=32.71  Aligned_cols=54  Identities=19%  Similarity=0.252  Sum_probs=38.2

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.| .    +.+++.+.|+++.
T Consensus        68 ~v~~~~vd~d~~~~l~~~~~v~----~--~Pt~~i~-~~G~~~~~~~G-~----~~~~l~~~l~~~l  122 (125)
T 1r26_A           68 TVKFAKVDADNNSEIVSKCRVL----Q--LPTFIIA-RSGKMLGHVIG-A----NPGMLRQKLRDII  122 (125)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEES-S----CHHHHHHHHHHHH
T ss_pred             CCEEEEEECCCCHHHHHHcCCC----c--ccEEEEE-eCCeEEEEEeC-C----CHHHHHHHHHHHh
Confidence            4555444 45678899999987    3  5875555 89999888875 2    5677888777653

>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A

Probab=93.91  E-value=0.13  Score=30.94  Aligned_cols=54  Identities=17%  Similarity=0.227  Sum_probs=38.2

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|-.+ .|.+..+++.||+.    +  .|+.+++ ++|+++..+.| .    +.+++.+.|+++.
T Consensus        59 ~~~~~~v~~~~~~~~~~~~~v~----~--~Pt~~~~-~~g~~~~~~~g-~----~~~~l~~~l~~~~  113 (118)
T 2vm1_A           59 GAIFLKVDVDELKDVAEAYNVE----A--MPTFLFI-KDGEKVDSVVG-G----RKDDIHTKIVALM  113 (118)
T ss_dssp             TSEEEEEETTTSHHHHHHTTCC----S--BSEEEEE-ETTEEEEEEES-C----CHHHHHHHHHHHH
T ss_pred             CcEEEEEEcccCHHHHHHcCCC----c--CcEEEEE-eCCeEEEEecC-C----CHHHHHHHHHHHh
Confidence            4455444 45678899999987    3  5876666 89999887775 2    5677777777653

>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}

Probab=93.87  E-value=0.12  Score=31.08  Aligned_cols=54  Identities=19%  Similarity=0.310  Sum_probs=37.8

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|--+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.|.     ..+++.+.|+++.
T Consensus        54 ~~~~~~vd~~~~~~~~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~~~  108 (112)
T 3d6i_A           54 NVSFLSIDADENSEISELFEIS----A--VPYFIII-HKGTILKELSGA-----DPKEYVSLLEDCK  108 (112)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCC----S--SSEEEEE-ETTEEEEEECSC-----CHHHHHHHHHHHH
T ss_pred             CEEEEEEecccCHHHHHHcCCC----c--ccEEEEE-ECCEEEEEecCC-----CHHHHHHHHHHHH
Confidence            4455444 45578899999987    3  6887777 799999888753     3456777776643

>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1

Probab=93.71  E-value=0.064  Score=32.15  Aligned_cols=53  Identities=19%  Similarity=0.286  Sum_probs=36.1

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+..+++.||+.    +  .|+.+++ ++|+++..+.| .    +.+++.+.|+++
T Consensus        57 ~v~~~~v~~~~~~~~~~~~~v~----~--~Pt~~~~-~~G~~~~~~~g-~----~~~~l~~~l~~~  110 (113)
T 1ti3_A           57 NVTFLKVDVDELKAVAEEWNVE----A--MPTFIFL-KDGKLVDKTVG-A----DKDGLPTLVAKH  110 (113)
T ss_dssp             SEEEEEEETTTCHHHHHHHHCS----S--TTEEEEE-ETTEEEEEEEC-C----CTTHHHHHHHHH
T ss_pred             CcEEEEEEccccHHHHHhCCCC----c--ccEEEEE-eCCEEEEEEec-C----CHHHHHHHHHHh
Confidence            3454444 45667899999987    3  5877777 79999988876 3    344566666554

>1gh2_A Thioredoxin-like protein; redox-active center, electron transport; 2.22A {Homo sapiens} SCOP: c.47.1.1

Probab=93.69  E-value=0.15  Score=30.40  Aligned_cols=52  Identities=6%  Similarity=-0.040  Sum_probs=36.0

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+.+++ ++|+++..+.|.     +.+++.+.|++
T Consensus        52 ~~~~~~vd~~~~~~~~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~-----~~~~l~~~l~~  104 (107)
T 1gh2_A           52 QAVFLEVDVHQCQGTAATNNIS----A--TPTFQFF-RNKVRIDQYQGA-----DAVGLEEKIKQ  104 (107)
T ss_dssp             TSEEEEEETTTSHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHH
T ss_pred             CcEEEEEECccCHHHHHhcCCC----c--ccEEEEE-ECCeEEEEEeCC-----CHHHHHHHHHH
Confidence            4455444 45678899999987    3  6877777 899998887762     34556666654

>2f51_A Thioredoxin; electron transport; 1.90A {Trichomonas vaginalis}

Probab=93.58  E-value=0.082  Score=32.66  Aligned_cols=56  Identities=20%  Similarity=0.316  Sum_probs=40.0

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECC---CCCEEEEEeccCCCCCCHHHHHHHHHhhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDT---KGVLRQITVNDLPVGRSVEEVLRLVKAFQF   90 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~---~G~V~~~~~~~~~~~~~~~eil~~l~~l~~   90 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+.++++.   +|+++..+.|.     ..+++.+.+++...
T Consensus        54 ~v~~~~vd~~~~~~~~~~~~i~----~--~Pt~~~~~~~~~~G~~~~~~~G~-----~~~~l~~~~~~~~~  113 (118)
T 2f51_A           54 DVTFIKVDVDKNGNAADAYGVS----S--IPALFFVKKEGNEIKTLDQFVGA-----DVSRIKADIEKFKH  113 (118)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCC----S--SSEEEEEEEETTEEEEEEEEESC-----CHHHHHHHHHHHC-
T ss_pred             CeEEEEEECCCCHHHHHhcCCC----C--CCEEEEEeCCCCcceEEEeecCC-----CHHHHHHHHHHhhh
Confidence            4555544 45678899999987    3  699999976   49999988864     35567777766543

>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}

Probab=92.59  E-value=0.013  Score=34.55  Aligned_cols=46  Identities=17%  Similarity=0.286  Sum_probs=32.5

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      .|.+.++++.||+.      ..|+.+++ ++|+++..+.|..    +.+++.+.|++
T Consensus        59 ~~~~~~~~~~~~v~------~~Pt~~~~-~~g~~~~~~~g~~----~~~~l~~~l~~  104 (106)
T 2yj7_A           59 VDENPNTAAQYGIR------SIPTLLLF-KNGQVVDRLVGAQ----PKEALKERIDK  104 (106)
Confidence            45667888889886      36999999 8999988776533    34555555543

>3ira_A Conserved protein; methanosarcina mazei,structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 2.10A {Methanosarcina mazei}

Probab=93.45  E-value=0.24  Score=33.64  Aligned_cols=50  Identities=14%  Similarity=-0.001  Sum_probs=33.8

Q ss_pred             CcchHHhhh--------CCccccCCccceeEEEECCCCCEEEEEeccCC----CCCCHHHHHHHHHhh
Q psy13875         33 FKKEIATSY--------GVLIESAGIPLRGLFIIDTKGVLRQITVNDLP----VGRSVEEVLRLVKAF   88 (105)
Q Consensus        33 ~~~~vak~y--------gv~~~~~G~~~ratfiID~~G~V~~~~~~~~~----~~~~~~eil~~l~~l   88 (105)
                      .+.++++.|        |+.    |  .|+++++|++|++++.-.+-..    ......++|+.+..+
T Consensus        84 e~~~l~~~y~~~~q~~~gv~----g--~Pt~v~l~~dG~~v~~~ty~p~~~~~~~~~f~~~L~~v~~~  145 (173)
T 3ira_A           84 ERPDIDNIYMTVCQIILGRG----G--WPLNIIMTPGKKPFFAGTYIPKNTRFNQIGMLELVPRIKEI  145 (173)
T ss_dssp             TCHHHHHHHHHHHHHHHSCC----C--SSEEEEECTTSCEEEEESSCCSSCBTTBCCHHHHHHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHcCCC----C--CcceeeECCCCCceeeeeeCCCCcCCCCCCHHHHHHHHHHH
Confidence            346788888        765    4  6999999999999987432111    123577777766543

>3ph9_A Anterior gradient protein 3 homolog; thioredoxin fold, protein disulfide isomerase, endoplasmic R isomerase; 1.83A {Homo sapiens} SCOP: c.47.1.0 PDB: 2lns_A 2lnt_A

Probab=93.43  E-value=0.03  Score=37.25  Aligned_cols=48  Identities=10%  Similarity=0.036  Sum_probs=33.2

Q ss_pred             chHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCC------CCCHHHHHHHHHhh
Q psy13875         35 KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPV------GRSVEEVLRLVKAF   88 (105)
Q Consensus        35 ~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~------~~~~~eil~~l~~l   88 (105)
                      ..++..|++.    |  .|+++++|++|+++....|....      ..+.+++++.+++.
T Consensus        90 ~~~~~~~~v~----~--~PT~~f~~~~G~~v~~~~G~~~~~~~~~~~~~~~~ll~~~~~a  143 (151)
T 3ph9_A           90 TDKNLSPDGQ----Y--VPRIMFVDPSLTVRADIAGRYSNRLYTYEPRDLPLLIENMKKA  143 (151)
T ss_dssp             SCGGGCTTCC----C--SSEEEEECTTSCBCTTCCCSCTTSTTCCCGGGHHHHHHHHHHH
T ss_pred             hhhHhhcCCC----C--CCEEEEECCCCCEEEEEeCCcCCcccccchhhHHHHHHHHHHH
Confidence            4567777764    3  69999999999999988875211      13466666666543

>1nho_A Probable thioredoxin; beta sheet, alpha helix, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.47.1.1

Probab=93.26  E-value=0.16  Score=28.74  Aligned_cols=50  Identities=22%  Similarity=0.339  Sum_probs=33.5

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+.+++++||+.    +  .|++++   +|++  .+.|..    +.+++.+.|+++
T Consensus        33 ~~~~~~vd~~~~~~~~~~~~v~----~--~Pt~~~---~G~~--~~~G~~----~~~~l~~~l~~~   83 (85)
T 1nho_A           33 KIDVEKIDIMVDREKAIEYGLM----A--VPAIAI---NGVV--RFVGAP----SREELFEAINDE   83 (85)
T ss_dssp             SCCEEEECTTTCGGGGGGTCSS----C--SSEEEE---TTTE--EEECSS----CCHHHHHHHHHH
T ss_pred             CeEEEEEECCCCHHHHHhCCce----e--eCEEEE---CCEE--EEccCC----CHHHHHHHHHHH
Confidence            4555544 45677899999987    3  688877   8988  455532    456777776553

>3h79_A Thioredoxin-like protein; thioredoxin fold, catalytic cysteines missing, unknown funct; 1.50A {Trypanosoma cruzi} SCOP: c.47.1.0

Probab=93.26  E-value=0.084  Score=32.78  Aligned_cols=54  Identities=9%  Similarity=-0.047  Sum_probs=38.0

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEE-EEEeccCCCCCCHHHHHHHHHhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLR-QITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~-~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +.|--+ .|.+.++++.|++.    +  .|+.+++++.+++. ..+.|    .++.++++++|+++
T Consensus        71 v~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~~~g~~~~~~~~~G----~~~~~~l~~~i~~~  126 (127)
T 3h79_A           71 FVAARIDGEKYPDVIERMRVS----G--FPTMRYYTRIDKQEPFEYSG----QRYLSLVDSFVFQN  126 (127)
T ss_dssp             EEEEEEETTTCHHHHHHTTCC----S--SSEEEEECSSCSSSCEECCS----CCCHHHHHHHHHHH
T ss_pred             eEEEEEEccccHhHHHhcCCc----c--CCEEEEEeCCCCCCceEecC----CccHHHHHHHHHhc
Confidence            444433 45677999999987    3  69999998777754 23333    35889999888764

>2dbc_A PDCL2, unnamed protein product; phosducin-like protein, thioredoxin_FOLD, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=93.20  E-value=0.21  Score=31.63  Aligned_cols=58  Identities=16%  Similarity=0.168  Sum_probs=36.3

Q ss_pred             hhhCCccccCCccceeEEEECCCCCEEEEEeccCCCC---CCHHHHHHHHHhhhhhhhcCCcccCCCC
Q psy13875         39 TSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVG---RSVEEVLRLVKAFQFVDKHGEGSKRVPS  103 (105)
Q Consensus        39 k~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~---~~~~eil~~l~~l~~~~~~~~~~~~~~~  103 (105)
                      +.|++.      ..|+.++++ +|+++..+.+....+   ...+++.+.|++........+..+.+.|
T Consensus        74 ~~~~i~------~~Pt~~~~~-~G~~v~~~~G~~~~~~~~~~~~~l~~~l~~~~~i~~~~~~~~~~~~  134 (135)
T 2dbc_A           74 EHYHDN------CLPTIFVYK-NGQIEGKFIGIIECGGINLKLEELEWKLSEVGAIQSDLEENSGPSS  134 (135)
T ss_dssp             SSCCSS------CCSEEEEES-SSSCSEEEESTTTTTCTTCCHHHHHHHHHHHTSSCCCSCCCSCSSC
T ss_pred             ccCCCC------CCCEEEEEE-CCEEEEEEEeEEeeCCCcCCHHHHHHHHHHcCCccccccCCCCCCC
Confidence            566665      369988885 999999988764322   2577777777765443333333333333

>3apq_A DNAJ homolog subfamily C member 10; thioredoxin fold, DNAJ domain, endoplasmic reticulum, oxidor; 1.84A {Mus musculus}

Probab=93.03  E-value=0.11  Score=35.28  Aligned_cols=55  Identities=20%  Similarity=0.216  Sum_probs=40.6

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      .+.|-.+ .|.+..+++.||+.    +  .|+.+++ ++|+++..+.|.    .+.+++.++|+++.
T Consensus       146 ~v~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~i~~~l  201 (210)
T 3apq_A          146 LLRIGAVNCGDDRMLCRMKGVN----S--YPSLFIF-RSGMAAVKYNGD----RSKESLVAFAMQHV  201 (210)
T ss_dssp             TBEEEEEETTTCHHHHHHTTCC----S--SSEEEEE-CTTSCCEECCSC----CCHHHHHHHHHHHH
T ss_pred             ceEEEEEECCccHHHHHHcCCC----c--CCeEEEE-ECCCceeEecCC----CCHHHHHHHHHHhC
Confidence            3555444 45678899999987    4  6988888 999987776653    46888888887654

>1zma_A Bacterocin transport accessory protein; alpha-beta-alpha-sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.25A {Streptococcus pneumoniae} SCOP: c.47.1.1

Probab=92.83  E-value=0.094  Score=32.04  Aligned_cols=41  Identities=20%  Similarity=0.340  Sum_probs=30.2

Q ss_pred             chHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875         35 KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK   86 (105)
Q Consensus        35 ~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~   86 (105)
                      ..+++.||+.    |  .|+++++ ++|+++..+.|.    .+.+++.++|+
T Consensus        77 ~~~~~~~~i~----~--~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~  117 (118)
T 1zma_A           77 QAFRSRYGIP----T--VPGFVHI-TDGQINVRCDSS----MSAQEIKDFAG  117 (118)
T ss_dssp             HHHHHHHTCC----S--SCEEEEE-ETTEEEEECCTT----CCHHHHHHHHT
T ss_pred             HHHHHHcCCC----C--CCeEEEE-ECCEEEEEecCC----CCHHHHHHHhh
Confidence            4788999987    3  6999888 589988766653    35677777664

>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2

Probab=92.77  E-value=0.067  Score=32.18  Aligned_cols=54  Identities=19%  Similarity=0.353  Sum_probs=37.0

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEE--EEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLR--QITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~--~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      +.|--+ .|.+..+++.||+.    +  .|+.+++ ++|+++  ..+.|    ..+.+++.++|+++.
T Consensus        60 v~~~~vd~~~~~~~~~~~~v~----~--~Pt~~~~-~~g~~~~~~~~~g----~~~~~~l~~~l~~~~  116 (120)
T 1mek_A           60 IRLAKVDATEESDLAQQYGVR----G--YPTIKFF-RNGDTASPKEYTA----GREADDIVNWLKKRT  116 (120)
T ss_dssp             CBCEEEETTTCCSSHHHHTCC----S--SSEEEEE-ESSCSSSCEECCC----CSSHHHHHHHHHTTS
T ss_pred             EEEEEEcCCCCHHHHHHCCCC----c--ccEEEEE-eCCCcCCcccccC----ccCHHHHHHHHHhcc
Confidence            444333 33457899999987    3  6999999 688765  54444    347888888887643

>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}

Probab=92.49  E-value=0.2  Score=34.70  Aligned_cols=57  Identities=9%  Similarity=0.177  Sum_probs=41.7

Q ss_pred             CCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         23 GDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        23 ~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ..+.+..+.|.+..+++.||+.    +  .|+.++++++|++......    ....+.+-..|+.|.
T Consensus       183 ~~i~v~~~~~~~~~l~~~f~v~----~--~Pslvl~~~~g~~~~~~~~----~~~r~~~~~~l~~~~  239 (244)
T 3q6o_A          183 KGVAVRRVLNTEANVVRKFGVT----D--FPSCYLLFRNGSVSRVPVL----MESRSFYTAYLQRLS  239 (244)
T ss_dssp             TTEEEEEEETTCHHHHHHHTCC----C--SSEEEEEETTSCEEECCCS----SSSHHHHHHHHHTC-
T ss_pred             CceEEEEEeCchHHHHHHcCCC----C--CCeEEEEeCCCCeEeeccc----cccHHHHHHHHHhCC
Confidence            3567888888889999999987    3  6999999999999876642    224455555566554

>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}

Probab=92.41  E-value=0.26  Score=33.83  Aligned_cols=54  Identities=22%  Similarity=0.318  Sum_probs=39.6

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      +.|-.+ .|.+..+++.||+.    +  .|+.+++ ++|+++..+.|.    .+.+++.+.|+++.
T Consensus        63 v~~~~vd~d~~~~l~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~----~~~~~l~~~l~~~l  117 (222)
T 3dxb_A           63 LTVAKLNIDQNPGTAPKYGIR----G--IPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDANL  117 (222)
T ss_dssp             CEEEEEETTTCTTTGGGGTCC----S--BSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHHHS
T ss_pred             cEEEEEECCCCHHHHHHcCCC----c--CCEEEEE-ECCeEEEEeccc----cChHHHHHHHHhhc
Confidence            444433 46678999999987    4  6887777 599999888764    36788888887654

>1qgv_A Spliceosomal protein U5-15KD; snRNP, thioredoxin, transcription; 1.40A {Homo sapiens} SCOP: c.47.1.8 PDB: 1syx_A 1pqn_A

Probab=91.87  E-value=0.4  Score=30.71  Aligned_cols=59  Identities=7%  Similarity=0.025  Sum_probs=38.5

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCC------CCCCHHHHHHHHHhhhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLP------VGRSVEEVLRLVKAFQF   90 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~------~~~~~~eil~~l~~l~~   90 (105)
                      +.|--+ .|.+.++++.||+.      ..|+++++ ++|+++....+...      ...+.+++++.|+++..
T Consensus        56 v~~~~vd~d~~~~~~~~~~i~------~~Pt~~~~-~~G~~v~~~~g~~~~~~~~g~~~~~~~l~~~i~~~~~  121 (142)
T 1qgv_A           56 AVIYLVDITEVPDFNKMYELY------DPCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYR  121 (142)
T ss_dssp             EEEEEEETTTCCTTTTSSCSC------SSCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHH
T ss_pred             eEEEEEccccCHHHHHHcCCC------CCCEEEEE-ECCcEEEEecCCCCcceeeeecCcHHHHHHHHHHHHH
Confidence            444333 45667899999987      36999888 58888876654211      11247888888887643

>1a8l_A Protein disulfide oxidoreductase; PDI, thioredoxin fold; 1.90A {Pyrococcus furiosus} SCOP: c.47.1.2 c.47.1.2 PDB: 1j08_A

Probab=91.80  E-value=0.26  Score=33.36  Aligned_cols=54  Identities=17%  Similarity=0.087  Sum_probs=38.1

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+..+++.||+.    |  .|+.+++ ++|++...+.|..    +.+++.++|+++
T Consensus       170 ~v~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~l~~~  224 (226)
T 1a8l_A          170 KILGDMVEAIEYPEWADQYNVM----A--VPKIVIQ-VNGEDRVEFEGAY----PEKMFLEKLLSA  224 (226)
T ss_dssp             CEEEEEEEGGGCHHHHHHTTCC----S--SCEEEEE-ETTEEEEEEESCC----CHHHHHHHHHHH
T ss_pred             cEEEEEEEcccCHHHHHhCCCc----c--cCeEEEE-eCCceeEEEcCCC----CHHHHHHHHHHh
Confidence            4455444 45667899999987    4  6886665 7999988887643    567787777654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=91.51  E-value=0.3  Score=34.33  Aligned_cols=52  Identities=15%  Similarity=0.237  Sum_probs=37.4

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      +.|--+ .|.+.++++.||+.    |  .|+++++ ++|+++..+.|..    +.+.+.+.++.
T Consensus        59 ~~~~~vd~~~~~~~~~~~~v~----~--~Pt~~~~-~~G~~~~~~~g~~----~~~~l~~~l~~  111 (287)
T 3qou_A           59 FILAKLDCDAEQMIAAQFGLR----A--IPTVYLF-QNGQPVDGFQGPQ----PEEAIRALLDX  111 (287)
T ss_dssp             SEEEEEETTTCHHHHHTTTCC----S--SSEEEEE-ETTEEEEEEESCC----CHHHHHHHHHH
T ss_pred             eEEEEEeCccCHHHHHHcCCC----C--CCeEEEE-ECCEEEEEeeCCC----CHHHHHHHHHH
Confidence            455444 46678999999987    4  6999888 7999998887643    45556555544

>3aps_A DNAJ homolog subfamily C member 10; thioredoxin fold, CXXC motif, endoplasmic reticulum, oxidore; 1.90A {Mus musculus}

Probab=90.86  E-value=0.091  Score=32.11  Aligned_cols=59  Identities=5%  Similarity=0.028  Sum_probs=39.2

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+.++++.+|.+ ..+.|......+.+++.+.|+++.
T Consensus        53 ~~~~~~vd~~~~~~~~~~~~v~----~--~Pt~~~~~~~~~~-~~~~g~~~~~~~~~~l~~~l~~~l  112 (122)
T 3aps_A           53 KVRAGKVDCQAYPQTCQKAGIK----A--YPSVKLYQYERAK-KSIWEEQINSRDAKTIAALIYGKL  112 (122)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCC----S--SSEEEEEEEEGGG-TEEEEEEECCSCHHHHHHHHHHHH
T ss_pred             CeEEEEEeCcCCHHHHHHcCCC----c--cceEEEEeCCCcc-ceeeccccCcCCHHHHHHHHHHHH
Confidence            3455444 35677899999987    3  6999999888874 334442111247788888887653

>1fo5_A Thioredoxin; disulfide oxidoreductase, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; NMR {Methanocaldococcus jannaschii} SCOP: c.47.1.1

Probab=90.60  E-value=0.19  Score=28.43  Aligned_cols=49  Identities=14%  Similarity=0.289  Sum_probs=32.2

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      ++.|-.+ .|.+.+++++||+.    |  .|+.++   +|++  .+.|.    .+.+++.+.|++
T Consensus        34 ~~~~~~vd~~~~~~~~~~~~v~----~--~Pt~~~---~G~~--~~~G~----~~~~~l~~~l~~   83 (85)
T 1fo5_A           34 AVEVEYINVMENPQKAMEYGIM----A--VPTIVI---NGDV--EFIGA----PTKEALVEAIKK   83 (85)
T ss_dssp             SEEEEEEESSSSCCTTTSTTTC----C--SSEEEE---TTEE--ECCSS----SSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCHHHHHHCCCc----c--cCEEEE---CCEE--eeecC----CCHHHHHHHHHH
Confidence            4455444 45567899999987    3  688777   8887  44442    256777777754

>3dml_A Putative uncharacterized protein; thioredoxin, oxidoreductase, sulfur oxidation, thiol- disulfide oxidoreductase; HET: MSE; 1.90A {Paracoccus denitrificans} PDB: 3d4t_A*

Probab=89.61  E-value=0.57  Score=29.84  Aligned_cols=43  Identities=5%  Similarity=-0.100  Sum_probs=33.8

Q ss_pred             hHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         36 EIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        36 ~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      .++..|++.    |  .|+.++++ +|+.+....|.+    ..++++++|+.+.
T Consensus        67 ~la~~~~V~----g--~PT~i~f~-~G~ev~Ri~G~~----~~~~f~~~L~~~l  109 (116)
T 3dml_A           67 GLELARPVT----F--TPTFVLMA-GDVESGRLEGYP----GEDFFWPMLARLI  109 (116)
T ss_dssp             TCBCSSCCC----S--SSEEEEEE-TTEEEEEEECCC----CHHHHHHHHHHHH
T ss_pred             hHHHHCCCC----C--CCEEEEEE-CCEEEeeecCCC----CHHHHHHHHHHHH
Confidence            677888876    3  69999998 999999888754    5678888887654

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=89.28  E-value=0.53  Score=37.03  Aligned_cols=58  Identities=9%  Similarity=0.216  Sum_probs=41.8

Q ss_pred             CCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhhhh
Q psy13875         24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQFV   91 (105)
Q Consensus        24 ~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~~~   91 (105)
                      ++.+..+.|.+..+++.||+.      ..|+.++++++|++....+. .   ...+.+-..|+.|...
T Consensus       184 ~v~v~~v~~~~~~l~~kfgV~------~~Pslvl~~~nGk~~~~~v~-~---~~r~~~~~~l~~l~~~  241 (519)
T 3t58_A          184 AVAVRRVLNTESDLVNKFGVT------DFPSCYLLLRNGSVSRVPVL-V---ESRSFYTSYLRGLPGL  241 (519)
T ss_dssp             TEEEEEEETTCHHHHHHHTCC------CSSEEEEEETTSCEEECCCS-S---CSHHHHHHHHTTSTTC
T ss_pred             CeeEEEecCchHHHHHHcCCC------CCCeEEEEeCCCceeecccc-c---ccHHHHHHHHHHccCC
Confidence            577888888889999999997      36999999999998766442 1   1234444556665443

>3t58_A Sulfhydryl oxidase 1; oxidoreductase; HET: FAD; 2.40A {Mus musculus} PDB: 3t59_A*

Probab=89.12  E-value=0.77  Score=36.08  Aligned_cols=56  Identities=11%  Similarity=0.211  Sum_probs=41.3

Q ss_pred             CCCceEEe---eCcchHHhhhCCccccCCccceeEEEECC---CCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLLA---DFKKEIATSYGVLIESAGIPLRGLFIIDT---KGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fplls---D~~~~vak~ygv~~~~~G~~~ratfiID~---~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      .+.|--+.   |.+.++++.||+.    |  .|+++++++   +|+++....+    +++.+++.+.|.++.
T Consensus        65 ~v~~~~VD~d~d~~~~l~~~~~V~----~--~PTl~~f~~g~~~G~~~~~~~g----~~~~~~L~~~l~~~l  126 (519)
T 3t58_A           65 ALNLAVLDCAEETNSAVCREFNIA----G--FPTVRFFQAFTKNGSGATLPGA----GANVQTLRMRLIDAL  126 (519)
T ss_dssp             TEEEEEEETTSGGGHHHHHHTTCC----S--BSEEEEECTTCCSCCCEEECCS----SCCHHHHHHHHHHHH
T ss_pred             cEEEEEEECCccccHHHHHHcCCc----c--cCEEEEEcCcccCCCceeEecC----CCCHHHHHHHHHHHH
Confidence            34555543   4578999999997    3  699999997   7876666554    357888888887654

>2dj3_A Protein disulfide-isomerase A4; protein ERP-72, ERP72, CAI, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=86.62  E-value=0.4  Score=29.52  Aligned_cols=49  Identities=10%  Similarity=0.172  Sum_probs=32.3

Q ss_pred             eCcchHHhhhCCccccCCccceeEEEECCCCCEEEE-EeccCCCCCCHHHHHHHHHhhh
Q psy13875         32 DFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQI-TVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        32 D~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~-~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      |.+..+++.|++.      ..|++++++..|++..+ +.+.   ..+.+++.++|+++.
T Consensus        68 ~~~~~~~~~~~v~------~~Pt~~~~~~g~~~~~~~~~gg---~~~~~~l~~~l~~~~  117 (133)
T 2dj3_A           68 TANDITNDQYKVE------GFPTIYFAPSGDKKNPIKFEGG---NRDLEHLSKFIDEHA  117 (133)
T ss_dssp             TTSCCCCSSCCCS------SSSEEEEECTTCTTSCEECCSS---CCSTTHHHHHHHHHS
T ss_pred             CcCHHHHhhcCCC------cCCEEEEEeCCCcccceEecCC---CcCHHHHHHHHHHhc
Confidence            3456777888886      36999999988776543 2211   235667777776653

>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}

Probab=84.38  E-value=1.4  Score=29.78  Aligned_cols=64  Identities=11%  Similarity=0.058  Sum_probs=38.9

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEecc------CCCCCCHHHHHHHHHhhhhhhhcC
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVND------LPVGRSVEEVLRLVKAFQFVDKHG   95 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~------~~~~~~~~eil~~l~~l~~~~~~~   95 (105)
                      +.|-.+ .|.+.+++..||+.      ..|+.++. ++|+.+.+.+|.      ....++-+++.+.|++.......|
T Consensus        74 v~f~kVDVDe~~e~a~~y~V~------siPT~~fF-k~G~~v~vd~Gtgd~~k~vGa~~~k~~l~~~ie~~~r~a~~g  144 (160)
T 2av4_A           74 CVIYLVDITEVPDFNTMYELY------DPVSVMFF-YRNKHMMIDLGTGNNNKINWPMNNKQEFIDIVETIFRGARKG  144 (160)
T ss_dssp             EEEEEEETTTCCTTTTTTTCC------SSEEEEEE-ETTEEEEEECSSSCCSCBCSCCCCHHHHHHHHHHHHHHHHTT
T ss_pred             cEEEEEECCCCHHHHHHcCCC------CCCEEEEE-ECCEEEEEecCCCCcCeEEeecCCHHHHHHHHHHHHHHhhcC
Confidence            444444 46678999999987      46888667 788877533111      111224778888887754333333

>1v58_A Thiol:disulfide interchange protein DSBG; reduced DSBG, redox protein, protein disulfide isomerase, thioredoxin fold; 1.70A {Escherichia coli} SCOP: c.47.1.9 d.17.3.1 PDB: 1v57_A 2h0i_A 2h0h_A 2h0g_A 2iy2_A

Probab=84.33  E-value=0.95  Score=31.64  Aligned_cols=46  Identities=9%  Similarity=0.081  Sum_probs=31.6

Q ss_pred             CcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         33 FKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        33 ~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      .+.++++.||+.    |  .|+.|+.|.+|++ ....|.    .+.+++.+.|++..
T Consensus       187 ~~~~l~~~~gv~----g--tPt~vi~~~~G~~-~~~~G~----~~~~~L~~~l~~~~  232 (241)
T 1v58_A          187 DNEKLMDDLGAN----V--TPAIYYMSKENTL-QQAVGL----PDQKTLNIIMGNKL  232 (241)
T ss_dssp             HHHHHHHHHTCC----S--SCEEEEEETTTEE-EEEESS----CCHHHHHHHTTC--
T ss_pred             HHHHHHHHcCCC----C--CCEEEEECCCCCE-EEecCC----CCHHHHHHHHHHHH
Confidence            345677888887    4  6999998888975 344443    36788888887643

>2djk_A PDI, protein disulfide-isomerase; thioredoxin fold; NMR {Humicola insolens} SCOP: c.47.1.2 PDB: 2kp2_A

Probab=83.57  E-value=2.6  Score=26.24  Aligned_cols=59  Identities=12%  Similarity=0.053  Sum_probs=37.5

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECC-CCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDT-KGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~-~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|-.+ .|.+..++..||+...    .+|+..+++. +|+. +...  .....+.+++.++|+++.
T Consensus        54 k~~f~~vd~d~~~~~a~~~gi~~~----~iPtl~i~~~~~g~~-~~~~--~~g~~~~~~l~~fi~~~l  114 (133)
T 2djk_A           54 VINFGTIDAKAFGAHAGNLNLKTD----KFPAFAIQEVAKNQK-FPFD--QEKEITFEAIKAFVDDFV  114 (133)
T ss_dssp             TSEEEEECTTTTGGGTTTTTCCSS----SSSEEEEECTTTCCB-CCCC--SSSCCCHHHHHHHHHHHH
T ss_pred             eEEEEEEchHHhHHHHHHcCCCcc----cCCEEEEEecCcCcc-cCCC--CccccCHHHHHHHHHHHH
Confidence            5677665 4556789999998721    2699888874 5776 4332  101235677877877643

>2hls_A Protein disulfide oxidoreductase; thioredoxin fold; 1.93A {Aeropyrum pernix}

Probab=83.08  E-value=2  Score=29.87  Aligned_cols=51  Identities=27%  Similarity=0.299  Sum_probs=35.4

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ++.|..+ .|.+..+++.||+.      ..|++|+   +|+++  +.|.    ++.+++++.|+...
T Consensus       174 ~v~~~~vd~~~~~~~~~~~~V~------~vPt~~i---~G~~~--~~G~----~~~~~l~~~l~~~~  225 (243)
T 2hls_A          174 VILSEAVEAYENPDIADKYGVM------SVPSIAI---NGYLV--FVGV----PYEEDFLDYVKSAA  225 (243)
T ss_dssp             CEEEEEEETTTCHHHHHHTTCC------SSSEEEE---TTEEE--EESC----CCHHHHHHHHHHHH
T ss_pred             cEEEEEEECccCHHHHHHcCCe------eeCeEEE---CCEEE--EeCC----CCHHHHHHHHHHHh
Confidence            4555554 33467899999987      3698888   78875  5443    46888888887654

>1sji_A Calsequestrin 2, calsequestrin, cardiac muscle isoform; glycoprotein, calcium-binding, muscle protein, metal binding protein; 2.40A {Canis lupus familiaris} PDB: 2vaf_A

Probab=83.00  E-value=1.6  Score=31.77  Aligned_cols=52  Identities=8%  Similarity=0.143  Sum_probs=37.8

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +.|--+ +|.+.+++++||+.    |  .|+.+++ ++|++ ..+.|    .++.+++.++++..
T Consensus        68 v~~~~Vd~~~~~~l~~~~~v~----~--~Pt~~~~-~~g~~-~~~~G----~~~~~~l~~~i~~~  120 (350)
T 1sji_A           68 IGFVMVDAKKEAKLAKKLGFD----E--EGSLYVL-KGDRT-IEFDG----EFAADVLVEFLLDL  120 (350)
T ss_dssp             EEEEEEETTTTHHHHHHHTCC----S--TTEEEEE-ETTEE-EEECS----CCCHHHHHHHHHTT
T ss_pred             cEEEEEeCCCCHHHHHhcCCC----c--cceEEEE-ECCcE-EEecC----CCCHHHHHHHHHHh
Confidence            455433 56678999999997    4  6999999 78884 34444    35788888888664

>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1

Probab=82.52  E-value=1.4  Score=24.25  Aligned_cols=38  Identities=24%  Similarity=0.426  Sum_probs=26.5

Q ss_pred             cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875         34 KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV   85 (105)
Q Consensus        34 ~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l   85 (105)
                      +.+++++||+.    +  .|++++   +|+++..  |..   ++.+++.+.|
T Consensus        39 ~~~~~~~~~v~----~--~Pt~~~---~G~~~~~--G~~---~~~~~l~~~l   76 (77)
T 1ilo_A           39 EMDQILEAGLT----A--LPGLAV---DGELKIM--GRV---ASKEEIKKIL   76 (77)
T ss_dssp             SHHHHHHHTCS----S--SSCEEE---TTEEEEC--SSC---CCHHHHHHHC
T ss_pred             CHHHHHHCCCC----c--CCEEEE---CCEEEEc--CCC---CCHHHHHHHh
Confidence            77899999987    3  688777   8987654  422   2566666554

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=81.87  E-value=1.7  Score=29.20  Aligned_cols=52  Identities=17%  Similarity=0.184  Sum_probs=36.7

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +.|-.+ .|.+.++++.||+.    +  .|+.++++ +|+++. +.|    .++.++++++|++.
T Consensus       183 v~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~~-~g~~~~-~~g----~~~~~~l~~~l~~~  235 (241)
T 3idv_A          183 IPLAKVDATAETDLAKRFDVS----G--YPTLKIFR-KGRPYD-YNG----PREKYGIVDYMIEQ  235 (241)
T ss_dssp             CCEEEEETTTCHHHHHHTTCC----S--SSEEEEEE-TTEEEE-CCS----CCSHHHHHHHHHHH
T ss_pred             EEEEEEECCCCHHHHHHcCCc----c--cCEEEEEE-CCeEEE-ecC----CCCHHHHHHHHHhh
Confidence            555544 45678999999987    3  68888885 677654 333    45788999888764

>1z6n_A Hypothetical protein PA1234; alpha-beta-alpha sandwich, structura genomics, PSI, protein structure initiative; 1.50A {Pseudomonas aeruginosa} SCOP: c.47.1.1 PDB: 3lef_A

Probab=80.89  E-value=1.2  Score=29.57  Aligned_cols=43  Identities=12%  Similarity=0.107  Sum_probs=29.3

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEe
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITV   69 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~   69 (105)
                      ++.|-.+ .|.+.++++.|+-.   ....+|+++++|.+|+++..+.
T Consensus        85 ~v~~~~v~~d~~~~~~~~~~~~---~v~~iPt~i~~~~~G~~~~~~g  128 (167)
T 1z6n_A           85 NIELAIISKGRAEDDLRQRLAL---ERIAIPLVLVLDEEFNLLGRFV  128 (167)
T ss_dssp             TEEEEEECHHHHHHHTTTTTTC---SSCCSSEEEEECTTCCEEEEEE
T ss_pred             CcEEEEEECCCCHHHHHHHHHc---CCCCcCeEEEECCCCCEEEEEc
Confidence            4555554 34556788888621   0125799999999999987774

>1wmj_A Thioredoxin H-type; structural genomics, program for RICE genome research, oxidoreductase; NMR {Oryza sativa}

Probab=80.66  E-value=0.49  Score=28.85  Aligned_cols=53  Identities=15%  Similarity=0.197  Sum_probs=33.7

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+.++ .++|+++..+.+ .    +.+++.+.|+++
T Consensus        67 ~v~~~~v~~~~~~~~~~~~~v~----~--~Pt~~~-~~~g~~~~~~~g-~----~~~~l~~~l~~~  120 (130)
T 1wmj_A           67 GAVFLKVDVDELKEVAEKYNVE----A--MPTFLF-IKDGAEADKVVG-A----RKDDLQNTIVKH  120 (130)
T ss_dssp             TBCCEECCTTTSGGGHHHHTCC----S--SCCCCB-CTTTTCCBCCCT-T----CTTTHHHHHHHH
T ss_pred             CCEEEEEeccchHHHHHHcCCC----c--cceEEE-EeCCeEEEEEeC-C----CHHHHHHHHHHH
Confidence            3454443 45678899999987    3  576554 489998876654 2    334555556554

>3idv_A Protein disulfide-isomerase A4; thioredoxin-like fold, disulfide bond, endoplasmic reticulum isomerase, redox-active center; 1.95A {Homo sapiens} PDB: 2dj2_A

Probab=80.14  E-value=1.9  Score=29.03  Aligned_cols=53  Identities=21%  Similarity=0.300  Sum_probs=36.4

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      +.|--+ .|.+.++++.||+.    +  .|++++++ +|.++. +.+    .++.+++.+.++.+.
T Consensus        68 ~~~~~vd~~~~~~l~~~~~v~----~--~Pt~~~~~-~g~~~~-~~g----~~~~~~l~~~i~~~~  121 (241)
T 3idv_A           68 IPVAKIDATSASVLASRFDVS----G--YPTIKILK-KGQAVD-YEG----SRTQEEIVAKVREVS  121 (241)
T ss_dssp             CCEEEEETTTCHHHHHHTTCC----S--SSEEEEEE-TTEEEE-CCS----CSCHHHHHHHHHHHH
T ss_pred             eEEEEEeccCCHHHHHhcCCC----c--CCEEEEEc-CCCccc-ccC----cccHHHHHHHHhhcc
Confidence            444433 45678999999987    4  69988885 666552 333    457888888887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	105
d1uula_	194	c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi	4e-26
d1zyea1	158	c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22)	1e-25
d1e2ya_	167	c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxi	1e-25
d1qmva_	197	c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredox	2e-25
d1zofa1	170	c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {He	2e-24
d1we0a1	166	c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase	5e-23
d2h01a1	170	c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thio	1e-19
d2zcta1	237	c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum perni	2e-17
d2bmxa1	169	c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase	6e-17
d1xcca_	219	c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoe	5e-16
d1prxa_	220	c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sa	8e-16
d1n8ja_	186	c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC	2e-15
d2cx4a1	160	c.47.1.10 (A:4-163) Bacterioferritin comigratory p	1e-10
d1xvwa1	153	c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c	6e-10
d2a4va1	156	c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's y	4e-09
d1psqa_	163	c.47.1.10 (A:) Probable thiol peroxidase PsaD {Str	3e-08
d1xvqa_	166	c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium	1e-05
d1hd2a_	161	c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapien	3e-05

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]} Length = 194

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

 Score = 93.7 bits (232), Expect = 4e-26
 Identities = 54/78 (69%), Positives = 59/78 (75%)

Query: 19  DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
            GGLG +  P+LAD  K I  SYGVL E  G+  RGLFIID K  LRQITVNDLPVGR V
Sbjct: 91  RGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDV 150

Query: 79  EEVLRLVKAFQFVDKHGE 96
           +E LRLVKAFQFV+KHGE
Sbjct: 151 DEALRLVKAFQFVEKHGE 168

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]} Length = 158

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 91.8 bits (227), Expect = 1e-25
 Identities = 48/84 (57%), Positives = 63/84 (75%), Gaps = 1/84 (1%)

Query: 9   EVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQIT 68
             W+   ++ +GGLG +   LL+D  K+I+  YGVL+E  G+ LRGLFIID  GV++ ++
Sbjct: 75  LAWINTPRK-NGGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLS 133

Query: 69  VNDLPVGRSVEEVLRLVKAFQFVD 92
           VNDLPVGRSVEE LRLVKAFQFV+
Sbjct: 134 VNDLPVGRSVEETLRLVKAFQFVE 157

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]} Length = 167

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

 Score = 91.5 bits (226), Expect = 1e-25
 Identities = 42/70 (60%), Positives = 55/70 (78%)

Query: 26  KYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV 85
             P+LAD  K IA +YGVL E +G+  RG+FIID  G LRQI +ND+P+GR+VEEV+RLV
Sbjct: 98  AIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRLV 157

Query: 86  KAFQFVDKHG 95
           +A QFV++HG
Sbjct: 158 EALQFVEEHG 167

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]} Length = 197

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 91.8 bits (227), Expect = 2e-25
 Identities = 53/79 (67%), Positives = 61/79 (77%)

Query: 19  DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
           +GGLG L  PLLAD  + ++  YGVL    GI  RGLFIID KGVLRQITVNDLPVGRSV
Sbjct: 92  EGGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSV 151

Query: 79  EEVLRLVKAFQFVDKHGEG 97
           +E LRLV+AFQ+ D+HGE 
Sbjct: 152 DEALRLVQAFQYTDEHGEV 170

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

 Score = 88.8 bits (219), Expect = 2e-24
 Identities = 34/83 (40%), Positives = 51/83 (61%), Gaps = 1/83 (1%)

Query: 14  DVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLP 73
           +     GG+G + +P++AD  K I+  Y VL E   I LRG F+ID    +R   +NDLP
Sbjct: 86  NTPVEKGGIGQVSFPMVADITKSISRDYDVLFE-EAIALRGAFLIDKNMKVRHAVINDLP 144

Query: 74  VGRSVEEVLRLVKAFQFVDKHGE 96
           +GR+ +E+LR+V A    ++HGE
Sbjct: 145 LGRNADEMLRMVDALLHFEEHGE 167

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

 Score = 85.3 bits (210), Expect = 5e-23
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 26  KYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV 85
           +Y ++ D  + I+  + VL E  G+  RG FIID  GV++ I +N   +GR    ++  V
Sbjct: 93  EYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINKV 152

Query: 86  KAFQFVDKH-GE 96
           KA Q+V ++ GE
Sbjct: 153 KAAQYVRENPGE 164

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]} Length = 170

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

 Score = 76.8 bits (188), Expect = 1e-19
 Identities = 34/78 (43%), Positives = 54/78 (69%), Gaps = 1/78 (1%)

Query: 19  DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
            GG+G++K+ L++D  K IA SY VL     + LR   +ID +GV++ + VN+L +GRSV
Sbjct: 85  QGGIGNIKHTLISDISKSIARSYDVLFNE-SVALRAFVLIDKQGVVQHLLVNNLALGRSV 143

Query: 79  EEVLRLVKAFQFVDKHGE 96
           +E+LRL+ A Q  +K+G+
Sbjct: 144 DEILRLIDALQHHEKYGD 161

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]} Length = 237

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

 Score = 71.8 bits (175), Expect = 2e-17
 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%)

Query: 16  KQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGI-PLRGLFIIDTKGVLRQITVNDLPV 74
                    + +P++AD +  +A   G+L   +    +RG+FI+D +GV+R +    + +
Sbjct: 83  WIERHIGVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMEL 142

Query: 75  GRSVEEVLRLVKAFQFVDKHGE 96
           GR V+E+LR+VKA +  D    
Sbjct: 143 GRLVDEILRIVKALKLGDSLKR 164

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]} Length = 169

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 69.3 bits (168), Expect = 6e-17
 Identities = 24/67 (35%), Positives = 41/67 (61%), Gaps = 1/67 (1%)

Query: 23  GDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVL 82
             L +P+L+D K+E++ + GVL    G+  R  FI+D    ++ ++     VGR+V+EVL
Sbjct: 103 KTLPFPMLSDIKRELSQAAGVLNAD-GVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVL 161

Query: 83  RLVKAFQ 89
           R++ A Q
Sbjct: 162 RVLDALQ 168

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 219

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score = 67.9 bits (165), Expect = 5e-16
 Identities = 18/83 (21%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 20  GGLGDLKYPLLADFKKEIATSYGVLIESA------GIPLRGLFIIDTKGVLRQITVNDLP 73
           G L   + P++ D  +E+A    ++ E         +  R LF I  +  ++   +    
Sbjct: 89  GKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPAT 148

Query: 74  VGRSVEEVLRLVKAFQFVDKHGE 96
            GR+  E+LR++K+ Q       
Sbjct: 149 TGRNAHEILRVLKSLQLTYTTPV 171

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]} Length = 220

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.5 bits (164), Expect = 8e-16
 Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 20  GGLGDLKYPLLADFKKEIATSYGVLIESAG------IPLRGLFIIDTKGVLRQITVNDLP 73
                L +P++ D  +E+A   G+L  +        +  R +F+      L+   +    
Sbjct: 89  EPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPAT 148

Query: 74  VGRSVEEVLRLVKAFQFVDKHGE 96
            GR+ +E+LR+V + Q   +   
Sbjct: 149 TGRNFDEILRVVISLQLTAEKRV 171

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

 Score = 66.0 bits (160), Expect = 2e-15
 Identities = 20/76 (26%), Positives = 40/76 (52%)

Query: 19  DGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSV 78
              +  +KY ++ D    +  ++  + E  G+  R  F++D +G+++ I V    +GR  
Sbjct: 85  SETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDA 144

Query: 79  EEVLRLVKAFQFVDKH 94
            ++LR +KA Q+V  H
Sbjct: 145 SDLLRKIKAAQYVAAH 160

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 160

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 53.1 bits (126), Expect = 1e-10
 Identities = 18/72 (25%), Positives = 30/72 (41%), Gaps = 5/72 (6%)

Query: 23  GDLKYPLLADFKKEIATSYGVLIESA----GIPLRGLFIIDTKGVLRQITVNDLPVGR-S 77
             L + LL+D+ +E+   Y V  E       +  R +FI+   G +    V D P+    
Sbjct: 85  NRLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPD 144

Query: 78  VEEVLRLVKAFQ 89
            +EV+R      
Sbjct: 145 YDEVVREANKIA 156

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]} Length = 153

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 50.9 bits (120), Expect = 6e-10
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 2/65 (3%)

Query: 25  LKYPLLADFKK--EIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVL 82
             +PLL+DF     ++ +YGV  E AGI  RG F++D  G++R   +      R      
Sbjct: 86  FTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWT 145

Query: 83  RLVKA 87
             + A
Sbjct: 146 DALAA 150

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.8 bits (115), Expect = 4e-09
 Identities = 14/61 (22%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 31  ADFKKEIATSYGVLIESAGIPLRGLFII-DTKGVLRQITVN-DLPVGRSVEEVLRLVKAF 88
           +D K+E     G         +R  FI  D K   +++ ++ ++ V  + +EVL + + F
Sbjct: 95  SDPKREFIGLLGAKKTPLSGSIRSHFIFVDGKLKFKRVKISPEVSVNDAKKEVLEVAEKF 154

Query: 89  Q 89
           +
Sbjct: 155 K 155

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]} Length = 163

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

 Score = 46.8 bits (110), Expect = 3e-08
 Identities = 13/57 (22%), Positives = 25/57 (43%), Gaps = 1/57 (1%)

Query: 32  DFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQI-TVNDLPVGRSVEEVLRLVKA 87
            F       Y +LI    +  R +F++DT   +R +  V+++    + E  +   KA
Sbjct: 106 YFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEAAIAAAKA 162

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.5 bits (91), Expect = 1e-05
 Identities = 16/72 (22%), Positives = 26/72 (36%), Gaps = 4/72 (5%)

Query: 20  GGLGDLKYPLLADFKKEIATSYGVLIES---AGIPLRGLFIIDTKGVLRQI-TVNDLPVG 75
           G  G       + F+      YGV I     AG+  R + +I   G +     V ++   
Sbjct: 93  GAEGTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQE 152

Query: 76  RSVEEVLRLVKA 87
            + E  L  + A
Sbjct: 153 PNYEAALAALGA 164

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]} Length = 161

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-05
 Identities = 8/67 (11%), Positives = 24/67 (35%), Gaps = 6/67 (8%)

Query: 27  YPLLADFKKEIATSYGVLIESAGIPL------RGLFIIDTKGVLRQITVNDLPVGRSVEE 80
             LLAD          +L++ + + +      +   ++   G+++ + V     G +   
Sbjct: 94  VRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLTCSL 153

Query: 81  VLRLVKA 87
              ++  
Sbjct: 154 APNIISQ 160

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d1uula_	194	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.91
d1n8ja_	186	Alkyl hydroperoxide reductase AhpC {Salmonella typ	99.91
d1qmva_	197	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.9
d1xcca_	219	1-Cys peroxiredoxin {Plasmodium yoelii yoelii [Tax	99.9
d1prxa_	220	1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId:	99.88
d1zofa1	170	Thioredoxin reductase TsaA {Helicobacter pylori [T	99.87
d2zcta1	237	Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}	99.86
d1we0a1	166	Alkyl hydroperoxide reductase AhpC {Amphibacillus	99.85
d1zyea1	158	Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [	99.84
d2h01a1	170	Thioredoxin peroxidase 2 (thioredoxin peroxidase B	99.84
d1e2ya_	167	Tryparedoxin peroxidase (thioredoxin peroxidase ho	99.79
d2bmxa1	169	Alkyl hydroperoxide reductase AhpC {Mycobacterium	99.78
d1xvwa1	153	Putative peroxiredoxin Rv2238c/MT2298 {Mycobacteri	99.59
d2cx4a1	160	Bacterioferritin comigratory protein {Archaeon Aer	99.51
d1psqa_	163	Probable thiol peroxidase PsaD {Streptococcus pneu	99.45
d2a4va1	156	Peroxiredoxin dot5 {Baker's yeast (Saccharomyces c	99.44
d1hd2a_	161	Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606	99.33
d1qxha_	164	Thiol peroxidase Tpx {Escherichia coli [TaxId: 562	99.29
d1xvqa_	166	Thiol peroxidase Tpx {Mycobacterium tuberculosis [	99.29
d1q98a_	164	Thiol peroxidase Tpx {Haemophilus influenzae [TaxI	99.25
d1tp9a1	162	Plant peroxiredoxin {Western balsam poplar(Populus	99.25
d1nm3a2	163	N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus	99.21
d1st9a_	137	Thiol-disulfide oxidoreductase ResA {Bacillus subt	99.1
d2b5xa1	143	thiol:disulfide oxidoreductase YkuV {Bacillus subt	99.09
d1lu4a_	134	Soluble secreted antigen MPT53 {Mycobacterium tube	99.06
d1xiya1	179	1-Cys peroxiredoxin {Malaria parasite (Plasmodium	98.93
d2fy6a1	143	Peptide methionine sulfoxide reductase MsrA/MsrB,	98.9
d1zzoa1	134	Lipoprotein DsbF {Mycobacterium tuberculosis [TaxI	98.85
d1jfua_	176	Membrane-anchored thioredoxin-like protein TlpA, s	98.78
d1z5ye1	136	Thioredoxin-like protein CcmG (CycY, DsbE) {Escher	98.78
d2cvba1	187	Probable thiol-disulfide isomerase/thioredoxin TTH	98.74
d1knga_	144	Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyr	98.72
d1xzoa1	172	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.98
d2b7ka1	169	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.69
d1wp0a1	160	Thioredoxin-like protein Sco1 (YpmQ), soluble doma	97.54
d1a8la2	107	Protein disulfide isomerase, PDI {Archaeon Pyrococ	96.43
d1o73a_	144	Tryparedoxin I {Trypanosoma brucei brucei [TaxId:	96.26
d1i5ga_	144	Tryparedoxin II {Crithidia fasciculata [TaxId: 565	96.25
d1o8xa_	144	Tryparedoxin I {Crithidia fasciculata [TaxId: 5656	96.11
d1dbya_	107	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	95.95
d1thxa_	108	Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}	95.52
d1fb6a_	104	Thioredoxin {Spinach (Spinacia oleracea), thioredo	95.5
d2fwha1	117	Thiol:disulfide interchange protein DsbD, C-termin	95.49
d2es7a1	119	Hydrogenase-1 operon protein HyaE {Salmonella typh	95.36
d2trxa_	108	Thioredoxin {Escherichia coli [TaxId: 562]}	95.29
d2hfda1	132	Hydrogenase-1 operon protein HyaE {Escherichia col	94.93
d1f9ma_	112	Thioredoxin {Spinach (Spinacia oleracea), thioredo	94.68
d1nw2a_	105	Thioredoxin {Alicyclobacillus acidocaldarius, form	94.63
d2ifqa1	105	Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}	93.4
d1xfla_	114	Thioredoxin {Thale cress (Arabidopsis thaliana) [T	93.15
d2f8aa1	184	Glutathione peroxidase {Human (Homo sapiens) [TaxI	93.02
d1xwaa_	111	Thioredoxin {Fruit fly (Drosophila melanogaster) [	92.95
d1fo5a_	85	MJ0307, thioredoxin/glutaredoxin-like protein {Arc	92.82
d1r26a_	113	Thioredoxin {Trypanosoma brucei [TaxId: 5691]}	92.42
d1ep7a_	112	Thioredoxin {Chlamydomonas reinhardtii [TaxId: 305	92.41
d1syra_	103	Thioredoxin {Malarial parasite (Plasmodium falcipa	91.97
d1gh2a_	107	Thioredoxin-like protein, N-terminal domain {Human	91.36
d1ti3a_	113	Thioredoxin {European aspen (Populus tremula), thi	90.43
d2dlxa1	147	UBX domain-containing protein 7 {Human (Homo sapie	88.98
d1nhoa_	85	MTH807, thioredoxin/glutaredoxin-like protein {Arc	88.89
d1hyua4	96	Alkyl hydroperoxide reductase subunit F (AhpF), N-	88.47
d2b5ea4	119	Protein disulfide isomerase, PDI {Baker's yeast (S	88.09
d1zmaa1	115	Bacterocin transport accessory protein Bta {Strept	86.61
d1a8ya1	124	Calsequestrin {Rabbit (Oryctolagus cuniculus) [Tax	84.4
d1qgva_	137	spliceosomal protein U5-15Kd {Human (Homo sapiens)	84.11
d1u07a_	90	TonB {Escherichia coli [TaxId: 562]}	81.49
d2c0ga2	122	Windbeutel, N-terminal domain {Fruit fly (Drosophi	80.68
d1meka_	120	Protein disulfide isomerase, PDI {Human (Homo sapi	80.14

>d1uula_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.91  E-value=2.1e-24  Score=151.12  Aligned_cols=95  Identities=58%  Similarity=0.886  Sum_probs=86.1

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      +++|++|+++.. ..+++.+++||+|||++++|+++||++.+..|++.|+|||||++|+|+++++++...++|++|+|+.
T Consensus        78 ~~s~~~~~~~~~-~~~~~~~l~fpllsD~~~~v~~~ygv~~~~~~~~~R~tfvID~~G~I~~~~~~~~~~~r~~~E~Lr~  156 (194)
T d1uula_          78 EYSHLAWTSIER-KRGGLGQMNIPILADKTKCIMKSYGVLKEEDGVAYRGLFIIDPKQNLRQITVNDLPVGRDVDEALRL  156 (194)
T ss_dssp             HHHHHHHHHSCG-GGTCCCSCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHH
T ss_pred             hhhhhhhhhhhh-hhccccCCCcceeeCCcchHHHHcCCeeccCCceEEEEEEECCCCeEEEEEEecCCCCcCHHHHHHH
Confidence            579999997643 3345668999999999999999999998877899999999999999999999999999999999999


Q ss_pred             HHhhhhhhhcCCcccC
Q psy13875         85 VKAFQFVDKHGEGSKR  100 (105)
Q Consensus        85 l~~l~~~~~~~~~~~~  100 (105)
                      |++||..+++|++||+
T Consensus       157 l~alQ~~~~~~~~cp~  172 (194)
T d1uula_         157 VKAFQFVEKHGEVCPA  172 (194)
T ss_dssp             HHHHHHHHHHSCBBCT
T ss_pred             HHHhhhHhhcCCCcCC
Confidence            9999999999999975

>d1n8ja_ c.47.1.10 (A:) Alkyl hydroperoxide reductase AhpC {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.91  E-value=2.2e-24  Score=150.26  Aligned_cols=93  Identities=25%  Similarity=0.516  Sum_probs=84.3

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      .+++|++|+++.    .++.+++||||||++++++++||+..+..|++.|+|||||++|+|+++++++...++|++|+|+
T Consensus        74 s~~sh~~f~~~~----~~~~~~~fpllsD~~~~v~~~yGv~~~~~g~~~r~tfiID~~G~Ir~~~v~~~~~~r~~~eiL~  149 (186)
T d1n8ja_          74 THFTHKAWHSSS----ETIAKIKYAMIGDPTGALTRNFDNMREDEGLADRATFVVDPQGIIQAIEVTAEGIGRDASDLLR  149 (186)
T ss_dssp             CHHHHHHHHHHC----TTGGGCCSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHH
T ss_pred             CHHHHHHHhccc----cccccccccccccHHHHHHHHhCCCcccCCcceeeEEEECchheEEEEeecCCCcccCHHHHHH
Confidence            468999999763    3344789999999999999999999887788999999999999999999999888999999999


Q ss_pred             HHHhhhhhhhc-CCcccC
Q psy13875         84 LVKAFQFVDKH-GEGSKR  100 (105)
Q Consensus        84 ~l~~l~~~~~~-~~~~~~  100 (105)
                      .|++||..++| |++||+
T Consensus       150 ~lkaLQ~~~~~~g~~~p~  167 (186)
T d1n8ja_         150 KIKAAQYVAAHPGEVCPA  167 (186)
T ss_dssp             HHHHHHHHHHSTTCBBCT
T ss_pred             HHHHHHHHHhcCCeEeCC
Confidence            99999998887 899987

>d1qmva_ c.47.1.10 (A:) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=4.4e-24  Score=149.85  Aligned_cols=97  Identities=56%  Similarity=0.910  Sum_probs=87.5

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      .+++|++|+++..+. .++.+++||||+|.+++|+++||++.+..|++.|+|||||++|+|++++.++++.++|++|+|+
T Consensus        78 ~~~~~~~~~~~~~~~-~~~~~~~fpll~D~~~~va~~ygv~~~~~g~~~R~tfiID~~g~Ir~~~~~~~~~~r~~~E~lr  156 (197)
T d1qmva_          78 SQFTHLAWINTPRKE-GGLGPLNIPLLADVTRRLSEDYGVLKTDEGIAYRGLFIIDGKGVLRQITVNDLPVGRSVDEALR  156 (197)
T ss_dssp             CHHHHHHHHTSCGGG-TCCCSCSSCEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHH
T ss_pred             CHHHHHhhhcchhhh-cCcCCCccceEeccchHHHHHhCCCcccCCeeeEEEEEECCCCcEEEEEecCCCcccCHHHHHH
Confidence            368999999765443 4566899999999999999999999877789999999999999999999999999999999999


Q ss_pred             HHHhhhhhhhcCCcccCC
Q psy13875         84 LVKAFQFVDKHGEGSKRV  101 (105)
Q Consensus        84 ~l~~l~~~~~~~~~~~~~  101 (105)
                      .|++||...++|++||+-
T Consensus       157 ~l~alq~~~~~g~~cp~~  174 (197)
T d1qmva_         157 LVQAFQYTDEHGEVCPAG  174 (197)
T ss_dssp             HHHHHHHHHHHCCBBCTT
T ss_pred             HHHhhccccccCcCcCCC
Confidence            999999999999999864

>d1xcca_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=99.90  E-value=2.9e-24  Score=153.11  Aligned_cols=95  Identities=24%  Similarity=0.457  Sum_probs=84.0

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC------CccceeEEEECCCCCEEEEEeccCCCCCCH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA------GIPLRGLFIIDTKGVLRQITVNDLPVGRSV   78 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~------G~~~ratfiID~~G~V~~~~~~~~~~~~~~   78 (105)
                      +++|++|+++... .+++++++||||||.+++|+++||+..+..      +++.|+|||||++|+|++++++++..+||+
T Consensus        75 ~~sh~~w~~~~~~-~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~R~tFiIDp~g~Ir~~~~~~~~~gr~~  153 (219)
T d1xcca_          75 KESHDKWIEDIKY-YGKLNKWEIPIVCDESRELANKLKIMDEQEKDITGLPLTCRCLFFISPEKKIKATVLYPATTGRNA  153 (219)
T ss_dssp             HHHHHHHHHHHHH-HHTCSCCCCCEEECTTSHHHHHHTCEEEEEECTTSCEEECEEEEEECTTSBEEEEEEECTTBCCCH
T ss_pred             HhHHhHHhhhhHh-hcccCCCCcccccccccHHHHHhCCcccccccCcccceeeeeeEEEcCcceEEEEEEeCCCcccCH
Confidence            6899999977532 245568999999999999999999987642      257899999999999999999899999999


Q ss_pred             HHHHHHHHhhhhhhhcCCcccC
Q psy13875         79 EEVLRLVKAFQFVDKHGEGSKR  100 (105)
Q Consensus        79 ~eil~~l~~l~~~~~~~~~~~~  100 (105)
                      +|+|+.|++||..+++|++||+
T Consensus       154 ~EiLr~l~aLQ~~~~~~~~~Pa  175 (219)
T d1xcca_         154 HEILRVLKSLQLTYTTPVATPV  175 (219)
T ss_dssp             HHHHHHHHHHHHHHHSSEEBCT
T ss_pred             HHHHHHHHHHHHHHhCCCCcCC
Confidence            9999999999999999999986

>d1prxa_ c.47.1.10 (A:) 1-Cys peroxiredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1e-22  Score=144.98  Aligned_cols=97  Identities=21%  Similarity=0.390  Sum_probs=84.2

Q ss_pred             chHHHHHHHHhhhc--CCCCCCCCCceEEeeCcchHHhhhCCccccC------CccceeEEEECCCCCEEEEEeccCCCC
Q psy13875          4 VDEGDEVWLEDVKQ--GDGGLGDLKYPLLADFKKEIATSYGVLIESA------GIPLRGLFIIDTKGVLRQITVNDLPVG   75 (105)
Q Consensus         4 ~~~sh~~w~~~~~~--~~~~~~~l~fpllsD~~~~vak~ygv~~~~~------G~~~ratfiID~~G~V~~~~~~~~~~~   75 (105)
                      ..++|++|++....  ..++..+++||||||.+++|+++||+..+..      +++.|+|||||++|+|+++++++...+
T Consensus        71 s~~sh~~~~~~~~~~~~~~~~~~l~fpllsD~~~~va~~ygv~~~~~~~~~~~~~~~RatFIID~~g~Ir~~~~~~~~~g  150 (220)
T d1prxa_          71 SVEDHLAWSKDINAYNSEEPTEKLPFPIIDDRNRELAILLGMLDPAEKDEKGMPVTARVVFVFGPDKKLKLSILYPATTG  150 (220)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCCSCCSSCEEECTTCHHHHHTTSSCSCTTCSSSCCTTCCEEEEECTTSBEEEEEECCTTBC
T ss_pred             cccchhhhhhhhhhccccccccCcccccccCcccHHHHHhCCccccccccccceeeeEEEEEEcCccceeEEEEecCCcc
Confidence            36799999876432  1234458999999999999999999987643      358999999999999999999999999


Q ss_pred             CCHHHHHHHHHhhhhhhhcCCcccC
Q psy13875         76 RSVEEVLRLVKAFQFVDKHGEGSKR  100 (105)
Q Consensus        76 ~~~~eil~~l~~l~~~~~~~~~~~~  100 (105)
                      ||++|+||.|++||..+++|++||+
T Consensus       151 R~~dEiLr~l~alq~~~~~~~~~Pa  175 (220)
T d1prxa_         151 RNFDEILRVVISLQLTAEKRVATPV  175 (220)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCEEBCT
T ss_pred             cchHHHHHHHHHHhhhhcCCcCcCC
Confidence            9999999999999999999999987

>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin reductase TsaA
species: Helicobacter pylori [TaxId: 210]

Probab=99.87  E-value=1.2e-22  Score=138.99  Aligned_cols=93  Identities=38%  Similarity=0.749  Sum_probs=82.3

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      +++|++|++.... .+.+.+++||+|||++++++++||+..+. |++.|+|||||++|+|+++++++...++|++++|++
T Consensus        78 ~~~~~~~~~~~~~-~~~~~~~~~~~l~D~~~~v~~~ygv~~~~-~~~~r~tfvID~~G~I~~~~~~~~~~~~~~~eiL~~  155 (170)
T d1zofa1          78 EQVHFAWKNTPVE-KGGIGQVSFPMVADITKSISRDYDVLFEE-AIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRM  155 (170)
T ss_dssp             HHHHHHHHTSCGG-GTCCCCCSSCEEECTTSHHHHHTTCEETT-TEECEEEEEEETTTEEEEEEEESSSCCCHHHHHHHH
T ss_pred             hhhHHHHHhhhhh-cccccCcccccccccccHHHHHcCCCccc-cceeEEEEEEcCCCeEEEEEEeCCCCCCCHHHHHHH
Confidence            6799999965432 24556899999999999999999998653 778999999999999999999888888999999999


Q ss_pred             HHhhhhhhhcCCccc
Q psy13875         85 VKAFQFVDKHGEGSK   99 (105)
Q Consensus        85 l~~l~~~~~~~~~~~   99 (105)
                      |++||+..++|++||
T Consensus       156 l~aLq~~~~~~~~~p  170 (170)
T d1zofa1         156 VDALLHFEEHGEVCP  170 (170)
T ss_dssp             HHHHHHHHSSCCCCC
T ss_pred             HHHhhhHHhcCCcCc
Confidence            999999999999997

>d2zcta1 c.47.1.10 (A:6-242) Peroxiredoxin {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin
species: Aeropyrum pernix [TaxId: 56636]

Probab=99.86  E-value=3.9e-22  Score=143.44  Aligned_cols=94  Identities=28%  Similarity=0.472  Sum_probs=80.1

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCC-ccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAG-IPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G-~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      .++|++|++..... + ..+++||+|+|++++|+++||+..++.+ .+.|++||||++|+|+++++++...+||++|+|+
T Consensus        74 ~~sh~~w~~~~~~~-~-~~~l~fpllsD~~~~vak~yGv~~~~~~~~~~RatFIIDpdG~Ir~~~~~~~~~gR~~dEiLr  151 (237)
T d2zcta1          74 VFSHIKWKEWIERH-I-GVRIPFPIIADPQGTVARRLGLLHAESATHTVRGVFIVDARGVIRTMLYYPMELGRLVDEILR  151 (237)
T ss_dssp             HHHHHHHHHHHHHH-H-CCCCCSCEEECGGGHHHHHTTCC----CCTTCCEEEEECTTSBEEEEEECCTTBCCCHHHHHH
T ss_pred             HHHHHHHhhhhhhh-c-ccccccccccCcchHHHHHcCCccccccccceeeeEEECCCCEEEEEEEeCCCCCCCHHHHHH
Confidence            57999999764322 1 2379999999999999999999865543 6899999999999999999999989999999999


Q ss_pred             HHHhhhhhhhcCCcccC
Q psy13875         84 LVKAFQFVDKHGEGSKR  100 (105)
Q Consensus        84 ~l~~l~~~~~~~~~~~~  100 (105)
                      +|++||..+++|++||+
T Consensus       152 ~l~aLQ~~~~~~~~~Pa  168 (237)
T d2zcta1         152 IVKALKLGDSLKRAVPA  168 (237)
T ss_dssp             HHHHHHHHHHHTCBBCT
T ss_pred             HHHHHhhhccCCcCCcC
Confidence            99999999999999986

>d1we0a1 c.47.1.10 (A:1-166) Alkyl hydroperoxide reductase AhpC {Amphibacillus xylanus [TaxId: 1449]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Amphibacillus xylanus [TaxId: 1449]

Probab=99.85  E-value=5.2e-22  Score=135.36  Aligned_cols=90  Identities=32%  Similarity=0.563  Sum_probs=79.8

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      +++|++|+++....    .+++||+|+|++++++++||+.....|++.|+|||||++|+|+++++++...+++++|+|+.
T Consensus        76 ~~~~~~~~~~~~~~----~~~~fpll~D~~~~v~~~ygv~~~~~~~~~r~tfvID~~G~I~~~~i~~~~~~r~~~eil~~  151 (166)
T d1we0a1          76 HFVHKAWHENSPAV----GSIEYIMIGDPSQTISRQFDVLNEETGLADRGTFIIDPDGVIQAIEINADGIGRDASTLINK  151 (166)
T ss_dssp             HHHHHHHHHSCHHH----HTCCSEEEECTTCHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTSCCCTTHHHHH
T ss_pred             HHHHHHHhhhhhhh----cccccccccCcccHHHHHhCCCccccCcccceEEEECCCCcEEEEEEcCCCCCCCHHHHHHH
Confidence            67999999764221    26899999999999999999987777889999999999999999999888888999999999


Q ss_pred             HHhhhhhhhc-CCcc
Q psy13875         85 VKAFQFVDKH-GEGS   98 (105)
Q Consensus        85 l~~l~~~~~~-~~~~   98 (105)
                      |++||..+++ |+.|
T Consensus       152 lkal~~~~~~~g~~c  166 (166)
T d1we0a1         152 VKAAQYVRENPGEVC  166 (166)
T ss_dssp             HHHHHHHHTSTTCCC
T ss_pred             HHhcchhhhcCCCCC
Confidence            9999999887 7765

>d1zyea1 c.47.1.10 (A:6-163) Peroxiredoxin-3 (AOP-1, SP-22) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin-3 (AOP-1, SP-22)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.84  E-value=4.4e-21  Score=129.57  Aligned_cols=88  Identities=55%  Similarity=0.995  Sum_probs=76.1

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      .+++|++|+++.... ...++++||+|||++++++++||+.....|++.|+|||||++|+|+++++++.+.++|++|+|+
T Consensus        70 ~~~~~~~~~~~~~~~-~~~~~~~f~llsD~~~~~~~~ygv~~~~~g~~~R~tfvID~~G~I~~~~i~~~~~~~~~~EiL~  148 (158)
T d1zyea1          70 SHFSHLAWINTPRKN-GGLGHMNIALLSDLTKQISRDYGVLLEGPGLALRGLFIIDPNGVIKHLSVNDLPVGRSVEETLR  148 (158)
T ss_dssp             CHHHHHHHHTSCGGG-TCCCSCSSEEEECTTSHHHHHTTCEETTTTEECEEEEEECTTSBEEEEEEECTTCCCCHHHHHH
T ss_pred             CHHHHHHHHhhhHhh-ccccccccccccccccHHHHHHHhccccCCccccEEEEECCCCEEEEEEEeCCCCCCCHHHHHH
Confidence            368999999763221 2335889999999999999999998776788999999999999999999988888999999999


Q ss_pred             HHHhhhhhh
Q psy13875         84 LVKAFQFVD   92 (105)
Q Consensus        84 ~l~~l~~~~   92 (105)
                      .|++||+.+
T Consensus       149 ~lkalq~~~  157 (158)
T d1zyea1         149 LVKAFQFVE  157 (158)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHhhhhh
Confidence            999999764

>d2h01a1 c.47.1.10 (A:2-171) Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin) {Plasmodium yoelii [TaxId: 5861]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin peroxidase 2 (thioredoxin peroxidase B, 2-cys peroxiredoxin)
species: Plasmodium yoelii [TaxId: 5861]

Probab=99.84  E-value=3.3e-21  Score=131.77  Aligned_cols=95  Identities=37%  Similarity=0.669  Sum_probs=82.4

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      .+++|++|+++. +..+.+.+++||+|||.+++++++||+..+ .+++.|+|||||++|+|++++++.++.++|++++|+
T Consensus        71 ~~~~~~~~~~~~-~~~~~~~~~~f~llsD~~~~~~~~ygv~~~-~~~~~R~tfiId~~G~I~~~~~~~~~~~~~~~eil~  148 (170)
T d2h01a1          71 SKFTHLAWKKTP-LSQGGIGNIKHTLISDISKSIARSYDVLFN-ESVALRAFVLIDKQGVVQHLLVNNLALGRSVDEILR  148 (170)
T ss_dssp             CHHHHHHHHTSC-GGGTCCCSCSSEEEECTTSHHHHHTTCEET-TTEECCEEEEECTTSBEEEEEEGGGSSGGGHHHHHH
T ss_pred             cHHHHHhHhhhh-hhhccccccCCceeEcCccHHHHHhCCccc-cccceeeeEEEcCCCeEEEEEEecCCCCCCHHHHHH
Confidence            367999999653 223445689999999999999999999764 367899999999999999999988888899999999


Q ss_pred             HHHhhhhhhhcCCcccC
Q psy13875         84 LVKAFQFVDKHGEGSKR  100 (105)
Q Consensus        84 ~l~~l~~~~~~~~~~~~  100 (105)
                      +|++||..++++++||.
T Consensus       149 ~l~~lq~~~~~~~~~~~  165 (170)
T d2h01a1         149 LIDALQHHEKYGDVCPA  165 (170)
T ss_dssp             HHHHHHHHHHHCCCCCS
T ss_pred             HHHHhhhhhhcCCccCC
Confidence            99999999999999964

>d1e2ya_ c.47.1.10 (A:) Tryparedoxin peroxidase (thioredoxin peroxidase homologue) {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin peroxidase (thioredoxin peroxidase homologue)
species: Crithidia fasciculata [TaxId: 5656]

Probab=99.79  E-value=2.5e-19  Score=121.17  Aligned_cols=90  Identities=52%  Similarity=0.920  Sum_probs=78.2

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      +++|++|+.+.... .....++|++++|+++++++.||+.....|++.|++||||++|+|+++++++...+++++|+|+.
T Consensus        78 ~~~~~~~~~~~~~~-~~~~~~~~~~l~d~~~~~~~~y~v~~~~~g~~~r~tfvID~~G~Ir~~~~~~~~~~~~~~evL~~  156 (167)
T d1e2ya_          78 EYSHLQWTSVDRKK-GGLGPMAIPMLADKTKAIARAYGVLDEDSGVAYRGVFIIDPNGKLRQIIINDMPIGRNVEEVIRL  156 (167)
T ss_dssp             HHHHHHHHHSCGGG-TCCCCCSSCEEECTTCHHHHHHTCEETTTTEECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHH
T ss_pred             HHhHHHHHhhHHHh-cccccccccccccchhHHHHHcCCCcccCCCceeEEEEECCCCEEEEEEEcCCCCCCCHHHHHHH
Confidence            57899999654322 23346899999999999999999987777889999999999999999999887778899999999


Q ss_pred             HHhhhhhhhcC
Q psy13875         85 VKAFQFVDKHG   95 (105)
Q Consensus        85 l~~l~~~~~~~   95 (105)
                      |++||+.+++|
T Consensus       157 l~alq~~~~~g  167 (167)
T d1e2ya_         157 VEALQFVEEHG  167 (167)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHhHHHhcC
Confidence            99999999886

>d2bmxa1 c.47.1.10 (A:2-170) Alkyl hydroperoxide reductase AhpC {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Alkyl hydroperoxide reductase AhpC
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.78  E-value=4.9e-19  Score=119.86  Aligned_cols=81  Identities=32%  Similarity=0.553  Sum_probs=70.5

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      +++|++|+++.    +....++||+|||++++++++||++.+ .+.+.|++||||++|+|+++++++...+++++|+|+.
T Consensus        89 ~~~~~~~~~~~----~~~~~~~f~ll~D~~~~v~~~ygv~~~-~~~~~r~~fvID~~G~I~~~~~~~~~~~~~~~evl~~  163 (169)
T d2bmxa1          89 EFAHFQWRAQH----NDLKTLPFPMLSDIKRELSQAAGVLNA-DGVADRVTFIVDPNNEIQFVSATAGSVGRNVDEVLRV  163 (169)
T ss_dssp             HHHHHHHHHHC----TTGGGCCSCEEECTTSHHHHHHTCBCT-TSSBCEEEEEECTTSBEEEEEEECTTCCCCHHHHHHH
T ss_pred             hhhhhhhcccc----cccccceEEEEeccHHHHHHHcCCCcc-CCccceeEEEEcCCCEEEEEEEcCCCCCCCHHHHHHH
Confidence            57899999874    223468999999999999999999754 3678999999999999999999887788999999999


Q ss_pred             HHhhhh
Q psy13875         85 VKAFQF   90 (105)
Q Consensus        85 l~~l~~   90 (105)
                      |++||.
T Consensus       164 l~alq~  169 (169)
T d2bmxa1         164 LDALQS  169 (169)
T ss_dssp             HHHHHC
T ss_pred             HHHhcC
Confidence            999873

>d1xvwa1 c.47.1.10 (A:1-153) Putative peroxiredoxin Rv2238c/MT2298 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Putative peroxiredoxin Rv2238c/MT2298
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.59  E-value=3.3e-15  Score=98.80  Aligned_cols=77  Identities=27%  Similarity=0.538  Sum_probs=67.0

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeC--cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADF--KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVL   82 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~--~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil   82 (105)
                      +++|++|+++.        +++||+++|.  ++.++++||+..+..|++.|+|||||++|+|++.++.+....++..++.
T Consensus        74 ~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~ygv~~~~~g~~~r~tfvID~~G~I~~~~~~~~~~~~~~~~~~  145 (153)
T d1xvwa1          74 PPTHKIWATQS--------GFTFPLLSDFWPHGAVSQAYGVFNEQAGIANRGTFVVDRSGIIRFAEMKQPGEVRDQRLWT  145 (153)
T ss_dssp             HHHHHHHHHHH--------TCCSCEEECTTTTTHHHHHTTCEETTTTEECSEEEEECTTSBEEEEEECCTTCCCCHHHHH
T ss_pred             hhHHHHHhhhh--------ccceeEEecccccchhHHHhhhhhhccCceeeeEEEECCCCEEEEEEEeCCCcccCHHHHH
Confidence            67899999873        7899999886  6899999999877778889999999999999999987666677888888


Q ss_pred             HHHHhhh
Q psy13875         83 RLVKAFQ   89 (105)
Q Consensus        83 ~~l~~l~   89 (105)
                      ++|++|+
T Consensus       146 ~~L~aL~  152 (153)
T d1xvwa1         146 DALAALT  152 (153)
T ss_dssp             HHHHHTC
T ss_pred             HHHHhhc
Confidence            8888875

>d2cx4a1 c.47.1.10 (A:4-163) Bacterioferritin comigratory protein {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Bacterioferritin comigratory protein
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.51  E-value=4.2e-14  Score=93.59  Aligned_cols=77  Identities=23%  Similarity=0.379  Sum_probs=64.4

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC----CccceeEEEECCCCCEEEEEeccCCC-CCCHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA----GIPLRGLFIIDTKGVLRQITVNDLPV-GRSVE   79 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~----G~~~ratfiID~~G~V~~~~~~~~~~-~~~~~   79 (105)
                      ++.+++|.++.        +++|++++|.+++++++||+..+..    +.+.|++||||++|+|++++++.... .++++
T Consensus        75 ~~~~~~~~~~~--------~~~~~~l~D~~~~~~~~~gv~~~~~~~~~~~~~~~~flId~~G~I~~~~~~~~~~~~~~~~  146 (160)
T d2cx4a1          75 PWCLKKFKDEN--------RLAFNLLSDYNREVIKLYNVYHEDLKGLKMVAKRAVFIVKPDGTVAYKWVTDNPLNEPDYD  146 (160)
T ss_dssp             HHHHHHHHHHH--------TCSSEEEECTTSHHHHHTTCEEEEETTEEEEECCEEEEECTTSBEEEEEECSSTTCCCCHH
T ss_pred             hhhhhhhcccc--------eeeEEEeecCCcchHHHcCccccccccccccceeeEEEEcCCCEEEEEEEeCCCCCCCCHH
Confidence            67899999773        7899999999999999999986432    24679999999999999999876443 45899


Q ss_pred             HHHHHHHhhh
Q psy13875         80 EVLRLVKAFQ   89 (105)
Q Consensus        80 eil~~l~~l~   89 (105)
                      ++++.++++.
T Consensus       147 eil~~l~~l~  156 (160)
T d2cx4a1         147 EVVREANKIA  156 (160)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999998875

>d1psqa_ c.47.1.10 (A:) Probable thiol peroxidase PsaD {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol peroxidase PsaD
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.45  E-value=2.6e-13  Score=90.98  Aligned_cols=77  Identities=22%  Similarity=0.409  Sum_probs=61.6

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCC-ceEEee-CcchHHhhhCCccccCCccceeEEEECCCCCEEEEEecc-CCCCCCHHH
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLK-YPLLAD-FKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVND-LPVGRSVEE   80 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~-fpllsD-~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~-~~~~~~~~e   80 (105)
                      .+++|++|.++.        ++. +++++| .++.++++||+.....+++.|++||||++|+|+|+++.+ ...++++++
T Consensus        84 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~ygv~~~~~~~~~Ra~fvID~~G~I~y~~~~~~~~~~~~~~~  155 (163)
T d1psqa_          84 LPFAQKRWCGAE--------GLDNAIMLSDYFDHSFGRDYALLINEWHLLARAVFVLDTDNTIRYVEYVDNINSEPNFEA  155 (163)
T ss_dssp             CHHHHHHHHHHH--------TCTTSEEEECTTTCHHHHHHTCBCTTTCSBCCEEEEECTTCBEEEEEECSBTTSCCCHHH
T ss_pred             cHHHHHHHHHHc--------CCcceeeeccccchhHHHhheeecccccceeEEEEEECCCCEEEEEEEcCCCCCCCCHHH
Confidence            367899999773        333 444444 578999999998776677899999999999999998765 455678999


Q ss_pred             HHHHHHhh
Q psy13875         81 VLRLVKAF   88 (105)
Q Consensus        81 il~~l~~l   88 (105)
                      ++++|++|
T Consensus       156 il~alk~L  163 (163)
T d1psqa_         156 AIAAAKAL  163 (163)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhcC
Confidence            99999875

>d2a4va1 c.47.1.10 (A:59-214) Peroxiredoxin dot5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin dot5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.44  E-value=6.1e-14  Score=93.61  Aligned_cols=78  Identities=26%  Similarity=0.337  Sum_probs=60.2

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCC---CCCCHHH
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLP---VGRSVEE   80 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~---~~~~~~e   80 (105)
                      .+++|++|++++        +++||+|||++++++++||+.....+...|++||+ .||+|++++++..+   ...+.++
T Consensus        76 ~~~~~~~f~~~~--------~l~f~~L~D~~~~v~~~ygv~~~~~~~~~r~~~i~-~dg~i~~~~~~~~~~~~~~~~~~e  146 (156)
T d2a4va1          76 SVTSQKKFQSKQ--------NLPYHLLSDPKREFIGLLGAKKTPLSGSIRSHFIF-VDGKLKFKRVKISPEVSVNDAKKE  146 (156)
T ss_dssp             CHHHHHHHHHHH--------TCSSEEEECTTCHHHHHHTCBSSSSSCBCCEEEEE-ETTEEEEEEESCCHHHHHHHHHHH
T ss_pred             hhhhHHhhhccc--------CccceeccchHHHHHHHcCCCccccCCeeEEEEEE-ECCeEEEEEEEeCCCCCcchHHHH
Confidence            367899999884        78999999999999999999865433356777777 69999999986432   2234678


Q ss_pred             HHHHHHhhhh
Q psy13875         81 VLRLVKAFQF   90 (105)
Q Consensus        81 il~~l~~l~~   90 (105)
                      +|++|++|++
T Consensus       147 vl~~lk~l~~  156 (156)
T d2a4va1         147 VLEVAEKFKE  156 (156)
T ss_dssp             HHHHHHHTTC
T ss_pred             HHHHHHHhcC
Confidence            8888888763

>d1hd2a_ c.47.1.10 (A:) Peroxiredoxin 5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peroxiredoxin 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.6e-12  Score=86.89  Aligned_cols=78  Identities=14%  Similarity=0.172  Sum_probs=54.7

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCC------ccceeEEEECCCCCEEEEEeccCCCCCC
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAG------IPLRGLFIIDTKGVLRQITVNDLPVGRS   77 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G------~~~ratfiID~~G~V~~~~~~~~~~~~~   77 (105)
                      .+++|++|+++.     . ...+|++|||++++++++||+..+..+      ...|.+|+|+++|+|+++++.+...+++
T Consensus        77 ~~~~~~~~~~~~-----~-~~~~~~llsD~~~~~a~~~g~~~~~~~~g~~~~~~s~r~~~I~~~G~I~~~~ve~~~~~~~  150 (161)
T d1hd2a_          77 DAFVTGEWGRAH-----K-AEGKVRLLADPTGAFGKETDLLLDDSLVSIFGNRRLKRFSMVVQDGIVKALNVEPDGTGLT  150 (161)
T ss_dssp             CHHHHHHHHHHT-----T-CTTTCEEEECTTCHHHHHHTCBCCSTTHHHHSSCCBCCEEEEEETTEEEEEEECTTSSCSS
T ss_pred             chhhhhhhhhhc-----c-cccccccccCCcceeeeeeeeeeccccCccccccEEeEEEEEECCCEEEEEEEeCCCCCCC
Confidence            367999999773     1 256899999999999999999876432      2234445555699999999876555665


Q ss_pred             HHHHHHHHHh
Q psy13875         78 VEEVLRLVKA   87 (105)
Q Consensus        78 ~~eil~~l~~   87 (105)
                      +.+..+.|++
T Consensus       151 ~s~a~~vL~~  160 (161)
T d1hd2a_         151 CSLAPNIISQ  160 (161)
T ss_dssp             TTSHHHHHHH
T ss_pred             cCcHHHHHhc
Confidence            4444444443

>d1qxha_ c.47.1.10 (A:) Thiol peroxidase Tpx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=1.4e-12  Score=87.45  Aligned_cols=72  Identities=18%  Similarity=0.233  Sum_probs=56.6

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEe--eCcchHHhhhCCcccc---CCccceeEEEECCCCCEEEEEecc-CCCCCC
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLA--DFKKEIATSYGVLIES---AGIPLRGLFIIDTKGVLRQITVND-LPVGRS   77 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fplls--D~~~~vak~ygv~~~~---~G~~~ratfiID~~G~V~~~~~~~-~~~~~~   77 (105)
                      .+++|++|+++        .+++|++++  |.+++++++||+....   .|++.|++||||++|+|+|+++.+ ...+++
T Consensus        86 ~~~~~~~~~~~--------~~~~~~~~~~~d~~~~~~~~ygv~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~pd  157 (164)
T d1qxha_          86 LPFAQSRFCGA--------EGLNNVITLSTFRNAEFLQAYGVAIADGPLKGLAARAVVVIDENDNVIFSQLVDEITTEPD  157 (164)
T ss_dssp             CHHHHTTCCSS--------TTCTTEEEEECTTCHHHHHHTTCBBCSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCC
T ss_pred             CHHHHHHHHHH--------hCCCcceeeccccchhhHHhcCeEeecCcccCcccCEEEEEcCCCEEEEEEEcCCCCCCCC
Confidence            36788889865        267888775  5589999999997543   367789999999999999998865 445678


Q ss_pred             HHHHHH
Q psy13875         78 VEEVLR   83 (105)
Q Consensus        78 ~~eil~   83 (105)
                      ++++|+
T Consensus       158 ~d~~l~  163 (164)
T d1qxha_         158 YEAALA  163 (164)
T ss_dssp             HHHHTC
T ss_pred             HHHhhc
Confidence            888764

>d1xvqa_ c.47.1.10 (A:) Thiol peroxidase Tpx {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.29  E-value=3.3e-12  Score=85.64  Aligned_cols=76  Identities=17%  Similarity=0.264  Sum_probs=57.4

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEE-eeCcchHHhhhCCcccc---CCccceeEEEECCCCCEEEEEecc-CCCCCCHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLL-ADFKKEIATSYGVLIES---AGIPLRGLFIIDTKGVLRQITVND-LPVGRSVE   79 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpll-sD~~~~vak~ygv~~~~---~G~~~ratfiID~~G~V~~~~~~~-~~~~~~~~   79 (105)
                      +++|++|+++.        ++.|+++ +|.+..+++.||+....   .|++.|++||||++|+|+|.++.+ ....++++
T Consensus        85 ~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~ra~fvID~~G~I~y~~~~~~~~~~~~~d  156 (166)
T d1xvqa_          85 PFAQKRFCGAE--------GTENVMPASAFRDSFGEDYGVTIADGPMAGLLARAIVVIGADGNVAYTELVPEIAQEPNYE  156 (166)
T ss_dssp             HHHHTTCC--------------CEEEEECTTSSHHHHTTCBBCSSTTTTSBCSEEEEECTTSBEEEEEECSBTTCCCCHH
T ss_pred             HHHHHHHHHHh--------CCcccccccchhHHHHHHhCeeeccCcccCceeeEEEEEeCCCEEEEEEEcCCCCCCCCHH
Confidence            56888888652        6677765 56789999999998653   256789999999999999998864 55567999


Q ss_pred             HHHHHHHhh
Q psy13875         80 EVLRLVKAF   88 (105)
Q Consensus        80 eil~~l~~l   88 (105)
                      +++++|++.
T Consensus       157 ~il~aL~a~  165 (166)
T d1xvqa_         157 AALAALGAT  165 (166)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHhc
Confidence            999999875

>d1q98a_ c.47.1.10 (A:) Thiol peroxidase Tpx {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol peroxidase Tpx
species: Haemophilus influenzae [TaxId: 727]

Probab=99.25  E-value=4.8e-12  Score=84.86  Aligned_cols=74  Identities=14%  Similarity=0.282  Sum_probs=57.3

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCC-ceEEeeC-cchHHhhhCCcccc---CCccceeEEEECCCCCEEEEEecc-CCCCCC
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLK-YPLLADF-KKEIATSYGVLIES---AGIPLRGLFIIDTKGVLRQITVND-LPVGRS   77 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~-fpllsD~-~~~vak~ygv~~~~---~G~~~ratfiID~~G~V~~~~~~~-~~~~~~   77 (105)
                      .+++|++|+++.        ++. +++++|. +..+++.||+....   .|++.|++||||++|+|+|+++.+ ...+++
T Consensus        84 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~Ra~fvID~~G~I~y~~~~~~~~~epd  155 (164)
T d1q98a_          84 LPFAQARFCGAE--------GIENAKTVSTFRNHALHSQLGVDIQTGPLAGLTSRAVIVLDEQNNVLHSQLVEEIKEEPN  155 (164)
T ss_dssp             CHHHHTTCTTTT--------TCTTEEEEECTTCTHHHHHTTCEECSSTTTTSBCCEEEEECTTSBEEEEEECSBTTSCCC
T ss_pred             cHHHHHHHHHHh--------CCccccccccccchhHHHhhceecccCccccCcccEEEEECCCCEEEEEEECCCCCCCCC
Confidence            468999999662        555 5566664 67899999997653   367789999999999999999865 445678


Q ss_pred             HHHHHHHH
Q psy13875         78 VEEVLRLV   85 (105)
Q Consensus        78 ~~eil~~l   85 (105)
                      +++++++|
T Consensus       156 ~~~~l~~L  163 (164)
T d1q98a_         156 YEAALAVL  163 (164)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhh
Confidence            99888765

>d1tp9a1 c.47.1.10 (A:1-162) Plant peroxiredoxin {Western balsam poplar(Populus trichocarpa) [TaxId: 3694]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Plant peroxiredoxin
species: Western balsam poplar(Populus trichocarpa) [TaxId: 3694]

Probab=99.25  E-value=7.1e-12  Score=83.79  Aligned_cols=74  Identities=15%  Similarity=0.163  Sum_probs=56.1

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC--C---ccceeEEEECCCCCEEEEEeccCC-CC-C
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA--G---IPLRGLFIIDTKGVLRQITVNDLP-VG-R   76 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~--G---~~~ratfiID~~G~V~~~~~~~~~-~~-~   76 (105)
                      -+++|++|+.+.     +. ..+|+++||++++++++||+..+..  |   .+.|+||||| +|+|+++++.+.. .. .
T Consensus        81 ~~~~~~~~~~~~-----~~-~~~~~~lsD~~~~~~~~~g~~~~~~~~g~g~~~~R~tfiId-dg~I~~~~ve~~~~~~~s  153 (162)
T d1tp9a1          81 DPFVMKAWAKSY-----PE-NKHVKFLADGSATYTHALGLELDLQEKGLGTRSRRFALLVD-DLKVKAANIEGGGEFTVS  153 (162)
T ss_dssp             CHHHHHHHHHTC-----TT-CSSEEEEECTTSHHHHHTTCEEEETTTTSEEEECCEEEEEE-TTEEEEEEECSSSCCSSC
T ss_pred             chhhhhhhhhhc-----cc-ccccccccchhhHHHhhhhhccccccccCCcEEEEEEEEEE-CCEEEEEEEECCCCCccC
Confidence            368999999763     12 4579999999999999999976432  2   3689999999 8999999985432 12 3


Q ss_pred             CHHHHHHH
Q psy13875         77 SVEEVLRL   84 (105)
Q Consensus        77 ~~~eil~~   84 (105)
                      +.+++|+.
T Consensus       154 ~ae~vLk~  161 (162)
T d1tp9a1         154 SAEDILKD  161 (162)
T ss_dssp             SHHHHHTT
T ss_pred             CHHHHHhc
Confidence            57777654

>d1nm3a2 c.47.1.10 (A:3-165) N-terminal, Prx domain of Hybrid-Prx5 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: N-terminal, Prx domain of Hybrid-Prx5
species: Haemophilus influenzae [TaxId: 727]

Probab=99.21  E-value=3.4e-11  Score=80.63  Aligned_cols=74  Identities=18%  Similarity=0.331  Sum_probs=57.5

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccC--C---ccceeEEEECCCCCEEEEEeccCCCCC---
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESA--G---IPLRGLFIIDTKGVLRQITVNDLPVGR---   76 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~--G---~~~ratfiID~~G~V~~~~~~~~~~~~---   76 (105)
                      ++.+++|.++.       ....|++|||+++.++++||+.....  |   .+.|.+|||| +|+|+++++.+...++   
T Consensus        78 ~~~~~a~~~~~-------~~~~~~llsD~~~~~~~~~g~~~~~~~~g~g~~s~R~~~Iid-dG~I~~~~v~~~~~g~~~~  149 (163)
T d1nm3a2          78 TFVMNAWKEDE-------KSENISFIPDGNGEFTEGMGMLVGKEDLGFGKRSWRYSMLVK-NGVVEKMFIEPNEPGDPFK  149 (163)
T ss_dssp             HHHHHHHHHHT-------TCTTSEEEECTTSHHHHHTTCEEECTTTTCCEEECCEEEEEE-TTEEEEEEECCSCSSCCCS
T ss_pred             HHHHHHHhhhh-------ccCceeeeccCChHHHHHhhhhccccccccccccceEEEEEe-CCEEEEEEEecCCCCCCcc
Confidence            45677777552       25689999999999999999976432  2   4799999999 9999999997554433   


Q ss_pred             --CHHHHHHHHH
Q psy13875         77 --SVEEVLRLVK   86 (105)
Q Consensus        77 --~~~eil~~l~   86 (105)
                        +.+++|+.|.
T Consensus       150 ~s~ae~vL~~L~  161 (163)
T d1nm3a2         150 VSDADTMLKYLA  161 (163)
T ss_dssp             SSSHHHHHHHHC
T ss_pred             ccCHHHHHHHHc
Confidence              5788888774

>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thiol-disulfide oxidoreductase ResA
species: Bacillus subtilis [TaxId: 1423]

Probab=99.10  E-value=2.4e-10  Score=73.44  Aligned_cols=66  Identities=14%  Similarity=0.405  Sum_probs=52.1

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ..++++|+++.        +++||++.|.++++++.||+.    |  .|++||||++|+|++.+.|... ....+++++.
T Consensus        70 ~~~~~~~~~~~--------~~~~~~~~d~~~~~~~~~~v~----~--~P~~~liD~~G~i~~~~~G~~~-~~~~~~~l~~  134 (137)
T d1st9a_          70 KIAVHNFMKSY--------GVNFPVVLDTDRQVLDAYDVS----P--LPTTFLINPEGKVVKVVTGTMT-ESMIHDYMNL  134 (137)
T ss_dssp             HHHHHHHHHHT--------TCCSCEEEETTSHHHHHTTCC----S--SCEEEEECTTSEEEEEEESCCC-HHHHHHHHHH
T ss_pred             hhhHHHHHHHc--------CCCccccccccchhhhhhhcc----c--cceEEEECCCCEEEEEEECCCC-HHHHHHHHHh
Confidence            45778888762        789999999999999999987    4  6999999999999999998653 2234444444


Q ss_pred             H
Q psy13875         85 V   85 (105)
Q Consensus        85 l   85 (105)
                      |
T Consensus       135 l  135 (137)
T d1st9a_         135 I  135 (137)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d2b5xa1 c.47.1.10 (A:1-143) thiol:disulfide oxidoreductase YkuV {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: thiol:disulfide oxidoreductase YkuV
species: Bacillus subtilis [TaxId: 1423]

Probab=99.09  E-value=2.3e-10  Score=74.24  Aligned_cols=65  Identities=12%  Similarity=0.238  Sum_probs=53.0

Q ss_pred             HHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875          6 EGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV   85 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l   85 (105)
                      ...++|.++.        +++||++.|.++.+++.||+.      ..|++||||++|+|++.+.|..    ..+++.+.|
T Consensus        79 ~~~~~~~~~~--------~~~~p~~~D~~~~~~~~~~v~------~~P~~~~id~~G~i~~~~~G~~----~~~~l~~~l  140 (143)
T d2b5xa1          79 GKIKETAAEH--------DITQPIFVDSDHALTDAFENE------YVPAYYVFDKTGQLRHFQAGGS----GMKMLEKRV  140 (143)
T ss_dssp             HHHHHHHHHT--------TCCSCEEECSSCHHHHHTCCC------CSSEEEEECTTCBEEEEEESCS----TTHHHHHHH
T ss_pred             hhhhhHHHhh--------ccCccccccCccchHHHcCCC------cCCEEEEECCCCEEEEEEECCC----CHHHHHHHH
Confidence            3467788762        789999999999999999986      3699999999999999999854    456666666


Q ss_pred             Hhh
Q psy13875         86 KAF   88 (105)
Q Consensus        86 ~~l   88 (105)
                      ++|
T Consensus       141 ~~l  143 (143)
T d2b5xa1         141 NRV  143 (143)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            654

>d1lu4a_ c.47.1.10 (A:) Soluble secreted antigen MPT53 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Soluble secreted antigen MPT53
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.06  E-value=4.1e-10  Score=72.34  Aligned_cols=67  Identities=16%  Similarity=0.162  Sum_probs=54.5

Q ss_pred             HHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875          6 EGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV   85 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l   85 (105)
                      ...++|+++.        +++||++.|.++.++++||+.      ..|++||||++|+|+++... . ...+.+++.+.|
T Consensus        68 ~~~~~~~~~~--------~~~~p~~~d~~~~~~~~~~v~------~~P~~~lid~~G~i~~v~~~-~-g~~~~~~l~~~l  131 (134)
T d1lu4a_          68 GAMQSFVSKY--------NLNFTNLNDADGVIWARYNVP------WQPAFVFYRADGTSTFVNNP-T-AAMSQDELSGRV  131 (134)
T ss_dssp             HHHHHHHHHH--------TCCSEEEECTTSHHHHHTTCC------SSSEEEEECTTSCEEEECCS-S-SCCCHHHHHHHH
T ss_pred             hhhhhhhhhh--------ccccceeeCchHHHHHHcCCC------cCCEEEEEeCCCeEEEEecc-C-CCCCHHHHHHHH
Confidence            4566788763        789999999999999999987      36999999999999987542 2 244788999988


Q ss_pred             Hhh
Q psy13875         86 KAF   88 (105)
Q Consensus        86 ~~l   88 (105)
                      .+|
T Consensus       132 ~~L  134 (134)
T d1lu4a_         132 AAL  134 (134)
T ss_dssp             HHC
T ss_pred             HcC
Confidence            775

>d1xiya1 c.47.1.10 (A:2-180) 1-Cys peroxiredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: 1-Cys peroxiredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=98.93  E-value=2.2e-09  Score=73.39  Aligned_cols=75  Identities=16%  Similarity=0.236  Sum_probs=57.1

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCcccc--CCc---cceeEEEECCCCCEEEEEeccCCC-----
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIES--AGI---PLRGLFIIDTKGVLRQITVNDLPV-----   74 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~--~G~---~~ratfiID~~G~V~~~~~~~~~~-----   74 (105)
                      ++++++|.+..     ++.  ...+|||++++++++||+..+.  .|+   +.|.++||| +|+|.+.++.+...     
T Consensus        90 ~fv~~aW~~~~-----~~~--~I~~lsD~~g~f~k~lg~~~d~~~~g~G~Rs~R~a~iid-dg~I~~~~vE~~~~~~~~~  161 (179)
T d1xiya1          90 IYVLKSWFKSM-----DIK--KIKYISDGNSSFTDSMNMLVDKSNFFMGMRPWRFVAIVE-NNILVKMFQEKDKQHNIQT  161 (179)
T ss_dssp             HHHHHHHHHHT-----TCC--SSEEEECTTSHHHHHTTCEEECGGGTCCEEECCEEEEEE-TTEEEEEEECSSCCTTCSS
T ss_pred             HHHHHHHHhhc-----Ccc--eEEEeeCCchHHHHhhhcccccccCCCeeEEeeEEEEEE-CCEEEEEEEeCCCCCCCCC
Confidence            68999999762     232  3589999999999999997643  233   689999998 89999999854221     


Q ss_pred             ----CCCHHHHHHHHHh
Q psy13875         75 ----GRSVEEVLRLVKA   87 (105)
Q Consensus        75 ----~~~~~eil~~l~~   87 (105)
                          ..+.+.+|+.|+.
T Consensus       162 dp~~vSsae~iL~~L~~  178 (179)
T d1xiya1         162 DPYDISTVNNVKEFLKN  178 (179)
T ss_dssp             CCCSTTSHHHHHHHHHC
T ss_pred             CCcccCCHHHHHHHHhc
Confidence                1467888888764

>d2fy6a1 c.47.1.10 (A:33-175) Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain {Neisseria meningitidis serogroup A [TaxId: 65699]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Peptide methionine sulfoxide reductase MsrA/MsrB, N-terminal domain
species: Neisseria meningitidis serogroup A [TaxId: 65699]

Probab=98.90  E-value=3.3e-09  Score=68.19  Aligned_cols=56  Identities=20%  Similarity=0.270  Sum_probs=48.8

Q ss_pred             CCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ...||++.|.++++++.||+.    |  .|++||||++|+|++++.|.+    +.+++.+.|+.+.
T Consensus        85 ~~~~~~~~D~~~~~~~~~~v~----~--~P~~~liD~~G~i~~~~~G~~----~~~~~~~~l~~~~  140 (143)
T d2fy6a1          85 YPKLPVVTDNGGTIAQSLNIS----V--YPSWALIGKDGDVQRIVKGSI----NEAQALALIRDPN  140 (143)
T ss_dssp             CTTSCEEECTTCHHHHHTTCC----S--SSEEEEECTTSCEEEEEESCC----CHHHHHHHHHCTT
T ss_pred             CcccccccccchHHHHHcCCC----c--cCEEEEECCCCEEEEEEECCC----CHHHHHHHHHHHh
Confidence            568999999999999999987    3  699999999999999999865    5778888887764

>d1zzoa1 c.47.1.10 (A:45-178) Lipoprotein DsbF {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Lipoprotein DsbF
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.85  E-value=9e-09  Score=65.49  Aligned_cols=66  Identities=18%  Similarity=0.266  Sum_probs=51.5

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ....++|+++.       +...||++.|.++++++.||+.    |  .|++||||++|+|+++. +..    +.+++.+.
T Consensus        68 ~~~~~~~~~~~-------~~~~~~~l~D~~~~~~~~~~v~----~--~P~~~iiD~~G~i~~~~-g~~----~~~~l~~~  129 (134)
T d1zzoa1          68 VPAMQEFVNKY-------PVKTFTQLADTDGSVWANFGVT----Q--QPAYAFVDPHGNVDVVR-GRM----SQDELTRR  129 (134)
T ss_dssp             HHHHHHHHHHT-------TCTTSEEEECTTCHHHHHTTCC----S--SSEEEEECTTCCEEEEE-SCC----CHHHHHHH
T ss_pred             chhHHHHHHhc-------CCcceeEEeeccchHHHhcCCC----c--cCeEEEECCCCeEEEEE-CCC----CHHHHHHH
Confidence            34567787662       1336999999999999999987    4  69999999999998743 433    67888888


Q ss_pred             HHhh
Q psy13875         85 VKAF   88 (105)
Q Consensus        85 l~~l   88 (105)
                      |++|
T Consensus       130 i~~L  133 (134)
T d1zzoa1         130 VTAL  133 (134)
T ss_dssp             HHHH
T ss_pred             HHhh
Confidence            8876

>d1jfua_ c.47.1.10 (A:) Membrane-anchored thioredoxin-like protein TlpA, soluble domain {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Membrane-anchored thioredoxin-like protein TlpA, soluble domain
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.78  E-value=9.5e-09  Score=68.43  Aligned_cols=72  Identities=17%  Similarity=0.283  Sum_probs=54.9

Q ss_pred             hHHHHHHHHhhhcCCCCCCCCCc-eEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHH
Q psy13875          5 DEGDEVWLEDVKQGDGGLGDLKY-PLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLR   83 (105)
Q Consensus         5 ~~sh~~w~~~~~~~~~~~~~l~f-pllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~   83 (105)
                      ++..++|+++.        ++++ ++++|.++.+++.|+......|  .|++||||++|+|++++.|...  .+.+++++
T Consensus       102 ~~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~~~~~v~~--~P~~~lID~~G~I~~~~~G~~~--~~~~e~~~  169 (176)
T d1jfua_         102 PEKPKTFLKEA--------NLTRLGYFNDQKAKVFQDLKAIGRALG--MPTSVLVDPQGCEIATIAGPAE--WASEDALK  169 (176)
T ss_dssp             TTHHHHHHHHT--------TCCTTCCEECTTCHHHHHHHTTTCCSS--SSEEEEECTTSBEEEEEESCCC--TTSHHHHH
T ss_pred             hhhhhhhHhhh--------CCcceeeeecchhHHHHHHhhhccCCC--CCeEEEEcCCCEEEEEEECCCC--CChHHHHH
Confidence            45678888762        5564 5889999999998876643223  5999999999999999998653  34588988


Q ss_pred             HHHhh
Q psy13875         84 LVKAF   88 (105)
Q Consensus        84 ~l~~l   88 (105)
                      .|++|
T Consensus       170 ~l~al  174 (176)
T d1jfua_         170 LIRAA  174 (176)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88876

>d1z5ye1 c.47.1.10 (E:49-184) Thioredoxin-like protein CcmG (CycY, DsbE) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=8.5e-09  Score=65.95  Aligned_cols=43  Identities=28%  Similarity=0.349  Sum_probs=37.6

Q ss_pred             CCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccC
Q psy13875         24 DLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDL   72 (105)
Q Consensus        24 ~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~   72 (105)
                      ...++++.|.++.+++.||+.    |  .|++||||++|+|++.+.|..
T Consensus        73 ~~~~~~~~d~~~~~~~~~~v~----~--~P~~~liD~~G~i~~~~~G~~  115 (136)
T d1z5ye1          73 NPYALSLFDGDGMLGLDLGVY----G--APETFLIDGNGIIRYRHAGDL  115 (136)
T ss_dssp             CCCSEEEEESSCHHHHHHTCC----S--BSEEEEECTTSCEEEEEESCC
T ss_pred             CccceeecccchhHHHhcccC----C--cceEEEEcCCCEEEEEEEcCC
Confidence            345668899999999999987    4  799999999999999999865

>d2cvba1 c.47.1.10 (A:2-188) Probable thiol-disulfide isomerase/thioredoxin TTHA0593 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Probable thiol-disulfide isomerase/thioredoxin TTHA0593
species: Thermus thermophilus [TaxId: 274]

Probab=98.74  E-value=2.3e-08  Score=67.83  Aligned_cols=71  Identities=20%  Similarity=0.270  Sum_probs=51.8

Q ss_pred             HHHHHHHHhhhcCCCCCCCCCceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCC----CCHHHH
Q psy13875          6 EGDEVWLEDVKQGDGGLGDLKYPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVG----RSVEEV   81 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~----~~~~ei   81 (105)
                      +..++|.++.        +++||++.|.++.++++||+.      ..|.+||||++|+|+|.-.-.....    ....++
T Consensus        84 e~~~~~~~~~--------~~~~p~l~D~~~~~~~~~~v~------~~P~~~liD~~G~i~y~G~idd~~~~~~~~~~~~L  149 (187)
T d2cvba1          84 EKMAAFAEEH--------GIFFPYLLDETQEVAKAYRAL------RTPEVFLFDERRLLRYHGRVNDNPKDPSKVQSHDL  149 (187)
T ss_dssp             HHHHHHHHHH--------TCCSCEEECSSSHHHHHTTCC------EESEEEEECTTCBEEEEECSSSCTTCGGGCCCCHH
T ss_pred             HHHHHHHHHh--------CCcceeeechhhhhccccccc------ceeeEEEEcCCCeEEEEeeecCCCCCCCCCCHHHH
Confidence            4556777662        789999999999999999997      4799999999999998643222111    123456


Q ss_pred             HHHHHhhhh
Q psy13875         82 LRLVKAFQF   90 (105)
Q Consensus        82 l~~l~~l~~   90 (105)
                      .++|+++..
T Consensus       150 ~~Ai~~ll~  158 (187)
T d2cvba1         150 EAAIEALLR  158 (187)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHc
Confidence            677777653

>d1knga_ c.47.1.10 (A:) Thioredoxin-like protein CcmG (CycY, DsbE) {Bradyrhizobium japonicum [TaxId: 375]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein CcmG (CycY, DsbE)
species: Bradyrhizobium japonicum [TaxId: 375]

Probab=98.72  E-value=3.6e-08  Score=63.46  Aligned_cols=64  Identities=13%  Similarity=0.281  Sum_probs=48.5

Q ss_pred             HHHHHHHHhhhcCCCCCCCCCc-eEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHH
Q psy13875          6 EGDEVWLEDVKQGDGGLGDLKY-PLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRL   84 (105)
Q Consensus         6 ~sh~~w~~~~~~~~~~~~~l~f-pllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~   84 (105)
                      ...++|.++.        +..| +++.|.++++++.||+.    |  .|++||||++|+|++.+.|+.    +.+++.+.
T Consensus        74 ~~~~~~~~~~--------~~~~~~~~~d~~~~~~~~~~v~----~--~P~~~liD~~G~i~~~~~G~~----~~~~l~~~  135 (144)
T d1knga_          74 DNARRFLGRY--------GNPFGRVGVDANGRASIEWGVY----G--VPETFVVGREGTIVYKLVGPI----TPDNLRSV  135 (144)
T ss_dssp             HHHHHHHHHH--------CCCCSEEEEETTSHHHHHTTCC----S--SCEEEEECTTSBEEEEEESCC----CHHHHHHT
T ss_pred             HHHHHHHHHc--------CCccccccccccchhhhhcCcc----c--cceEEEEcCCCeEEEEEeCCC----CHHHHHHH
Confidence            4566777653        3444 48899999999999987    4  699999999999999998765    45555555


Q ss_pred             HHh
Q psy13875         85 VKA   87 (105)
Q Consensus        85 l~~   87 (105)
                      |++
T Consensus       136 i~~  138 (144)
T d1knga_         136 LLP  138 (144)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            544

>d1xzoa1 c.47.1.10 (A:3-174) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.98  E-value=2.6e-05  Score=51.08  Aligned_cols=80  Identities=9%  Similarity=0.178  Sum_probs=52.2

Q ss_pred             chHHHHHHHHhhhcCCCCCCCCCceEEeeCcchH-----HhhhCCcccc-CC---c-cceeEEEECCCCCEEEEEeccCC
Q psy13875          4 VDEGDEVWLEDVKQGDGGLGDLKYPLLADFKKEI-----ATSYGVLIES-AG---I-PLRGLFIIDTKGVLRQITVNDLP   73 (105)
Q Consensus         4 ~~~sh~~w~~~~~~~~~~~~~l~fpllsD~~~~v-----ak~ygv~~~~-~G---~-~~ratfiID~~G~V~~~~~~~~~   73 (105)
                      .++..++|++..     ++....+.+|++.+.+.     ++.|++.... .|   + -.+.+||||++|+|+..+.+.. 
T Consensus        81 tp~~l~~y~~~~-----~~~~~~w~~lt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~liD~~G~i~~~~~g~~-  154 (172)
T d1xzoa1          81 KPKQLKKFAANY-----PLSFDNWDFLTGYSQSEIEEFALKSFKAIVKKPEGEDQVIHQSSFYLVGPDGKVLKDYNGVE-  154 (172)
T ss_dssp             CHHHHHHHHTTS-----CCCGGGEEEEBCSCHHHHHHHHHHHHCCCCCCCSSCCSCCSCCEEEEECTTSEEEEEEESSS-
T ss_pred             hHHHHHHHHHHh-----ccccccceeeccchHHHHHHHHHhheeeEEeccCCCceEeeeeEEEEEcCCCeEEEEEcCCC-
Confidence            367788998652     22233456888876553     3556655321 11   1 2478999999999999887532 


Q ss_pred             CCCCHHHHHHHHHhhhh
Q psy13875         74 VGRSVEEVLRLVKAFQF   90 (105)
Q Consensus        74 ~~~~~~eil~~l~~l~~   90 (105)
                       ....+++++.|+++..
T Consensus       155 -~~~~~~l~~dik~~~~  170 (172)
T d1xzoa1         155 -NTPYDDIISDVKSAST  170 (172)
T ss_dssp             -SCCHHHHHHHHHHHTC
T ss_pred             -CCCHHHHHHHHHHHHh
Confidence             3468999988887753

>d2b7ka1 c.47.1.10 (A:111-279) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Baker's yeast(Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.69  E-value=2e-05  Score=49.68  Aligned_cols=38  Identities=13%  Similarity=0.267  Sum_probs=31.4

Q ss_pred             ceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         52 LRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        52 ~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      .+.+||||++|+|+.++.+..+.+...++|++.|++|-
T Consensus       130 ~~~~fLID~~G~vv~~~~~~~~~~~~~~~I~e~ik~ll  167 (169)
T d2b7ka1         130 SIFFYLMDPEGQFVDALGRNYDEKTGVDKIVEHVKSYV  167 (169)
T ss_dssp             CCCEEEECTTSCEEEEECTTCCTTHHHHHHHHHHHHCC
T ss_pred             cceEEEECCCCeEEEEECCCCCHHHHHHHHHHHHHHHh
Confidence            68999999999999998766665666788888888764

>d1wp0a1 c.47.1.10 (A:138-297) Thioredoxin-like protein Sco1 (YpmQ), soluble domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Thioredoxin-like protein Sco1 (YpmQ), soluble domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00035  Score=43.80  Aligned_cols=62  Identities=13%  Similarity=0.149  Sum_probs=41.9

Q ss_pred             CCCceEEeeCc---chHHhhhCCccccC--C-------ccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         24 DLKYPLLADFK---KEIATSYGVLIESA--G-------IPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        24 ~l~fpllsD~~---~~vak~ygv~~~~~--G-------~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      +.++..+.+..   ..++++|++.....  +       .-.+.+||||++|+|+..+-.    ..+.+++.+.|+++-
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~~~LId~~G~i~~~~~~----~~~~~~i~~~I~~~l  157 (160)
T d1wp0a1          84 SPKLVGLTGTREEVDQVARAYRVYYSPGPKDEDEDYIVDHTIIMYLIGPDGEFLDYFGQ----NKRKGEIAASIATHM  157 (160)
T ss_dssp             CTTCEEEECCHHHHHHHHHHTTCCEEECCCCGGGCCCEEECCEEEEECTTSCEEEEEET----TCCHHHHHHHHHHHH
T ss_pred             CCCcccccCchHHhhHHhhhhheeeecccCCCCCCceEeccceEEEECCCCcEEEEECC----CCCHHHHHHHHHHHH
Confidence            55777776553   46778888764321  1       014789999999999998742    336788888887643

>d1a8la2 c.47.1.2 (A:120-226) Protein disulfide isomerase, PDI {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.43  E-value=0.0025  Score=37.79  Aligned_cols=53  Identities=17%  Similarity=0.129  Sum_probs=37.8

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      .+.+-.+ .|....++++||+.    |  .|+ +++.++|+++..+.|..    ..+++++.|++
T Consensus        51 ~v~~~~id~~~~~~l~~~~~V~----~--vPT-i~i~~~G~~~~~~~G~~----~~~~~~~~i~~  104 (107)
T d1a8la2          51 KILGDMVEAIEYPEWADQYNVM----A--VPK-IVIQVNGEDRVEFEGAY----PEKMFLEKLLS  104 (107)
T ss_dssp             CEEEEEEEGGGCHHHHHHTTCC----S--SCE-EEEEETTEEEEEEESCC----CHHHHHHHHHH
T ss_pred             cEEEEEeccccccccccccccc----c--ceE-EEEEeCCeEEEEEECCC----CHHHHHHHHHH
Confidence            3444433 33457999999997    4  685 67779999999998744    57788777765

>d1o73a_ c.47.1.10 (A:) Tryparedoxin I {Trypanosoma brucei brucei [TaxId: 5702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Trypanosoma brucei brucei [TaxId: 5702]

Probab=96.26  E-value=0.002  Score=40.50  Aligned_cols=29  Identities=21%  Similarity=0.433  Sum_probs=23.4

Q ss_pred             cchHHhhhCCccccCCccceeEEEECCC-CCEEEEE
Q psy13875         34 KKEIATSYGVLIESAGIPLRGLFIIDTK-GVLRQIT   68 (105)
Q Consensus        34 ~~~vak~ygv~~~~~G~~~ratfiID~~-G~V~~~~   68 (105)
                      ...+++.||+.    |  .|++||||++ |+|+..+
T Consensus        97 ~~~l~~~y~v~----~--~Pt~~lID~~~G~Ii~~~  126 (144)
T d1o73a_          97 VSELGKTFGVE----S--IPTLITINADTGAIIGTQ  126 (144)
T ss_dssp             HHHHHHHHTCC----S--SSEEEEEETTTCCEEESC
T ss_pred             HHHHHHHcCCC----c--CCEEEEEECCCCEEEeec
Confidence            35688999987    4  6999999998 8987643

>d1i5ga_ c.47.1.10 (A:) Tryparedoxin II {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin II
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.25  E-value=0.0012  Score=41.76  Aligned_cols=37  Identities=16%  Similarity=0.173  Sum_probs=26.9

Q ss_pred             CCCceEEeeCc--chHHhhhCCccccCCccceeEEEECCC-CCEEE
Q psy13875         24 DLKYPLLADFK--KEIATSYGVLIESAGIPLRGLFIIDTK-GVLRQ   66 (105)
Q Consensus        24 ~l~fpllsD~~--~~vak~ygv~~~~~G~~~ratfiID~~-G~V~~   66 (105)
                      +..++.+.|..  ..+++.||+.    |  +|++||||++ |+|+.
T Consensus        85 ~~~~~~~~d~~~~~~l~~~y~v~----~--iPt~~lid~~~G~vi~  124 (144)
T d1i5ga_          85 PWLALPFEDRKGMEFLTTGFDVK----S--IPTLVGVEADSGNIIT  124 (144)
T ss_dssp             SSEECCTTCHHHHHHHHHHTTCC----S--SSEEEEEETTTCCEEE
T ss_pred             CCCceeeEChHHHHHHHHHCCCC----C--cCEEEEEeCCCCEEEe
Confidence            34444555554  3588999987    4  6999999997 89864

>d1o8xa_ c.47.1.10 (A:) Tryparedoxin I {Crithidia fasciculata [TaxId: 5656]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Tryparedoxin I
species: Crithidia fasciculata [TaxId: 5656]

Probab=96.11  E-value=0.0013  Score=41.03  Aligned_cols=37  Identities=16%  Similarity=0.333  Sum_probs=27.9

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCC-CCEEEE
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTK-GVLRQI   67 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~-G~V~~~   67 (105)
                      ..++.+ .|..+++++.||+.    |  .|++||||++ |+|+..
T Consensus        85 ~~~~~~~~d~~~~l~~~y~v~----~--~Pt~~liD~~~G~Vi~~  123 (144)
T d1o8xa_          85 LAVPFAQSEAVQKLSKHFNVE----S--IPTLIGVDADSGDVVTT  123 (144)
T ss_dssp             EECCGGGHHHHHHHHHHTTCC----S--SSEEEEEETTTCCEEES
T ss_pred             cceeeecccchhhHHHHcCCC----c--CCEEEEEeCCCCEEEEE
Confidence            344433 45677899999987    4  6999999998 898754

>d1dbya_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=95.95  E-value=0.011  Score=34.97  Aligned_cols=54  Identities=17%  Similarity=0.368  Sum_probs=40.7

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +..|-.+ .|.+.+++++|++.    |  .|+.+++ ++|+.+..+.|..    +.+++.++|++.
T Consensus        51 ~~~~~~vd~d~~~~l~~~~~V~----~--~Pt~~~~-~~G~~v~~~~G~~----~~~~l~~~i~~~  105 (107)
T d1dbya_          51 KLKCVKLNTDESPNVASEYGIR----S--IPTIMVF-KGGKKCETIIGAV----PKATIVQTVEKY  105 (107)
T ss_dssp             TCEEEEEETTTCHHHHHHHTCC----S--SCEEEEE-SSSSEEEEEESCC----CHHHHHHHHHHH
T ss_pred             cceEEEEecccchhHHHHhccc----c--eEEEEEE-ECCeEEEEEeCCC----CHHHHHHHHHHh
Confidence            3444433 66778999999998    4  6999999 5899999888743    678888887763

>d1thxa_ c.47.1.1 (A:) Thioredoxin {Anabaena sp., pcc 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Anabaena sp., pcc 7120 [TaxId: 1167]

Probab=95.52  E-value=0.014  Score=34.44  Aligned_cols=52  Identities=21%  Similarity=0.229  Sum_probs=39.5

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      +.|--+ .|.+..++++|++.    +  .|+.+++. +|+++..+.|.    ++.+++.++|++
T Consensus        53 ~~~~~vd~d~~~~l~~~~~I~----~--~Pt~~~~~-~g~~v~~~~G~----~~~~~l~~~i~~  105 (108)
T d1thxa_          53 LKVVKLEIDPNPTTVKKYKVE----G--VPALRLVK-GEQILDSTEGV----ISKDKLLSFLDT  105 (108)
T ss_dssp             CEEEEEESTTCHHHHHHTTCC----S--SSEEEEEE-TTEEEEEEESC----CCHHHHHHHHHH
T ss_pred             ceeceecccccHHHHHHhccc----C--CCEEEEEE-CCEEEEEEeCC----CCHHHHHHHHHH
Confidence            444433 56788999999997    3  69888885 89999888874    367888888875

>d1fb6a_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin M [TaxId: 3562]

Probab=95.50  E-value=0.017  Score=33.82  Aligned_cols=48  Identities=15%  Similarity=0.232  Sum_probs=37.5

Q ss_pred             EEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         29 LLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        29 llsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      +-.|.+..++++||+.    |  .|+.+++ ++|+.+..+.|.    ++.+++.+.|++
T Consensus        55 v~~d~~~~l~~~~~V~----~--~Pt~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~  102 (104)
T d1fb6a_          55 LNTDEAPGIATQYNIR----S--IPTVLFF-KNGERKESIIGA----VPKSTLTDSIEK  102 (104)
T ss_dssp             EETTTCHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEEEC----CCHHHHHHHHHH
T ss_pred             Eecccchhhhhhccee----e--eeEEEEE-EcCeEEEEEeCC----CCHHHHHHHHHH
Confidence            4467788999999998    4  6876666 799999988874    367888888765

>d2fwha1 c.47.1.1 (A:428-544) Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thiol:disulfide interchange protein DsbD, C-terminal domain (DsbD-gamma)
species: Escherichia coli [TaxId: 562]

Probab=95.49  E-value=0.0028  Score=38.12  Aligned_cols=44  Identities=16%  Similarity=0.204  Sum_probs=33.1

Q ss_pred             cchHHhhhCCccccCCccceeEEEECCCCCEEEE--EeccCCCCCCHHHHHHHHHh
Q psy13875         34 KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQI--TVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        34 ~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~--~~~~~~~~~~~~eil~~l~~   87 (105)
                      +.++++.||+.    |  .|+++++|++|+++..  ..|    ..+.+++++.|++
T Consensus        71 ~~~l~~~~~v~----~--~Pt~~~~~~~G~~~~~~~~~G----~~~~~~~~~~l~~  116 (117)
T d2fwha1          71 DVALLKHLNVL----G--LPTILFFDGQGQEHPQARVTG----FMDAETFSAHLRD  116 (117)
T ss_dssp             HHHHHHHTTCC----S--SSEEEEECTTSCBCGGGCBCS----CCCHHHHHHHHHH
T ss_pred             HHHHHhhhehh----h--ceEEEEEeCCCcEEecccccc----cCCHHHHHHHHhc
Confidence            45788999987    4  6999999999987643  223    3578888888764

>d2es7a1 c.47.1.20 (A:7-125) Hydrogenase-1 operon protein HyaE {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.36  E-value=0.0078  Score=36.97  Aligned_cols=47  Identities=19%  Similarity=0.312  Sum_probs=34.5

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      .|.+.++++.||+.      ..|+.+++ ++|+.+..+.|.    .+.+++++.|+++
T Consensus        71 ~d~~~~l~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~l  117 (119)
T d2es7a1          71 LEQSEAIGDRFNVR------RFPATLVF-TDGKLRGALSGI----HPWAELLTLMRSI  117 (119)
T ss_dssp             HHHHHHHHHTTTCC------SSSEEEEE-SCC----CEESC----CCHHHHHHHHHHH
T ss_pred             CCCCHHHHHhcCcC------cceEEEEE-EcCeEEEEeeCC----CCHHHHHHHHHHH
Confidence            45678999999998      46988888 799999999874    3788888888765

>d2trxa_ c.47.1.1 (A:) Thioredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.016  Score=34.20  Aligned_cols=46  Identities=22%  Similarity=0.369  Sum_probs=36.1

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      .|.+..+++.||+.    |  .|+.+++ ++|+++..+.|.    ++.+++.++|++
T Consensus        60 ~d~~~~l~~~~~v~----~--~PT~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~  105 (108)
T d2trxa_          60 IDQNPGTAPKYGIR----G--IPTLLLF-KNGEVAATKVGA----LSKGQLKEFLDA  105 (108)
T ss_dssp             TTTCTTHHHHTTCC----S--SSEEEEE-ETTEEEEEEESC----CCHHHHHHHHHH
T ss_pred             ccchhhHHHHhCCC----c--EEEEEEE-ECCEEEEEEeCC----CCHHHHHHHHHH
Confidence            46778999999998    4  6866665 799999988874    367888888875

>d2hfda1 c.47.1.20 (A:1-132) Hydrogenase-1 operon protein HyaE {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: HyaE-like
domain: Hydrogenase-1 operon protein HyaE
species: Escherichia coli [TaxId: 562]

Probab=94.93  E-value=0.012  Score=36.79  Aligned_cols=49  Identities=16%  Similarity=0.308  Sum_probs=39.4

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhhh
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQF   90 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~~   90 (105)
                      .|.+.++++.||+.    +  .|+++++ ++|+.+..+.|.    ++.+++.+.|+.+-.
T Consensus        77 ~d~~~~la~~~~V~----~--~PT~~~~-~~G~~v~~~~G~----~~~~~l~~~i~~ll~  125 (132)
T d2hfda1          77 LEQSEAIGDRFGVF----R--FPATLVF-TGGNYRGVLNGI----HPWAELINLMRGLVE  125 (132)
T ss_dssp             HHHHHHHHHHHTCC----S--CCEEEEE-ETTEEEEEECCC----SCHHHHHHHHHHHHS
T ss_pred             ecCCHHHHHhhccC----c--ceeEEEE-EcCcEeeeecCC----CCHHHHHHHHHHHhC
Confidence            45678999999998    3  6988887 899999988764    478899988887653

>d1f9ma_ c.47.1.1 (A:) Thioredoxin {Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Spinach (Spinacia oleracea), thioredoxin F [TaxId: 3562]

Probab=94.68  E-value=0.044  Score=32.76  Aligned_cols=47  Identities=13%  Similarity=0.215  Sum_probs=36.8

Q ss_pred             eeC-cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         31 ADF-KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        31 sD~-~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      .|. +.++++.||+.    +  .|+.+++ ++|+++..+.|.     +.+++++.|++.+
T Consensus        64 ~~~~~~~l~~~~~V~----~--~Pt~~~~-k~G~~v~~~~G~-----~~~~l~e~i~~~~  111 (112)
T d1f9ma_          64 CNQENKTLAKELGIR----V--VPTFKIL-KENSVVGEVTGA-----KYDKLLEAIQAAR  111 (112)
T ss_dssp             CSSTTHHHHHHHCCS----S--SSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHHH
T ss_pred             ccccchhhHhheeec----c--CCEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHHcc
Confidence            343 56899999998    4  6998888 799999998862     5678888887654

>d1nw2a_ c.47.1.1 (A:) Thioredoxin {Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Alicyclobacillus acidocaldarius, formerly Bacillus acidocaldarius [TaxId: 405212]

Probab=94.63  E-value=0.026  Score=33.08  Aligned_cols=54  Identities=13%  Similarity=0.226  Sum_probs=39.4

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|--+ .|.+..++++|++.    |  .|+.+++ ++|+.+..+.|..    +.+++.+.|+++
T Consensus        49 ~~~~~~vd~~~~~~~~~~~~V~----~--~Pt~~~~-~~G~~~~~~~G~~----~~~~l~~~i~~~  103 (105)
T d1nw2a_          49 KVTVAKLNVDENPETTSQFGIM----S--IPTLILF-KGGEPVKQLIGYQ----PKEQLEAQLADV  103 (105)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCC----B--SSEEEEE-ETTEEEEEEESCC----CHHHHHHHTTTT
T ss_pred             ceEEEEEECCCCcccHHHCCcc----e--eeEEEEE-ECCEEEEEEECCC----CHHHHHHHHHHH
Confidence            3455433 55678999999998    4  6888777 6899998888743    577777777664

>d2ifqa1 c.47.1.1 (A:1-105) Thioredoxin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.40  E-value=0.081  Score=30.92  Aligned_cols=46  Identities=13%  Similarity=0.093  Sum_probs=35.7

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      .|.+..+++.||+.      ..|+.+++ ++|+.+..+.|.     +.+++.+.|+++
T Consensus        59 ~d~~~~~~~~~~V~------~~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~i~~~  104 (105)
T d2ifqa1          59 VDDCQDVASECEVK------CMPTFQFF-KKGQKVGEFSGA-----NKEKLEATINEL  104 (105)
T ss_dssp             TTTCHHHHHHTTCC------BSSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHHH
T ss_pred             cccCHhHHHHcCce------EEEEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHhh
Confidence            55678999999987      36988888 799999988862     467777777654

>d1xfla_ c.47.1.1 (A:) Thioredoxin {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.15  E-value=0.1  Score=31.06  Aligned_cols=52  Identities=12%  Similarity=0.273  Sum_probs=37.4

Q ss_pred             CCCce-EEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         24 DLKYP-LLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        24 ~l~fp-llsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      ++.|- +-.|.+..++++||+.    |  .|+.+++ ++|+++..+.|.     +.+++.+.|++
T Consensus        59 ~~~~~~vd~~~~~~l~~~~~V~----~--~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~i~k  111 (114)
T d1xfla_          59 NVLFLKVDTDELKSVASDWAIQ----A--MPTFMFL-KEGKILDKVVGA-----KKDELQSTIAK  111 (114)
T ss_dssp             SEEEEEEETTTSHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHH
T ss_pred             ccceeEEEeeeceeecccccee----e--eEEEEEE-ECCEEEEEEeCc-----CHHHHHHHHHH
Confidence            34443 3355678999999987    4  6877777 899999988762     46777777754

>d2f8aa1 c.47.1.10 (A:12-195) Glutathione peroxidase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Glutathione peroxidase-like
domain: Glutathione peroxidase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.02  E-value=0.031  Score=36.84  Aligned_cols=31  Identities=13%  Similarity=0.203  Sum_probs=21.1

Q ss_pred             eEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         54 GLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        54 atfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +.||||++|+|+..+....    +.+++.+.|++|
T Consensus       152 tKFLIdr~G~vv~rf~~~~----~p~~i~~~Ie~l  182 (184)
T d2f8aa1         152 EKFLVGPDGVPLRRYSRRF----QTIDIEPDIEAL  182 (184)
T ss_dssp             CEEEECTTSCEEEEECTTS----CGGGGHHHHHHH
T ss_pred             EEEEECCCCCEEEEECCCC----CHHHHHHHHHHH
Confidence            6799999999998886433    233455555543

>d1xwaa_ c.47.1.1 (A:) Thioredoxin {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.95  E-value=0.12  Score=30.36  Aligned_cols=49  Identities=16%  Similarity=0.254  Sum_probs=35.2

Q ss_pred             ceEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         27 YPLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        27 fpllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      +-+-.|.+..+++.||+.    +  .|+.+++ ++|+++..+.|.     +.+++.+.|++
T Consensus        61 ~~i~~d~~~~l~~~~~V~----~--~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~I~~  109 (111)
T d1xwaa_          61 LKVDVDECEDIAMEYNIS----S--MPTFVFL-KNGVKVEEFAGA-----NAKRLEDVIKA  109 (111)
T ss_dssp             EEEETTTCHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHH
T ss_pred             EEEEeecCcchhhcCCCc----c--ccEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHh
Confidence            334466778999999997    3  6876666 799999988763     44566666653

>d1fo5a_ c.47.1.1 (A:) MJ0307, thioredoxin/glutaredoxin-like protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MJ0307, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.82  E-value=0.023  Score=32.01  Aligned_cols=45  Identities=13%  Similarity=0.248  Sum_probs=31.4

Q ss_pred             eEEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         28 PLLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        28 pllsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      .+-.|.+.+++++||+.    |  .|+ ++++++|++    +|.    ++.+++++.|++
T Consensus        39 ~~~~d~~~~la~~~~V~----~--~Pt-~~i~~~g~~----~G~----~~~~~l~~~i~~   83 (85)
T d1fo5a_          39 YINVMENPQKAMEYGIM----A--VPT-IVINGDVEF----IGA----PTKEALVEAIKK   83 (85)
T ss_dssp             EEESSSSCCTTTSTTTC----C--SSE-EEETTEEEC----CSS----SSSHHHHHHHHH
T ss_pred             cccccccccccccCCce----E--eeE-EEEECCcEE----ECC----CCHHHHHHHHHh
Confidence            34456778999999997    4  576 677888752    342    366778887765

>d1r26a_ c.47.1.1 (A:) Thioredoxin {Trypanosoma brucei [TaxId: 5691]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Trypanosoma brucei [TaxId: 5691]

Probab=92.42  E-value=0.13  Score=30.64  Aligned_cols=53  Identities=19%  Similarity=0.274  Sum_probs=38.4

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|--+ .|.+.++++.||+.    +  .|+.+++ ++|+.+..+.|.     +.+.+.+.|+++
T Consensus        57 ~v~~~~vd~d~~~~l~~~~~V~----~--~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~l~~~  110 (113)
T d1r26a_          57 TVKFAKVDADNNSEIVSKCRVL----Q--LPTFIIA-RSGKMLGHVIGA-----NPGMLRQKLRDI  110 (113)
T ss_dssp             TSEEEEEETTTCHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHHH
T ss_pred             cccccccccccchhhHHHcccc----C--CCEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHHH
Confidence            5666555 56678999999997    4  5876666 899999988862     445666666554

>d1ep7a_ c.47.1.1 (A:) Thioredoxin {Chlamydomonas reinhardtii [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Chlamydomonas reinhardtii [TaxId: 3055]

Probab=92.41  E-value=0.13  Score=30.51  Aligned_cols=53  Identities=17%  Similarity=0.244  Sum_probs=38.6

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|--+ .|.+..++++||+.    +  .|+.+++ ++|+.+..+.|     .+.+++.++|++.
T Consensus        56 ~v~~~~vd~d~~~~l~~~~~v~----~--~Pt~~~~-~~G~~v~~~~G-----~~~~~l~~~i~k~  109 (112)
T d1ep7a_          56 KVIFLKVDVDAVAAVAEAAGIT----A--MPTFHVY-KDGVKADDLVG-----ASQDKLKALVAKH  109 (112)
T ss_dssp             TSEEEEEETTTTHHHHHHHTCC----B--SSEEEEE-ETTEEEEEEES-----CCHHHHHHHHHHH
T ss_pred             eEEEEEeecccccccccccccc----C--CCEEEEE-ECCEEEEEEeC-----cCHHHHHHHHHHH
Confidence            3555443 56678999999987    3  5876666 79999998876     2577887777664

>d1syra_ c.47.1.1 (A:) Thioredoxin {Malarial parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: Malarial parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=91.97  E-value=0.14  Score=29.63  Aligned_cols=52  Identities=8%  Similarity=0.136  Sum_probs=36.4

Q ss_pred             CCCce-EEeeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         24 DLKYP-LLADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        24 ~l~fp-llsD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      +..|- +-.|.+.+++++||+.    +  .|+.++. ++|+.+..+.|.     +.+++.+.|++
T Consensus        49 ~~~~~~vd~d~~~~~~~~~~V~----~--~Pt~i~~-k~G~~v~~~~G~-----~~~~l~~~i~k  101 (103)
T d1syra_          49 KMVFIKVDVDEVSEVTEKENIT----S--MPTFKVY-KNGSSVDTLLGA-----NDSALKQLIEK  101 (103)
T ss_dssp             TSEEEEEETTTTHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEESC-----CHHHHHHHHHT
T ss_pred             ceEEEeeccccCcceeeeeeee----c--ceEEEEE-ECCEEEEEEeCc-----CHHHHHHHHHh
Confidence            34443 3356678999999997    4  6865555 799999988762     45677777765

>d1gh2a_ c.47.1.1 (A:) Thioredoxin-like protein, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin-like protein, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.36  E-value=0.21  Score=29.39  Aligned_cols=52  Identities=6%  Similarity=-0.040  Sum_probs=37.8

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      ++.|--+ .|.+.++++.||+.    +  .|+.++. ++|+.+..+.|.     +.+++.+.|++
T Consensus        52 ~~~f~~vd~d~~~~l~~~~~v~----~--~Pt~~~~-~~G~~v~~~~G~-----~~~~l~~~i~k  104 (107)
T d1gh2a_          52 QAVFLEVDVHQCQGTAATNNIS----A--TPTFQFF-RNKVRIDQYQGA-----DAVGLEEKIKQ  104 (107)
T ss_dssp             TSEEEEEETTTSHHHHHHTTCC----S--SSEEEEE-ETTEEEEEEESS-----CHHHHHHHHHH
T ss_pred             cccccccccccchhhhhhcCce----e--ceEEEEE-ECCEEEEEEeCC-----CHHHHHHHHHH
Confidence            4444333 56678999999997    3  6877777 899999988862     56777777655

>d1ti3a_ c.47.1.1 (A:) Thioredoxin {European aspen (Populus tremula), thioredoxin H [TaxId: 113636]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Thioredoxin
species: European aspen (Populus tremula), thioredoxin H [TaxId: 113636]

Probab=90.43  E-value=0.14  Score=30.22  Aligned_cols=53  Identities=19%  Similarity=0.292  Sum_probs=37.1

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      +..|-.+ .|.+..++++||+.    +  .|+.++. ++|+.+..+.|.     +.+++.+.|++.
T Consensus        57 ~~~~~~vd~d~~~~l~~~~~I~----~--~Pt~~~~-k~G~~v~~~~G~-----~~~~l~~~i~k~  110 (113)
T d1ti3a_          57 NVTFLKVDVDELKAVAEEWNVE----A--MPTFIFL-KDGKLVDKTVGA-----DKDGLPTLVAKH  110 (113)
T ss_dssp             SEEEEEEETTTCHHHHHHHHCS----S--TTEEEEE-ETTEEEEEEECC-----CTTHHHHHHHHH
T ss_pred             CceEEeeeeeccccccccCeec----c--cceEEEE-ECCEEEEEEcCC-----CHHHHHHHHHHH
Confidence            3344333 45678999999987    4  6877777 699999988862     345677777653

>d2dlxa1 c.47.1.24 (A:1-147) UBX domain-containing protein 7 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: UAS domain
domain: UBX domain-containing protein 7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.98  E-value=0.19  Score=31.45  Aligned_cols=44  Identities=18%  Similarity=0.104  Sum_probs=33.0

Q ss_pred             chHHhhhCCccccCCccceeEEEECC-CCCEEEEEeccCCCCCCHHHHHHHHHhhh
Q psy13875         35 KEIATSYGVLIESAGIPLRGLFIIDT-KGVLRQITVNDLPVGRSVEEVLRLVKAFQ   89 (105)
Q Consensus        35 ~~vak~ygv~~~~~G~~~ratfiID~-~G~V~~~~~~~~~~~~~~~eil~~l~~l~   89 (105)
                      ..+++.|++.    |  .|+.+|||+ .|+++..+-     ..+.++++..|+..-
T Consensus        91 ~~~~~~y~v~----~--~Pti~~idp~~ge~v~~~~-----~~~~~~fl~~L~~fl  135 (147)
T d2dlxa1          91 QRYIQFYKLG----D--FPYVSILDPRTGQKLVEWH-----QLDVSSFLDQVTGFL  135 (147)
T ss_dssp             HHHHHHHTCC----S--SSEEEEECTTTCCCCEEES-----SCCHHHHHHHHHHHH
T ss_pred             hhhhhheecC----c--eeEEEEEeCCCCeEecccC-----CCCHHHHHHHHHHHH
Confidence            5788999987    4  699999997 588876552     236788888877643

>d1nhoa_ c.47.1.1 (A:) MTH807, thioredoxin/glutaredoxin-like protein {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: MTH807, thioredoxin/glutaredoxin-like protein
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=88.89  E-value=0.35  Score=26.95  Aligned_cols=49  Identities=20%  Similarity=0.316  Sum_probs=32.9

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      ++.|-.+ .|.+.+++++||+.    |  .|+ +++|.+|  +  +.|.    ++.+++.+.|++
T Consensus        33 ~v~~~~vd~d~~~~l~~~~~V~----~--~Pt-~~~~~~~--~--~~G~----~~~~~l~~~i~~   82 (85)
T d1nhoa_          33 KIDVEKIDIMVDREKAIEYGLM----A--VPA-IAINGVV--R--FVGA----PSREELFEAIND   82 (85)
T ss_dssp             SCCEEEECTTTCGGGGGGTCSS----C--SSE-EEETTTE--E--EECS----SCCHHHHHHHHH
T ss_pred             cccccccccccchhhHHhcCce----E--eCE-EEECCcE--E--EEcC----CCHHHHHHHHHH
Confidence            4566655 56778999999998    4  585 5665544  3  3442    367778877765

>d1hyua4 c.47.1.2 (A:103-198) Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Alkyl hydroperoxide reductase subunit F (AhpF), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=88.47  E-value=0.37  Score=27.66  Aligned_cols=48  Identities=17%  Similarity=0.245  Sum_probs=33.3

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHH
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVK   86 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~   86 (105)
                      ++.|-.+ .|.+.++++.||+.    +  .|+.|+   +|..+  +.|.    ++.+++++.|+
T Consensus        46 ~i~~~~vd~~~~~~l~~~~~I~----~--vPt~~~---ng~~~--~~G~----~~~~~l~~~le   94 (96)
T d1hyua4          46 RIKHTAIDGGTFQNEITERNVM----G--VPAVFV---NGKEF--GQGR----MTLTEIVAKVD   94 (96)
T ss_dssp             TEEEEEEETTTCHHHHHHTTCC----S--SSEEEE---TTEEE--EESC----CCHHHHHHHHC
T ss_pred             ceEEEEEecccchHHHhhcccc----c--ccEEEE---CCEEE--EecC----CCHHHHHHHHh
Confidence            5666655 34567999999997    4  688655   67665  4453    47888888774

>d2b5ea4 c.47.1.2 (A:23-141) Protein disulfide isomerase, PDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.09  E-value=0.19  Score=29.90  Aligned_cols=56  Identities=9%  Similarity=0.180  Sum_probs=37.8

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|--+ +|.+.+++++|++.    +  .|+.+++ ++|.......+..  .++.++++++|++.
T Consensus        60 ~v~~~~vd~~~~~~l~~~~~v~----~--~Pti~~f-~~g~~~~~~~y~g--~~~~~~l~~fi~k~  116 (119)
T d2b5ea4          60 NITLAQIDCTENQDLCMEHNIP----G--FPSLKIF-KNSDVNNSIDYEG--PRTAEAIVQFMIKQ  116 (119)
T ss_dssp             TCEEEEEETTTCHHHHHHTTCC----S--SSEEEEE-ETTCTTCEEECCS--CCSHHHHHHHHHHH
T ss_pred             ceeeeeeeccchHHHHHHhccc----c--CCeEEEE-ECCEEeeeEEecC--CCCHHHHHHHHHHh
Confidence            4555444 45678999999987    3  6988888 6665443332221  35889999998764

>d1zmaa1 c.47.1.1 (A:1-115) Bacterocin transport accessory protein Bta {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Thioltransferase
domain: Bacterocin transport accessory protein Bta
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=86.61  E-value=0.48  Score=27.74  Aligned_cols=40  Identities=20%  Similarity=0.395  Sum_probs=29.9

Q ss_pred             chHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHH
Q psy13875         35 KEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLV   85 (105)
Q Consensus        35 ~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l   85 (105)
                      ..+++.||+.    +  .|+.+++ ++|++..++.|..    ..+++.+.|
T Consensus        74 ~~~~~~~~V~----~--~PTli~~-~~gk~~~~~~G~~----~~~el~~fl  113 (115)
T d1zmaa1          74 QAFRSRYGIP----T--VPGFVHI-TDGQINVRCDSSM----SAQEIKDFA  113 (115)
T ss_dssp             HHHHHHHTCC----S--SCEEEEE-ETTEEEEECCTTC----CHHHHHHHH
T ss_pred             cccccccccc----c--ccEEEEE-ECCEEEEEEcCCC----CHHHHHHHH
Confidence            3688899987    3  6998888 5899988777643    567776665

>d1a8ya1 c.47.1.3 (A:3-126) Calsequestrin {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: Calsequestrin
domain: Calsequestrin
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=84.40  E-value=0.58  Score=27.75  Aligned_cols=53  Identities=8%  Similarity=0.194  Sum_probs=37.4

Q ss_pred             CCCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHhh
Q psy13875         24 DLKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        24 ~l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      ++.|--+ ++.+.++++.|++.    |  .|+.+++. +|+++ .+.|    .++.+.++++|..+
T Consensus        67 ~v~~a~Vd~~~~~~l~~~~~I~----~--yPTi~~f~-~g~~~-~y~G----~r~~~~l~~fi~~~  120 (124)
T d1a8ya1          67 GVGFGLVDSEKDAAVAKKLGLT----E--EDSIYVFK-EDEVI-EYDG----EFSADTLVEFLLDV  120 (124)
T ss_dssp             TEEEEEEETTTSHHHHHTTTCC----S--TTCEEEEE-SSSEE-ECCS----CCSHHHHHHHHHHH
T ss_pred             CeEEEEEEeecccchhhccccc----c--CCcEEEec-cCccE-EeeC----CCCHHHHHHHHHHh
Confidence            3445443 55678999999998    4  69999995 67664 2322    57899999988654

>d1qgva_ c.47.1.8 (A:) spliceosomal protein U5-15Kd {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: spliceosomal protein U5-15Kd
domain: spliceosomal protein U5-15Kd
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.11  E-value=0.84  Score=28.03  Aligned_cols=64  Identities=8%  Similarity=0.048  Sum_probs=42.2

Q ss_pred             CCceEE-eeCcchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCC------CCCHHHHHHHHHhhhhhhhcC
Q psy13875         25 LKYPLL-ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPV------GRSVEEVLRLVKAFQFVDKHG   95 (105)
Q Consensus        25 l~fpll-sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~------~~~~~eil~~l~~l~~~~~~~   95 (105)
                      +.|-.+ .|.+.++++.|++.    |  .|+.++. ++|+......|..+.      -.+.+++++.++.+......|
T Consensus        55 v~~~~VDvd~~~~la~~~~I~----~--~PT~~~f-~~g~~i~~~~g~~~~~k~~~~l~~~~~~i~~ie~i~~~~~~g  125 (137)
T d1qgva_          55 AVIYLVDITEVPDFNKMYELY----D--PCTVMFF-FRNKHIMIDLGTGNNNKINWAMEDKQEMVDIIETVYRGARKG  125 (137)
T ss_dssp             EEEEEEETTTCCTTTTSSCSC----S--SCEEEEE-ETTEEEEEECC------CCSCCSCHHHHHHHHHHHHHHHTTT
T ss_pred             ceEEEeeccccchhhhhcCee----e--EEEEEEE-eCCcEEEEEecCCCcceeeeehhhhHHHHHHHHHHHHHHhhC
Confidence            455433 56678999999998    3  6888888 788877777653211      136788888888765444443

>d1u07a_ d.212.1.2 (A:) TonB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: TolA/TonB C-terminal domain
superfamily: TolA/TonB C-terminal domain
family: TonB
domain: TonB
species: Escherichia coli [TaxId: 562]

Probab=81.49  E-value=1.2  Score=25.20  Aligned_cols=50  Identities=12%  Similarity=0.228  Sum_probs=33.9

Q ss_pred             hHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCC-CCCCHHHHHHHHHhhhh
Q psy13875         36 EIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLP-VGRSVEEVLRLVKAFQF   90 (105)
Q Consensus        36 ~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~-~~~~~~eil~~l~~l~~   90 (105)
                      ..++.-|+.    | .....|.||++|+|..+.+-... ...--++.+++++.++.
T Consensus        16 ~~A~~~g~e----G-~V~v~f~I~~~G~v~~~~v~~ssg~~~ld~aa~~av~~~~f   66 (90)
T d1u07a_          16 ARAQALRIE----G-QVKVKFDVTPDGRVDNVQILSAKPANMFEREVKNAMRRWRY   66 (90)
T ss_dssp             HHHHHHTCC----E-EEEEEEEECTTSCEEEEEEEEEESSSSSHHHHHHHHTTCEE
T ss_pred             HHHHHCCCe----E-EEEEEEEEeCCCCEeEEEEEECCCchHHHHHHHHHHHhCCC
Confidence            455666654    5 47889999999999998874322 12235667788877653

>d2c0ga2 c.47.1.7 (A:1024-1145) Windbeutel, N-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: ERP29 N domain-like
domain: Windbeutel, N-terminal domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=80.68  E-value=2  Score=25.17  Aligned_cols=48  Identities=15%  Similarity=0.218  Sum_probs=33.1

Q ss_pred             cchHHhhhCCccccCCccceeEEEECCCCCEEEEEeccCCCCCCHHHHHHHHHh
Q psy13875         34 KKEIATSYGVLIESAGIPLRGLFIIDTKGVLRQITVNDLPVGRSVEEVLRLVKA   87 (105)
Q Consensus        34 ~~~vak~ygv~~~~~G~~~ratfiID~~G~V~~~~~~~~~~~~~~~eil~~l~~   87 (105)
                      +.++++.|++..    ...|+.+++...+... ..+ .....++.++++++|++
T Consensus        68 n~~l~~~~~i~~----~~~PTi~~f~~g~~~~-~~~-~~~g~rt~~~l~~fv~~  115 (122)
T d2c0ga2          68 NKALGDRYKVDD----KNFPSIFLFKGNADEY-VQL-PSHVDVTLDNLKAFVSA  115 (122)
T ss_dssp             THHHHHHTTCCT----TSCCEEEEESSSSSSE-EEC-CTTSCCCHHHHHHHHHH
T ss_pred             CHHHHHHhhccc----CCCCcEEEEeCCcccc-ccc-ccCCCCCHHHHHHHHHH
Confidence            578999999852    2469999996554432 222 23346789999999875

>d1meka_ c.47.1.2 (A:) Protein disulfide isomerase, PDI {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Thioredoxin fold
superfamily: Thioredoxin-like
family: PDI-like
domain: Protein disulfide isomerase, PDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.14  E-value=0.44  Score=27.87  Aligned_cols=47  Identities=21%  Similarity=0.367  Sum_probs=32.4

Q ss_pred             eeCcchHHhhhCCccccCCccceeEEEECCCCCEE--EEEeccCCCCCCHHHHHHHHHhh
Q psy13875         31 ADFKKEIATSYGVLIESAGIPLRGLFIIDTKGVLR--QITVNDLPVGRSVEEVLRLVKAF   88 (105)
Q Consensus        31 sD~~~~vak~ygv~~~~~G~~~ratfiID~~G~V~--~~~~~~~~~~~~~~eil~~l~~l   88 (105)
                      .|.+..+++.|++.    |  .|+.+++ ++|+..  ..+.|    .++.++++++|++.
T Consensus        67 ~~~~~~l~~~~~i~----~--~Pt~~~~-~~G~~~~~~~~~g----~~~~~~l~~fi~~~  115 (120)
T d1meka_          67 ATEESDLAQQYGVR----G--YPTIKFF-RNGDTASPKEYTA----GREADDIVNWLKKR  115 (120)
T ss_dssp             TTTCCSSHHHHTCC----S--SSEEEEE-ESSCSSSCEECCC----CSSHHHHHHHHHTT
T ss_pred             cccchhHHHHhCCc----c--CCeEEEE-ECCeEeeeEEecC----CCCHHHHHHHHHHh
Confidence            45678999999987    4  6988777 455332  22332    45899999999763