Psyllid ID: psy13892

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------63
MYRCALIGDIEKAFLNVGLNEGERDYTRILWVKDVAKPLDSDNVVVLRHTRLPFGVVSSPFLLSCVIRTHLDKYSGDYIDQLKNNIYMDNILCGVNNEEEIENFVGTARKVFSDASLNLREWASNYPSVLIGTLSPELVNTSRVQNTLGMLWDTQEDTLSLKFHYEYKQGIICKRLLLSVLASFFDILGLWTPIIMSLKLLVQSAWIQKKEWDDELDSKDKEKFLEIVDSMNFVSNIPVARYFDVPNNHDDQSVRYELHAFSDACSYSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINIDKCYLWIDNQCVIHWLTGNKVLPTFVNNRVKEIKASVFPIVYKYIPTDSNPADLACRGSSAVDLQGNKLWWEGPGFLALGTWPDFPFQCKSICEEVTVDNGHDEVNLVSKCEEKLQPISPLNIDEQRYSSFKKLVNVTCYVKKFINLCRKRSEFKGPISLEEFSGSKTEWLKYAQEKYFPSTVEKLKQGLSDPIATQLGLELNDEGLLICKGRFRELRYDGRKVFPILLPRRCHLTNIIVTDVHRACFHNGASQTLATLRLDYWITQGRSAVKQILKSCVNCKRFRQGPYKQPEFSFYP
cccEEEEHHHHHHHccccccccccccEEEEEccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHHcccHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHccccccccccccccccccccEEccccccEEEEEEcccccccccHHHHccccccEEccccccccEEEEHHHHHcccccccccccccccHHHHHHHHHHHHcccccccccEEEEcccccccccccccEEEEEEEccccccEEEEEEEEEEcccccEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccccEEEEEccccccccHHHHHHHHHHHccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccHHccccHHHHHHHHHHHcccHHHHHHHHccccccccccccccccccccEEEccccccccccccccccccccccccccHHHHHHHHHccccccHHHHHHHHHHHccccccHHHHHHHHccccccccccccccccccccccc
cccEEEEEcHHHHHHHccccHccccEEEEEEccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHcccHHHHHHHHHccEccEEEccccHHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHcccHHcccccccEEEEEEEEcccccEEEEEEccccccccccHHHHHHHHHHHcccHcHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHcccccEEEcEEEcccccccccccEEEEEEEEcccHHHEEEEEEEEEEcccccEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccHHEHHHHccccccHHHHHHHHHHHHHcccccccEEcccccccHcHccccccHHHHHcccccccccccccccccccccccccccccHHHHHccccccEEEEEEEccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEccccccccccHcccccEEEccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
MYRCALIGDIEKAFLNVglnegerdyTRILWVKdvakpldsdnvvvlrhtrlpfgvvsspflLSCVIRthldkysgDYIDQLKnniymdnilcgvnneeEIENFVGTARKVFSDASLNLrewasnypsvligtlspelvnTSRVQNTLGMLWDTQEDTLSLKFHYEYKQGIICKRLLLSVLASFFDILGLWTPIIMSLKLLVQSAWIQKkewddeldskdKEKFLEIVDSmnfvsnipvaryfdvpnnhddqsvrYELHAFSDACSYSYASVVYLRSVshsgdirtNIVFaksrvaptnkptlprLELLGALIAYRSLKFVKnslhinidkcylwidNQCVIHwltgnkvlptfVNNRVKEIKASVFPivykyiptdsnpadlacrgssavdlqgnklwwegpgflalgtwpdfpfqcksiceevtvdnghdevnLVSKceeklqpisplnideQRYSSFKKLVNVTCYVKKFINLCRKrsefkgpisleefsgSKTEWLKYAQEKYFPSTVEKLKQglsdpiatqlglelndeglLICKGRFrelrydgrkvfpillprrchltniIVTDVHracfhngasqTLATLRLDYWITQGRSAVKQILKSCVnckrfrqgpykqpefsfyp
myrcaligdIEKAFLNVGLNEGERDYTRILWVKDVAKPLDSDNVVVLRHTrlpfgvvsspfLLSCVIRTHLDKYSGDYIDQLKNNIYMDNILCGVNNEEEIENFVGTARKVFSDASLNLREWASNYPSVLIGTLSPELVNTSRVQNTLGMLWDTQEDTLSLKFHYEYKQGIICKRLLLSVLASFFDILGLWTPIIMSLKLLVQSAWIQKkewddeldskDKEKFLEIVDSMNFVSNIPVARYFDVPNNHDDQSVRYELHAFSDACSYSYASVVYLRSVSHSGDIRTNIvfaksrvaptnkptlprLELLGALIAYRSLKFVKNSLHINIDKCYLWIDNQCVIHWLTGNKVLPTFVNNRVKEIKASVFPIVYKYIPTDSNPADLACRGSSAVDLQGNKLWWEGPGFLALGTWPDFPFQCKSICEEVTVDNGHDEVNLVSKCeeklqpisplnideqRYSSFKKLVNVTCYVKKFINLCrkrsefkgpisleefsgskTEWLKYAQEKYFPSTVEKLKQGLSDPIATQlglelndegLLICKGRFRELRYDgrkvfpillprrCHLTNIIVTDVHRACFHNGASQTLATLRLDYWITQGRSAVKQILKSCVnckrfrqgpykqpefsfyp
MYRCALIGDIEKAFLNVGLNEGERDYTRILWVKDVAKPLDSDNVVVLRHTRLPFGVVSSPFLLSCVIRTHLDKYSGDYIDQLKNNIYMDNILCGVNNEEEIENFVGTARKVFSDASLNLREWASNYPSVLIGTLSPELVNTSRVQNTLGMLWDTQEDTLSLKFHYEYKQGIICKRLLLSVLASFFDILGLWTPIIMSLKLLVQSAWIQKKEWDDELDSKDKEKFLEIVDSMNFVSNIPVARYFDVPNNHDDQSVRYELHAFSDACSYSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINIDKCYLWIDNQCVIHWLTGNKVLPTFVNNRVKEIKASVFPIVYKYIPTDSNPADLACRGSSAVDLQGNKLWWEGPGFLALGTWPDFPFQCKSICEEVTVDNGHDEVNLVSKCEEKLQPISPLNIDEQRYSSFKKLVNVTCYVKKFINLCRKRSEFKGPISLEEFSGSKTEWLKYAQEKYFPSTVEKLKQGLSDPIATQLGLELNDEGLLICKGRFRELRYDGRKVFPILLPRRCHLTNIIVTDVHRACFHNGASQTLATLRLDYWITQGRSAVKQILKSCVNCKRFRQGPYKQPEFSFYP
**RCALIGDIEKAFLNVGLNEGERDYTRILWVKDVAKPLDSDNVVVLRHTRLPFGVVSSPFLLSCVIRTHLDKYSGDYIDQLKNNIYMDNILCGVNNEEEIENFVGTARKVFSDASLNLREWASNYPSVLIGTLSPELVNTSRVQNTLGMLWDTQEDTLSLKFHYEYKQGIICKRLLLSVLASFFDILGLWTPIIMSLKLLVQSAWIQKKEWDDELDSKDKEKFLEIVDSMNFVSNIPVARYFDVPNNHDDQSVRYELHAFSDACSYSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINIDKCYLWIDNQCVIHWLTGNKVLPTFVNNRVKEIKASVFPIVYKYIPTDSNPADLACRGSSAVDLQGNKLWWEGPGFLALGTWPDFPFQCKSICEEVTVDNGHDEVNLVSKCEEKLQPISPLNIDEQRYSSFKKLVNVTCYVKKFINLCRKRSEFKGPISLEEFSGSKTEWLKYAQEKYFPSTVEKLKQGLSDPIATQLGLELNDEGLLICKGRFRELRYDGRKVFPILLPRRCHLTNIIVTDVHRACFHNGASQTLATLRLDYWITQGRSAVKQILKSCVNCKRFRQ************
MYRCALIGDIEKAFLNVGLNEGERDYTRILWVKDVAKPLDSDNVVVLRHTRLPFGVVSSPFLLSCVIRTHLDKYSGDYIDQLKNNIYMDNILCGVNNEEEIENFVGTARKVFSDASLNLREWASNYPSVLI*TLSPELVNTSRVQNTLGMLWDTQEDTLSLKFHYEYKQGIICKRLLLSVLASFFDILGLWTPIIMSLKLLVQSAWIQKKEWDDELDSKDKEKFLEIVDSMNFVSNIPVARYFDVPNNHDDQSVRYELHAFSDACSYSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINIDKCYLWIDNQCVIHWLTGNKVLPTFVNNRVKEIKASVFPIVYKYIPTDSNPADLACRGSSAVDLQGNKLWWEGPGFLALGTWPDFPFQCKSICEEVTVDNGHDEVNLVSKCEEKLQPISPLNIDEQRYSSFKKLVNVTCYVKKFINLCRKRSEFKGPISLEEFSGSKTEWLKYAQEKYFPSTVEKLKQGLSDPIATQLGLELNDEGLLICKGRFRELRYDGRKVFPILLPRRCHLTNIIVTDVHRACFHNGASQTLATLRLDYWITQGRSAVKQILKSCVNCKRFRQGPYKQPEFSFYP
MYRCALIGDIEKAFLNVGLNEGERDYTRILWVKDVAKPLDSDNVVVLRHTRLPFGVVSSPFLLSCVIRTHLDKYSGDYIDQLKNNIYMDNILCGVNNEEEIENFVGTARKVFSDASLNLREWASNYPSVLIGTLSPELVNTSRVQNTLGMLWDTQEDTLSLKFHYEYKQGIICKRLLLSVLASFFDILGLWTPIIMSLKLLVQSAWIQKKEWDDELDSKDKEKFLEIVDSMNFVSNIPVARYFDVPNNHDDQSVRYELHAFSDACSYSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINIDKCYLWIDNQCVIHWLTGNKVLPTFVNNRVKEIKASVFPIVYKYIPTDSNPADLACRGSSAVDLQGNKLWWEGPGFLALGTWPDFPFQCKSICEEVTVDNGHDEVNLVSKCEEKLQPISPLNIDEQRYSSFKKLVNVTCYVKKFINLCRKRSEFKGPISLEEFSGSKTEWLKYAQEKYFPSTVEKLKQGLSDPIATQLGLELNDEGLLICKGRFRELRYDGRKVFPILLPRRCHLTNIIVTDVHRACFHNGASQTLATLRLDYWITQGRSAVKQILKSCVNCKRFRQGPYKQPEFSFYP
MYRCALIGDIEKAFLNVGLNEGERDYTRILWVKDVAKPLDSDNVVVLRHTRLPFGVVSSPFLLSCVIRTHLDKYSGDYIDQLKNNIYMDNILCGVNNEEEIENFVGTARKVFSDASLNLREWASNYPSVLIGTLSPELVNTSRVQNTLGMLWDTQEDTLSLKFHYEYKQGIICKRLLLSVLASFFDILGLWTPIIMSLKLLVQSAWIQKKEWDDELDSKDKEKFLEIVDSMNFVSNIPVARYFDVPNNHDDQSVRYELHAFSDACSYSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINIDKCYLWIDNQCVIHWLTGNKVLPTFVNNRVKEIKASVFPIVYKYIPTDSNPADLACRGSSAVDLQGNKLWWEGPGFLALGTWPDFPFQCKSICEEVTV*NGHDEVNLVSKCEEKLQPISPLNIDEQRYSSFKKLVNVTCYVKKFINLCRKRSEFKGPISLEEFSGSKTEWLKYAQEKYFPSTVEKLKQGLSDPIATQLGLELNDEGLLICKGRFRELRYDGRKVFPILLPRRCHLTNIIVTDVHRACFHNGASQTLATLRLDYWITQGRSAVKQILKSCVNCKRFRQGPYKQPE***Y*
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MYRCALIGDIEKAFLNVGLNEGERDYTRILWVKDVAKPLDSDNVVVLRHTRLPFGVVSSPFLLSCVIRTHLDKYSGDYIDQLKNNIYMDNILCGVNNEEEIENFVGTARKVFSDASLNLREWASNYPSVLIGTLSPELVNTSRVQNTLGMLWDTQEDTLSLKFHYEYKQGIICKRLLLSVLASFFDILGLWTPIIMSLKLLVQSAWIQKKEWDDELDSKDKEKFLEIVDSMNFVSNIPVARYFDVPNNHDDQSVRYELHAFSDACSYSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINIDKCYLWIDNQCVIHWLTGNKVLPTFVNNRVKEIKASVFPIVYKYIPTDSNPADLACRGSSAVDLQGNKLWWEGPGFLALGTWPDFPFQCKSICEEVTVDNGHDEVNLVSKCEEKLQPISPLNIDEQRYSSFKKLVNVTCYVKKFINLCRKRSEFKGPISLEEFSGSKTEWLKYAQEKYFPSTVEKLKQGLSDPIATQLGLELNDEGLLICKGRFRELRYDGRKVFPILLPRRCHLTNIIVTDVHRACFHNGASQTLATLRLDYWITQGRSAVKQILKSCVNCKRFRQGPYKQPEFSFYP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query628
291231886 1091 PREDICTED: Pao retrotransposon peptidase 0.966 0.556 0.339 6e-95
291230224 1605 PREDICTED: Pao retrotransposon peptidase 0.961 0.376 0.341 2e-94
291222018 1559 PREDICTED: Pao retrotransposon peptidase 0.936 0.377 0.344 2e-91
170581346 1756 Pao retrotransposon peptidase family pro 0.933 0.333 0.327 3e-88
170588121 1811 Pao retrotransposon peptidase family pro 0.933 0.323 0.305 4e-85
170586490 1836 Pao retrotransposon peptidase family pro 0.933 0.319 0.305 4e-85
170588613 1750 Pao retrotransposon peptidase family pro 0.933 0.334 0.305 4e-85
170589333 1566 Pao retrotransposon peptidase family pro 0.933 0.374 0.305 5e-85
237845597 1683 Pao retrotransposon peptidase domain-con 0.933 0.348 0.305 6e-85
170588831 1802 Pao retrotransposon peptidase family pro 0.941 0.327 0.318 2e-84
>gi|291231886|ref|XP_002735894.1| PREDICTED: Pao retrotransposon peptidase family protein-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
 Score =  355 bits (910), Expect = 6e-95,   Method: Compositional matrix adjust.
 Identities = 223/656 (33%), Positives = 334/656 (50%), Gaps = 49/656 (7%)

Query: 2   YRCALIGDIEKAFLNVGLNEGERDYTRILWVKDVAKPLDSDNVVVLRHTRLPFGVVSSPF 61
           +   L  DIEK FLNV L + ++++T+  W+KD + P     + + R   + FG  SSPF
Sbjct: 94  HNIGLSSDIEKTFLNVKLAKNDQEFTKFFWLKDPSDP--HGEMDIYRFKVVLFGSTSSPF 151

Query: 62  LLSCVIRTHLDKYSGDYIDQLKNNIYMDNILCGVNNEEEIENFVGTARKVFSDASLNLRE 121
           +L+ VI+THL+         LK+NIY+DN+L GV N  +   +   + ++  DA LNLR 
Sbjct: 152 MLNAVIKTHLESQECTISKDLKSNIYVDNVLTGVKNTVDATKYYERSTEMMRDAGLNLRS 211

Query: 122 WASNYPSVLIGTLSPELVNTSRVQNTLGMLWDTQEDTLSLKFHY-------EYKQGIICK 174
           WA+N P +   +   +   +    N LG+ W+T +DT+    HY            +  K
Sbjct: 212 WATNDPMLRNRSEIDKTAESKSNVNILGLRWNTHQDTI----HYPNTDIGQTNSDNLHTK 267

Query: 175 RLLLSVLASFFDILGLWTPIIMSLKLLVQSAWIQKKEWDDELDSKDKEKFLEIVDSMNFV 234
           R ++   +  FD LG   P+ +  K  +Q  W     WD  + +   E++  I  +++ V
Sbjct: 268 REIVRYTSRLFDPLGYLAPVHVKAKSFIQKLWKAGLFWDTPISADLTEEWGNIRQNLDSV 327

Query: 235 SNIPVARYFDVPNNHDDQSVRYELHAFSDAC-SYSYASVVYLRSVSHSGDIRTNIVFAKS 293
               V R F   +N   ++  YELH F+DA  + ++ +VVYL++ +H     T+IV AKS
Sbjct: 328 KGTTVNRIFFTDSN--TETDEYELHVFADASKTTAHGAVVYLKNGNH-----TSIVIAKS 380

Query: 294 RVAPTNKPTLPRLELLGALIAYRSLKFVKNSL-HINIDKCYLWIDNQCVIHWLTGNKVLP 352
           R+ P    TLP LEL+ A IA R   FV  +L ++ I+KC LW D+Q  IHW+  +K LP
Sbjct: 381 RLNPVRPMTLPHLELVAATIATRLADFVLKALTNVKINKCVLWSDSQITIHWIRSHKTLP 440

Query: 353 TFVNNRVKEIKASVFPIVYKYIPTDSNPADLACRGSSAVDLQGNKLWWEGPGFLALGTWP 412
            FV NRV+EI+A  F  + KY PT  NPA+L  RG +  DL  +KLWWEGP +L  G WP
Sbjct: 441 VFVENRVREIRAGPFDDI-KYCPTAENPANLLTRGITTNDLNRSKLWWEGPHWLKGGKWP 499

Query: 413 D---FPFQCKSICEEVTVDNGHDEVNLVSKCE-------EKLQPISPLN----------- 451
               F     ++ +    D      ++ + C        ++L+P   LN           
Sbjct: 500 KCDLFDASENAVLKLNITDEFEPVKDMNTNCHRDELENVDELKPCDKLNTEICVAKPCGI 559

Query: 452 ---IDEQRYSSFKKLVNVTCYVKKFI-NLCR-KRSEFKGPISLEEFSGSKTEWLKYAQEK 506
              ID  R+ S  KL+ VT  V +FI NL R K +   G I+ +E   ++T W+   Q +
Sbjct: 560 SKVIDIDRFQSLSKLLRVTTLVSRFISNLKRDKTTRDVGSITTQELCHAETMWIYSVQNQ 619

Query: 507 YFPSTVEKLKQGLSDPIATQLGLELNDEGLLICKGRFRELRYDGRKVFPILLPRRCHLTN 566
            + +    LK   + P+A Q+ L L+DE ++ C GR      D    FPILLP     + 
Sbjct: 620 RYCNEKSALKSQSNFPLARQIKLYLDDENIIRCGGRIHNAPVDYDAKFPILLPAHHKFSE 679

Query: 567 IIVTDVHRACFHNGASQTLATLRLDYWITQGRSAVKQILKSCVNCKRFRQGPYKQP 622
           + +T  H    H+G   T+  LR  YWI + RS VK +L  C+ CKR     Y+ P
Sbjct: 680 LSITQTHAQTLHSGVESTVTLLRQRYWIPKCRSTVKSVLYKCITCKRLGGKSYEVP 735

Source: Saccoglossus kowalevskii

Species: Saccoglossus kowalevskii

Genus: Saccoglossus

Family: Harrimaniidae

Order:

Class: Enteropneusta

Phylum: Hemichordata

Superkingdom: Eukaryota
>gi|291230224|ref|XP_002735068.1| PREDICTED: Pao retrotransposon peptidase family protein-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|291222018|ref|XP_002731015.1| PREDICTED: Pao retrotransposon peptidase family protein-like [Saccoglossus kowalevskii] Back     alignment and taxonomy information
>gi|170581346|ref|XP_001895645.1| Pao retrotransposon peptidase family protein [Brugia malayi] gi|158597341|gb|EDP35513.1| Pao retrotransposon peptidase family protein [Brugia malayi] Back     alignment and taxonomy information
>gi|170588121|ref|XP_001898822.1| Pao retrotransposon peptidase family protein [Brugia malayi] gi|158593035|gb|EDP31630.1| Pao retrotransposon peptidase family protein [Brugia malayi] Back     alignment and taxonomy information
>gi|170586490|ref|XP_001898012.1| Pao retrotransposon peptidase family protein [Brugia malayi] gi|158594407|gb|EDP32991.1| Pao retrotransposon peptidase family protein [Brugia malayi] Back     alignment and taxonomy information
>gi|170588613|ref|XP_001899068.1| Pao retrotransposon peptidase family protein [Brugia malayi] gi|158593281|gb|EDP31876.1| Pao retrotransposon peptidase family protein [Brugia malayi] Back     alignment and taxonomy information
>gi|170589333|ref|XP_001899428.1| Pao retrotransposon peptidase family protein [Brugia malayi] gi|158593641|gb|EDP32236.1| Pao retrotransposon peptidase family protein [Brugia malayi] Back     alignment and taxonomy information
>gi|237845597|ref|XP_002372096.1| Pao retrotransposon peptidase domain-containing protein [Toxoplasma gondii ME49] gi|211969760|gb|EEB04956.1| Pao retrotransposon peptidase domain-containing protein [Toxoplasma gondii ME49] Back     alignment and taxonomy information
>gi|170588831|ref|XP_001899177.1| Pao retrotransposon peptidase family protein [Brugia malayi] gi|158593390|gb|EDP31985.1| Pao retrotransposon peptidase family protein [Brugia malayi] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

No hits with e-value below 0.001 by BLAST

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query628
pfam05380159 pfam05380, Peptidase_A17, Pao retrotransposon pept 5e-33
cd01644213 cd01644, RT_pepA17, RT_pepA17: Reverse transcripta 9e-33
pfam00078194 pfam00078, RVT_1, Reverse transcriptase (RNA-depen 1e-04
>gnl|CDD|147520 pfam05380, Peptidase_A17, Pao retrotransposon peptidase Back     alignment and domain information 
 Score =  124 bits (312), Expect = 5e-33
 Identities = 56/162 (34%), Positives = 87/162 (53%), Gaps = 6/162 (3%)

Query: 174 KRLLLSVLASFFDILGLWTPIIMSLKLLVQSAWIQKKEWDDELDSKDKEKFLEIVDSMNF 233
           KR +LS +AS FD LGL  P+ +  K+ +Q  W QK  WD+E+  +  +++L     ++ 
Sbjct: 3   KREVLSQVASIFDPLGLLAPVTVRAKIFLQEIWRQKLGWDEEIPEELSQRWLAFRKQLST 62

Query: 234 VSNIPVARYFDVPNNHDDQSVRYELHAFSDACSYSYASVVYLRSVSHSGDIRTNIVFAKS 293
           +  I V RY         +++  +LH F DA   +YA+ VY R V    +I+ ++V AK+
Sbjct: 63  LQQIRVPRYV---PYSPARNI--QLHGFCDASEKAYAAAVYWR-VEEGEEIQVSLVAAKT 116

Query: 294 RVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINIDKCYLW 335
           RVAP    ++PRLEL  AL+  R  + VK    +     Y W
Sbjct: 117 RVAPLKTVSIPRLELCAALLLTRLARAVKPEHDVKPTDTYCW 158

Corresponds to Merops family A17. These proteins are homologous to aspartic proteinases encoded by retroposons and retroviruses. Length = 159
>gnl|CDD|238822 cd01644, RT_pepA17, RT_pepA17: Reverse transcriptase (RTs) in retrotransposons Back     alignment and domain information
>gnl|CDD|215698 pfam00078, RVT_1, Reverse transcriptase (RNA-dependent DNA polymerase) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 628
PF05380159 Peptidase_A17: Pao retrotransposon peptidase ; Int 99.98
cd01644213 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) i 99.97
cd03714119 RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) oc 99.84
cd03715210 RT_ZFREV_like RT_ZFREV_like: A subfamily of revers 99.84
cd01645213 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from r 99.82
cd01647177 RT_LTR RT_LTR: Reverse transcriptases (RTs) from r 99.68
PF0933739 zf-H2C2: His(2)-Cys(2) zinc finger; InterPro: IPR0 99.38
PF00078214 RVT_1: Reverse transcriptase (RNA-dependent DNA po 99.02
cd0030498 RT_like RT_like: Reverse transcriptase (RT, RNA-de 98.93
.; GO: 0004523 ribonuclease H activity" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF00336">PF00336245 DNA_pol_viral_C: DNA polymerase (viral) C-terminal 98.69
cd06222130 RnaseH RNase H (RNase HI) is an endonuclease that 98.56
PF00075132 RNase_H: RNase H; InterPro: IPR002156 The RNase H 98.22
PRK13907128 rnhA ribonuclease H; Provisional 98.11
PRK07708219 hypothetical protein; Validated 98.1
cd01648119 TERT TERT: Telomerase reverse transcriptase (TERT) 98.04
COG0328154 RnhA Ribonuclease HI [DNA replication, recombinati 97.78
PRK00203150 rnhA ribonuclease H; Reviewed 97.68
cd01650220 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repea 97.65
PRK07238372 bifunctional RNase H/acid phosphatase; Provisional 97.63
PRK08719147 ribonuclease H; Reviewed 97.54
PF1345687 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EH 97.53
PRK06548161 ribonuclease H; Provisional 97.5
cd01651226 RT_G2_intron RT_G2_intron: Reverse transcriptases 97.35
PF07727246 RVT_2: Reverse transcriptase (RNA-dependent DNA po 97.21
cd03487214 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcr 96.97
cd01646158 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcrip 96.83
KOG3752|consensus371 95.28
cd01709346 RT_like_1 RT_like_1: A subfamily of reverse transc 86.09
>PF05380 Peptidase_A17: Pao retrotransposon peptidase ; InterPro: IPR008042 This signature identifies members of the Pao retrotransposon family Back     alignment and domain information 
Probab=99.98  E-value=2e-32  Score=254.10  Aligned_cols=159  Identities=40%  Similarity=0.681  Sum_probs=149.0

Q ss_pred             hhHHHHHHhHhhhcccCCCchhHHHHHHHHHHHHHhcCCCCCccCChhhHHHHHHHHHhccccCccccceeecCCCCCCC
Q psy13892        172 ICKRLLLSVLASFFDILGLWTPIIMSLKLLVQSAWIQKKEWDDELDSKDKEKFLEIVDSMNFVSNIPVARYFDVPNNHDD  251 (628)
Q Consensus       172 ~tkR~~~s~~~~~~dplG~~~p~~~~~k~ll~~l~~~~~~Wd~~i~~e~~~~~~~~~~~l~~~~~~~~pr~~~~~~~~~~  251 (628)
                      +|||+++|.++++|||+|+++|+++++|.++|.+|+.+.+||++++++....|..|.+.+.....+.+||++..     .
T Consensus         1 pTKR~ils~ia~~yDPlGl~~p~~i~~K~llq~lw~~~l~WD~~lp~el~~~w~~~~~~l~~~~~i~iPR~i~~-----~   75 (159)
T PF05380_consen    1 PTKRQILSFIASIYDPLGLLAPIIIRAKLLLQKLWQSKLDWDDPLPDELRKEWKKWLKELESLSPIRIPRCIPI-----S   75 (159)
T ss_pred             CChHHHHHHHHHHcCcchhhHHHHHHHHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHhhcccccCCccccc-----c
Confidence            48999999999999999999999999999999999999999999999999999999999998778899997653     2


Q ss_pred             CCcceeEEEeeccccccceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHHHHHHHHHHHHHHHhhcccccee
Q psy13892        252 QSVRYELHAFSDACSYSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYRSLKFVKNSLHINIDK  331 (628)
Q Consensus       252 ~~~~~~l~vftDAS~~g~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELlAi~~a~~~~~~~~~~~~~~~~~  331 (628)
                      .....++++|||||..|||||+|.+. ..||...+.+++||+|++|.+..||||+||+|+++|++++..+..++++.+.+
T Consensus        76 ~~~~~~L~~F~DAS~~aygavvYlr~-~~~~~~~~~ll~aKsrv~P~k~~tIPRlEL~a~~l~~~l~~~~~~~l~~~~~~  154 (159)
T PF05380_consen   76 DYRSVELHVFCDASESAYGAVVYLRS-YSDGSVQVRLLFAKSRVAPLKTVTIPRLELLAALLGVRLANTVKKELDIEISQ  154 (159)
T ss_pred             cccceeeeEeecccccceeeEeEeee-ccCCceeeeeeeecccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHcCCCcce
Confidence            34567999999999999999999998 67888889999999999999988999999999999999999999999999999


Q ss_pred             EEEEe
Q psy13892        332 CYLWI  336 (628)
Q Consensus       332 ~~i~t  336 (628)
                      +++||
T Consensus       155 ~~~wt  159 (159)
T PF05380_consen  155 VVFWT  159 (159)
T ss_pred             eEEeC
Confidence            99986

>cd01644 RT_pepA17 RT_pepA17: Reverse transcriptase (RTs) in retrotransposons Back     alignment and domain information
>cd03714 RT_DIRS1 RT_DIRS1: Reverse transcriptases (RTs) occurring in the DIRS1 group of retransposons Back     alignment and domain information
>cd03715 RT_ZFREV_like RT_ZFREV_like: A subfamily of reverse transcriptases (RTs) found in sequences similar to the intact endogenous retrovirus ZFERV from zebrafish and to Moloney murine leukemia virus RT Back     alignment and domain information
>cd01645 RT_Rtv RT_Rtv: Reverse transcriptases (RTs) from retroviruses (Rtvs) Back     alignment and domain information
>cd01647 RT_LTR RT_LTR: Reverse transcriptases (RTs) from retrotransposons and retroviruses which have long terminal repeats (LTRs) in their DNA copies but not in their RNA template Back     alignment and domain information
>PF09337 zf-H2C2: His(2)-Cys(2) zinc finger; InterPro: IPR015416 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>PF00078 RVT_1: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR000477 The use of an RNA template to produce DNA, for integration into the host genome and exploitation of a host cell, is a strategy employed in the replication of retroid elements, such as the retroviruses and bacterial retrons Back     alignment and domain information
>cd00304 RT_like RT_like: Reverse transcriptase (RT, RNA-dependent DNA polymerase)_like family Back     alignment and domain information
>PF00336 DNA_pol_viral_C: DNA polymerase (viral) C-terminal domain; InterPro: IPR001462 This domain is at the C terminus of hepatitis B-type viruses P proteins and represents a functional domain that controls the RNase H activities of the protein Back     alignment and domain information
>cd06222 RnaseH RNase H (RNase HI) is an endonuclease that cleaves the RNA strand of an RNA/DNA hybrid in a not sequence-specific manner Back     alignment and domain information
>PF00075 RNase_H: RNase H; InterPro: IPR002156 The RNase H domain is responsible for hydrolysis of the RNA portion of RNA x DNA hybrids, and this activity requires the presence of divalent cations (Mg2+ or Mn2+) that bind its active site Back     alignment and domain information
>PRK13907 rnhA ribonuclease H; Provisional Back     alignment and domain information
>PRK07708 hypothetical protein; Validated Back     alignment and domain information
>cd01648 TERT TERT: Telomerase reverse transcriptase (TERT) Back     alignment and domain information
>COG0328 RnhA Ribonuclease HI [DNA replication, recombination, and repair] Back     alignment and domain information
>PRK00203 rnhA ribonuclease H; Reviewed Back     alignment and domain information
>cd01650 RT_nLTR_like RT_nLTR: Non-LTR (long terminal repeat) retrotransposon and non-LTR retrovirus reverse transcriptase (RT) Back     alignment and domain information
>PRK07238 bifunctional RNase H/acid phosphatase; Provisional Back     alignment and domain information
>PRK08719 ribonuclease H; Reviewed Back     alignment and domain information
>PF13456 RVT_3: Reverse transcriptase-like; PDB: 3ALY_A 2EHG_A 3HST_B Back     alignment and domain information
>PRK06548 ribonuclease H; Provisional Back     alignment and domain information
>cd01651 RT_G2_intron RT_G2_intron: Reverse transcriptases (RTs) with group II intron origin Back     alignment and domain information
>PF07727 RVT_2: Reverse transcriptase (RNA-dependent DNA polymerase); InterPro: IPR013103 A reverse transcriptase gene is usually indicative of a mobile element such as a retrotransposon or retrovirus Back     alignment and domain information
>cd03487 RT_Bac_retron_II RT_Bac_retron_II: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons Back     alignment and domain information
>cd01646 RT_Bac_retron_I RT_Bac_retron_I: Reverse transcriptases (RTs) in bacterial retrotransposons or retrons Back     alignment and domain information
>KOG3752|consensus Back     alignment and domain information
>cd01709 RT_like_1 RT_like_1: A subfamily of reverse transcriptases (RTs) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query628
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-06
1qzv_F154 Plant photosystem I: subunit PSAF; photosynthesis, 6e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 53.3 bits (127), Expect = 2e-07
 Identities = 80/498 (16%), Positives = 145/498 (29%), Gaps = 136/498 (27%)

Query: 157 DTLSLKFHYEYKQGIICKRLLLSVLASFF-------DILGLWTPIIMSLKLLVQSAWIQK 209
           D  + +  Y+YK        +LSV    F       D+  +   I+             K
Sbjct: 8   DFETGEHQYQYKD-------ILSVFEDAFVDNFDCKDVQDMPKSIL------------SK 48

Query: 210 KEWDDELDSKD-KEKFLEIVDSMNFVSNIPVARYFDVPNNHDDQSVRYELHAFSDACSYS 268
           +E D  + SKD     L +  ++       V ++ +     + + +   +       S  
Sbjct: 49  EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMM 108

Query: 269 YASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELL----GALIAYRSLKFV--- 321
               +  R   +      N VFAK  V         RL+       AL+  R  K V   
Sbjct: 109 TRMYIEQRDRLY----NDNQVFAKYNV--------SRLQPYLKLRQALLELRPAKNVLID 156

Query: 322 ------KNSLHINI---DKCYLWIDNQCVIHWLT-GNKVLPTFVNNRVKEIKASVFPIVY 371
                 K  + +++    K    +D +  I WL   N        N  + +   +  ++Y
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFK--IFWLNLKNC-------NSPETVLEMLQKLLY 207

Query: 372 KYIPTDSNPADLACRGSSAVDLQGNKL-----WWEGP-GFLAL------GTWPDFPFQCK 419
           +  P  ++ +D +      +     +L             L L        W  F   CK
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCK 267

Query: 420 SICEEVTVDNGH--DEVNLVSKCEEKLQPIS-PLNIDEQRYSSFKKLVNVTCYVKKFINL 476
            +   +T       D ++  +     L   S  L  DE + S   K ++      +  +L
Sbjct: 268 IL---LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-SLLLKYLDC-----RPQDL 318

Query: 477 CRKRSEFKG--PISLEEFSGSKTEWLKYAQEKYFPSTVEKLKQGLSDPIATQLGLELNDE 534
                E     P  L   +            +   +T +  K    D + T +   LN  
Sbjct: 319 ---PREVLTTNPRRLSIIA---------ESIRDGLATWDNWKHVNCDKLTTIIESSLNVL 366

Query: 535 GLLICKGRFRELRYDGRKVFP--ILLPRRCHLTNIIVTDVHRACFHNGASQTLATLRLDY 592
                +  F  L      VFP    +P                      +  L+ +    
Sbjct: 367 EPAEYRKMFDRL-----SVFPPSAHIP----------------------TILLSLI---- 395

Query: 593 WITQGRSAVKQILKSCVN 610
           W    +S V  ++     
Sbjct: 396 WFDVIKSDVMVVVNKLHK 413
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query628
1rw3_A455 POL polyprotein; RNA and DNA dependent DNA polymer 100.0
2zd1_B428 P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleosid 100.0
2zd1_A557 Reverse transcriptase/ribonuclease H; P51/P66, het 100.0
1mu2_A555 HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym 99.97
3fsi_A255 RT, reverse transcriptase domain; transferase/DNA 99.9
3oym_A 395 PFV integrase, P42IN; protein-DNA complex; HET: DN 98.65
3hst_B141 Protein RV2228C/MT2287; ribonuclease H1, RV2228C N 98.63
2ehg_A149 Ribonuclease HI; RNAse HI, hyperthermophilic archa 98.56
3u3g_D140 Ribonuclease H, RNAse H1; hydrolase, cleave the RN 98.47
3nnq_A114 Integrase P46, N-terminal domain of moloney murine 98.31
2kq2_A147 Ribonuclease H-related protein; PSI, NESG, protein 98.25
2qkb_A154 Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hy 98.0
3p1g_A165 Xenotropic murine leukemia virus-related virus (X 97.89
2e4l_A158 Ribonuclease HI, RNAse HI; hydrolase, endoribonucl 97.73
3f9k_A 210 Integrase; protein-protein complex, AIDS, DNA inte 97.73
3h08_A146 RNH (ribonuclease H); RNAse H, 3D-structure, endon 97.71
3qio_A150 GAG-POL polyprotein; RNAse H, inhibitor, nuclease, 97.7
1jl1_A155 Ribonuclease HI; RNAse HI, protein stability, ther 97.69
2lsn_A165 Reverse transcriptase; RNAse H, viral protein; NMR 97.6
1ril_A166 Ribonuclease H; hydrolase(endoribonuclease); 2.80A 97.42
3hph_A 219 Integrase, IN; protein-protein complex, tetramer, 97.38
1mu2_A555 HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polym 96.67
4htu_A134 Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, 96.63
1k6y_A 212 Integrase; HIV-1, domain organization, transferase 96.51
1zbf_A142 Ribonuclease H-related protein; RNAse H, RNA/DNA h 96.46
3kyl_A596 Telomerase reverse transcriptase; reverse transcri 83.61
>1rw3_A POL polyprotein; RNA and DNA dependent DNA polymerase, reverse transcriptase, transferase, replication; 3.00A {Moloney murine leukemia virus} SCOP: e.8.1.2 Back     alignment and structure
Probab=100.00  E-value=1.8e-43  Score=384.48  Aligned_cols=315  Identities=11%  Similarity=0.015  Sum_probs=235.5

Q ss_pred             cceEeehhHHhhccccccCcCCcCeEEEEEecCCCCCCCCCCceEEEEeeccccCcCchHHHHHHHHHHHhhhcchhhhh
Q psy13892          2 YRCALIGDIEKAFLNVGLNEGERDYTRILWVKDVAKPLDSDNVVVLRHTRLPFGVVSSPFLLSCVIRTHLDKYSGDYIDQ   81 (628)
Q Consensus         2 ~~~~~~~Dl~~af~qi~l~~~d~~~~~F~~~~~~~~~~~~~~~~~y~~~rmpFGl~~aP~~~~~~i~~~l~~~~~~~~~~   81 (628)
                      .++++++|+++|||||+|+|+|+++|+|.|+..     ..++.|+|+|+|||||+++||++||++|+.++.++...+. .
T Consensus       124 ~~~~s~lDl~~~y~qi~l~~~d~~~taF~~~~p-----~~~~~g~y~~~~mpfGl~naP~~fq~~m~~~l~~~~~~~~-~  197 (455)
T 1rw3_A          124 HQWYTVLDLKDAFFCLRLHPTSQPLFAFEWRDP-----EMGISGQLTWTRLPQGFKNSPTLFDEALHRDLADFRIQHP-D  197 (455)
T ss_dssp             CCEEEEEEBTTGGGGSBBCSTTSGGGCEEECTT-----SSSCCEEEEESBCCSSCTTHHHHHHHHHHHHHHHHHHTCT-T
T ss_pred             CceEEecchhhhheeEeccccccceeEEeecCC-----CCCCCceEEEEecCCCCCCcHHHHHHHHHHHHHHhhhhCC-C
Confidence            579999999999999999999999999999743     3567889999999999999999999999999988742210 1


Q ss_pred             hhhceeecccccccCChHHHHHHHHhHHHHHhhhcccc----ccccccCccccccCCCccccccccccceeeeeeccCCC
Q psy13892         82 LKNNIYMDNILCGVNNEEEIENFVGTARKVFSDASLNL----REWASNYPSVLIGTLSPELVNTSRVQNTLGMLWDTQED  157 (628)
Q Consensus        82 i~~~~YvDDili~s~t~ee~~~~~~~v~~~l~~~g~~l----~~~~~~~~~~lg~~i~~~~~~~~~~~k~LG~~w~~~~d  157 (628)
                      ....+|||||+|+++|.+||.+++++|+++|+++||.+    |+|...+.+|||+.|..++.           ..++...
T Consensus       198 ~~v~~YvDDili~s~~~~e~~~~l~~v~~~l~~~gl~l~~~K~~f~~~~~~fLG~~i~~~gi-----------~~~~~kv  266 (455)
T 1rw3_A          198 LILLQYVDDLLLAATSELDCQQGTRALLQTLGNLGYRASAKKAQICQKQVKYLGYLLKEGQR-----------WLTEARK  266 (455)
T ss_dssp             CEEEEETTEEEEEESSHHHHHHHHHHHHHHHHHHTCCBCGGGCCCSBSSCEETTEEESSSEE-----------CCCTTCC
T ss_pred             ceEEEEcCCEEEecCCHHHHHHHHHHHHHHHHHcCCccCccchhhhccceeEeeeeccCCee-----------EEChhHh
Confidence            22368999999999999999999999999999999998    56766777777655554432           2222111


Q ss_pred             eEEEeecccccccchhHHHHHHhHhhhcccCCCchhHHHHHHHHHHHHHh-cCCCCCccCChhhHHHHHHHHHhccccCc
Q psy13892        158 TLSLKFHYEYKQGIICKRLLLSVLASFFDILGLWTPIIMSLKLLVQSAWI-QKKEWDDELDSKDKEKFLEIVDSMNFVSN  236 (628)
Q Consensus       158 ~~~~~~~~~~~~~~~tkR~~~s~~~~~~dplG~~~p~~~~~k~ll~~l~~-~~~~Wd~~i~~e~~~~~~~~~~~l~~~~~  236 (628)
                      ....     ..+.+.|++++.+++|.+-....++..+...++.+.+.+.+ ..+.|++    +++++|+++++.+.+.+.
T Consensus       267 ~~i~-----~~~~p~t~k~l~~flG~~~y~r~fi~~~~~~~~pL~~llkk~~~~~W~~----~~~~af~~lK~~l~~~pv  337 (455)
T 1rw3_A          267 ETVM-----GQPTPKTPRQLREFLGTAGFCRLWIPGFAEMAAPLYPLTKTGTLFNWGP----DQQKAYQEIKQALLTAPA  337 (455)
T ss_dssp             CCCC-----CCCTTTHHHHHHHTTTTTCCCSSCCCCCGGGCCTTCC--------CCCC----CCSSSCCHHHHHTCSSCC
T ss_pred             hhhc-----cCCCCCCHHHhhhhcccchHHHHHHhhhhhhcccHHHHhcCCCCcCchH----HHHHHHHHHHHHhhcCcc
Confidence            1111     22346789999999876433333333333222222222211 2577764    577889999999999877


Q ss_pred             cccceeecCCCCCCCCCcceeEEEeeccccccceeeEEEEEeecCCCeeeeEeecccccCCCCCCccchhhHHHHHHHHH
Q psy13892        237 IPVARYFDVPNNHDDQSVRYELHAFSDACSYSYASVVYLRSVSHSGDIRTNIVFAKSRVAPTNKPTLPRLELLGALIAYR  316 (628)
Q Consensus       237 ~~~pr~~~~~~~~~~~~~~~~l~vftDAS~~g~Gavl~~~~~~~~g~~~~~~~~sks~~~~~~~~si~~~ELlAi~~a~~  316 (628)
                      +..|+.            ..+++++||||+.|+|||++|.   .+|..++++++||+...++++|+++++||+|+++|++
T Consensus       338 L~~p~~------------~~~~~l~~DAS~~~~gavL~q~---~~~~~~~i~y~Sk~l~~~e~~ys~~ekEllAi~~a~~  402 (455)
T 1rw3_A          338 LGLPDL------------TKPFELFVDEKQGYAKGVLTQK---LGPWRRPVAYLSKKLDPVAAGWPPCLRMVAAIAVLTK  402 (455)
T ss_dssp             SCCSSS------------CCTTSCEEEEEECSSSBEECCB---CTTTTCCCCCCCBCSCSSCSSSCCSSHHHHHHHHHHH
T ss_pred             cccCCC------------CCcEEEEEeccCCcceeEEEEe---cCCcEEEEEEEcccCCccccccchHHHHHHHHHHHHH
Confidence            776654            3458999999999999999864   4677889999999999999999999999999999999


Q ss_pred             HHHHHHhhccccceeEEEEecchhhhHhhhcCC-c--cChhHHhHHHHHH
Q psy13892        317 SLKFVKNSLHINIDKCYLWIDNQCVIHWLTGNK-V--LPTFVNNRVKEIK  363 (628)
Q Consensus       317 ~~~~~~~~~~~~~~~~~i~tDs~~~l~~l~~~~-~--~~~~~~~r~~~i~  363 (628)
                      .+++++     .+.+++|+|||. +++|++++. +  ....+.+|...++
T Consensus       403 ~~~~yl-----~g~~~~v~tDh~-~~~~l~~~~~~~~~~~Rl~rW~~~L~  446 (455)
T 1rw3_A          403 DAGKLT-----MGQPLVIKAPHA-VEALVKQPPDRWLSNARMTHYQALLL  446 (455)
T ss_dssp             HHHGGG-----CSSCEEEECSSC-TTTTSSSTTTTTCCCCCCSCCCCCCC
T ss_pred             HHHHHc-----CCCcEEEEecCh-HHHHhCCCccccccchHHHHHHHHhC
Confidence            888876     457899999998 999998773 2  3444555544443
>2zd1_B P51 RT; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} SCOP: e.8.1.2 PDB: 2ykm_B* 2ykn_B* 2ze2_B* 3bgr_B* 3ig1_B* 3irx_B* 3is9_B* 3qo9_B* 3v4i_B* 3v6d_B* 3v81_B* 3klf_B* 3kk1_B* 3kjv_B* 3kk2_B* 3kk3_B* 2be2_B* 1n5y_B* 1bqm_B* 1n6q_B* ... Back     alignment and structure
>2zd1_A Reverse transcriptase/ribonuclease H; P51/P66, hetero dimer, NNRTI, nonnucleoside inhibitor, AIDS, HIV, rilpivirine, diarylpyrimidine, DAPY, DNA recombination; HET: T27; 1.80A {Human immunodeficiency virus 1} PDB: 3is9_A* 3irx_A* 2ze2_A* 3bgr_A* 3qlh_A* 3klf_A* 3qo9_A* 1dlo_A 1bqm_A 2be2_A* 1s6q_A* 1s6p_A* 1s9g_A* 1suq_A* 2b5j_A* 2b6a_A* 2ban_A* 1s9e_A* 1hni_A* 1hnv_A* ... Back     alignment and structure
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B Back     alignment and structure
>3fsi_A RT, reverse transcriptase domain; transferase/DNA MMLV RT, protein-DNA complex, drug-DNA complex; HET: OWL; 1.75A {Moloney murine leukemia virus} SCOP: e.8.1.2 PDB: 1d1u_A 1n4l_A* 1ztt_A 2fjv_A* 2fjw_A 2fjx_A* 2fvp_A 2fvq_A 2fvr_A 2fvs_A 2r2r_A* 2r2s_A* 2r2t_A* 2r2u_A* 1ztw_A* 1i6j_A 1qaj_A* 1d0e_A* 1nnd_A 1mml_A ... Back     alignment and structure
>3oym_A PFV integrase, P42IN; protein-DNA complex; HET: DNA; 2.02A {Human spumaretrovirus} PDB: 3oyn_A* 3s3o_A* 4be2_A* 3l2q_A 3l2s_A 3l2r_A* 3l2u_A* 3l2v_A* 3l2w_A* 3l2t_A* 3os1_A* 3os2_A* 3os0_A* 3oya_A* 3oy9_A* 3oyc_A* 3oyd_A* 3oye_A* 3oyb_A* 3oyg_A* ... Back     alignment and structure
>3hst_B Protein RV2228C/MT2287; ribonuclease H1, RV2228C N-terminal domain, fusion protein, maltose binding protein, HYDR; HET: MLR TAR; 2.25A {Mycobacterium tuberculosis} Back     alignment and structure
>2ehg_A Ribonuclease HI; RNAse HI, hyperthermophilic archaeon, D stranded RNA-dependent RNAse, hydrolase; 1.60A {Sulfolobus tokodaii} PDB: 3aly_A Back     alignment and structure
>3u3g_D Ribonuclease H, RNAse H1; hydrolase, cleave the RNA strand of RNA/DNA hybrid; 1.40A {Uncultured organism} Back     alignment and structure
>3nnq_A Integrase P46, N-terminal domain of moloney murine leukemia VIRU integrase; retroviral integrase, Zn finger; 2.69A {Moloney murine leukemia virus} Back     alignment and structure
>2kq2_A Ribonuclease H-related protein; PSI, NESG, protein structure, APO enzyme, structural genomics, protein structure initiative; NMR {Desulfitobacterium hafniense dcb-2} PDB: 2kw4_A Back     alignment and structure
>2qkb_A Ribonuclease H1, HS-RNAse HC, RNAse H1; RNA/DNA hybrid; 2.40A {Homo sapiens} PDB: 2qk9_A 2qkk_A* Back     alignment and structure
>3p1g_A Xenotropic murine leukemia virus-related virus (X H domain; XMRV, RNAse H, reverse transcriptase, transcription; 1.50A {Xenotropic mulv-related virus} PDB: 3v1q_A 3v1o_A 3v1r_A* 2hb5_A 4e89_A Back     alignment and structure
>2e4l_A Ribonuclease HI, RNAse HI; hydrolase, endoribonuclease; 2.00A {Shewanella oneidensis} PDB: 2zqb_A Back     alignment and structure
>3f9k_A Integrase; protein-protein complex, AIDS, DNA integration, endonuclease magnesium, metal-binding, multifunctional enzyme; 3.20A {Human immunodeficiency virus type 2} PDB: 1e0e_A Back     alignment and structure
>3h08_A RNH (ribonuclease H); RNAse H, 3D-structure, endonuclease, hydrolase, magnesium, metal-binding; 1.60A {Chlorobaculum tepidum} Back     alignment and structure
>3qio_A GAG-POL polyprotein; RNAse H, inhibitor, nuclease, transferase, hydrolase- complex; HET: QID; 1.40A {Hiv-1 M} SCOP: c.55.3.1 PDB: 3qin_A* 3hyf_A* 1o1w_A 3lp3_A* 1hrh_A 3k2p_A* 1rdh_A Back     alignment and structure
>1jl1_A Ribonuclease HI; RNAse HI, protein stability, thermostability, hydrogen exchange, cooperativity, hydrolase; 1.30A {Escherichia coli} SCOP: c.55.3.1 PDB: 1f21_A 1jxb_A 1g15_A 1rch_A 1rdd_A 1rnh_A* 2rn2_A 1rda_A 1law_A 1rdb_A 1lav_A 3aa4_A 1rbu_A 1gob_A 1rdc_A 1kvc_A 3aa3_A 3aa2_A 3aa5_X 1rbv_A ... Back     alignment and structure
>2lsn_A Reverse transcriptase; RNAse H, viral protein; NMR {Simian foamy virus} Back     alignment and structure
>1ril_A Ribonuclease H; hydrolase(endoribonuclease); 2.80A {Thermus thermophilus} SCOP: c.55.3.1 PDB: 2rpi_A Back     alignment and structure
>3hph_A Integrase, IN; protein-protein complex, tetramer, DNA integration, endonucl magnesium, metal-binding, multifunctional enzyme; 2.64A {Maedi visna virus} PDB: 3hpg_A Back     alignment and structure
>1mu2_A HIV-2 RT; HIV-2 reverse transcriptase, AIDS, polymerase, drug design, transferase; 2.35A {Human immunodeficiency virus 2} SCOP: c.55.3.1 e.8.1.2 PDB: 1mu2_B Back     alignment and structure
>4htu_A Ribonuclease H, RNAse H; 5-chloro-2'-deoxyuridine, W-C base PAIR, wobble base PAIR, D helix; HET: DNA UCL; 1.49A {Bacillus halodurans} PDB: 3d0p_A* 4hue_A* 4huf_A* 4hug_A* 1zbf_A 1zbi_A 2g8u_A 3uld_A* 3ey1_A* 3twh_A* 2g8f_A 2g8v_A 2g8w_A 2g8i_A 2g8h_A 2g8k_A 3i8d_A* 2r7y_A* 1zbl_A Back     alignment and structure
>1k6y_A Integrase; HIV-1, domain organization, transferase; 2.40A {Human immunodeficiency virus 1} SCOP: a.4.10.1 c.55.3.2 PDB: 1wjb_A 1wjd_A 1wjf_A 1wja_A 1wjc_A 1wje_A Back     alignment and structure
>1zbf_A Ribonuclease H-related protein; RNAse H, RNA/DNA hybrid, DDE motif, hydrolase; 1.50A {Bacillus halodurans} SCOP: c.55.3.1 PDB: 1zbi_A 2g8u_A 2g8i_A 2g8h_A 2g8k_A 2g8f_A 2g8v_A 2g8w_A 3ey1_A* 1zbl_A 3d0p_A* 3i8d_A* 2r7y_A* Back     alignment and structure
>3kyl_A Telomerase reverse transcriptase; reverse transcriptase; 2.70A {Tribolium castaneum} PDB: 3du5_A 3du6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query628
d2zd1b1424 HIV-1 reverse transcriptase {Human immunodeficienc 99.97
d1mu2a2427 HIV-1 reverse transcriptase {Human immunodeficienc 99.95
d1hara_216 HIV-1 reverse transcriptase {Human immunodeficienc 99.89
d1ztwa1255 MMLV reverse transcriptase {Moloney murine leukemi 99.89
d1s1ta1110 HIV RNase H (Domain of reverse transcriptase) {Hum 97.95
d1mu2a1126 HIV RNase H (Domain of reverse transcriptase) {Hum 97.83
d1jl1a_152 RNase H (RNase HI) {Escherichia coli [TaxId: 562]} 97.04
d1zbfa1132 BH0863-like Ribonuclease H {Bacillus halodurans [T 96.92
d1rila_147 RNase H (RNase HI) {Thermus thermophilus [TaxId: 2 96.88
d1k6ya146 N-terminal Zn binding domain of HIV integrase {Hum 81.3
>d2zd1b1 e.8.1.2 (B:5-428) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: Reverse transcriptase
domain: HIV-1 reverse transcriptase
species: Human immunodeficiency virus type 1 [TaxId: 11676]

Probab=99.97  E-value=1.3e-31  Score=280.00  Aligned_cols=249  Identities=12%  Similarity=0.067  Sum_probs=166.3

Q ss_pred             cceEeehhHHhhccccccCcCCcCeEEEEEecCCCCCCCCCCceEEEEeeccccCcCchHHHHHHHHHHHhhhcchhhhh
Q psy13892          2 YRCALIGDIEKAFLNVGLNEGERDYTRILWVKDVAKPLDSDNVVVLRHTRLPFGVVSSPFLLSCVIRTHLDKYSGDYIDQ   81 (628)
Q Consensus         2 ~~~~~~~Dl~~af~qi~l~~~d~~~~~F~~~~~~~~~~~~~~~~~y~~~rmpFGl~~aP~~~~~~i~~~l~~~~~~~~~~   81 (628)
                      .+|++++||++|||||+|+|+|+++|||.+....    -.++.+.|+|+|||||+++||++||++|+.+|.++..... .
T Consensus        99 ~~~ft~lDl~~ay~qIpl~e~~r~~tAF~~p~~~----f~T~~g~y~~~vlPfGl~nsPa~Fqr~m~~il~~~~~~~~-~  173 (424)
T d2zd1b1          99 KKSVTVLDVGDAYFSVPLDEDFRKYTAFTIPSIN----NETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFKKQNP-D  173 (424)
T ss_dssp             SSEEEEEECGGGGGGSBCCTTTGGGGCEEECCGG----GCSCCEEEEESBCCTTCTHHHHHHHHHHHHHHHHHHHHCT-T
T ss_pred             CceEeeccccccccccCCChhhccceeccccCcc----cccCCceEEEEecCCcccCcHHHHHHHHHHHcccccccCc-c
Confidence            4799999999999999999999999999987542    2578899999999999999999999999999988765321 1


Q ss_pred             hhhceeecccccccCC-hHHHHHHHHhHHHHHhhhcccc---ccccccCccccccCCCccccccccccceeeeeeccCCC
Q psy13892         82 LKNNIYMDNILCGVNN-EEEIENFVGTARKVFSDASLNL---REWASNYPSVLIGTLSPELVNTSRVQNTLGMLWDTQED  157 (628)
Q Consensus        82 i~~~~YvDDili~s~t-~ee~~~~~~~v~~~l~~~g~~l---~~~~~~~~~~lg~~i~~~~~~~~~~~k~LG~~w~~~~d  157 (628)
                      +.+..|||||+|+|++ .++|.+++++|+++|.++||.+   |.|...++++||+.|.+++...+...            
T Consensus       174 ~~i~~Y~DDIlI~S~~~~eeH~~~l~~vl~~L~~~gl~l~~Kk~f~~~~v~~LG~~is~~gi~~~~~k------------  241 (424)
T d2zd1b1         174 IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGLTTPDKKHQKEPPFLWMGYELHPDKWTVQPIV------------  241 (424)
T ss_dssp             CEEEEETTEEEEEECSCHHHHHHHHHHHHHHHHHHHC------------CTTCCEEECGGGCCCCCCC------------
T ss_pred             eeEEeccceEEEecCchhHHHHHHHHHHHHHHHHhCCccchhhhhhhcccccceeeecCCcEeCCHHH------------
Confidence            2236899999999985 8999999999999999999987   44556666666555555443221110            


Q ss_pred             eEEEeecccccccchhHHHHHHhHhhhcccCCCchhHHHHHHHHHHHHHhcCCCCCc--cCChhhHHHHHHHHHhccccC
Q psy13892        158 TLSLKFHYEYKQGIICKRLLLSVLASFFDILGLWTPIIMSLKLLVQSAWIQKKEWDD--ELDSKDKEKFLEIVDSMNFVS  235 (628)
Q Consensus       158 ~~~~~~~~~~~~~~~tkR~~~s~~~~~~dplG~~~p~~~~~k~ll~~l~~~~~~Wd~--~i~~e~~~~~~~~~~~l~~~~  235 (628)
                           +   ....+.|.+++.+++|.+--.--++..+.  .+. +..+.+....++.  .++++++.+|+++++.+.+.+
T Consensus       242 -----l---~~~~p~t~kelq~fLG~~n~~r~fIp~~s--~~~-L~~ll~~~~~~~~~~~Wt~e~~~af~~lK~~l~~~p  310 (424)
T d2zd1b1         242 -----L---PEKDSWTVNDIQKLVGKLNWASQIYPGIK--VRQ-LSKLLRGTKALTEVIPLTEEAELELAENREILKEPV  310 (424)
T ss_dssp             -----C---CCCSSEEHHHHHHHHHHHHHHTTTCTTCC--CHH-HHHTTCSCCCTTCEECCCHHHHHHHHHHHHHTTSCC
T ss_pred             -----h---ccccCCCHHHHHHHHHHHHHHHHhcccch--HHH-HHHHhhhhccCCCCccCCHHHHHHHHHHHHHhcccc
Confidence                 1   22345566666666654311111222111  111 1222222222221  236899999999999999986


Q ss_pred             ccccceeecCCCCCCCCCcceeEEEeeccccccceeeEEEEEeecCCCeeeeEeeccc
Q psy13892        236 NIPVARYFDVPNNHDDQSVRYELHAFSDACSYSYASVVYLRSVSHSGDIRTNIVFAKS  293 (628)
Q Consensus       236 ~~~~pr~~~~~~~~~~~~~~~~l~vftDAS~~g~Gavl~~~~~~~~g~~~~~~~~sks  293 (628)
                      .+..|+.            +.+|++.+|||  |.|+++++..+ +++....+.++++.
T Consensus       311 ~L~~~Dp------------~kp~~~~~das--~~g~~~~~~~q-~~~~~~~~~~~~~~  353 (424)
T d2zd1b1         311 HGVYYDP------------SKDLIAEIQKQ--GQGQWTYQIYQ-EPFKNLKTGKYARM  353 (424)
T ss_dssp             TTCCCCT------------TSCCEEEEEEE--ETTEEEEEEES-STTCEEEEEEEECC
T ss_pred             cccCCCC------------CCCEEEEEecC--CCCceEEEEEc-CCCcccceEEeccc
Confidence            6665443            56799999999  45566666544 34445666666653
>d1mu2a2 e.8.1.2 (A:3-429) HIV-1 reverse transcriptase {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d1ztwa1 e.8.1.2 (A:24-278) MMLV reverse transcriptase {Moloney murine leukemia virus, MoMLV [TaxId: 11801]} Back     information, alignment and structure
>d1s1ta1 c.55.3.1 (A:430-539) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure
>d1mu2a1 c.55.3.1 (A:430-555) HIV RNase H (Domain of reverse transcriptase) {Human immunodeficiency virus type 2 [TaxId: 11709]} Back     information, alignment and structure
>d1jl1a_ c.55.3.1 (A:) RNase H (RNase HI) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d1rila_ c.55.3.1 (A:) RNase H (RNase HI) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1k6ya1 a.4.10.1 (A:1-46) N-terminal Zn binding domain of HIV integrase {Human immunodeficiency virus type 1 [TaxId: 11676]} Back     information, alignment and structure